Query 006630
Match_columns 638
No_of_seqs 845 out of 4020
Neff 10.6
Searched_HMMs 46136
Date Thu Mar 28 12:12:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006630.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006630hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2.4E-70 5.2E-75 614.9 54.7 516 92-629 210-731 (857)
2 PLN03081 pentatricopeptide (PP 100.0 2.5E-68 5.5E-73 584.6 49.7 478 135-628 84-567 (697)
3 PLN03218 maturation of RBCL 1; 100.0 3.4E-66 7.3E-71 569.7 64.8 512 104-623 370-913 (1060)
4 PLN03077 Protein ECB2; Provisi 100.0 3.1E-67 6.7E-72 589.8 54.0 509 91-617 108-652 (857)
5 PLN03218 maturation of RBCL 1; 100.0 6.2E-64 1.3E-68 551.8 65.8 493 90-590 391-910 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 3.9E-58 8.4E-63 504.1 57.6 468 103-590 86-558 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.2E-31 4.8E-36 305.8 63.4 469 137-621 396-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.1E-31 6.7E-36 304.6 63.2 466 136-617 429-898 (899)
9 PRK11447 cellulose synthase su 100.0 7.3E-23 1.6E-27 236.3 60.0 497 103-619 61-700 (1157)
10 PRK11447 cellulose synthase su 100.0 3.3E-22 7.2E-27 230.9 62.4 488 114-617 122-738 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 1E-23 2.3E-28 206.1 36.8 438 141-597 51-493 (966)
12 KOG4626 O-linked N-acetylgluco 99.9 1.8E-21 4E-26 190.6 41.0 447 107-571 51-501 (966)
13 TIGR00990 3a0801s09 mitochondr 99.9 5.7E-20 1.2E-24 199.5 55.5 465 140-628 129-606 (615)
14 PRK09782 bacteriophage N4 rece 99.9 4.3E-19 9.3E-24 196.0 56.6 490 105-621 79-708 (987)
15 PRK11788 tetratricopeptide rep 99.9 8.2E-21 1.8E-25 195.7 36.8 292 255-555 47-348 (389)
16 TIGR00990 3a0801s09 mitochondr 99.9 2.6E-18 5.6E-23 186.6 55.9 425 113-554 136-571 (615)
17 PRK11788 tetratricopeptide rep 99.9 2.2E-20 4.9E-25 192.5 36.7 306 146-489 43-354 (389)
18 PRK15174 Vi polysaccharide exp 99.9 2.7E-19 5.8E-24 193.5 46.3 334 249-594 48-386 (656)
19 PRK10049 pgaA outer membrane p 99.9 2.8E-19 6.2E-24 197.5 47.4 412 173-596 14-463 (765)
20 PRK15174 Vi polysaccharide exp 99.9 3.3E-19 7.2E-24 192.8 46.7 332 177-519 45-381 (656)
21 PRK09782 bacteriophage N4 rece 99.9 2.7E-18 5.7E-23 189.8 53.7 479 117-622 57-675 (987)
22 PRK14574 hmsH outer membrane p 99.9 6.5E-18 1.4E-22 182.9 55.1 445 143-597 39-521 (822)
23 KOG2002 TPR-containing nuclear 99.9 1.6E-18 3.4E-23 179.2 45.8 478 134-622 266-801 (1018)
24 PRK10049 pgaA outer membrane p 99.9 1.9E-17 4.1E-22 183.1 50.9 417 101-562 12-462 (765)
25 KOG2002 TPR-containing nuclear 99.8 1.8E-16 3.8E-21 164.3 45.8 456 154-619 252-745 (1018)
26 PRK14574 hmsH outer membrane p 99.8 6.2E-16 1.3E-20 167.7 50.0 428 183-619 43-513 (822)
27 KOG2003 TPR repeat-containing 99.8 6.1E-17 1.3E-21 153.5 30.2 485 139-636 202-749 (840)
28 KOG4422 Uncharacterized conser 99.8 2.9E-14 6.2E-19 134.8 41.4 453 137-614 115-617 (625)
29 KOG1915 Cell cycle control pro 99.8 6.2E-13 1.3E-17 127.5 50.7 495 121-631 90-637 (677)
30 KOG0495 HAT repeat protein [RN 99.8 1.5E-13 3.3E-18 136.5 47.0 462 135-622 377-883 (913)
31 KOG4422 Uncharacterized conser 99.8 1.3E-13 2.9E-18 130.4 41.5 425 91-555 137-591 (625)
32 KOG2003 TPR repeat-containing 99.8 7.6E-14 1.6E-18 132.7 39.9 434 142-589 241-722 (840)
33 KOG0495 HAT repeat protein [RN 99.7 2.8E-12 6.2E-17 127.7 48.1 446 134-597 436-888 (913)
34 KOG2076 RNA polymerase III tra 99.7 2.8E-12 6.1E-17 132.7 48.9 123 493-615 629-765 (895)
35 KOG2076 RNA polymerase III tra 99.7 5.3E-12 1.1E-16 130.7 49.9 440 145-589 146-695 (895)
36 KOG1915 Cell cycle control pro 99.7 1.1E-11 2.4E-16 119.1 47.4 440 140-595 75-542 (677)
37 KOG1155 Anaphase-promoting com 99.7 4.2E-12 9.1E-17 121.8 39.2 368 204-589 159-536 (559)
38 KOG0547 Translocase of outer m 99.7 1.1E-12 2.4E-17 126.4 34.3 212 396-616 339-563 (606)
39 KOG1155 Anaphase-promoting com 99.6 2.9E-12 6.2E-17 122.9 35.3 353 242-613 163-530 (559)
40 KOG1173 Anaphase-promoting com 99.6 3.3E-12 7.2E-17 125.6 36.3 456 127-596 38-525 (611)
41 PF13429 TPR_15: Tetratricopep 99.6 9.6E-16 2.1E-20 149.6 11.1 259 353-619 13-277 (280)
42 PRK10747 putative protoheme IX 99.6 2.6E-12 5.7E-17 131.3 36.7 251 289-552 129-388 (398)
43 TIGR00540 hemY_coli hemY prote 99.6 3.6E-12 7.8E-17 131.0 35.9 297 254-589 95-399 (409)
44 PRK10747 putative protoheme IX 99.6 4.3E-12 9.3E-17 129.7 35.8 222 251-481 161-389 (398)
45 TIGR00540 hemY_coli hemY prote 99.6 4.6E-12 1E-16 130.2 34.7 291 187-481 97-398 (409)
46 COG2956 Predicted N-acetylgluc 99.6 5.9E-12 1.3E-16 115.4 30.7 290 255-553 47-346 (389)
47 PF13429 TPR_15: Tetratricopep 99.6 1.1E-14 2.3E-19 142.2 12.2 127 418-549 146-272 (280)
48 KOG2047 mRNA splicing factor [ 99.6 2.5E-09 5.4E-14 107.0 48.7 283 327-615 361-683 (835)
49 KOG0547 Translocase of outer m 99.6 3.8E-11 8.2E-16 116.1 34.9 425 142-601 119-578 (606)
50 KOG1126 DNA-binding cell divis 99.6 7.5E-13 1.6E-17 132.8 23.7 289 293-595 334-626 (638)
51 KOG1126 DNA-binding cell divis 99.6 7.3E-13 1.6E-17 132.9 22.8 286 328-625 334-626 (638)
52 COG2956 Predicted N-acetylgluc 99.5 2.9E-11 6.2E-16 111.0 29.2 294 151-489 48-354 (389)
53 COG3071 HemY Uncharacterized e 99.5 1.1E-10 2.4E-15 110.6 34.2 286 256-553 97-389 (400)
54 KOG1173 Anaphase-promoting com 99.5 1.7E-10 3.6E-15 113.9 34.4 465 139-621 17-520 (611)
55 KOG1174 Anaphase-promoting com 99.5 2.8E-09 6.1E-14 101.2 38.7 407 171-597 94-508 (564)
56 KOG1156 N-terminal acetyltrans 99.5 5.5E-09 1.2E-13 104.9 42.8 464 140-620 10-512 (700)
57 COG3071 HemY Uncharacterized e 99.5 2.7E-09 5.8E-14 101.4 37.4 252 221-481 130-389 (400)
58 KOG4318 Bicoid mRNA stability 99.4 8.7E-10 1.9E-14 114.1 35.0 502 91-621 12-627 (1088)
59 KOG2047 mRNA splicing factor [ 99.4 1E-07 2.3E-12 95.7 45.5 436 140-590 140-688 (835)
60 PRK12370 invasion protein regu 99.4 4.4E-10 9.6E-15 120.1 31.5 266 173-448 255-536 (553)
61 TIGR02521 type_IV_pilW type IV 99.4 3.2E-10 6.9E-15 107.6 27.5 200 385-589 33-232 (234)
62 KOG3785 Uncharacterized conser 99.4 5.7E-09 1.2E-13 97.1 33.6 415 144-592 63-493 (557)
63 TIGR02521 type_IV_pilW type IV 99.4 1.3E-10 2.9E-15 110.2 24.0 199 416-619 29-232 (234)
64 PRK12370 invasion protein regu 99.4 7.4E-10 1.6E-14 118.4 31.8 239 364-612 277-529 (553)
65 KOG4162 Predicted calmodulin-b 99.4 1.3E-08 2.7E-13 104.5 37.5 440 135-596 320-790 (799)
66 PF12569 NARP1: NMDA receptor- 99.4 1.7E-08 3.6E-13 104.4 39.2 290 145-445 11-332 (517)
67 KOG1156 N-terminal acetyltrans 99.4 1.9E-07 4E-12 94.2 44.5 422 147-586 50-508 (700)
68 KOG1129 TPR repeat-containing 99.3 1.7E-10 3.7E-15 106.0 19.9 242 347-596 222-465 (478)
69 KOG2376 Signal recognition par 99.3 1E-07 2.2E-12 95.0 40.5 148 433-586 356-517 (652)
70 KOG1129 TPR repeat-containing 99.3 8E-11 1.7E-15 108.1 16.0 235 380-621 220-460 (478)
71 KOG4318 Bicoid mRNA stability 99.3 1.7E-10 3.6E-15 119.2 20.1 249 265-540 12-286 (1088)
72 KOG1840 Kinesin light chain [C 99.3 1.4E-09 3E-14 110.8 24.5 244 349-592 200-482 (508)
73 KOG2376 Signal recognition par 99.3 1.2E-07 2.5E-12 94.7 36.8 422 143-597 17-495 (652)
74 PF12569 NARP1: NMDA receptor- 99.3 2.7E-08 5.8E-13 102.9 33.7 297 176-481 6-333 (517)
75 KOG4162 Predicted calmodulin-b 99.3 4.3E-08 9.3E-13 100.7 34.2 418 203-629 317-793 (799)
76 KOG0548 Molecular co-chaperone 99.3 3.8E-08 8.3E-13 97.1 32.4 419 146-605 10-471 (539)
77 KOG1840 Kinesin light chain [C 99.3 5.4E-09 1.2E-13 106.6 27.2 232 385-617 201-477 (508)
78 PF13041 PPR_2: PPR repeat fam 99.2 1.9E-11 4.2E-16 83.6 6.5 50 241-290 1-50 (50)
79 KOG1174 Anaphase-promoting com 99.2 4.9E-08 1.1E-12 93.0 31.2 290 187-483 209-501 (564)
80 KOG3785 Uncharacterized conser 99.2 8.5E-08 1.8E-12 89.5 30.9 453 145-632 29-501 (557)
81 PF13041 PPR_2: PPR repeat fam 99.2 4.3E-11 9.2E-16 81.9 6.8 49 346-394 1-49 (50)
82 COG3063 PilF Tfp pilus assembl 99.2 1.4E-08 3.1E-13 89.4 23.9 206 385-595 37-242 (250)
83 KOG1127 TPR repeat-containing 99.2 1.5E-07 3.2E-12 99.1 33.9 163 139-305 493-657 (1238)
84 PRK11189 lipoprotein NlpI; Pro 99.2 1.2E-08 2.6E-13 99.9 25.2 220 362-592 40-268 (296)
85 KOG1127 TPR repeat-containing 99.2 2.1E-07 4.6E-12 98.0 34.1 449 153-615 473-992 (1238)
86 KOG0548 Molecular co-chaperone 99.2 5.2E-08 1.1E-12 96.2 28.1 402 182-620 10-456 (539)
87 PRK11189 lipoprotein NlpI; Pro 99.1 9.1E-08 2E-12 93.7 28.5 220 151-378 39-266 (296)
88 KOG0985 Vesicle coat protein c 99.1 1.6E-06 3.5E-11 91.4 38.3 142 453-615 1104-1245(1666)
89 KOG3616 Selective LIM binding 99.1 3.8E-07 8.3E-12 92.8 32.4 220 356-615 714-933 (1636)
90 cd05804 StaR_like StaR_like; a 99.1 7E-07 1.5E-11 90.8 35.7 202 138-341 6-214 (355)
91 KOG4340 Uncharacterized conser 99.1 2.5E-07 5.5E-12 84.4 26.1 419 177-623 13-447 (459)
92 COG3063 PilF Tfp pilus assembl 99.1 1.6E-07 3.4E-12 83.0 23.7 197 141-342 38-236 (250)
93 cd05804 StaR_like StaR_like; a 99.1 1.3E-06 2.8E-11 88.8 34.4 198 175-376 7-214 (355)
94 PF04733 Coatomer_E: Coatomer 99.1 6.1E-09 1.3E-13 100.3 16.2 271 322-610 10-286 (290)
95 KOG0624 dsRNA-activated protei 99.1 1.1E-06 2.3E-11 82.0 29.7 94 501-596 280-377 (504)
96 KOG3616 Selective LIM binding 99.0 1.6E-06 3.5E-11 88.3 32.9 412 140-615 591-1072(1636)
97 KOG4340 Uncharacterized conser 99.0 1.3E-06 2.8E-11 79.9 27.8 287 137-444 43-336 (459)
98 KOG0985 Vesicle coat protein c 99.0 3.6E-05 7.7E-10 81.7 40.8 277 253-583 1058-1335(1666)
99 KOG0624 dsRNA-activated protei 98.9 9.2E-06 2E-10 76.0 31.4 189 324-519 166-370 (504)
100 PRK04841 transcriptional regul 98.9 1.1E-05 2.3E-10 93.1 39.5 268 252-519 461-760 (903)
101 PRK04841 transcriptional regul 98.9 1.3E-05 2.9E-10 92.3 39.8 344 251-594 382-765 (903)
102 KOG1914 mRNA cleavage and poly 98.9 0.00012 2.6E-09 72.9 40.7 134 133-271 15-165 (656)
103 KOG3617 WD40 and TPR repeat-co 98.9 1E-05 2.2E-10 83.8 31.1 259 137-445 725-994 (1416)
104 KOG1125 TPR repeat-containing 98.8 7E-07 1.5E-11 89.2 20.8 252 322-582 294-564 (579)
105 PLN02789 farnesyltranstransfer 98.8 6.9E-06 1.5E-10 80.4 27.5 205 360-572 49-267 (320)
106 KOG1125 TPR repeat-containing 98.8 5E-07 1.1E-11 90.2 19.4 227 357-594 294-532 (579)
107 PF04733 Coatomer_E: Coatomer 98.8 2E-07 4.2E-12 90.0 16.1 147 393-552 112-263 (290)
108 KOG3617 WD40 and TPR repeat-co 98.8 7.3E-06 1.6E-10 84.9 27.7 346 184-589 738-1109(1416)
109 PLN02789 farnesyltranstransfer 98.8 8.4E-06 1.8E-10 79.8 27.5 215 140-360 39-267 (320)
110 KOG1070 rRNA processing protei 98.8 9.3E-06 2E-10 89.0 28.6 240 345-589 1455-1700(1710)
111 TIGR03302 OM_YfiO outer membra 98.7 2.3E-06 5E-11 81.2 20.9 59 531-589 172-232 (235)
112 KOG1128 Uncharacterized conser 98.7 9.5E-07 2.1E-11 90.5 18.1 217 385-624 400-621 (777)
113 KOG1914 mRNA cleavage and poly 98.7 0.00052 1.1E-08 68.6 38.8 443 163-615 11-535 (656)
114 KOG1070 rRNA processing protei 98.7 2E-05 4.3E-10 86.5 28.0 205 276-484 1456-1665(1710)
115 KOG1128 Uncharacterized conser 98.7 1.9E-06 4.1E-11 88.4 18.9 219 350-592 400-619 (777)
116 KOG2053 Mitochondrial inherita 98.6 0.0012 2.6E-08 70.1 39.6 454 150-620 21-537 (932)
117 TIGR03302 OM_YfiO outer membra 98.6 5.1E-06 1.1E-10 78.8 20.8 193 132-342 27-232 (235)
118 KOG3060 Uncharacterized conser 98.6 2.3E-05 5E-10 70.5 22.5 196 398-600 27-232 (289)
119 KOG3081 Vesicle coat complex C 98.6 4.5E-05 9.7E-10 69.2 24.3 157 427-596 117-278 (299)
120 PRK10370 formate-dependent nit 98.6 8.7E-06 1.9E-10 74.2 20.4 125 466-596 52-180 (198)
121 PF12854 PPR_1: PPR repeat 98.6 7E-08 1.5E-12 59.2 4.3 32 204-235 2-33 (34)
122 PF12854 PPR_1: PPR repeat 98.6 6.9E-08 1.5E-12 59.2 3.9 32 343-374 2-33 (34)
123 PRK15359 type III secretion sy 98.6 1.8E-06 3.9E-11 74.4 14.1 100 496-597 30-129 (144)
124 PRK10370 formate-dependent nit 98.6 2.1E-05 4.6E-10 71.6 21.1 124 431-560 52-178 (198)
125 COG5010 TadD Flp pilus assembl 98.5 1.9E-05 4.1E-10 71.8 19.9 160 178-340 70-229 (257)
126 PRK15179 Vi polysaccharide bio 98.5 3.6E-05 7.7E-10 83.2 25.7 133 452-590 85-218 (694)
127 COG5010 TadD Flp pilus assembl 98.5 3.2E-05 6.9E-10 70.3 20.6 159 422-586 70-228 (257)
128 PRK15179 Vi polysaccharide bio 98.5 2.1E-05 4.5E-10 84.9 22.0 150 132-285 80-229 (694)
129 PRK14720 transcript cleavage f 98.5 8.5E-05 1.8E-09 81.1 26.3 170 171-377 28-198 (906)
130 TIGR02552 LcrH_SycD type III s 98.4 5.6E-06 1.2E-10 70.8 13.9 117 475-596 5-121 (135)
131 PRK15359 type III secretion sy 98.4 1.8E-05 3.9E-10 68.1 16.8 121 439-569 14-135 (144)
132 PRK14720 transcript cleavage f 98.4 0.00014 2.9E-09 79.6 26.1 130 136-271 29-177 (906)
133 COG4783 Putative Zn-dependent 98.4 0.00017 3.7E-09 71.3 24.3 139 428-590 316-455 (484)
134 KOG3081 Vesicle coat complex C 98.4 0.00025 5.3E-09 64.6 22.7 141 390-543 115-259 (299)
135 KOG3060 Uncharacterized conser 98.4 0.0004 8.7E-09 62.7 23.2 186 188-377 26-220 (289)
136 COG4783 Putative Zn-dependent 98.3 0.00044 9.6E-09 68.5 24.1 120 251-374 314-434 (484)
137 TIGR02552 LcrH_SycD type III s 98.3 3.9E-05 8.5E-10 65.5 14.6 95 177-272 20-114 (135)
138 PF09976 TPR_21: Tetratricopep 98.2 6.2E-05 1.4E-09 65.1 14.9 129 455-586 14-144 (145)
139 KOG2053 Mitochondrial inherita 98.2 0.015 3.3E-07 62.1 49.0 446 148-613 53-564 (932)
140 PF09976 TPR_21: Tetratricopep 98.1 0.00021 4.5E-09 61.8 15.1 125 421-551 15-144 (145)
141 KOG0550 Molecular chaperone (D 98.1 0.00016 3.6E-09 69.7 15.3 89 317-407 53-141 (486)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00019 4.1E-09 71.8 16.0 127 139-271 170-296 (395)
143 KOG0550 Molecular chaperone (D 98.0 0.0012 2.7E-08 63.9 20.3 277 282-592 53-353 (486)
144 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00012 2.5E-09 60.9 12.2 103 492-596 4-112 (119)
145 TIGR00756 PPR pentatricopeptid 98.0 1.3E-05 2.8E-10 49.9 4.3 33 245-277 2-34 (35)
146 PRK15363 pathogenicity island 98.0 4.1E-05 8.9E-10 64.8 8.3 84 531-616 41-129 (157)
147 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00032 6.8E-09 70.3 15.9 119 180-304 175-294 (395)
148 KOG0553 TPR repeat-containing 97.9 4.9E-05 1.1E-09 70.5 8.8 92 500-594 91-183 (304)
149 TIGR00756 PPR pentatricopeptid 97.9 2.1E-05 4.5E-10 48.9 4.5 33 350-382 2-34 (35)
150 KOG2041 WD40 repeat protein [G 97.9 0.042 9.1E-07 57.0 30.9 362 172-583 690-1080(1189)
151 PLN03088 SGT1, suppressor of 97.9 0.00018 3.9E-09 72.3 12.9 97 498-597 10-107 (356)
152 PF05843 Suf: Suppressor of fo 97.9 0.00031 6.7E-09 68.0 14.0 137 454-596 2-143 (280)
153 PRK10153 DNA-binding transcrip 97.9 0.00062 1.3E-08 71.4 17.0 142 450-597 334-490 (517)
154 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00054 1.2E-08 56.8 13.4 108 140-247 4-114 (119)
155 cd00189 TPR Tetratricopeptide 97.8 0.00022 4.8E-09 56.0 10.6 94 496-591 6-99 (100)
156 PF13812 PPR_3: Pentatricopept 97.8 3.4E-05 7.4E-10 47.5 4.1 32 245-276 3-34 (34)
157 PF13812 PPR_3: Pentatricopept 97.8 3.9E-05 8.5E-10 47.2 4.1 32 350-381 3-34 (34)
158 PF13414 TPR_11: TPR repeat; P 97.7 0.00011 2.4E-09 54.1 6.6 66 524-591 2-69 (69)
159 cd00189 TPR Tetratricopeptide 97.7 0.00066 1.4E-08 53.2 11.7 23 246-268 37-59 (100)
160 PF13432 TPR_16: Tetratricopep 97.7 0.00011 2.4E-09 53.4 6.4 62 531-594 3-65 (65)
161 PF12895 Apc3: Anaphase-promot 97.7 5.2E-05 1.1E-09 58.5 4.7 80 503-585 2-83 (84)
162 PF10037 MRP-S27: Mitochondria 97.7 0.00074 1.6E-08 68.0 13.7 121 275-395 63-185 (429)
163 PRK02603 photosystem I assembl 97.7 0.0022 4.8E-08 57.2 15.7 85 176-260 37-123 (172)
164 COG4700 Uncharacterized protei 97.7 0.0042 9.1E-08 53.5 15.5 129 488-616 87-219 (251)
165 PF05843 Suf: Suppressor of fo 97.6 0.0011 2.3E-08 64.3 13.8 127 177-306 4-135 (280)
166 PRK02603 photosystem I assembl 97.6 0.0014 3E-08 58.6 13.6 118 454-594 36-154 (172)
167 PRK15363 pathogenicity island 97.6 0.0088 1.9E-07 50.9 17.3 86 462-551 44-129 (157)
168 PF10037 MRP-S27: Mitochondria 97.6 0.00079 1.7E-08 67.7 13.1 124 308-431 61-186 (429)
169 PF01535 PPR: PPR repeat; Int 97.6 8E-05 1.7E-09 44.7 3.4 29 245-273 2-30 (31)
170 CHL00033 ycf3 photosystem I as 97.6 0.0013 2.8E-08 58.5 12.6 81 174-254 35-117 (168)
171 PF14938 SNAP: Soluble NSF att 97.6 0.023 4.9E-07 55.3 22.1 151 426-591 102-268 (282)
172 PLN03088 SGT1, suppressor of 97.6 0.0022 4.8E-08 64.5 15.3 88 462-553 11-98 (356)
173 PRK10866 outer membrane biogen 97.6 0.026 5.7E-07 53.2 21.3 177 214-409 37-238 (243)
174 PF01535 PPR: PPR repeat; Int 97.5 9.6E-05 2.1E-09 44.3 3.1 29 350-378 2-30 (31)
175 PF12895 Apc3: Anaphase-promot 97.5 0.00019 4.1E-09 55.3 5.6 82 466-550 2-83 (84)
176 KOG2280 Vacuolar assembly/sort 97.5 0.18 3.8E-06 53.3 27.1 328 179-548 442-793 (829)
177 PRK10153 DNA-binding transcrip 97.4 0.0093 2E-07 62.8 18.5 143 415-563 334-489 (517)
178 COG4235 Cytochrome c biogenesi 97.4 0.0071 1.5E-07 56.9 15.6 121 441-568 145-268 (287)
179 PF08579 RPM2: Mitochondrial r 97.4 0.0029 6.2E-08 49.9 10.8 74 284-357 31-113 (120)
180 PF08579 RPM2: Mitochondrial r 97.4 0.0025 5.5E-08 50.2 10.4 80 246-325 28-116 (120)
181 CHL00033 ycf3 photosystem I as 97.4 0.0029 6.2E-08 56.3 12.7 65 455-519 37-101 (168)
182 PF12688 TPR_5: Tetratrico pep 97.4 0.0072 1.6E-07 49.5 13.5 93 458-552 6-102 (120)
183 PF12688 TPR_5: Tetratrico pep 97.4 0.0067 1.5E-07 49.7 13.3 106 180-289 7-117 (120)
184 PF13414 TPR_11: TPR repeat; P 97.4 0.00031 6.6E-09 51.7 4.9 61 559-619 2-67 (69)
185 PF14938 SNAP: Soluble NSF att 97.4 0.037 8E-07 53.9 20.7 91 392-482 123-225 (282)
186 KOG0553 TPR repeat-containing 97.4 0.0026 5.7E-08 59.3 11.7 98 427-530 90-187 (304)
187 PRK10866 outer membrane biogen 97.4 0.044 9.5E-07 51.7 20.4 177 319-516 38-238 (243)
188 PRK10803 tol-pal system protei 97.4 0.0024 5.2E-08 60.7 11.9 100 492-595 145-252 (263)
189 PRK15331 chaperone protein Sic 97.3 0.0046 1E-07 52.9 11.9 85 534-619 46-134 (165)
190 PF06239 ECSIT: Evolutionarily 97.3 0.0042 9.1E-08 55.4 11.9 103 242-363 46-153 (228)
191 KOG2796 Uncharacterized conser 97.3 0.01 2.2E-07 54.1 14.3 143 139-284 178-325 (366)
192 COG4235 Cytochrome c biogenesi 97.3 0.011 2.3E-07 55.7 15.0 113 157-272 141-256 (287)
193 KOG1130 Predicted G-alpha GTPa 97.3 0.0046 1E-07 59.8 12.8 288 286-590 25-345 (639)
194 PF14559 TPR_19: Tetratricopep 97.3 0.00094 2E-08 48.9 6.3 52 221-272 3-54 (68)
195 COG4700 Uncharacterized protei 97.3 0.099 2.2E-06 45.3 18.8 131 415-548 86-216 (251)
196 PF14559 TPR_19: Tetratricopep 97.2 0.002 4.2E-08 47.2 7.9 63 149-215 2-64 (68)
197 PF06239 ECSIT: Evolutionarily 97.2 0.0084 1.8E-07 53.5 12.8 105 275-398 44-153 (228)
198 PF04840 Vps16_C: Vps16, C-ter 97.2 0.14 3E-06 50.3 22.6 108 315-442 179-286 (319)
199 PF04840 Vps16_C: Vps16, C-ter 97.2 0.25 5.4E-06 48.6 28.4 106 421-548 180-285 (319)
200 KOG0543 FKBP-type peptidyl-pro 97.2 0.005 1.1E-07 60.1 11.9 95 525-620 257-356 (397)
201 PF13432 TPR_16: Tetratricopep 97.2 0.0019 4.1E-08 46.7 7.0 57 216-272 4-60 (65)
202 COG3898 Uncharacterized membra 97.1 0.32 6.9E-06 47.4 30.9 223 325-558 166-396 (531)
203 PF13371 TPR_9: Tetratricopept 97.1 0.0014 3.1E-08 48.8 5.9 62 533-596 3-65 (73)
204 KOG1130 Predicted G-alpha GTPa 97.0 0.0041 8.8E-08 60.2 9.0 124 492-615 197-340 (639)
205 PRK10803 tol-pal system protei 96.9 0.018 3.9E-07 54.8 13.2 98 420-519 145-246 (263)
206 PF13281 DUF4071: Domain of un 96.9 0.12 2.6E-06 51.3 19.0 39 557-595 302-340 (374)
207 PF04184 ST7: ST7 protein; In 96.9 0.074 1.6E-06 53.6 17.5 116 494-611 263-406 (539)
208 PF13525 YfiO: Outer membrane 96.8 0.17 3.6E-06 46.5 18.4 46 355-400 148-195 (203)
209 COG5107 RNA14 Pre-mRNA 3'-end 96.8 0.62 1.3E-05 46.3 32.6 422 157-593 28-535 (660)
210 COG5107 RNA14 Pre-mRNA 3'-end 96.8 0.67 1.5E-05 46.1 37.5 422 132-571 36-546 (660)
211 PF13525 YfiO: Outer membrane 96.8 0.27 5.9E-06 45.1 19.1 50 459-508 147-196 (203)
212 PF13424 TPR_12: Tetratricopep 96.7 0.0063 1.4E-07 45.9 6.9 65 526-590 6-76 (78)
213 PF07079 DUF1347: Protein of u 96.7 0.77 1.7E-05 45.8 42.4 194 383-584 298-519 (549)
214 KOG2396 HAT (Half-A-TPR) repea 96.6 0.96 2.1E-05 45.8 35.8 420 131-592 98-563 (568)
215 PF03704 BTAD: Bacterial trans 96.6 0.058 1.3E-06 46.5 12.8 70 211-280 64-138 (146)
216 KOG1538 Uncharacterized conser 96.5 0.91 2E-05 47.3 22.0 86 385-481 749-845 (1081)
217 KOG1538 Uncharacterized conser 96.5 0.15 3.2E-06 52.7 16.2 89 316-409 559-658 (1081)
218 PF13428 TPR_14: Tetratricopep 96.5 0.0032 6.8E-08 41.3 3.1 40 561-600 2-41 (44)
219 COG0457 NrfG FOG: TPR repeat [ 96.4 0.86 1.9E-05 42.2 30.2 227 362-592 37-268 (291)
220 PF13371 TPR_9: Tetratricopept 96.3 0.023 5E-07 42.1 7.7 56 217-272 3-58 (73)
221 COG4105 ComL DNA uptake lipopr 96.3 0.4 8.7E-06 44.4 16.3 162 416-584 33-228 (254)
222 PRK15331 chaperone protein Sic 96.2 0.37 8E-06 41.5 14.8 87 463-553 47-133 (165)
223 COG1729 Uncharacterized protei 96.2 0.055 1.2E-06 50.4 10.5 102 492-596 144-251 (262)
224 KOG2796 Uncharacterized conser 96.1 1.1 2.4E-05 41.4 23.5 130 353-483 182-316 (366)
225 KOG1258 mRNA processing protei 96.1 2.2 4.7E-05 44.5 31.4 144 125-272 33-180 (577)
226 KOG4234 TPR repeat-containing 96.1 0.02 4.4E-07 50.0 6.9 96 498-596 103-204 (271)
227 PRK11906 transcriptional regul 96.1 0.18 3.9E-06 50.9 14.2 88 506-596 320-408 (458)
228 PF13424 TPR_12: Tetratricopep 96.0 0.021 4.5E-07 43.0 6.1 61 492-552 7-73 (78)
229 PF10300 DUF3808: Protein of u 96.0 0.42 9.1E-06 50.1 17.5 161 213-376 192-375 (468)
230 PF08631 SPO22: Meiosis protei 96.0 1.7 3.6E-05 42.2 25.8 123 149-272 4-150 (278)
231 PF13281 DUF4071: Domain of un 95.9 1.8 3.9E-05 43.2 20.3 33 256-288 195-227 (374)
232 KOG2610 Uncharacterized conser 95.9 0.46 9.9E-06 45.4 15.2 114 396-514 116-233 (491)
233 PF13512 TPR_18: Tetratricopep 95.9 0.25 5.4E-06 41.4 12.1 21 576-596 115-135 (142)
234 PF12921 ATP13: Mitochondrial 95.8 0.23 5E-06 41.2 11.8 100 452-573 1-101 (126)
235 PF03704 BTAD: Bacterial trans 95.8 0.11 2.4E-06 44.8 10.5 50 463-515 72-121 (146)
236 PF12921 ATP13: Mitochondrial 95.8 0.11 2.5E-06 43.0 9.8 95 138-253 2-98 (126)
237 PLN03098 LPA1 LOW PSII ACCUMUL 95.8 0.22 4.9E-06 50.1 13.4 70 134-203 71-141 (453)
238 PF07079 DUF1347: Protein of u 95.7 2.6 5.6E-05 42.3 41.8 388 149-565 90-530 (549)
239 PF00515 TPR_1: Tetratricopept 95.7 0.02 4.3E-07 34.9 3.9 33 561-593 2-34 (34)
240 KOG1941 Acetylcholine receptor 95.7 0.64 1.4E-05 44.9 15.3 230 358-588 16-274 (518)
241 COG1729 Uncharacterized protei 95.6 0.24 5.2E-06 46.3 12.2 98 420-519 144-244 (262)
242 COG3898 Uncharacterized membra 95.6 2.5 5.5E-05 41.5 33.4 291 141-446 85-391 (531)
243 KOG1258 mRNA processing protei 95.6 3.5 7.5E-05 43.0 35.4 105 132-238 73-180 (577)
244 PLN03098 LPA1 LOW PSII ACCUMUL 95.6 0.21 4.6E-06 50.3 12.5 62 173-236 74-139 (453)
245 KOG1941 Acetylcholine receptor 95.6 2.3 4.9E-05 41.3 18.5 46 290-335 18-65 (518)
246 KOG4555 TPR repeat-containing 95.6 0.077 1.7E-06 43.0 7.5 93 499-592 52-147 (175)
247 PF10300 DUF3808: Protein of u 95.5 0.35 7.7E-06 50.6 14.5 128 422-553 192-333 (468)
248 PF07719 TPR_2: Tetratricopept 95.5 0.029 6.3E-07 34.1 4.0 33 561-593 2-34 (34)
249 KOG1585 Protein required for f 95.4 1.6 3.5E-05 39.9 16.2 211 133-370 26-249 (308)
250 COG3118 Thioredoxin domain-con 95.4 2.2 4.8E-05 40.4 17.5 119 221-341 146-264 (304)
251 PRK11906 transcriptional regul 95.3 2.1 4.5E-05 43.5 18.3 111 433-550 319-432 (458)
252 smart00299 CLH Clathrin heavy 95.2 1.4 3E-05 37.5 15.1 42 180-222 13-54 (140)
253 KOG4555 TPR repeat-containing 95.2 0.36 7.7E-06 39.3 10.1 91 461-555 51-145 (175)
254 PF04053 Coatomer_WDAD: Coatom 95.1 0.97 2.1E-05 46.7 16.1 156 149-338 272-427 (443)
255 smart00299 CLH Clathrin heavy 95.0 1.9 4.2E-05 36.6 15.6 41 144-186 13-53 (140)
256 KOG4648 Uncharacterized conser 95.0 0.06 1.3E-06 51.2 6.1 105 498-605 105-210 (536)
257 COG3118 Thioredoxin domain-con 94.9 2.1 4.5E-05 40.6 15.9 122 147-271 143-264 (304)
258 KOG0543 FKBP-type peptidyl-pro 94.9 0.5 1.1E-05 46.6 12.4 62 455-519 259-320 (397)
259 PF10345 Cohesin_load: Cohesin 94.8 7.6 0.00017 42.5 41.4 188 429-619 372-606 (608)
260 KOG0292 Vesicle coat complex C 94.8 4.6 9.9E-05 44.0 19.8 177 151-377 606-782 (1202)
261 PF13512 TPR_18: Tetratricopep 94.8 0.86 1.9E-05 38.3 12.0 54 429-483 21-77 (142)
262 COG4105 ComL DNA uptake lipopr 94.8 3.5 7.5E-05 38.4 19.6 60 459-518 173-232 (254)
263 PF04097 Nic96: Nup93/Nic96; 94.7 5.7 0.00012 43.3 21.5 24 572-596 517-540 (613)
264 KOG2114 Vacuolar assembly/sort 94.7 7.8 0.00017 42.1 25.2 177 141-340 337-517 (933)
265 KOG2610 Uncharacterized conser 94.7 1.1 2.4E-05 42.9 13.6 118 149-268 114-234 (491)
266 KOG1550 Extracellular protein 94.6 7.8 0.00017 41.8 23.2 81 505-592 454-541 (552)
267 PF04053 Coatomer_WDAD: Coatom 94.6 0.97 2.1E-05 46.7 14.6 46 322-373 327-372 (443)
268 PF13431 TPR_17: Tetratricopep 94.6 0.007 1.5E-07 36.9 -0.5 28 583-610 2-33 (34)
269 PF13176 TPR_7: Tetratricopept 94.6 0.1 2.2E-06 32.2 4.8 31 562-592 1-31 (36)
270 PF02259 FAT: FAT domain; Int 94.5 6 0.00013 39.8 21.4 67 452-518 145-212 (352)
271 COG2976 Uncharacterized protei 94.5 0.87 1.9E-05 40.2 11.6 118 471-592 70-191 (207)
272 COG0457 NrfG FOG: TPR repeat [ 94.5 4 8.6E-05 37.6 31.1 86 463-553 177-264 (291)
273 PF13181 TPR_8: Tetratricopept 94.4 0.1 2.3E-06 31.6 4.5 32 562-593 3-34 (34)
274 KOG4234 TPR repeat-containing 94.4 0.89 1.9E-05 40.2 11.3 89 534-623 104-201 (271)
275 KOG2041 WD40 repeat protein [G 94.3 8.6 0.00019 40.9 29.9 25 277-301 851-875 (1189)
276 PF13428 TPR_14: Tetratricopep 94.3 0.14 3E-06 33.4 5.1 39 211-249 3-41 (44)
277 KOG3941 Intermediate in Toll s 94.2 0.41 8.8E-06 44.6 9.5 34 365-398 140-173 (406)
278 KOG1464 COP9 signalosome, subu 94.1 5 0.00011 37.4 20.5 48 293-340 42-92 (440)
279 KOG1585 Protein required for f 94.1 4.7 0.0001 37.1 18.5 52 421-473 193-247 (308)
280 KOG3941 Intermediate in Toll s 94.1 0.48 1E-05 44.1 9.6 127 229-375 54-186 (406)
281 COG3629 DnrI DNA-binding trans 93.9 0.61 1.3E-05 44.3 10.4 78 210-287 154-236 (280)
282 COG4649 Uncharacterized protei 93.8 4 8.6E-05 35.4 13.8 53 535-588 142-195 (221)
283 COG1747 Uncharacterized N-term 93.8 9.2 0.0002 39.2 22.7 172 416-596 64-241 (711)
284 PF04097 Nic96: Nup93/Nic96; 93.6 8.2 0.00018 42.2 19.8 66 143-210 116-188 (613)
285 PF09205 DUF1955: Domain of un 93.5 3.7 7.9E-05 33.8 14.1 61 457-520 90-150 (161)
286 PF09205 DUF1955: Domain of un 93.0 4.4 9.6E-05 33.4 15.4 63 246-309 89-151 (161)
287 KOG1920 IkappaB kinase complex 93.0 20 0.00044 40.8 28.8 133 425-587 915-1053(1265)
288 PF09613 HrpB1_HrpK: Bacterial 92.8 5.6 0.00012 34.2 13.5 51 221-271 22-72 (160)
289 KOG4648 Uncharacterized conser 92.2 0.33 7.1E-06 46.4 5.9 86 532-619 104-194 (536)
290 KOG4570 Uncharacterized conser 92.2 0.66 1.4E-05 43.9 7.7 103 132-238 58-164 (418)
291 PF04184 ST7: ST7 protein; In 92.1 16 0.00035 37.6 18.5 57 389-445 265-322 (539)
292 PF14853 Fis1_TPR_C: Fis1 C-te 92.1 0.47 1E-05 32.3 5.0 32 565-596 6-37 (53)
293 PRK09687 putative lyase; Provi 91.8 13 0.00028 35.9 28.1 138 416-571 140-278 (280)
294 KOG1920 IkappaB kinase complex 91.7 29 0.00063 39.7 25.6 38 233-271 781-820 (1265)
295 KOG2280 Vacuolar assembly/sort 91.6 23 0.00049 38.3 33.4 104 494-611 688-791 (829)
296 COG3629 DnrI DNA-binding trans 91.5 2.3 5E-05 40.5 10.7 56 458-516 158-213 (280)
297 KOG3364 Membrane protein invol 91.5 3.7 8.1E-05 33.9 10.3 93 522-628 29-126 (149)
298 KOG2066 Vacuolar assembly/sort 91.5 24 0.00052 38.3 30.6 102 181-290 363-467 (846)
299 PF13170 DUF4003: Protein of u 91.2 15 0.00033 35.7 19.9 127 331-459 80-223 (297)
300 PF08631 SPO22: Meiosis protei 91.2 15 0.00033 35.6 28.5 165 419-588 85-274 (278)
301 COG4785 NlpI Lipoprotein NlpI, 91.0 12 0.00026 33.9 18.3 166 416-592 97-269 (297)
302 COG4649 Uncharacterized protei 90.4 11 0.00024 32.7 14.2 137 136-273 57-197 (221)
303 PF13176 TPR_7: Tetratricopept 90.3 0.61 1.3E-05 28.7 4.0 26 527-552 1-26 (36)
304 PF13431 TPR_17: Tetratricopep 90.3 0.34 7.4E-06 29.4 2.7 31 233-263 3-33 (34)
305 PF10602 RPN7: 26S proteasome 90.1 4.6 0.0001 35.9 10.9 63 244-306 37-101 (177)
306 TIGR02561 HrpB1_HrpK type III 89.6 12 0.00025 31.8 12.0 51 222-272 23-73 (153)
307 PF13174 TPR_6: Tetratricopept 89.4 0.62 1.3E-05 27.7 3.5 29 564-592 4-32 (33)
308 PF07035 Mic1: Colon cancer-as 89.4 14 0.0003 32.3 16.2 133 440-588 16-148 (167)
309 PRK15180 Vi polysaccharide bio 89.4 27 0.00059 35.6 25.1 118 222-341 302-419 (831)
310 PF06552 TOM20_plant: Plant sp 89.3 2 4.3E-05 37.6 7.5 59 508-570 53-123 (186)
311 KOG1550 Extracellular protein 89.3 36 0.00077 36.8 24.2 208 398-618 308-537 (552)
312 KOG1586 Protein required for f 88.8 19 0.00041 33.1 17.1 18 358-375 24-41 (288)
313 PF13170 DUF4003: Protein of u 88.7 25 0.00054 34.3 21.5 24 543-566 200-223 (297)
314 KOG0276 Vesicle coat complex C 88.1 11 0.00025 39.3 13.0 130 178-339 618-747 (794)
315 PF10602 RPN7: 26S proteasome 88.0 4.8 0.0001 35.8 9.5 63 455-517 38-100 (177)
316 PF07035 Mic1: Colon cancer-as 86.9 20 0.00044 31.3 15.1 133 264-410 15-147 (167)
317 PF09613 HrpB1_HrpK: Bacterial 86.5 20 0.00044 30.9 13.5 62 140-203 9-73 (160)
318 KOG0276 Vesicle coat complex C 86.3 18 0.0004 37.9 13.3 132 140-304 616-747 (794)
319 PF08424 NRDE-2: NRDE-2, neces 86.0 38 0.00083 33.6 18.8 123 471-597 49-191 (321)
320 PRK12798 chemotaxis protein; R 85.9 42 0.00091 33.9 20.7 182 431-619 125-324 (421)
321 KOG4570 Uncharacterized conser 85.8 7.9 0.00017 37.0 9.7 103 308-412 59-164 (418)
322 PF00637 Clathrin: Region in C 85.5 0.11 2.5E-06 44.5 -2.2 111 496-617 13-123 (143)
323 PF00515 TPR_1: Tetratricopept 85.5 2.5 5.5E-05 25.3 4.6 31 139-169 2-32 (34)
324 COG3947 Response regulator con 85.5 34 0.00075 32.6 15.4 60 455-517 281-340 (361)
325 COG1747 Uncharacterized N-term 85.5 48 0.001 34.3 25.5 166 382-554 65-234 (711)
326 PF13374 TPR_10: Tetratricopep 84.6 2.6 5.6E-05 26.5 4.6 29 561-589 3-31 (42)
327 COG2976 Uncharacterized protei 84.6 29 0.00063 31.0 14.1 89 460-555 96-189 (207)
328 PF07719 TPR_2: Tetratricopept 84.5 3 6.4E-05 24.8 4.6 31 139-169 2-32 (34)
329 PRK09687 putative lyase; Provi 84.2 42 0.00091 32.5 29.5 80 207-291 35-118 (280)
330 KOG0890 Protein kinase of the 83.9 1.3E+02 0.0027 37.8 31.8 115 184-304 1393-1509(2382)
331 KOG4507 Uncharacterized conser 83.8 3.7 8.1E-05 42.5 7.2 94 502-596 619-712 (886)
332 smart00028 TPR Tetratricopepti 83.7 1.5 3.2E-05 25.2 3.0 30 563-592 4-33 (34)
333 PF11207 DUF2989: Protein of u 83.7 8.9 0.00019 34.4 8.8 41 539-579 154-197 (203)
334 PRK11619 lytic murein transgly 83.5 76 0.0016 34.9 36.4 272 123-410 84-373 (644)
335 COG4785 NlpI Lipoprotein NlpI, 83.4 35 0.00077 31.0 18.6 64 209-272 99-162 (297)
336 cd00923 Cyt_c_Oxidase_Va Cytoc 83.3 10 0.00022 29.4 7.6 60 260-320 24-83 (103)
337 PF02284 COX5A: Cytochrome c o 82.7 7.8 0.00017 30.3 6.9 60 261-321 28-87 (108)
338 PF02284 COX5A: Cytochrome c o 82.5 7.5 0.00016 30.4 6.7 60 192-251 28-87 (108)
339 PF08424 NRDE-2: NRDE-2, neces 82.3 55 0.0012 32.4 18.9 121 435-559 48-189 (321)
340 PF07575 Nucleopor_Nup85: Nup8 81.6 51 0.0011 35.8 15.6 29 134-163 145-173 (566)
341 PF02259 FAT: FAT domain; Int 81.6 61 0.0013 32.4 27.2 65 312-376 145-212 (352)
342 TIGR02561 HrpB1_HrpK type III 81.4 33 0.00071 29.2 14.5 53 150-204 22-74 (153)
343 PF11207 DUF2989: Protein of u 81.4 17 0.00037 32.7 9.7 22 523-544 176-197 (203)
344 KOG1586 Protein required for f 81.4 45 0.00097 30.8 21.7 211 296-553 3-223 (288)
345 PF06552 TOM20_plant: Plant sp 80.9 17 0.00037 32.0 9.2 27 507-535 97-123 (186)
346 KOG2066 Vacuolar assembly/sort 80.7 94 0.002 34.1 27.1 103 146-255 364-467 (846)
347 PF13374 TPR_10: Tetratricopep 80.6 4.4 9.6E-05 25.4 4.5 27 455-481 4-30 (42)
348 cd00923 Cyt_c_Oxidase_Va Cytoc 80.2 26 0.00056 27.3 9.2 60 191-250 24-83 (103)
349 PF10345 Cohesin_load: Cohesin 79.9 1E+02 0.0022 33.9 43.0 193 394-588 372-605 (608)
350 KOG2114 Vacuolar assembly/sort 79.7 1.1E+02 0.0023 34.0 25.9 143 144-304 374-516 (933)
351 COG3947 Response regulator con 78.0 66 0.0014 30.8 16.1 43 190-234 149-191 (361)
352 PF07575 Nucleopor_Nup85: Nup8 76.8 1.2E+02 0.0025 33.0 17.7 32 169-201 144-175 (566)
353 KOG1308 Hsp70-interacting prot 76.2 0.84 1.8E-05 43.9 -0.0 113 500-615 124-240 (377)
354 COG2909 MalT ATP-dependent tra 75.9 1.4E+02 0.003 33.4 29.5 230 358-587 425-686 (894)
355 COG4455 ImpE Protein of avirul 75.7 23 0.0005 32.2 8.6 77 385-462 3-81 (273)
356 COG4455 ImpE Protein of avirul 75.7 13 0.00029 33.7 7.2 76 492-568 3-80 (273)
357 PF13181 TPR_8: Tetratricopept 74.2 8.5 0.00018 22.8 4.2 28 527-554 3-30 (34)
358 PF13174 TPR_6: Tetratricopept 73.9 6.7 0.00015 22.9 3.7 27 143-169 5-31 (33)
359 TIGR02508 type_III_yscG type I 72.2 44 0.00095 26.2 8.2 85 469-563 21-105 (115)
360 PRK10941 hypothetical protein; 71.9 19 0.00041 34.4 7.9 66 529-596 185-251 (269)
361 KOG2063 Vacuolar assembly/sort 71.7 1.9E+02 0.004 32.9 16.4 26 281-306 507-532 (877)
362 PF07163 Pex26: Pex26 protein; 71.5 40 0.00086 32.0 9.4 88 144-232 89-181 (309)
363 KOG4507 Uncharacterized conser 70.7 36 0.00077 35.8 9.7 115 227-342 591-705 (886)
364 KOG0128 RNA-binding protein SA 70.4 1.8E+02 0.0039 32.3 29.0 96 173-270 112-217 (881)
365 KOG0376 Serine-threonine phosp 70.3 5.3 0.00011 40.6 3.9 106 496-605 10-117 (476)
366 KOG0551 Hsp90 co-chaperone CNS 69.2 84 0.0018 30.8 11.2 102 493-596 84-189 (390)
367 KOG0376 Serine-threonine phosp 68.6 7.8 0.00017 39.5 4.7 106 460-573 11-118 (476)
368 PF12862 Apc5: Anaphase-promot 68.3 36 0.00077 26.5 7.6 24 569-592 50-73 (94)
369 PF13929 mRNA_stabil: mRNA sta 68.3 1.2E+02 0.0025 29.3 16.1 169 400-574 113-292 (292)
370 PF12968 DUF3856: Domain of Un 67.9 65 0.0014 26.2 8.9 80 538-617 22-127 (144)
371 PF06957 COPI_C: Coatomer (COP 67.7 10 0.00022 38.6 5.3 39 555-593 293-333 (422)
372 TIGR03504 FimV_Cterm FimV C-te 67.0 13 0.00028 24.1 3.9 20 286-305 7-26 (44)
373 PF09986 DUF2225: Uncharacteri 66.1 65 0.0014 29.7 9.9 25 566-590 171-195 (214)
374 PF00637 Clathrin: Region in C 65.5 2.4 5.1E-05 36.2 0.4 47 254-300 18-64 (143)
375 PF11846 DUF3366: Domain of un 65.3 26 0.00056 31.7 7.2 35 557-591 141-175 (193)
376 KOG2297 Predicted translation 65.2 1.4E+02 0.003 28.9 18.0 17 562-578 323-339 (412)
377 PF04910 Tcf25: Transcriptiona 64.9 1.6E+02 0.0035 29.7 19.1 96 495-592 108-225 (360)
378 PF07721 TPR_4: Tetratricopept 64.8 9 0.0002 21.3 2.6 21 142-162 5-25 (26)
379 KOG2063 Vacuolar assembly/sort 63.5 2.7E+02 0.0058 31.7 27.1 62 141-202 310-374 (877)
380 COG4976 Predicted methyltransf 63.1 8.6 0.00019 35.1 3.4 61 534-596 4-65 (287)
381 TIGR02508 type_III_yscG type I 63.0 64 0.0014 25.4 7.5 78 294-378 21-98 (115)
382 PF07163 Pex26: Pex26 protein; 62.8 1.1E+02 0.0024 29.2 10.5 87 355-441 90-181 (309)
383 TIGR03504 FimV_Cterm FimV C-te 62.5 16 0.00036 23.7 3.8 19 499-517 8-26 (44)
384 PF07720 TPR_3: Tetratricopept 61.9 23 0.0005 21.8 4.2 29 564-592 5-35 (36)
385 KOG0545 Aryl-hydrocarbon recep 61.5 1.3E+02 0.0027 28.2 10.4 66 529-596 234-300 (329)
386 PF09477 Type_III_YscG: Bacter 61.3 82 0.0018 25.1 9.0 80 467-555 20-99 (116)
387 KOG4077 Cytochrome c oxidase, 60.6 59 0.0013 26.7 7.2 59 261-320 67-125 (149)
388 PF14689 SPOB_a: Sensor_kinase 60.1 29 0.00062 24.5 5.1 29 348-376 23-51 (62)
389 PRK10941 hypothetical protein; 60.0 1.3E+02 0.0029 28.8 11.1 75 422-498 185-259 (269)
390 PF10579 Rapsyn_N: Rapsyn N-te 59.6 22 0.00047 26.4 4.4 46 502-547 18-65 (80)
391 smart00386 HAT HAT (Half-A-TPR 58.9 20 0.00044 20.6 3.7 29 223-251 1-29 (33)
392 KOG2908 26S proteasome regulat 58.3 1.9E+02 0.0041 28.5 11.4 59 460-518 82-143 (380)
393 PF04190 DUF410: Protein of un 57.5 1.8E+02 0.0039 27.8 18.6 26 312-337 89-114 (260)
394 KOG0128 RNA-binding protein SA 56.7 3.2E+02 0.007 30.5 37.4 412 135-586 110-560 (881)
395 PF12862 Apc5: Anaphase-promot 55.7 94 0.002 24.0 8.0 23 531-553 47-69 (94)
396 PF11663 Toxin_YhaV: Toxin wit 55.6 12 0.00027 30.9 2.9 32 429-462 106-137 (140)
397 KOG4077 Cytochrome c oxidase, 55.1 72 0.0016 26.2 6.9 40 200-239 75-114 (149)
398 PF13762 MNE1: Mitochondrial s 55.1 1.1E+02 0.0025 26.0 8.6 82 141-222 42-128 (145)
399 PF14689 SPOB_a: Sensor_kinase 54.7 35 0.00076 24.1 4.8 23 530-552 28-50 (62)
400 KOG2471 TPR repeat-containing 54.3 2.7E+02 0.006 29.0 13.3 41 290-330 29-69 (696)
401 PF09670 Cas_Cas02710: CRISPR- 53.7 2.3E+02 0.0049 28.9 12.3 58 425-483 138-199 (379)
402 PF10366 Vps39_1: Vacuolar sor 52.1 69 0.0015 25.7 6.6 27 350-376 41-67 (108)
403 KOG0403 Neoplastic transformat 52.1 2.8E+02 0.0062 28.5 23.0 402 213-633 54-501 (645)
404 PF00244 14-3-3: 14-3-3 protei 51.8 2.1E+02 0.0045 26.9 13.5 73 542-618 143-223 (236)
405 KOG4642 Chaperone-dependent E3 51.5 2.1E+02 0.0045 26.8 11.1 84 393-480 20-105 (284)
406 PF11846 DUF3366: Domain of un 51.0 67 0.0015 28.9 7.4 34 521-554 140-173 (193)
407 PF09670 Cas_Cas02710: CRISPR- 50.4 1.9E+02 0.0042 29.4 11.2 57 390-447 138-198 (379)
408 KOG4279 Serine/threonine prote 49.1 3.5E+02 0.0075 29.9 12.6 28 569-596 375-402 (1226)
409 PF10579 Rapsyn_N: Rapsyn N-te 48.5 1.1E+02 0.0025 22.8 6.8 53 537-589 18-72 (80)
410 KOG2422 Uncharacterized conser 48.3 3.7E+02 0.008 28.7 17.1 52 500-551 352-404 (665)
411 PF11848 DUF3368: Domain of un 48.0 74 0.0016 21.0 5.2 31 255-285 14-44 (48)
412 PF14853 Fis1_TPR_C: Fis1 C-te 47.9 67 0.0015 21.8 5.0 33 532-566 8-40 (53)
413 cd00280 TRFH Telomeric Repeat 46.6 1.5E+02 0.0033 26.4 8.1 47 225-271 85-139 (200)
414 cd00280 TRFH Telomeric Repeat 46.3 46 0.001 29.4 5.0 47 506-552 85-138 (200)
415 PF14561 TPR_20: Tetratricopep 46.1 1.3E+02 0.0029 23.1 7.2 48 137-184 21-68 (90)
416 COG2178 Predicted RNA-binding 45.8 2.3E+02 0.0049 25.5 10.4 58 427-484 38-100 (204)
417 COG5108 RPO41 Mitochondrial DN 45.3 1.5E+02 0.0032 32.0 9.2 49 458-506 33-81 (1117)
418 PF13934 ELYS: Nuclear pore co 45.2 2.6E+02 0.0056 26.0 11.4 106 140-256 78-185 (226)
419 PF13762 MNE1: Mitochondrial s 45.1 2E+02 0.0043 24.6 11.7 79 212-290 42-127 (145)
420 KOG1464 COP9 signalosome, subu 45.0 2.8E+02 0.0061 26.3 24.0 49 222-270 40-92 (440)
421 PF09477 Type_III_YscG: Bacter 44.9 1.6E+02 0.0035 23.5 9.6 80 188-273 20-99 (116)
422 PF09986 DUF2225: Uncharacteri 44.7 89 0.0019 28.8 7.1 86 537-622 89-197 (214)
423 COG4941 Predicted RNA polymera 44.3 3.3E+02 0.0071 26.9 11.1 122 469-595 272-400 (415)
424 COG2909 MalT ATP-dependent tra 43.9 5.3E+02 0.011 29.2 32.4 227 289-515 426-684 (894)
425 PF10366 Vps39_1: Vacuolar sor 42.9 1.5E+02 0.0033 23.7 7.3 27 455-481 41-67 (108)
426 PHA02875 ankyrin repeat protei 42.9 3.9E+02 0.0085 27.4 14.5 19 215-233 71-89 (413)
427 KOG4642 Chaperone-dependent E3 42.7 2.9E+02 0.0063 25.9 10.3 19 251-269 86-104 (284)
428 PF11768 DUF3312: Protein of u 42.4 2.5E+02 0.0055 29.7 10.4 59 422-482 412-473 (545)
429 KOG1114 Tripeptidyl peptidase 42.0 5.8E+02 0.013 29.2 16.5 52 382-433 1230-1282(1304)
430 PF00244 14-3-3: 14-3-3 protei 41.8 1.9E+02 0.004 27.2 8.9 56 319-374 7-63 (236)
431 PF04762 IKI3: IKI3 family; I 41.6 4.1E+02 0.009 30.9 13.1 133 467-615 792-926 (928)
432 PHA02537 M terminase endonucle 41.1 3E+02 0.0066 25.6 11.2 22 572-593 190-211 (230)
433 PF12926 MOZART2: Mitotic-spin 40.7 1.6E+02 0.0035 22.4 8.7 44 195-238 29-72 (88)
434 KOG1308 Hsp70-interacting prot 40.6 18 0.0004 35.2 2.0 87 395-484 126-213 (377)
435 cd02679 MIT_spastin MIT: domai 40.2 1.6E+02 0.0034 22.1 7.0 51 572-622 20-71 (79)
436 PRK10564 maltose regulon perip 40.0 64 0.0014 31.1 5.4 39 244-282 258-296 (303)
437 PF07064 RIC1: RIC1; InterPro 39.8 3.4E+02 0.0074 25.9 14.7 65 530-594 184-254 (258)
438 KOG2300 Uncharacterized conser 39.8 4.6E+02 0.01 27.4 35.4 161 396-562 336-523 (629)
439 PF10255 Paf67: RNA polymerase 39.7 4.4E+02 0.0095 27.1 17.4 106 165-270 66-191 (404)
440 PF15297 CKAP2_C: Cytoskeleton 39.5 2.3E+02 0.005 28.1 9.1 63 507-571 120-186 (353)
441 KOG2659 LisH motif-containing 39.3 3.2E+02 0.0069 25.3 9.8 20 181-200 71-90 (228)
442 COG5191 Uncharacterized conser 39.0 36 0.00078 32.7 3.5 72 524-597 106-179 (435)
443 PRK13342 recombination factor 38.5 4.7E+02 0.01 27.0 19.1 27 256-282 243-269 (413)
444 PHA02875 ankyrin repeat protei 38.1 2.5E+02 0.0055 28.9 10.3 213 322-561 8-231 (413)
445 COG5159 RPN6 26S proteasome re 37.9 3.8E+02 0.0082 25.8 18.7 198 249-446 9-234 (421)
446 PF11663 Toxin_YhaV: Toxin wit 37.9 33 0.00071 28.6 2.7 34 535-570 105-138 (140)
447 KOG0687 26S proteasome regulat 37.7 4.1E+02 0.0089 26.2 15.6 96 314-411 105-209 (393)
448 PRK13342 recombination factor 37.4 4.8E+02 0.01 26.9 19.6 42 352-393 231-275 (413)
449 PF11848 DUF3368: Domain of un 37.4 1.2E+02 0.0026 20.0 5.2 27 361-387 15-41 (48)
450 KOG3364 Membrane protein invol 37.3 2.5E+02 0.0055 23.6 10.2 20 534-553 80-99 (149)
451 KOG0551 Hsp90 co-chaperone CNS 37.3 2E+02 0.0044 28.3 8.2 69 529-597 85-156 (390)
452 PRK10564 maltose regulon perip 36.5 70 0.0015 30.9 5.1 35 311-345 254-289 (303)
453 COG4259 Uncharacterized protei 36.2 90 0.0019 24.4 4.6 27 570-596 82-108 (121)
454 KOG3807 Predicted membrane pro 36.2 4.3E+02 0.0093 26.0 17.8 20 577-596 379-398 (556)
455 COG4715 Uncharacterized conser 36.0 5.7E+02 0.012 27.3 20.9 116 350-472 305-424 (587)
456 KOG4521 Nuclear pore complex, 35.6 8E+02 0.017 28.9 15.2 181 423-605 925-1148(1480)
457 KOG0991 Replication factor C, 35.0 3.8E+02 0.0083 25.0 12.7 38 275-313 236-273 (333)
458 PF04190 DUF410: Protein of un 34.6 4.2E+02 0.009 25.3 18.9 25 452-476 89-113 (260)
459 PRK09857 putative transposase; 34.6 2.8E+02 0.0061 27.0 9.1 60 215-274 212-271 (292)
460 KOG0292 Vesicle coat complex C 34.5 92 0.002 34.7 6.0 128 458-615 625-752 (1202)
461 PF09454 Vps23_core: Vps23 cor 34.3 1.1E+02 0.0024 21.9 4.6 44 419-463 9-52 (65)
462 COG5159 RPN6 26S proteasome re 34.2 4.4E+02 0.0094 25.4 21.7 95 282-376 129-234 (421)
463 PF11817 Foie-gras_1: Foie gra 33.8 1.8E+02 0.004 27.4 7.7 57 248-304 183-244 (247)
464 COG4755 Uncharacterized protei 33.5 1.9E+02 0.0041 23.6 6.2 57 578-634 91-151 (151)
465 PF11817 Foie-gras_1: Foie gra 33.4 2E+02 0.0042 27.3 7.8 21 496-516 184-204 (247)
466 cd08819 CARD_MDA5_2 Caspase ac 32.7 2.3E+02 0.0049 21.7 7.6 36 466-508 49-84 (88)
467 PF08311 Mad3_BUB1_I: Mad3/BUB 32.2 2.9E+02 0.0063 22.8 9.2 43 471-514 81-123 (126)
468 PRK11619 lytic murein transgly 32.2 7.4E+02 0.016 27.5 38.8 47 498-547 415-461 (644)
469 KOG1498 26S proteasome regulat 32.0 5.6E+02 0.012 26.0 17.6 89 389-484 137-243 (439)
470 PF09454 Vps23_core: Vps23 cor 31.8 1.2E+02 0.0025 21.8 4.4 50 450-502 5-54 (65)
471 KOG1839 Uncharacterized protei 31.8 6E+02 0.013 30.2 12.0 154 394-547 943-1121(1236)
472 KOG0686 COP9 signalosome, subu 31.5 5.8E+02 0.013 26.0 15.7 62 210-271 151-215 (466)
473 KOG3824 Huntingtin interacting 31.5 1.2E+02 0.0026 29.3 5.6 60 536-597 127-187 (472)
474 COG0735 Fur Fe2+/Zn2+ uptake r 31.3 2.7E+02 0.0059 23.7 7.5 48 267-315 10-57 (145)
475 COG4941 Predicted RNA polymera 31.0 3.8E+02 0.0082 26.5 8.9 121 503-628 269-403 (415)
476 PF14561 TPR_20: Tetratricopep 30.8 2.5E+02 0.0054 21.6 8.5 34 239-272 18-51 (90)
477 PRK09169 hypothetical protein; 30.7 1.3E+03 0.028 29.8 44.0 418 172-589 160-653 (2316)
478 TIGR02270 conserved hypothetic 30.3 6.3E+02 0.014 26.1 27.6 172 145-338 45-216 (410)
479 PF11768 DUF3312: Protein of u 30.1 5.6E+02 0.012 27.3 10.6 22 318-339 413-434 (545)
480 PRK14956 DNA polymerase III su 30.0 6.9E+02 0.015 26.4 12.1 36 277-312 247-282 (484)
481 PF04910 Tcf25: Transcriptiona 29.8 6E+02 0.013 25.7 22.4 56 285-340 110-166 (360)
482 COG5108 RPO41 Mitochondrial DN 29.5 2.9E+02 0.0063 30.0 8.4 90 248-340 33-130 (1117)
483 cd08819 CARD_MDA5_2 Caspase ac 29.2 2.6E+02 0.0057 21.4 7.4 14 362-375 50-63 (88)
484 KOG1839 Uncharacterized protei 28.2 1.1E+03 0.024 28.2 13.7 202 429-632 943-1169(1236)
485 PF10255 Paf67: RNA polymerase 27.7 6.9E+02 0.015 25.7 12.7 62 279-340 123-191 (404)
486 COG5187 RPN7 26S proteasome re 27.6 5.7E+02 0.012 24.7 15.0 96 313-410 115-219 (412)
487 KOG4279 Serine/threonine prote 27.6 8.9E+02 0.019 27.0 13.2 116 229-349 183-321 (1226)
488 KOG2062 26S proteasome regulat 27.6 8.9E+02 0.019 27.0 29.2 126 462-594 510-639 (929)
489 KOG2297 Predicted translation 27.4 5.9E+02 0.013 24.9 19.7 170 137-333 164-341 (412)
490 PRK13341 recombination factor 27.1 9.4E+02 0.02 27.1 18.3 149 259-421 170-336 (725)
491 COG1775 HgdB Benzoyl-CoA reduc 27.0 2.2E+02 0.0048 28.4 6.8 83 539-629 143-234 (379)
492 KOG0686 COP9 signalosome, subu 26.9 7E+02 0.015 25.5 14.6 64 244-307 151-216 (466)
493 KOG2300 Uncharacterized conser 26.7 7.6E+02 0.017 25.9 38.2 180 430-615 335-552 (629)
494 KOG0890 Protein kinase of the 26.7 1.5E+03 0.032 29.3 35.0 321 248-590 1388-1732(2382)
495 KOG3824 Huntingtin interacting 26.2 54 0.0012 31.5 2.4 27 571-597 127-153 (472)
496 PF02847 MA3: MA3 domain; Int 26.0 3.2E+02 0.0069 21.7 6.9 22 318-339 7-28 (113)
497 KOG1114 Tripeptidyl peptidase 25.8 1.1E+03 0.023 27.3 15.3 125 430-577 1159-1284(1304)
498 KOG3677 RNA polymerase I-assoc 25.0 6E+02 0.013 26.0 9.3 61 279-340 236-299 (525)
499 PF11123 DNA_Packaging_2: DNA 24.8 2.3E+02 0.0051 20.7 4.8 33 224-256 12-44 (82)
500 PF09868 DUF2095: Uncharacteri 24.6 3.1E+02 0.0066 22.2 5.8 44 318-362 66-109 (128)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.4e-70 Score=614.91 Aligned_cols=516 Identities=18% Similarity=0.221 Sum_probs=479.5
Q ss_pred HHHHhhcCCCCChhHHHHHHHHhccCchhHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 006630 92 ELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQL 171 (638)
Q Consensus 92 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~ 171 (638)
+..+...|+.++..+++.+|..|+++|++..+...|.... .+|..+||+||.+|++.|++++|+++|++|...+ ..
T Consensus 210 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~---~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-~~ 285 (857)
T PLN03077 210 HAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP---RRDCISWNAMISGYFENGECLEGLELFFTMRELS-VD 285 (857)
T ss_pred HHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC---CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-CC
Confidence 3344445666666667777778888887777777676543 4688899999999999999999999999998876 45
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 006630 172 ITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLY 251 (638)
Q Consensus 172 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 251 (638)
||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|++|+.+|+++|++++|.++|++|.. ||..+||.+|.
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~ 362 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMIS 362 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999974 59999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHH
Q 006630 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331 (638)
Q Consensus 252 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 331 (638)
+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.||++|+++|++++
T Consensus 363 ~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~ 442 (857)
T PLN03077 363 GYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDK 442 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411 (638)
Q Consensus 332 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 411 (638)
|.++|++|. .+|.++|+++|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|.++.+.+++..+.+
T Consensus 443 A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~ 517 (857)
T PLN03077 443 ALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR 517 (857)
T ss_pred HHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH
Confidence 999999998 57999999999999999999999999999986 5999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHH
Q 006630 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491 (638)
Q Consensus 412 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~ 491 (638)
.|+.+|..++++||++|+++|++++|.++|+.+ .||..+||+||.+|++.|+.++|+++|++|.+.|+ .||..
T Consensus 518 ~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~--~Pd~~ 590 (857)
T PLN03077 518 TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV--NPDEV 590 (857)
T ss_pred hCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCcc
Confidence 999999999999999999999999999999987 58999999999999999999999999999999998 79999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006630 492 TLKALLNSLLRAQKVEMAKDVWSCIV-TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570 (638)
Q Consensus 492 ~~~~ll~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 570 (638)
||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|++|+++|++.|++++|.+++++| ++.||..+|.+|+.+|
T Consensus 591 T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac 667 (857)
T PLN03077 591 TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNAC 667 (857)
T ss_pred cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHH
Confidence 99999999999999999999999998 5699999999999999999999999999999988 4799999999999999
Q ss_pred HhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhHHHHHhhhhhhhhhh-hhhhcc
Q 006630 571 KKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLKEKAKKQVDGRKRRA-RQRRWG 629 (638)
Q Consensus 571 ~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~ 629 (638)
...|+.+.|+.+.+++++++|+++..+ ++|+..|+|++|.++++.|++++-++ +...|.
T Consensus 668 ~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~i 731 (857)
T PLN03077 668 RIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWV 731 (857)
T ss_pred HHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEE
Confidence 999999999999999999999998875 79999999999999999999988754 444453
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.5e-68 Score=584.61 Aligned_cols=478 Identities=18% Similarity=0.272 Sum_probs=456.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHH
Q 006630 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGC 214 (638)
Q Consensus 135 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ 214 (638)
..+..+|+++|..|.+.|++++|+++|+.|...++..++..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 34566899999999999999999999999998776678999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006630 215 LLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294 (638)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 294 (638)
|+++|+++|++++|.++|++|.+ ||..+||.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 99999999999999999999975 699999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006630 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374 (638)
Q Consensus 295 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 374 (638)
+.+.+++..+.+.|+.||..+|++||++|+++|++++|.++|++|. ++|.++||+||.+|++.|++++|+++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999997 679999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 006630 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454 (638)
Q Consensus 375 ~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 454 (638)
.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|+++|++++|.++|++|. .||..
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~ 392 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLI 392 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997 47888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHH
Q 006630 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT-KGCELNVYAWTIWIH 533 (638)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~li~ 533 (638)
+||+||.+|++.|+.++|+++|++|.+.|+ .||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|++|++
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~--~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGV--APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 999999999999999999999999999998 79999999999999999999999999999986 499999999999999
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhH
Q 006630 534 SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLK 609 (638)
Q Consensus 534 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A 609 (638)
+|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|+.+++++++++|++...+ ++|++.|+|++|
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHH
Confidence 999999999999998765 6799999999999999999999999999999999999987664 899999999999
Q ss_pred HHHHhhhhhhhhh-hhhhhc
Q 006630 610 EKAKKQVDGRKRR-ARQRRW 628 (638)
Q Consensus 610 ~~~~~~~~~~~~~-~~~~~~ 628 (638)
.++++.|++++.+ .+...|
T Consensus 548 ~~v~~~m~~~g~~k~~g~s~ 567 (697)
T PLN03081 548 AKVVETLKRKGLSMHPACTW 567 (697)
T ss_pred HHHHHHHHHcCCccCCCeeE
Confidence 9999999988864 344445
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.4e-66 Score=569.68 Aligned_cols=512 Identities=18% Similarity=0.263 Sum_probs=464.1
Q ss_pred hhHHHHHHHHhccCchhHHHHHHHhhh-CCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 006630 104 PGLTERVINRCGDAGNLGYRYYMWASK-QPN-YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILM 181 (638)
Q Consensus 104 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li 181 (638)
...+..++..|++.|.+..++..+..+ ..+ ..++...++.++..|.+.|.+++|+.+|+.|.. ++..+|+.++
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL 444 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLM 444 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHH
Confidence 345677788888889887665555433 234 457888889999999999999999999999863 6899999999
Q ss_pred HHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHhcCCHH
Q 006630 182 RRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLV 260 (638)
Q Consensus 182 ~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~ 260 (638)
.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+ +..||..+|+.||.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 99999999999999999999999999999999999999999999999999999975 57899999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH--cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006630 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR--KGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338 (638)
Q Consensus 261 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 338 (638)
+|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+++|.+|++.|++++|.++|++
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 57899999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006630 339 MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418 (638)
Q Consensus 339 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 418 (638)
|.+.|+.|+..+|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.||.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHH
Q 006630 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498 (638)
Q Consensus 419 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~ 498 (638)
.+|+.||.+|+++|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|+++|++|...|+ .|+..||+.++.
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi--~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL--CPNTITYSILLV 762 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998 799999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-----------------------cCCHHHHHHHHHHHHhCC
Q 006630 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS-----------------------NGHVKEACSYCLDMMDAD 555 (638)
Q Consensus 499 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-----------------------~g~~~~A~~~~~~m~~~~ 555 (638)
+|++.|++++|.++|++|.+.|+.||..+|++++..+.+ .+..++|+.+|++|++.|
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~G 842 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAG 842 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999876432 123578999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh--cccccc-hhhhhhhh-hhHHHHHhhhhhhhhhh
Q 006630 556 VMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE--RQITFK-MYKRRGER-DLKEKAKKQVDGRKRRA 623 (638)
Q Consensus 556 ~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~-~y~~~g~~-~~A~~~~~~~~~~~~~~ 623 (638)
+.||..||..++.++.+.++.+.+..+++... ..|. +...++ +..-.|++ ++|..+++.+..++...
T Consensus 843 i~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p 913 (1060)
T PLN03218 843 TLPTMEVLSQVLGCLQLPHDATLRNRLIENLG-ISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVP 913 (1060)
T ss_pred CCCCHHHHHHHHHHhcccccHHHHHHHHHHhc-cCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCC
Confidence 99999999999977778788888877776543 2232 223333 22333554 57999999988776543
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.1e-67 Score=589.75 Aligned_cols=509 Identities=19% Similarity=0.261 Sum_probs=468.7
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHhccCchhHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 006630 91 LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQ 170 (638)
Q Consensus 91 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 170 (638)
++..+...+..++..+.+.++..|++.|++..++..|.... .+|.++||++|.+|++.|++++|+++|++|...+ .
T Consensus 108 ~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~---~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g-~ 183 (857)
T PLN03077 108 VCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP---ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG-V 183 (857)
T ss_pred HHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC---CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC-C
Confidence 44444456666777778899999999999888887777653 5789999999999999999999999999999875 5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 006630 171 LITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLL 250 (638)
Q Consensus 171 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 250 (638)
.||..||+.++++|+..+++..+.+++..|.+.|+.||..+++.||.+|+++|++++|.++|++|.. +|..+||+||
T Consensus 184 ~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li 260 (857)
T PLN03077 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMI 260 (857)
T ss_pred CCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999985 5999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH
Q 006630 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKME 330 (638)
Q Consensus 251 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 330 (638)
.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.|+.+|++.|+++
T Consensus 261 ~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~ 340 (857)
T PLN03077 261 SGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG 340 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410 (638)
Q Consensus 331 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 410 (638)
+|.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.
T Consensus 341 ~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~ 416 (857)
T PLN03077 341 EAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAE 416 (857)
T ss_pred HHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHH
Confidence 9999999997 689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcH
Q 006630 411 KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490 (638)
Q Consensus 411 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~ 490 (638)
+.|+.|+..+|+.||++|+++|++++|.++|++|.+ +|..+|+.||.+|++.|+.++|+.+|++|... + .|+.
T Consensus 417 ~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~-~--~pd~ 489 (857)
T PLN03077 417 RKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-L--KPNS 489 (857)
T ss_pred HhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC-C--CCCH
Confidence 999999999999999999999999999999999974 67789999999999999999999999999864 4 6999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------------------------------CCCHHHHHHHHHHHHccCC
Q 006630 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGC------------------------------ELNVYAWTIWIHSLFSNGH 540 (638)
Q Consensus 491 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~------------------------------~p~~~~~~~li~~~~~~g~ 540 (638)
.||..++.+|++.|+++.+.+++..+.+.|+ .||..+||+||.+|+++|+
T Consensus 490 ~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~ 569 (857)
T PLN03077 490 VTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGK 569 (857)
T ss_pred hHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCC
Confidence 9999888887777777777777766665543 5688899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc------cchhhhhhhhhhHHHHHh
Q 006630 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT------FKMYKRRGERDLKEKAKK 614 (638)
Q Consensus 541 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~------~~~y~~~g~~~~A~~~~~ 614 (638)
.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++++.+.+..+-.|.. +++|.+.|++++|.++++
T Consensus 570 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~ 649 (857)
T PLN03077 570 GSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN 649 (857)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998654433332 489999999999999999
Q ss_pred hhh
Q 006630 615 QVD 617 (638)
Q Consensus 615 ~~~ 617 (638)
+|.
T Consensus 650 ~m~ 652 (857)
T PLN03077 650 KMP 652 (857)
T ss_pred HCC
Confidence 874
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.2e-64 Score=551.78 Aligned_cols=493 Identities=17% Similarity=0.269 Sum_probs=456.2
Q ss_pred HHHHHHhhcCCC-CChhHHHHHHHHhccCchhHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 006630 90 KLELALQHSGVV-LRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK 168 (638)
Q Consensus 90 ~~~~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 168 (638)
++...|...|+. ++......++..|.+.|.+..++..+..+. .|+..+|+.++.+|++.|++++|+++|++|.+.+
T Consensus 391 ~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~---~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G 467 (1060)
T PLN03218 391 DLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR---NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAG 467 (1060)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC---CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC
Confidence 344556666764 333345667888998888877766555443 3899999999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhc-cCCCCHHHHH
Q 006630 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFT 247 (638)
Q Consensus 169 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~ 247 (638)
. .++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+ +..||..+|+
T Consensus 468 l-~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYn 546 (1060)
T PLN03218 468 L-KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFN 546 (1060)
T ss_pred C-CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 4 5899999999999999999999999999999999999999999999999999999999999999975 6899999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 006630 248 SLLYGWCKEGKLVEAKYVLVQMKD--AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR 325 (638)
Q Consensus 248 ~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 325 (638)
.||.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++
T Consensus 547 sLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k 626 (1060)
T PLN03218 547 ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ 626 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 999999999999999999999986 678999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006630 326 MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405 (638)
Q Consensus 326 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 405 (638)
.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++
T Consensus 627 ~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~l 706 (1060)
T PLN03218 627 KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALEL 706 (1060)
T ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006630 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485 (638)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 485 (638)
|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|.+|.+.|+
T Consensus 707 f~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi- 785 (1060)
T PLN03218 707 YEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGI- 785 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcHHHHHHHHHHHHH----c-------------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 006630 486 SAPQYGTLKALLNSLLR----A-------------------QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542 (638)
Q Consensus 486 ~~p~~~~~~~ll~~~~~----~-------------------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 542 (638)
.|+..+|+.++..|.+ + +..++|..+|++|.+.|+.||..+|+.++.+++..+..+
T Consensus 786 -~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~ 864 (1060)
T PLN03218 786 -KPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDAT 864 (1060)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHH
Confidence 7999999999876542 1 124679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 006630 543 EACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590 (638)
Q Consensus 543 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 590 (638)
.+..+++.|...+..|+..+|+++++++.+. .++|..+++++.+.+
T Consensus 865 ~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 865 LRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 9999999998888899999999999998432 468999999999876
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.9e-58 Score=504.13 Aligned_cols=468 Identities=16% Similarity=0.205 Sum_probs=426.1
Q ss_pred ChhHHHHHHHHhccCchhHH--HHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHH
Q 006630 103 RPGLTERVINRCGDAGNLGY--RYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVIL 180 (638)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~l 180 (638)
+....+.+|..+.+.|.... .+|.|.....++.|+..+|+.++.++++.++++.+.+++..|.+.+ ..++..+++.+
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~L 164 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNRV 164 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHHH
Confidence 33356778888888887654 4555655445578999999999999999999999999999999876 45799999999
Q ss_pred HHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHhcCCH
Q 006630 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKL 259 (638)
Q Consensus 181 i~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~ 259 (638)
+..|++.|++++|.++|++|. .||.++||+++.+|++.|++++|.++|++|.+ +..|+..+|+.++.++++.|..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 999999999999999999997 58999999999999999999999999999964 5789999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006630 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM 339 (638)
Q Consensus 260 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 339 (638)
+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+ +|..+||.||.+|++.|++++|.++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999864 58999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006630 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419 (638)
Q Consensus 340 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 419 (638)
.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|+.|. .||..
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~ 392 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLI 392 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986 47889
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCCcHHHHHHHHH
Q 006630 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG-RGLLSAPQYGTLKALLN 498 (638)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~p~~~~~~~ll~ 498 (638)
+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+ .|+..+|+.+++
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~--~p~~~~y~~li~ 470 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI--KPRAMHYACMIE 470 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC--CCCccchHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986 476 699999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhcCHH
Q 006630 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLYNRQ 577 (638)
Q Consensus 499 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~ 577 (638)
+|++.|++++|.++++++ ++.|+..+|++++.+|..+|+++.|..+++++.+ +.|+ ..+|..+++.|.+.|+++
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHH
Confidence 999999999999998765 5789999999999999999999999999998874 4564 568999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 006630 578 IAAEITEKVRKMA 590 (638)
Q Consensus 578 ~A~~~~~~~~~~~ 590 (638)
+|.++++++.+.+
T Consensus 546 ~A~~v~~~m~~~g 558 (697)
T PLN03081 546 EAAKVVETLKRKG 558 (697)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999988765
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.2e-31 Score=305.82 Aligned_cols=469 Identities=12% Similarity=0.060 Sum_probs=304.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHH
Q 006630 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL 216 (638)
Q Consensus 137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li 216 (638)
+...|..+...+...|++++|...|+.+....|. .......++..+.+.|++++|+.+++.+.... +.+..++..+.
T Consensus 396 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 472 (899)
T TIGR02917 396 NAAARTQLGISKLSQGDPSEAIADLETAAQLDPE--LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLG 472 (899)
T ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc--chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHH
Confidence 3444444445555555555555555554444332 22233334445555555555555555554332 34555666666
Q ss_pred HHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhH
Q 006630 217 DALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296 (638)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 296 (638)
..|...|++++|...|+++.+..+.+...+..++..+...|++++|.+.|+++.+.+ +.+..++..+...+.+.|+.++
T Consensus 473 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 551 (899)
T TIGR02917 473 AIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEE 551 (899)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666666655555566666666666666666666666666666543 3455566666666666677777
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376 (638)
Q Consensus 297 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (638)
|...++++.+.+ +.+...+..++..|.+.|++++|..+++.+.+.. +.+...|..+...|...|++++|+..|+.+.+
T Consensus 552 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 629 (899)
T TIGR02917 552 AVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629 (899)
T ss_pred HHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777766666543 2345556666677777777777777777766543 44566777777777777777777777777766
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006630 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456 (638)
Q Consensus 377 ~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 456 (638)
... .+...+..+...+...|++++|..+++.+.+.. +.+...+..++..+...|++++|.++++.+.+.. +++...+
T Consensus 630 ~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 706 (899)
T TIGR02917 630 LQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGF 706 (899)
T ss_pred hCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHH
Confidence 432 245566666777777777777777777776653 4456667777777777777777777777777665 5566677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006630 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536 (638)
Q Consensus 457 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 536 (638)
..+...+...|++++|++.|+++.... |+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+...|.
T Consensus 707 ~~~~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~ 781 (899)
T TIGR02917 707 ELEGDLYLRQKDYPAAIQAYRKALKRA----PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYL 781 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC----CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 777777777777777777777777664 343566667777777777777777777776653 335667777777777
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhHHHH
Q 006630 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLKEKA 612 (638)
Q Consensus 537 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~~~ 612 (638)
..|++++|...|+++++.. .++..++..+...+...|+ ++|+..++++++..|+++..+ .+|...|++++|.+.
T Consensus 782 ~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 859 (899)
T TIGR02917 782 AQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPL 859 (899)
T ss_pred HCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 7788888888877777643 3456667777777777777 667777777777777776664 456677777777777
Q ss_pred Hhhhhhhhh
Q 006630 613 KKQVDGRKR 621 (638)
Q Consensus 613 ~~~~~~~~~ 621 (638)
++++.+..+
T Consensus 860 ~~~a~~~~~ 868 (899)
T TIGR02917 860 LRKAVNIAP 868 (899)
T ss_pred HHHHHhhCC
Confidence 777665544
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.1e-31 Score=304.61 Aligned_cols=466 Identities=13% Similarity=0.104 Sum_probs=414.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHH
Q 006630 136 HSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCL 215 (638)
Q Consensus 136 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l 215 (638)
.....+..++..+.+.|++++|..+++.+....|. ++.++..+...+...|++++|.+.|+++.+.. +.+...+..+
T Consensus 429 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 505 (899)
T TIGR02917 429 ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPD--NASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANL 505 (899)
T ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHH
Confidence 34456777889999999999999999999887654 67789999999999999999999999998764 4567788889
Q ss_pred HHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHh
Q 006630 216 LDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295 (638)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 295 (638)
...+...|++++|.+.|+++....+.+..++..+...+.+.|+.++|...+.++.+.+ +.+...+..++..+...|+++
T Consensus 506 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 584 (899)
T TIGR02917 506 ARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLK 584 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHH
Confidence 9999999999999999999988888899999999999999999999999999998875 556778889999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375 (638)
Q Consensus 296 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 375 (638)
+|.++++.+.+.. +.+..+|..+...|.+.|++++|...|+++.+.. +.+...+..+...|.+.|++++|...|+++.
T Consensus 585 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 585 KALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998763 4578899999999999999999999999998764 4467889999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006630 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455 (638)
Q Consensus 376 ~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 455 (638)
+... .+..++..+...+...|++++|.++++.+.+.. +.+...+..+...+.+.|++++|...|+.+...+ |+..+
T Consensus 663 ~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~ 738 (899)
T TIGR02917 663 ELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQN 738 (899)
T ss_pred hcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchH
Confidence 8643 367889999999999999999999999998875 6677888899999999999999999999999874 55578
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006630 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535 (638)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 535 (638)
+..++..+...|++++|.+.++++.... +.+..++..+...|...|+.++|...|+++.+.. +++...++.++..+
T Consensus 739 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~ 814 (899)
T TIGR02917 739 AIKLHRALLASGNTAEAVKTLEAWLKTH---PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLY 814 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 8889999999999999999999999876 4677888899999999999999999999999874 45788899999999
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhHHH
Q 006630 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLKEK 611 (638)
Q Consensus 536 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~~ 611 (638)
...|+ .+|+.+++++.+.. .-++.++..+...+...|++++|..+++++++.+|+++.++ .+|.+.|++++|.+
T Consensus 815 ~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 815 LELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred HhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 99999 88999999998752 23456678888899999999999999999999999988774 68999999999999
Q ss_pred HHhhhh
Q 006630 612 AKKQVD 617 (638)
Q Consensus 612 ~~~~~~ 617 (638)
+++++.
T Consensus 893 ~~~~~~ 898 (899)
T TIGR02917 893 ELDKLL 898 (899)
T ss_pred HHHHHh
Confidence 999874
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=7.3e-23 Score=236.30 Aligned_cols=497 Identities=11% Similarity=0.009 Sum_probs=275.4
Q ss_pred ChhHHHHHHHHhccCchhHHHH---HHHhhhCCCCCCCHHHH----------------HHHHHHHHhcCChhHHHHHHHH
Q 006630 103 RPGLTERVINRCGDAGNLGYRY---YMWASKQPNYVHSYDVY----------------RALIKSLSKMRKFGAVWALMEE 163 (638)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----------------~~li~~~~~~~~~~~A~~~~~~ 163 (638)
+|.........+...|+...+. ..|....|+ +...+ -.+.+.+.+.|++++|.+.|+.
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~---~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~ 137 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD---SNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDK 137 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3445555555566667665443 334433333 32222 2334467778888888888888
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCC-
Q 006630 164 MRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPS- 242 (638)
Q Consensus 164 m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~- 242 (638)
+...+|.... .............|+.++|++.++++.+.. +.+...+..+...+...|+.++|+..|+++....+.+
T Consensus 138 ~l~~~p~~~~-la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~ 215 (1157)
T PRK11447 138 LFNGAPPELD-LAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRD 215 (1157)
T ss_pred HccCCCCChH-HHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchH
Confidence 8766543221 111111122224578888888888887763 4456677778888888888888888888874321100
Q ss_pred -------------------HHHHH----------------------------------HHHHHHHhcCCHHHHHHHHHHH
Q 006630 243 -------------------LRHFT----------------------------------SLLYGWCKEGKLVEAKYVLVQM 269 (638)
Q Consensus 243 -------------------~~~~~----------------------------------~li~~~~~~g~~~~A~~~~~~m 269 (638)
...+. .....+...|++++|+..|++.
T Consensus 216 ~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~a 295 (1157)
T PRK11447 216 AAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQA 295 (1157)
T ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 00000 1123345567777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCC-CHHhH------------HHHHHHHHhcCCHHHHHHHH
Q 006630 270 KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP-NANSY------------TVLIQALCRMEKMEEANRAF 336 (638)
Q Consensus 270 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~------------~~li~~~~~~g~~~~A~~~~ 336 (638)
++.. +.+...+..+...+.+.|++++|...|++..+..... +...+ ......+.+.|++++|+..|
T Consensus 296 L~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~ 374 (1157)
T PRK11447 296 VRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLY 374 (1157)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7653 3356667777777777777777777777776653221 11111 11234556677777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--
Q 006630 337 VEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC-- 414 (638)
Q Consensus 337 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-- 414 (638)
+++.+.. +.+...+..+...+...|++++|++.|++..+.... +...+..+...+. .++.++|..+++.+.....
T Consensus 375 ~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 375 QQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHH
Confidence 7777653 234556666777777777777777777777764322 3444444444432 2334444444433221100
Q ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 006630 415 ------VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488 (638)
Q Consensus 415 ------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p 488 (638)
......+..+...+...|++++|+..|++..+.. +-+...+..+...|.+.|++++|...++++.+... .
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P---~ 527 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP---N 527 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---C
Confidence 0001122333444555666666666666666654 33445556666666666666666666666665431 1
Q ss_pred cHHHHHH--------------------------------------------HHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 006630 489 QYGTLKA--------------------------------------------LLNSLLRAQKVEMAKDVWSCIVTKGCELN 524 (638)
Q Consensus 489 ~~~~~~~--------------------------------------------ll~~~~~~g~~~~A~~~~~~~~~~~~~p~ 524 (638)
+...+.. +.+.+...|+.++|..+++. .+.+
T Consensus 528 ~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~ 602 (1157)
T PRK11447 528 DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPS 602 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCC
Confidence 2111111 12223334444444444331 1223
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----ch
Q 006630 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KM 599 (638)
Q Consensus 525 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~ 599 (638)
...+..+...+.+.|++++|+..|++.++. .| +...+..+...+...|++++|++.++++++..|+++... .+
T Consensus 603 ~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~ 680 (1157)
T PRK11447 603 TRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALA 680 (1157)
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 444555666666666666666666666654 23 345566666666666666666666666666666555442 45
Q ss_pred hhhhhhhhhHHHHHhhhhhh
Q 006630 600 YKRRGERDLKEKAKKQVDGR 619 (638)
Q Consensus 600 y~~~g~~~~A~~~~~~~~~~ 619 (638)
|...|++++|.++++++...
T Consensus 681 ~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 681 WAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHhCCCHHHHHHHHHHHhhh
Confidence 56666666666666665443
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=3.3e-22 Score=230.87 Aligned_cols=488 Identities=10% Similarity=0.024 Sum_probs=329.4
Q ss_pred hccCchhHHHHHHHhhhCCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006630 114 CGDAGNLGYRYYMWASKQPNYVHSYDV-YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKK 192 (638)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~ 192 (638)
+...|+...+...+.....+.+++... ...+.......|++++|++.|+++....|. +...+..+...+...|+.++
T Consensus 122 l~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~--~~~~~~~LA~ll~~~g~~~e 199 (1157)
T PRK11447 122 LATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG--NTGLRNTLALLLFSSGRRDE 199 (1157)
T ss_pred HHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHccCCHHH
Confidence 455566666666555544444444321 111112223458888899999988888766 56677778888888888888
Q ss_pred HHHHHHhchhCCC------------------C--------------CCHHH---------------------HHHHHHHH
Q 006630 193 AIEVLDEMPKYGC------------------E--------------PDEFV---------------------FGCLLDAL 219 (638)
Q Consensus 193 A~~~~~~m~~~g~------------------~--------------~~~~~---------------------~~~li~~~ 219 (638)
|++.++++.+... . |+... ...+...+
T Consensus 200 Al~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~ 279 (1157)
T PRK11447 200 GFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAA 279 (1157)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 8888887654210 0 10000 00123456
Q ss_pred HhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHH------------HHHHH
Q 006630 220 CKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEP-DIVVY------------NNLLS 286 (638)
Q Consensus 220 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~------------~~ll~ 286 (638)
...|++++|+..|++.....|.+...+..+...|.+.|++++|+..|++..+..... ....| .....
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 678999999999999888778889999999999999999999999999988764221 11112 12244
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--------
Q 006630 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF-------- 358 (638)
Q Consensus 287 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~-------- 358 (638)
.+.+.|++++|.+.|+++.+.. +.+...+..+...|...|++++|++.|+++.+.. +.+...+..+...|
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A 437 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKA 437 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHH
Confidence 6678899999999999998874 3356677888899999999999999999988763 22344444444333
Q ss_pred ----------------------------------HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006630 359 ----------------------------------CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404 (638)
Q Consensus 359 ----------------------------------~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 404 (638)
...|++++|++.|++..+..+. +...+..+...+.+.|++++|..
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 3445555555555555554322 33444455555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHhcCCHHHHHHH
Q 006630 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD---------SFVVMVHGFLGQGCLIEACEY 475 (638)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---------~~~~li~~~~~~g~~~~A~~~ 475 (638)
.++.+.+.. +.+...+..+...+.+.|+.++|+..++.+......++.. .+..+...+...|+.++|+.+
T Consensus 517 ~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 517 LMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 555555432 2233333333334445555555555555543222111111 122344556677777777777
Q ss_pred HHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006630 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555 (638)
Q Consensus 476 ~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 555 (638)
++ .. +++...+..+...+.+.|++++|+..|+++++.. +.+...+..++..|...|++++|++.++..++.
T Consensus 596 l~----~~---p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~- 666 (1157)
T PRK11447 596 LR----QQ---PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT- 666 (1157)
T ss_pred HH----hC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence 65 12 3455567778889999999999999999999873 336788999999999999999999999988754
Q ss_pred CCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccc------cc----chhhhhhhhhhHHHHHhhhh
Q 006630 556 VMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI------TF----KMYKRRGERDLKEKAKKQVD 617 (638)
Q Consensus 556 ~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~----~~y~~~g~~~~A~~~~~~~~ 617 (638)
.|+ ..++..+..++...|++++|.++++++++..|+++. .+ .+|...|++++|.+.|++..
T Consensus 667 -~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 667 -ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred -CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 454 556777888889999999999999999998877654 22 57889999999999999854
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=1e-23 Score=206.12 Aligned_cols=438 Identities=13% Similarity=0.087 Sum_probs=363.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHH
Q 006630 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALC 220 (638)
Q Consensus 141 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 220 (638)
-..|.+-+.+.|++.+|.+.-...-..+|. +......+-..+....+.+...+--....+.. +.-..+|..+...+-
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t--~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPT--NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCC--cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH
Confidence 345666777889999999988777777654 44444445566667777776665544444432 445688999999999
Q ss_pred hCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHhHHHH
Q 006630 221 KNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN-NLLSGYAQMGKMTDAFE 299 (638)
Q Consensus 221 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~g~~~~a~~ 299 (638)
..|++++|+.+++.+.+..|..+..|..+..++...|+.+.|.+.|.+.++. .|+..... .+....-..|++++|..
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 9999999999999999887889999999999999999999999999999876 56655443 34445556799999999
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006630 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD-VVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378 (638)
Q Consensus 300 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 378 (638)
.+.+.++... -=.+.|+.|...+-..|+...|++.|++..+. .|+ ...|-.|...|...+.+++|+..+.+....
T Consensus 206 cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l- 281 (966)
T KOG4626|consen 206 CYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL- 281 (966)
T ss_pred HHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-
Confidence 9988887622 23567889999999999999999999999876 454 468888999999999999999999888764
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006630 379 ILP-NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV 457 (638)
Q Consensus 379 ~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 457 (638)
.| ..+.+..+...|...|.++.|+..+++.++.. +--...|+.|..++-..|++.+|.+.|++..... +....+.+
T Consensus 282 -rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~ 358 (966)
T KOG4626|consen 282 -RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMN 358 (966)
T ss_pred -CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHH
Confidence 44 45677788888899999999999999998863 3346789999999999999999999999998875 45567899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 006630 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN-VYAWTIWIHSLF 536 (638)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~ 536 (638)
.|...|...|.+++|..+|....+-. +--....+.|...|-.+|++++|+..|+++++. .|+ ..+|+.+...|-
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~v~---p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALEVF---PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhhC---hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHH
Confidence 99999999999999999999998875 234567888999999999999999999999884 666 568999999999
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 537 SNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 537 ~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
..|+.+.|++.+.+.+.. .|. ...++.|...|...|+..+|++.++.++++.|+.|.++
T Consensus 434 e~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~ 493 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAY 493 (966)
T ss_pred HhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhh
Confidence 999999999999998854 675 45688999999999999999999999999999999985
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=1.8e-21 Score=190.59 Aligned_cols=447 Identities=14% Similarity=0.094 Sum_probs=351.9
Q ss_pred HHHHHHHhccCchhHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 006630 107 TERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFAS 186 (638)
Q Consensus 107 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 186 (638)
...+-....+.|+...+..+-...-...+.+....-.+-.++.+..+++....--....+..|. -.++|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q--~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ--GAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccch--HHHHHHHHHHHHHH
Confidence 3445556666777665554433221111222333334445677777777666554455555544 56789989999999
Q ss_pred cCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006630 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVL 266 (638)
Q Consensus 187 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 266 (638)
.|++++|+.+++.+++.. +.....|..+..++...|+.+.|...|.+..+-.|......+.+...+-..|++++|...+
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHH
Confidence 999999999999998873 3456789999999999999999999998887765555555666677777789999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006630 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN-ANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345 (638)
Q Consensus 267 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 345 (638)
.+.++.. +--.+.|..|...+-..|+...|++-|++..+. .|+ ...|-.|...|...+.+++|...+.+.... .
T Consensus 208 lkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--r 282 (966)
T KOG4626|consen 208 LKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--R 282 (966)
T ss_pred HHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--C
Confidence 9988763 233567899999999999999999999999875 444 457888999999999999999999988765 4
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006630 346 A-DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424 (638)
Q Consensus 346 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 424 (638)
| ..+.+..|...|...|..|-|+..+++.++..+. -...|+.+..++-..|++.+|.+.+....... +......+.|
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NL 360 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNL 360 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHH
Confidence 4 4567777888899999999999999999985332 36789999999999999999999999998763 5566788899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcC
Q 006630 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQ 504 (638)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g 504 (638)
...|...|.+++|..+|....+.. +--...++.|...|-++|++++|+..|++.++-. +.-...|+.+.+.|-..|
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~---P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK---PTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC---chHHHHHHhcchHHHHhh
Confidence 999999999999999999988753 3334688999999999999999999999999875 234668899999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 006630 505 KVEMAKDVWSCIVTKGCELN-VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP-DTFAKLMRGLK 571 (638)
Q Consensus 505 ~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~ 571 (638)
+++.|.+.+.+++.. .|. ....+.|...|...|+..+|++-|++.++. +||. ..|-.++.+..
T Consensus 437 ~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCLQ 501 (966)
T ss_pred hHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHHH
Confidence 999999999999875 454 567899999999999999999999998854 6763 34555555443
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=5.7e-20 Score=199.53 Aligned_cols=465 Identities=12% Similarity=-0.005 Sum_probs=308.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHH
Q 006630 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219 (638)
Q Consensus 140 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 219 (638)
.+......|.+.|++++|+..|++.....| ++..|..+..+|.+.|++++|+..++..++.. +.+..++..+..+|
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p---~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKP---DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 345566667777777777777777766554 34566667777777777777777777776653 33456677777777
Q ss_pred HhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 006630 220 CKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299 (638)
Q Consensus 220 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 299 (638)
...|++++|+.-|..+....+.+......++.-+.. ..+........+.. +++...+..+.. +...........
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~ 278 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPA 278 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchh
Confidence 777777777776655443222222222222221111 12222222222221 122222222222 221111111111
Q ss_pred HHHHHHHcCCCCCH-HhHHHHHHH---HHhcCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006630 300 LLKEMRRKGCDPNA-NSYTVLIQA---LCRMEKMEEANRAFVEMERSG-CEA-DVVTYTTLISGFCKSRKIDRCYEILDS 373 (638)
Q Consensus 300 ~~~~~~~~g~~~~~-~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 373 (638)
-+....+ ..++. ..+..+... ....+++++|.+.|++..+.+ ..| +...|+.+...+...|++++|+..|++
T Consensus 279 ~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 279 GLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1111111 11110 111111111 123478999999999998764 223 456788888889999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 006630 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453 (638)
Q Consensus 374 m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 453 (638)
..+.... +...|..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|++..+.+ +.+.
T Consensus 357 al~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~ 433 (615)
T TIGR00990 357 SIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFI 433 (615)
T ss_pred HHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCH
Confidence 9885322 46678888888999999999999999998864 5567889999999999999999999999999876 5567
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH------H
Q 006630 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY------A 527 (638)
Q Consensus 454 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~ 527 (638)
..+..+...+.+.|++++|+..|++.+... +.+...+..+...+...|++++|++.|++.+......+.. .
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l 510 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNF---PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPL 510 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHH
Confidence 888889999999999999999999998865 3556788888999999999999999999998763221111 1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccccchhhhhhhh
Q 006630 528 WTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGER 606 (638)
Q Consensus 528 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~y~~~g~~ 606 (638)
++..+..+...|++++|..++++.+.. .|+ ...+..+...+...|++++|..++++++++.+.... ......+
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e----~~~a~~~ 584 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE----LVQAISY 584 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH----HHHHHHH
Confidence 122222334469999999999998865 454 456888999999999999999999999999876544 3344466
Q ss_pred hhHHHHHhhhhhhhhhhhhhhc
Q 006630 607 DLKEKAKKQVDGRKRRARQRRW 628 (638)
Q Consensus 607 ~~A~~~~~~~~~~~~~~~~~~~ 628 (638)
.+|.++...+.++.+.--.|=+
T Consensus 585 ~~a~~~~~~~~~~~~~~~~~~~ 606 (615)
T TIGR00990 585 AEATRTQIQVQEDYPVLASKLQ 606 (615)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH
Confidence 6777776666666654444433
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=4.3e-19 Score=196.01 Aligned_cols=490 Identities=12% Similarity=0.047 Sum_probs=311.5
Q ss_pred hHHHHHHHHhccCchhHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHH-
Q 006630 105 GLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRR- 183 (638)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~- 183 (638)
.+...+...+...|+...+...........+.|...+..+..+ +++++|..+++++....|. +..++..+...
T Consensus 79 ~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~--n~~~~~~la~~~ 152 (987)
T PRK09782 79 PLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKA--CDAVPTLRCRSE 152 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCC--ChhHHHHHHHHh
Confidence 3444555666777777666655444333445556665555322 8888999999999988876 44455444444
Q ss_pred -------HHhcCCHHHHHHHHHhchhCCCCCCHHHHHHH-HHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Q 006630 184 -------FASARMVKKAIEVLDEMPKYGCEPDEFVFGCL-LDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCK 255 (638)
Q Consensus 184 -------~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~ 255 (638)
|.+.+...+++ + .......|+..+.... ...|.+.|++++|+.++.++.+..+.+...+..|...|.+
T Consensus 153 ~~~~~l~y~q~eqAl~AL---~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q 228 (987)
T PRK09782 153 VGQNALRLAQLPVARAQL---N-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLA 228 (987)
T ss_pred hccchhhhhhHHHHHHHH---H-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 55554444444 3 2222223445544444 8888888888888888888887767777777777777777
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC-CCHHhH-----------------
Q 006630 256 -EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD-PNANSY----------------- 316 (638)
Q Consensus 256 -~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~----------------- 316 (638)
.++ +++..+++. .++-+...+..+...|.+.|+.++|.++++++...-.. |+..++
T Consensus 229 ~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~ 303 (987)
T PRK09782 229 GQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALAN 303 (987)
T ss_pred hhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccc
Confidence 366 667666543 22356777778888888888888888877776533111 221111
Q ss_pred -------------HHHHHHHHhc---------------------------------------------------------
Q 006630 317 -------------TVLIQALCRM--------------------------------------------------------- 326 (638)
Q Consensus 317 -------------~~li~~~~~~--------------------------------------------------------- 326 (638)
-.++..+.+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~ 383 (987)
T PRK09782 304 YTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLT 383 (987)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 0112233333
Q ss_pred ------CCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCC---HHHHHHH----------------------HHH
Q 006630 327 ------EKMEEANRAFVEMERS--GCEADVVTYTTLISGFCKSRK---IDRCYEI----------------------LDS 373 (638)
Q Consensus 327 ------g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~---~~~A~~~----------------------~~~ 373 (638)
|+.++|.++|...... ...++....+-++..|.+.+. ..++..+ .+.
T Consensus 384 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (987)
T PRK09782 384 WQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPA 463 (987)
T ss_pred HHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHH
Confidence 3344444444443321 011122233344444444433 2222222 111
Q ss_pred HHHC-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 006630 374 MIQR-GI-LP--NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASL 449 (638)
Q Consensus 374 m~~~-~~-~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 449 (638)
.... +. ++ +...+..+..++.. ++.++|...+...... .|+......+...+...|++++|...|+++...
T Consensus 464 ~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~-- 538 (987)
T PRK09782 464 IVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH-- 538 (987)
T ss_pred HHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--
Confidence 1110 11 12 34455555555544 6777788877666654 355444334444556889999999999887654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006630 450 SPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529 (638)
Q Consensus 450 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 529 (638)
+|+...+..+...+.+.|++++|..+|++.+... ++....+..+...+...|++++|...++++++. .|+...|.
T Consensus 539 ~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~---P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~ 613 (987)
T PRK09782 539 DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG---LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYV 613 (987)
T ss_pred CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHH
Confidence 4555566777778888899999999998888765 234444444444555669999999999998875 56778888
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhh
Q 006630 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRG 604 (638)
Q Consensus 530 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g 604 (638)
.+..++.+.|++++|+..+++.++. .|+ ...+..+..++...|++++|+..++++++.+|+++.++ .+|...|
T Consensus 614 ~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 614 ARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLD 691 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 8888999999999999999988865 554 55677777788888999999999999999999988775 5788899
Q ss_pred hhhhHHHHHhhhhhhhh
Q 006630 605 ERDLKEKAKKQVDGRKR 621 (638)
Q Consensus 605 ~~~~A~~~~~~~~~~~~ 621 (638)
++++|++.+++..+..+
T Consensus 692 d~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 692 DMAATQHYARLVIDDID 708 (987)
T ss_pred CHHHHHHHHHHHHhcCC
Confidence 99999998888654443
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=8.2e-21 Score=195.72 Aligned_cols=292 Identities=12% Similarity=0.138 Sum_probs=122.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC---HHhHHHHHHHHHhcCCHHH
Q 006630 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN---ANSYTVLIQALCRMEKMEE 331 (638)
Q Consensus 255 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~ 331 (638)
..|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ..++..++..|.+.|++++
T Consensus 47 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred hcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3444444444444444432 12233444444444444444444444444443221111 1234445555555555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHH
Q 006630 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ----LTYLHIMLAHEKKEELEECVELMG 407 (638)
Q Consensus 332 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~ 407 (638)
|..+|+++.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+...|++++|...++
T Consensus 126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 555555555431 234445555555555555555555555555543322111 112223333333444444444444
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006630 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487 (638)
Q Consensus 408 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 487 (638)
++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+.......++.++.+|...|++++|...++++.+..
T Consensus 205 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~---- 279 (389)
T PRK11788 205 KALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY---- 279 (389)
T ss_pred HHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 443321 122233333444444444444444444444433211112233444444444444444444444444432
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHhCC
Q 006630 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS---NGHVKEACSYCLDMMDAD 555 (638)
Q Consensus 488 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~ 555 (638)
|+...+..+...+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.++++.++++|.+.+
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 22223334444444444444444444444432 3444444444433332 234444444444444433
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=2.6e-18 Score=186.63 Aligned_cols=425 Identities=12% Similarity=0.007 Sum_probs=302.7
Q ss_pred HhccCchhHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006630 113 RCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKK 192 (638)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~ 192 (638)
.+...|+...+...+.... ...|+...|..+..+|.+.|++++|+..++.....+|. +...+..+..++...|++++
T Consensus 136 ~~~~~~~~~~Ai~~y~~al-~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~--~~~a~~~~a~a~~~lg~~~e 212 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAI-ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD--YSKALNRRANAYDGLGKYAD 212 (615)
T ss_pred HHHHcCCHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCCHHH
Confidence 4445566666666655433 23567888999999999999999999999999998765 67789999999999999999
Q ss_pred HHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272 (638)
Q Consensus 193 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (638)
|+..|..+...+-..+.. ...++.-+.. ..+...........+++...+..+...+ ..........-+.+..+.
T Consensus 213 A~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 213 ALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYL-QSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred HHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHH-HHccCCcchhhhhccccc
Confidence 999888766543122222 2222222222 2233333333333344444444443322 222222222222221111
Q ss_pred CCCCCH-HHHHHHHHH---HHHcCCHhHHHHHHHHHHHcC-CCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006630 273 GFEPDI-VVYNNLLSG---YAQMGKMTDAFELLKEMRRKG-CDP-NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346 (638)
Q Consensus 273 g~~p~~-~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~g-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 346 (638)
.+.. ..+..+... ....+++++|.+.|+...+.+ ..| +...+..+...+...|++++|+..|++..+. .|
T Consensus 287 --~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P 362 (615)
T TIGR00990 287 --DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DP 362 (615)
T ss_pred --ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC
Confidence 1111 111111111 123468999999999998765 223 4567888888999999999999999999876 44
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006630 347 D-VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425 (638)
Q Consensus 347 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 425 (638)
+ ...|..+...+...|++++|+..|++..+.... +...+..+...+...|++++|...|++..+.. +.+...+..+.
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la 440 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLG 440 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHH
Confidence 4 668888899999999999999999999886433 67888889999999999999999999999875 55677788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcH---H-HHHHHHHHHH
Q 006630 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY---G-TLKALLNSLL 501 (638)
Q Consensus 426 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~---~-~~~~ll~~~~ 501 (638)
..+.+.|++++|+..|++..+.. +.+...|+.+...+...|++++|++.|++.+.......+.. . .+...+..+.
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH
Confidence 99999999999999999998764 55678999999999999999999999999988652111111 1 1112222233
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006630 502 RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554 (638)
Q Consensus 502 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 554 (638)
..|++++|.+++++++.... .+...+..++..+.+.|++++|+.+|++..+.
T Consensus 520 ~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 520 WKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 46999999999999987642 24557889999999999999999999998764
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=2.2e-20 Score=192.49 Aligned_cols=306 Identities=16% Similarity=0.097 Sum_probs=183.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCC---HHHHHHHHHHHHhC
Q 006630 146 KSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPD---EFVFGCLLDALCKN 222 (638)
Q Consensus 146 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~ 222 (638)
..+...|++++|+..|+++...+|. +..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPE--TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 3445667777777777777766553 455666666667777777777777776665421111 23455666666666
Q ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 006630 223 SSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302 (638)
Q Consensus 223 g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 302 (638)
|++++|..+|+++.+..+.+..+++.++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------- 178 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------- 178 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------
Confidence 6666666666666554445555666666666666666666666666655432111100
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006630 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382 (638)
Q Consensus 303 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 382 (638)
....+..+...+.+.|++++|...|+++.+.. +.+...+..+...|.+.|++++|+++|+++.+.+....
T Consensus 179 ---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 248 (389)
T PRK11788 179 ---------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL 248 (389)
T ss_pred ---------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH
Confidence 01123344455555566666666666555432 22344555555666666666666666666655432222
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006630 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462 (638)
Q Consensus 383 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 462 (638)
..++..++.++...|++++|...++.+.+. .|+...+..++..+.+.|++++|..+|+++.+. .|+...++.++..
T Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~ 324 (389)
T PRK11788 249 SEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDY 324 (389)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHH
Confidence 344556666666667777777776666654 344455567777777788888888888777765 4777777777766
Q ss_pred HHh---cCCHHHHHHHHHHHHhCCCCCCCc
Q 006630 463 FLG---QGCLIEACEYFKEMVGRGLLSAPQ 489 (638)
Q Consensus 463 ~~~---~g~~~~A~~~~~~m~~~~~~~~p~ 489 (638)
+.. .|+..+++.++++|.+.++.+.|+
T Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 325 HLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 654 457778888888887766644455
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=2.7e-19 Score=193.51 Aligned_cols=334 Identities=9% Similarity=0.036 Sum_probs=167.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 006630 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328 (638)
Q Consensus 249 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 328 (638)
.+..+.+.|++++|..+++....... -+...+..++.++...|++++|.+.++++.+... .+...+..+...+...|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCC
Confidence 34444455555555555555554431 1222333333444445555555555555554421 133444555555555555
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006630 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408 (638)
Q Consensus 329 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 408 (638)
+++|...|+++.... +.+...+..+...+...|++++|...++.+......+ ...+..+ ..+...|++++|...++.
T Consensus 126 ~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 126 YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 555555555555431 2234445555555555555555555555554432221 1122112 224455555555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCC
Q 006630 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE----ACEYFKEMVGRGL 484 (638)
Q Consensus 409 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~ 484 (638)
+.+....++...+..+...+.+.|++++|+..|+++.+.+ +.+...+..+...+...|++++ |+..|+++....
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~- 280 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN- 280 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-
Confidence 5443222223333333445555666666666666655543 3344555555566666666553 556666665544
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH-H
Q 006630 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT-F 563 (638)
Q Consensus 485 ~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~ 563 (638)
+.+..++..+...+...|++++|...++++...... +...+..+..+|.+.|++++|+..|+++.+. .|+... +
T Consensus 281 --P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~ 355 (656)
T PRK15174 281 --SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWN 355 (656)
T ss_pred --CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHH
Confidence 234445555555666666666666666666554211 3344555556666666666666666665543 343322 2
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhcc
Q 006630 564 AKLMRGLKKLYNRQIAAEITEKVRKMAAERQ 594 (638)
Q Consensus 564 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 594 (638)
..+..++...|+.++|...++++++..|++.
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 2234455556666666666666666666543
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=2.8e-19 Score=197.52 Aligned_cols=412 Identities=12% Similarity=0.020 Sum_probs=268.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 006630 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYG 252 (638)
Q Consensus 173 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~ 252 (638)
++....-.+......|+.++|++++....... +.+...+..+..++.+.|++++|..+|++.....|.+...+..++..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~ 92 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILT 92 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44444445555566666666666666655421 34445566666666666666666666666665555566666666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHH
Q 006630 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332 (638)
Q Consensus 253 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 332 (638)
+...|++++|...+++..+.. +.+.. +..+..++...|+.++|...++++.+.... +...+..+...+...|..+.|
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHH
Confidence 666666666666666666552 33344 656666666666666666666666665322 444445555666666666666
Q ss_pred HHHHHHHHHcCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHHH
Q 006630 333 NRAFVEMERSGCEADV------VTYTTLISGFC-----KSRKI---DRCYEILDSMIQR-GILPNQL-TY----LHIMLA 392 (638)
Q Consensus 333 ~~~~~~m~~~g~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-~~~p~~~-t~----~~ll~~ 392 (638)
+..++.... .|+. .....++..+. ..+++ ++|++.++.+.+. ...|+.. .+ ...+.+
T Consensus 170 l~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 170 LGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 666655442 1211 01111222221 12233 6788888888754 2222221 11 111334
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcC
Q 006630 393 HEKKEELEECVELMGEMRKIGCV-PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG----TDSFVVMVHGFLGQG 467 (638)
Q Consensus 393 ~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g 467 (638)
+...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|+..|+++.+.+ +.+ ...+..+..++...|
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~-p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP-ETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC-CCCCCCChHHHHHHHHHHHhcc
Confidence 55668888999999888876522 222 22224667888999999999999887643 111 345666677788899
Q ss_pred CHHHHHHHHHHHHhCCC---------CCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006630 468 CLIEACEYFKEMVGRGL---------LSAPQY---GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535 (638)
Q Consensus 468 ~~~~A~~~~~~m~~~~~---------~~~p~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 535 (638)
++++|+.+++.+..... ...|+. ..+..+...+...|++++|+++++++.... +-+...+..++..+
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~ 403 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVL 403 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 99999999998887631 012332 244566778889999999999999998863 33577889999999
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 536 FSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 536 ~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
...|++++|++.+++.++. .|+ ...+......+...|++++|+..++++++..|+++.+
T Consensus 404 ~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 404 QARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999999999998865 576 4556677778888999999999999999999999976
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=3.3e-19 Score=192.77 Aligned_cols=332 Identities=10% Similarity=0.024 Sum_probs=208.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc
Q 006630 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKE 256 (638)
Q Consensus 177 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 256 (638)
...++..+.+.|++++|+.+++...... +-+...+..++.+....|++++|...|+++....|.+...|..+...+...
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 3445666677788888888887776653 333455555666666778888888888887777777777777777888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 006630 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336 (638)
Q Consensus 257 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 336 (638)
|++++|...++++.+.. +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 88888888888877653 334566677777777777777777777766654322 22233222 2366677777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHC
Q 006630 337 VEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE----CVELMGEMRKI 412 (638)
Q Consensus 337 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~----a~~~~~~~~~~ 412 (638)
+.+.+....++...+..+...+...|++++|+..++++.+.... +...+..+...+...|++++ |...++...+.
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 77665432233344444556666777777777777777665322 45555556666666666664 56666666554
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcH-H
Q 006630 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY-G 491 (638)
Q Consensus 413 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~-~ 491 (638)
. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+...+.+.|++++|+..|+++.... |+. .
T Consensus 280 ~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~----P~~~~ 353 (656)
T PRK15174 280 N-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK----GVTSK 353 (656)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----ccchH
Confidence 3 3345566666666666666666666666666553 3344555556666666666666666666666553 222 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006630 492 TLKALLNSLLRAQKVEMAKDVWSCIVTK 519 (638)
Q Consensus 492 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 519 (638)
.+..+..++...|+.++|...|+++.+.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2223344556666666666666666554
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=2.7e-18 Score=189.78 Aligned_cols=479 Identities=10% Similarity=0.015 Sum_probs=330.3
Q ss_pred CchhHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006630 117 AGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196 (638)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 196 (638)
.|+...++..+.....-.+.+..++..|...|.+.|++++|+..+++..+.+|. +...+..+ . ..++.++|..+
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~--n~~~~~~L-a---~i~~~~kA~~~ 130 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPG--DARLERSL-A---AIPVEVKSVTT 130 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc--cHHHHHHH-H---HhccChhHHHH
Confidence 366655555544333333556889999999999999999999999999998763 54444443 2 22899999999
Q ss_pred HHhchhCCCCCCHHHHHHHHHH--------HHhCCCHHHHHHHHHHHhcc-CCCCHHHHH-HHHHHHHhcCCHHHHHHHH
Q 006630 197 LDEMPKYGCEPDEFVFGCLLDA--------LCKNSSVKEAAKLFDEMRER-FKPSLRHFT-SLLYGWCKEGKLVEAKYVL 266 (638)
Q Consensus 197 ~~~m~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~-~li~~~~~~g~~~~A~~~~ 266 (638)
++++.+.. +-+..++..+... |.+.+ +|.+.++ .... ..|+..+.. .+...|.+.|++++|++++
T Consensus 131 ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~e---qAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 131 VEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLP---VARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHH---HHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 99998874 3445666666665 66664 4444444 2211 222344444 4499999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHH-cCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006630 267 VQMKDAGFEPDIVVYNNLLSGYAQ-MGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345 (638)
Q Consensus 267 ~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 345 (638)
.++.+.+ +.+..-...|..+|.. .++ +.+..+++. .+.-+...+..+++.|.+.|+.++|.+++.++...-..
T Consensus 206 ~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~ 279 (987)
T PRK09782 206 NEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTT 279 (987)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccC
Confidence 9999987 4456667777778887 466 777777553 23358889999999999999999999998876533111
Q ss_pred -CCHHHHHH------------------------------HHHH-------------------------------------
Q 006630 346 -ADVVTYTT------------------------------LISG------------------------------------- 357 (638)
Q Consensus 346 -~~~~~~~~------------------------------li~~------------------------------------- 357 (638)
|+..+|-- ++..
T Consensus 280 ~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 359 (987)
T PRK09782 280 DAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKA 359 (987)
T ss_pred CCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchh
Confidence 11111100 0111
Q ss_pred --------------------------HHhcCCHHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhcCC---HHHHHHH-
Q 006630 358 --------------------------FCKSRKIDRCYEILDSMIQR-G-ILPNQLTYLHIMLAHEKKEE---LEECVEL- 405 (638)
Q Consensus 358 --------------------------~~~~g~~~~A~~~~~~m~~~-~-~~p~~~t~~~ll~~~~~~g~---~~~a~~~- 405 (638)
..+.|+.++|..+|+..... + -.++......++..+.+.+. ..++..+
T Consensus 360 ~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 439 (987)
T PRK09782 360 EALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILS 439 (987)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhc
Confidence 12334555555555555441 1 12233333355666655544 2222222
Q ss_pred ---------------------HHHHHHC-CC-CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006630 406 ---------------------MGEMRKI-GC-VP--DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460 (638)
Q Consensus 406 ---------------------~~~~~~~-~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 460 (638)
+...... +. ++ +...|..+..++.. ++.++|...|.+..... |+......+.
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA 516 (987)
T PRK09782 440 KPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVA 516 (987)
T ss_pred cccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHH
Confidence 1111111 11 33 56677777777766 78889999888887653 6654444445
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006630 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540 (638)
Q Consensus 461 ~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 540 (638)
..+...|++++|+..|+++.... |....+..+..++.+.|+.++|...+++.++.. +++...+..+...+.+.|+
T Consensus 517 ~al~~~Gr~eeAi~~~rka~~~~----p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr 591 (987)
T PRK09782 517 YQAYQVEDYATALAAWQKISLHD----MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQ 591 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHhccC----CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCC
Confidence 55578999999999999986553 444556677788899999999999999998863 2233333344445556799
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhHHHHHhhh
Q 006630 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLKEKAKKQV 616 (638)
Q Consensus 541 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~~~~~~~ 616 (638)
+++|+..+++.++. .|+...|..+..++.+.|++++|+..++++++++|+++.++ .++...|++++|.+++++.
T Consensus 592 ~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A 669 (987)
T PRK09782 592 PELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERA 669 (987)
T ss_pred HHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999865 67888899999999999999999999999999999999876 4788899999999999987
Q ss_pred hhhhhh
Q 006630 617 DGRKRR 622 (638)
Q Consensus 617 ~~~~~~ 622 (638)
.+..+.
T Consensus 670 L~l~P~ 675 (987)
T PRK09782 670 HKGLPD 675 (987)
T ss_pred HHhCCC
Confidence 665543
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.89 E-value=6.5e-18 Score=182.95 Aligned_cols=445 Identities=11% Similarity=0.010 Sum_probs=336.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhC
Q 006630 143 ALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN 222 (638)
Q Consensus 143 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 222 (638)
.-+-...+.|+++.|+..|++..+.+|. +.....-++..+...|+.++|+..+++.... -+........+...|...
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~--~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAGPL--QSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCcc--chhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHc
Confidence 3444667999999999999999998876 3222226788888899999999999998821 123344444556788899
Q ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 006630 223 SSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302 (638)
Q Consensus 223 g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 302 (638)
|++++|+++|+++.+..|.+...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|++.++
T Consensus 116 gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 99999999999999998989999999999999999999999999999876 5666666555555555667767999999
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH------HHHHHHH-H----hcC---CHHHHH
Q 006630 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY------TTLISGF-C----KSR---KIDRCY 368 (638)
Q Consensus 303 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~------~~li~~~-~----~~g---~~~~A~ 368 (638)
++.+.. +.+...+..+.....+.|-...|.++..+-...- .+....+ ..+++.- . ... -.+.|+
T Consensus 194 kll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 194 EAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 999884 3367788888999999999999988776533210 1111111 1111110 0 111 234566
Q ss_pred HHHHHHHHC-CCCCCH-H----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006630 369 EILDSMIQR-GILPNQ-L----TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442 (638)
Q Consensus 369 ~~~~~m~~~-~~~p~~-~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 442 (638)
.-++.+... +..|.. . ...-.+-++...+++.++++.++.+...+.+....+-..+.++|...+++++|+.+|.
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 666666653 222322 2 2223456788899999999999999988866566788899999999999999999999
Q ss_pred HHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCCCcHHHH-HHHHHHHHHcCC
Q 006630 443 EMEAAS-----LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-----------LSAPQYGTL-KALLNSLLRAQK 505 (638)
Q Consensus 443 ~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~~~p~~~~~-~~ll~~~~~~g~ 505 (638)
.+.... .+++......|.-+|...+++++|..+++++.+... .+.|+...+ ..++..+...|+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd 431 (822)
T PRK14574 352 SLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND 431 (822)
T ss_pred HHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC
Confidence 986542 133444567899999999999999999999987422 123444433 345667889999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhcCHHHHHHHHH
Q 006630 506 VEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLYNRQIAAEITE 584 (638)
Q Consensus 506 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~ 584 (638)
+.+|++.++.+.... +-|...+..+.+.+...|++.+|.+.++.+... .|+ ..+....+.++...+++++|+.+.+
T Consensus 432 l~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~ 508 (822)
T PRK14574 432 LPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTD 508 (822)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 999999999998764 338888999999999999999999999776644 665 4567788888889999999999999
Q ss_pred HHHHHHHhccccc
Q 006630 585 KVRKMAAERQITF 597 (638)
Q Consensus 585 ~~~~~~p~~~~~~ 597 (638)
++++..|+++..-
T Consensus 509 ~l~~~~Pe~~~~~ 521 (822)
T PRK14574 509 DVISRSPEDIPSQ 521 (822)
T ss_pred HHHhhCCCchhHH
Confidence 9999999999663
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.6e-18 Score=179.17 Aligned_cols=478 Identities=15% Similarity=0.133 Sum_probs=371.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCH--H
Q 006630 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQ-LITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDE--F 210 (638)
Q Consensus 134 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~--~ 210 (638)
...++++.+.|.+.|.-.|+++.++.+...+...... ..-...|-.+.++|-..|++++|...|.+..+. .+|. .
T Consensus 266 n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l 343 (1018)
T KOG2002|consen 266 NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVL 343 (1018)
T ss_pred cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccc
Confidence 4678889999999999999999999999888764311 123456788999999999999999999887765 3444 4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006630 211 VFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG----KLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286 (638)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 286 (638)
.+.-|..+|.+.|+++.+...|+.+.+..|.+..+...|...|...+ ..+.|..++.+..+.- +.|...|..+..
T Consensus 344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laq 422 (1018)
T KOG2002|consen 344 PLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQ 422 (1018)
T ss_pred cccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHH
Confidence 55678899999999999999999999988999999999999998886 5677777777777654 557778887777
Q ss_pred HHHHcCCHhHHHHHHHHH----HHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCH------HHHHH
Q 006630 287 GYAQMGKMTDAFELLKEM----RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS---GCEADV------VTYTT 353 (638)
Q Consensus 287 ~~~~~g~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~~~~------~~~~~ 353 (638)
.+.... ...++..+... ...+..+.....|.+...+...|+++.|...|...... ...+|. .+-..
T Consensus 423 l~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 423 LLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 775544 43346666544 34555677889999999999999999999999987654 122333 22233
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 006630 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQ-LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432 (638)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 432 (638)
+...+-..++.+.|.+.|..+.+.. |+- ..|..++......+...+|...+..+.+.+ ..++..++.+...|.+..
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~ 578 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKS 578 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhh
Confidence 4555667789999999999998863 333 344444433344577889999999888764 566777777788999999
Q ss_pred CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHH
Q 006630 433 ELKEAVNVWNEMEAAS-LSPGTDSFVVMVHGFLG------------QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499 (638)
Q Consensus 433 ~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~ 499 (638)
.+..|.+-|+.+.+.- ..+|..+...|.+.|.+ .+..++|+++|.+.++.. +-+...-+.+.-.
T Consensus 579 ~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d---pkN~yAANGIgiV 655 (1018)
T KOG2002|consen 579 EWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND---PKNMYAANGIGIV 655 (1018)
T ss_pred hhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC---cchhhhccchhhh
Confidence 9999999887776542 23566566666665542 345788999999999887 4677777888888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhcCHHH
Q 006630 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA-DVMPQPDTFAKLMRGLKKLYNRQI 578 (638)
Q Consensus 500 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~t~~~ll~~~~~~g~~~~ 578 (638)
++..|++.+|..+|.++.+... -+..+|-.+.++|...|++..|++.|+...+. .-..+..+...|..++...|.+.+
T Consensus 656 LA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~e 734 (1018)
T KOG2002|consen 656 LAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQE 734 (1018)
T ss_pred hhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHH
Confidence 9999999999999999988732 25678999999999999999999999987763 335577889999999999999999
Q ss_pred HHHHHHHHHHHHHhccccc-----------------------chhhhhhhhhhHHHHHhhhhhhhhh
Q 006630 579 AAEITEKVRKMAAERQITF-----------------------KMYKRRGERDLKEKAKKQVDGRKRR 622 (638)
Q Consensus 579 A~~~~~~~~~~~p~~~~~~-----------------------~~y~~~g~~~~A~~~~~~~~~~~~~ 622 (638)
|.+.+.++....|.++.+. .+....++.++|.++|+.+.....+
T Consensus 735 ak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 735 AKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999862 2456668888899999887766655
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=1.9e-17 Score=183.11 Aligned_cols=417 Identities=10% Similarity=-0.010 Sum_probs=211.6
Q ss_pred CCChhHHHHHHHHhccCchhHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHH
Q 006630 101 VLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVIL 180 (638)
Q Consensus 101 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~l 180 (638)
++++..+...+....-.|+...+...|....+..+.+...+..+...+.+.|++++|..+|++.....|. +...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ--NDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHH
Confidence 3556666666666555666655555565544323445555666666777777777777777776666554 44455566
Q ss_pred HHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH
Q 006630 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLV 260 (638)
Q Consensus 181 i~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 260 (638)
...+...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+..|.+...+..+...+...|..+
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Confidence 666666777777777777666552 33444 6666666666677777777777766666666666666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH---HH
Q 006630 261 EAKYVLVQMKDAGFEPDI------VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKM---EE 331 (638)
Q Consensus 261 ~A~~~~~~m~~~g~~p~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~ 331 (638)
+|++.++.... .|+. .....++......+ ....+++ ++
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~------------------------------~~~~~r~~~ad~ 214 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPT------------------------------RSEKERYAIADR 214 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccc------------------------------cChhHHHHHHHH
Confidence 66666655442 2221 00111111111000 0111112 34
Q ss_pred HHHHHHHHHHc-CCCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHH
Q 006630 332 ANRAFVEMERS-GCEADVV-TY----TTLISGFCKSRKIDRCYEILDSMIQRGIL-PNQLTYLHIMLAHEKKEELEECVE 404 (638)
Q Consensus 332 A~~~~~~m~~~-g~~~~~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~g~~~~a~~ 404 (638)
|++.++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.. |+. ....+..++...|++++|..
T Consensus 215 Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~ 293 (765)
T PRK10049 215 ALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQS 293 (765)
T ss_pred HHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHH
Confidence 44444444422 0111110 00 00012223445555555555555444321 221 11112344455555555555
Q ss_pred HHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----------CCCC---HHHHHHHHHHHHhcC
Q 006630 405 LMGEMRKIGCVP---DVSNYNVVIRLACKLGELKEAVNVWNEMEAAS-----------LSPG---TDSFVVMVHGFLGQG 467 (638)
Q Consensus 405 ~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~p~---~~~~~~li~~~~~~g 467 (638)
+++.+.+..... .......+..++...|++++|..+++.+.+.. -.|+ ...+..+...+...|
T Consensus 294 ~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g 373 (765)
T PRK10049 294 ILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN 373 (765)
T ss_pred HHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC
Confidence 555544321000 01223333444455555555555555554431 0122 123444555566666
Q ss_pred CHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHH
Q 006630 468 CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN-VYAWTIWIHSLFSNGHVKEACS 546 (638)
Q Consensus 468 ~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 546 (638)
+.++|+++++++.... +.+...+..+...+...|++++|++.+++++.. .|+ ...+...+..+...|++++|..
T Consensus 374 ~~~eA~~~l~~al~~~---P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~ 448 (765)
T PRK10049 374 DLPQAEMRARELAYNA---PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDV 448 (765)
T ss_pred CHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 6666666666666554 234455555566666666666666666666654 233 3444455555666666666666
Q ss_pred HHHHHHhCCCCCCHHH
Q 006630 547 YCLDMMDADVMPQPDT 562 (638)
Q Consensus 547 ~~~~m~~~~~~p~~~t 562 (638)
+++++++. .|+...
T Consensus 449 ~~~~ll~~--~Pd~~~ 462 (765)
T PRK10049 449 LTDDVVAR--EPQDPG 462 (765)
T ss_pred HHHHHHHh--CCCCHH
Confidence 66666643 444433
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.8e-16 Score=164.25 Aligned_cols=456 Identities=14% Similarity=0.090 Sum_probs=295.5
Q ss_pred hhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCC--CCHHHHHHHHHHHHhCCCHHHHHHH
Q 006630 154 FGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCE--PDEFVFGCLLDALCKNSSVKEAAKL 231 (638)
Q Consensus 154 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~ 231 (638)
+..+..++...-..++. ++...+.|...|.-.|++..+..+...+...... .-...|.-+..+|-..|++++|...
T Consensus 252 ~~~~~~ll~~ay~~n~~--nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKENNE--NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHhhcCC--CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 44555555555555443 4555666666666667777777766666544211 1123456666777777777777777
Q ss_pred HHHHhccCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----CHhHHHHHHHHHHH
Q 006630 232 FDEMRERFKPS-LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG----KMTDAFELLKEMRR 306 (638)
Q Consensus 232 ~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~ 306 (638)
|.+.....+.+ +..+-.|...|.+.|+++++...|+...+.. +-+..|...|...|+..+ ..+.|..++.+..+
T Consensus 330 Y~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~ 408 (1018)
T KOG2002|consen 330 YMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE 408 (1018)
T ss_pred HHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh
Confidence 76665543444 4555566777777777777777777776653 334455556666665554 34556666666555
Q ss_pred cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC
Q 006630 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEME----RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR---GI 379 (638)
Q Consensus 307 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~ 379 (638)
.- +.|...|-.+..+|.... ...++.+|.... ..+-.+-+...|.+...+...|++.+|...|...... ..
T Consensus 409 ~~-~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~ 486 (1018)
T KOG2002|consen 409 QT-PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVA 486 (1018)
T ss_pred cc-cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhc
Confidence 42 335666666666555433 333355554432 3344566677777777778888888888888777654 12
Q ss_pred CCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 006630 380 LPNQ------LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453 (638)
Q Consensus 380 ~p~~------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 453 (638)
.+|. .+-..+....-..++.+.|.+.|..+.+.. +.-+..|-.+..+....+...+|...++.....+ ..++
T Consensus 487 n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np 564 (1018)
T KOG2002|consen 487 NKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNP 564 (1018)
T ss_pred CccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCc
Confidence 2222 223344555566677888888888877652 2223333333333334467778888888877765 5666
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHH------------HcCCHHHHHHHHHHHHHcCC
Q 006630 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL------------RAQKVEMAKDVWSCIVTKGC 521 (638)
Q Consensus 454 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~------------~~g~~~~A~~~~~~~~~~~~ 521 (638)
..+..+...+.....+..|.+-|......... .+|..+..+|.+.|. ..+..+.|.++|.++++..
T Consensus 565 ~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~-~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d- 642 (1018)
T KOG2002|consen 565 NARSLLGNLHLKKSEWKPAKKKFETILKKTST-KTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND- 642 (1018)
T ss_pred HHHHHHHHHHHhhhhhcccccHHHHHHhhhcc-CCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-
Confidence 77777777888877788888777666654332 367777777777665 2345778899999888764
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH-hc-cccc--
Q 006630 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAA-ER-QITF-- 597 (638)
Q Consensus 522 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p-~~-~~~~-- 597 (638)
+.|...-|-+.-+++..|++.+|..+|.+..+.. .-+..+|.++...|...|++-.|+++|+..++..- ++ +..+
T Consensus 643 pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~ 721 (1018)
T KOG2002|consen 643 PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHY 721 (1018)
T ss_pred cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 3367777888888999999999999999987753 33556789999999999999999999999987654 32 2232
Q ss_pred --chhhhhhhhhhHHHHHhhhhhh
Q 006630 598 --KMYKRRGERDLKEKAKKQVDGR 619 (638)
Q Consensus 598 --~~y~~~g~~~~A~~~~~~~~~~ 619 (638)
.++...|+|.+|.+...+....
T Consensus 722 Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 722 LARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHh
Confidence 6788889999998876654433
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=6.2e-16 Score=167.70 Aligned_cols=428 Identities=13% Similarity=0.052 Sum_probs=315.7
Q ss_pred HHHhcCCHHHHHHHHHhchhCCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH
Q 006630 183 RFASARMVKKAIEVLDEMPKYGCEPDE--FVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLV 260 (638)
Q Consensus 183 ~~~~~~~~~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 260 (638)
...+.|+++.|+..|++..+. .|+. .++ .++..+...|+.++|+..+++.....+........+...|...|+++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 346899999999999999876 4553 344 88888889999999999999988433344444555577899999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340 (638)
Q Consensus 261 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 340 (638)
+|+++|+++.+.. +-+...+..++..+...++.++|++.++.+.+. .|+...+..++..+...++..+|++.++++.
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 9999999999885 445677778889999999999999999999876 5566666555555555677767999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH------HHHHH-HH----HhcCC---HHHHHHHH
Q 006630 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY------LHIML-AH----EKKEE---LEECVELM 406 (638)
Q Consensus 341 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~------~~ll~-~~----~~~g~---~~~a~~~~ 406 (638)
+.. +-+...+..+..++.+.|-...|.++..+-..- +.+...-. ...+. +. ..... .+.|+.-+
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 884 335777788889999999999998776653211 11111111 11111 00 01122 34455555
Q ss_pred HHHHHC-C-CCCCHHHH-H---HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 407 GEMRKI-G-CVPDVSNY-N---VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480 (638)
Q Consensus 407 ~~~~~~-~-~~~~~~~~-~---~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 480 (638)
+.+... + .++....| . -.+-++.+.|++.++++.|+.+...+.+.-..+-..+.++|...+++++|+.+|+++.
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 555442 1 13222222 2 2344678899999999999999987744233467788999999999999999999997
Q ss_pred hCCCC---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------CCC--H-HHHHHHHHHHHccCCHHH
Q 006630 481 GRGLL---SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC-----------ELN--V-YAWTIWIHSLFSNGHVKE 543 (638)
Q Consensus 481 ~~~~~---~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~--~-~~~~~li~~~~~~g~~~~ 543 (638)
..... .+++......|.-++...+++++|..+++.+.+... .|+ - ..+..++..+...|++.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 75311 123444457889999999999999999999987411 122 2 233456777889999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhHHHHHhhhhhh
Q 006630 544 ACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLKEKAKKQVDGR 619 (638)
Q Consensus 544 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~~~~~~~~~~ 619 (638)
|.+.++++.... +-|......+...+...|+...|++.++.+..++|++..+. ..+-..|+|++|.++.+++.+.
T Consensus 435 Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 435 AQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 999999998652 44778899999999999999999999999999999987763 6788889999999988775443
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=6.1e-17 Score=153.47 Aligned_cols=485 Identities=14% Similarity=0.098 Sum_probs=310.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHhchhCCCCCC------HHH
Q 006630 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVF-VILMRRFASARMVKKAIEVLDEMPKYGCEPD------EFV 211 (638)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~-~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~------~~~ 211 (638)
.+...|..-|..+....+|+..|+-+.+.. ..++...+ ..+...+.+.+.+.+|++.++-.+.. .|+ ..+
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknk-mf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~riki 278 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNK-MFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKI 278 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhccc-ccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHH
Confidence 344455666777777788888888776643 22444332 23455677788899999998876654 232 234
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--------HH
Q 006630 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY--------NN 283 (638)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--------~~ 283 (638)
.+.+.-.+.+.|++++|+..|+...+. .||..+--.|+-++.-.|+.++..+.|.+|+..-..||..-| ..
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~-~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEE-APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHh-CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 555556677889999999999987765 345544444444455578889999999999886556654422 12
Q ss_pred HHHHHHHc---------C--CHhHHHHHHHHHHHcCCCCCHHh-------------HHH--------HHHHHHhcCCHHH
Q 006630 284 LLSGYAQM---------G--KMTDAFELLKEMRRKGCDPNANS-------------YTV--------LIQALCRMEKMEE 331 (638)
Q Consensus 284 ll~~~~~~---------g--~~~~a~~~~~~~~~~g~~~~~~~-------------~~~--------li~~~~~~g~~~~ 331 (638)
|+.--.+. . +-+.++-.--+++.--+.|+-.. +.. -..-|.+.|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 22221111 1 11111111112221112222110 000 1224678889999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH-HHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006630 332 ANRAFVEMERSGCEADVVTYTTLISG-FCK-SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409 (638)
Q Consensus 332 A~~~~~~m~~~g~~~~~~~~~~li~~-~~~-~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 409 (638)
|.+++.-+.+..-+.-...-+.|-.. |.+ -.++.+|-.+-+........ +....+.-.+.....|++++|.+.+++.
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 99888887754222112222222222 222 33566777666665543221 3333333333445679999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc
Q 006630 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489 (638)
Q Consensus 410 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~ 489 (638)
....-.-....||.=+ .+-..|++++|++.|-++... +..+......+...|....+..+|++++-+....- +.+
T Consensus 517 l~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sli---p~d 591 (840)
T KOG2003|consen 517 LNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLI---PND 591 (840)
T ss_pred HcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC---CCC
Confidence 8654222333333322 467789999999999877543 23456778888899999999999999987765432 567
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006630 490 YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569 (638)
Q Consensus 490 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 569 (638)
+..+..|...|-+.|+-..|.+.+-.--+. ++-+..+..-|..-|....-+++|+.+|++.. -+.|+..-|..++..
T Consensus 592 p~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmias 668 (840)
T KOG2003|consen 592 PAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIAS 668 (840)
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHH
Confidence 888899999999999999998887655444 45567777777788888889999999999875 358999999998887
Q ss_pred H-HhhcCHHHHHHHHHHHHHHHHhcccccc----hhh---------hhhhhhhHHHHHhhhhhhhhhhhhhhccCCccCc
Q 006630 570 L-KKLYNRQIAAEITEKVRKMAAERQITFK----MYK---------RRGERDLKEKAKKQVDGRKRRARQRRWGGGRSKA 635 (638)
Q Consensus 570 ~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~----~y~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (638)
| ++.|++++|.+.++.+-...|++-..+. +.. ...+.++++++.+--..+....++.+.+||+|+-
T Consensus 669 c~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d~key~~klek~eki~eir~qresd~~qgk~~s~~s~~ 748 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKDAKEYADKLEKAEKIKEIREQRESDIKQGKDGSAGSRG 748 (840)
T ss_pred HHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCC
Confidence 7 5679999999999999999999887642 221 2233444444443333333345566688888875
Q ss_pred c
Q 006630 636 K 636 (638)
Q Consensus 636 ~ 636 (638)
.
T Consensus 749 ~ 749 (840)
T KOG2003|consen 749 K 749 (840)
T ss_pred C
Confidence 4
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=2.9e-14 Score=134.82 Aligned_cols=453 Identities=16% Similarity=0.219 Sum_probs=310.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH--hcCCHH-HHHHHHHhchhCCCCCCHHHHH
Q 006630 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFA--SARMVK-KAIEVLDEMPKYGCEPDEFVFG 213 (638)
Q Consensus 137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~--~~~~~~-~A~~~~~~m~~~g~~~~~~~~~ 213 (638)
.+++-|.|+.+. ..|...++.-+|+.|...+. ..++..-..|++.-+ ...++- .-.+.|-.|.+.| +.+..+|
T Consensus 115 ~V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~-~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW- 190 (625)
T KOG4422|consen 115 QVETENNLLKMI-SSREVKDSCILYERMRSENV-DVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW- 190 (625)
T ss_pred hhcchhHHHHHH-hhcccchhHHHHHHHHhcCC-CCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc-
Confidence 445667777765 45788899999999998874 356666555554332 222222 2234555666655 3333333
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006630 214 CLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293 (638)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 293 (638)
+.|.+.+ -+|+.. |....++.+||.++|+--..+.|.+++++-.....+.+..+||.+|.+-.-
T Consensus 191 -------K~G~vAd--L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~--- 254 (625)
T KOG4422|consen 191 -------KSGAVAD--LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY--- 254 (625)
T ss_pred -------ccccHHH--HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh---
Confidence 4555543 334433 347889999999999999999999999999988789999999999886543
Q ss_pred HhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHH----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HH
Q 006630 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA----NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR-CY 368 (638)
Q Consensus 294 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~ 368 (638)
....+++.+|....+.||..|+|+++.+..+.|+++.| .+++.+|.+.|++|...+|..+|..+++.++..+ |.
T Consensus 255 -~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 255 -SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred -hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 33488999999999999999999999999999987764 5677889999999999999999999999888754 45
Q ss_pred HHHHHHHHC----CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHHcCC
Q 006630 369 EILDSMIQR----GILP----NQLTYLHIMLAHEKKEELEECVELMGEMRKIG----CVPD---VSNYNVVIRLACKLGE 433 (638)
Q Consensus 369 ~~~~~m~~~----~~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~ 433 (638)
.++.++... .++| |...|...+..|.+..+.+.|.++...+.... +.|+ ..-|..+....|+...
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 555555432 2222 55677888999999999999999887765421 2233 2335667778888899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcC-CH------
Q 006630 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQ-KV------ 506 (638)
Q Consensus 434 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g-~~------ 506 (638)
.+.-...|+.|.-.-.-|+..+...++.+..-.|+++-.-+++.+++..|. .-+......++.-+++.. ..
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh--t~r~~l~eeil~~L~~~k~hp~tp~r~ 491 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH--TFRSDLREEILMLLARDKLHPLTPERE 491 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHhcCCCCCCChHHH
Confidence 999999999998776678888888888888888988888888888887774 122222222333333222 00
Q ss_pred --HH-----HHHHH-------HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-C---CCCHHHHHHHHH
Q 006630 507 --EM-----AKDVW-------SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD-V---MPQPDTFAKLMR 568 (638)
Q Consensus 507 --~~-----A~~~~-------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~---~p~~~t~~~ll~ 568 (638)
.. |..++ .++.+ ........+...-.+.+.|..++|.+++.-+.+.+ - .|.-....-+++
T Consensus 492 Ql~~~~ak~aad~~e~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d 569 (625)
T KOG4422|consen 492 QLQVAFAKCAADIKEAYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMD 569 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHH
Confidence 00 11111 11222 23345566777788999999999999998886533 2 233333456677
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHhccccc--chhhhhhhhhhHHHHHh
Q 006630 569 GLKKLYNRQIAAEITEKVRKMAAERQITF--KMYKRRGERDLKEKAKK 614 (638)
Q Consensus 569 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~--~~y~~~g~~~~A~~~~~ 614 (638)
......+.-.|...++.+...+-..-+.+ .+...+.-.++-.++..
T Consensus 570 ~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~ls 617 (625)
T KOG4422|consen 570 SAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAINQEQKEALS 617 (625)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHHh
Confidence 77777899999999988866553322211 34444444444444433
No 29
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=6.2e-13 Score=127.50 Aligned_cols=495 Identities=11% Similarity=0.100 Sum_probs=368.4
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 006630 121 GYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200 (638)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 200 (638)
.-+...|.....+...+...|-..+.+=.++++...|..++++....-|. -...|-.-+-.--..|++..|.++|++-
T Consensus 90 ~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR--VdqlWyKY~ymEE~LgNi~gaRqiferW 167 (677)
T KOG1915|consen 90 QRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR--VDQLWYKYIYMEEMLGNIAGARQIFERW 167 (677)
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch--HHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 34455566554455667778888899999999999999999998876554 3345655565556789999999999998
Q ss_pred hhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-CCCCH
Q 006630 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA-G-FEPDI 278 (638)
Q Consensus 201 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~p~~ 278 (638)
.+. .|+...|++.|+.-.+-+.++.|..++++..-- .|++.+|--....-.++|+...|..+|....+. | -..+.
T Consensus 168 ~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~-HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e 244 (677)
T KOG1915|consen 168 MEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV-HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAE 244 (677)
T ss_pred HcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee-cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHH
Confidence 776 899999999999999999999999999998754 489999999999999999999999999988763 1 01122
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHhcCCHHHHHHH--------HHHHHHcCCCCCH
Q 006630 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN--ANSYTVLIQALCRMEKMEEANRA--------FVEMERSGCEADV 348 (638)
Q Consensus 279 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~--------~~~m~~~g~~~~~ 348 (638)
..+++....-.+...++.|.-+|+..++. ++.+ ...|..+...=-+-|+....... ++.+...+ +-|-
T Consensus 245 ~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nY 322 (677)
T KOG1915|consen 245 ILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNY 322 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCc
Confidence 33444444444567888899999888876 3323 44555555554555664443332 34444443 5577
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCH
Q 006630 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ-------LTYLHIMLAH---EKKEELEECVELMGEMRKIGCVPDV 418 (638)
Q Consensus 349 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~t~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~~~~ 418 (638)
.+|--.+..-...|+.+...++|++.+.. ++|-. ..|..+=-+| ....+.+.+.++++..++. ++...
T Consensus 323 DsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkk 400 (677)
T KOG1915|consen 323 DSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKK 400 (677)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCccc
Confidence 88888888888899999999999999985 44421 1222222222 3578899999999999884 45666
Q ss_pred HHHHHHHHHH----HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHH
Q 006630 419 SNYNVVIRLA----CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494 (638)
Q Consensus 419 ~~~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~ 494 (638)
.||.-+--+| .++.++..|.+++...+- ..|-..+|-..|..-.+.+.++....+|+..++.+ |.+..+|.
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~---Pe~c~~W~ 475 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS---PENCYAWS 475 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---hHhhHHHH
Confidence 6666554444 467899999999988774 46888899999999999999999999999999988 57788888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--
Q 006630 495 ALLNSLLRAQKVEMAKDVWSCIVTKG-CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK-- 571 (638)
Q Consensus 495 ~ll~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~-- 571 (638)
.....-...|+.+.|+.+|+.++... ..--...|.+.|+.-...|.++.|..+|+++++. .+...+|.++..--.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~ 553 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASA 553 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccc
Confidence 88888888999999999999998762 2223567888899889999999999999999875 445557777665433
Q ss_pred ---hhc-----------CHHHHHHHHHHHHHHHHhccc------cc----chhhhhhhhhhHHHHHhhhhhhhhhhhhhh
Q 006630 572 ---KLY-----------NRQIAAEITEKVRKMAAERQI------TF----KMYKRRGERDLKEKAKKQVDGRKRRARQRR 627 (638)
Q Consensus 572 ---~~g-----------~~~~A~~~~~~~~~~~p~~~~------~~----~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~ 627 (638)
+.+ +...|+.+++++.....+... ++ ++-...|...+...+-.++..+-||-++.+
T Consensus 554 ~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk~vKKrr~~~ 633 (677)
T KOG1915|consen 554 SEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPKKVKKRRKIQ 633 (677)
T ss_pred cccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccHHHHhhhhhh
Confidence 334 677899999998876544332 12 566677887788888888777776665444
Q ss_pred ccCC
Q 006630 628 WGGG 631 (638)
Q Consensus 628 ~~~~ 631 (638)
..-|
T Consensus 634 ~edG 637 (677)
T KOG1915|consen 634 REDG 637 (677)
T ss_pred cccC
Confidence 4333
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.77 E-value=1.5e-13 Score=136.53 Aligned_cols=462 Identities=11% Similarity=0.096 Sum_probs=258.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHH
Q 006630 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGC 214 (638)
Q Consensus 135 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ 214 (638)
+.|+..|.+.+ .....++|+.++.+..+.-|. +.. |.-++++..-++.|..+++...+. ++.+..+|.+
T Consensus 377 P~sv~LWKaAV----elE~~~darilL~rAveccp~--s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWit 445 (913)
T KOG0495|consen 377 PRSVRLWKAAV----ELEEPEDARILLERAVECCPQ--SMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWIT 445 (913)
T ss_pred CchHHHHHHHH----hccChHHHHHHHHHHHHhccc--hHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHH
Confidence 34555555433 334455566666666655433 222 333444555566666666665543 4555666655
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhc-----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 006630 215 LLDALCKNSSVKEAAKLFDEMRE-----RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD--IVVYNNLLSG 287 (638)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~ 287 (638)
-...--..|+.+...++.++-.. ++..+...|-.=...+-..|..--+..+....+..|+.-. ..||+.-...
T Consensus 446 aa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~ 525 (913)
T KOG0495|consen 446 AAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQS 525 (913)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHH
Confidence 55555556666666666554221 2333444444444444444444444444444444333211 2244444444
Q ss_pred HHHc----------------------------------CCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 006630 288 YAQM----------------------------------GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333 (638)
Q Consensus 288 ~~~~----------------------------------g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 333 (638)
|.+. |..+.-..+|++.... ++-....|.....-+-..|++..|.
T Consensus 526 ~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 526 CEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred HHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHH
Confidence 4444 4445555555544443 2223334444444455556666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006630 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413 (638)
Q Consensus 334 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 413 (638)
.++.+..+.. +.+...|-+-+.....+..++.|..+|.+.... .|+...|.--+...--.++.++|.+++++..+.
T Consensus 605 ~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~- 680 (913)
T KOG0495|consen 605 VILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS- 680 (913)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-
Confidence 6666655543 224455555555556666666666666655543 334444444444444455666666666665554
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHH
Q 006630 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493 (638)
Q Consensus 414 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~ 493 (638)
++.-...|-.+...+-+.++++.|...|..-.+. ++..+..|..|...-.+.|.+..|..+++...-.+ +.+...|
T Consensus 681 fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN---Pk~~~lw 756 (913)
T KOG0495|consen 681 FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN---PKNALLW 756 (913)
T ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC---CCcchhH
Confidence 2223344555555566666666666666554443 23334455555555556666666666666666555 3455566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhh
Q 006630 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573 (638)
Q Consensus 494 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 573 (638)
...+..-.+.|+.+.|..+..++++. ++.+...|..-|....+.++--.++..+++ .+-|+.....+...+...
T Consensus 757 le~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e 830 (913)
T KOG0495|consen 757 LESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSE 830 (913)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHH
Confidence 66666666666666666666666554 344455565555555555553333333222 245666677777778778
Q ss_pred cCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhHHHHHhhhhhhhhh
Q 006630 574 YNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLKEKAKKQVDGRKRR 622 (638)
Q Consensus 574 g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~~~~~~~~~~~~~ 622 (638)
.++++|++.++++++.+|++..++ ..+...|.-++-.+++.+-....++
T Consensus 831 ~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~ 883 (913)
T KOG0495|consen 831 KKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPT 883 (913)
T ss_pred HHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 899999999999999999988874 6778889888888888886655443
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=1.3e-13 Score=130.39 Aligned_cols=425 Identities=17% Similarity=0.192 Sum_probs=272.9
Q ss_pred HHHHHhhcCCCCChhHHHHHHH--HhccCchhHHHHHHHhhhCCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 006630 91 LELALQHSGVVLRPGLTERVIN--RCGDAGNLGYRYYMWASKQPN-YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE 167 (638)
Q Consensus 91 ~~~~l~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 167 (638)
+-+.|...|+++++.+-..++. .|.+..++.++-..|-..... -..+..+| +.|...+ ++-+..
T Consensus 137 lY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW--------K~G~vAd---L~~E~~-- 203 (625)
T KOG4422|consen 137 LYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW--------KSGAVAD---LLFETL-- 203 (625)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc--------ccccHHH---HHHhhc--
Confidence 4466778899999988766654 444555555544444332222 23444455 4455443 333332
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHh-ccCCCCHHHH
Q 006630 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHF 246 (638)
Q Consensus 168 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~ 246 (638)
|. ++.++..+|.++++--..+.|.+++++......+.+..+||.+|.+-.-.. ..++..+|. .+..||..|+
T Consensus 204 -PK--T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~Tf 276 (625)
T KOG4422|consen 204 -PK--TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTF 276 (625)
T ss_pred -CC--CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhH
Confidence 33 778999999999999999999999999887766889999999988754432 267788886 4689999999
Q ss_pred HHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhH-HHHHHHHHHH----cCCCC----CH
Q 006630 247 TSLLYGWCKEGKLVE----AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD-AFELLKEMRR----KGCDP----NA 313 (638)
Q Consensus 247 ~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~----~g~~~----~~ 313 (638)
|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.. +.+.| |.
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 999999999998765 56788899999999999999999999999887644 4444444433 22333 44
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006630 314 NSYTVLIQALCRMEKMEEANRAFVEMERSG----CEAD---VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386 (638)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 386 (638)
..|...+..|....+.+.|.++..-+.... +.|+ ..-|..+....|+....+.-+..|+.|.-.-..|+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 556777788888899999988876654321 2233 234566778888999999999999999988888999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006630 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466 (638)
Q Consensus 387 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 466 (638)
..++++..-.+.++-..+++..++..|...+.....-++..++ .....|+...-..+-....+.
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~----------------~~k~hp~tp~r~Ql~~~~ak~ 500 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLA----------------RDKLHPLTPEREQLQVAFAKC 500 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHh----------------cCCCCCCChHHHHHHHHHHHH
Confidence 9999999999999999999988887664333333222222222 222222221111111111110
Q ss_pred -CCHHHHHH-HHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHH---HHHHHHHccCC
Q 006630 467 -GCLIEACE-YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK-GCELNVYAWT---IWIHSLFSNGH 540 (638)
Q Consensus 467 -g~~~~A~~-~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~---~li~~~~~~g~ 540 (638)
-++.++.+ --.+|..... +| ..++.++-.+.+.|..++|.++|..+.+. +-.|.....| -+++.-.+...
T Consensus 501 aad~~e~~e~~~~R~r~~~~--~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~s 576 (625)
T KOG4422|consen 501 AADIKEAYESQPIRQRAQDW--PA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNS 576 (625)
T ss_pred HHHHHHHHHhhHHHHHhccC--Ch--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCC
Confidence 01112211 1223333332 22 23444444456666666666666666444 2222333333 33444455566
Q ss_pred HHHHHHHHHHHHhCC
Q 006630 541 VKEACSYCLDMMDAD 555 (638)
Q Consensus 541 ~~~A~~~~~~m~~~~ 555 (638)
...|+..++-|...+
T Consensus 577 psqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 577 PSQAIEVLQLASAFN 591 (625)
T ss_pred HHHHHHHHHHHHHcC
Confidence 666666666665443
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=7.6e-14 Score=132.74 Aligned_cols=434 Identities=14% Similarity=0.102 Sum_probs=291.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 006630 142 RALIKSLSKMRKFGAVWALMEEMRKEKPQLITT----EVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217 (638)
Q Consensus 142 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 217 (638)
-.+.+++.+.+.|.+|+++|+-....-|. .+. ..++.+.-.+.+.|.++.|+.-|+...+. .|+..+-..|+-
T Consensus 241 mnigni~~kkr~fskaikfyrmaldqvps-ink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i 317 (840)
T KOG2003|consen 241 MNIGNIHFKKREFSKAIKFYRMALDQVPS-INKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLII 317 (840)
T ss_pred eeecceeeehhhHHHHHHHHHHHHhhccc-cchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhh
Confidence 34557788889999999999877765443 232 33455555678999999999999998776 688877767777
Q ss_pred HHHhCCCHHHHHHHHHHHhcc-CCCCHHH--------HHHHH---------HHHHhcCC--HHHHHHHHHHHHHCCCCCC
Q 006630 218 ALCKNSSVKEAAKLFDEMRER-FKPSLRH--------FTSLL---------YGWCKEGK--LVEAKYVLVQMKDAGFEPD 277 (638)
Q Consensus 218 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~--------~~~li---------~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 277 (638)
++..-|+-++..+.|.+|..- ..+|..- -..|+ .-+-+.++ .++++-.-.+++.--+.|+
T Consensus 318 ~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~ 397 (840)
T KOG2003|consen 318 CAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPD 397 (840)
T ss_pred hheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccc
Confidence 777789999999999998753 2222221 12222 22222222 1222222222222112232
Q ss_pred HH-------------HH--------HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh--cCCHHHHHH
Q 006630 278 IV-------------VY--------NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR--MEKMEEANR 334 (638)
Q Consensus 278 ~~-------------~~--------~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~~A~~ 334 (638)
-. .+ ..-...+.+.|+++.|.++++-+.+..-..-...-+.|-..+.- ..++.+|.+
T Consensus 398 fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqq 477 (840)
T KOG2003|consen 398 FAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQ 477 (840)
T ss_pred hhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHH
Confidence 11 00 01123467899999999999988876433333333433333333 346778888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006630 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414 (638)
Q Consensus 335 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 414 (638)
+-+...... .-+......-.+.....|++++|.+.+++.+.....- ...+..+.-.+...|++++|++.|-++... +
T Consensus 478 yad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc-~ealfniglt~e~~~~ldeald~f~klh~i-l 554 (840)
T KOG2003|consen 478 YADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC-TEALFNIGLTAEALGNLDEALDCFLKLHAI-L 554 (840)
T ss_pred HHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH-HHHHHHhcccHHHhcCHHHHHHHHHHHHHH-H
Confidence 777766321 1122222222233445799999999999998763322 222233344567889999999998876543 2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHH
Q 006630 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494 (638)
Q Consensus 415 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~ 494 (638)
..+..+...+...|-...+..+|++++.+.... ++.|+....-|...|-+.|+-.+|.+++-+-.+.- +.+..|..
T Consensus 555 ~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryf---p~nie~ie 630 (840)
T KOG2003|consen 555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYF---PCNIETIE 630 (840)
T ss_pred HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccccc---CcchHHHH
Confidence 446777888888999999999999999887765 46778899999999999999999999877665543 46677777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhh
Q 006630 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH-SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573 (638)
Q Consensus 495 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 573 (638)
-|..-|....-.+.++.+|+++.- +.|+..-|..|+. ++.+.|+++.|..+|+..-+. +.-|...+.-|+..|...
T Consensus 631 wl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dl 707 (840)
T KOG2003|consen 631 WLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDL 707 (840)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccc
Confidence 777778888889999999998865 5899999998884 666889999999999987643 344555566667666665
Q ss_pred cCHHHHHHHHHHHHHH
Q 006630 574 YNRQIAAEITEKVRKM 589 (638)
Q Consensus 574 g~~~~A~~~~~~~~~~ 589 (638)
|- ..+.++.+++-+.
T Consensus 708 gl-~d~key~~klek~ 722 (840)
T KOG2003|consen 708 GL-KDAKEYADKLEKA 722 (840)
T ss_pred cc-hhHHHHHHHHHHH
Confidence 53 4455565555443
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.73 E-value=2.8e-12 Score=127.66 Aligned_cols=446 Identities=10% Similarity=0.072 Sum_probs=344.9
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH---hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCC--
Q 006630 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMR---KEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPD-- 208 (638)
Q Consensus 134 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~---~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~-- 208 (638)
.+.+...|-+-...=-.+|+.+...+++++-. +.++...+...|..=...|-..|..-.+..+....+..|+.-.
T Consensus 436 iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~ 515 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDR 515 (913)
T ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchh
Confidence 34455555555555555565555555554432 1223445555555555556566666666666666555554332
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006630 209 EFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288 (638)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 288 (638)
..||+.-.+.|.+.+.++-|..+|....+-+|-+...|...+..--..|..++-..+|++....- +-....|....+.+
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEK 594 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHH
Confidence 24666667778888999999999999888888899999999988888999999999999999763 45566777778888
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006630 289 AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368 (638)
Q Consensus 289 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 368 (638)
-..|+...|..++....+.... +...|-+-+..-....+++.|..+|.+.... .|+...|.--+...--.++.++|+
T Consensus 595 w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHH
Confidence 8899999999999999887444 7788999999999999999999999998875 567777766666666689999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006630 369 EILDSMIQRGILPN-QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA 447 (638)
Q Consensus 369 ~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 447 (638)
+++++.++. .|+ ...|..+...+-+.++++.|.+.|..-.+. ++..+..|-.|.+.--+.|.+-.|..+++...-+
T Consensus 672 rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 672 RLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 999999885 344 456777777888899999999888776654 4566677888888888999999999999999888
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 006630 448 SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYA 527 (638)
Q Consensus 448 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 527 (638)
+ +.+...|...|..-.+.|+.++|..+..+.++.- +.+...|..-|...-+.++-....+.+++ ++.|...
T Consensus 749 N-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec---p~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphV 819 (913)
T KOG0495|consen 749 N-PKNALLWLESIRMELRAGNKEQAELLMAKALQEC---PSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHV 819 (913)
T ss_pred C-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchh
Confidence 7 7788999999999999999999999999988875 34445666666666666664444444333 4557788
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 528 WTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 528 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
.-++...+....+++.|.+.|.+.++. .|| -.+|..+...+..+|.-+.-.+++.+....+|.+...+
T Consensus 820 llaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W 888 (913)
T KOG0495|consen 820 LLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELW 888 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHH
Confidence 888888999999999999999999865 454 56799999999999999999999999999999887764
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.72 E-value=2.8e-12 Score=132.72 Aligned_cols=123 Identities=10% Similarity=-0.023 Sum_probs=63.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHhC-C--CCCCHH-HH
Q 006630 493 LKALLNSLLRAQKVEMAKDVWSCIVTKG--CELNV---YAWTIWIHSLFSNGHVKEACSYCLDMMDA-D--VMPQPD-TF 563 (638)
Q Consensus 493 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~--~~p~~~-t~ 563 (638)
+..++.++++.+.+++|..+...+.... ..++. ..-..++.+.+..+++..|...++.|+.. + ..|... .|
T Consensus 629 ~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~ 708 (895)
T KOG2076|consen 629 FRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLW 708 (895)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3445556667777777777766665541 11111 12234455666677777777777776542 1 122222 24
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc-----chhhhhhhhhhHHHHHhh
Q 006630 564 AKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF-----KMYKRRGERDLKEKAKKQ 615 (638)
Q Consensus 564 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-----~~y~~~g~~~~A~~~~~~ 615 (638)
+..++...+.++-.--......+....|++...+ ......|.|..|...+-.
T Consensus 709 n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~r 765 (895)
T KOG2076|consen 709 NLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMR 765 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHH
Confidence 4345555555555555555555555555553221 334455666666654444
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.72 E-value=5.3e-12 Score=130.74 Aligned_cols=440 Identities=14% Similarity=0.118 Sum_probs=310.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCC
Q 006630 145 IKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS 224 (638)
Q Consensus 145 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 224 (638)
.+.+.-.|++++|..++.++.+.+|. ....|..|...|-..|+.+++...+-.+-... +.|...|..+.+...+.|.
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp~--~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDPR--NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCcc--chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhccc
Confidence 34444459999999999999998875 77789999999999999999998876555443 5677899999999999999
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHHcCCHhHHHHH
Q 006630 225 VKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY----NNLLSGYAQMGKMTDAFEL 300 (638)
Q Consensus 225 ~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~ll~~~~~~g~~~~a~~~ 300 (638)
++.|.-.|.+..+..|++....---+..|-+.|+...|.+-|.++.....+.|..-. -.++..+...++-+.|.+.
T Consensus 223 i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 223 INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999888888887777888999999999999999999987532222222 2345566777777888888
Q ss_pred HHHHHHcC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---------------------------HHHHH
Q 006630 301 LKEMRRKG-CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD---------------------------VVTYT 352 (638)
Q Consensus 301 ~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---------------------------~~~~~ 352 (638)
++.....+ -..+...+++++..|.+...++.|......+.....++| ...+.
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 88777632 233556788899999999999999888887766222222 22212
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006630 353 TLISGFCKSRKIDRCYEILDSMIQRGILP--NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430 (638)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 430 (638)
+.-++......+....+.....+..+.| +...|.-+..++...|++.+|..++..+......-+..+|-.+..+|..
T Consensus 383 -l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 383 -LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred -HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 2223344444444445555555555333 4567788888999999999999999999887555667888889999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC------CCCcHHHHHHHHHHHHHcC
Q 006630 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL------SAPQYGTLKALLNSLLRAQ 504 (638)
Q Consensus 431 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~------~~p~~~~~~~ll~~~~~~g 504 (638)
.|..++|.+.|+.+.... +-+...-..|...+.+.|+.++|.+.+..+...+.. ..|...........+...|
T Consensus 462 l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred HhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 999999999999988765 555667778888888999999999998886533210 1233334444445556666
Q ss_pred CHHHHHHHHHHHHHcC-----C---------------------------------------------CC-----------
Q 006630 505 KVEMAKDVWSCIVTKG-----C---------------------------------------------EL----------- 523 (638)
Q Consensus 505 ~~~~A~~~~~~~~~~~-----~---------------------------------------------~p----------- 523 (638)
+.++=..+-..|+... + .+
T Consensus 541 k~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~L 620 (895)
T KOG2076|consen 541 KREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGL 620 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccC
Confidence 6655333332222110 0 00
Q ss_pred CHH----HHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCHH---HHH-HHHHHHHhhcCHHHHHHHHHHHHHH
Q 006630 524 NVY----AWTIWIHSLFSNGHVKEACSYCLDMMDADV-MPQPD---TFA-KLMRGLKKLYNRQIAAEITEKVRKM 589 (638)
Q Consensus 524 ~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~---t~~-~ll~~~~~~g~~~~A~~~~~~~~~~ 589 (638)
... .+.-++..+++.|++++|..++..++.... .-+.. .+. ..+.++...+++..|....+-++..
T Consensus 621 siddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 621 SIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 111 223456678888999999998888876432 22222 233 3344556778999999888888877
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.1e-11 Score=119.08 Aligned_cols=440 Identities=10% Similarity=0.063 Sum_probs=331.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCH-HHHHHHHHH
Q 006630 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDE-FVFGCLLDA 218 (638)
Q Consensus 140 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~ 218 (638)
.|-....-=-..+++..|..+|++.+..+ ..+...|..-+..-.++..+..|..++++.+.. -|-+ ..|...+.+
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHH
Confidence 33333333345678889999999998764 347778888888888999999999999998865 3433 456666777
Q ss_pred HHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 006630 219 LCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298 (638)
Q Consensus 219 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 298 (638)
--..|++..|.++|++..+ ..|+...|++.|..-.+-+.++.|..++++.+-. .|++.+|.-..+.-.+.|+...+.
T Consensus 151 EE~LgNi~gaRqiferW~~-w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWME-WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHhcccHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHH
Confidence 7778999999999999776 4789999999999999999999999999999865 699999999999999999999999
Q ss_pred HHHHHHHHc-CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHH---HHHHH-
Q 006630 299 ELLKEMRRK-GC-DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD--VVTYTTLISGFCKSRKID---RCYEI- 370 (638)
Q Consensus 299 ~~~~~~~~~-g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~---~A~~~- 370 (638)
.+++...+. |- ..+...+.+....=.++..++.|.-+|.-..+.- +.+ ...|..+...--+-|+.. +++--
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 999988765 21 1123445555555566788999999998887652 222 344444444334455543 33322
Q ss_pred ----HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHH----HH----HHHHcCCHHH
Q 006630 371 ----LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV--SNYNVV----IR----LACKLGELKE 436 (638)
Q Consensus 371 ----~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l----i~----~~~~~g~~~~ 436 (638)
++.+++.+. -|-.+|-..+..-...|+.+...++|+..+.. ++|-. ..|... |+ --....+++.
T Consensus 307 Rk~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 307 RKFQYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhHHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 344555443 37788888888888889999999999999865 34421 111111 11 1235689999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 006630 437 AVNVWNEMEAASLSPGTDSFVVMV----HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDV 512 (638)
Q Consensus 437 A~~~~~~m~~~~~~p~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 512 (638)
+.++|+...+. ++....||.-+- .-..++.++..|.+++-..+.. .|...+|...|..-.+.++++.++.+
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~----cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK----CPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc----CCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 99999998884 344445555443 3445688999999999888765 48889999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 006630 513 WSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV-MPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAA 591 (638)
Q Consensus 513 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 591 (638)
+++.++.++. +..+|......-...|+.+.|..+|+-+++.+. .--...|.+.++--...|.+++|+.+++++++..+
T Consensus 460 YEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 460 YEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 9999987544 778898888888889999999999998887542 22345688888877888999999999999999887
Q ss_pred hccc
Q 006630 592 ERQI 595 (638)
Q Consensus 592 ~~~~ 595 (638)
....
T Consensus 539 h~kv 542 (677)
T KOG1915|consen 539 HVKV 542 (677)
T ss_pred cchH
Confidence 7664
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=4.2e-12 Score=121.77 Aligned_cols=368 Identities=15% Similarity=0.095 Sum_probs=188.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--
Q 006630 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY-- 281 (638)
Q Consensus 204 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-- 281 (638)
+...|.+.+....-.+.+.|....|+..|.......|-.-..|..|...... .+ ....... |.+.|..-+
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~---~e----~~~~l~~-~l~~~~h~M~~ 230 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD---IE----ILSILVV-GLPSDMHWMKK 230 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch---HH----HHHHHHh-cCcccchHHHH
Confidence 4456666665556666677788888888877776666666666665554321 11 1111111 112111111
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHH
Q 006630 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE--ADVVTYTTLISGFC 359 (638)
Q Consensus 282 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~~~~ 359 (638)
-.+..++-.....+++.+-.+.....|++-+...-+....+.-...++++|+.+|+++.+...- -|..+|..++ |.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv 308 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HH
Confidence 1233444455566666666666666666544444444444455556666666666666655100 1334444433 22
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006630 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439 (638)
Q Consensus 360 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 439 (638)
+..+- .+.++.+-...--+--+.|...+.+-|+-.++.++|...|++..+.+ +.....|+.+..-|....+...|+.
T Consensus 309 ~~~~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 309 KNDKS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred HhhhH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHH
Confidence 22211 11122111111111123344455555555566666666666666554 3344455555555666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006630 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519 (638)
Q Consensus 440 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 519 (638)
-++...+.+ +.|-..|-.|.++|.-.+.+.=|+-+|++...-. |.|...|.+|.++|.+.++.++|++.|..+...
T Consensus 386 sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k---PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 386 SYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK---PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 666666554 5555666666666666666666666666665544 345556666666666666666666666666554
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh----CCCCCCHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 006630 520 GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD----ADVMPQPDT--FAKLMRGLKKLYNRQIAAEITEKVRKM 589 (638)
Q Consensus 520 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~t--~~~ll~~~~~~g~~~~A~~~~~~~~~~ 589 (638)
|-. +...+..+...|-+.++.++|...|++.++ .|...+... ..-|..-+.+.+++++|..+..++.+-
T Consensus 462 ~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 462 GDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred ccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 322 345555566666666666666666555443 121111111 111333344556666666555555544
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.1e-12 Score=126.38 Aligned_cols=212 Identities=13% Similarity=0.053 Sum_probs=128.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006630 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475 (638)
Q Consensus 396 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 475 (638)
.|+.-.+.+-|+..++... .+...|.-+..+|....+.++..+.|++..+.+ +.|..+|..-...+.-.+++++|..-
T Consensus 339 ~g~~~~a~~d~~~~I~l~~-~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDP-AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCc-ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 4566666666666665532 222235555566666777777777777766665 55556666666666666667777777
Q ss_pred HHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006630 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555 (638)
Q Consensus 476 ~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 555 (638)
|++.+... +.+...|.-+.-+..+.++++++...|++..++ ++..+..|+....++...++++.|.+.|+..++.
T Consensus 417 F~Kai~L~---pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L- 491 (606)
T KOG0547|consen 417 FQKAISLD---PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL- 491 (606)
T ss_pred HHHHhhcC---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh-
Confidence 77766654 234445555555555666777777777776665 4445566666667777777777777777666543
Q ss_pred CCCC---------HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhHHHHHhhh
Q 006630 556 VMPQ---------PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLKEKAKKQV 616 (638)
Q Consensus 556 ~~p~---------~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~~~~~~~ 616 (638)
.|+ +.+...++..-.+ +|+..|..+++++++++|....++ .+-..+|+.++|.++|++.
T Consensus 492 -E~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 492 -EPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred -ccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 222 2222222222222 667777777777777777766554 3555667777777777663
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.9e-12 Score=122.90 Aligned_cols=353 Identities=12% Similarity=0.056 Sum_probs=257.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHH--hHHHH
Q 006630 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN--SYTVL 319 (638)
Q Consensus 242 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~--~~~~l 319 (638)
|...+-...-.+.+.|....|.+.|...+..- +-.-..|..|...+ -+.+.+ ..... |.+.|.. .--.+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~~----~~l~~-~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEIL----SILVV-GLPSDMHWMKKFFL 233 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHHH----HHHHh-cCcccchHHHHHHH
Confidence 44444444455667788899999998887542 22333333333322 222222 22222 2222211 11234
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcC
Q 006630 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL--PNQLTYLHIMLAHEKKE 397 (638)
Q Consensus 320 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~t~~~ll~~~~~~g 397 (638)
..+|-.....+++..-.......|++.+...-+....+.....++++|+.+|+++.+..+. -|..+|+.++-.-....
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 4566666788889888888888887766666565666677789999999999999987421 26778888775543322
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006630 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477 (638)
Q Consensus 398 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 477 (638)
.+.---+....+. +--+.|...+.+.|.-.++.++|...|+...+.+ +.....|+.|.+-|....+...|++-++
T Consensus 314 kLs~LA~~v~~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 314 KLSYLAQNVSNID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HHHHHHHHHHHhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 2221111111111 2334567778888999999999999999999987 6667899999999999999999999999
Q ss_pred HHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 006630 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557 (638)
Q Consensus 478 ~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 557 (638)
.+++-. +.|...|-+|..+|.-.+...-|.-+|+++.+.. +.|...|.+|..+|.+.++.++|++.|.+....| .
T Consensus 389 rAvdi~---p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 389 RAVDIN---PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHhcC---chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 999987 5899999999999999999999999999998863 3478999999999999999999999999998765 4
Q ss_pred CCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH-------Hhcccc--c--chhhhhhhhhhHHHHH
Q 006630 558 PQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA-------AERQIT--F--KMYKRRGERDLKEKAK 613 (638)
Q Consensus 558 p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~--~--~~y~~~g~~~~A~~~~ 613 (638)
.+...+..|.+.+.+.++.++|.+++++-++.. |+-..+ + +-+.+.+++++|...-
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 567889999999999999999999999999844 221111 1 5667889999888743
No 40
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=3.3e-12 Score=125.57 Aligned_cols=456 Identities=11% Similarity=-0.007 Sum_probs=285.2
Q ss_pred HhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchh--CC
Q 006630 127 WASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK--YG 204 (638)
Q Consensus 127 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~--~g 204 (638)
|+.+..+..-++..---+..+|.-.|+++.|..+...-.-. ..+..+......++.+..++++|..++..... .+
T Consensus 38 ~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le---~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~ 114 (611)
T KOG1173|consen 38 WADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE---KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNP 114 (611)
T ss_pred HHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcc
Confidence 55444444444444445667777778888777776554322 23666677777777888888888888773210 01
Q ss_pred CCCCHHH-H--------------HHH-------HHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC-CHHH
Q 006630 205 CEPDEFV-F--------------GCL-------LDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG-KLVE 261 (638)
Q Consensus 205 ~~~~~~~-~--------------~~l-------i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~ 261 (638)
+.-+..+ - +.- ...|....+.++|...|.+.... |+..+..+...-...= -.++
T Consensus 115 f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~---D~~c~Ea~~~lvs~~mlt~~E 191 (611)
T KOG1173|consen 115 FSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA---DAKCFEAFEKLVSAHMLTAQE 191 (611)
T ss_pred hhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc---chhhHHHHHHHHHHHhcchhH
Confidence 1111111 0 000 11233344556666666555433 3333333222111110 0112
Q ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 262 AKYVLVQMKDA-GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340 (638)
Q Consensus 262 A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 340 (638)
-.++|..+.-. -...+......+.....-...-+.....-++-.-.+..-+......-.+-+...+++.+..++++.+.
T Consensus 192 e~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~ll 271 (611)
T KOG1173|consen 192 EFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELL 271 (611)
T ss_pred HHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHH
Confidence 22222211000 00111112222211110000000000000001111234455666667777888899999999999988
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006630 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420 (638)
Q Consensus 341 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 420 (638)
+.. ++....+..-|.++...|+..+-+.+=.+|.+.-+ -...+|-++..-|...|+..+|.+.|.+....+ +.-...
T Consensus 272 e~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP-~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpa 348 (611)
T KOG1173|consen 272 EKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYP-SKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPA 348 (611)
T ss_pred hhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHH
Confidence 764 55666666667788889998888888888887633 367788888888888899999999999887654 333456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q 006630 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500 (638)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~ 500 (638)
|-.+...|.-.|..|+|...+....+.- +-....+.-+..-|.+.++.+-|.++|.+..... |.|+..++.+.-..
T Consensus 349 Wl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~---P~Dplv~~Elgvva 424 (611)
T KOG1173|consen 349 WLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA---PSDPLVLHELGVVA 424 (611)
T ss_pred HHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC---CCcchhhhhhhhee
Confidence 7788888999999999999888776541 2223345556667888899999999999988765 45666677766666
Q ss_pred HHcCCHHHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhc
Q 006630 501 LRAQKVEMAKDVWSCIVTK--GCEL----NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLY 574 (638)
Q Consensus 501 ~~~g~~~~A~~~~~~~~~~--~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 574 (638)
...+.+.+|..+|+..+.. ...+ -..+++.|.++|.+.+++++|+..+++.+... .-|..|+.++.-.+...|
T Consensus 425 y~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llg 503 (611)
T KOG1173|consen 425 YTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLG 503 (611)
T ss_pred ehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhc
Confidence 7788999999999888733 1111 23457888999999999999999999988652 446778888888899999
Q ss_pred CHHHHHHHHHHHHHHHHhcccc
Q 006630 575 NRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 575 ~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
+++.|.+.+.+++-+.|++...
T Consensus 504 nld~Aid~fhKaL~l~p~n~~~ 525 (611)
T KOG1173|consen 504 NLDKAIDHFHKALALKPDNIFI 525 (611)
T ss_pred ChHHHHHHHHHHHhcCCccHHH
Confidence 9999999999999999998654
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.64 E-value=9.6e-16 Score=149.63 Aligned_cols=259 Identities=15% Similarity=0.132 Sum_probs=100.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006630 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLT-YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431 (638)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 431 (638)
.+...+.+.|++++|+++++........|+... |..+...+...++.+.|.+.++.+.+.+ +.+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 345666677777777777755444332233333 3334445556777888888888777654 2355566666666 677
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006630 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511 (638)
Q Consensus 432 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 511 (638)
+++++|.+++...-+. .++...+..++..+...++++++..+++.+....- .+++...|..+...+.+.|+.++|.+
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA-APDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T----T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888776554 35556677778888888888888888888775432 13566677777788888888888888
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 006630 512 VWSCIVTKGCEL-NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590 (638)
Q Consensus 512 ~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 590 (638)
.++++++. .| |....+.++..+...|+.+++.+++....+.. ..|+..|..+..++...|++++|..+++++.+.+
T Consensus 168 ~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 168 DYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 88888886 34 46777888888888888888888877776542 4455667788888888888888998888888888
Q ss_pred Hhccccc----chhhhhhhhhhHHHHHhhhhhh
Q 006630 591 AERQITF----KMYKRRGERDLKEKAKKQVDGR 619 (638)
Q Consensus 591 p~~~~~~----~~y~~~g~~~~A~~~~~~~~~~ 619 (638)
|+|+..+ +++...|+.++|.++++++-..
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp TT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 8888775 6788888888888888875443
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.64 E-value=2.6e-12 Score=131.26 Aligned_cols=251 Identities=9% Similarity=0.016 Sum_probs=117.2
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCCHHhH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006630 289 AQMGKMTDAFELLKEMRRKGCDPNANSY--TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366 (638)
Q Consensus 289 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 366 (638)
.+.|+++.|.+.+.++.+. .|+...+ ......+...|++++|...++++.+.. +-+......+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 4444555555555444432 2222111 122344455555555555555555443 2234445555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006630 367 CYEILDSMIQRGILPNQL-------TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439 (638)
Q Consensus 367 A~~~~~~m~~~~~~p~~~-------t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 439 (638)
|.+++..+.+.+..++.. +|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 555555555543331110 1111122222222333333344333222 13345555555555666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006630 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519 (638)
Q Consensus 440 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 519 (638)
++++..+. +||.... ++.+....++.+++++..+...+.. +.+...+..+...|.+.+++++|.+.|+.+.+.
T Consensus 285 ~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~---P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 285 IILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH---GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 66555542 3333111 2222233455555555555555544 233344445555555555555555555555553
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006630 520 GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552 (638)
Q Consensus 520 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 552 (638)
.|+...+..+..++.+.|+.++|..++++.+
T Consensus 358 --~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 358 --RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555555555555555555555543
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.62 E-value=3.6e-12 Score=131.05 Aligned_cols=297 Identities=11% Similarity=0.079 Sum_probs=172.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHH
Q 006630 254 CKEGKLVEAKYVLVQMKDAGFEPD-IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332 (638)
Q Consensus 254 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 332 (638)
...|+++.|.+.+.+..+. .|+ ...+-....+....|+.+.|.+.+.+..+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4567888888877776655 333 3334444566667777888877777776542222222333346667777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHH
Q 006630 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHI-MLAHEKKEELEECVELMGEMRK 411 (638)
Q Consensus 333 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l-l~~~~~~g~~~~a~~~~~~~~~ 411 (638)
...++.+.+.. +-+...+..+...|.+.|++++|.+++..+.+.+.. +...+..+ ..++
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~------------------ 232 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAE------------------ 232 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH------------------
Confidence 77777777664 335566777777777777777777777777776543 22222111 1110
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHH
Q 006630 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491 (638)
Q Consensus 412 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~ 491 (638)
..++..-......+...+.++...+. .+.+...+..++..+...|+.++|.+.+++..+.. |+..
T Consensus 233 ----------~~~l~~~~~~~~~~~L~~~~~~~p~~-~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~----pd~~ 297 (409)
T TIGR00540 233 ----------IGLLDEAMADEGIDGLLNWWKNQPRH-RRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL----GDDR 297 (409)
T ss_pred ----------HHHHHHHHHhcCHHHHHHHHHHCCHH-HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC----CCcc
Confidence 00010000011112222222222211 01355666666677777777777777777776654 2222
Q ss_pred HH-HHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCC-H--HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006630 492 TL-KALLNS--LLRAQKVEMAKDVWSCIVTKGCELN-V--YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAK 565 (638)
Q Consensus 492 ~~-~~ll~~--~~~~g~~~~A~~~~~~~~~~~~~p~-~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 565 (638)
.. ..++.. ....++.+.+.+.++...+. .|+ . ....++...+.+.|++++|.++|+........|+..++..
T Consensus 298 ~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~ 375 (409)
T TIGR00540 298 AISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAM 375 (409)
T ss_pred cchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHH
Confidence 10 001111 22346667777777777665 232 3 4556777888888888888888885333344788877778
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHH
Q 006630 566 LMRGLKKLYNRQIAAEITEKVRKM 589 (638)
Q Consensus 566 ll~~~~~~g~~~~A~~~~~~~~~~ 589 (638)
+...+.+.|+.++|.+++++.+..
T Consensus 376 La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 376 AADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888888877554
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=4.3e-12 Score=129.71 Aligned_cols=222 Identities=12% Similarity=0.091 Sum_probs=116.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH-------HhHHHHHHHH
Q 006630 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA-------NSYTVLIQAL 323 (638)
Q Consensus 251 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~~ 323 (638)
..+...|++++|...++++.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++...
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433 223334444444444444444444444444443322111 1222233333
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006630 324 CRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403 (638)
Q Consensus 324 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 403 (638)
....+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+. .|+... .++.+....++.+++.
T Consensus 240 ~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al 314 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLE 314 (398)
T ss_pred HHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHH
Confidence 3333444444555544332 1335555666666666666666666666666553 223311 1223333446666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006630 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481 (638)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (638)
+..+...+.. +-|...+.++...+.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 315 ~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 315 KVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666543 445555666666777777777777777777664 46666666777777777777777777766543
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.60 E-value=4.6e-12 Score=130.23 Aligned_cols=291 Identities=13% Similarity=0.071 Sum_probs=142.0
Q ss_pred cCCHHHHHHHHHhchhCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCH-HHHHHHHHHHHhcCCHHHHHH
Q 006630 187 ARMVKKAIEVLDEMPKYGCEPDE-FVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSL-RHFTSLLYGWCKEGKLVEAKY 264 (638)
Q Consensus 187 ~~~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~ 264 (638)
.|+++.|.+.+....+. .|+. ..+-....++...|+.+.|.+.|.+..+..+.+. .........+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 45555555555444433 2222 2222223444444555555555555443322221 222223445555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHH---HhcCCHHHHHHHHHHHHH
Q 006630 265 VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQAL---CRMEKMEEANRAFVEMER 341 (638)
Q Consensus 265 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~ 341 (638)
.++.+.+.+ +-+...+..+...+...|++++|.+++..+.+.+..+.......-...+ ...+..+++.+.+..+.+
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 555555543 2234445555555555555555555555555544321111111111111 111222222223333332
Q ss_pred cCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006630 342 SGC---EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY-LHIMLAHEKKEELEECVELMGEMRKIGCVPD 417 (638)
Q Consensus 342 ~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 417 (638)
... +.+...+..+...+...|+.++|.+++++..+.........+ ..........++.+.+.+.++...+.. +-|
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~ 332 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDK 332 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCC
Confidence 210 125566666666666666666666666666664322111111 111111223455666666666665542 333
Q ss_pred H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006630 418 V--SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481 (638)
Q Consensus 418 ~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (638)
+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 455566777777777777777777433333357777777777777777777777777776543
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=5.9e-12 Score=115.45 Aligned_cols=290 Identities=10% Similarity=0.128 Sum_probs=197.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC---HHhHHHHHHHHHhcCCHHH
Q 006630 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN---ANSYTVLIQALCRMEKMEE 331 (638)
Q Consensus 255 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~ 331 (638)
-+++.++|.++|-+|.+.. +-+..+.-+|.+.|.+.|..+.|+++++.+.++---+. ......|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3577888888888888753 33445566788888899999999999998887511111 2334567778899999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHH
Q 006630 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL----TYLHIMLAHEKKEELEECVELMG 407 (638)
Q Consensus 332 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~ 407 (638)
|+.+|..+.+.+ ..-......|+..|-+..+|++|++.-+++.+.+..+..+ .|.-+...+....+++.|..++.
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999998754 3345677788999999999999999999888876554432 34444555556677888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006630 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487 (638)
Q Consensus 408 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 487 (638)
+..+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++...++..+.+..
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~---- 279 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN---- 279 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc----
Confidence 877654 333334445566778888888888888888877633334566677788888888888888888887764
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHh
Q 006630 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS---NGHVKEACSYCLDMMD 553 (638)
Q Consensus 488 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~ 553 (638)
+.......+........-.+.|..++.+-+.. .|+...+..+++.-.. .|...+.+..+++|+.
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 22222233333333334455555555554444 6777777777765543 3456666666666654
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=1.1e-14 Score=142.24 Aligned_cols=127 Identities=14% Similarity=0.099 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHH
Q 006630 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497 (638)
Q Consensus 418 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll 497 (638)
...|..+...+.+.|+.++|++.|++..+.. |.|....+.++..+...|+.+++.++++...... +.+...+..+.
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~---~~~~~~~~~la 221 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA---PDDPDLWDALA 221 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----HTSCCHCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC---cCHHHHHHHHH
Confidence 3333334444444444444444444444332 2223334444444444444444444433333322 11222233334
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006630 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCL 549 (638)
Q Consensus 498 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 549 (638)
.++...|+.++|...|++..+.. +.|......+.+++...|+.++|..+.+
T Consensus 222 ~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 222 AAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-------------
T ss_pred HHhcccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 44444444444444444443321 1133333444444444444444444433
No 48
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.57 E-value=2.5e-09 Score=106.99 Aligned_cols=283 Identities=12% Similarity=0.170 Sum_probs=168.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcC
Q 006630 327 EKMEEANRAFVEMERSGCEAD------VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN---QLTYLHIMLAHEKKE 397 (638)
Q Consensus 327 g~~~~A~~~~~~m~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~g 397 (638)
|+..+-...|.+..+. +.|- ...|..+...|-..|+.+.|..+|++..+...+-- ..+|..-...-.+..
T Consensus 361 ~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred CChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence 4455555555555442 1111 23466777777778888888888877766533211 123333334444566
Q ss_pred CHHHHHHHHHHHHHCCC-----------CC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006630 398 ELEECVELMGEMRKIGC-----------VP------DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460 (638)
Q Consensus 398 ~~~~a~~~~~~~~~~~~-----------~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 460 (638)
+++.|.++++......- ++ +..+|...++.--..|-++....+|+.+.+..+. ++.......
T Consensus 440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyA 518 (835)
T KOG2047|consen 440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYA 518 (835)
T ss_pred hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 77777777766542110 11 2234455555555677777777888877765432 222222223
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCc-HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--HH
Q 006630 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQ-YGTLKALLNSLLR---AQKVEMAKDVWSCIVTKGCELNVYAWTIWI--HS 534 (638)
Q Consensus 461 ~~~~~~g~~~~A~~~~~~m~~~~~~~~p~-~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~li--~~ 534 (638)
..+-.+.-++++.+.|++-+..-. .|+ ...|+..+.-+.+ ..+++.|+.+|+++++ |++|...-+--++ ..
T Consensus 519 mfLEeh~yfeesFk~YErgI~LFk--~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~l 595 (835)
T KOG2047|consen 519 MFLEEHKYFEESFKAYERGISLFK--WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKL 595 (835)
T ss_pred HHHHhhHHHHHHHHHHHcCCccCC--CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHH
Confidence 334456667777777765544322 343 4456665555442 3468899999999988 5666544332222 22
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc------cchhhhhhhh
Q 006630 535 LFSNGHVKEACSYCLDMMDADVMPQP--DTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT------FKMYKRRGER 606 (638)
Q Consensus 535 ~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~------~~~y~~~g~~ 606 (638)
--+.|....|+.+++++.. ++++.. ..|+..+.-....--....+.+++++++.-|+.... .++-.+.|+.
T Consensus 596 EEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEi 674 (835)
T KOG2047|consen 596 EEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEI 674 (835)
T ss_pred HHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhH
Confidence 2356888899999988754 344432 346666665555445667788999999988876554 1677788888
Q ss_pred hhHHHHHhh
Q 006630 607 DLKEKAKKQ 615 (638)
Q Consensus 607 ~~A~~~~~~ 615 (638)
+.|..++.-
T Consensus 675 dRARaIya~ 683 (835)
T KOG2047|consen 675 DRARAIYAH 683 (835)
T ss_pred HHHHHHHHh
Confidence 888887653
No 49
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=3.8e-11 Score=116.06 Aligned_cols=425 Identities=12% Similarity=0.045 Sum_probs=262.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCH-HHHHHHHHHHH
Q 006630 142 RALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDE-FVFGCLLDALC 220 (638)
Q Consensus 142 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~ 220 (638)
....+-+.++|.+++|++.|.+.....|.. +..|.....+|...|++++..+.-...++. .|+- -.+.--..++-
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~e--piFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDE--PIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHE 194 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCCCC--chhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHH
Confidence 344566778999999999999998877542 567888888999999999998888877765 4553 34555555666
Q ss_pred hCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHH--------HHHHH-CC--CCCCHHHHHHHHHHHH
Q 006630 221 KNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVL--------VQMKD-AG--FEPDIVVYNNLLSGYA 289 (638)
Q Consensus 221 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~--------~~m~~-~g--~~p~~~~~~~ll~~~~ 289 (638)
..|++++|+.=. |-.++..++....-.--+.+++ ++-.+ .+ +-|......+....+.
T Consensus 195 ~lg~~~eal~D~------------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~ 262 (606)
T KOG0547|consen 195 QLGKFDEALFDV------------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFH 262 (606)
T ss_pred hhccHHHHHHhh------------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcc
Confidence 667777664211 1122222222111111122222 22111 22 2233333333222221
Q ss_pred HcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHHc---CC---CCC------HHHHHHHHH
Q 006630 290 QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM-EKMEEANRAFVEMERS---GC---EAD------VVTYTTLIS 356 (638)
Q Consensus 290 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~---g~---~~~------~~~~~~li~ 356 (638)
.. +. ..+...+-..|...-..+=..+... ..+..|...+.+-... .. ..| ..+...-..
T Consensus 263 ~~--~~------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gt 334 (606)
T KOG0547|consen 263 AD--PK------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGT 334 (606)
T ss_pred cc--cc------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhh
Confidence 10 00 0000000001111111111111110 1223333332221110 00 011 111111222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006630 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436 (638)
Q Consensus 357 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 436 (638)
.+.-.|+.-.|..-|+..++....++. .|.-+...|....+.++....|....+.+ +.+..+|..-..++.-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHH
Confidence 344568888899999988886555433 26667778888899999999999988876 5677788887888888899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006630 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI 516 (638)
Q Consensus 437 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 516 (638)
|..-|++.+..+ +-+...|..+..+..+.+++++++..|++....- |.....|+-....+...++++.|.+.|+..
T Consensus 413 A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF---P~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 413 AIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF---PNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 999999998876 5667788888888888999999999999998876 345667888888899999999999999999
Q ss_pred HHcCCCCC---------HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 006630 517 VTKGCELN---------VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKV 586 (638)
Q Consensus 517 ~~~~~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~ 586 (638)
+.. +|+ +..-.+++-.- -.+++..|..++++.++. .|. ...|.+|...-...|+.++|++++++.
T Consensus 489 i~L--E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 489 IEL--EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred Hhh--ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 876 332 11111222111 338899999999998854 554 445888888888999999999999999
Q ss_pred HHHHHhcccccchhh
Q 006630 587 RKMAAERQITFKMYK 601 (638)
Q Consensus 587 ~~~~p~~~~~~~~y~ 601 (638)
..+.-.....+++|.
T Consensus 564 a~lArt~~E~~~a~s 578 (606)
T KOG0547|consen 564 AQLARTESEMVHAYS 578 (606)
T ss_pred HHHHHhHHHHHHHHH
Confidence 988776666655543
No 50
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=7.5e-13 Score=132.82 Aligned_cols=289 Identities=13% Similarity=0.102 Sum_probs=173.7
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006630 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG--CEADVVTYTTLISGFCKSRKIDRCYEI 370 (638)
Q Consensus 293 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~ 370 (638)
+..+|...|..+... ..-...+...+..+|...+++++|+++|+.+.+.. ...+...|.+.+.-+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 345566666654433 12122444555666666666666666666665431 01134455554432211 122222
Q ss_pred H-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 006630 371 L-DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASL 449 (638)
Q Consensus 371 ~-~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 449 (638)
+ +.+... -+-.+.+|..+.++|+-+++.+.|++.|++.++.+ +-...+|+.+..-+.....+|.|...|+.....+
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 2 222222 22255667677777777777777777777766643 2255666666666666677777777777766543
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006630 450 SPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529 (638)
Q Consensus 450 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 529 (638)
+-+...|--+...|.++++++.|.-.|+.+.+.+ +-+......+...+-+.|+.++|+++++++...+.+ |+..--
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN---P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~ 561 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN---PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKY 561 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC---ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHH
Confidence 3333455556667777777777777777777665 345555556666667777777777777777765333 444444
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccc
Q 006630 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595 (638)
Q Consensus 530 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 595 (638)
..+..+...+++++|+..++++.+. .|+ ...+..+...|.+.|+.+.|..-+.-+..++|....
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 4556667777888888887777653 554 345667777777788888888777777777776544
No 51
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=7.3e-13 Score=132.93 Aligned_cols=286 Identities=13% Similarity=0.079 Sum_probs=228.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006630 328 KMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI--LPNQLTYLHIMLAHEKKEELEECVEL 405 (638)
Q Consensus 328 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~t~~~ll~~~~~~g~~~~a~~~ 405 (638)
+.++|...|..+.+.- .-.......+..+|...+++++|.++|+.+.+... .-+...|.+++--+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 4578999999966552 22345666788999999999999999999987531 22667888777654332 22333
Q ss_pred HH-HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006630 406 MG-EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484 (638)
Q Consensus 406 ~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 484 (638)
+. .+.+. -+..+.+|.++..+|.-.++.+.|++.|++....+ +-...+|+.+..-+.....++.|...|+..+...
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 32 33333 26678999999999999999999999999999876 4467899999999999999999999999998876
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006630 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFA 564 (638)
Q Consensus 485 ~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 564 (638)
+-++.+|-.+.-.|.+.++++.|+-.|+++++.+.. +.+....+...+.+.|+.++|+++++++.... .-|+..-.
T Consensus 486 --~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~ 561 (638)
T KOG1126|consen 486 --PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKY 561 (638)
T ss_pred --chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHH
Confidence 467889999999999999999999999999986433 66777788889999999999999999998653 23455544
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhHHHHHhhhhhhhhhhhh
Q 006630 565 KLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLKEKAKKQVDGRKRRARQ 625 (638)
Q Consensus 565 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~~~~~~~~~~~~~~~~ 625 (638)
.-...+...+++++|.+.++++.++-|++...+ .+|.+.|+.+.|...|--+.+...|..+
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 555667778999999999999999999998875 6999999999999999887666665443
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=2.9e-11 Score=111.00 Aligned_cols=294 Identities=16% Similarity=0.145 Sum_probs=140.0
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCH------HHHHHHHHHHHhCCC
Q 006630 151 MRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDE------FVFGCLLDALCKNSS 224 (638)
Q Consensus 151 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~ 224 (638)
.++.++|.++|-+|.+.+|. +.++-.+|...|-+.|..+.|+.+++.+.+. ||. .+...|..-|...|-
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~--t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE--TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hcCcchHHHHHHHHHhcCch--hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhh
Confidence 45677777777777776543 5555666777777777777777777766653 331 223344455555666
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHcCCHhHHHHH
Q 006630 225 VKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV----VYNNLLSGYAQMGKMTDAFEL 300 (638)
Q Consensus 225 ~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~g~~~~a~~~ 300 (638)
+|.|+.+|..+.+...--......|+..|-...++++|++.-+++.+.+-.+..+ .|.-+...+....+++.|..+
T Consensus 123 ~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 123 LDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 6666666665544212223344455555555555555555555555443222211 222222223333344444444
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006630 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380 (638)
Q Consensus 301 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 380 (638)
+.+..+.... ++..--.+.+.+. ..|++..|++.++...+.+..
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~-----------------------------------~~g~y~~AV~~~e~v~eQn~~ 246 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVEL-----------------------------------AKGDYQKAVEALERVLEQNPE 246 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHH-----------------------------------hccchHHHHHHHHHHHHhChH
Confidence 4444433211 2222223334444 444444444444444444332
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006630 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460 (638)
Q Consensus 381 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 460 (638)
--..+...+..+|...|+.+++...+..+.+.. +....-..+.+.-....-.+.|...+.+-..+ +|+...+..+|
T Consensus 247 yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~ 322 (389)
T COG2956 247 YLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLM 322 (389)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHH
Confidence 223334444444455555555554444444432 12222222222222233334444444443333 46666666666
Q ss_pred HHHHh---cCCHHHHHHHHHHHHhCCCCCCCc
Q 006630 461 HGFLG---QGCLIEACEYFKEMVGRGLLSAPQ 489 (638)
Q Consensus 461 ~~~~~---~g~~~~A~~~~~~m~~~~~~~~p~ 489 (638)
..-.. .|...+.+.+++.|....+...|.
T Consensus 323 ~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 323 DYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred HhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 54432 344555566666666544332343
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.54 E-value=1.1e-10 Score=110.60 Aligned_cols=286 Identities=13% Similarity=0.073 Sum_probs=188.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 006630 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335 (638)
Q Consensus 256 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 335 (638)
.|++..|+++..+-.+.+ +-....|..-..+.-..|+.+.+-..+.+.-+..-.++..++-.........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 567777777777766655 2234455555666667777777777777776654455666666677777777777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 006630 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ-------LTYLHIMLAHEKKEELEECVELMGE 408 (638)
Q Consensus 336 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~t~~~ll~~~~~~g~~~~a~~~~~~ 408 (638)
.+++.+.+ +.+.........+|.+.|++.+...++..|.+.|.--+. .++..+++-+...+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 77777665 445667777777888888888888888888777765443 3555666655555555555555655
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 006630 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488 (638)
Q Consensus 409 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p 488 (638)
.... ...++..-.+++.-+.++|+.++|.++..+..+++..|. -...-.+.+-++.+.-++..+.-.... +.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h---~~ 326 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH---PE 326 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC---CC
Confidence 5433 244555666677777788888888888877777654444 122223445566666666666655544 23
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006630 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553 (638)
Q Consensus 489 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 553 (638)
++..+.+|...|.+.+.+.+|...|+..++. .|+..+|+.+.++|.+.|+..+|.+..++.+.
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3456666777777777777777777766654 67777777777777777777777777766553
No 54
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.7e-10 Score=113.87 Aligned_cols=465 Identities=11% Similarity=0.058 Sum_probs=303.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 006630 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDA 218 (638)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 218 (638)
.-+..+++-+..+.++.-|.-+-++..... .++...-.+.+++.-.|+++.|..+...-.-. ..|..+.......
T Consensus 17 ~~~~~~~r~~l~q~~y~~a~f~adkV~~l~---~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~ 91 (611)
T KOG1173|consen 17 EKYRRLVRDALMQHRYKTALFWADKVAGLT---NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKC 91 (611)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhcc---CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHH
Confidence 334444444445556667777777766554 24445556788888888999888877654322 4677888888889
Q ss_pred HHhCCCHHHHHHHHHHH----hc--cCCCC--------HHH----HHHHH-------HHHHhcCCHHHHHHHHHHHHHCC
Q 006630 219 LCKNSSVKEAAKLFDEM----RE--RFKPS--------LRH----FTSLL-------YGWCKEGKLVEAKYVLVQMKDAG 273 (638)
Q Consensus 219 ~~~~g~~~~A~~~~~~~----~~--~~~~~--------~~~----~~~li-------~~~~~~g~~~~A~~~~~~m~~~g 273 (638)
+.+..++++|..++... .. ..+.+ ..- -+.-. ..|....+.++|...|.+....
T Consensus 92 l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~- 170 (611)
T KOG1173|consen 92 LVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA- 170 (611)
T ss_pred HHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc-
Confidence 99999999999888732 10 01111 111 11111 2233445566666666666533
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC----CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 006630 274 FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC----DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVV 349 (638)
Q Consensus 274 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 349 (638)
|...|..+...-.. .+-.+.+.++.+..... ..+......+.....-...-+.....-.+..-.+...+..
T Consensus 171 ---D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~d 245 (611)
T KOG1173|consen 171 ---DAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLD 245 (611)
T ss_pred ---chhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHH
Confidence 44434333221111 11112222222222110 1112222222211100000000111111011112344666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006630 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429 (638)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 429 (638)
....-..-+...+++.+.+++++...+... +....+..-|.++...|+..+-..+-..+.+. .|..+.+|-++.-.|.
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHH
Confidence 666677778889999999999999988632 34445555566888888888777777777765 3677889999999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHH
Q 006630 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509 (638)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A 509 (638)
-.|+..+|++.|.+....+ +.=...|......|+..|..++|+..+..+.+.-. -....+.-+.--|.+.++++.|
T Consensus 324 ~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~---G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP---GCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc---CCcchHHHHHHHHHHhccHHHH
Confidence 9999999999999987654 22335899999999999999999998888776421 1112223345568899999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHhhcCHHHHHHHH
Q 006630 510 KDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA--DVMP----QPDTFAKLMRGLKKLYNRQIAAEIT 583 (638)
Q Consensus 510 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p----~~~t~~~ll~~~~~~g~~~~A~~~~ 583 (638)
.++|.++... .+.|+...+-+.-.....+.+.+|..+|+..+.. .+.+ -..+++.|+.+|++.+.+++|+..+
T Consensus 400 e~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 400 EKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 9999999876 3446777888877777889999999999987631 1111 2346889999999999999999999
Q ss_pred HHHHHHHHhccccc----chhhhhhhhhhHHHHHhhhhhhhh
Q 006630 584 EKVRKMAAERQITF----KMYKRRGERDLKEKAKKQVDGRKR 621 (638)
Q Consensus 584 ~~~~~~~p~~~~~~----~~y~~~g~~~~A~~~~~~~~~~~~ 621 (638)
++++.+.|+++..+ -+|...|+.+.|...|.+.-...+
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 99999999999887 489999999999999998554444
No 55
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.8e-09 Score=101.18 Aligned_cols=407 Identities=14% Similarity=0.048 Sum_probs=263.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhccCCCCHHHHHHH
Q 006630 171 LITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNS-SVKEAAKLFDEMRERFKPSLRHFTSL 249 (638)
Q Consensus 171 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l 249 (638)
..+.+.-...+.+|...++-+.|...+...+..- ...--|.++..+-+.| +-.++.--+.......|--...
T Consensus 94 ~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~---r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~---- 166 (564)
T KOG1174|consen 94 FGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL---RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQV---- 166 (564)
T ss_pred cccHHHHHHHHHHHHHHccchHHHHHHhcCCccc---cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHH----
Confidence 3455566667888888888888888877765431 1122233333333333 2222222222222211111111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cCCHhHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHhc
Q 006630 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ--MGKMTDAFELLKEMRRK-GCDPNANSYTVLIQALCRM 326 (638)
Q Consensus 250 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~ 326 (638)
|.+..+.+ +..+...=..|-...++|...+....+.+++. .++...+.+.+-.+... -++-|+.....+.+.+...
T Consensus 167 i~~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~ 245 (564)
T KOG1174|consen 167 IEALLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYN 245 (564)
T ss_pred HHHHHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhh
Confidence 11111110 00011111123333344544455555555444 45555555555444433 3666788899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006630 327 EKMEEANRAFVEMERSGCEADVV-TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405 (638)
Q Consensus 327 g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 405 (638)
|+.++|...|++.... .|+.. ......-.+.+.|+.++...+...+....-. ....|..-+......++++.|+.+
T Consensus 246 Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~-ta~~wfV~~~~l~~~K~~~rAL~~ 322 (564)
T KOG1174|consen 246 GDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY-TASHWFVHAQLLYDEKKFERALNF 322 (564)
T ss_pred cCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc-chhhhhhhhhhhhhhhhHHHHHHH
Confidence 9999999999998754 33322 1222233456788999888888887764211 222232333444567888999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006630 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485 (638)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 485 (638)
-++.++.+ +-+...|-.-...+...|++++|.-.|+.....- +-+..+|.-|+..|...|++.||.-+-....+.-
T Consensus 323 ~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-- 398 (564)
T KOG1174|consen 323 VEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-- 398 (564)
T ss_pred HHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--
Confidence 88888764 3444555444567788999999999999988764 5678999999999999999999998888776653
Q ss_pred CCCcHHHHHHHH-HHHHH-cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 006630 486 SAPQYGTLKALL-NSLLR-AQKVEMAKDVWSCIVTKGCELN-VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562 (638)
Q Consensus 486 ~~p~~~~~~~ll-~~~~~-~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 562 (638)
+.+..++..+. ..|.- ..--++|.+++++.++. .|+ ....+.+...+...|..++++.++++.+.. .||...
T Consensus 399 -~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~L 473 (564)
T KOG1174|consen 399 -QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNL 473 (564)
T ss_pred -hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHH
Confidence 24444544442 23332 22347899999988775 565 345677788889999999999999998854 899999
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 563 FAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 563 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
.+.|.+.+...+.+++|.+.+..++.++|++...+
T Consensus 474 H~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 474 HNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 99999999999999999999999999999988775
No 56
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.48 E-value=5.5e-09 Score=104.92 Aligned_cols=464 Identities=13% Similarity=0.130 Sum_probs=287.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHH
Q 006630 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219 (638)
Q Consensus 140 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 219 (638)
.+..++..| ..+++...+++.+.+.+..|..++ +.....-.+...|+-++|....+...+.. ..+.++|..+.-.+
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k~~eHge--slAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKKFPEHGE--SLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHhCCccch--hHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHH
Confidence 344455555 457788888888888887766444 44444444556788888888887777644 45667888888777
Q ss_pred HhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 006630 220 CKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299 (638)
Q Consensus 220 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 299 (638)
....++++|++.|.......+.|...|.-+.-.-.+.++++.....-.++.+.. +-....|..+..++.-.|+...|..
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 778889999999988877777788888888877788888888777777777653 3345567888888888889999999
Q ss_pred HHHHHHHcC-CCCCHHhHHHHH------HHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHH
Q 006630 300 LLKEMRRKG-CDPNANSYTVLI------QALCRMEKMEEANRAFVEMERSGCEADVVT-YTTLISGFCKSRKIDRCYEIL 371 (638)
Q Consensus 300 ~~~~~~~~g-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~ 371 (638)
++++..+.. -.|+...|.-.. ....+.|.+++|.+.+..-... ..|-.. -.+-...+.+.++.++|..++
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 988887764 245555553332 2345677788887777665433 222222 234456677888999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHH-HHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHCC
Q 006630 372 DSMIQRGILPNQLTYLHIMLAHE-KKEELEECV-ELMGEMRKIGCVPDVSNYNVV-IRLACKLGELKEAVNVWNEMEAAS 448 (638)
Q Consensus 372 ~~m~~~~~~p~~~t~~~ll~~~~-~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~ 448 (638)
..++.. .||..-|.-.+..+. +-.+.-++. .+|....+. .|....-..+ +....-..-.+..-+++..+..+|
T Consensus 243 ~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 243 RRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 988875 456555554444333 333333333 555555442 1111110000 111111222333445556667777
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCC--------CCCcHH--HHHHHHHHHHHcCCHHHHHHHHH
Q 006630 449 LSPGTDSFVVMVHGFLGQGCLIE----ACEYFKEMVGRGLL--------SAPQYG--TLKALLNSLLRAQKVEMAKDVWS 514 (638)
Q Consensus 449 ~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~--------~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~ 514 (638)
+++ .+..+...|-.-....- +..+...+-..+.. .+|... |+-.+...+-+.|+++.|..+.+
T Consensus 319 ~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 319 VPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred CCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 654 33334433332221110 11122222112111 135444 33445667778899999999988
Q ss_pred HHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc
Q 006630 515 CIVTKGCELNVY-AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAER 593 (638)
Q Consensus 515 ~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 593 (638)
.++.+ .|+.+ -|-.-.+.+..+|.+++|..++++..+.+ .||..+-..-..-..+....++|.++..+..+.+.+.
T Consensus 396 ~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~ 472 (700)
T KOG1156|consen 396 LAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGA 472 (700)
T ss_pred HHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccch
Confidence 88875 56543 45555678888899999999988887655 4555444455555567788888888887776655411
Q ss_pred ccc--------c-----chhhhhhhhhhHHHHHhhhhhhh
Q 006630 594 QIT--------F-----KMYKRRGERDLKEKAKKQVDGRK 620 (638)
Q Consensus 594 ~~~--------~-----~~y~~~g~~~~A~~~~~~~~~~~ 620 (638)
..- + ..|.++|+|-+|.+=|..+..-.
T Consensus 473 ~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~ 512 (700)
T KOG1156|consen 473 VNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHY 512 (700)
T ss_pred hhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHH
Confidence 111 1 47888899988888776655433
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.47 E-value=2.7e-09 Score=101.42 Aligned_cols=252 Identities=14% Similarity=0.100 Sum_probs=136.1
Q ss_pred hCCCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 006630 221 KNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299 (638)
Q Consensus 221 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 299 (638)
..|+.+.+-.++.+..+. ..++....-+........|+.+.|..-.+++.+.+ +-++........+|.+.|++.....
T Consensus 130 qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~ 208 (400)
T COG3071 130 QRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLA 208 (400)
T ss_pred hcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHH
Confidence 344444444444444332 22233333344444444444444444444444433 2233344444444444444444444
Q ss_pred HHHHHHHcCCCCCH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006630 300 LLKEMRRKGCDPNA-------NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372 (638)
Q Consensus 300 ~~~~~~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 372 (638)
++..+.+.|.-.|. .+|..+++-....+..+.-...+++.... .+.++..-.+++.-+.+.|+.++|.++..
T Consensus 209 ~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~ 287 (400)
T COG3071 209 ILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIE 287 (400)
T ss_pred HHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHH
Confidence 44444444433221 34455555555444444444455544332 12344445556666667777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 006630 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452 (638)
Q Consensus 373 ~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 452 (638)
+..+++..|.. ...-.+.+.++.+.-.+..+...+.. +.++..+.+|...|.+.+.+.+|...|+...+. .|+
T Consensus 288 ~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s 360 (400)
T COG3071 288 DALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPS 360 (400)
T ss_pred HHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCC
Confidence 76666555441 12223445566666666655554432 344466777777777777777777777766654 477
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006630 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVG 481 (638)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (638)
..+|+.+..+|.+.|+..+|.+.+++...
T Consensus 361 ~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 361 ASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 77777777777777777777777777654
No 58
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.44 E-value=8.7e-10 Score=114.06 Aligned_cols=502 Identities=12% Similarity=0.092 Sum_probs=277.6
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHhccCchhHHH-HHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 006630 91 LELALQHSGVVLRPGLTERVINRCGDAGNLGYR-YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKP 169 (638)
Q Consensus 91 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 169 (638)
+...++..|+.|+-.++.+++..||.-|+...+ .|-|... ...+..-.+++.++....+.++.+. |
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaatif~fm~~-ksLpv~e~vf~~lv~sh~~And~En------------p 78 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAATIFPFMEI-KSLPVREGVFRGLVASHKEANDAEN------------P 78 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCccccchhhhhc-ccccccchhHHHHHhcccccccccC------------C
Confidence 444556677777766677777777776665332 2333322 2334455667777776666665543 3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH---HHHHHHhc----hhCCCCCCHHHH--------------HHHHHHHHhCCCHHHH
Q 006630 170 QLITTEVFVILMRRFASARMVKK---AIEVLDEM----PKYGCEPDEFVF--------------GCLLDALCKNSSVKEA 228 (638)
Q Consensus 170 ~~~~~~~~~~li~~~~~~~~~~~---A~~~~~~m----~~~g~~~~~~~~--------------~~li~~~~~~g~~~~A 228 (638)
..|.+.+|..|..+|...|++.. ..+.+..+ ...|+..-..-+ ...+....-.|.++.+
T Consensus 79 kep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 79 KEPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred CCCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 34677788888888888887544 22212111 112221111111 2233334445666666
Q ss_pred HHHHHHHhcc--CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 006630 229 AKLFDEMRER--FKPSLRHFTSLLYGWCKEGK-LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305 (638)
Q Consensus 229 ~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 305 (638)
++++..++.. ..|..+ .+.-...... +++-..+.....+ .|+..+|..++..-...|+.+.|..++.+|.
T Consensus 159 lkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 6666555432 111111 1222222222 2222222222222 4888888888888888888999999999998
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-------------------
Q 006630 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR------------------- 366 (638)
Q Consensus 306 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~------------------- 366 (638)
+.|++.+..-|-.|+-+ .++..-+..++..|.+.|+.|+..|+...+-.+..+|....
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa 308 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAA 308 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHH
Confidence 88888887766666655 67888888888888888888888887665555544332111
Q ss_pred -----HHHHHHH------------HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C-CCCHHHHHHHHH
Q 006630 367 -----CYEILDS------------MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG--C-VPDVSNYNVVIR 426 (638)
Q Consensus 367 -----A~~~~~~------------m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~-~~~~~~~~~li~ 426 (638)
|.+.++. ..-.|+......|... .-...+|.-++..++-..+.... . ..++..|..++.
T Consensus 309 ~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c-~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lr 387 (1088)
T KOG4318|consen 309 CRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMC-EKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLR 387 (1088)
T ss_pred hcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHH-HHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHH
Confidence 1111111 0001222122222221 12223455555555555443211 1 112333433333
Q ss_pred HHHHcCC----------------------HHHHHHHHHHHHH----------------CCCCC-------CHHHHHHHHH
Q 006630 427 LACKLGE----------------------LKEAVNVWNEMEA----------------ASLSP-------GTDSFVVMVH 461 (638)
Q Consensus 427 ~~~~~g~----------------------~~~A~~~~~~m~~----------------~~~~p-------~~~~~~~li~ 461 (638)
-|.+.-+ ..+..+....... +...| --..-+.++.
T Consensus 388 qyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l 467 (1088)
T KOG4318|consen 388 QYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHL 467 (1088)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHH
Confidence 3332111 1111111111100 00000 0012233444
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccC
Q 006630 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK--GCELNVYAWTIWIHSLFSNG 539 (638)
Q Consensus 462 ~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g 539 (638)
.++..-+..+++..-+.....-+ + ..|..|++-+....+++.|..+.++.... .+..|..-+..+.+.+.+.+
T Consensus 468 ~l~se~n~lK~l~~~ekye~~lf---~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~ 542 (1088)
T KOG4318|consen 468 TLNSEYNKLKILCDEEKYEDLLF---A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLA 542 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhH
Confidence 45554444555433322222211 2 46778899999999999999999888654 23445667888999999999
Q ss_pred CHHHHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc-ccccchhhhhhhhhhHHHHHhhh
Q 006630 540 HVKEACSYCLDMMDAD-VMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAER-QITFKMYKRRGERDLKEKAKKQV 616 (638)
Q Consensus 540 ~~~~A~~~~~~m~~~~-~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~y~~~g~~~~A~~~~~~~ 616 (638)
...++..++.++.+.- ..|+ ..++-.+++.....|+.+.-++.++-+..++-.. ..++.+.-+.++...|.++.+..
T Consensus 543 ~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~ 622 (1088)
T KOG4318|consen 543 ILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPE 622 (1088)
T ss_pred HHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHH
Confidence 9999999999987632 2333 4556777888888899998888888887776544 33456667777777777776665
Q ss_pred hhhhh
Q 006630 617 DGRKR 621 (638)
Q Consensus 617 ~~~~~ 621 (638)
..+.+
T Consensus 623 ~qkyk 627 (1088)
T KOG4318|consen 623 EQKYK 627 (1088)
T ss_pred HHHhc
Confidence 55554
No 59
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.41 E-value=1e-07 Score=95.69 Aligned_cols=436 Identities=11% Similarity=0.110 Sum_probs=250.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCC------CCCCHHHHH
Q 006630 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYG------CEPDEFVFG 213 (638)
Q Consensus 140 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g------~~~~~~~~~ 213 (638)
.|...+......+-++-+..+|++..+..|. .-.--|..++..++.++|.+.+...+... .+.+...|.
T Consensus 140 IW~lyl~Fv~~~~lPets~rvyrRYLk~~P~-----~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~ 214 (835)
T KOG2047|consen 140 IWDLYLKFVESHGLPETSIRVYRRYLKVAPE-----AREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWL 214 (835)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHHhcCHH-----HHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHH
Confidence 4555666666666666777777766655432 23345556666777777776666554221 133344555
Q ss_pred HHHHHHHhCCCHH---HHHHHHHHHhccCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006630 214 CLLDALCKNSSVK---EAAKLFDEMRERFKPS-LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA 289 (638)
Q Consensus 214 ~li~~~~~~g~~~---~A~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 289 (638)
-+-+..++.-+.- ....+++.+..+++.. ...|++|...|.+.|.++.|.++|++....- ....-|..+.++|+
T Consensus 215 elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 215 ELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYA 292 (835)
T ss_pred HHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHH
Confidence 5555554432221 2233444444443322 2457777777777777777777777655321 11111111111111
Q ss_pred ------------------------------------------------------------------HcCCHhHHHHHHHH
Q 006630 290 ------------------------------------------------------------------QMGKMTDAFELLKE 303 (638)
Q Consensus 290 ------------------------------------------------------------------~~g~~~~a~~~~~~ 303 (638)
..|+..+-...+.+
T Consensus 293 ~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyte 372 (835)
T KOG2047|consen 293 QFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTE 372 (835)
T ss_pred HHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHH
Confidence 12333344444444
Q ss_pred HHHcCCCCC------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006630 304 MRRKGCDPN------ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD---VVTYTTLISGFCKSRKIDRCYEILDSM 374 (638)
Q Consensus 304 ~~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m 374 (638)
..+. +.|. ...|..+.+.|-..|+++.|..+|++..+...+-- ..+|-.-...=.+..+++.|+++++..
T Consensus 373 Av~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A 451 (835)
T KOG2047|consen 373 AVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRA 451 (835)
T ss_pred HHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 4433 2221 23456778889999999999999999886542211 245555556666788899999988876
Q ss_pred HHCC----------CCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006630 375 IQRG----------ILP-------NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437 (638)
Q Consensus 375 ~~~~----------~~p-------~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 437 (638)
..-. ..| +...|...++..-..|-++....+++.+.+..+.....+.| ....+-...-++++
T Consensus 452 ~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfees 530 (835)
T KOG2047|consen 452 THVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEES 530 (835)
T ss_pred hcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHH
Confidence 5321 111 22344555555566788899999999998765433322222 22234456678899
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHH--HHHcCCHHHHHH
Q 006630 438 VNVWNEMEAASLSPGT-DSFVVMVHGFLG---QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS--LLRAQKVEMAKD 511 (638)
Q Consensus 438 ~~~~~~m~~~~~~p~~-~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~--~~~~g~~~~A~~ 511 (638)
.++|++-...--.|+. ..|+..+.-+.+ .-+++.|..+|++.++ +. +|...-+.-|+-+ --+.|....|+.
T Consensus 531 Fk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~C--pp~~aKtiyLlYA~lEEe~GLar~ams 607 (835)
T KOG2047|consen 531 FKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GC--PPEHAKTIYLLYAKLEEEHGLARHAMS 607 (835)
T ss_pred HHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cC--CHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999876655434554 567766655543 3468999999999998 54 4544333223221 124588888999
Q ss_pred HHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhhcCHHHHHHHHHHH
Q 006630 512 VWSCIVTKGCELN--VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT---FAKLMRGLKKLYNRQIAAEITEKV 586 (638)
Q Consensus 512 ~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t---~~~ll~~~~~~g~~~~A~~~~~~~ 586 (638)
+++++... +++. ...||..|.--...=-+.....+|++.++. -||... .......-.+.|..+.|+.++...
T Consensus 608 iyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~ 684 (835)
T KOG2047|consen 608 IYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHG 684 (835)
T ss_pred HHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 99887654 3332 345666664333222233445566666654 455433 223333445678888888888777
Q ss_pred HHHH
Q 006630 587 RKMA 590 (638)
Q Consensus 587 ~~~~ 590 (638)
-+.-
T Consensus 685 sq~~ 688 (835)
T KOG2047|consen 685 SQIC 688 (835)
T ss_pred hhcC
Confidence 6653
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.40 E-value=4.4e-10 Score=120.14 Aligned_cols=266 Identities=8% Similarity=0.021 Sum_probs=183.8
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHH---------hCCCHHHHHHHHHHHhcc
Q 006630 173 TTEVFVILMRRFAS-----ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALC---------KNSSVKEAAKLFDEMRER 238 (638)
Q Consensus 173 ~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~~ 238 (638)
+...|...+++... .+.+++|++.|++..+.. +.+...|..+..+|. ..+++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 44555555554321 234678999999988763 234456666655443 234578999999999888
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHH
Q 006630 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318 (638)
Q Consensus 239 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 318 (638)
.|.+...|..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.... +...+..
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~ 411 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGIT 411 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHH
Confidence 88899999999999999999999999999998875 445677888888999999999999999999887433 2223334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 006630 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN-QLTYLHIMLAHEKKE 397 (638)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g 397 (638)
++..+...|++++|...++++.....+-+...+..+...+...|+.++|...+.++... .|+ ....+.+...+...|
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH
Confidence 44456678999999999998876532224556777888888999999999999887654 333 334444555666666
Q ss_pred CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006630 398 ELEECVELMGEMRKI-GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448 (638)
Q Consensus 398 ~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (638)
+.+...++.+.+. ...+....+ +-..|.-.|+.+.+... +++.+.+
T Consensus 490 --~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 490 --ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred --HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4777767666543 112222222 33345556777776666 7777654
No 61
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=3.2e-10 Score=107.57 Aligned_cols=200 Identities=15% Similarity=0.111 Sum_probs=109.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006630 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464 (638)
Q Consensus 385 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 464 (638)
.+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 34444445555555555555555554432 2334455555555666666666666666655543 334455555566666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 006630 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544 (638)
Q Consensus 465 ~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 544 (638)
..|++++|.+.|++....... +.....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLY-PQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HcccHHHHHHHHHHHHhcccc-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666543210 1223344445555666666666666666665542 12344555666666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 006630 545 CSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589 (638)
Q Consensus 545 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 589 (638)
..+++++.+. ...+...+..+...+...|+.+.|..+.+.+.+.
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6666666554 1233444555555556666666666666655544
No 62
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=5.7e-09 Score=97.11 Aligned_cols=415 Identities=14% Similarity=0.130 Sum_probs=267.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCC
Q 006630 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNS 223 (638)
Q Consensus 144 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 223 (638)
+...+.+.|++++|...|.-+...+ .++...+..|.-++.-.|.+.+|..+-.... .++..-..|+..--+.|
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhC
Confidence 3456778999999999998887653 3566677777777778899999998877654 33444555666667778
Q ss_pred CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHcCCHhHHHHHHH
Q 006630 224 SVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL-SGYAQMGKMTDAFELLK 302 (638)
Q Consensus 224 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~ 302 (638)
+-++-..+...+... ..---+|.......-.+++|++++.+.... .|+-...|.-+ -+|.+..-++-+.++++
T Consensus 136 dEk~~~~fh~~LqD~----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~ 209 (557)
T KOG3785|consen 136 DEKRILTFHSSLQDT----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLK 209 (557)
T ss_pred cHHHHHHHHHHHhhh----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHH
Confidence 877777666666542 233445555555566789999999999876 45655655544 46677888888999988
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHC
Q 006630 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS-----RKIDRCYEILDSMIQR 377 (638)
Q Consensus 303 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~ 377 (638)
-..+. ++.++...|.......+.=.-..|..-...+.+.+-.. | -.+.-+++. .+.+.|++++-.+.+.
T Consensus 210 vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~ 283 (557)
T KOG3785|consen 210 VYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH 283 (557)
T ss_pred HHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh
Confidence 87765 34344555555444444333333444444444432111 1 123333443 3567788887776653
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCC
Q 006630 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG-------ELKEAVNVWNEMEAASLS 450 (638)
Q Consensus 378 ~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~ 450 (638)
.| ..-..++-.|.+.+++.+|..+.+.+.- ..|-......++ ++..| .+.-|.+.|+..-+.+..
T Consensus 284 --IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv--~aalGQe~gSreHlKiAqqffqlVG~Sa~e 355 (557)
T KOG3785|consen 284 --IP--EARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVV--FAALGQETGSREHLKIAQQFFQLVGESALE 355 (557)
T ss_pred --Ch--HhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHH--HHHhhhhcCcHHHHHHHHHHHHHhcccccc
Confidence 22 2344566678889999999888766541 122222222222 22222 356677788777655444
Q ss_pred CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006630 451 PGT-DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529 (638)
Q Consensus 451 p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 529 (638)
-|. .--.++...+.-..++++.+.++.....--. .|......+..+.+..|++.+|+++|-.+....++ |..+|.
T Consensus 356 cDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~---NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~ 431 (557)
T KOG3785|consen 356 CDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFT---NDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYK 431 (557)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHH
Confidence 333 2344566666667788999888887766542 33333345778889999999999999877654444 555554
Q ss_pred -HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 530 -IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT-FAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 530 -~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
.+..+|.++|+++.|+.++-++ .-..+..+ +..+.+.|.+.+.+=-|.+.+..+-.++|.
T Consensus 432 s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 432 SMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 4568899999999998875443 32233433 445566888889988888888888888875
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=1.3e-10 Score=110.24 Aligned_cols=199 Identities=11% Similarity=0.051 Sum_probs=166.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHH
Q 006630 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495 (638)
Q Consensus 416 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ 495 (638)
.....+..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~ 104 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN---PNNGDVLNN 104 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHHH
Confidence 345677888889999999999999999998765 5567888899999999999999999999999876 355667778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhc
Q 006630 496 LLNSLLRAQKVEMAKDVWSCIVTKGC-ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLY 574 (638)
Q Consensus 496 ll~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 574 (638)
+...+...|++++|.+.++++..... ......+..+..++...|++++|...+++.++.. ..+...+..+...+...|
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcC
Confidence 88899999999999999999987522 2245567788899999999999999999998653 234567888889999999
Q ss_pred CHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhHHHHHhhhhhh
Q 006630 575 NRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLKEKAKKQVDGR 619 (638)
Q Consensus 575 ~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~~~~~~~~~~ 619 (638)
++++|...++++++..|.++..+ .++...|++++|....+.+...
T Consensus 184 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 184 QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999999999977765543 6788899999999988876543
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.38 E-value=7.4e-10 Score=118.42 Aligned_cols=239 Identities=9% Similarity=-0.025 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006630 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHE---------KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434 (638)
Q Consensus 364 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~---------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 434 (638)
.++|+.+|++..+.... +...+..+..++. ..+++++|...+++..+.+ +.+...+..+...+...|++
T Consensus 277 ~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 277 LQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence 45666666666654322 2334443333322 2244778888888887764 55667777777778888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006630 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514 (638)
Q Consensus 435 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 514 (638)
++|...|++..+.+ +.+...|..+...+...|++++|+..++++++... .+...+..++..+...|++++|...++
T Consensus 355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P---~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDP---TRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---CChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 88888888888775 55567788888888888888888888888888762 222223334445666788888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhhcCHHHHHHHHHHHHHHH---
Q 006630 515 CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT-FAKLMRGLKKLYNRQIAAEITEKVRKMA--- 590 (638)
Q Consensus 515 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~g~~~~A~~~~~~~~~~~--- 590 (638)
++.....+-+...+..+..+|...|++++|...++++... .|+..+ ...+...+...| +.|...++++++..
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 8776522223445667777888888888888888776543 555544 334444555555 46666666666544
Q ss_pred Hhccccc-chhhhhhhhhhHHHH
Q 006630 591 AERQITF-KMYKRRGERDLKEKA 612 (638)
Q Consensus 591 p~~~~~~-~~y~~~g~~~~A~~~ 612 (638)
|.++... .+|.-.|+-+.+...
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~ 529 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW 529 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH
Confidence 3333332 577777777777666
No 65
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.37 E-value=1.3e-08 Score=104.45 Aligned_cols=440 Identities=15% Similarity=0.083 Sum_probs=284.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCC-CHHHHH
Q 006630 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEP-DEFVFG 213 (638)
Q Consensus 135 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~-~~~~~~ 213 (638)
.-+...|..|.-.+.++|+++.+.+.|++..... ....+.|..+...+...|.-..|+.+++.-....-.| |...+-
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~--~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS--FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3577899999999999999999999999887542 2366789999999999999999999998765442224 344444
Q ss_pred HHHHHHHh-CCCHHHHHHHHHHHhc-----cCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCC
Q 006630 214 CLLDALCK-NSSVKEAAKLFDEMRE-----RFKPSLRHFTSLLYGWCKE-----------GKLVEAKYVLVQMKDAGFEP 276 (638)
Q Consensus 214 ~li~~~~~-~g~~~~A~~~~~~~~~-----~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~p 276 (638)
..-..|.+ .+.+++++.+-.++.. ...-....|..+.-+|... -...++++.+++..+.+. .
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~-~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP-T 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-C
Confidence 33444443 3666666666555433 1111233444444444322 235688999999988763 2
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006630 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356 (638)
Q Consensus 277 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 356 (638)
|+...-.+.--|+..++++.|.+...+..+.+-..+...|..|.-.+...+++.+|+.+.+...+.- ..|......-+.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhh
Confidence 3333333444577888999999999999998667788999999999999999999999999876541 112222222233
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHcCCH
Q 006630 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK--IGCVPDVSNYNVVIRLACKLGEL 434 (638)
Q Consensus 357 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~ 434 (638)
.-...++.++++.....+..- --+...+. ..++-....+....+.- ........++..+...... +.
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~--we~~~~~q-------~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~ 624 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLAL--WEAEYGVQ-------QTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QL 624 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHH--HHhhhhHh-------hhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hh
Confidence 334478888888887777642 00000111 11111112222222211 0111122333333222211 11
Q ss_pred HHHHHHHHHHHHCCCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCH
Q 006630 435 KEAVNVWNEMEAASLS--PG------TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506 (638)
Q Consensus 435 ~~A~~~~~~m~~~~~~--p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~ 506 (638)
+.+..-.. ++..-+. |+ ...|......+...+..++|...+.+..... +-....|.-....+...|+.
T Consensus 625 ~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~---~l~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 625 KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID---PLSASVYYLRGLLLEVKGQL 700 (799)
T ss_pred hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc---hhhHHHHHHhhHHHHHHHhh
Confidence 11100000 2211111 22 2356666777888899999988888887665 24455666666677788999
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHH
Q 006630 507 EMAKDVWSCIVTKGCEL-NVYAWTIWIHSLFSNGHVKEACS--YCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEIT 583 (638)
Q Consensus 507 ~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~ 583 (638)
++|.+.|...... .| ++.+.+++..++.+.|+..-|.. ++..+++.+ .-++..|..+...+.+.|+.+.|.+.+
T Consensus 701 ~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 701 EEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred HHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHH
Confidence 9999999988876 34 46678899999999998777777 888888764 446888999999999999999999999
Q ss_pred HHHHHHHHhcccc
Q 006630 584 EKVRKMAAERQIT 596 (638)
Q Consensus 584 ~~~~~~~p~~~~~ 596 (638)
..++++++.+|..
T Consensus 778 ~aa~qLe~S~PV~ 790 (799)
T KOG4162|consen 778 QAALQLEESNPVL 790 (799)
T ss_pred HHHHhhccCCCcc
Confidence 9999999988864
No 66
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.37 E-value=1.7e-08 Score=104.35 Aligned_cols=290 Identities=14% Similarity=0.111 Sum_probs=168.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHH-HHHHHHh--
Q 006630 145 IKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGC-LLDALCK-- 221 (638)
Q Consensus 145 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~-li~~~~~-- 221 (638)
..++...|++++|++.++.-...-. ............+.+.|+.++|..++..+++.+ |+...|.. |..+..-
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~--Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQIL--DKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence 3556777888888888876544321 233455666777778888888888888888774 55544443 3333311
Q ss_pred ---CCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHH
Q 006630 222 ---NSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLV-EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297 (638)
Q Consensus 222 ---~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 297 (638)
..+.+....+++++...+|.....-..-+.. .....+. .+...+..+...|+++ +|+.+-..|.......-.
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~-~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDF-LEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccchhHhhccc-CCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence 1246667777777766654322222222222 1212232 3455566667777543 455555555544444455
Q ss_pred HHHHHHHHHc----C----------CCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 006630 298 FELLKEMRRK----G----------CDPNA--NSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD-VVTYTTLISGFCK 360 (638)
Q Consensus 298 ~~~~~~~~~~----g----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~ 360 (638)
.+++...... + -+|.. .++..+...|-..|++++|++++++.++. .|+ +..|..-...|-+
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh 240 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHH
Confidence 5555554332 1 12233 23455566677777777777777777766 444 4556666677777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HH--HHHHHHHHHcC
Q 006630 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS------NY--NVVIRLACKLG 432 (638)
Q Consensus 361 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~--~~li~~~~~~g 432 (638)
.|++.+|.+.++........ |...=+-.+..+.+.|++++|.+++....+.+..|... .| .....+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777777777665433 55555556666677777777777777766554322111 11 23345667777
Q ss_pred CHHHHHHHHHHHH
Q 006630 433 ELKEAVNVWNEME 445 (638)
Q Consensus 433 ~~~~A~~~~~~m~ 445 (638)
++..|++.|..+.
T Consensus 320 ~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 320 DYGLALKRFHAVL 332 (517)
T ss_pred hHHHHHHHHHHHH
Confidence 7777766665554
No 67
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.37 E-value=1.9e-07 Score=94.23 Aligned_cols=422 Identities=10% Similarity=0.047 Sum_probs=249.5
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHH
Q 006630 147 SLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226 (638)
Q Consensus 147 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 226 (638)
.+...|+-++|........+.++ -+...|..+.-.+-...++++|+..|....+.+ +.|...+.-|--.-++.++++
T Consensus 50 ~L~~lg~~~ea~~~vr~glr~d~--~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~ 126 (700)
T KOG1156|consen 50 TLNCLGKKEEAYELVRLGLRNDL--KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYE 126 (700)
T ss_pred hhhcccchHHHHHHHHHHhccCc--ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhh
Confidence 34566778888887777666543 355566666666666778888888888887765 456667766666666677777
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHHcCCHhHHHH
Q 006630 227 EAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAG-FEPDIVVYNNLL------SGYAQMGKMTDAFE 299 (638)
Q Consensus 227 ~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll------~~~~~~g~~~~a~~ 299 (638)
.....-....+..+.....|...+.++--.|+...|..++++..+.. -.|+...|.-.. ....+.|..+.|.+
T Consensus 127 ~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 127 GYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 77666666666556677888888888888899999988888887654 245655554332 23455677777777
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCCHHHHH-HHHHHHHHC
Q 006630 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS-GFCKSRKIDRCY-EILDSMIQR 377 (638)
Q Consensus 300 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~-~~~~~g~~~~A~-~~~~~m~~~ 377 (638)
.+..-... +......-..-.+.+.+.+++++|..++..+... .||...|+.... ++.+-.+.-+++ .+|....+.
T Consensus 207 ~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 207 HLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred HHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 76655443 2212333345566788889999999999998877 577666665444 333344444444 555555443
Q ss_pred CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHHHHHHCC----
Q 006630 378 GILPNQLTYLHI-MLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN----VWNEMEAAS---- 448 (638)
Q Consensus 378 ~~~p~~~t~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~----~~~~m~~~~---- 448 (638)
- |....-..+ +.......-.+..-+++....+.|+++-. ..+...|-.-...+--.+ +...+...|
T Consensus 284 y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf---~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~ 358 (700)
T KOG1156|consen 284 Y--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVF---KDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNF 358 (700)
T ss_pred C--cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchh---hhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCc
Confidence 1 111110000 11111122233344555666666655433 233332322111111111 111111110
Q ss_pred ------CCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006630 449 ------LSPGTDSFV--VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ-YGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519 (638)
Q Consensus 449 ------~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 519 (638)
-+|....|. .++..|-..|+++.|..+++..++.. |+ ...|..=.+.+.+.|++++|..++++..+.
T Consensus 359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT----PTliEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT----PTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC----chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 145555444 56777888888888888888887764 54 334444456778888888888888888776
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH--------HHHHH--HHHHHhhcCHHHHHHHHHHH
Q 006630 520 GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPD--------TFAKL--MRGLKKLYNRQIAAEITEKV 586 (638)
Q Consensus 520 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--------t~~~l--l~~~~~~g~~~~A~~~~~~~ 586 (638)
+ .||...=.--+.-..++.+.++|.+++....+.|. +.. .|-.+ ..+|.++|++..|.+=+..+
T Consensus 435 D-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 435 D-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred c-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 3 33443333445556677888888888777766653 221 12222 33566666666665444433
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=1.7e-10 Score=105.97 Aligned_cols=242 Identities=11% Similarity=0.103 Sum_probs=197.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006630 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426 (638)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 426 (638)
|-.--+.|..+|.+.|.+.+|.+.|+.-.+. .|-+.||..+-.+|.+..+.+.|+.++.+-.+. ++.|+.....+.+
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHH
Confidence 3344467888899999999999998888775 455668888888999999999999999888775 2444444455667
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCH
Q 006630 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506 (638)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~ 506 (638)
.+-..++.++|.++|+...+.. +.+++...++..+|.-.++++-|+.+|+++++.|+ .+...|+.+.-+|.-.+++
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~---~speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA---QSPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC---CChHHHhhHHHHHHhhcch
Confidence 7888899999999999998876 67778888888999999999999999999999996 6777888998899999999
Q ss_pred HHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHH
Q 006630 507 EMAKDVWSCIVTKGCELN--VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584 (638)
Q Consensus 507 ~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~ 584 (638)
|.+..-|.++....-.|+ ...|-.+.......|++..|.+.|+-.+..+ ..+...+++|.-.-.+.|+.++|+.++.
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 999999998877633344 5678888888889999999999998887653 2345678888888888899999999999
Q ss_pred HHHHHHHhcccc
Q 006630 585 KVRKMAAERQIT 596 (638)
Q Consensus 585 ~~~~~~p~~~~~ 596 (638)
-+....|+-.+.
T Consensus 454 ~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 454 AAKSVMPDMAEV 465 (478)
T ss_pred HhhhhCcccccc
Confidence 999888875443
No 69
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=1e-07 Score=94.99 Aligned_cols=148 Identities=14% Similarity=0.162 Sum_probs=101.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCCCCcHHHHHHHHHHHHHcC
Q 006630 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK--------EMVGRGLLSAPQYGTLKALLNSLLRAQ 504 (638)
Q Consensus 433 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~~~~~~p~~~~~~~ll~~~~~~g 504 (638)
...+|..++...-+..-.........++.....+|+++.|++++. .+.+.+. .| .+...+...+.+.+
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P--~~V~aiv~l~~~~~ 431 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LP--GTVGAIVALYYKIK 431 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--Ch--hHHHHHHHHHHhcc
Confidence 466777777777665422224566677788888999999999988 4444442 24 35556667788888
Q ss_pred CHHHHHHHHHHHHHc--CCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHH
Q 006630 505 KVEMAKDVWSCIVTK--GCELNVY----AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQI 578 (638)
Q Consensus 505 ~~~~A~~~~~~~~~~--~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 578 (638)
+-+.|..++.+++.. .-.+... .|.-.+..-.+.|+.++|..+++++.+.. .+|..+...++.+|+. =|.+.
T Consensus 432 ~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~-~d~ek 509 (652)
T KOG2376|consen 432 DNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYAR-LDPEK 509 (652)
T ss_pred CCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHh-cCHHH
Confidence 888888888877653 1122222 33334444567799999999999998743 6778888888888876 47788
Q ss_pred HHHHHHHH
Q 006630 579 AAEITEKV 586 (638)
Q Consensus 579 A~~~~~~~ 586 (638)
|+.+-+++
T Consensus 510 a~~l~k~L 517 (652)
T KOG2376|consen 510 AESLSKKL 517 (652)
T ss_pred HHHHhhcC
Confidence 88776544
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=8e-11 Score=108.07 Aligned_cols=235 Identities=8% Similarity=-0.020 Sum_probs=200.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006630 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVM 459 (638)
Q Consensus 380 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 459 (638)
..|...-+-+..+|.+.|-+.+|...++...+. .|-+.||-.|-+.|.+..+++.|+.+|.+-.+.- +-|+....-+
T Consensus 220 ~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ 296 (478)
T KOG1129|consen 220 TLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQ 296 (478)
T ss_pred hHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-Cchhhhhhhh
Confidence 334555567888999999999999999988876 5777788889999999999999999999988763 4455455567
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 006630 460 VHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539 (638)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 539 (638)
...+...++.++|.++|+...+.. +.+......+...|.-.++.+.|.++|+++++.|.. +...|+.+.-+|...+
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~---~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaq 372 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLH---PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQ 372 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcC---CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhc
Confidence 788888999999999999999876 456667777778888999999999999999999876 8889999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccccc----hhhhhhhhhhHHHHH
Q 006630 540 HVKEACSYCLDMMDADVMPQ--PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFK----MYKRRGERDLKEKAK 613 (638)
Q Consensus 540 ~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~----~y~~~g~~~~A~~~~ 613 (638)
+++-++.-|++.+..--.|+ ..+|.++.......||+..|.+.++-++..+|++...++ +-.+.|+.++|..++
T Consensus 373 Q~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll 452 (478)
T KOG1129|consen 373 QIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLL 452 (478)
T ss_pred chhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHH
Confidence 99999999999987544565 567999999999999999999999999999999999984 446889999999999
Q ss_pred hhhhhhhh
Q 006630 614 KQVDGRKR 621 (638)
Q Consensus 614 ~~~~~~~~ 621 (638)
.......+
T Consensus 453 ~~A~s~~P 460 (478)
T KOG1129|consen 453 NAAKSVMP 460 (478)
T ss_pred HHhhhhCc
Confidence 88766544
No 71
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.31 E-value=1.7e-10 Score=119.22 Aligned_cols=249 Identities=17% Similarity=0.227 Sum_probs=143.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006630 265 VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344 (638)
Q Consensus 265 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 344 (638)
++-.+...|+.|+.+||..+|.-||..|+.+.|- +|..|.-...+.+..+++.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4455566666777777777777777777776666 6666666656666666666666666666665554
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HH-------HCC-----------------CCCCHHHHHHHHHHHHhcCCH
Q 006630 345 EADVVTYTTLISGFCKSRKIDRCYEILDS-MI-------QRG-----------------ILPNQLTYLHIMLAHEKKEEL 399 (638)
Q Consensus 345 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~~-----------------~~p~~~t~~~ll~~~~~~g~~ 399 (638)
.|...+|..|..+|...||... ++..++ |. ..| ..||..+ .+.-..-.|.+
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglw 155 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLW 155 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHH
Confidence 4566667777777777666543 222221 11 111 2222222 12222233445
Q ss_pred HHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006630 400 EECVELMGEMRKIG-CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478 (638)
Q Consensus 400 ~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 478 (638)
+.+.+++..+.... ..|..+ +++-+.. .....+++.+......-.|+..+|..++..-...|+.+.|..++.+
T Consensus 156 aqllkll~~~Pvsa~~~p~~v----fLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 156 AQLLKLLAKVPVSAWNAPFQV----FLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHHHhhCCcccccchHHH----HHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 55555544432221 011111 1222221 1223333333333221147888888888888888888888888888
Q ss_pred HHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006630 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540 (638)
Q Consensus 479 m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 540 (638)
|.+.|+ +.+..-|..|+-+ .++..-++.++..|...|+.|+..|+.-.+-.+..+|.
T Consensus 230 mke~gf--pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 230 MKEKGF--PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHcCC--Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 888887 3444444455532 77777788888888888888888888877777777665
No 72
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.28 E-value=1.4e-09 Score=110.83 Aligned_cols=244 Identities=15% Similarity=0.098 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHC-----C--C
Q 006630 349 VTYTTLISGFCKSRKIDRCYEILDSMIQR-----G-ILPNQLTY-LHIMLAHEKKEELEECVELMGEMRKI-----G--C 414 (638)
Q Consensus 349 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~-----~--~ 414 (638)
.+...+...|...|++++|..+++...+. | ..|...+. +.+...|...+++++|..+|+++... | .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44555777788888888888888776653 2 12222222 23555667777777777777776541 2 1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C
Q 006630 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA-----S-LSPGT-DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL-S 486 (638)
Q Consensus 415 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~ 486 (638)
+.-..+++.|..+|.+.|++++|...++...+. + ..|.+ ..++.++..++..+++++|..++....+.-.. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 112344555556677777777777777765421 1 11222 23445566666677777777777766542110 0
Q ss_pred CCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC--CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHh--
Q 006630 487 APQ----YGTLKALLNSLLRAQKVEMAKDVWSCIVTK----GC--ELN-VYAWTIWIHSLFSNGHVKEACSYCLDMMD-- 553 (638)
Q Consensus 487 ~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~--~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 553 (638)
.++ ..+++.|...|.+.|++++|.++|++++.. +. .+. ...++.|...|.+.+++++|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 122 345666777777777777777777776654 11 111 33456666677777777777777766432
Q ss_pred --CCC-CCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 554 --ADV-MPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 554 --~~~-~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
.|. .|+ ..+|..|..+|...|+++.|+++.+++....-+
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~ 482 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQ 482 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 221 233 234677777777777777777777777655433
No 73
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=1.2e-07 Score=94.66 Aligned_cols=422 Identities=11% Similarity=0.052 Sum_probs=250.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHH--HHHHHH
Q 006630 143 ALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGC--LLDALC 220 (638)
Q Consensus 143 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~--li~~~~ 220 (638)
+=++.+...+++++|.....++....|. +...+..-+-++++.+++++|+.+.+.-.. ..+++. +=.+||
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pd--d~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc 88 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPD--DEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYC 88 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCC--cHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHH
Confidence 3467888999999999999999988765 666777778888999999999966554221 112222 244555
Q ss_pred --hCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHhH
Q 006630 221 --KNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV--VYNNLLSGYAQMGKMTD 296 (638)
Q Consensus 221 --~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~ 296 (638)
+.+..++|+..++.... .+..+...-...+.+.|++++|+++|+.+.+.+. +|.. .-..++.+-. --.
T Consensus 89 ~Yrlnk~Dealk~~~~~~~---~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd~d~~~r~nl~a~~a----~l~ 160 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLKGLDR---LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DDQDEERRANLLAVAA----ALQ 160 (652)
T ss_pred HHHcccHHHHHHHHhcccc---cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHH----hhh
Confidence 67999999999884332 2455677777889999999999999999987753 2221 1111211111 111
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHH---HHHHHhcCCHHHHHHHHHHHHHcCC------CCC-HH-------HHHHHHHHHH
Q 006630 297 AFELLKEMRRKGCDPNANSYTVL---IQALCRMEKMEEANRAFVEMERSGC------EAD-VV-------TYTTLISGFC 359 (638)
Q Consensus 297 a~~~~~~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~------~~~-~~-------~~~~li~~~~ 359 (638)
+. .+......| ..+|..+ ...+...|++.+|++++....+.+. .-+ .. .--.|.-.+.
T Consensus 161 ~~----~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ 235 (652)
T KOG2376|consen 161 VQ----LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQ 235 (652)
T ss_pred HH----HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 11 122222233 3344433 3356678999999999998843211 111 11 1122444567
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCCHHH--HHHHHHHHHH-----------CCCCCCHHHHH
Q 006630 360 KSRKIDRCYEILDSMIQRGILPNQLTY----LHIMLAHEKKEELEE--CVELMGEMRK-----------IGCVPDVSNYN 422 (638)
Q Consensus 360 ~~g~~~~A~~~~~~m~~~~~~p~~~t~----~~ll~~~~~~g~~~~--a~~~~~~~~~-----------~~~~~~~~~~~ 422 (638)
..|+.++|..++...++.... |.... |.++ +.....++-. ++..++.... ..-......-+
T Consensus 236 ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~ 313 (652)
T KOG2376|consen 236 LQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNN 313 (652)
T ss_pred HhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999987543 44222 2222 2222111111 1111111110 00011112223
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCCcH--HHHHHHHHH
Q 006630 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL-GQGCLIEACEYFKEMVGRGLLSAPQY--GTLKALLNS 499 (638)
Q Consensus 423 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~p~~--~~~~~ll~~ 499 (638)
.++.+|. +..+.+.++....... .|....=+.+..+.. +.....+|.+++...-+.. |.. .+....+..
T Consensus 314 ~lL~l~t--nk~~q~r~~~a~lp~~--~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~----p~~s~~v~L~~aQl 385 (652)
T KOG2376|consen 314 ALLALFT--NKMDQVRELSASLPGM--SPESLFPILLQEATKVREKKHKKAIELLLQFADGH----PEKSKVVLLLRAQL 385 (652)
T ss_pred HHHHHHh--hhHHHHHHHHHhCCcc--CchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC----CchhHHHHHHHHHH
Confidence 4444444 4445565555544432 344433333333332 2335778888888777664 433 344455666
Q ss_pred HHHcCCHHHHHHHHH--------HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh--CCCCCCHH----HHHH
Q 006630 500 LLRAQKVEMAKDVWS--------CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD--ADVMPQPD----TFAK 565 (638)
Q Consensus 500 ~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~p~~~----t~~~ 565 (638)
....|+++.|.+++. .+.+.+..|.. ..+++..+.+.++.+.|..++.+.+. ..-.+... ++.-
T Consensus 386 ~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~ 463 (652)
T KOG2376|consen 386 KISQGNPEVALEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMRE 463 (652)
T ss_pred HHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHH
Confidence 778999999999999 55554445554 44566777777777777777766653 11122222 2333
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 566 LMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 566 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
+...-.+.|+.++|...++++++.+|++..++
T Consensus 464 aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l 495 (652)
T KOG2376|consen 464 AAEFKLRHGNEEEASSLLEELVKFNPNDTDLL 495 (652)
T ss_pred HhHHHHhcCchHHHHHHHHHHHHhCCchHHHH
Confidence 33333566999999999999999999988763
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.27 E-value=2.7e-08 Score=102.85 Aligned_cols=297 Identities=17% Similarity=0.152 Sum_probs=215.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 006630 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDE-FVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWC 254 (638)
Q Consensus 176 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (638)
........+...|++++|++.++.-... .+|. .........+.+.|+.++|..++..+.++.|.|...|..+..+..
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 3344556677899999999999875543 4554 566777889999999999999999999998989999998888874
Q ss_pred hcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-hHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 006630 255 KEG-----KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM-TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328 (638)
Q Consensus 255 ~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 328 (638)
... +.+...++++++...- |......-+.-.+..-..+ ..+...+..+...|+++ +|+.|-..|.....
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEK 158 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhH
Confidence 433 5677888899887653 4333332222222221122 34556667777788663 56677777776666
Q ss_pred HHHHHHHHHHHHHc----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006630 329 MEEANRAFVEMERS----G----------CEADVV--TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392 (638)
Q Consensus 329 ~~~A~~~~~~m~~~----g----------~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 392 (638)
.+-...++...... + -.|... ++.-+...|...|++++|+++++..++..+. .+..|..-...
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~Kari 237 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHH
Confidence 66566666665432 1 134443 4456677888999999999999999986432 36678888889
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH------HH--HHHHHHHH
Q 006630 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD------SF--VVMVHGFL 464 (638)
Q Consensus 393 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~--~~li~~~~ 464 (638)
+-+.|++.+|.+.++...+.. .-|..+-+-.+..+.++|++++|.+++......+..|-.. .| .....+|.
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876 5677888888899999999999999999998776433221 22 34467889
Q ss_pred hcCCHHHHHHHHHHHHh
Q 006630 465 GQGCLIEACEYFKEMVG 481 (638)
Q Consensus 465 ~~g~~~~A~~~~~~m~~ 481 (638)
+.|++..|++.|....+
T Consensus 317 r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999887766543
No 75
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.26 E-value=4.3e-08 Score=100.67 Aligned_cols=418 Identities=12% Similarity=0.096 Sum_probs=274.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHH
Q 006630 203 YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD-IVVY 281 (638)
Q Consensus 203 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~ 281 (638)
..+.-|..+|..|.-++..+|+++.+.+.|++.....-.....|+.+...|...|....|..++++-......|+ ...+
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 345568899999999999999999999999987665455778899999999999999999999988765532343 3344
Q ss_pred HHHHHHHHH-cCCHhHHHHHHHHHHHc--CC--CCCHHhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCC-
Q 006630 282 NNLLSGYAQ-MGKMTDAFELLKEMRRK--GC--DPNANSYTVLIQALCRM-----------EKMEEANRAFVEMERSGC- 344 (638)
Q Consensus 282 ~~ll~~~~~-~g~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~- 344 (638)
-..-..|.+ .+..+++...-.+.... +. ......|..+.-+|... ....++.+.+++..+.+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 444444443 46777777776666652 11 11234444444444322 124567777888776542
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006630 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424 (638)
Q Consensus 345 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 424 (638)
.|++.-| +.--|+..++.+.|++...+..+-+..-+...|..+...+...+++.+|+.+.+...+.- ..|......-
T Consensus 477 dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~ 553 (799)
T KOG4162|consen 477 DPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGK 553 (799)
T ss_pred CchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhh
Confidence 3333333 333477788999999999999988667788899999889999999999999988765431 1111111111
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC---------------------CC------CCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 006630 425 IRLACKLGELKEAVNVWNEMEAA---------------------SL------SPG-TDSFVVMVHGFLGQGCLIEACEYF 476 (638)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~~---------------------~~------~p~-~~~~~~li~~~~~~g~~~~A~~~~ 476 (638)
+..-...++.++|......+... |. +.+ ..++..+..-... +.+.+..-.
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~~~se~ 631 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKSAGSEL 631 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhhccccc
Confidence 22222345555555444333210 00 001 1122221111111 111110000
Q ss_pred HHHHhCCCCCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006630 477 KEMVGRGLLSAPQ------YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550 (638)
Q Consensus 477 ~~m~~~~~~~~p~------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 550 (638)
. +......+.|+ ...|......+.+.+..++|...+.++.+. ..-....|......+...|+.++|.+.|..
T Consensus 632 ~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 632 K-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred c-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 0 11111112233 123445556677889999998888887665 233455677777888899999999999988
Q ss_pred HHhCCCCCCH-HHHHHHHHHHHhhcCHHHHHH--HHHHHHHHHHhccccc----chhhhhhhhhhHHHHHhhhhhhhhhh
Q 006630 551 MMDADVMPQP-DTFAKLMRGLKKLYNRQIAAE--ITEKVRKMAAERQITF----KMYKRRGERDLKEKAKKQVDGRKRRA 623 (638)
Q Consensus 551 m~~~~~~p~~-~t~~~ll~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~~~~~~~~~~~~~~ 623 (638)
.+. +.|+. ....++...+.+.|+...|.. ++..+++.+|.++.++ .+..+.|+.+.|.+.|+..-......
T Consensus 710 Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 710 ALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred HHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 875 47765 468889999999999988888 9999999999999986 68999999999999999988887777
Q ss_pred hhhhcc
Q 006630 624 RQRRWG 629 (638)
Q Consensus 624 ~~~~~~ 629 (638)
+=+.|.
T Consensus 788 PV~pFs 793 (799)
T KOG4162|consen 788 PVLPFS 793 (799)
T ss_pred Cccccc
Confidence 766654
No 76
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=3.8e-08 Score=97.14 Aligned_cols=419 Identities=12% Similarity=0.050 Sum_probs=248.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCH-HHHHHHHHHHHhCCC
Q 006630 146 KSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDE-FVFGCLLDALCKNSS 224 (638)
Q Consensus 146 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~ 224 (638)
+.....|+++.|+.+|.+....+|. |...|..=..+|+..|++++|++=-.+-.+. .|+- -.|.-+..++.-.|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~--nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT--NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC--ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 4566788999999999888887764 7777888888899999999888776665554 5653 578888888888899
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-----HHHHcCCHhHHHH
Q 006630 225 VKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS-----GYAQMGKMTDAFE 299 (638)
Q Consensus 225 ~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-----~~~~~g~~~~a~~ 299 (638)
+++|+.-|.+-.+..+.|...++.+..++. .+.+. +.. -.++..|..+.. .+...-.+. .
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~----~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~---~ 150 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAYL----EDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYV---K 150 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhhh----HHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHH---H
Confidence 999999998888877888888888888871 11111 110 112222222111 111111111 1
Q ss_pred HHHHHHHc----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCC----------------------CHHHH
Q 006630 300 LLKEMRRK----GCDP-NANSYTVLIQALCRMEKMEEANRAFVEME-RSGCEA----------------------DVVTY 351 (638)
Q Consensus 300 ~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~~----------------------~~~~~ 351 (638)
+++.+.+. +... |.....++.... ..+.. ....-..+. ..+..| -..-.
T Consensus 151 ~l~~~~~~p~~l~~~l~d~r~m~a~~~l~-~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~e 227 (539)
T KOG0548|consen 151 ILEIIQKNPTSLKLYLNDPRLMKADGQLK-GVDEL--LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKE 227 (539)
T ss_pred HHHHhhcCcHhhhcccccHHHHHHHHHHh-cCccc--cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHH
Confidence 11111111 0000 111111111000 00000 000000000 000000 01123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-------H
Q 006630 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV-------V 424 (638)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------l 424 (638)
..+.++..+..+++.|++-+....... -+..-++....++...|.+.++...-....+.|.. ...-|+. +
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHh
Confidence 456666677777888888777777654 24445555666777777777777666665554421 1122222 2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcH-HHHHHHHHHHHHc
Q 006630 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY-GTLKALLNSLLRA 503 (638)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~-~~~~~ll~~~~~~ 503 (638)
..+|.+.++++.|+..|.+.......|+. ..+....++++...+...-.+ |.. .-...-.+.+.+.
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~----pe~A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN----PEKAEEEREKGNEAFKK 371 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC----hhHHHHHHHHHHHHHhc
Confidence 33566677788888888876654333322 222333455555444444333 322 1222235667788
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhhcCHHHHHHH
Q 006630 504 QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT-FAKLMRGLKKLYNRQIAAEI 582 (638)
Q Consensus 504 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~g~~~~A~~~ 582 (638)
|++..|++.|.++++.. +-|...|..-.-+|.+.|.+.+|+.-.+..++. .|+... |..=+.++....+++.|.+.
T Consensus 372 gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAlea 448 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEA 448 (539)
T ss_pred cCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988875 336778888888999999999998888777765 555443 65556667777889999999
Q ss_pred HHHHHHHHHhcccccchhhhhhh
Q 006630 583 TEKVRKMAAERQITFKMYKRRGE 605 (638)
Q Consensus 583 ~~~~~~~~p~~~~~~~~y~~~g~ 605 (638)
++++++.+|++..+.+-|.++.+
T Consensus 449 y~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 449 YQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHhcCchhHHHHHHHHHHHH
Confidence 99999999998888877766665
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.25 E-value=5.4e-09 Score=106.59 Aligned_cols=232 Identities=19% Similarity=0.202 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCC
Q 006630 385 TYLHIMLAHEKKEELEECVELMGEMRKI-----GC-VPDV-SNYNVVIRLACKLGELKEAVNVWNEMEAA-----S-LSP 451 (638)
Q Consensus 385 t~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p 451 (638)
+...+...|...|+++.|..+++...+. |. .|.. ...+.+...|...+++++|..+|+++... | ..|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444555555555555555555554332 10 1111 11222344555555555555555554321 1 011
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CC
Q 006630 452 G-TDSFVVMVHGFLGQGCLIEACEYFKEMVGR-----GLLSAPQ-YGTLKALLNSLLRAQKVEMAKDVWSCIVTK---GC 521 (638)
Q Consensus 452 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~ 521 (638)
. ..+++.|...|.+.|++++|..++++.++- +.. .|. ...++.+...|...+++++|..++....+. -+
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~-~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS-HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC-hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 234445555555555555555555544321 110 122 223344444555555555555555544332 11
Q ss_pred CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhC-----C-CCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 006630 522 ELN----VYAWTIWIHSLFSNGHVKEACSYCLDMMDA-----D-VMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590 (638)
Q Consensus 522 ~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 590 (638)
.++ ..+++.|...|...|++++|.+++++++.. | ..+. ...++.+...|...++++.|.+++++.....
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 111 234555555555555555555555555431 1 1111 2234455555555555555555555554332
Q ss_pred ----Hhccccc-------chhhhhhhhhhHHHHHhhhh
Q 006630 591 ----AERQITF-------KMYKRRGERDLKEKAKKQVD 617 (638)
Q Consensus 591 ----p~~~~~~-------~~y~~~g~~~~A~~~~~~~~ 617 (638)
|+++... .+|..+|++++|.++-+++.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3333321 35555555555555555533
No 78
>PF13041 PPR_2: PPR repeat family
Probab=99.25 E-value=1.9e-11 Score=83.64 Aligned_cols=50 Identities=36% Similarity=0.741 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006630 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290 (638)
Q Consensus 241 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 290 (638)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56777777777777777777777777777777777777777777777653
No 79
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=4.9e-08 Score=92.95 Aligned_cols=290 Identities=11% Similarity=0.046 Sum_probs=203.4
Q ss_pred cCCHHHHHHHHHhchhC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006630 187 ARMVKKAIEVLDEMPKY-GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYV 265 (638)
Q Consensus 187 ~~~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 265 (638)
.++...|.+.+-.+... -++.|+.....+.+.+...|+.++|+..|++...-.|.++.......-.+.+.|+.+....+
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L 288 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSAL 288 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHH
Confidence 45555555554433322 35667778888888899999999999999888766555555555555666778888887777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006630 266 LVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345 (638)
Q Consensus 266 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 345 (638)
...+.... .-....|-.-+......+++..|+.+-++.++.... +...|-.-...+...|+.++|.-.|+...... +
T Consensus 289 ~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p 365 (564)
T KOG1174|consen 289 MDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-P 365 (564)
T ss_pred HHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-h
Confidence 77776432 123334444445555667888888888887765322 44445445567778889999999998877652 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006630 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM-LAHE-KKEELEECVELMGEMRKIGCVPDVSNYNV 423 (638)
Q Consensus 346 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 423 (638)
-+...|.-|+..|...|++.+|..+-+...+. +..+..+.+.+. ..|. ....-++|..+++...+.. |.-....+.
T Consensus 366 ~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~ 443 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVNL 443 (564)
T ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHHH
Confidence 46788999999999999999988777666553 233555555542 3332 2334577888888877653 223455567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006630 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483 (638)
Q Consensus 424 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 483 (638)
+...+...|..++++.+++..... .||....+.|.+.+...+.+++|++.|...++.+
T Consensus 444 ~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 444 IAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 777888889999999999888764 6888889999999999999999999998888876
No 80
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=8.5e-08 Score=89.47 Aligned_cols=453 Identities=10% Similarity=0.071 Sum_probs=269.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCC
Q 006630 145 IKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS 224 (638)
Q Consensus 145 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 224 (638)
+.-+....++..|+.+++--...+.. -...+-..+..++...|++++|+..+..+.... .++...+..|.-.+.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~E-EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 55566677888898888766544321 122233335556668899999999888776543 5666667667666666788
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 006630 225 VKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304 (638)
Q Consensus 225 ~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 304 (638)
+.+|..+-....+ +...-..|.....+.|+-++-..+-..+... ..---+|.......-.+.+|++++...
T Consensus 107 Y~eA~~~~~ka~k----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 107 YIEAKSIAEKAPK----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHHhhCCC----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 8888776655443 5555666677777778777766666555432 122233444444445788888888888
Q ss_pred HHcCCCCCHHhHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006630 305 RRKGCDPNANSYTVLI-QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ 383 (638)
Q Consensus 305 ~~~g~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 383 (638)
... .|+-...|..+ -+|.+..-++-+.++++-..+. ++.++...|.......+.=+..-|..-...+...+-..
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-- 252 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-- 252 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc--
Confidence 765 33444444333 3566777777788877776655 13344556655554444333333444444444433211
Q ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006630 384 LTYLHIMLAHEKK-----EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458 (638)
Q Consensus 384 ~t~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 458 (638)
| ..+.-+++. .+-+.|++++-.+.+. .|.. --.|+-.|.+.+++.+|..+..++. +.++.-|..
T Consensus 253 --~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~Eyil 321 (557)
T KOG3785|consen 253 --Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYIL 321 (557)
T ss_pred --c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhcC----CCChHHHHH
Confidence 1 122223332 2446677777666543 2322 2334556889999999998877764 323333332
Q ss_pred HHHHHHhcCC-------HHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006630 459 MVHGFLGQGC-------LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531 (638)
Q Consensus 459 li~~~~~~g~-------~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 531 (638)
-...++..|+ ..-|.+.|...=+.+.. ..+...-.++.+.+.-..++++..-+++.+...-..-|...+ .+
T Consensus 322 Kgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~e-cDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~ 399 (557)
T KOG3785|consen 322 KGVVFAALGQETGSREHLKIAQQFFQLVGESALE-CDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NL 399 (557)
T ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HH
Confidence 2222333332 34455555433333331 112222345666677778889999888888776333344444 47
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhhcCHHHHHHHHHHHHHHHHhccc-c-c----chhhhhh
Q 006630 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR-GLKKLYNRQIAAEITEKVRKMAAERQI-T-F----KMYKRRG 604 (638)
Q Consensus 532 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~-~~~~~g~~~~A~~~~~~~~~~~p~~~~-~-~----~~y~~~g 604 (638)
..+++..|.+.+|.++|-......+ .|..+|.+++. .|...++.+.| |+..++.+..... . + +...++|
T Consensus 400 AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lA---W~~~lk~~t~~e~fsLLqlIAn~CYk~~ 475 (557)
T KOG3785|consen 400 AQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLA---WDMMLKTNTPSERFSLLQLIANDCYKAN 475 (557)
T ss_pred HHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHH---HHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 7899999999999999977654432 45666666555 55666777665 4555666533222 2 1 6778899
Q ss_pred hhhhHHHHHhhhhhhhhhhhhhhccCCc
Q 006630 605 ERDLKEKAKKQVDGRKRRARQRRWGGGR 632 (638)
Q Consensus 605 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 632 (638)
++=-|.+.|+.++...+. ..-|.|-+
T Consensus 476 eFyyaaKAFd~lE~lDP~--pEnWeGKR 501 (557)
T KOG3785|consen 476 EFYYAAKAFDELEILDPT--PENWEGKR 501 (557)
T ss_pred HHHHHHHhhhHHHccCCC--ccccCCcc
Confidence 999999999988776553 33455543
No 81
>PF13041 PPR_2: PPR repeat family
Probab=99.21 E-value=4.3e-11 Score=81.94 Aligned_cols=49 Identities=41% Similarity=0.722 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006630 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394 (638)
Q Consensus 346 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 394 (638)
||+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555544
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.21 E-value=1.4e-08 Score=89.45 Aligned_cols=206 Identities=15% Similarity=0.064 Sum_probs=162.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006630 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464 (638)
Q Consensus 385 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 464 (638)
+..-+...|...|+...|..-+++.++.. +.+..++..+...|-+.|+.+.|.+-|++..... +.+....|....-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 44556677888888888888888888875 5566778888888889999999999999888775 566678888888889
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 006630 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544 (638)
Q Consensus 465 ~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 544 (638)
.+|++++|...|++.+....- .--..||..+.-+..+.|+.+.|.+.|++.++.... ...+.-.+.......|++-.|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y-~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAY-GEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCC-CCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHH
Confidence 999999999999988875322 122457777777777899999999999998887322 455666778888889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccc
Q 006630 545 CSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595 (638)
Q Consensus 545 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 595 (638)
..+++.....+ .++...+...+..-...||.+.+-++-..+....|..+.
T Consensus 193 r~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 193 RLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 99888887655 488888877888888889998888888888887776554
No 83
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.18 E-value=1.5e-07 Score=99.14 Aligned_cols=163 Identities=10% Similarity=-0.020 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCC-CCCCHHHHHHHHH
Q 006630 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYG-CEPDEFVFGCLLD 217 (638)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~~~~~~~~~li~ 217 (638)
.+|..|...|...-+...|.+.|+.....++. +..........|++...++.|..+.-..-+.. ...-..-|....-
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat--daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT--DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch--hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 35666666666666666666666666665543 45556666666666666666666522211110 0001112222334
Q ss_pred HHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHhH
Q 006630 218 ALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV-VYNNLLSGYAQMGKMTD 296 (638)
Q Consensus 218 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~ 296 (638)
.|.+.++...|..-|+....-.|.|...|..++.+|..+|++..|.++|.+.... .|+.. .---....-+..|.+.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHH
Confidence 4555666666666666665555666666666666666666666666666665543 23221 11111222344555555
Q ss_pred HHHHHHHHH
Q 006630 297 AFELLKEMR 305 (638)
Q Consensus 297 a~~~~~~~~ 305 (638)
+...++...
T Consensus 649 ald~l~~ii 657 (1238)
T KOG1127|consen 649 ALDALGLII 657 (1238)
T ss_pred HHHHHHHHH
Confidence 555555443
No 84
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.18 E-value=1.2e-08 Score=99.85 Aligned_cols=220 Identities=10% Similarity=0.008 Sum_probs=127.8
Q ss_pred CCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006630 362 RKIDRCYEILDSMIQRG-ILPN--QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438 (638)
Q Consensus 362 g~~~~A~~~~~~m~~~~-~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 438 (638)
+..+.++.-+.+++... ..|+ ...|......+...|+.++|...|....+.. +.+...|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34455555555555432 1121 2345555556666777777777777766654 445667777777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006630 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518 (638)
Q Consensus 439 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 518 (638)
..|+...+.+ +-+...|..+...+...|++++|++.|+...+.. |+..........+...++.++|...|.+...
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~----P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD----PNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 7777777654 3445667777777777777788877777777665 3221111111223345677777777766543
Q ss_pred cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC---C--CCC-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 519 KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA---D--VMP-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 519 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~--~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
. ..|+...| .......|+..++ ..++.+.+. . +.| ....|..+...+.+.|++++|+..++++++.+|.
T Consensus 194 ~-~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 194 K-LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred h-CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 2 12222112 2222334554433 233343321 0 011 2346777788888888888888888888888763
No 85
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.16 E-value=2.1e-07 Score=97.96 Aligned_cols=449 Identities=11% Similarity=0.010 Sum_probs=274.1
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 006630 153 KFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF 232 (638)
Q Consensus 153 ~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 232 (638)
+...|+..|-+..+.++. =...|..|...|....+...|.+.|+...+.+ ..|......+.+.|+...+++.|..+.
T Consensus 473 ~~~~al~ali~alrld~~--~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS--LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 377788887777776644 34578889999988889999999999988765 567788999999999999999999985
Q ss_pred HHHhccCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC
Q 006630 233 DEMRERFKPSL--RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310 (638)
Q Consensus 233 ~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 310 (638)
-...+..+.-. ..|.-..-.|.+.++...|..-|+...+.. +.|...|..+..+|...|.+..|.++|.+.... .
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 44444322222 234445667888999999999999998775 567889999999999999999999999988765 3
Q ss_pred CCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH-------HHH
Q 006630 311 PNA-NSYTVLIQALCRMEKMEEANRAFVEMERSG-----CEAD-VVTYTTLISGFCKSRKIDRCYEILDS-------MIQ 376 (638)
Q Consensus 311 ~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~-------m~~ 376 (638)
|+. ..---...+-|..|.+.+|...+..+.... ...+ ..++-.+...+.-.|-..+|.++++. ...
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 432 222223335677899999998887765421 0111 22333333333333333333333333 222
Q ss_pred CCCCCCHHHHHHHHHHHH-----------------------hcCCH---H---HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006630 377 RGILPNQLTYLHIMLAHE-----------------------KKEEL---E---ECVELMGEMRKIGCVPDVSNYNVVIRL 427 (638)
Q Consensus 377 ~~~~p~~~t~~~ll~~~~-----------------------~~g~~---~---~a~~~~~~~~~~~~~~~~~~~~~li~~ 427 (638)
.....+...|..+-++|. ..+.. + -|.+.+-.-.+ +..+..+|..|+..
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGin 784 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGIN 784 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHH
Confidence 221112222222222221 11111 1 01111111111 11223334344333
Q ss_pred HHH----cC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHH
Q 006630 428 ACK----LG----ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499 (638)
Q Consensus 428 ~~~----~g----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~ 499 (638)
|.+ +| +...|...+.+..+.. ..+...|+.|... ...|++.-|...|-+-.... +....+|..+.-.
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se---p~~~~~W~NlgvL 859 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE---PTCHCQWLNLGVL 859 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc---ccchhheecccee
Confidence 332 22 2235677777766654 4566788877665 66678888887777666554 3456677777777
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH--HHh--CCCCCCHHHHHHHHHHHHhhcC
Q 006630 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD--MMD--ADVMPQPDTFAKLMRGLKKLYN 575 (638)
Q Consensus 500 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--m~~--~~~~p~~~t~~~ll~~~~~~g~ 575 (638)
|....+++.|...|....... +.|...|--........|+.-++..+|.. ... .|-.|+..-|.....--...|+
T Consensus 860 ~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~ 938 (1238)
T KOG1127|consen 860 VLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGN 938 (1238)
T ss_pred EEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccc
Confidence 788888999999998887763 22566776666666677887777777765 222 3445555555544444444455
Q ss_pred HHHHHHHHH----------HHHHHHHhccccc----chhhhhhhhhhHHHHHhh
Q 006630 576 RQIAAEITE----------KVRKMAAERQITF----KMYKRRGERDLKEKAKKQ 615 (638)
Q Consensus 576 ~~~A~~~~~----------~~~~~~p~~~~~~----~~y~~~g~~~~A~~~~~~ 615 (638)
.+.-+...+ +.++-.|+...++ .+..+.+.+.+|.+...+
T Consensus 939 ~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~R 992 (1238)
T KOG1127|consen 939 IEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATR 992 (1238)
T ss_pred hHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 544443333 3344445554444 355667777777776665
No 86
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=5.2e-08 Score=96.21 Aligned_cols=402 Identities=11% Similarity=0.048 Sum_probs=246.3
Q ss_pred HHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHH
Q 006630 182 RRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVE 261 (638)
Q Consensus 182 ~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 261 (638)
.+....|+++.|+..|...+... ++|.+.|..=..+|++.|++++|.+=-.+-.+..|.-...|+-...++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 45567899999999999887765 56788888889999999999988876555555445556788999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHH-----HHHHhcCCHHHHHHHH
Q 006630 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI-----QALCRMEKMEEANRAF 336 (638)
Q Consensus 262 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li-----~~~~~~g~~~~A~~~~ 336 (638)
|+..|.+-++.. +-+...++.+..++.. +.+. +... .+...|..+. +.+...-.+.. ++
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~----~~~~-----~~~~---~~p~~~~~l~~~p~t~~~~~~~~~~~---~l 152 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYLE----DYAA-----DQLF---TKPYFHEKLANLPLTNYSLSDPAYVK---IL 152 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhhH----HHHh-----hhhc---cCcHHHHHhhcChhhhhhhccHHHHH---HH
Confidence 999999888764 4455667777766611 1111 1110 1112221111 11111111111 11
Q ss_pred HHHHHcCCCCC-HHH---HHHHHHHHHhcCCHHH-HHHHHHHHHH-CCCCC----------------------CHHHHHH
Q 006630 337 VEMERSGCEAD-VVT---YTTLISGFCKSRKIDR-CYEILDSMIQ-RGILP----------------------NQLTYLH 388 (638)
Q Consensus 337 ~~m~~~g~~~~-~~~---~~~li~~~~~~g~~~~-A~~~~~~m~~-~~~~p----------------------~~~t~~~ 388 (638)
..+.. .|. +.. ...++.+.......+. .+..-..+.. .+..| -..-...
T Consensus 153 ~~~~~---~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~ 229 (539)
T KOG0548|consen 153 EIIQK---NPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKE 229 (539)
T ss_pred HHhhc---CcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHH
Confidence 11111 010 000 0011111111000000 0000000000 00001 1122445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHH
Q 006630 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV-------MVH 461 (638)
Q Consensus 389 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-------li~ 461 (638)
+.++..+..+++.+.+-+....+.. .+..-++....+|...|.+.+....-+...+.|- -...-|+. +..
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhh
Confidence 6667777788888888888887754 4555556666788888888877777776665541 12222332 334
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCC
Q 006630 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV-YAWTIWIHSLFSNGH 540 (638)
Q Consensus 462 ~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~ 540 (638)
+|.+.++++.|+.+|.+.+.... .|+. ..+....+++....+...-. .|+. .--..-...+.+.|+
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~R--t~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHR--TPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhc--CHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccC
Confidence 56667788888888888776543 3332 23344455555555544433 3332 112223677889999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhHHHHHhhh
Q 006630 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLKEKAKKQV 616 (638)
Q Consensus 541 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~~~~~~~ 616 (638)
+..|+..|.+++... +-|...|....-+|.+.|++..|..-.++.++++|+....+ .++....+|++|.+.|++-
T Consensus 374 y~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999874 33567799999999999999999999999999999988876 5888999999999999985
Q ss_pred hhhh
Q 006630 617 DGRK 620 (638)
Q Consensus 617 ~~~~ 620 (638)
.+..
T Consensus 453 le~d 456 (539)
T KOG0548|consen 453 LELD 456 (539)
T ss_pred HhcC
Confidence 5444
No 87
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.13 E-value=9.1e-08 Score=93.68 Aligned_cols=220 Identities=12% Similarity=0.022 Sum_probs=142.6
Q ss_pred cCChhHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 006630 151 MRKFGAVWALMEEMRKEKPQLI--TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228 (638)
Q Consensus 151 ~~~~~~A~~~~~~m~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 228 (638)
.+..+.++.-+.++....+..+ ....|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456777777777775443222 23456667777788888888888888887764 44677888888888888888888
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC
Q 006630 229 AKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308 (638)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 308 (638)
...|+...+..|.+..+|..+...+...|++++|.+.|++..+.. |+..........+...++.++|.+.++.....
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 888888877767778888888888888888888888888888763 43322222222334556788888888665433
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006630 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERS---GC---EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378 (638)
Q Consensus 309 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 378 (638)
..|+... ..+.. ...|+...+ +.+..+.+. .+ +.....|..+...+.+.|++++|+..|++..+.+
T Consensus 195 ~~~~~~~-~~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQWG-WNIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccccH-HHHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2333222 22222 234444333 234333321 00 1123467777778888888888888888877654
No 88
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=1.6e-06 Score=91.39 Aligned_cols=142 Identities=13% Similarity=0.040 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006630 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532 (638)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 532 (638)
...|..+..+-.+.|...+|++-|-+. .|...|..+++.+.+.|.+++-.+++..+.++.-+|.+. +.++
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika--------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA--------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELI 1173 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc--------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHH
Confidence 458999999999999999998877443 455678899999999999999999998888776666655 4688
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccccchhhhhhhhhhHHHH
Q 006630 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKA 612 (638)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~y~~~g~~~~A~~~ 612 (638)
-+|++.++..|-.+++ .-||......+.+-|...|.++.|+-++..+-... .+...+...|+++-|...
T Consensus 1174 ~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a----~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFA----KLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred HHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHH
Confidence 8999999988765553 25888889999999999999999988876554332 233567778888887765
Q ss_pred Hhh
Q 006630 613 KKQ 615 (638)
Q Consensus 613 ~~~ 615 (638)
-++
T Consensus 1243 aRK 1245 (1666)
T KOG0985|consen 1243 ARK 1245 (1666)
T ss_pred hhh
Confidence 554
No 89
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.12 E-value=3.8e-07 Score=92.76 Aligned_cols=220 Identities=13% Similarity=0.097 Sum_probs=160.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 006630 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435 (638)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 435 (638)
..+.+.|+++.|+..|-+... ..-.+.+.....++.+|+.+++.+..... -..-|..+.+.|...|+++
T Consensus 714 ~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe 782 (1636)
T KOG3616|consen 714 DHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFE 782 (1636)
T ss_pred HHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHH
Confidence 345566777777776654321 22345566677889999999998877532 2334667778999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006630 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515 (638)
Q Consensus 436 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 515 (638)
.|.++|-+.- .++--|..|.+.|++++|.++-.+.. |. ......|.+-..-+-..|++.+|.++|-.
T Consensus 783 ~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~--e~t~~~yiakaedldehgkf~eaeqlyit 849 (1636)
T KOG3616|consen 783 IAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GP--EATISLYIAKAEDLDEHGKFAEAEQLYIT 849 (1636)
T ss_pred HHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--Cc--hhHHHHHHHhHHhHHhhcchhhhhheeEE
Confidence 9999997653 56677889999999999998876653 31 23445565556667788999999988755
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccc
Q 006630 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595 (638)
Q Consensus 516 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 595 (638)
+. .|+. -|..|-++|..++.+++.++-- | ..-..|...+..-+...|+++.|+.-+-++-+.. .
T Consensus 850 i~----~p~~-----aiqmydk~~~~ddmirlv~k~h--~-d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~k----a 913 (1636)
T KOG3616|consen 850 IG----EPDK-----AIQMYDKHGLDDDMIRLVEKHH--G-DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFK----A 913 (1636)
T ss_pred cc----CchH-----HHHHHHhhCcchHHHHHHHHhC--h-hhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHH----H
Confidence 42 4553 3678999999999988876532 1 2225677888888888999999998877665443 3
Q ss_pred ccchhhhhhhhhhHHHHHhh
Q 006630 596 TFKMYKRRGERDLKEKAKKQ 615 (638)
Q Consensus 596 ~~~~y~~~g~~~~A~~~~~~ 615 (638)
++|||...|.|++|.++-+.
T Consensus 914 avnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 914 AVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred HHHHhhhhhhHHHHHHHHhc
Confidence 67999999999999998765
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.12 E-value=7e-07 Score=90.79 Aligned_cols=202 Identities=10% Similarity=-0.043 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHH--
Q 006630 138 YDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV-FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGC-- 214 (638)
Q Consensus 138 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~-- 214 (638)
...|..+...+...|+.+.+...+.......+...+... .......+...|++++|.+.+++..+.. +.|...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 345555666666667777776666666655544344322 2222334456788888888888776652 334434432
Q ss_pred -HHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006630 215 -LLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293 (638)
Q Consensus 215 -li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 293 (638)
+.......+..+.+.+.++......+........+...+...|++++|.+.+++..+.. +.+...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 11112223455555555544323334444555566677777888888888888877764 3445666777777777888
Q ss_pred HhHHHHHHHHHHHcCC-CCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 294 MTDAFELLKEMRRKGC-DPNA--NSYTVLIQALCRMEKMEEANRAFVEMER 341 (638)
Q Consensus 294 ~~~a~~~~~~~~~~g~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (638)
+++|...+++...... .|+. ..|..+...+...|++++|..+|++...
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 8888887777765422 1222 2344566777777788888777777653
No 91
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=2.5e-07 Score=84.42 Aligned_cols=419 Identities=13% Similarity=0.080 Sum_probs=210.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc
Q 006630 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKE 256 (638)
Q Consensus 177 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 256 (638)
|..++..+.+..++.+|++++..-.+.. +.+......|..+|-...++..|...++++....|.-...--.-...+.+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 4555555666666667766666554442 224555566666666666666666666666554333222222334555566
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 006630 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY--AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334 (638)
Q Consensus 257 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 334 (638)
+.+..|+++...|... |+...-..-+.+. ...+++..+..++++....| +..+.+...-...+.|+++.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 6666666666666531 2222211122221 23355555666555544221 33333334444456667777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLT----YLHIMLAHEKKEELEECVELMGEMR 410 (638)
Q Consensus 335 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t----~~~ll~~~~~~g~~~~a~~~~~~~~ 410 (638)
-|+...+.+--.....||..+ +..+.|+++.|+++..+++++|++.-+.. -+-.+++- ..|+. ..++...
T Consensus 166 kFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt---~~lh~Sa- 239 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNT---LVLHQSA- 239 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccch---HHHHHHH-
Confidence 776666543333345555444 34455666777777766666665411100 00000000 00000 0000000
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc
Q 006630 411 KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS-LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489 (638)
Q Consensus 411 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~ 489 (638)
-...+|.-...+.+.|+++.|.+.+-.|+-+. -..|++|...+.-. -..+++.+..+-+.-+++.. +-.
T Consensus 240 ------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n---PfP 309 (459)
T KOG4340|consen 240 ------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN---PFP 309 (459)
T ss_pred ------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC---CCC
Confidence 01223333445678899999999988886432 23455666554322 22455666666555566554 234
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHhCCCCCCHHHHHH-H
Q 006630 490 YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE-LNVYAWTIWIHSLFS-NGHVKEACSYCLDMMDADVMPQPDTFAK-L 566 (638)
Q Consensus 490 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~t~~~-l 566 (638)
..||..++-.||+..-++.|-+++-+-...... .+...|+ +++++.- .-..++|.+-++.+...- ..-+.. .
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l----~~kLRklA 384 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGML----TEKLRKLA 384 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 568999999999999999888887553322111 1223333 3444443 345677766555443210 000010 0
Q ss_pred HHHH-HhhcC----HHHHHHHHHHHHHHHHhcccc-cchhhhhhhhhhHHHHHhhhhhhhhhh
Q 006630 567 MRGL-KKLYN----RQIAAEITEKVRKMAAERQIT-FKMYKRRGERDLKEKAKKQVDGRKRRA 623 (638)
Q Consensus 567 l~~~-~~~g~----~~~A~~~~~~~~~~~p~~~~~-~~~y~~~g~~~~A~~~~~~~~~~~~~~ 623 (638)
+..- .+..+ ...|.+-++..+++.-.--.+ ..+|.+..++..++++|++..+-.+.+
T Consensus 385 i~vQe~r~~~dd~a~R~ai~~Yd~~LE~YLPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~eh 447 (459)
T KOG4340|consen 385 IQVQEARHNRDDEAIRKAVNEYDETLEKYLPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDH 447 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhccc
Confidence 1111 11111 122223333333332111111 258889999999999999866655433
No 92
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.06 E-value=1.6e-07 Score=83.03 Aligned_cols=197 Identities=14% Similarity=0.092 Sum_probs=130.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHH
Q 006630 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALC 220 (638)
Q Consensus 141 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 220 (638)
...|.-.|...|++..|..-+++..+.+|. +..+|..+...|.+.|..+.|.+.|++..+.. +.+-.+.|.....+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs--~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS--YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 445556677777777777777777777665 55667777777777777777777777776653 344566777777777
Q ss_pred hCCCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 006630 221 KNSSVKEAAKLFDEMRER--FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298 (638)
Q Consensus 221 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 298 (638)
..|++++|...|++.... ++.-..+|..+.-+..+.|+++.|...|++.++.. +-...+...+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 777777777777776542 33345566667777777777777777777776654 223445556666666777777777
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006630 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342 (638)
Q Consensus 299 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (638)
..++.....+. ++..+.-..|..--..|+.+.+-++=.++...
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77766666544 56666666666666667766666655555544
No 93
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.05 E-value=1.3e-06 Score=88.80 Aligned_cols=198 Identities=12% Similarity=0.021 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhchhCC-CCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 006630 175 EVFVILMRRFASARMVKKAIEVLDEMPKYG-CEPDE-FVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYG 252 (638)
Q Consensus 175 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~ 252 (638)
..+..+...+...|+.+.+.+.+....+.. ..++. .........+...|++++|..++++..+..|.+...+.. ...
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHH
Confidence 344445555555666666555555543321 11222 222222334456778888888887777666666655553 222
Q ss_pred HHh----cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 006630 253 WCK----EGKLVEAKYVLVQMKDAGFEPD-IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRME 327 (638)
Q Consensus 253 ~~~----~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 327 (638)
+.. .+..+.+.+.+... ....|+ ......+...+...|++++|.+.+++..+.. +.+...+..+...|...|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 222 34444444444431 111222 2333445566677777777777777777653 224556667777777777
Q ss_pred CHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 328 KMEEANRAFVEMERSGC-EADV--VTYTTLISGFCKSRKIDRCYEILDSMIQ 376 (638)
Q Consensus 328 ~~~~A~~~~~~m~~~g~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (638)
++++|...+++...... .++. ..|..+...+...|++++|+.++++...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 77777777777665421 1222 2344566667777777777777777653
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.05 E-value=6.1e-09 Score=100.33 Aligned_cols=271 Identities=12% Similarity=0.071 Sum_probs=169.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006630 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401 (638)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 401 (638)
-+.-.|++..++.-.+ .....-+.+.....-+.+++...|+++.++. ++... ..|.......+...+....+-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchHH
Confidence 3445577777765544 2221111123344455667777777665443 33222 35565555555555544344455
Q ss_pred HHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 402 CVELMGEMRKIGCV-PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480 (638)
Q Consensus 402 a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 480 (638)
+..-++........ .+.........++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 54444433322222 22233333334566788899888887643 356677778889999999999999999998
Q ss_pred hCCCCCCCcHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006630 481 GRGLLSAPQYGTLKALLNSLL----RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556 (638)
Q Consensus 481 ~~~~~~~p~~~~~~~ll~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 556 (638)
+.+ .| .+...+..++. ..+++.+|..+|+++.+. +.+++...+.+..++...|++++|.+++.+.+..+
T Consensus 159 ~~~----eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~- 231 (290)
T PF04733_consen 159 QID----ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD- 231 (290)
T ss_dssp CCS----CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--
T ss_pred hcC----Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-
Confidence 764 33 34444555444 234689999999998665 56788889999999999999999999999887543
Q ss_pred CCCHHHHHHHHHHHHhhcCH-HHHHHHHHHHHHHHHhcccccchhhhhhhhhhHH
Q 006630 557 MPQPDTFAKLMRGLKKLYNR-QIAAEITEKVRKMAAERQITFKMYKRRGERDLKE 610 (638)
Q Consensus 557 ~p~~~t~~~ll~~~~~~g~~-~~A~~~~~~~~~~~p~~~~~~~~y~~~g~~~~A~ 610 (638)
.-++.|+.+++......|+. +.+.++..++....|+++..-+.-.+...+|++.
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~~~~~~FD~~~ 286 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLAEKEAEFDRAV 286 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Confidence 23566788888777788877 7788899999999999888766555555555543
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.05 E-value=1.1e-06 Score=82.05 Aligned_cols=94 Identities=10% Similarity=0.067 Sum_probs=70.5
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhcCH
Q 006630 501 LRAQKVEMAKDVWSCIVTKGCELNV---YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLYNR 576 (638)
Q Consensus 501 ~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~ 576 (638)
...+.+.++.+-.+...+....-.. ..+..+-.++...|++.+|++.+.+.++. .|| ..++---..+|.....+
T Consensus 280 ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~Y 357 (504)
T KOG0624|consen 280 IEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMY 357 (504)
T ss_pred HhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHH
Confidence 3556677777777777765322112 23445556778889999999999998854 666 66788888888888899
Q ss_pred HHHHHHHHHHHHHHHhcccc
Q 006630 577 QIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 577 ~~A~~~~~~~~~~~p~~~~~ 596 (638)
+.|+.-++++.+.+|+|..+
T Consensus 358 D~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 358 DDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HHHHHHHHHHHhcCcccHHH
Confidence 99999999999999988766
No 96
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.04 E-value=1.6e-06 Score=88.35 Aligned_cols=412 Identities=15% Similarity=0.147 Sum_probs=249.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHH
Q 006630 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219 (638)
Q Consensus 140 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 219 (638)
.-.+.++.+...|+-++|-++ ...++.. ...|+.|.+.|.+-+|......= ..+..|......+..++
T Consensus 591 lk~sy~q~l~dt~qd~ka~el----k~sdgd~------laaiqlyika~~p~~a~~~a~n~--~~l~~de~il~~ia~al 658 (1636)
T KOG3616|consen 591 LKRSYLQALMDTGQDEKAAEL----KESDGDG------LAAIQLYIKAGKPAKAARAALND--EELLADEEILEHIAAAL 658 (1636)
T ss_pred HHHHHHHHHHhcCchhhhhhh----ccccCcc------HHHHHHHHHcCCchHHHHhhcCH--HHhhccHHHHHHHHHHH
Confidence 334556666777877777554 2222221 23677888888888776653211 11234444444444444
Q ss_pred HhC-------------CCHHHHHHHHHHHh------c----cCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006630 220 CKN-------------SSVKEAAKLFDEMR------E----RFKPSLRHFT-SLLYGWCKEGKLVEAKYVLVQMKDAGFE 275 (638)
Q Consensus 220 ~~~-------------g~~~~A~~~~~~~~------~----~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~ 275 (638)
.+. .++++|.+.|++-. + .+|..+++.. .....+.+.|+++.|..-|-+..
T Consensus 659 ik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~----- 733 (1636)
T KOG3616|consen 659 IKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN----- 733 (1636)
T ss_pred HhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----
Confidence 433 34444444443210 0 0222232221 22334455666666666554432
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006630 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355 (638)
Q Consensus 276 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 355 (638)
.....+.+......|.+|+.+++.+..... -..-|..+.+.|...|+++.|.++|.+.- .++-.|
T Consensus 734 ----~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai 798 (1636)
T KOG3616|consen 734 ----CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAI 798 (1636)
T ss_pred ----hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHH
Confidence 123345666777899999999998887632 33457788899999999999999997643 245567
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 006630 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435 (638)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 435 (638)
..|.+.|++++|.++-++.. |.......|..-..-+-+.|++.+|.+++-.+. .|+. .|.+|-+.|..+
T Consensus 799 ~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~d 867 (1636)
T KOG3616|consen 799 DMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDD 867 (1636)
T ss_pred HHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcch
Confidence 88999999999999876654 444456667666777888999999998875544 4543 478899999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006630 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515 (638)
Q Consensus 436 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 515 (638)
+.+++.++-.-.. -..+...+..-|...|+..+|...|-+.- -|.+.++.|-..+.+++|.++-+.
T Consensus 868 dmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~-----------d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 868 DMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAG-----------DFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred HHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhh-----------hHHHHHHHhhhhhhHHHHHHHHhc
Confidence 9888877653211 12466677788888999999988775542 244556677777777777665332
Q ss_pred HHHcCCCCCHH-----HHH------HHHHHHHccCCHHHHHHH-------------HHHHHhCCCCCCHHHHHHHHHHHH
Q 006630 516 IVTKGCELNVY-----AWT------IWIHSLFSNGHVKEACSY-------------CLDMMDADVMPQPDTFAKLMRGLK 571 (638)
Q Consensus 516 ~~~~~~~p~~~-----~~~------~li~~~~~~g~~~~A~~~-------------~~~m~~~~~~p~~~t~~~ll~~~~ 571 (638)
.|-. |.. .|. +-+..+-++|..++|+.+ -+-..+. -.|. ....+..-+.
T Consensus 934 ---egg~-n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~-k~~~--vhlk~a~~le 1006 (1636)
T KOG3616|consen 934 ---EGGA-NAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD-KMGE--VHLKLAMFLE 1006 (1636)
T ss_pred ---cccc-cHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc-cCcc--chhHHhhhhh
Confidence 2111 111 111 112334444554444433 2222211 1222 2233344456
Q ss_pred hhcCHHHHHHHHHHHHHHHHhccc----------------------ccchhhhhhhhhhHHHHHhh
Q 006630 572 KLYNRQIAAEITEKVRKMAAERQI----------------------TFKMYKRRGERDLKEKAKKQ 615 (638)
Q Consensus 572 ~~g~~~~A~~~~~~~~~~~p~~~~----------------------~~~~y~~~g~~~~A~~~~~~ 615 (638)
..|+++.|.+.+-++++++.-|.. ++.|+.+..+|..|+++-+.
T Consensus 1007 degk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~ 1072 (1636)
T KOG3616|consen 1007 DEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEA 1072 (1636)
T ss_pred hccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHh
Confidence 779999999988888887643221 12577888888888887655
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=1.3e-06 Score=79.90 Aligned_cols=287 Identities=15% Similarity=0.097 Sum_probs=130.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHH
Q 006630 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL 216 (638)
Q Consensus 137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li 216 (638)
+......|...|-...+|..|-..|+++....|....-..| -..++.+.+.+.+|+.+...|... ++...-..-+
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY--~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqL 117 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY--QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQL 117 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH--HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHH
Confidence 44444555555555555555555555554443321111111 223344455555555555544321 1111111111
Q ss_pred HH--HHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006630 217 DA--LCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294 (638)
Q Consensus 217 ~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 294 (638)
.+ .-..+++..+..+.++.+.. .+..+.+.......+.|++++|++-|+...+-+--.....|+..+..| +.|++
T Consensus 118 qaAIkYse~Dl~g~rsLveQlp~e--n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qy 194 (459)
T KOG4340|consen 118 QAAIKYSEGDLPGSRSLVEQLPSE--NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQY 194 (459)
T ss_pred HHHHhcccccCcchHHHHHhccCC--CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhH
Confidence 11 11234455555555544421 133344444444455555555555555555433222334444333322 34455
Q ss_pred hHHHHHHHHHHHcCCCCCHHh----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006630 295 TDAFELLKEMRRKGCDPNANS----YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370 (638)
Q Consensus 295 ~~a~~~~~~~~~~g~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 370 (638)
+.|++...+++++|+...... -+-.++.-. .|+ -..+.... =+..+|.-...+.+.|+++.|.+.
T Consensus 195 asALk~iSEIieRG~r~HPElgIGm~tegiDvrs-vgN---t~~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~ea 263 (459)
T KOG4340|consen 195 ASALKHISEIIERGIRQHPELGIGMTTEGIDVRS-VGN---TLVLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEA 263 (459)
T ss_pred HHHHHHHHHHHHhhhhcCCccCccceeccCchhc-ccc---hHHHHHHH-------HHHHhhhhhhhhhhcccHHHHHHH
Confidence 555555555555554311100 000000000 000 00000000 012233334456677888888887
Q ss_pred HHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006630 371 LDSMIQR-GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM 444 (638)
Q Consensus 371 ~~~m~~~-~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 444 (638)
+-.|.-+ ....|++|...+.-.- ..+++.++.+-+..+.+.+ +-...||..++-.|||..-++-|-+++.+-
T Consensus 264 LtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 264 LTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred hhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 7777533 2344667766543321 2344555555555666554 345567777777888888888888777553
No 98
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=3.6e-05 Score=81.70 Aligned_cols=277 Identities=15% Similarity=0.152 Sum_probs=142.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHH
Q 006630 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332 (638)
Q Consensus 253 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 332 (638)
...++-+++|..+|++.- .+....+.|+. ..++.+.|.+.-+... ...+|..+..+-.+.|.+.+|
T Consensus 1058 ai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred HhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHH
Confidence 334444555555555432 23333333333 2244444444433321 234555566666666666665
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412 (638)
Q Consensus 333 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 412 (638)
.+-|-+.. |+..|...+....+.|.+++-.+++....++.-.|...+ .++-+|++.+++.+..+++
T Consensus 1124 ieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi------ 1189 (1666)
T KOG0985|consen 1124 IESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFI------ 1189 (1666)
T ss_pred HHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHh------
Confidence 55554432 455555566666666666666665555554444443332 4555555555554443332
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHH
Q 006630 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492 (638)
Q Consensus 413 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~ 492 (638)
.-|+......+.+-|...|.++.|.-+|..+. .|..|...+...|.++.|.+.-++. .+..|
T Consensus 1190 -~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKA--------ns~kt 1251 (1666)
T KOG0985|consen 1190 -AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKA--------NSTKT 1251 (1666)
T ss_pred -cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhc--------cchhH
Confidence 13455555555555555566655555554432 4555555666666666665444332 33446
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 006630 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLK 571 (638)
Q Consensus 493 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~ 571 (638)
|..+-.+|...+.+..| +|-...+-....-..-++.-|-..|.++|-+.+++..+ |++-- -..|+-|.-.|.
T Consensus 1252 WK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1252 WKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTELAILYS 1324 (1666)
T ss_pred HHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHHHHHH
Confidence 66666666655544333 12222222234455667888888899999888887755 44332 234555555555
Q ss_pred hhcCHHHHHHHH
Q 006630 572 KLYNRQIAAEIT 583 (638)
Q Consensus 572 ~~g~~~~A~~~~ 583 (638)
+ -+.++-.+.+
T Consensus 1325 k-ykp~km~EHl 1335 (1666)
T KOG0985|consen 1325 K-YKPEKMMEHL 1335 (1666)
T ss_pred h-cCHHHHHHHH
Confidence 4 3444444433
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.94 E-value=9.2e-06 Score=75.96 Aligned_cols=189 Identities=11% Similarity=0.015 Sum_probs=96.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006630 324 CRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403 (638)
Q Consensus 324 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 403 (638)
.-.|+...|+.+...+.+.. +.|...+..-..+|...|++..|+.=++...+.... +..++.-+-..+...|+.+.++
T Consensus 166 ~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL 243 (504)
T KOG0624|consen 166 SGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSL 243 (504)
T ss_pred hcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHH
Confidence 33455555555555555432 234444444455555555555555444444332111 3333333444444555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHH-----------H--HHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcC
Q 006630 404 ELMGEMRKIGCVPDVSNYNV-----------V--IRLACKLGELKEAVNVWNEMEAASLSPGT---DSFVVMVHGFLGQG 467 (638)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~-----------l--i~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g 467 (638)
...++..+. .||...+.. | +......+++.++....+...+..-.... ..+..+-.++...|
T Consensus 244 ~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~ 321 (504)
T KOG0624|consen 244 KEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDE 321 (504)
T ss_pred HHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccC
Confidence 555555443 232211100 0 11223445566666666665554311111 23334455566677
Q ss_pred CHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006630 468 CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519 (638)
Q Consensus 468 ~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 519 (638)
++.+|++...+.++.. +.+..++.--..+|.-...++.|+.=|+.+.+.
T Consensus 322 ~~~eAiqqC~evL~~d---~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 322 QFGEAIQQCKEVLDID---PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred CHHHHHHHHHHHHhcC---chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 7777777777777665 344667766677777777777777777777664
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.93 E-value=1.1e-05 Score=93.12 Aligned_cols=268 Identities=10% Similarity=-0.022 Sum_probs=109.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHhHHHHHHHHHHHc----CCC-CCHHhHHHHHHH
Q 006630 252 GWCKEGKLVEAKYVLVQMKDAGFEPDI----VVYNNLLSGYAQMGKMTDAFELLKEMRRK----GCD-PNANSYTVLIQA 322 (638)
Q Consensus 252 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~ 322 (638)
.+...|++++|...+++..+.-...+. ...+.+...+...|++++|...+++.... |.. ....++..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 334556666666665555442111111 12333444445556666665555554432 100 011223334445
Q ss_pred HHhcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC--CHHHHHHHHH
Q 006630 323 LCRMEKMEEANRAFVEMERS----GCE--A-DVVTYTTLISGFCKSRKIDRCYEILDSMIQR--GILP--NQLTYLHIML 391 (638)
Q Consensus 323 ~~~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p--~~~t~~~ll~ 391 (638)
+...|++++|...+++.... +.. + ....+..+...+...|++++|...+++.... ...+ ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 55556666665555554321 110 0 1122333334444556666665555554332 0111 1122222333
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC--CCCCHH--HH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHH
Q 006630 392 AHEKKEELEECVELMGEMRKIG--CVPDVS--NY--NVVIRLACKLGELKEAVNVWNEMEAASLSPGT---DSFVVMVHG 462 (638)
Q Consensus 392 ~~~~~g~~~~a~~~~~~~~~~~--~~~~~~--~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~ 462 (638)
.....|+.+.|.+.+....... ...... .. ...+..+...|+.+.|...+............ ..+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 4445556666555555543210 000000 00 00112233355555555555443321100000 012234444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC--CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006630 463 FLGQGCLIEACEYFKEMVGRGLL--SAP-QYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519 (638)
Q Consensus 463 ~~~~g~~~~A~~~~~~m~~~~~~--~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 519 (638)
+...|++++|..++.+....... ... ...+...+..++.+.|+.++|...+.++.+.
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55555555655555554432100 001 1123333444455556666665555555544
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.92 E-value=1.3e-05 Score=92.32 Aligned_cols=344 Identities=13% Similarity=-0.004 Sum_probs=216.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC------CCC--HHhHHHHHHH
Q 006630 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC------DPN--ANSYTVLIQA 322 (638)
Q Consensus 251 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~------~~~--~~~~~~li~~ 322 (638)
..+...|+++.+..++..+.......+..........+...|+++++...+......-- .+. ......+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34455677777777766552211111222233445556678999999999887754311 111 1122233445
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHH
Q 006630 323 LCRMEKMEEANRAFVEMERSGCEADV----VTYTTLISGFCKSRKIDRCYEILDSMIQR----GIL-PNQLTYLHIMLAH 393 (638)
Q Consensus 323 ~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~~t~~~ll~~~ 393 (638)
+...|++++|...+++....-...+. ..++.+...+...|++++|...+++.... |.. +...++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 66889999999999987753111221 34455666778899999999999888753 111 1123445566678
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCC--CHHHHHHHHHH
Q 006630 394 EKKEELEECVELMGEMRKI----GCV--P-DVSNYNVVIRLACKLGELKEAVNVWNEMEAAS--LSP--GTDSFVVMVHG 462 (638)
Q Consensus 394 ~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p--~~~~~~~li~~ 462 (638)
...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8899999999998876542 211 1 22334555666777899999999998875431 112 13345556677
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCcHH--H-H-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHH
Q 006630 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYG--T-L-KALLNSLLRAQKVEMAKDVWSCIVTKGCELN---VYAWTIWIHSL 535 (638)
Q Consensus 463 ~~~~g~~~~A~~~~~~m~~~~~~~~p~~~--~-~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~ 535 (638)
+...|++++|...+.++............ . . ...+..+...|+.+.|.+.+........... ...+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 88899999999999888553110011110 1 0 1112334568899999998776543211111 11134567788
Q ss_pred HccCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcc
Q 006630 536 FSNGHVKEACSYCLDMMDA----DVMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQ 594 (638)
Q Consensus 536 ~~~g~~~~A~~~~~~m~~~----~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 594 (638)
...|++++|..++++.... |..++ ..++..+..++...|+.++|...+.+++++.....
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 8999999999999988652 32222 23566777788899999999999999999875543
No 102
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.89 E-value=0.00012 Score=72.90 Aligned_cols=134 Identities=8% Similarity=0.096 Sum_probs=90.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHH
Q 006630 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVF 212 (638)
Q Consensus 133 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~ 212 (638)
..+-|..+|+.||+-+... ..+++++.++++....|. ++..|..-|..-.+.++++....+|.+.+..- .+...|
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~--s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW 89 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPS--SPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLW 89 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCC--CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHH
Confidence 3466899999999988766 899999999999876654 67789889999999999999999999987653 445556
Q ss_pred HHHHHHHHh-CCCHHH----HHHHHHHHhccC---CCCHHHHHHHHHH---------HHhcCCHHHHHHHHHHHHH
Q 006630 213 GCLLDALCK-NSSVKE----AAKLFDEMRERF---KPSLRHFTSLLYG---------WCKEGKLVEAKYVLVQMKD 271 (638)
Q Consensus 213 ~~li~~~~~-~g~~~~----A~~~~~~~~~~~---~~~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~ 271 (638)
..-++--.+ .|+... ..+.|+-...+. ..+-..|+..+.. |..+.+++...++++++..
T Consensus 90 ~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 90 KLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 655554333 233322 233344433321 2233446655543 3444566777788888775
No 103
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=1e-05 Score=83.84 Aligned_cols=259 Identities=12% Similarity=0.116 Sum_probs=159.4
Q ss_pred CHHHHHHHHH--HHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhC-C--------C
Q 006630 137 SYDVYRALIK--SLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKY-G--------C 205 (638)
Q Consensus 137 ~~~~~~~li~--~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g--------~ 205 (638)
|..+-.++++ .|...|+.+.|.+-.+.+. +...|..+.+.|.+.++++-|.-.+..|... | -
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 4455555554 4667788888877776654 3346788888888888888777666665432 1 1
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006630 206 EPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285 (638)
Q Consensus 206 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 285 (638)
.++ .+-....-.-...|.+++|+.+|.+.+. |..|=..|-..|.+++|+++-+.=-+..+ ..||....
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA 865 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYA 865 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHH
Confidence 121 1111222223456778888888877654 34455566777888888877654332221 23555555
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006630 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365 (638)
Q Consensus 286 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 365 (638)
.-+-..++.+.|++.|++.... --.++..|. .++.....+.+++. |...|.-...-+-..|+.+
T Consensus 866 ~~Lear~Di~~AleyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~Gemd 929 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMD 929 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccchH
Confidence 5566667777777777653211 111122111 23333344444433 4455555555556678888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006630 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME 445 (638)
Q Consensus 366 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (638)
.|+.+|..... |-+++...|-.|+.++|-++-++ .-|......|.++|-..|++.+|..+|.+..
T Consensus 930 aAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 930 AALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 88888876543 44566667778888888877654 3366667778888888899999988888765
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=7e-07 Score=89.23 Aligned_cols=252 Identities=12% Similarity=0.077 Sum_probs=166.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006630 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401 (638)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 401 (638)
-+.+.|++.+|.-.|+..++.. +-+...|--|.......++-..|+..+++..+.... |...+..|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 4567777888888888777663 335667777777777777777788877777775433 56666777777777777777
Q ss_pred HHHHHHHHHHCCCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006630 402 CVELMGEMRKIGCVP--------DVSNYNVVIRLACKLGELKEAVNVWNEM-EAASLSPGTDSFVVMVHGFLGQGCLIEA 472 (638)
Q Consensus 402 a~~~~~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~~~~p~~~~~~~li~~~~~~g~~~~A 472 (638)
|...++.-+...++- +...-.. ..+.....+....++|-++ ...+..+|...+..|...|--.|.+++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 777777665432110 0000000 0111112223344444444 3444447788888888888888889999
Q ss_pred HHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006630 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN-VYAWTIWIHSLFSNGHVKEACSYCLDM 551 (638)
Q Consensus 473 ~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 551 (638)
++.|+.++... |-|...|+.|...+....+.++|+..|.++++. .|+ +.++..|.-.|...|.++||.+.|-.+
T Consensus 450 iDcf~~AL~v~---Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 450 VDCFEAALQVK---PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHhcC---CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 99998888876 467788888888888888888899988888875 555 345556777788888899888888776
Q ss_pred HhCC---------CCCCHHHHHHHHHHHHhhcCHHHHHHH
Q 006630 552 MDAD---------VMPQPDTFAKLMRGLKKLYNRQIAAEI 582 (638)
Q Consensus 552 ~~~~---------~~p~~~t~~~ll~~~~~~g~~~~A~~~ 582 (638)
+... ..++..+|.+|=.++...++.|.+.++
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 5421 112335677776666666666644443
No 105
>PLN02789 farnesyltranstransferase
Probab=98.81 E-value=6.9e-06 Score=80.40 Aligned_cols=205 Identities=13% Similarity=0.122 Sum_probs=120.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH--HH
Q 006630 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE-ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL--KE 436 (638)
Q Consensus 360 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~ 436 (638)
..++.++|+.+..++++.... +..+|+.-...+...| .+++++..++.+.+.+ +.+..+|+.-.-.+.+.|+. ++
T Consensus 49 ~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHH
Confidence 345566666666666653221 2233333333444444 4566666666666553 34444555444344444542 56
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHc---CCH----HHH
Q 006630 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRA---QKV----EMA 509 (638)
Q Consensus 437 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~---g~~----~~A 509 (638)
+..+++++.+.+ +-|..+|+.....+...|+++++++.++++++.+. -+..+|+.....+.+. |.. ++.
T Consensus 127 el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~---~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 127 ELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV---RNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC---CchhHHHHHHHHHHhccccccccccHHHH
Confidence 677777777766 56777888887777788888888888888887763 5555665555444443 222 456
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006630 510 KDVWSCIVTKGCELNVYAWTIWIHSLFSN----GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572 (638)
Q Consensus 510 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 572 (638)
..+..+++...+ -|...|+.+...+... ++..+|.+++.+..+.+ ..+...+..|++.|..
T Consensus 203 l~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 203 LKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 666666666532 3566777777777663 34466777777766532 2244556666666654
No 106
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=5e-07 Score=90.23 Aligned_cols=227 Identities=11% Similarity=0.076 Sum_probs=176.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006630 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436 (638)
Q Consensus 357 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 436 (638)
-+.+.|++.+|.-.|+..++..+. +...|..|.......++-..|+..+.+..+.. +.+....-.|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 457889999999999999987654 67889889999999999999999999999875 6677888888889999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-----------HHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCC
Q 006630 437 AVNVWNEMEAASLSPGTDSFVVMV-----------HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK 505 (638)
Q Consensus 437 A~~~~~~m~~~~~~p~~~~~~~li-----------~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~ 505 (638)
|.+.++.-+....+ |..+. ..+.....+....++|-++...... .+++.....|.-.|.-.|+
T Consensus 372 Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~-~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPT-KIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCC-CCChhHHhhhHHHHhcchH
Confidence 99999987654311 11111 1111222334455566666554321 3666677777777888999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhhcCHHHHHHHHH
Q 006630 506 VEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPD-TFAKLMRGLKKLYNRQIAAEITE 584 (638)
Q Consensus 506 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~A~~~~~ 584 (638)
+++|.+.|+.++...+ -|...||-|...+....+.++|+..|+++++. .|+-+ ....|.-.|...|.+++|.+.+-
T Consensus 446 fdraiDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 9999999999988632 26788999999999999999999999999854 78754 57778889999999999999999
Q ss_pred HHHHHHHhcc
Q 006630 585 KVRKMAAERQ 594 (638)
Q Consensus 585 ~~~~~~p~~~ 594 (638)
.++.+.+.+.
T Consensus 523 ~AL~mq~ks~ 532 (579)
T KOG1125|consen 523 EALSMQRKSR 532 (579)
T ss_pred HHHHhhhccc
Confidence 9999988743
No 107
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.79 E-value=2e-07 Score=89.98 Aligned_cols=147 Identities=14% Similarity=0.125 Sum_probs=69.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCC
Q 006630 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF----LGQGC 468 (638)
Q Consensus 393 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~----~~~g~ 468 (638)
+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ .|. +...+..++ ...+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCchh
Confidence 34445555555544321 233444445555566666666666666655432 232 222222222 12234
Q ss_pred HHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH-HHHHHH
Q 006630 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHV-KEACSY 547 (638)
Q Consensus 469 ~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~ 547 (638)
+.+|..+|+++.+.. .++..+++.+..+....|++++|.+++.+....+. -+..+...++.+....|+. +.+.++
T Consensus 183 ~~~A~y~f~El~~~~---~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 183 YQDAFYIFEELSDKF---GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp CCHHHHHHHHHHCCS-----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 556666666655442 24555555555556666666666666665554421 1344444555555555555 344445
Q ss_pred HHHHH
Q 006630 548 CLDMM 552 (638)
Q Consensus 548 ~~~m~ 552 (638)
+.++.
T Consensus 259 l~qL~ 263 (290)
T PF04733_consen 259 LSQLK 263 (290)
T ss_dssp HHHCH
T ss_pred HHHHH
Confidence 55544
No 108
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=7.3e-06 Score=84.89 Aligned_cols=346 Identities=14% Similarity=0.153 Sum_probs=199.0
Q ss_pred HHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcc----------CCCCHHHHHHHHHHH
Q 006630 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER----------FKPSLRHFTSLLYGW 253 (638)
Q Consensus 184 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~~~~li~~~ 253 (638)
|...|+++.|.+-.+.+. +..+|..+..+|.+..++|-|.-.+..|... ..++ ..-.......
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 455677887777666543 3467788888888877777776666555321 1111 1112222333
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 006630 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333 (638)
Q Consensus 254 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 333 (638)
...|.+++|+.+|++-++ |..|=+.|-..|.+++|.++-+.--+- . =..||......+-..++.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHHHH
Confidence 456777777777777654 334445566677777777765432211 1 1234555555555667777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006630 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413 (638)
Q Consensus 334 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 413 (638)
+.|++.. .+--..+..|. .++.....+.+.+ .|...|..-...+...|+++.|+.+|.....
T Consensus 879 eyyEK~~----~hafev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-- 940 (1416)
T KOG3617|consen 879 EYYEKAG----VHAFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAKD-- 940 (1416)
T ss_pred HHHHhcC----ChHHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhhh--
Confidence 7776543 11111111111 1122222222222 2445556666667788999999999988764
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CC--CCc
Q 006630 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL--LS--APQ 489 (638)
Q Consensus 414 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~--~p~ 489 (638)
|-++++..|-.|+.++|-++-++-. |....-.|...|...|++.+|..+|.+.....- .. ..+
T Consensus 941 -------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd 1007 (1416)
T KOG3617|consen 941 -------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEND 1007 (1416)
T ss_pred -------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5677787888999999998877643 445677789999999999999999987753210 00 000
Q ss_pred HHHHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--------HHHhCCCCC-
Q 006630 490 YGTLKALLNSLL--RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCL--------DMMDADVMP- 558 (638)
Q Consensus 490 ~~~~~~ll~~~~--~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~~~~p- 558 (638)
.-..|.+.+. ...+.-.|-++|++.-. ....-+..|.++|.+.+|+++-= +++..++.|
T Consensus 1008 --~~d~L~nlal~s~~~d~v~aArYyEe~g~--------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~ 1077 (1416)
T KOG3617|consen 1008 --MKDRLANLALMSGGSDLVSAARYYEELGG--------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG 1077 (1416)
T ss_pred --HHHHHHHHHhhcCchhHHHHHHHHHHcch--------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC
Confidence 0001122222 22233344455544311 11122345778888888876521 123333333
Q ss_pred -CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 006630 559 -QPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589 (638)
Q Consensus 559 -~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 589 (638)
|+...+.-.+.+....++++|..++-.+.+.
T Consensus 1078 sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~ 1109 (1416)
T KOG3617|consen 1078 SDPKLLRRCADFFENNQQYEKAVNLLCLAREF 1109 (1416)
T ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5666777777777778888888777666543
No 109
>PLN02789 farnesyltranstransferase
Probab=98.79 E-value=8.4e-06 Score=79.78 Aligned_cols=215 Identities=7% Similarity=0.031 Sum_probs=151.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 006630 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASAR-MVKKAIEVLDEMPKYGCEPDEFVFGCLLDA 218 (638)
Q Consensus 140 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 218 (638)
++..+-.++...+..++|+.+++++...+|. +..+|+.-...+...| .+++++..++.+.+.. +.+..+|+.....
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~--~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPG--NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCch--hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 4445555667778899999999999988876 5566766666666666 5789999999888764 4556678766666
Q ss_pred HHhCCCH--HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CC
Q 006630 219 LCKNSSV--KEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM---GK 293 (638)
Q Consensus 219 ~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---g~ 293 (638)
+.+.|.. +++..+++.+.+..+.|..+|+.....+...|+++++++.++++++.+ .-|...|+.....+.+. |.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhcccccc
Confidence 6666653 677888888888788899999999999999999999999999999876 44666777766555544 22
Q ss_pred H----hHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006630 294 M----TDAFELLKEMRRKGCDPNANSYTVLIQALCRM----EKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360 (638)
Q Consensus 294 ~----~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 360 (638)
. +...+...+++.... -|...|+.+...+... +...+|.+.+.+..+.+ ..+......|+..|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 2 355666656665533 3667777777777662 33455777777765543 3355566666666664
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.76 E-value=9.3e-06 Score=88.95 Aligned_cols=240 Identities=8% Similarity=0.078 Sum_probs=184.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006630 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQR-GILPN---QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420 (638)
Q Consensus 345 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 420 (638)
+.+...|-..|....+.++.++|.+++++.+.. ++.-. ...|.++++.-..-|.-+...++|+++-+. -....+
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 445678888888889999999999999998764 22211 235666666666667888889999998874 233567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q 006630 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500 (638)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~ 500 (638)
|..|...|.+.+.+++|.++|+.|.++- ......|...+..+.++++-++|..++.+++..-.. ..........+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk-~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK-QEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch-hhhHHHHHHHHHHH
Confidence 8899999999999999999999998763 456679999999999999999999999999876421 11222333444555
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhhcCHHH
Q 006630 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP--DTFAKLMRGLKKLYNRQI 578 (638)
Q Consensus 501 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~g~~~~ 578 (638)
.+.|+.+.++.+|+..+.. .+.....|+.+++.-.++|+.+.+..+|++.+..++.|-. ..|...+..-..+||-+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 6899999999999999876 3336789999999999999999999999999998877753 446666666666677777
Q ss_pred HHHHHHHHHHH
Q 006630 579 AAEITEKVRKM 589 (638)
Q Consensus 579 A~~~~~~~~~~ 589 (638)
.+..-.++.+.
T Consensus 1690 vE~VKarA~EY 1700 (1710)
T KOG1070|consen 1690 VEYVKARAKEY 1700 (1710)
T ss_pred HHHHHHHHHHH
Confidence 76666666553
No 111
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.72 E-value=2.3e-06 Score=81.24 Aligned_cols=59 Identities=14% Similarity=0.147 Sum_probs=30.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 006630 531 WIHSLFSNGHVKEACSYCLDMMDAD-VMP-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589 (638)
Q Consensus 531 li~~~~~~g~~~~A~~~~~~m~~~~-~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 589 (638)
+...+.+.|++++|+..+++.++.. -.| ....+..+..++.+.|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3344555566666666665555431 011 1334555555555566666666555554443
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=9.5e-07 Score=90.53 Aligned_cols=217 Identities=11% Similarity=0.057 Sum_probs=161.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006630 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464 (638)
Q Consensus 385 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 464 (638)
.-..+...+...|-...|..+++++. .|..+|.+|+..|+..+|..+..+-.++ +||...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33445566777888888888887765 3556778888889888888888887773 688888888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 006630 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544 (638)
Q Consensus 465 ~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 544 (638)
....+++|.++++.....- -..+.....+.++++++.+.|+.-.+.. .--..+|-....+..+.++++.|
T Consensus 469 d~s~yEkawElsn~~sarA---------~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISARA---------QRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ChHHHHHHHHHhhhhhHHH---------HHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHH
Confidence 8888888888887654331 0111111234688888888888777652 22466788888888888999999
Q ss_pred HHHHHHHHhCCCCCCHH-HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhHHHHHhhhhhh
Q 006630 545 CSYCLDMMDADVMPQPD-TFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLKEKAKKQVDGR 619 (638)
Q Consensus 545 ~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~~~~~~~~~~ 619 (638)
.+.|...+.. .||.. .|+++-.+|.+.++..+|...+++++|.+-++.... -+..+.|.|++|.+++.++.+.
T Consensus 539 v~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 539 VKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 9888887754 67654 499999999999999999999999998886666665 2556789999999998887776
Q ss_pred hhhhh
Q 006630 620 KRRAR 624 (638)
Q Consensus 620 ~~~~~ 624 (638)
.++.+
T Consensus 617 ~~~~~ 621 (777)
T KOG1128|consen 617 RKKYK 621 (777)
T ss_pred hhhcc
Confidence 66544
No 113
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.69 E-value=0.00052 Score=68.57 Aligned_cols=443 Identities=11% Similarity=0.064 Sum_probs=265.4
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCC
Q 006630 163 EMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPS 242 (638)
Q Consensus 163 ~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 242 (638)
+-.+.+|. |..+|..||+-+... .++++...++++... ++-....|..-|..-.+..+++..+.+|.+...+ ..+
T Consensus 11 ~rie~nP~--di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk-vLn 85 (656)
T KOG1914|consen 11 ERIEENPY--DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK-VLN 85 (656)
T ss_pred HHHhcCCc--cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-Hhh
Confidence 33445554 889999999977655 999999999998754 3455688999999999999999999999987654 236
Q ss_pred HHHHHHHHHHHHhc-CCHHH----HHHHHHH-HHHCCCCCCH-HHHHHHHHH---------HHHcCCHhHHHHHHHHHHH
Q 006630 243 LRHFTSLLYGWCKE-GKLVE----AKYVLVQ-MKDAGFEPDI-VVYNNLLSG---------YAQMGKMTDAFELLKEMRR 306 (638)
Q Consensus 243 ~~~~~~li~~~~~~-g~~~~----A~~~~~~-m~~~g~~p~~-~~~~~ll~~---------~~~~g~~~~a~~~~~~~~~ 306 (638)
+..|..-+..--+. |+... ..+.|+- +.+.|+.+-. ..|+..+.. +....+++...++++++..
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 88888877654433 33322 2223332 2344544322 234444432 3344456667777777765
Q ss_pred cCCCCCHHhHH------HHHHHH-------HhcCCHHHHHHHHHHHHH--cCCCCCH---------------HHHHHHHH
Q 006630 307 KGCDPNANSYT------VLIQAL-------CRMEKMEEANRAFVEMER--SGCEADV---------------VTYTTLIS 356 (638)
Q Consensus 307 ~g~~~~~~~~~------~li~~~-------~~~g~~~~A~~~~~~m~~--~g~~~~~---------------~~~~~li~ 356 (638)
.-+.-=...|+ .=|+-. -+...+..|.++++++.. .|+..+. ..|-.+|.
T Consensus 166 tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~ 245 (656)
T KOG1914|consen 166 TPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK 245 (656)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH
Confidence 42221111221 111111 122345667777777653 2332221 12444443
Q ss_pred HHHhcCCH--------HHHHHHHHHHH-HCCCCCCHHHHH-H----HHHHHHhcCC-------HHHHHHHHHHHHHCCCC
Q 006630 357 GFCKSRKI--------DRCYEILDSMI-QRGILPNQLTYL-H----IMLAHEKKEE-------LEECVELMGEMRKIGCV 415 (638)
Q Consensus 357 ~~~~~g~~--------~~A~~~~~~m~-~~~~~p~~~t~~-~----ll~~~~~~g~-------~~~a~~~~~~~~~~~~~ 415 (638)
-=-.++-- ....-.+++.. --+..|+..-.. . .-+.+...|+ .+++..+++.....-..
T Consensus 246 wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~ 325 (656)
T KOG1914|consen 246 WEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLK 325 (656)
T ss_pred HHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 21111110 11111222222 223344332111 1 1112333343 45566666665544333
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC-cH
Q 006630 416 PDVSNYNVVIRLACKLG---ELKEAVNVWNEMEAA-SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP-QY 490 (638)
Q Consensus 416 ~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p-~~ 490 (638)
.+..+|..+.+.--..- ..+..-.+++++... ...|+. +|...++.-.+..-++.|..+|.++.+.+. .+ +.
T Consensus 326 ~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r--~~hhV 402 (656)
T KOG1914|consen 326 ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKR--TRHHV 402 (656)
T ss_pred HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccC--Ccchh
Confidence 44555554443211111 245555666666543 233443 778888888888889999999999999875 34 34
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHH
Q 006630 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ--PDTFAKLMR 568 (638)
Q Consensus 491 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~ 568 (638)
...++++.- ...++.+-|.++|+.-+++ +.-+...-...++-+...++-..|..+|++.+..++.|| ..+|..++.
T Consensus 403 fVa~A~mEy-~cskD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 403 FVAAALMEY-YCSKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE 480 (656)
T ss_pred hHHHHHHHH-HhcCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH
Confidence 455555554 4568899999999988776 233445557788889999999999999999998866666 467999999
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHhccc--------ccchhhhhhhhhhHHHHHhh
Q 006630 569 GLKKLYNRQIAAEITEKVRKMAAERQI--------TFKMYKRRGERDLKEKAKKQ 615 (638)
Q Consensus 569 ~~~~~g~~~~A~~~~~~~~~~~p~~~~--------~~~~y~~~g~~~~A~~~~~~ 615 (638)
--..-||+....++-++-...-|.+.. .++.|.-++.+..-..-++.
T Consensus 481 yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~ 535 (656)
T KOG1914|consen 481 YESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKF 535 (656)
T ss_pred HHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHh
Confidence 999999999999998888777773211 13677777666654444443
No 114
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.68 E-value=2e-05 Score=86.49 Aligned_cols=205 Identities=14% Similarity=0.145 Sum_probs=139.6
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc-CCC---CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006630 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK-GCD---PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY 351 (638)
Q Consensus 276 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 351 (638)
-....|-..|......++.+.|.++.++.+.. ++. --...|.++++.-..-|.-+...++|+++.+.. -....|
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 34456777777777777777777777777654 111 123456666666666677777778888777642 123556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHH
Q 006630 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC-VPDVSNYNVVIRLACK 430 (638)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~ 430 (638)
..|...|.+.+++++|.++|+.|.++ +.-....|...+..+.+..+-+.|..++.+..+.-. ........-.+.+-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 77777788888888888888888775 223556677777777777777778888777766411 1133444455566677
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006630 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484 (638)
Q Consensus 431 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 484 (638)
.|+.+.+..+|+...... |.-...|+..|+.-.++|..+.+..+|++....++
T Consensus 1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 888888888888776654 44556788888888888888888888888887776
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=1.9e-06 Score=88.41 Aligned_cols=219 Identities=14% Similarity=0.054 Sum_probs=158.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006630 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429 (638)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 429 (638)
.-..+...+...|-...|+.+|++.. .+..++.+|...|+..+|..+..+-.+. +||...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33456667777888888888887654 3555677788888888888887777663 778888877777776
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHH
Q 006630 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509 (638)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A 509 (638)
...-+++|.++++....+ .-..+......+++++++.+.|+.-.+.. +-...+|-.+..+..+.++++.|
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n---plq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN---PLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC---ccchhHHHhccHHHHHHhhhHHH
Confidence 666677888887765543 11222222334678888888888877766 35566777777777788888888
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 006630 510 KDVWSCIVTKGCEL-NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588 (638)
Q Consensus 510 ~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 588 (638)
.+.|...+.. .| +...||.+-.+|.+.|+..+|...+.+..+.+ .-+...|.+.+-...+.|.++.|.+++.++.+
T Consensus 539 v~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 539 VKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 8888887775 34 45678888888888888888888888887765 44445577777777788888888888888877
Q ss_pred HHHh
Q 006630 589 MAAE 592 (638)
Q Consensus 589 ~~p~ 592 (638)
+.-+
T Consensus 616 ~~~~ 619 (777)
T KOG1128|consen 616 LRKK 619 (777)
T ss_pred hhhh
Confidence 6544
No 116
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.65 E-value=0.0012 Score=70.08 Aligned_cols=454 Identities=13% Similarity=0.117 Sum_probs=213.7
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHH
Q 006630 150 KMRKFGAVWALMEEMRKEKPQLITTEVFVILMRR--FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227 (638)
Q Consensus 150 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~--~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 227 (638)
..+++..|++....+.+..|..+ +..++++ +.+.|+.++|..+++.....+. .|..|...+-..|.+.|+.++
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~----~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNAL----YAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhH
Confidence 44566677777766666665432 2223333 2466777777766666554442 266677777777777777777
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----------CHhHH
Q 006630 228 AAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG----------KMTDA 297 (638)
Q Consensus 228 A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----------~~~~a 297 (638)
|..+++.....+|. ......+..+|.+.+.+.+-.+.--+|-+. ++-+...+=++++.+...- -..-|
T Consensus 96 ~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 96 AVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 77777776665443 555666666666666665444333333332 2233344434444433321 12234
Q ss_pred HHHHHHHHHcC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 298 FELLKEMRRKG-CDPNANSYTVLIQALCRMEKMEEANRAFV-EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375 (638)
Q Consensus 298 ~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 375 (638)
.+.++.+.+.+ ..-+..-...-....-..|.+++|.+++. ...+.-...+...-+--+..+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 55555555443 11111112222233445567777777773 33332222333444455566666777777777777777
Q ss_pred HCCCCCCHHHHHH-----HHH--------HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HHcCCHHHHHH
Q 006630 376 QRGILPNQLTYLH-----IML--------AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA---CKLGELKEAVN 439 (638)
Q Consensus 376 ~~~~~p~~~t~~~-----ll~--------~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~ 439 (638)
..|.. |..+|.- +-. ++...+..+...+...+..... ....|-+-+.++ ..-|+.+++..
T Consensus 254 ~k~~D-dy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~ 329 (932)
T KOG2053|consen 254 EKGND-DYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLS 329 (932)
T ss_pred HhCCc-chHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHH
Confidence 66543 2111111 111 1111223333333333333221 111122222222 33466666554
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHH---HHHHHHHHHHHcCCH-----HHHHH
Q 006630 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG---TLKALLNSLLRAQKV-----EMAKD 511 (638)
Q Consensus 440 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~---~~~~ll~~~~~~g~~-----~~A~~ 511 (638)
.|-+- .|-.| .|..=+..|...=..++-..++...........-+.. .....+..-...|.+ +.-..
T Consensus 330 ~y~~k--fg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a 404 (932)
T KOG2053|consen 330 YYFKK--FGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILA 404 (932)
T ss_pred HHHHH--hCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHH
Confidence 44221 11111 1111122222222222223333332222100000000 011111111122211 11122
Q ss_pred HHHHHH---Hc------CCCCC---------HHHHHHHHHHHHccCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006630 512 VWSCIV---TK------GCELN---------VYAWTIWIHSLFSNGHVK---EACSYCLDMMDADVMPQPDTFAKLMRGL 570 (638)
Q Consensus 512 ~~~~~~---~~------~~~p~---------~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 570 (638)
++.+.. ++ ++-|+ .-+.+.|++.+.+.++.. +|+-+++.-+... .-|..+-..++..|
T Consensus 405 ~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY 483 (932)
T KOG2053|consen 405 YVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIY 483 (932)
T ss_pred HHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHH
Confidence 221111 11 22233 224567788888888765 5555555544431 23455556778888
Q ss_pred HhhcCHHHHHHHHHHHHHHHH-hcc---cccchhhhhhhhhhHHHHHhhhhhhh
Q 006630 571 KKLYNRQIAAEITEKVRKMAA-ERQ---ITFKMYKRRGERDLKEKAKKQVDGRK 620 (638)
Q Consensus 571 ~~~g~~~~A~~~~~~~~~~~p-~~~---~~~~~y~~~g~~~~A~~~~~~~~~~~ 620 (638)
.-.|-...|.+.++.+--.+- .++ ..+..+...|+|.-+...+...-.-.
T Consensus 484 ~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkfy 537 (932)
T KOG2053|consen 484 SYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEHLKFY 537 (932)
T ss_pred HHhcCChhHHHHHHhcchHHhhhccchHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 888999999888875522222 222 22467788899999988887744433
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.64 E-value=5.1e-06 Score=78.83 Aligned_cols=193 Identities=12% Similarity=0.058 Sum_probs=138.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCC-CC-
Q 006630 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLIT-TEVFVILMRRFASARMVKKAIEVLDEMPKYGCE-PD- 208 (638)
Q Consensus 132 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-~~- 208 (638)
|........+-.+...+.+.|++++|...|+++....|..+. ..++..+..++...|++++|+..++.+.+.... +.
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 344567778888999999999999999999999988765332 346777888999999999999999999875311 11
Q ss_pred HHHHHHHHHHHHhC--------CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006630 209 EFVFGCLLDALCKN--------SSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV 280 (638)
Q Consensus 209 ~~~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 280 (638)
..++..+...+.+. |+.++|.+.|+.+....|.+...+..+...... .. ... ..
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~----~~------~~~--------~~ 168 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL----RN------RLA--------GK 168 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH----HH------HHH--------HH
Confidence 12455566666654 788999999999987767666555443322110 00 000 01
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006630 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGC--DPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342 (638)
Q Consensus 281 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (638)
...+...+.+.|++.+|...++...+... +.....+..+...+.+.|++++|..+++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 12455678888999999999998887632 123467888889999999999999988888765
No 118
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=2.3e-05 Score=70.51 Aligned_cols=196 Identities=20% Similarity=0.171 Sum_probs=138.7
Q ss_pred CHHHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006630 398 ELEECVELMGEMRK---IG-CVPDVS-NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472 (638)
Q Consensus 398 ~~~~a~~~~~~~~~---~~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 472 (638)
+.++..+++..+.. .| ..++.. .|..++-+...+|+.+.|...++.+...- +.+...-..-...+-..|++++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhH
Confidence 34444555444432 12 334432 34444556667889999999999887763 32222222223345567899999
Q ss_pred HHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006630 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552 (638)
Q Consensus 473 ~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 552 (638)
+++++.+++.+ +.+..++..=+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.+++++
T Consensus 106 ~e~y~~lL~dd---pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 106 IEYYESLLEDD---PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHhccC---cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 99999999887 456667766666677788888999888888776 56699999999999999999999999999987
Q ss_pred hCCCCC-CHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHhcccc-cchh
Q 006630 553 DADVMP-QPDTFAKLMRGLKKL---YNRQIAAEITEKVRKMAAERQIT-FKMY 600 (638)
Q Consensus 553 ~~~~~p-~~~t~~~ll~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~-~~~y 600 (638)
-. .| ++..+..+...+... .+++.|+++++++++++|++... +.+|
T Consensus 182 l~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 182 LI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred Hc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHH
Confidence 53 45 455666666666544 48899999999999999976655 3444
No 119
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=4.5e-05 Score=69.24 Aligned_cols=157 Identities=17% Similarity=0.141 Sum_probs=71.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHH----H
Q 006630 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL----R 502 (638)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~----~ 502 (638)
.|++.|++++|++...... +......=+..+.+..+++-|.+.+++|.+. .+..|++-|..++. .
T Consensus 117 i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-----ded~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI-----DEDATLTQLAQAWVKLATG 185 (299)
T ss_pred HhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----chHHHHHHHHHHHHHHhcc
Confidence 4555555555555544411 1112222233334444555555555555443 23334444444433 2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhc-CHHHHHH
Q 006630 503 AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLY-NRQIAAE 581 (638)
Q Consensus 503 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g-~~~~A~~ 581 (638)
.+++..|.-+|+++.++ ..|+..+.+-+..++...|++++|..++++.+... .-++.|+.+++-.....| +.+--.+
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHH
Confidence 23455555555555443 34555555555555555555555555555555432 223444444444333333 2233344
Q ss_pred HHHHHHHHHHhcccc
Q 006630 582 ITEKVRKMAAERQIT 596 (638)
Q Consensus 582 ~~~~~~~~~p~~~~~ 596 (638)
....+....|+++-.
T Consensus 264 ~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 264 NLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHHhcCCcchHH
Confidence 555555555554444
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.62 E-value=8.7e-06 Score=74.18 Aligned_cols=125 Identities=11% Similarity=0.033 Sum_probs=73.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HccCC--HH
Q 006630 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL-FSNGH--VK 542 (638)
Q Consensus 466 ~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~--~~ 542 (638)
.++.++++..++..+... +.+...|..+...|...|++++|...|+++.+.... +...+..+..++ ...|+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~~~---P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN---PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcH
Confidence 445555666666655554 355556666666666666666666666666655322 455555555543 45555 36
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 543 EACSYCLDMMDADVMP-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 543 ~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
+|.+++++.++. .| +...+..+...+...|++++|+..++++++++|.+..-
T Consensus 128 ~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 128 QTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 666666666654 33 34445556666666666666666666666666654433
No 121
>PF12854 PPR_1: PPR repeat
Probab=98.60 E-value=7e-08 Score=59.16 Aligned_cols=32 Identities=53% Similarity=1.001 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 006630 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235 (638)
Q Consensus 204 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 235 (638)
|+.||..+|++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56777777777777777777777777777766
No 122
>PF12854 PPR_1: PPR repeat
Probab=98.59 E-value=6.9e-08 Score=59.18 Aligned_cols=32 Identities=56% Similarity=1.206 Sum_probs=15.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006630 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374 (638)
Q Consensus 343 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 374 (638)
|+.||..+||+||.+||+.|++++|+++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 123
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.58 E-value=1.8e-06 Score=74.37 Aligned_cols=100 Identities=13% Similarity=-0.017 Sum_probs=53.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcC
Q 006630 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN 575 (638)
Q Consensus 496 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 575 (638)
+..++...|++++|...|+.++... +.+...|..+..++.+.|++++|+..|++.+... ..+...+..+..++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3444555555555555555555442 1244555555555555555555555555555431 2234445555555555556
Q ss_pred HHHHHHHHHHHHHHHHhccccc
Q 006630 576 RQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 576 ~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
+++|+..++++++..|+++..+
T Consensus 108 ~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 108 PGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred HHHHHHHHHHHHHhCCCChHHH
Confidence 6666666666655555555443
No 124
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.55 E-value=2.1e-05 Score=71.63 Aligned_cols=124 Identities=10% Similarity=0.132 Sum_probs=94.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHH-HHcCC--HH
Q 006630 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL-LRAQK--VE 507 (638)
Q Consensus 431 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~-~~~g~--~~ 507 (638)
.++.+++...++...+.+ +.|...|..+...|...|++++|...|++..... +.+...+..+..++ ...|+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~---P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR---GENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCCCCcH
Confidence 566677777777777766 6778888888888888888888888888888876 35666677777654 56666 48
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 006630 508 MAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560 (638)
Q Consensus 508 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 560 (638)
+|.++++++++.+.. +...+..+...+...|++++|+..|+++++.. .|+.
T Consensus 128 ~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~ 178 (198)
T PRK10370 128 QTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRV 178 (198)
T ss_pred HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCc
Confidence 888888888887433 66778888888888888888888888887643 4444
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.54 E-value=1.9e-05 Score=71.75 Aligned_cols=160 Identities=15% Similarity=0.074 Sum_probs=125.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC
Q 006630 178 VILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG 257 (638)
Q Consensus 178 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g 257 (638)
..+-..+...|+-+....+....... .+.|....+.++....+.|++..|...|.+.....|+|..+|+.+..+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 44556666677777777776664432 24566677778888888999999999999988888889999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 006630 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337 (638)
Q Consensus 258 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 337 (638)
++++|..-|.+..+.- .-+...++.+.-.+.-.|+++.|..++......+.. |..+-..+.......|++++|..+-.
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 9999999998888764 345667788888888889999999988888776433 66777778888888899999888876
Q ss_pred HHH
Q 006630 338 EME 340 (638)
Q Consensus 338 ~m~ 340 (638)
+-.
T Consensus 227 ~e~ 229 (257)
T COG5010 227 QEL 229 (257)
T ss_pred ccc
Confidence 644
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.54 E-value=3.6e-05 Score=83.19 Aligned_cols=133 Identities=11% Similarity=0.043 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006630 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531 (638)
Q Consensus 452 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 531 (638)
+...+..|.....+.|++++|..+++...+.. +.+......+...+.+.+++++|...+++....... +......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~---Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF---PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC---CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 34455555555555555555555555555543 223334444455555555555555555555544211 33344444
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 006630 532 IHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590 (638)
Q Consensus 532 i~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 590 (638)
..++.+.|++++|..+|+++... .|+ ..++..+..++.+.|+.+.|...++++++..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 55555555555555555555542 222 4445555555555555555555555555544
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.51 E-value=3.2e-05 Score=70.30 Aligned_cols=159 Identities=11% Similarity=0.044 Sum_probs=107.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHH
Q 006630 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501 (638)
Q Consensus 422 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~ 501 (638)
..+-..+...|+-+....+........ +.|.......+....+.|++.+|+..|.+..... ++|..+|+.+.-+|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~---p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA---PTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC---CCChhhhhHHHHHHH
Confidence 444555666677777766666654432 3444555557777777777777777777777665 577777777777777
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHH
Q 006630 502 RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAE 581 (638)
Q Consensus 502 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~ 581 (638)
+.|+.++|+.-|.+..+.. .-+....+.+.-.|.-.|+.+.|..++......+ .-|..+-..+..+....|+++.|+.
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 146 QLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHh
Confidence 7777777777777777762 2245566777777777778888877777766543 2355556666667777777777777
Q ss_pred HHHHH
Q 006630 582 ITEKV 586 (638)
Q Consensus 582 ~~~~~ 586 (638)
+...-
T Consensus 224 i~~~e 228 (257)
T COG5010 224 IAVQE 228 (257)
T ss_pred hcccc
Confidence 76543
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.48 E-value=2.1e-05 Score=84.94 Aligned_cols=150 Identities=13% Similarity=0.120 Sum_probs=130.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHH
Q 006630 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFV 211 (638)
Q Consensus 132 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~ 211 (638)
..|.+++.++-.|..+..+.|.+++|..+++......|. +...+..+...+.+.+++++|+..+++..... +-+...
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd--~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~ 156 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD--SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSARE 156 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHH
Confidence 467888999999999999999999999999999999886 67788889999999999999999999998774 445677
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006630 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285 (638)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 285 (638)
.+.+..++.+.|++++|..+|+++....+.+..++..+...+-..|+.++|...|++..+.- .|....|+..+
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 78888889999999999999999988767779999999999999999999999999998753 34445555443
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.47 E-value=8.5e-05 Score=81.09 Aligned_cols=170 Identities=11% Similarity=0.084 Sum_probs=113.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHH
Q 006630 171 LITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDE-FVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSL 249 (638)
Q Consensus 171 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 249 (638)
+.+...+..|+..+...+++++|.++.+...+. .|+. ..|..+...+...++.+++..+ .+..
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~------------ 91 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLID------------ 91 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhh------------
Confidence 346677888899888899999999998866655 4444 3444444466667776665554 3322
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH
Q 006630 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKM 329 (638)
Q Consensus 250 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 329 (638)
......++.-...+...|.+. .-+...+-.+..+|-+.|+.+++..+++++++.. +-|..+.|.+...|... ++
T Consensus 92 --~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 92 --SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred --hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 222223332223333344433 2344577778888888899999999999888876 34778888888888888 88
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 330 EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377 (638)
Q Consensus 330 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 377 (638)
++|.+++.+.... |...+++.++.+++..+...
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 8888888887643 45555666667766666654
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.45 E-value=5.6e-06 Score=70.80 Aligned_cols=117 Identities=15% Similarity=0.115 Sum_probs=85.0
Q ss_pred HHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006630 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554 (638)
Q Consensus 475 ~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 554 (638)
.+++++... +.+......+...+...|++++|.+.|+.+...+ +.+...|..+..++...|++++|...+++.++.
T Consensus 5 ~~~~~l~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGLD---SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcCC---hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555543 2334455666677778888888888888887753 336677778888888888888888888887765
Q ss_pred CCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 555 DVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 555 ~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
+ ..+...+..+...+...|+++.|...++++++.+|++...
T Consensus 81 ~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 D-PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred C-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 3 3346667777778888888888888888888888877664
No 131
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.45 E-value=1.8e-05 Score=68.15 Aligned_cols=121 Identities=9% Similarity=-0.066 Sum_probs=86.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006630 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518 (638)
Q Consensus 439 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 518 (638)
.+|++..+.+ |+ .+..+...+...|++++|...|+.+.... +.+...+..+..++...|++++|...|+.+..
T Consensus 14 ~~~~~al~~~--p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLSVD--PE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ---PWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHcC--HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4455555432 33 35556777788888888888888888776 46677788888888888888888888888887
Q ss_pred cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 006630 519 KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP-DTFAKLMRG 569 (638)
Q Consensus 519 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~ 569 (638)
.. +.+...|..+..++...|++++|+..|++.++. .|+. ..|.....+
T Consensus 87 l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~~~~~~~~~~ 135 (144)
T PRK15359 87 LD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADASWSEIRQNA 135 (144)
T ss_pred cC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHH
Confidence 63 336777888888888888888888888888764 4543 334333333
No 132
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.42 E-value=0.00014 Score=79.56 Aligned_cols=130 Identities=14% Similarity=0.092 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCC-------
Q 006630 136 HSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPD------- 208 (638)
Q Consensus 136 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~------- 208 (638)
.+..+|..|+..|-..+++++|.++.+......|..+.. |..+...+.+.++..++..+ .+... +..+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~--yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve 103 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISA--LYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVE 103 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceeh--HHHHHHHHHhhcchhhhhhh--hhhhh-cccccchhHHH
Confidence 466789999999999999999999999888887765443 33333356666666665555 22211 0111
Q ss_pred ------------HHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 209 ------------EFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271 (638)
Q Consensus 209 ------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 271 (638)
...+..|..+|-+.|+.++|..+++++.+..+.|+.+.|.+...|... ++++|.+++.+.+.
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 134444555555556666666666666555555666666666666666 66666666555543
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.41 E-value=0.00017 Score=71.35 Aligned_cols=139 Identities=16% Similarity=0.109 Sum_probs=87.1
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc-HHHHHHHHHHHHHcCCH
Q 006630 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ-YGTLKALLNSLLRAQKV 506 (638)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~-~~~~~~ll~~~~~~g~~ 506 (638)
+...|++++|+..++.+...- +.|...+....+.+...|+..+|.+.++.++... |+ ......+.+++.+.|++
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~----P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD----PNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----CCccHHHHHHHHHHHhcCCh
Confidence 445677777777777766553 4444455555666777777777777777776664 33 44455566667777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 006630 507 EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586 (638)
Q Consensus 507 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~ 586 (638)
.+|+.+++...... +-|...|..|..+|...|+..+|.....+ .+...|+++.|...+..+
T Consensus 391 ~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 391 QEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHH
Confidence 77777777666552 33666777777777777776666554332 344456677777666666
Q ss_pred HHHH
Q 006630 587 RKMA 590 (638)
Q Consensus 587 ~~~~ 590 (638)
.+..
T Consensus 452 ~~~~ 455 (484)
T COG4783 452 SQQV 455 (484)
T ss_pred HHhc
Confidence 6554
No 134
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=0.00025 Score=64.59 Aligned_cols=141 Identities=11% Similarity=0.135 Sum_probs=80.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----
Q 006630 390 MLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG---- 465 (638)
Q Consensus 390 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---- 465 (638)
...|.+.+++++|.+...... +....-.=+..+.+..+++-|.+.++.|.+-+ +..+.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence 345666666666666655411 11222222334556666777777777776532 33455555554433
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 006630 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543 (638)
Q Consensus 466 ~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 543 (638)
.+...+|.-+|++|.++- +|+..+.+....++...|++++|..+++.++.+... ++.+...++-+-...|...+
T Consensus 186 gek~qdAfyifeE~s~k~---~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKT---PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAE 259 (299)
T ss_pred chhhhhHHHHHHHHhccc---CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChH
Confidence 345667777777776654 466677777777777777777777777777665322 45555555544444554433
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=0.0004 Score=62.75 Aligned_cols=186 Identities=15% Similarity=0.138 Sum_probs=126.8
Q ss_pred CCHHHHHHHHHhchh---CC-CCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHH
Q 006630 188 RMVKKAIEVLDEMPK---YG-CEPDEF-VFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEA 262 (638)
Q Consensus 188 ~~~~~A~~~~~~m~~---~g-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 262 (638)
.+.++.++++..+.. .| ..++.. .|..++-+...+|+.+.|...++.+..++|.+...--.-.-.+-..|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 345555555555542 23 445553 4455566667788888899999888888766655544444455667888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006630 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342 (638)
Q Consensus 263 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (638)
.++++.+++.+ +.|.+++.--+...-..|+--+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-.
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 88888888876 567777776666666777777888777777765 5668888888888888888888888888888765
Q ss_pred CCCCC-HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHC
Q 006630 343 GCEAD-VVTYTTLISGFCKSR---KIDRCYEILDSMIQR 377 (638)
Q Consensus 343 g~~~~-~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 377 (638)
.|. ...+..+...+.-.| +..-|.++|.+..+.
T Consensus 184 --~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 184 --QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred --CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 343 333444444433332 456677777777664
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.29 E-value=0.00044 Score=68.52 Aligned_cols=120 Identities=19% Similarity=0.065 Sum_probs=61.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCH
Q 006630 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN-ANSYTVLIQALCRMEKM 329 (638)
Q Consensus 251 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~ 329 (638)
-.+...|++++|+..++.++..- +-|+..+......+.+.++.++|.+.++.+... .|+ ....-.+.++|.+.|++
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCCh
Confidence 33444555555555555555441 223333344445555555555555555555554 223 33444455555555555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006630 330 EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374 (638)
Q Consensus 330 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 374 (638)
.+|..+++...... +-|+..|..|..+|...|+..++..-..++
T Consensus 391 ~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 391 QEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 55555555554432 334555555555555555555555544443
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.26 E-value=3.9e-05 Score=65.54 Aligned_cols=95 Identities=11% Similarity=-0.018 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc
Q 006630 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKE 256 (638)
Q Consensus 177 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 256 (638)
...+...+...|++++|.+.|+.+...+ +.+...+..+...+.+.|++++|...|+......+.+...+..+...|...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 3344444445555555555555544432 234444555555555555555555555554444444455555555555555
Q ss_pred CCHHHHHHHHHHHHHC
Q 006630 257 GKLVEAKYVLVQMKDA 272 (638)
Q Consensus 257 g~~~~A~~~~~~m~~~ 272 (638)
|++++|...|+...+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 99 GEPESALKALDLAIEI 114 (135)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 5555555555555443
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.21 E-value=6.2e-05 Score=65.05 Aligned_cols=129 Identities=12% Similarity=-0.029 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHH
Q 006630 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV--YAWTIWI 532 (638)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~li 532 (638)
.|..++..+ ..++...+...++.+.......+........+...+...|++++|...|+.+......|+. ...-.+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 3667777777777777765211111223334456677778888888888877776422221 2344466
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 006630 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586 (638)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~ 586 (638)
..+...|++++|+..++..... ...+..+....+.+...|++++|+..|+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7777788888888877653322 233445666777777888888888877765
No 139
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.19 E-value=0.015 Score=62.07 Aligned_cols=446 Identities=14% Similarity=0.093 Sum_probs=229.6
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHH
Q 006630 148 LSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227 (638)
Q Consensus 148 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 227 (638)
+.|.|+.++|..+++......+. |..|+..+-..|.+.++.++|..++++.... .|+..-...+..+|.+.+.+.+
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~--D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGT--DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCC--chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888777665544 7778888888888888888888888887765 5667777777888888777765
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHhH
Q 006630 228 AAKLFDEMRERFKPSLRHFTSLLYGWCKEGK----------LVEAKYVLVQMKDAG-FEPDIVVYNNLLSGYAQMGKMTD 296 (638)
Q Consensus 228 A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~ 296 (638)
-.+.--++-+.+|.+...+=++++.+.+.-. ..-|.+.++.+.+.+ ..-+..-...-.......|.+++
T Consensus 129 qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~e 208 (932)
T KOG2053|consen 129 QQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQE 208 (932)
T ss_pred HHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHH
Confidence 4444333433444455555555555544321 223555666666543 11122222222334456678888
Q ss_pred HHHHHH-HHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----------------
Q 006630 297 AFELLK-EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC---------------- 359 (638)
Q Consensus 297 a~~~~~-~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~---------------- 359 (638)
|.+++. ..-+.-..-+...-+--++.+...+++.+..++-.++...| +|. |.+.+..++
T Consensus 209 al~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~--~Dd--y~~~~~sv~klLe~~~~~~a~~~~s 284 (932)
T KOG2053|consen 209 ALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG--NDD--YKIYTDSVFKLLELLNKEPAEAAHS 284 (932)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC--Ccc--hHHHHHHHHHHHHhcccccchhhhh
Confidence 888873 33333233344555667778888888888888888888775 232 333222211
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006630 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH---EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436 (638)
Q Consensus 360 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 436 (638)
..+..+...+..++......+ ..|.+-+.+. -.-|+.++....|-+ +.|-.| .|..=+..|..+=..++
T Consensus 285 ~~~~l~~~~ek~~~~i~~~~R---gp~LA~lel~kr~~~~gd~ee~~~~y~~--kfg~kp---cc~~Dl~~yl~~l~~~q 356 (932)
T KOG2053|consen 285 LSKSLDECIEKAQKNIGSKSR---GPYLARLELDKRYKLIGDSEEMLSYYFK--KFGDKP---CCAIDLNHYLGHLNIDQ 356 (932)
T ss_pred hhhhHHHHHHHHHHhhccccc---CcHHHHHHHHHHhcccCChHHHHHHHHH--HhCCCc---HhHhhHHHhhccCCHHH
Confidence 122233333333333322111 1222222222 234666665544322 222121 11111222222223333
Q ss_pred HHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCC-----HHHHHHHHHHHH---hCCCC----CCCcHH------
Q 006630 437 AVNVWNEMEAASLSPGTD-------SFVVMVHGFLGQGC-----LIEACEYFKEMV---GRGLL----SAPQYG------ 491 (638)
Q Consensus 437 A~~~~~~m~~~~~~p~~~-------~~~~li~~~~~~g~-----~~~A~~~~~~m~---~~~~~----~~p~~~------ 491 (638)
-..+++...... ++.. -+.+.+..-...|. .+.-..++.+.. +.|.. .-|+..
T Consensus 357 ~~~l~~~l~~~~--~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~ 434 (932)
T KOG2053|consen 357 LKSLMSKLVLAD--DDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDEL 434 (932)
T ss_pred HHHHHHHhhccC--CcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHH
Confidence 333333332211 1111 01111111111221 122222222211 12210 012221
Q ss_pred ---HHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006630 492 ---TLKALLNSLLRAQKVE---MAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAK 565 (638)
Q Consensus 492 ---~~~~ll~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 565 (638)
+.+.++..|.+.++.. +|+-+++...... +-|..+--.+|..|+-.|-+..|.++|..+--..+.-|..-|..
T Consensus 435 llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~ 513 (932)
T KOG2053|consen 435 LLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI 513 (932)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH
Confidence 3345667777777754 4555555555441 12333445677888888999999988887744445555444432
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhc----ccccchhhhhhhhhhHHHHH
Q 006630 566 LMRGLKKLYNRQIAAEITEKVRKMAAER----QITFKMYKRRGERDLKEKAK 613 (638)
Q Consensus 566 ll~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~y~~~g~~~~A~~~~ 613 (638)
...+...|.+..+...+...+++.-++ +..+.+-.+.|.+.+..+..
T Consensus 514 -~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~ 564 (932)
T KOG2053|consen 514 -FRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEML 564 (932)
T ss_pred -HHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHH
Confidence 234445677888877777777665432 23334445556666555543
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.06 E-value=0.00021 Score=61.81 Aligned_cols=125 Identities=14% Similarity=0.107 Sum_probs=83.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc--HHHHHH
Q 006630 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPG---TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ--YGTLKA 495 (638)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~--~~~~~~ 495 (638)
|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+....... .|. ......
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~--d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAP--DPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CHHHHHHHHHH
Confidence 44444444 4677788888888877754 222 13334455677788888888888888887652 232 224445
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006630 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551 (638)
Q Consensus 496 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 551 (638)
+...+...|++++|...++..... ......+....++|.+.|++++|...|++.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 667777888888888888664332 234556677788888888888888888764
No 141
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.00016 Score=69.66 Aligned_cols=89 Identities=9% Similarity=-0.038 Sum_probs=53.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006630 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396 (638)
Q Consensus 317 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 396 (638)
......+.+..++.+|+..+...++.+ +.+..-|..-...+...|++++|.--.+.-.+.... ........-.++...
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLAL 130 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhh
Confidence 344566777788888888888887764 224455555666677778888777655544432111 122444444555555
Q ss_pred CCHHHHHHHHH
Q 006630 397 EELEECVELMG 407 (638)
Q Consensus 397 g~~~~a~~~~~ 407 (638)
++..+|.+.++
T Consensus 131 ~~~i~A~~~~~ 141 (486)
T KOG0550|consen 131 SDLIEAEEKLK 141 (486)
T ss_pred HHHHHHHHHhh
Confidence 55666665555
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.03 E-value=0.00019 Score=71.84 Aligned_cols=127 Identities=20% Similarity=0.229 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 006630 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDA 218 (638)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 218 (638)
..-.+|+..+...++++.|+.+|+++...+|. ....+++.+...++-.+|++++.+.++.. +.|......-...
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pe-----v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPE-----VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCc-----HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34455666677778888888888888876532 34457777777788888888888877553 4566677777777
Q ss_pred HHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 219 LCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271 (638)
Q Consensus 219 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 271 (638)
|.+.++.+.|+.+.+++.+..|.+..+|..|..+|.+.|++++|+-.++.+..
T Consensus 244 Ll~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 88888888888888888877777778888888888888888888888877653
No 143
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.0012 Score=63.86 Aligned_cols=277 Identities=13% Similarity=0.082 Sum_probs=168.6
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 006630 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD-VVTYTTLISGFCK 360 (638)
Q Consensus 282 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~ 360 (638)
......+.+..++..|+..+...++..+. +..-|..-...+...|++++|.--.+.-.+. ++. .....-.-.++..
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLA 129 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhh
Confidence 34557788888999999999999987544 4566666666777778888887666555443 222 2233334444555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHH-HHHHHHcCCHHHHH
Q 006630 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC-VPDVSNYNVV-IRLACKLGELKEAV 438 (638)
Q Consensus 361 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l-i~~~~~~g~~~~A~ 438 (638)
.++..+|.+.++ +...+ ....++..++.+..... +|....+..+ ..++.-.|+.++|.
T Consensus 130 ~~~~i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~ 189 (486)
T KOG0550|consen 130 LSDLIEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQ 189 (486)
T ss_pred hHHHHHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHH
Confidence 555555555554 11111 11122222333332221 2333444333 23566678888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHH-------------HHHHHHc
Q 006630 439 NVWNEMEAASLSPGTDSFVVMVHG--FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL-------------LNSLLRA 503 (638)
Q Consensus 439 ~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~l-------------l~~~~~~ 503 (638)
.+--.+.+.+ ..+ .+...+.+ +--.++.+.|...|.+.+..+ |+......+ .+-..+.
T Consensus 190 ~ea~~ilkld-~~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ld----pdh~~sk~~~~~~k~le~~k~~gN~~fk~ 262 (486)
T KOG0550|consen 190 SEAIDILKLD-ATN--AEALYVRGLCLYYNDNADKAINHFQQALRLD----PDHQKSKSASMMPKKLEVKKERGNDAFKN 262 (486)
T ss_pred HHHHHHHhcc-cch--hHHHHhcccccccccchHHHHHHHhhhhccC----hhhhhHHhHhhhHHHHHHHHhhhhhHhhc
Confidence 8888777654 333 33333433 445788899999999888876 543322221 1224577
Q ss_pred CCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhhcCHH
Q 006630 504 QKVEMAKDVWSCIVTK---GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT---FAKLMRGLKKLYNRQ 577 (638)
Q Consensus 504 g~~~~A~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t---~~~ll~~~~~~g~~~ 577 (638)
|++..|.+.|.+.+.. ...|+...|.....+..+.|+.++|+.-.+..+. .|+.. |..-..++...++++
T Consensus 263 G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 263 GNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDSSYIKALLRRANCHLALEKWE 338 (486)
T ss_pred cchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888765 2344555666666777888888888888877663 33332 222333455668888
Q ss_pred HHHHHHHHHHHHHHh
Q 006630 578 IAAEITEKVRKMAAE 592 (638)
Q Consensus 578 ~A~~~~~~~~~~~p~ 592 (638)
+|.+.++++.+...+
T Consensus 339 ~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 339 EAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHhhccc
Confidence 888888888887654
No 144
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.01 E-value=0.00012 Score=60.92 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHH
Q 006630 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCE--LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ----PDTFAK 565 (638)
Q Consensus 492 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~t~~~ 565 (638)
++..+...+...|++++|.+.|..+...... .....+..+..++.+.|++++|...|+.+... .|+ ...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCcccHHHHH
Confidence 3445555666677777777777777654211 11334555677777777777777777777653 222 345666
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 566 LMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 566 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
+..++.+.|+.+.|...++++++..|+++..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 6667777777777777777777777776554
No 145
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.97 E-value=1.3e-05 Score=49.85 Aligned_cols=33 Identities=36% Similarity=0.741 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006630 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD 277 (638)
Q Consensus 245 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 277 (638)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777766665
No 146
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.96 E-value=4.1e-05 Score=64.83 Aligned_cols=84 Identities=12% Similarity=-0.034 Sum_probs=41.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhh
Q 006630 531 WIHSLFSNGHVKEACSYCLDMMDADVMP-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGE 605 (638)
Q Consensus 531 li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~ 605 (638)
+..-+...|++++|.++|+-+... .| +..-|..|...|...|++++|+..+.++..++|++|..+ ..|...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC
Confidence 334444555555555555544432 23 233344455555555555555555555555555555543 34555555
Q ss_pred hhhHHHHHhhh
Q 006630 606 RDLKEKAKKQV 616 (638)
Q Consensus 606 ~~~A~~~~~~~ 616 (638)
.++|++.|+..
T Consensus 119 ~~~A~~aF~~A 129 (157)
T PRK15363 119 VCYAIKALKAV 129 (157)
T ss_pred HHHHHHHHHHH
Confidence 55555555543
No 147
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.95 E-value=0.00032 Score=70.25 Aligned_cols=119 Identities=17% Similarity=0.173 Sum_probs=59.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCH
Q 006630 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKL 259 (638)
Q Consensus 180 li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 259 (638)
++..+...++++.|+++|+++.+. .|++ ...|+..+...++-.+|.+++++.....|.+...+......+.+.+++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~--~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRER--DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhc--CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 444444455555555555555543 2332 223444444455555555555555444444555555555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHH
Q 006630 260 VEAKYVLVQMKDAGFEPDI-VVYNNLLSGYAQMGKMTDAFELLKEM 304 (638)
Q Consensus 260 ~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~ 304 (638)
+.|+.+.+++.+. .|+. .+|..|..+|...|+++.|+-.++.+
T Consensus 251 ~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 251 ELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 5555555555544 2322 35555555555555555555554443
No 148
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.92 E-value=4.9e-05 Score=70.51 Aligned_cols=92 Identities=14% Similarity=0.181 Sum_probs=55.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhcCHHH
Q 006630 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLYNRQI 578 (638)
Q Consensus 500 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~ 578 (638)
+.+.+++++|+..|.++++... -|.+.|..=..+|.+.|.++.|++-++..+.. .|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHH
Confidence 3455666666666666666522 24555555556666666666666666665533 343 3456666666666666666
Q ss_pred HHHHHHHHHHHHHhcc
Q 006630 579 AAEITEKVRKMAAERQ 594 (638)
Q Consensus 579 A~~~~~~~~~~~p~~~ 594 (638)
|++.|+++++++|+++
T Consensus 168 A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHhhhccCCCcH
Confidence 6666666666666665
No 149
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.91 E-value=2.1e-05 Score=48.86 Aligned_cols=33 Identities=42% Similarity=0.957 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006630 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382 (638)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 382 (638)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566777777777777777777777777666665
No 150
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.91 E-value=0.042 Score=57.02 Aligned_cols=362 Identities=15% Similarity=0.127 Sum_probs=182.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhchhC-CCCCCH--------HHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCC
Q 006630 172 ITTEVFVILMRRFASARMVKKAIEVLDEMPKY-GCEPDE--------FVFGCLLDALCKNSSVKEAAKLFDEMRERFKPS 242 (638)
Q Consensus 172 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 242 (638)
|.+..|..+.......-.++-|...|-+.... |++.-. ..-.+=+.+ --|++++|++++-++..+
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drr---- 763 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRR---- 763 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchh----
Confidence 56777887777766666777777777655432 221100 001111122 247788888887766544
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 006630 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDA-GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321 (638)
Q Consensus 243 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 321 (638)
...|..+.+.|++-...++++.--.. .-..-...|+.+...++....+++|.+.+..-.. . ...+.
T Consensus 764 ----DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~~~e 830 (1189)
T KOG2041|consen 764 ----DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T---ENQIE 830 (1189)
T ss_pred ----hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h---HhHHH
Confidence 23456666777776666655431100 0011134677777777777777777777654321 1 23455
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006630 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401 (638)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 401 (638)
++.+..++++-+.+-..+. -|....-.|...+...|.-++|.+.|-+. +. | ...+..|...+++.+
T Consensus 831 cly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~LnQW~~ 896 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELNQWGE 896 (1189)
T ss_pred HHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHHHHHH
Confidence 5555555555554444443 34555566677777778777777655332 11 1 124556777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHH--------------HHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHH
Q 006630 402 CVELMGEMRKIGCVPDVSNY--------------NVVIRLACKLGELKEAVNVWNEMEAA----SLSPGTDSFVVMVHGF 463 (638)
Q Consensus 402 a~~~~~~~~~~~~~~~~~~~--------------~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~li~~~ 463 (638)
|.++-+... -|...+. ---|..+.+.|+.-+|.+++.+|.++ +.++-..--..++.++
T Consensus 897 avelaq~~~----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~Al 972 (1189)
T KOG2041|consen 897 AVELAQRFQ----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGAL 972 (1189)
T ss_pred HHHHHHhcc----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHH
Confidence 777655432 1111111 11245566677766677777666532 3222211111112221
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 006630 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543 (638)
Q Consensus 464 ~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 543 (638)
. ..+..++++-.+.....|. ....| . +...|-..++-++.+..-. .....+|-.|..-....|..+.
T Consensus 973 L-vE~h~~~ik~~~~~~~~g~---~~dat--~----lles~~l~~~~ri~~n~Wr---gAEAyHFmilAQrql~eg~v~~ 1039 (1189)
T KOG2041|consen 973 L-VENHRQTIKELRKIDKHGF---LEDAT--D----LLESGLLAEQSRILENTWR---GAEAYHFMILAQRQLFEGRVKD 1039 (1189)
T ss_pred H-HHHHHHHHHHhhhhhhcCc---chhhh--h----hhhhhhhhhHHHHHHhhhh---hHHHHHHHHHHHHHHHhchHHH
Confidence 1 1122333333333333332 11111 0 1233334444444443322 1134455555566677899999
Q ss_pred HHHHHHHHHh-CCCCCCHHHHHHHHHHHHhhcCHHHHHHHH
Q 006630 544 ACSYCLDMMD-ADVMPQPDTFAKLMRGLKKLYNRQIAAEIT 583 (638)
Q Consensus 544 A~~~~~~m~~-~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~ 583 (638)
|++.--.+.+ ..+-|-..+|..+.-+.+....+..--+.+
T Consensus 1040 Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAf 1080 (1189)
T KOG2041|consen 1040 ALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAF 1080 (1189)
T ss_pred HHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHH
Confidence 9876544444 345566666766655444433343333333
No 151
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.88 E-value=0.00018 Score=72.31 Aligned_cols=97 Identities=14% Similarity=0.095 Sum_probs=60.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhcCH
Q 006630 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP-QPDTFAKLMRGLKKLYNR 576 (638)
Q Consensus 498 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~ 576 (638)
..+...|++++|++.|+++++... -+...|..+..+|...|++++|+..++++++. .| +...|..+..+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCH
Confidence 344556666666666666666532 24555666666666667777777766666654 33 344566666666666777
Q ss_pred HHHHHHHHHHHHHHHhccccc
Q 006630 577 QIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 577 ~~A~~~~~~~~~~~p~~~~~~ 597 (638)
+.|+..++++++++|+++.+.
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~ 107 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFT 107 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHH
Confidence 777777777777776666553
No 152
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.87 E-value=0.00031 Score=68.03 Aligned_cols=137 Identities=10% Similarity=0.104 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006630 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR-AQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532 (638)
Q Consensus 454 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 532 (638)
.+|..++....+.+..+.|..+|.+..+.+ ..+...|......-.+ .++.+.|..+|+..++. +..+...|...+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~---~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~ 77 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK---RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHH
Confidence 367777777777777888888888887554 2445566555555334 56666688888888876 455778888888
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 533 HSLFSNGHVKEACSYCLDMMDADVMPQP----DTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
+.+...|+.+.|..+|++.+.. .|.. ..|...+..-.+.|+.+....+.+++.+.-|++...
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 8888888888888888888754 3333 478888888888899999999988888888775543
No 153
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.86 E-value=0.00062 Score=71.44 Aligned_cols=142 Identities=10% Similarity=0.048 Sum_probs=89.7
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCCc-HHHHHHHHHHHHHc--------CCHHHHHHHHHH
Q 006630 450 SPGTDSFVVMVHGFLGQ-----GCLIEACEYFKEMVGRGLLSAPQ-YGTLKALLNSLLRA--------QKVEMAKDVWSC 515 (638)
Q Consensus 450 ~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~p~-~~~~~~ll~~~~~~--------g~~~~A~~~~~~ 515 (638)
+.|...|...+.+.... +...+|+.+|++.++.. |+ ...+..+..++... .++..+.+...+
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld----P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE----PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 44445555555543321 12455666666666654 33 22333332222211 123344444444
Q ss_pred HHHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcc
Q 006630 516 IVTK-GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQ 594 (638)
Q Consensus 516 ~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 594 (638)
.... ....+...|.++.-.....|++++|...++++++. .|+...|..+...+...|+.++|.+.+++++.++|.++
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 4332 12335567777766677789999999999998876 57888888999999999999999999999999999988
Q ss_pred ccc
Q 006630 595 ITF 597 (638)
Q Consensus 595 ~~~ 597 (638)
..+
T Consensus 488 t~~ 490 (517)
T PRK10153 488 TLY 490 (517)
T ss_pred hHH
Confidence 653
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.84 E-value=0.00054 Score=56.83 Aligned_cols=108 Identities=11% Similarity=0.013 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCC--CCCHHHHHHHH
Q 006630 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQL-ITTEVFVILMRRFASARMVKKAIEVLDEMPKYGC--EPDEFVFGCLL 216 (638)
Q Consensus 140 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~--~~~~~~~~~li 216 (638)
++-.++..+.+.|++++|...|+.+....|.. .....+..+...+.+.|+++.|...|+.+..... +....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 34455666677777777777777776655432 1234455566667777777777777776665321 11234556666
Q ss_pred HHHHhCCCHHHHHHHHHHHhccCCCCHHHHH
Q 006630 217 DALCKNSSVKEAAKLFDEMRERFKPSLRHFT 247 (638)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 247 (638)
.++.+.|+.++|...++++....|.+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 6666677777777777776665555554443
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.84 E-value=0.00022 Score=55.98 Aligned_cols=94 Identities=17% Similarity=0.107 Sum_probs=48.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcC
Q 006630 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN 575 (638)
Q Consensus 496 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 575 (638)
+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|.+.++...+.. ..+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 3444445555555555555554431 1122444455555555566666666655555432 1222345555555555566
Q ss_pred HHHHHHHHHHHHHHHH
Q 006630 576 RQIAAEITEKVRKMAA 591 (638)
Q Consensus 576 ~~~A~~~~~~~~~~~p 591 (638)
++.|...++++++..|
T Consensus 84 ~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 84 YEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHccCC
Confidence 6666666665555444
No 156
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.80 E-value=3.4e-05 Score=47.54 Aligned_cols=32 Identities=28% Similarity=0.463 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006630 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEP 276 (638)
Q Consensus 245 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 276 (638)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 157
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.78 E-value=3.9e-05 Score=47.25 Aligned_cols=32 Identities=28% Similarity=0.584 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006630 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381 (638)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 381 (638)
+|+++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
No 158
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.73 E-value=0.00011 Score=54.13 Aligned_cols=66 Identities=26% Similarity=0.294 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHH
Q 006630 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLY-NRQIAAEITEKVRKMAA 591 (638)
Q Consensus 524 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g-~~~~A~~~~~~~~~~~p 591 (638)
+...|..+...+...|++++|+..|++.++. .|+ ...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567888888888889999999888888875 454 556888888888888 78899999998888877
No 159
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.73 E-value=0.00066 Score=53.19 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=8.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 006630 246 FTSLLYGWCKEGKLVEAKYVLVQ 268 (638)
Q Consensus 246 ~~~li~~~~~~g~~~~A~~~~~~ 268 (638)
+..+...+...|++++|.+.|+.
T Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~ 59 (100)
T cd00189 37 YYNLAAAYYKLGKYEEALEDYEK 59 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 160
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.72 E-value=0.00011 Score=53.39 Aligned_cols=62 Identities=18% Similarity=0.219 Sum_probs=48.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcc
Q 006630 531 WIHSLFSNGHVKEACSYCLDMMDADVMP-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQ 594 (638)
Q Consensus 531 li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 594 (638)
+...+...|++++|+..|+++++. .| +...+..+..++...|++++|...++++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778888999999999888865 45 455678888888888999999999999999888875
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.71 E-value=5.2e-05 Score=58.45 Aligned_cols=80 Identities=21% Similarity=0.147 Sum_probs=40.0
Q ss_pred cCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhhcCHHHHH
Q 006630 503 AQKVEMAKDVWSCIVTKGC-ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP-DTFAKLMRGLKKLYNRQIAA 580 (638)
Q Consensus 503 ~g~~~~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g~~~~A~ 580 (638)
.|+++.|+.+++++.+... .++...|-.+..+|.+.|++++|+.++++ .+ ..|+. .....+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 3556666666666655522 11333444456666666666666666655 21 12222 23333355556666666666
Q ss_pred HHHHH
Q 006630 581 EITEK 585 (638)
Q Consensus 581 ~~~~~ 585 (638)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66554
No 162
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.69 E-value=0.00074 Score=67.96 Aligned_cols=121 Identities=11% Similarity=0.111 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006630 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK--GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352 (638)
Q Consensus 275 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 352 (638)
+.+......+++.+....+++.+..++-+.... ....-..|..++|+.|.+.|..+.++.++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334444444455554444555555555444433 111112233455555555555555555555555555555555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006630 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395 (638)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 395 (638)
.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 5555555555555555555555555444444555444444433
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.69 E-value=0.0022 Score=57.21 Aligned_cols=85 Identities=13% Similarity=0.111 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 006630 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPD--EFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGW 253 (638)
Q Consensus 176 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 253 (638)
.+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+++.....+.+...+..+...|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344444444455555555555555443321111 234555555555566666666666555544444555555555555
Q ss_pred HhcCCHH
Q 006630 254 CKEGKLV 260 (638)
Q Consensus 254 ~~~g~~~ 260 (638)
...|+..
T Consensus 117 ~~~g~~~ 123 (172)
T PRK02603 117 HKRGEKA 123 (172)
T ss_pred HHcCChH
Confidence 5555543
No 164
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.65 E-value=0.0042 Score=53.48 Aligned_cols=129 Identities=15% Similarity=0.074 Sum_probs=70.8
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHHHHHHH
Q 006630 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD-VMPQPDTFAKL 566 (638)
Q Consensus 488 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~l 566 (638)
|+...-..|.+++...|++.+|...|.+...--+.-|....-.+..+....+++.+|...++++.+.+ -.-++.+...+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 44444445556666666666666666666544334455555555566666666666666666655431 00122334445
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhcccc--c-chhhhhhhhhhHHHHHhhh
Q 006630 567 MRGLKKLYNRQIAAEITEKVRKMAAERQIT--F-KMYKRRGERDLKEKAKKQV 616 (638)
Q Consensus 567 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~--~-~~y~~~g~~~~A~~~~~~~ 616 (638)
..++...|.+..|+..++.++...|..... | .++.++|+.++|..-+..+
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 556666666666666666666665543332 2 4666666666665544443
No 165
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.64 E-value=0.0011 Score=64.29 Aligned_cols=127 Identities=14% Similarity=0.156 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Q 006630 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCK-NSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCK 255 (638)
Q Consensus 177 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~ 255 (638)
|..+++..-+.+..+.|..+|.+..+.+ ..+..+|.....+-.. .++.+.|.++|+...+.++.+...|...+..+..
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 4444444444444555555555544322 1122222222222112 2334445555555554455555555555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 006630 256 EGKLVEAKYVLVQMKDAGFEPDI----VVYNNLLSGYAQMGKMTDAFELLKEMRR 306 (638)
Q Consensus 256 ~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 306 (638)
.|+.+.|..+|++.... .|.. ..|...+..=.+.|+++.+.++.+.+.+
T Consensus 83 ~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 83 LNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp TT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555433 1222 2444444444444555554444444443
No 166
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.64 E-value=0.0014 Score=58.58 Aligned_cols=118 Identities=12% Similarity=-0.062 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006630 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP-QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532 (638)
Q Consensus 454 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 532 (638)
..+..+...+...|++++|+..|++.+..... .+ ....+..+...+.+.|++++|...++++++.. +-+...+..+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEED-PNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 34555555666666666666666666654321 11 12345555555666666666666666665542 11344455555
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcc
Q 006630 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQ 594 (638)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 594 (638)
.++...|+...+..-++... ..+++|.++++++++.+|++.
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~---------------------~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAE---------------------ALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHcCChHhHhhCHHHHH---------------------HHHHHHHHHHHHHHhhCchhH
Confidence 55555555554443332221 126778888888888888763
No 167
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.64 E-value=0.0088 Score=50.92 Aligned_cols=86 Identities=9% Similarity=-0.126 Sum_probs=36.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 006630 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHV 541 (638)
Q Consensus 462 ~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 541 (638)
.+...|++++|..+|+.+...+ +-+..-|-.|.-+|...|++++|+..|..+....+ -|+..+-.+..++...|+.
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~D---p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYD---AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCH
Confidence 3344444444444444444433 12333333444444444444444444444444322 1333344444444444444
Q ss_pred HHHHHHHHHH
Q 006630 542 KEACSYCLDM 551 (638)
Q Consensus 542 ~~A~~~~~~m 551 (638)
+.|.+.|+..
T Consensus 120 ~~A~~aF~~A 129 (157)
T PRK15363 120 CYAIKALKAV 129 (157)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 168
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.64 E-value=0.00079 Score=67.72 Aligned_cols=124 Identities=15% Similarity=0.168 Sum_probs=103.7
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006630 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS--GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLT 385 (638)
Q Consensus 308 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 385 (638)
+.+.+......+++......+++++..++.+.... ....-..|..++|+.|.+.|..++++.++..=...|+.||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556777788888888888899999999988765 2222344567999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006630 386 YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431 (638)
Q Consensus 386 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 431 (638)
++.+++.+.+.|++..|.++...|...+...+..++...+..|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999998887777777777666666665
No 169
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.59 E-value=8e-05 Score=44.66 Aligned_cols=29 Identities=38% Similarity=0.748 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006630 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAG 273 (638)
Q Consensus 245 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 273 (638)
+||.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45566666666666666666666665554
No 170
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.59 E-value=0.0013 Score=58.52 Aligned_cols=81 Identities=10% Similarity=-0.022 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 006630 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEP--DEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLY 251 (638)
Q Consensus 174 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 251 (638)
...+..+...+...|++++|+..|+........+ ...++..+..+|...|++++|+..++......+....++..+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 3445555556666677777777777665442111 12456666677777777777777777666554555555666655
Q ss_pred HHH
Q 006630 252 GWC 254 (638)
Q Consensus 252 ~~~ 254 (638)
.+.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 555
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.58 E-value=0.023 Score=55.33 Aligned_cols=151 Identities=13% Similarity=0.108 Sum_probs=67.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCC-CC--cHHHHHHHHHHHH
Q 006630 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ-GCLIEACEYFKEMVGRGLLS-AP--QYGTLKALLNSLL 501 (638)
Q Consensus 426 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~-~p--~~~~~~~ll~~~~ 501 (638)
..|...|++..|-+++..+ ...|... |++++|+++|++..+.-... .+ -..++..+...+.
T Consensus 102 ~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence 3455555555554444433 2334444 56666666666554421000 11 1224445555666
Q ss_pred HcCCHHHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHHH
Q 006630 502 RAQKVEMAKDVWSCIVTKGCE-----LNVY-AWTIWIHSLFSNGHVKEACSYCLDMMDA--DVMPQ--PDTFAKLMRGLK 571 (638)
Q Consensus 502 ~~g~~~~A~~~~~~~~~~~~~-----p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~--~~t~~~ll~~~~ 571 (638)
+.|++++|.++|+++...-.. .+.. .+-..+-++...|++..|...+++.... ++..+ ......|+.+|.
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 677777777777766554111 1111 1222233455567777777777766532 11112 233445555554
Q ss_pred hh--cCHHHHHHHHHHHHHHHH
Q 006630 572 KL--YNRQIAAEITEKVRKMAA 591 (638)
Q Consensus 572 ~~--g~~~~A~~~~~~~~~~~p 591 (638)
.. ..++.+..-+..+.+++|
T Consensus 247 ~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 247 EGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp TT-CCCHHHHCHHHTTSS---H
T ss_pred hCCHHHHHHHHHHHcccCccHH
Confidence 32 344445555554444443
No 172
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.57 E-value=0.0022 Score=64.47 Aligned_cols=88 Identities=5% Similarity=-0.139 Sum_probs=45.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 006630 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHV 541 (638)
Q Consensus 462 ~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 541 (638)
.+...|++++|+++|+++++.. +.+...+..+..+|.+.|++++|+..+++++.... .+...|..+..+|...|++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~---P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD---PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCH
Confidence 3344555555555555555544 23344455555555555555555555555555421 1344455555555555555
Q ss_pred HHHHHHHHHHHh
Q 006630 542 KEACSYCLDMMD 553 (638)
Q Consensus 542 ~~A~~~~~~m~~ 553 (638)
++|+..|++.++
T Consensus 87 ~eA~~~~~~al~ 98 (356)
T PLN03088 87 QTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHHH
Confidence 555555555554
No 173
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.55 E-value=0.026 Score=53.24 Aligned_cols=177 Identities=10% Similarity=0.089 Sum_probs=88.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006630 214 CLLDALCKNSSVKEAAKLFDEMRERFKPSLRHF---TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290 (638)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 290 (638)
.....+.+.|++++|.+.|+.+....|.+...- -.++.+|.+.+++++|...+++..+....-....|...+.+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 344444556777777777777766655554443 34456667777777777777777765322222333333333321
Q ss_pred --c---------------CC---HhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 006630 291 --M---------------GK---MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVT 350 (638)
Q Consensus 291 --~---------------g~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 350 (638)
. .+ ...|.+.|+.+++. |=...-..+|...+..+... =...
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~----la~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR----LAKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH----HHHH
Confidence 0 01 12233344444333 22222233444333333211 0000
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006630 351 YTTLISGFCKSRKIDRCYEILDSMIQR--GILPNQLTYLHIMLAHEKKEELEECVELMGEM 409 (638)
Q Consensus 351 ~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 409 (638)
--.+..-|.+.|.+..|+.-++.+++. +..........++.++...|..++|......+
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 112344566777777777777777664 22223445555566666666666666555443
No 174
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.53 E-value=9.6e-05 Score=44.32 Aligned_cols=29 Identities=45% Similarity=0.932 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006630 350 TYTTLISGFCKSRKIDRCYEILDSMIQRG 378 (638)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 378 (638)
+|+++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34445555555555555555555544443
No 175
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.53 E-value=0.00019 Score=55.28 Aligned_cols=82 Identities=18% Similarity=0.177 Sum_probs=34.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 006630 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545 (638)
Q Consensus 466 ~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 545 (638)
+|++++|+.+|+++...... .++...+..+..++.+.|++++|..+++. .+.+.. +....-.+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-NPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-THHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHH
Confidence 34555555555555554310 01222333345555555555555555544 211111 1122223344555555555555
Q ss_pred HHHHH
Q 006630 546 SYCLD 550 (638)
Q Consensus 546 ~~~~~ 550 (638)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55443
No 176
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.18 Score=53.26 Aligned_cols=328 Identities=14% Similarity=0.125 Sum_probs=174.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccC---CCCHHHHHHHHHHHHh
Q 006630 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF---KPSLRHFTSLLYGWCK 255 (638)
Q Consensus 179 ~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~li~~~~~ 255 (638)
.+|..+...+.+..|+++-..+...-... ..+|.....-+.+..+..+ ..+++.+.+++ .-...+|..+..-...
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d-~~vld~I~~kls~~~~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMD-EEVLDKIDEKLSAKLTPGISYAAIARRAYQ 519 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccc-hHHHHHHHHHhcccCCCceeHHHHHHHHHh
Confidence 46777788889999999887765321111 4666666666666532211 23334443321 1355678888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHH
Q 006630 256 EGKLVEAKYVLVQMKDAGFE----PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331 (638)
Q Consensus 256 ~g~~~~A~~~~~~m~~~g~~----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 331 (638)
.|+++-|..+++.=...+.. .+..-+...+.-+.+.|+.+....++-.+... .+...+... ..+...
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~------l~~~p~ 590 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMT------LRNQPL 590 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHH------HHhchh
Confidence 99999888877642221100 01112333444555556666655555555433 111111111 133445
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--HHH----HCCCCCCHHHHHHHHHHHHhcCCHH---HH
Q 006630 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD--SMI----QRGILPNQLTYLHIMLAHEKKEELE---EC 402 (638)
Q Consensus 332 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~--~m~----~~~~~p~~~t~~~ll~~~~~~g~~~---~a 402 (638)
|..+|.+..+.. |..+ +-+.|. .++-.+++..|. ... ..+..|+.. ....++++..... ++
T Consensus 591 a~~lY~~~~r~~---~~~~---l~d~y~-q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk---~~a~~~a~sk~~s~e~ka 660 (829)
T KOG2280|consen 591 ALSLYRQFMRHQ---DRAT---LYDFYN-QDDNHQALASFHLQASYAAETIEGRIPALK---TAANAFAKSKEKSFEAKA 660 (829)
T ss_pred hhHHHHHHHHhh---chhh---hhhhhh-cccchhhhhhhhhhhhhhhhhhcccchhHH---HHHHHHhhhhhhhhHHHH
Confidence 666666655421 2111 112222 222222222221 110 123333332 2334444433311 11
Q ss_pred -------HHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006630 403 -------VELMGEMRK-IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474 (638)
Q Consensus 403 -------~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 474 (638)
+.+.+.+.. .|......+.+--+.-+...|+..+|.++-.+.. .||-..|-.-+.+++..+++++-.+
T Consensus 661 ~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLek 736 (829)
T KOG2280|consen 661 LEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEK 736 (829)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHH
Confidence 112222211 1222233334444555677788888888877775 5777788888888888888877666
Q ss_pred HHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006630 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548 (638)
Q Consensus 475 ~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 548 (638)
+-+.+.. +.-|.-...+|.+.|+.++|.+++.+.... . -.+.+|.+.|++.+|.++-
T Consensus 737 fAkskks--------PIGy~PFVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 737 FAKSKKS--------PIGYLPFVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHhccCC--------CCCchhHHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHH
Confidence 5544421 223445677888889988888886654321 1 4567788888888887763
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.45 E-value=0.0093 Score=62.76 Aligned_cols=143 Identities=12% Similarity=0.031 Sum_probs=83.8
Q ss_pred CCCHHHHHHHHHHHHH--cC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHh
Q 006630 415 VPDVSNYNVVIRLACK--LG---ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ--------GCLIEACEYFKEMVG 481 (638)
Q Consensus 415 ~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~ 481 (638)
+.+...|...+++... .+ ....|..+|++..+.+ +-....|..+..++... ++...+.+...+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4455555555554322 21 2456666666666654 22233444333332221 122334444444333
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 006630 482 RGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPD 561 (638)
Q Consensus 482 ~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 561 (638)
.... +.+...+..+.-.....|++++|...+++++.. .|+...|..+...+...|+.++|.+.+++.... .|...
T Consensus 413 l~~~-~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~p 487 (517)
T PRK10153 413 LPEL-NVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGEN 487 (517)
T ss_pred cccC-cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCc
Confidence 2111 234456666655566678899999999888886 467788888888888899999999988888754 45544
Q ss_pred HH
Q 006630 562 TF 563 (638)
Q Consensus 562 t~ 563 (638)
||
T Consensus 488 t~ 489 (517)
T PRK10153 488 TL 489 (517)
T ss_pred hH
Confidence 43
No 178
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0071 Score=56.85 Aligned_cols=121 Identities=13% Similarity=0.187 Sum_probs=85.9
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Q 006630 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQ---KVEMAKDVWSCIV 517 (638)
Q Consensus 441 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~ 517 (638)
++.-...+ +-|...|-.|...|...|++..|..-|.+..+.. +++...+..+..++.... ...++..+|++++
T Consensus 145 Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~---g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 145 LETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA---GDNPEILLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred HHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 33333444 6677888888888888888888888888888865 366667777777665432 3467888888888
Q ss_pred HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006630 518 TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568 (638)
Q Consensus 518 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 568 (638)
+.+.. |+.+...+...+...|++.+|...|+.|++. -|....+..++.
T Consensus 221 ~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 221 ALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred hcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 76322 5666667777888888888888888888865 444445555554
No 179
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.44 E-value=0.0029 Score=49.87 Aligned_cols=74 Identities=12% Similarity=0.263 Sum_probs=34.4
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCC-CCCHHhHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006630 284 LLSGYAQMGKMTDAFELLKEMRRKGC-DPNANSYTVLIQALCRME--------KMEEANRAFVEMERSGCEADVVTYTTL 354 (638)
Q Consensus 284 ll~~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~~~~~~~~~l 354 (638)
.|..|...+++.....+|+.+++.|+ .|+..+|+.++...++.. ++-+.+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 33444444555555555555555555 455555555555444321 122333444444444444444444444
Q ss_pred HHH
Q 006630 355 ISG 357 (638)
Q Consensus 355 i~~ 357 (638)
+..
T Consensus 111 l~~ 113 (120)
T PF08579_consen 111 LGS 113 (120)
T ss_pred HHH
Confidence 443
No 180
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.43 E-value=0.0025 Score=50.16 Aligned_cols=80 Identities=16% Similarity=0.336 Sum_probs=65.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------CHhHHHHHHHHHHHcCCCCCHHhH
Q 006630 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGF-EPDIVVYNNLLSGYAQMG--------KMTDAFELLKEMRRKGCDPNANSY 316 (638)
Q Consensus 246 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~~~g~~~~~~~~ 316 (638)
-...|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+++.|+..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34455566666899999999999999998 899999999998887753 244567888999999999999999
Q ss_pred HHHHHHHHh
Q 006630 317 TVLIQALCR 325 (638)
Q Consensus 317 ~~li~~~~~ 325 (638)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999987765
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.43 E-value=0.0029 Score=56.27 Aligned_cols=65 Identities=9% Similarity=-0.051 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006630 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519 (638)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 519 (638)
.|..+...+...|++++|+..|++.+.....+.....++..+...+...|++++|...++++...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44555555555566666666666655442110011234555555555566666666666555543
No 182
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.41 E-value=0.0072 Score=49.53 Aligned_cols=93 Identities=17% Similarity=0.177 Sum_probs=65.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHH
Q 006630 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN----VYAWTIWIH 533 (638)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~ 533 (638)
.+..++-..|+.++|+.+|++....|.........+..+..++...|++++|..+|++.... .|+ ......+.-
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHH
Confidence 35566777888888888888888887632222446777788888888888888888888765 232 222233345
Q ss_pred HHHccCCHHHHHHHHHHHH
Q 006630 534 SLFSNGHVKEACSYCLDMM 552 (638)
Q Consensus 534 ~~~~~g~~~~A~~~~~~m~ 552 (638)
++...|+.++|++.+-..+
T Consensus 84 ~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 6778888888888876654
No 183
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.40 E-value=0.0067 Score=49.71 Aligned_cols=106 Identities=20% Similarity=0.118 Sum_probs=67.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhchhCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCC---CHHHHHHHHHHHH
Q 006630 180 LMRRFASARMVKKAIEVLDEMPKYGCEPD--EFVFGCLLDALCKNSSVKEAAKLFDEMRERFKP---SLRHFTSLLYGWC 254 (638)
Q Consensus 180 li~~~~~~~~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~li~~~~ 254 (638)
+..++-..|+.++|+.+|++....|+... ...+-.+...|...|++++|..+|++....+|. +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34455567888888888888777775544 245556677777788888888888877665444 3334444455667
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006630 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA 289 (638)
Q Consensus 255 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 289 (638)
..|+.++|++.+-.... ++...|.--|..|+
T Consensus 87 ~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 77888888877766553 23335555555443
No 184
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.39 E-value=0.00031 Score=51.72 Aligned_cols=61 Identities=11% Similarity=0.069 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhh-hhhhHHHHHhhhhhh
Q 006630 559 QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRG-ERDLKEKAKKQVDGR 619 (638)
Q Consensus 559 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g-~~~~A~~~~~~~~~~ 619 (638)
++.+|..+...+...|++++|+..++++++++|+++.++ .+|...| ++++|.+.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 467889999999999999999999999999999999886 5889999 899999999986654
No 185
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.37 E-value=0.037 Score=53.86 Aligned_cols=91 Identities=16% Similarity=0.304 Sum_probs=39.5
Q ss_pred HHHhc-CCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----CH-HHHHHH
Q 006630 392 AHEKK-EELEECVELMGEMRKI----GCV-PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP-----GT-DSFVVM 459 (638)
Q Consensus 392 ~~~~~-g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~-~~~~~l 459 (638)
.|... |++++|.+.|++..+. +.+ .-..++..+...+.+.|++++|.++|+++....... +. ..|...
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 34444 5666666666555432 100 001233444555666666666666666655432111 11 112222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 006630 460 VHGFLGQGCLIEACEYFKEMVGR 482 (638)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~m~~~ 482 (638)
+-.+...|++..|.+.|++....
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Confidence 33444455666666666655543
No 186
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.37 E-value=0.0026 Score=59.31 Aligned_cols=98 Identities=12% Similarity=0.056 Sum_probs=75.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCH
Q 006630 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506 (638)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~ 506 (638)
-+.+.+++.+|+..|.+.++.. +-|.+-|..-..+|.+.|.++.|++-.+..+..+ +-...+|..|..+|...|++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD---p~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID---PHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC---hHHHHHHHHHHHHHHccCcH
Confidence 3567788888888888888876 6677777778888888888888888888887776 24456888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHH
Q 006630 507 EMAKDVWSCIVTKGCELNVYAWTI 530 (638)
Q Consensus 507 ~~A~~~~~~~~~~~~~p~~~~~~~ 530 (638)
++|++.|++.++. .|+-.+|-.
T Consensus 166 ~~A~~aykKaLel--dP~Ne~~K~ 187 (304)
T KOG0553|consen 166 EEAIEAYKKALEL--DPDNESYKS 187 (304)
T ss_pred HHHHHHHHhhhcc--CCCcHHHHH
Confidence 8888888888774 666665543
No 187
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.37 E-value=0.044 Score=51.73 Aligned_cols=177 Identities=10% Similarity=0.043 Sum_probs=87.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006630 319 LIQALCRMEKMEEANRAFVEMERSGCEADV-VTY---TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394 (638)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 394 (638)
....+.+.|++++|.+.|+++... .|+. ..- -.++.+|.+.+++++|...+++..+..+.-...-+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 333445567777777777777665 2322 111 2345566677777777777777776533322233333333322
Q ss_pred h--c---------------CC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 006630 395 K--K---------------EE---LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454 (638)
Q Consensus 395 ~--~---------------g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 454 (638)
. . .+ ...|...|+.+++ -|=...-..+|...+..+...- ..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~l----a~ 176 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDRL----AK 176 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHHH----HH
Confidence 1 0 01 1122233333332 2222222334433333332210 00
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006630 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI 516 (638)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 516 (638)
.-..+..-|.+.|.+..|+.-|+.+++.-...+.....+..+..+|...|..++|..+...+
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 11234455666777777777777777654332334555666666777777777766665544
No 188
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.37 E-value=0.0024 Score=60.73 Aligned_cols=100 Identities=14% Similarity=0.090 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHH
Q 006630 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN----VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ----PDTF 563 (638)
Q Consensus 492 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~t~ 563 (638)
.|...+....+.|++++|...|+.+++. -|+ ...+-.+..+|...|++++|+..|+.+++. .|+ ...+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl 220 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHH
Confidence 3444444445567888888888887775 233 245556777888888888888888888753 232 4445
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhccc
Q 006630 564 AKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595 (638)
Q Consensus 564 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 595 (638)
..+...+...|+.+.|..+++++++..|+...
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 56666777888888888888888888887654
No 189
>PRK15331 chaperone protein SicA; Provisional
Probab=97.34 E-value=0.0046 Score=52.86 Aligned_cols=85 Identities=13% Similarity=0.063 Sum_probs=48.3
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhH
Q 006630 534 SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLK 609 (638)
Q Consensus 534 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A 609 (638)
-+...|++++|..+|+-+.-.+ .-+..-|..|..+|...+++++|...+..+..+++++|... ..|...|+.++|
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence 3445666666666665554332 12334455555555555666666666666666666665553 456666666666
Q ss_pred HHHHhhhhhh
Q 006630 610 EKAKKQVDGR 619 (638)
Q Consensus 610 ~~~~~~~~~~ 619 (638)
++.|+.+.++
T Consensus 125 ~~~f~~a~~~ 134 (165)
T PRK15331 125 RQCFELVNER 134 (165)
T ss_pred HHHHHHHHhC
Confidence 6666654443
No 190
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.32 E-value=0.0042 Score=55.42 Aligned_cols=103 Identities=22% Similarity=0.287 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhH
Q 006630 242 SLRHFTSLLYGWCKE-----GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316 (638)
Q Consensus 242 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 316 (638)
+-.+|..++..|.+. |..+-....+..|.+-|+.-|..+|+.||+.+=+ |.+- |.. .+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n-~f 108 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN-FF 108 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-HH
Confidence 666677777666643 6677777778888888888888888888876643 2211 111 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006630 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363 (638)
Q Consensus 317 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 363 (638)
.++..-| -.+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 109 Q~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 109 QAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111111 12345577777777777777777777777777665543
No 191
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.01 Score=54.14 Aligned_cols=143 Identities=15% Similarity=0.088 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHH--
Q 006630 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL-- 216 (638)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li-- 216 (638)
++-+++++.+.-.|.|.-...++.+..+.+|. .++.....+.+.-.+.|+.+.|...|++..+..-..|..+++.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e-~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPE-QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCc-ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 45677778888888888888888888877643 466667777777778888888888888665543234444443333
Q ss_pred ---HHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006630 217 ---DALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL 284 (638)
Q Consensus 217 ---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 284 (638)
..|.-.+++..|...|+++....+.|+..-|.-.-+..-.|+...|++.++.|++. .|...+-+++
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 33445667777777787777776777777776666666677888888888888765 4554444433
No 192
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.011 Score=55.71 Aligned_cols=113 Identities=16% Similarity=0.177 Sum_probs=65.4
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHH
Q 006630 157 VWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN---SSVKEAAKLFD 233 (638)
Q Consensus 157 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~ 233 (638)
...-++.-...+|. |.+.|..|...|...|+++.|...|....+.. +++...+..+..++... ....++..+|+
T Consensus 141 l~a~Le~~L~~nP~--d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 141 LIARLETHLQQNPG--DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHhCCC--CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 33334444444544 55666666666666666666666666665542 34444444444444332 22345666666
Q ss_pred HHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 234 EMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272 (638)
Q Consensus 234 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (638)
++....+.|+.+...|...+...|++.+|...++.|.+.
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 666666666666666666666666666666666666655
No 193
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.30 E-value=0.0046 Score=59.85 Aligned_cols=288 Identities=13% Similarity=0.060 Sum_probs=149.7
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHH--Hc--CCC-CCHHHHHHHHH
Q 006630 286 SGYAQMGKMTDAFELLKEMRRKGCDPNA----NSYTVLIQALCRMEKMEEANRAFVEME--RS--GCE-ADVVTYTTLIS 356 (638)
Q Consensus 286 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~--~~--g~~-~~~~~~~~li~ 356 (638)
.-+|+.|+...+..+|+..++.|.. |. ..|..|.++|.-.+++++|+++...=. .. |-+ -...+...|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3478888999999999988887754 43 346666777777788888887653211 00 000 01122223344
Q ss_pred HHHhcCCHHHHHHHHHHH----HHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006630 357 GFCKSRKIDRCYEILDSM----IQRGIL-PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431 (638)
Q Consensus 357 ~~~~~g~~~~A~~~~~~m----~~~~~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 431 (638)
.+--.|.+++|+-.-.+- .+.|-+ .....+..+...|...|+.-.... -.+.|-.++. +-
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~e-v~---------- 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAE-VT---------- 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHH-HH----------
Confidence 444456666665433221 121211 112233334444433332100000 0000100100 00
Q ss_pred CCHHHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCCcHHHHHHHHHHHHH
Q 006630 432 GELKEAVNVWNEMEA----ASL-SPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG----RGLLSAPQYGTLKALLNSLLR 502 (638)
Q Consensus 432 g~~~~A~~~~~~m~~----~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~p~~~~~~~ll~~~~~ 502 (638)
..++.|.++|.+-.+ .|- -.--..|..|...|.-.|++++|+...+.-+. .|-. ......+..+.+++.-
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDr-AaeRRA~sNlgN~hif 247 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDR-AAERRAHSNLGNCHIF 247 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhH-HHHHHhhcccchhhhh
Confidence 112334444432211 110 00112555666666667788888776554322 2210 1223456677778888
Q ss_pred cCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHh
Q 006630 503 AQKVEMAKDVWSCIVTK----GC-ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD----A-DVMPQPDTFAKLMRGLKK 572 (638)
Q Consensus 503 ~g~~~~A~~~~~~~~~~----~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~~~t~~~ll~~~~~ 572 (638)
.|+++.|.+.|+..... |- .....+..+|...|.-...++.|+.++++-+. . ...-....+.+|..++..
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA 327 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 88888888888765433 21 11233445677777777788888888766432 1 112234567788888888
Q ss_pred hcCHHHHHHHHHHHHHHH
Q 006630 573 LYNRQIAAEITEKVRKMA 590 (638)
Q Consensus 573 ~g~~~~A~~~~~~~~~~~ 590 (638)
.|+.++|..++++.++..
T Consensus 328 lg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 328 LGEHRKALYFAELHLRSS 345 (639)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 888888888888776654
No 194
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.26 E-value=0.00094 Score=48.91 Aligned_cols=52 Identities=21% Similarity=0.219 Sum_probs=33.1
Q ss_pred hCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 221 KNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272 (638)
Q Consensus 221 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (638)
+.|++++|+++|+++....|.+...+..++.+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566666666666666655666666666666666666666666666666654
No 195
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.25 E-value=0.099 Score=45.35 Aligned_cols=131 Identities=13% Similarity=0.125 Sum_probs=71.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHH
Q 006630 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494 (638)
Q Consensus 415 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~ 494 (638)
.|+...-..|.......|+..+|...|++...--+.-|......+.++....+++.+|...++.+.+.... .-+..+..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa-~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA-FRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc-cCCCCchH
Confidence 45555555566666666666666666666655444455555556666666666666666666666554311 01112333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006630 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548 (638)
Q Consensus 495 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 548 (638)
.+...+...|++..|+..|+..+.. -|+...-......+.++|+.++|..-+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 4455566666666666666666654 334333333344455556555554433
No 196
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.25 E-value=0.002 Score=47.17 Aligned_cols=63 Identities=21% Similarity=0.339 Sum_probs=45.8
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHH
Q 006630 149 SKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCL 215 (638)
Q Consensus 149 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l 215 (638)
.+.|++++|+++|+++....|. +...+..+..+|.+.|++++|.++++.+... .|+...+..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD--NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT--SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 4677888888888888887765 6777777888888888888888888888766 4554444433
No 197
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.24 E-value=0.0084 Score=53.53 Aligned_cols=105 Identities=17% Similarity=0.316 Sum_probs=67.4
Q ss_pred CCCHHHHHHHHHHHHHc-----CCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 006630 275 EPDIVVYNNLLSGYAQM-----GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVV 349 (638)
Q Consensus 275 ~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 349 (638)
..|..+|..++..|.+. |..+=....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 44666666666666543 4555555666666666777777777777666544 2221 111111111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006630 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398 (638)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 398 (638)
.-| -.+-+-|++++++|...|+.||..|+..+++.+.+.+.
T Consensus 113 ------~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 ------MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ------ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 001 23456789999999999999999999999999977664
No 198
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.23 E-value=0.14 Score=50.33 Aligned_cols=108 Identities=18% Similarity=0.150 Sum_probs=70.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006630 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394 (638)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 394 (638)
+.+..|.-+...|+...|.++-.+.. -||-.-|-..+.+++..++|++-.++... +-++.-|-.++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 34445556666777777777766664 56777777778888888887776654321 113466777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006630 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442 (638)
Q Consensus 395 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 442 (638)
+.|...+|..+...+. +..-+.+|.++|++.+|.+.--
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777777665521 2445667777777777766543
No 199
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.23 E-value=0.25 Score=48.57 Aligned_cols=106 Identities=17% Similarity=0.173 Sum_probs=69.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q 006630 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500 (638)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~ 500 (638)
.+..|.-+...|+...|.++-.+.. .|+-.-|-..+.+|+..+++++-.++... .. +| ..|..++.+|
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kK---sP--IGyepFv~~~ 247 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---KK---SP--IGYEPFVEAC 247 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CC---CC--CChHHHHHHH
Confidence 3444555667777777777766664 57777788888888888888766654332 11 12 3455667777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006630 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548 (638)
Q Consensus 501 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 548 (638)
.+.|+..+|..+...+ + +..-+..|.+.|++.+|.+..
T Consensus 248 ~~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHH
Confidence 8888888877776552 1 133456677888888877653
No 200
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.005 Score=60.05 Aligned_cols=95 Identities=14% Similarity=0.102 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccccc----hh
Q 006630 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFK----MY 600 (638)
Q Consensus 525 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~----~y 600 (638)
..+++.+.-+|.+.+++.+|++..++.++.+ .+|.-.+-.-..+|...|+++.|+..++++++++|+|..+-+ +-
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLK 335 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3456777889999999999999999999765 556677777888999999999999999999999999977642 22
Q ss_pred hhhhhhhhH-HHHHhhhhhhh
Q 006630 601 KRRGERDLK-EKAKKQVDGRK 620 (638)
Q Consensus 601 ~~~g~~~~A-~~~~~~~~~~~ 620 (638)
.+...+++. .++|..|=++.
T Consensus 336 ~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 233333333 44555544333
No 201
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.17 E-value=0.0019 Score=46.74 Aligned_cols=57 Identities=16% Similarity=0.086 Sum_probs=37.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 216 LDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272 (638)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (638)
...+.+.|++++|...|+++.+..|.+...|..+..++...|++++|...|+++++.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445566677777777777766666666666777777777777777777777766654
No 202
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.10 E-value=0.32 Score=47.42 Aligned_cols=223 Identities=14% Similarity=0.102 Sum_probs=103.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHH---hcCC
Q 006630 325 RMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG-ILPNQL--TYLHIMLAHE---KKEE 398 (638)
Q Consensus 325 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~--t~~~ll~~~~---~~g~ 398 (638)
+.|+.+.|.++-+..-..- +-=...+.+.+...|..|+++.|+++++.-.... +.++.. .-..|+.+-. -..+
T Consensus 166 r~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 166 RLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred hcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 4455555555555544331 1123455666666666666666666666554432 222221 1111221111 1123
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006630 399 LEECVELMGEMRKIGCVPDVSNYN-VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477 (638)
Q Consensus 399 ~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 477 (638)
...|...-.+..+. .||..--. .-...+.+.|+..++-.+++.+=+.. |....+... .+.+.|+ .++.-++
T Consensus 245 p~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY--~~ar~gd--ta~dRlk 316 (531)
T COG3898 245 PASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLY--VRARSGD--TALDRLK 316 (531)
T ss_pred hHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHH--HHhcCCC--cHHHHHH
Confidence 33444443333332 33322211 22345666677777777777666553 333332221 1223332 2222233
Q ss_pred HHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHhCCC
Q 006630 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN-GHVKEACSYCLDMMDADV 556 (638)
Q Consensus 478 ~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~ 556 (638)
+.....-..+.+......+..+-...|++..|+.--+..... .|....|..|.+.-... |+-.++...+-+.++..-
T Consensus 317 Ra~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APr 394 (531)
T COG3898 317 RAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPR 394 (531)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCC
Confidence 222211100233444455556666666666666655555443 56666666666654433 666666666666655433
Q ss_pred CC
Q 006630 557 MP 558 (638)
Q Consensus 557 ~p 558 (638)
.|
T Consensus 395 dP 396 (531)
T COG3898 395 DP 396 (531)
T ss_pred CC
Confidence 33
No 203
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.10 E-value=0.0014 Score=48.75 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=44.5
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 533 HSLFSNGHVKEACSYCLDMMDADVMP-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
..|.+.+++++|++.++.++.. .| +...|......+...|++++|.+.++++++..|+++..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 4567777888888888777765 34 34456667777777788888888888888887776654
No 204
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.99 E-value=0.0041 Score=60.24 Aligned_cols=124 Identities=12% Similarity=-0.007 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHh----CCC-CCCHH
Q 006630 492 TLKALLNSLLRAQKVEMAKDVWSCIVTK----GCE-LNVYAWTIWIHSLFSNGHVKEACSYCLDMMD----ADV-MPQPD 561 (638)
Q Consensus 492 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~-~p~~~ 561 (638)
.|..|.+.|.-.|+++.|+...+.-+.. |-. .....+..+..++.-.|+++.|.+.|+.-.. .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 5666777777889999999887654332 211 1245677888999999999999999887543 221 22344
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc-------c---chhhhhhhhhhHHHHHhh
Q 006630 562 TFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT-------F---KMYKRRGERDLKEKAKKQ 615 (638)
Q Consensus 562 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-------~---~~y~~~g~~~~A~~~~~~ 615 (638)
...+|.++|.-..++++|+.++.+=+++..+-... + +.|...|..++|....++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 56788999988899999999999887766543222 1 677788888888776655
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.95 E-value=0.018 Score=54.83 Aligned_cols=98 Identities=16% Similarity=0.168 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHH
Q 006630 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT----DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495 (638)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ 495 (638)
.|...+..+.+.|++++|...|+.+.+.. |+. ..+..+...|...|++++|...|+.+.......+.....+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 34444444445566666666666666542 322 345555666666666666666666666543211222334444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 006630 496 LLNSLLRAQKVEMAKDVWSCIVTK 519 (638)
Q Consensus 496 ll~~~~~~g~~~~A~~~~~~~~~~ 519 (638)
+...+...|+.++|..+|+.+++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445555566666666666665554
No 206
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.93 E-value=0.12 Score=51.26 Aligned_cols=39 Identities=18% Similarity=0.020 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccc
Q 006630 557 MPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595 (638)
Q Consensus 557 ~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 595 (638)
..|-..+.+++.++.-.||+++|.+++++++++.|....
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 345566778888999999999999999999999776554
No 207
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.93 E-value=0.074 Score=53.59 Aligned_cols=116 Identities=9% Similarity=0.078 Sum_probs=76.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHH
Q 006630 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCE-LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP--DTFAKLMRGL 570 (638)
Q Consensus 494 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~ 570 (638)
..+..++.+.|+.++|++.|+++.+.... -+......|+.++...+.+.++..++.+.-+.. -|.+ ..|+..+-..
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-lpkSAti~YTaALLka 341 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-LPKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-CCchHHHHHHHHHHHH
Confidence 44566667888888888888888764211 133456678888888888888888887764322 3443 3366655444
Q ss_pred HhhcC---------------HHHHHHHHHHHHHHHHhccccc----------chhhhhhhhhhHHH
Q 006630 571 KKLYN---------------RQIAAEITEKVRKMAAERQITF----------KMYKRRGERDLKEK 611 (638)
Q Consensus 571 ~~~g~---------------~~~A~~~~~~~~~~~p~~~~~~----------~~y~~~g~~~~A~~ 611 (638)
+..+| ...|.++..++++.+|..|..+ .-+.+.|+ .||..
T Consensus 342 Rav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD-SEAia 406 (539)
T PF04184_consen 342 RAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD-SEAIA 406 (539)
T ss_pred HhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc-HHHHH
Confidence 44443 2346688999999999988764 35667776 55543
No 208
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.84 E-value=0.17 Score=46.49 Aligned_cols=46 Identities=11% Similarity=-0.082 Sum_probs=20.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHH
Q 006630 355 ISGFCKSRKIDRCYEILDSMIQRGIL--PNQLTYLHIMLAHEKKEELE 400 (638)
Q Consensus 355 i~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~t~~~ll~~~~~~g~~~ 400 (638)
...|.+.|.+..|..-++.+++.=.. ........++.++.+.|..+
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 34455666666666666665554111 01123344444555555444
No 209
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.82 E-value=0.62 Score=46.34 Aligned_cols=422 Identities=9% Similarity=0.094 Sum_probs=209.2
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 006630 157 VWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236 (638)
Q Consensus 157 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 236 (638)
-+++=+++. .+|. +..+|-.|+.-+...+.+++..+++++|..- ++--..+|..-+++-...++++....+|.+..
T Consensus 28 ~lrLRerIk-dNPt--nI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL 103 (660)
T COG5107 28 ELRLRERIK-DNPT--NILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCL 103 (660)
T ss_pred HHHHHHHhh-cCch--hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 345555554 3454 8889999999999999999999999999743 23345678877887777889999999998876
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHH-HCCCCCCH-HHHHHHHHHH---HHcCCHh------HHHH
Q 006630 237 ERFKPSLRHFTSLLYGWCKEGKLV------EAKYVLVQMK-DAGFEPDI-VVYNNLLSGY---AQMGKMT------DAFE 299 (638)
Q Consensus 237 ~~~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~m~-~~g~~p~~-~~~~~ll~~~---~~~g~~~------~a~~ 299 (638)
.+ ..+...|...+..-.+.+..- .-.+.|+-.. -.++.|-. ..|+..+... -..|.++ ....
T Consensus 104 ~k-~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~ 182 (660)
T COG5107 104 KK-SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRN 182 (660)
T ss_pred hh-hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 54 336888888887666654221 1122233222 24455533 3444444433 2334444 4445
Q ss_pred HHHHHHHcCCCCCHHhHHHH------HHHHH---hcC----CHHHHHHHHHHHHH--cCCC----CCHHH----------
Q 006630 300 LLKEMRRKGCDPNANSYTVL------IQALC---RME----KMEEANRAFVEMER--SGCE----ADVVT---------- 350 (638)
Q Consensus 300 ~~~~~~~~g~~~~~~~~~~l------i~~~~---~~g----~~~~A~~~~~~m~~--~g~~----~~~~~---------- 350 (638)
.+.+++..-+..=...|+-. ++-.. -.| -+-.|...++++.. .|+. .+..+
T Consensus 183 ~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S 262 (660)
T COG5107 183 GYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDS 262 (660)
T ss_pred HHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccc
Confidence 55555543222111122111 10000 001 13345555555432 1211 11111
Q ss_pred -HHHHHHHHHhc-----C-CHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006630 351 -YTTLISGFCKS-----R-KIDR-CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422 (638)
Q Consensus 351 -~~~li~~~~~~-----g-~~~~-A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 422 (638)
|-..|.--... | -..+ .--++++.... +.-....|.---..+...++-+.|++........ .|.. .-
T Consensus 263 ~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--spsL--~~ 337 (660)
T COG5107 263 NWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPSL--TM 337 (660)
T ss_pred hhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCch--he
Confidence 22222211111 1 1111 11112222221 1112223322233344455555555544433221 1221 11
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--------------CC---------------CCCCHHHHHHHHHHHHhcCCHHHHH
Q 006630 423 VVIRLACKLGELKEAVNVWNEMEA--------------AS---------------LSPGTDSFVVMVHGFLGQGCLIEAC 473 (638)
Q Consensus 423 ~li~~~~~~g~~~~A~~~~~~m~~--------------~~---------------~~p~~~~~~~li~~~~~~g~~~~A~ 473 (638)
.+...|.-..+-+.....|+.... .+ ...-...|...++...+..-++.|.
T Consensus 338 ~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR 417 (660)
T COG5107 338 FLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAAR 417 (660)
T ss_pred eHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHH
Confidence 111122222222222222221110 00 0011234555666666666667777
Q ss_pred HHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHccCCHHHHHHHHHHHH
Q 006630 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAW-TIWIHSLFSNGHVKEACSYCLDMM 552 (638)
Q Consensus 474 ~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~ 552 (638)
.+|-++.+.++. .++...+++++.-+ ..|+...|-.+|+.-..+ -||...| +-.+.-+.+-++-..|..+|+..+
T Consensus 418 ~~F~k~rk~~~~-~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv 493 (660)
T COG5107 418 KLFIKLRKEGIV-GHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSV 493 (660)
T ss_pred HHHHHHhccCCC-CcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhH
Confidence 777777776643 45555566666543 346666777777765554 2333333 445566666777777777777554
Q ss_pred hCCCCCC--HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc
Q 006630 553 DADVMPQ--PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAER 593 (638)
Q Consensus 553 ~~~~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 593 (638)
.. +..+ ..+|..++..-.+-|++..+..+-++..+.-|+.
T Consensus 494 ~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 494 ER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 31 1222 3457777776667777777777777777766664
No 210
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.78 E-value=0.67 Score=46.11 Aligned_cols=422 Identities=10% Similarity=0.064 Sum_probs=233.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHH
Q 006630 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFV 211 (638)
Q Consensus 132 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~ 211 (638)
...+.|..+|-.||.-|...+.+++..+++++|....| .-+.+|..-+++-...+++.....+|.+.+... .+...
T Consensus 36 kdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp--~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldL 111 (660)
T COG5107 36 KDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFP--IMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDL 111 (660)
T ss_pred hcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCc--cccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhH
Confidence 34577888999999999999999999999999986554 456678878887777889999999999888764 44556
Q ss_pred HHHHHHHHHhCCCHH------HHHHHHHHHhc--c-CCCCHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHCC
Q 006630 212 FGCLLDALCKNSSVK------EAAKLFDEMRE--R-FKPSLRHFTSLLYGWC---------KEGKLVEAKYVLVQMKDAG 273 (638)
Q Consensus 212 ~~~li~~~~~~g~~~------~A~~~~~~~~~--~-~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~g 273 (638)
|..-++-..+.+..- ...+.|+-... . .+.....|+..+..+- ++.+++...+.+.+|+..-
T Consensus 112 W~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP 191 (660)
T COG5107 112 WMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTP 191 (660)
T ss_pred HHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCc
Confidence 665555544433111 11222332222 1 2334445655444322 2334455566666666431
Q ss_pred CCC------CHHHHHHHHHHHHH---cC----CHhHHHHHHHHHHH--cCCC----CCHHhHHH-----------HHHHH
Q 006630 274 FEP------DIVVYNNLLSGYAQ---MG----KMTDAFELLKEMRR--KGCD----PNANSYTV-----------LIQAL 323 (638)
Q Consensus 274 ~~p------~~~~~~~ll~~~~~---~g----~~~~a~~~~~~~~~--~g~~----~~~~~~~~-----------li~~~ 323 (638)
+.- |-..|..=++-... .| -+..|.+.++++.. .|+. .+..+++- .|.-=
T Consensus 192 ~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE 271 (660)
T COG5107 192 MGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWE 271 (660)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHh
Confidence 111 11111111111110 01 23445555555532 2321 12222222 12111
Q ss_pred Hhc-----CC-H-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHh
Q 006630 324 CRM-----EK-M-EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML-AHEK 395 (638)
Q Consensus 324 ~~~-----g~-~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~-~~~~ 395 (638)
... |+ . +...-+|++.... +.-....|----.-+...++-+.|+...+.-... .|+ ++..+. .+.-
T Consensus 272 ~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps---L~~~lse~yel 345 (660)
T COG5107 272 MENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS---LTMFLSEYYEL 345 (660)
T ss_pred hcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc---hheeHHHHHhh
Confidence 110 11 1 1111122222211 0112333333333344456666666655443221 222 111111 1111
Q ss_pred cCCHHHHHHHHHHHHH--------------CCC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006630 396 KEELEECVELMGEMRK--------------IGC---------------VPDVSNYNVVIRLACKLGELKEAVNVWNEMEA 446 (638)
Q Consensus 396 ~g~~~~a~~~~~~~~~--------------~~~---------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 446 (638)
..+.+.....|+.+.+ .+. ..-..+|..++..-.+..-++.|..+|-+..+
T Consensus 346 ~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk 425 (660)
T COG5107 346 VNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRK 425 (660)
T ss_pred cccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 1222221111111100 000 11234566777777788889999999999998
Q ss_pred CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 006630 447 AS-LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL-KALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524 (638)
Q Consensus 447 ~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~ 524 (638)
.+ +.+++..+++++.-++. |+..-|..+|+.-+..- ||...| ...+.-+.+.++-+.|+.+|+..+.+ +..+
T Consensus 426 ~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f----~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~ 499 (660)
T COG5107 426 EGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKF----PDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKT 499 (660)
T ss_pred cCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhC----CCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHh
Confidence 88 56788889999987765 67788999998766553 444433 44566778899999999999977655 2223
Q ss_pred --HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006630 525 --VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK 571 (638)
Q Consensus 525 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 571 (638)
...|..||+--..-|+...+..+=++|.+. .|...+.....+-|.
T Consensus 500 q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 500 QLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred hhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 567999999888999999999888888754 566555555554443
No 211
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.76 E-value=0.27 Score=45.06 Aligned_cols=50 Identities=10% Similarity=0.044 Sum_probs=24.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHH
Q 006630 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508 (638)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 508 (638)
+..-|.+.|.+..|..-++.+++.-..++.....+..++.++.+.|..+.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence 44556666666666666666665532111112344455555555555553
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.75 E-value=0.0063 Score=45.91 Aligned_cols=65 Identities=20% Similarity=0.193 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCC---CC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 006630 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDA--DVM---PQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590 (638)
Q Consensus 526 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~---p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 590 (638)
.+++.+..+|...|++++|+..|++.++. ... |+ ..++..+...+...|++++|++++++++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 45677777788888888888888777642 111 22 3457778888888888888888888888764
No 213
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.71 E-value=0.77 Score=45.85 Aligned_cols=194 Identities=14% Similarity=0.183 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHH----cCCHHHHHHHHHHHHHCCCCC
Q 006630 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN-------VVIRLACK----LGELKEAVNVWNEMEAASLSP 451 (638)
Q Consensus 383 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~li~~~~~----~g~~~~A~~~~~~m~~~~~~p 451 (638)
..+|..++....+.++...|.+.+.-+.-. .|+...-. .+.+..+. .-+..+=+.+|+.....++..
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr 375 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR 375 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH
Confidence 347788888888888888888888777653 34333221 22222221 112334455666666554211
Q ss_pred CHHHHHHHH---HHHHhcCC-HHHHHHHHHHHHhCCCCCCCcHHHHHHHH----HHHHH---cCCHHHHHHHHHHHHHcC
Q 006630 452 GTDSFVVMV---HGFLGQGC-LIEACEYFKEMVGRGLLSAPQYGTLKALL----NSLLR---AQKVEMAKDVWSCIVTKG 520 (638)
Q Consensus 452 ~~~~~~~li---~~~~~~g~-~~~A~~~~~~m~~~~~~~~p~~~~~~~ll----~~~~~---~g~~~~A~~~~~~~~~~~ 520 (638)
-..-..|+ .-+-+.|. -++|+++++..++-. +-|...-+.+. .+|.. ...+.+-..+-+-+.+.|
T Consensus 376 -qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft---~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~g 451 (549)
T PF07079_consen 376 -QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT---NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVG 451 (549)
T ss_pred -HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 11112222 23444555 788888888887754 23433332222 22221 222333333333334446
Q ss_pred CCCC----HHHHHHHHHH--HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHH
Q 006630 521 CELN----VYAWTIWIHS--LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584 (638)
Q Consensus 521 ~~p~----~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~ 584 (638)
+.|- ...-|.+.++ +..+|++.++.-+-.-+. .+.|++.+|..++-......++++|-.++.
T Consensus 452 l~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 452 LTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred CCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 6653 3345566554 557889988876655544 357888888888877777788888777664
No 214
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.62 E-value=0.96 Score=45.79 Aligned_cols=420 Identities=11% Similarity=0.077 Sum_probs=208.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHhchhCCCCCCH
Q 006630 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRR-FASARMVKKAIEVLDEMPKYGCEPDE 209 (638)
Q Consensus 131 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~-~~~~~~~~~A~~~~~~m~~~g~~~~~ 209 (638)
...|.+|+..|...+...-+.+.+.+.-.+|..|....|..++ .|.....- |-.+.+++.|.++|.+.++.+ +-++
T Consensus 98 t~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~d--LWI~aA~wefe~n~ni~saRalflrgLR~n-pdsp 174 (568)
T KOG2396|consen 98 TNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPD--LWIYAAKWEFEINLNIESARALFLRGLRFN-PDSP 174 (568)
T ss_pred HHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCch--hHHhhhhhHHhhccchHHHHHHHHHHhhcC-CCCh
Confidence 3457789999999998888888899999999999999887555 44433332 333445999999998888764 3334
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHH--HhccCCCC--------HHHHHHHH------HHHHhc---------CCHHHHH-
Q 006630 210 FVFGCLLDALCKNSSVKEAAKLFDE--MRERFKPS--------LRHFTSLL------YGWCKE---------GKLVEAK- 263 (638)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~--~~~~~~~~--------~~~~~~li------~~~~~~---------g~~~~A~- 263 (638)
..|...+++-.. .+.++..+ .......+ ...|+... .+..+. ....+-.
T Consensus 175 ~Lw~eyfrmEL~-----~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k 249 (568)
T KOG2396|consen 175 KLWKEYFRMELM-----YAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQK 249 (568)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHH
Confidence 455444433211 01111100 00000000 00111100 000000 0011100
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006630 264 YVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343 (638)
Q Consensus 264 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 343 (638)
.+.+.+.. +.+-++.+|.. .|.+.++-.......+ +...-..+.-.-+.+....+|++..+.
T Consensus 250 ~i~d~~~~-~~~~np~~~~~------------laqr~l~i~~~tdl~~----~~~~~~~~~~~~k~s~~~~v~ee~v~~- 311 (568)
T KOG2396|consen 250 NIIDDLQS-KAPDNPLLWDD------------LAQRELEILSQTDLQH----TDNQAKAVEVGSKESRCCAVYEEAVKT- 311 (568)
T ss_pred HHHHHHhc-cCCCCCccHHH------------HHHHHHHHHHHhhccc----hhhhhhchhcchhHHHHHHHHHHHHHH-
Confidence 11111111 11222223322 2222222222211111 111111111111223334666666654
Q ss_pred CCCCHHHHHHHHHHHHhcC------CHHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCC
Q 006630 344 CEADVVTYTTLISGFCKSR------KIDRCYEILDSMIQR-GILPN-QLTYLHIMLAHEKKEELEE-CVELMGEMRKIGC 414 (638)
Q Consensus 344 ~~~~~~~~~~li~~~~~~g------~~~~A~~~~~~m~~~-~~~p~-~~t~~~ll~~~~~~g~~~~-a~~~~~~~~~~~~ 414 (638)
-|+...|+..|..|...- .+..-+.+++...+. +..++ ...|..+...++......+ |..+..+ ++
T Consensus 312 -l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e----~f 386 (568)
T KOG2396|consen 312 -LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTE----LF 386 (568)
T ss_pred -hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHH----Hh
Confidence 456667777776665432 333444555554443 23332 3345555444444443222 2222222 23
Q ss_pred CCCHHHHHHHHHHHHHcC-CHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-H-HHHHHHhCCCCCCCcH
Q 006630 415 VPDVSNYNVVIRLACKLG-ELK-EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC-E-YFKEMVGRGLLSAPQY 490 (638)
Q Consensus 415 ~~~~~~~~~li~~~~~~g-~~~-~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~-~~~~m~~~~~~~~p~~ 490 (638)
..+...|-.-+....+.. ++. .-...|+.....-..+....|+... +...+.... . ++..+...+ .|+.
T Consensus 387 ~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~----~~dsl~~~~~~~Ii~a~~s~~---~~~~ 459 (568)
T KOG2396|consen 387 RDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS----EGDSLQEDTLDLIISALLSVI---GADS 459 (568)
T ss_pred cchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh----hccchhHHHHHHHHHHHHHhc---CCce
Confidence 445555544444333221 111 1222333343322233334454444 111122221 1 222222222 3554
Q ss_pred HHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HccCCHHHHHHHHHHHHh-CCCCCCHHHHHH
Q 006630 491 GTL-KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL---FSNGHVKEACSYCLDMMD-ADVMPQPDTFAK 565 (638)
Q Consensus 491 ~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~-~~~~p~~~t~~~ 565 (638)
.|+ +.++..+...|-+..|+.++..+... .+|....|.-+|..- ...| ..-+..+|+.|.. .| .|+..|..
T Consensus 460 ~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d~~lw~~ 535 (568)
T KOG2396|consen 460 VTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG--ADSDLWMD 535 (568)
T ss_pred eehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CChHHHHH
Confidence 444 45677788899999999999999876 466788888877542 2233 7778888988876 55 77888888
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHH-HHh
Q 006630 566 LMRGLKKLYNRQIAAEITEKVRKM-AAE 592 (638)
Q Consensus 566 ll~~~~~~g~~~~A~~~~~~~~~~-~p~ 592 (638)
.+.--..+|..+.+-.++-++.+. +|+
T Consensus 536 y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 536 YMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHHhhccCCCcccccHHHHHHHHhhChh
Confidence 888778889999998888888764 444
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.59 E-value=0.058 Score=46.53 Aligned_cols=70 Identities=20% Similarity=0.229 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 006630 211 VFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD-----AGFEPDIVV 280 (638)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 280 (638)
+...++..+...|++++|..+.+.+....|-|...|..+|.+|...|+..+|.+.|+++.. .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444555566667777777777766666666666777777777777777777766666542 355665544
No 216
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.53 E-value=0.91 Score=47.26 Aligned_cols=86 Identities=14% Similarity=0.135 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----------
Q 006630 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD---------- 454 (638)
Q Consensus 385 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---------- 454 (638)
+...+...+-+...+..|.++|..|-.. ..++++....+++++|..+-+..++. .||+.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhh
Confidence 3444444444555555666666655421 34556666677777777766665543 23321
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006630 455 -SFVVMVHGFLGQGCLIEACEYFKEMVG 481 (638)
Q Consensus 455 -~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (638)
-|.---.+|.+.|+-.||.++++++..
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 111112344455555666666655543
No 217
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.48 E-value=0.15 Score=52.74 Aligned_cols=89 Identities=15% Similarity=0.202 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCCHHHHHHH---------HHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHH
Q 006630 316 YTVLIQALCRMEKMEEANRA---------FVEMERSGCEADVVTYTTLISGFCKSRK--IDRCYEILDSMIQRGILPNQL 384 (638)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~---------~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~ 384 (638)
+.+-+-.|...|.+++|.++ ++.+... ..+...++..=.+|.+..+ +-+.+.-+++|.++|-.|+..
T Consensus 559 ~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i 636 (1081)
T KOG1538|consen 559 QSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDL 636 (1081)
T ss_pred ccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH
Confidence 34444456666766666543 1111111 1123334444455655444 334455567788888888775
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 006630 385 TYLHIMLAHEKKEELEECVELMGEM 409 (638)
Q Consensus 385 t~~~ll~~~~~~g~~~~a~~~~~~~ 409 (638)
. +...|+-.|++.+|.++|.+-
T Consensus 637 L---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 637 L---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred H---HHHHHHhhhhHHHHHHHHHHc
Confidence 4 345566778888888877653
No 218
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.46 E-value=0.0032 Score=41.28 Aligned_cols=40 Identities=10% Similarity=0.232 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccccchh
Q 006630 561 DTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMY 600 (638)
Q Consensus 561 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~y 600 (638)
.+|..+..+|...|++++|+++++++++.+|+++.+...+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 3567788888888888888888888888888888765443
No 219
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.35 E-value=0.86 Score=42.23 Aligned_cols=227 Identities=18% Similarity=0.095 Sum_probs=129.9
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006630 362 RKIDRCYEILDSMIQRGIL-PNQLTYLHIMLAHEKKEELEECVELMGEMRKI-GCVPDVSNYNVVIRLACKLGELKEAVN 439 (638)
Q Consensus 362 g~~~~A~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 439 (638)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...+....+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3344444444444433221 12344455555556666666666665555431 223444455555556666666777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006630 440 VWNEMEAASLSPGTDSFVVMVH-GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518 (638)
Q Consensus 440 ~~~~m~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 518 (638)
.+.........+ ......... .+...|++++|...+.+..............+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 777666543222 122222233 567777777777777777552200001233333344445667788888888887776
Q ss_pred cCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 519 KGCEL-NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 519 ~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
.. .. ....+..+...+...+++++|...+...... .|+ ...+..+...+...++.+.+...+.+.++..|.
T Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 52 22 3566777777777888888888888777654 343 344444555555556788888888888888776
No 220
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.35 E-value=0.023 Score=42.09 Aligned_cols=56 Identities=13% Similarity=0.029 Sum_probs=33.3
Q ss_pred HHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 217 DALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272 (638)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (638)
..|.+.+++++|.++++.+....|.+...|......+.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34555566666666666665555555566666666666666666666666665554
No 221
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.25 E-value=0.4 Score=44.36 Aligned_cols=162 Identities=14% Similarity=0.157 Sum_probs=86.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc--H
Q 006630 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG---TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ--Y 490 (638)
Q Consensus 416 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~--~ 490 (638)
|-...|+.-+. -.+.|++++|.+.|+.+.... +-+ ..+-..++-++.+.+++++|+..+++.+..... .|+ .
T Consensus 33 p~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~-~~n~dY 109 (254)
T COG4105 33 PASELYNEGLT-ELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT-HPNADY 109 (254)
T ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC-CCChhH
Confidence 33444554443 456788888888888887653 222 245556667777888888888888888876532 233 3
Q ss_pred HHHHHHHHHHH----HcCCHHH---HHHHHHHHHHcCCCCCHHH------------------HHHHHHHHHccCCHHHHH
Q 006630 491 GTLKALLNSLL----RAQKVEM---AKDVWSCIVTKGCELNVYA------------------WTIWIHSLFSNGHVKEAC 545 (638)
Q Consensus 491 ~~~~~ll~~~~----~~g~~~~---A~~~~~~~~~~~~~p~~~~------------------~~~li~~~~~~g~~~~A~ 545 (638)
..|...+.-+. ...+... |..-|++++.+ =||..- =..+..-|.+.|.+..|.
T Consensus 110 ~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 110 AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 33333333222 1223333 33444444443 344210 011233455566666666
Q ss_pred HHHHHHHhCCCCCC----HHHHHHHHHHHHhhcCHHHHHHHHH
Q 006630 546 SYCLDMMDADVMPQ----PDTFAKLMRGLKKLYNRQIAAEITE 584 (638)
Q Consensus 546 ~~~~~m~~~~~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~ 584 (638)
.-+++|++. -|+ ...+..+..+|...|-.++|.+...
T Consensus 188 nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 188 NRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred HHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 666666553 221 1224445556666666666655544
No 222
>PRK15331 chaperone protein SicA; Provisional
Probab=96.20 E-value=0.37 Score=41.48 Aligned_cols=87 Identities=14% Similarity=-0.006 Sum_probs=47.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 006630 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542 (638)
Q Consensus 463 ~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 542 (638)
+.+.|++++|..+|.-+...+. -+..-+..|..+|...+++++|...|......+. -|+..+-....+|...|+.+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~---~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDF---YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 4455666666666666555442 3333445555555566666666666665544421 13333334455666666666
Q ss_pred HHHHHHHHHHh
Q 006630 543 EACSYCLDMMD 553 (638)
Q Consensus 543 ~A~~~~~~m~~ 553 (638)
.|...|+..++
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 66666655554
No 223
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.17 E-value=0.055 Score=50.39 Aligned_cols=102 Identities=22% Similarity=0.265 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCC-HHHHHH
Q 006630 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKG----CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA-DVMPQ-PDTFAK 565 (638)
Q Consensus 492 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~-~~t~~~ 565 (638)
.|...+. +.+.|++..|...|...++.. ..|+... -|..++...|++++|..+|..+.+. +-.|- +..+..
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~y--WLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYY--WLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHH--HHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 3544443 345677888888888887762 2333333 4778888888888888888888763 22232 466777
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 566 LMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 566 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
|.......|+.++|..+++++++..|+.+.+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 7777888889999999999888888876654
No 224
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.15 E-value=1.1 Score=41.44 Aligned_cols=130 Identities=11% Similarity=0.014 Sum_probs=60.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-----HHHHH
Q 006630 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN-----VVIRL 427 (638)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~li~~ 427 (638)
.++..+.-.|.+.-.+..+.+.++...+.++.....+.+...+.|+.+.|...|+...+..-..+..+.+ .....
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 3444444444444455555555544434444444444444445555555555555443321122222222 22223
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006630 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483 (638)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 483 (638)
|.-.+++..|...|.+++..+ +.|+..-|.-.-++.-.|+..+|++..+.|.+..
T Consensus 262 ~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 262 HLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred eecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 444555556666666655554 3344444443333444556666666666665543
No 225
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.11 E-value=2.2 Score=44.48 Aligned_cols=144 Identities=10% Similarity=0.060 Sum_probs=100.3
Q ss_pred HHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCC
Q 006630 125 YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYG 204 (638)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 204 (638)
..|... +...-+...|+.+|.---.....+.+..+++.+....|. -..-|......=.+.|..+.+..+|++.+ .|
T Consensus 33 ~~we~~-~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl--~~gyW~kfA~~E~klg~~~~s~~Vfergv-~a 108 (577)
T KOG1258|consen 33 DYWEIL-SNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPL--CYGYWKKFADYEYKLGNAENSVKVFERGV-QA 108 (577)
T ss_pred hHhhcc-ccchhcccchHHHHhccCchhHHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHHhhhHHHHHHHHHHHH-Hh
Confidence 345543 334556677888877666666667788888888877654 22334444444457788899999999877 45
Q ss_pred CCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 205 CEPDEFVFGCLLDALCK-NSSVKEAAKLFDEMRER---FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272 (638)
Q Consensus 205 ~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (638)
++.+...|...+..++. .|+.+.....|+....- .--+...|...|..-..++++.....++++.++.
T Consensus 109 ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 109 IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 66677777766655544 57788888888877653 2224567888888888888899999999988863
No 226
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.10 E-value=0.02 Score=50.00 Aligned_cols=96 Identities=15% Similarity=0.187 Sum_probs=61.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 006630 498 NSLLRAQKVEMAKDVWSCIVTKGCELN-----VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP-DTFAKLMRGLK 571 (638)
Q Consensus 498 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~ 571 (638)
+-+.+.|++++|..-|..++.. +++. .+.|..-..++.+.+.++.|+.-+.+.++. .|+. ..+..-..+|.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAEAYE 179 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHHHHH
Confidence 4466778888888888777775 2222 223444455677777788887777777654 3422 22333344677
Q ss_pred hhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 572 KLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 572 ~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
+...++.|.+-|+++++.+|....+
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHH
Confidence 7777888888888888887776544
No 227
>PRK11906 transcriptional regulator; Provisional
Probab=96.07 E-value=0.18 Score=50.89 Aligned_cols=88 Identities=8% Similarity=-0.121 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhhcCHHHHHHHHH
Q 006630 506 VEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP-DTFAKLMRGLKKLYNRQIAAEITE 584 (638)
Q Consensus 506 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g~~~~A~~~~~ 584 (638)
..+|.+..+++++.+.. |......+..++...|+++.|..+|++.... .||. .+|......+.-.|+.++|.+..+
T Consensus 320 ~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 320 AQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34555555556555322 5555555666666666666666666666543 4542 334444444555566777777777
Q ss_pred HHHHHHHhcccc
Q 006630 585 KVRKMAAERQIT 596 (638)
Q Consensus 585 ~~~~~~p~~~~~ 596 (638)
++++++|....+
T Consensus 397 ~alrLsP~~~~~ 408 (458)
T PRK11906 397 KSLQLEPRRRKA 408 (458)
T ss_pred HHhccCchhhHH
Confidence 766666665443
No 228
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.04 E-value=0.021 Score=43.03 Aligned_cols=61 Identities=13% Similarity=0.128 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006630 492 TLKALLNSLLRAQKVEMAKDVWSCIVTK----GC-ELN-VYAWTIWIHSLFSNGHVKEACSYCLDMM 552 (638)
Q Consensus 492 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 552 (638)
++..+...|...|++++|+..|++.++. |. .|+ ..++..+..++...|++++|++++++.+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444555555555555555554432 11 111 3345555666666666666666665544
No 229
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.01 E-value=0.42 Score=50.05 Aligned_cols=161 Identities=15% Similarity=0.092 Sum_probs=87.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhccCCC-C------HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006630 213 GCLLDALCKNSSVKEAAKLFDEMRERFKP-S------LRHFTSLLYGWCK----EGKLVEAKYVLVQMKDAGFEPDIVVY 281 (638)
Q Consensus 213 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~------~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~ 281 (638)
..++....=.|+-+.+++.+....+.... . ...|...+..++- ....+.|.+++..+.+. -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 34455555556666666666554332100 0 1123333333332 34566777777777765 4565555
Q ss_pred HHH-HHHHHHcCCHhHHHHHHHHHHHcC---CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 006630 282 NNL-LSGYAQMGKMTDAFELLKEMRRKG---CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS- 356 (638)
Q Consensus 282 ~~l-l~~~~~~g~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~- 356 (638)
... .+.+...|++++|.+.|+...... .+.....+--+.-.+.-..++++|.+.|..+.+.. ..+...|.-+..
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 433 344555677777777777554311 11122334445556777788888888888888653 223333333322
Q ss_pred HHHhcCCH-------HHHHHHHHHHHH
Q 006630 357 GFCKSRKI-------DRCYEILDSMIQ 376 (638)
Q Consensus 357 ~~~~~g~~-------~~A~~~~~~m~~ 376 (638)
++...|+. ++|.++|.+...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 33456666 788888877654
No 230
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.00 E-value=1.7 Score=42.20 Aligned_cols=123 Identities=13% Similarity=0.087 Sum_probs=59.2
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHH-------HHHHhcC-CHHHHHHHHHhchhC--------CCCCCH---
Q 006630 149 SKMRKFGAVWALMEEMRKEKPQLITTEVFVILM-------RRFASAR-MVKKAIEVLDEMPKY--------GCEPDE--- 209 (638)
Q Consensus 149 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li-------~~~~~~~-~~~~A~~~~~~m~~~--------g~~~~~--- 209 (638)
.+.|+++.|..++.+.....+ ..++.....+. ......+ +++.|..++++..+. ...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 366777778777777765431 12222222222 2223344 666665555443321 112222
Q ss_pred --HHHHHHHHHHHhCCCHH---HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 210 --FVFGCLLDALCKNSSVK---EAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272 (638)
Q Consensus 210 --~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (638)
.++..|+.+|...+..+ +|..+++.+...++.....+-.-+..+.+.++.+++.+.+.+|+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 23445555555544433 3444444444444434444545555555556666666666666553
No 231
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.93 E-value=1.8 Score=43.16 Aligned_cols=33 Identities=21% Similarity=0.187 Sum_probs=17.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006630 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288 (638)
Q Consensus 256 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 288 (638)
.|+.++|++++..+....-.++..+|..+.+.|
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 455555555555544433345555555554444
No 232
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.92 E-value=0.46 Score=45.36 Aligned_cols=114 Identities=9% Similarity=-0.029 Sum_probs=53.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCCHHH
Q 006630 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV----VMVHGFLGQGCLIE 471 (638)
Q Consensus 396 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~----~li~~~~~~g~~~~ 471 (638)
.|+..+|...++++.+. +|.|...++..=++|.-.|+.+.-...++++...- .+|...|. ...-++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccchh
Confidence 44555555555555443 34455555555555555555555555555554331 12221111 22333444555555
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006630 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514 (638)
Q Consensus 472 A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 514 (638)
|.+.-++..+.+ +-|.-.-.++...+--.|+..++.++..
T Consensus 194 AEk~A~ralqiN---~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 194 AEKQADRALQIN---RFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred HHHHHHhhccCC---CcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 555555555444 2333333444444445555555555543
No 233
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.88 E-value=0.25 Score=41.44 Aligned_cols=21 Identities=10% Similarity=-0.001 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhcccc
Q 006630 576 RQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 576 ~~~A~~~~~~~~~~~p~~~~~ 596 (638)
...|...++.+++.-|+++.+
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHHHHHCcCChhH
Confidence 557777777777777776554
No 234
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.82 E-value=0.23 Score=41.19 Aligned_cols=100 Identities=12% Similarity=0.045 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006630 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531 (638)
Q Consensus 452 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 531 (638)
|..++..++.++++.|+.+....+.+..-.-++ .... ..+. .-......|+.....++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~--~~~~-----------~~~~---------~~~~spl~Pt~~lL~AI 58 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDV--NGKK-----------KEGD---------YPPSSPLYPTSRLLIAI 58 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCC--CCcc-----------ccCc---------cCCCCCCCCCHHHHHHH
Confidence 345666677777777777666666654432221 0000 0000 01122467888899999
Q ss_pred HHHHHccCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhh
Q 006630 532 IHSLFSNGHVKEACSYCLDMMD-ADVMPQPDTFAKLMRGLKKL 573 (638)
Q Consensus 532 i~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~t~~~ll~~~~~~ 573 (638)
+.+|+.+|++..|+++++...+ .++.-+..+|..|+.-+...
T Consensus 59 v~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 59 VHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999988865 66777788899888855544
No 235
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.81 E-value=0.11 Score=44.79 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=18.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006630 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515 (638)
Q Consensus 463 ~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 515 (638)
+...|++++|+.+.+.+.... |-+...+..++.++...|+..+|.++|+.
T Consensus 72 ~~~~~~~~~a~~~~~~~l~~d---P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~ 121 (146)
T PF03704_consen 72 LLEAGDYEEALRLLQRALALD---PYDEEAYRLLMRALAAQGRRAEALRVYER 121 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS---TT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 333344444444444333333 22333333334444444444444433333
No 236
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.78 E-value=0.11 Score=42.97 Aligned_cols=95 Identities=12% Similarity=0.085 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 006630 138 YDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217 (638)
Q Consensus 138 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 217 (638)
..++..+|-++++.|+.+....+++..-..+..... ..+. .-......|+..+..+++.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~------------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKK------------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCcc------------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 345666677777777777666666554322211000 0000 1122344566666666666
Q ss_pred HHHhCCCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHH
Q 006630 218 ALCKNSSVKEAAKLFDEMRER--FKPSLRHFTSLLYGW 253 (638)
Q Consensus 218 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~li~~~ 253 (638)
+|+..|++..|.++.+.+.+. .+-...+|..|+.-.
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 666666666666666555443 333455555555543
No 237
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.76 E-value=0.22 Score=50.12 Aligned_cols=70 Identities=17% Similarity=0.004 Sum_probs=59.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhchhC
Q 006630 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITT-EVFVILMRRFASARMVKKAIEVLDEMPKY 203 (638)
Q Consensus 134 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 203 (638)
.+.+...|+.+..+|.+.|++++|+..|++....+|..... .+|..+..+|...|++++|++.+++.++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35577889999999999999999999999998888763322 45888999999999999999999998875
No 238
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.72 E-value=2.6 Score=42.31 Aligned_cols=388 Identities=13% Similarity=0.150 Sum_probs=191.2
Q ss_pred HhcCChhHHHHHHHHHHhc--C--CCCCCHHH--------H-HHHHHHHHhcCCHHHHHHHHHhchhC----CCCCCHHH
Q 006630 149 SKMRKFGAVWALMEEMRKE--K--PQLITTEV--------F-VILMRRFASARMVKKAIEVLDEMPKY----GCEPDEFV 211 (638)
Q Consensus 149 ~~~~~~~~A~~~~~~m~~~--~--~~~~~~~~--------~-~~li~~~~~~~~~~~A~~~~~~m~~~----g~~~~~~~ 211 (638)
-+.+.+.+|.+.+..-... + +...+... + +..+.++...|++.+++.++++|... .+.-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 3667777777777655543 1 11111111 1 33455666677777777766665432 33356667
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhccCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006630 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSL-RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290 (638)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 290 (638)
|+.++-++.+. .|-++.+...-|. .-|--++-.|.+.=+.-+ .-.-..+.|.......++....-
T Consensus 170 yd~~vlmlsrS--------YfLEl~e~~s~dl~pdyYemilfY~kki~~~d------~~~Y~k~~peeeL~s~imqhlfi 235 (549)
T PF07079_consen 170 YDRAVLMLSRS--------YFLELKESMSSDLYPDYYEMILFYLKKIHAFD------QRPYEKFIPEEELFSTIMQHLFI 235 (549)
T ss_pred HHHHHHHHhHH--------HHHHHHHhcccccChHHHHHHHHHHHHHHHHh------hchHHhhCcHHHHHHHHHHHHHh
Confidence 77666666542 2222222111111 112233333332211111 10001123333333333333222
Q ss_pred cC--CHhHHHHHHHHHHHcCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCC
Q 006630 291 MG--KMTDAFELLKEMRRKGCDPNAN-SYTVLIQALCRMEKMEEANRAFVEMERSGC----EADVVTYTTLISGFCKSRK 363 (638)
Q Consensus 291 ~g--~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~~~~~~~~~li~~~~~~g~ 363 (638)
.. ...--.++++.-...-+.|+-. +...|+..+.+ +.+++..+-+.+....+ +.=+.++..++....+.++
T Consensus 236 ~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~ 313 (549)
T PF07079_consen 236 VPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQ 313 (549)
T ss_pred CCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 2222334444444444555533 23344444443 55555555554443211 1124567778888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHH----------HHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH---HHH
Q 006630 364 IDRCYEILDSMIQRGILPNQL----------TYLHIMLA-HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR---LAC 429 (638)
Q Consensus 364 ~~~A~~~~~~m~~~~~~p~~~----------t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~---~~~ 429 (638)
...|-..+.-+.-- .|+.. ++..++.. =...-+...-+.+++.+...++.. ......|+. -+-
T Consensus 314 T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW 390 (549)
T PF07079_consen 314 TEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLW 390 (549)
T ss_pred HHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHH
Confidence 88888887766543 22222 22211110 001112333344555554433211 112222222 234
Q ss_pred HcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHhCCCCCCCc----HHHHHHHH
Q 006630 430 KLGE-LKEAVNVWNEMEAASLSPGTDSFVVMV----HGFLG---QGCLIEACEYFKEMVGRGLLSAPQ----YGTLKALL 497 (638)
Q Consensus 430 ~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~~~~~~p~----~~~~~~ll 497 (638)
+.|. -++|+.+++.+.+-. +-|...-|.+. ..|.+ ...+..-+.+-+-..+.|+ +|- ...-+.|.
T Consensus 391 ~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl--~~i~i~e~eian~La 467 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGL--TPITISEEEIANFLA 467 (549)
T ss_pred hcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC--CcccccHHHHHHHHH
Confidence 4555 788999999888753 34444433322 22322 1223333333333445666 332 22333333
Q ss_pred HH--HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006630 498 NS--LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAK 565 (638)
Q Consensus 498 ~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 565 (638)
+| +...|++.++.-.-.-+.+ +.|.+.+|..++-++....++++|..++..+ +|+..++.+
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 33 4578999998766555555 6899999999999999999999999998764 566666543
No 239
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.70 E-value=0.02 Score=34.88 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc
Q 006630 561 DTFAKLMRGLKKLYNRQIAAEITEKVRKMAAER 593 (638)
Q Consensus 561 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 593 (638)
.+|..+...+...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 467788888888899999999999999988874
No 240
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.68 E-value=0.64 Score=44.91 Aligned_cols=230 Identities=12% Similarity=0.085 Sum_probs=108.9
Q ss_pred HHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHHHH
Q 006630 358 FCKSRKIDRCYEILDSMIQR--GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI--GCVPDV---SNYNVVIRLACK 430 (638)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~--~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~---~~~~~li~~~~~ 430 (638)
+....+.++|+..+..-..+ +..---.++..+..+.++.|.+++++..--..+.. ...... ..|-.+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888777766553 11112345556666677777666655432221111 011111 122222233333
Q ss_pred cCCHHHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCC--cHHHHHHHHHHHHHc
Q 006630 431 LGELKEAVNVWNEMEAA-SLSPG---TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL-SAP--QYGTLKALLNSLLRA 503 (638)
Q Consensus 431 ~g~~~~A~~~~~~m~~~-~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~p--~~~~~~~ll~~~~~~ 503 (638)
..++.+++.+-..-... |..|. .....+|..++...+.++++++.|+...+.-.. ..| ...++..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 33333333333322211 11110 112334555555566677777777766553110 011 233566666666777
Q ss_pred CCHHHHHHHHHHHHHc----CCCCCH-HHHH-----HHHHHHHccCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHH
Q 006630 504 QKVEMAKDVWSCIVTK----GCELNV-YAWT-----IWIHSLFSNGHVKEACSYCLDMMD----ADVMPQ-PDTFAKLMR 568 (638)
Q Consensus 504 g~~~~A~~~~~~~~~~----~~~p~~-~~~~-----~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~t~~~ll~ 568 (638)
.++++|.-+..++.+. ++. |. .-|. .|.-+|...|..-+|.+..++..+ .|-.|- ......+.+
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 7777766665555432 221 11 1122 233355566666666666665533 332221 122445566
Q ss_pred HHHhhcCHHHHHHHHHHHHH
Q 006630 569 GLKKLYNRQIAAEITEKVRK 588 (638)
Q Consensus 569 ~~~~~g~~~~A~~~~~~~~~ 588 (638)
.|+..|+.|.|..-|+.+..
T Consensus 255 IyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHhcccHhHHHHHHHHHHH
Confidence 66666777666655555543
No 241
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.62 E-value=0.24 Score=46.25 Aligned_cols=98 Identities=18% Similarity=0.166 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHH
Q 006630 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSP---GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496 (638)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~l 496 (638)
.|+.-++ +.+.|++..|...|....+.. +- ....+--|...+...|++++|..+|..+.+.....+--+.++..|
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 5666665 456778899999888888763 21 124566678888888999999888888887654433345677778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 006630 497 LNSLLRAQKVEMAKDVWSCIVTK 519 (638)
Q Consensus 497 l~~~~~~g~~~~A~~~~~~~~~~ 519 (638)
..+..+.|+.++|...|+++.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 88888888888888888888776
No 242
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.61 E-value=2.5 Score=41.47 Aligned_cols=291 Identities=15% Similarity=0.103 Sum_probs=134.5
Q ss_pred HHHHHHHHH--hcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHhchhCCCCCCHHH--HHH
Q 006630 141 YRALIKSLS--KMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFA--SARMVKKAIEVLDEMPKYGCEPDEFV--FGC 214 (638)
Q Consensus 141 ~~~li~~~~--~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~--~~~~~~~A~~~~~~m~~~g~~~~~~~--~~~ 214 (638)
|.+|-.++. -.|+-..|.++-.+..+.- .-|...+..++.+-. -.|+++.|.+-|+.|... |.... ...
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~ll--ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLL--SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhh--hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 445544443 3456666666655443221 123333333443322 357777777777777642 22211 122
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHH--HHHHHHHHHH-
Q 006630 215 LLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAG-FEPDIVV--YNNLLSGYAQ- 290 (638)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~--~~~ll~~~~~- 290 (638)
|.-.--+.|..+.|...-+..-..-+.-...+.+.+...|..|+++.|+++.+.-+... +.++..- -..|+.+-+.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 22222356777777777666655555556677777777777777777777777655432 2333221 1122221111
Q ss_pred --cCCHhHHHHHHHHHHHcCCCCCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006630 291 --MGKMTDAFELLKEMRRKGCDPNANS-YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367 (638)
Q Consensus 291 --~g~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 367 (638)
..+...|...-.+..+ +.||..- -..-...+.+.|++.++-.+++.+-+. .|.+..+...+ +.+.|+ -+
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~lY~--~ar~gd--ta 311 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALLYV--RARSGD--TA 311 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHHHH--HhcCCC--cH
Confidence 1234444444333333 2333221 122334556666666666666666655 33333332211 223333 22
Q ss_pred HHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Q 006630 368 YEILDSMIQR-GILP-NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC-KLGELKEAVNVWNEM 444 (638)
Q Consensus 368 ~~~~~~m~~~-~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m 444 (638)
+.-+++..+. .++| +..+...+..+....|++..|..--+..... .|....|-.|.+.-. ..|+-.++...+.+.
T Consensus 312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 2222222211 1222 2334444444445555555544444333332 344444444444322 225555555555444
Q ss_pred HH
Q 006630 445 EA 446 (638)
Q Consensus 445 ~~ 446 (638)
.+
T Consensus 390 v~ 391 (531)
T COG3898 390 VK 391 (531)
T ss_pred hc
Confidence 43
No 243
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.61 E-value=3.5 Score=43.02 Aligned_cols=105 Identities=10% Similarity=0.216 Sum_probs=72.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHhchhC-CCC-CC
Q 006630 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFA-SARMVKKAIEVLDEMPKY-GCE-PD 208 (638)
Q Consensus 132 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~-~~~~~~~A~~~~~~m~~~-g~~-~~ 208 (638)
+.|+-..--|......=.+.|..+.+.++|++-...-| .+...|...+..+. ..|+.+.....|+..... |.. ..
T Consensus 73 ~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip--~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S 150 (577)
T KOG1258|consen 73 SKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIP--LSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLS 150 (577)
T ss_pred hhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhc
Confidence 34444444566666666788899999999998877544 35566665555444 457788888888887754 432 23
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhcc
Q 006630 209 EFVFGCLLDALCKNSSVKEAAKLFDEMRER 238 (638)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 238 (638)
...|-..|..-..++++.....+++++.+-
T Consensus 151 ~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 151 DPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred cHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 456777777777788888888999888763
No 244
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.59 E-value=0.21 Score=50.29 Aligned_cols=62 Identities=19% Similarity=0.081 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 006630 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDE----FVFGCLLDALCKNSSVKEAAKLFDEMR 236 (638)
Q Consensus 173 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~ 236 (638)
+...++.+..+|...|++++|+..|++.++. .|+. .+|..+..+|.+.|++++|+..+++..
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555555555554443 2321 234445555555555555555554443
No 245
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.59 E-value=2.3 Score=41.33 Aligned_cols=46 Identities=15% Similarity=0.149 Sum_probs=23.3
Q ss_pred HcCCHhHHHHHHHHHHHc--CCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 006630 290 QMGKMTDAFELLKEMRRK--GCDPNANSYTVLIQALCRMEKMEEANRA 335 (638)
Q Consensus 290 ~~g~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~ 335 (638)
...+.+.|+..+.....+ ....-..++..+.++.++.|.+++++..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~ 65 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF 65 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence 445566666666554433 1111234455556666666666555443
No 246
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.56 E-value=0.077 Score=43.04 Aligned_cols=93 Identities=14% Similarity=0.068 Sum_probs=65.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhhcC
Q 006630 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP---DTFAKLMRGLKKLYN 575 (638)
Q Consensus 499 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~t~~~ll~~~~~~g~ 575 (638)
++...|+++.|++.|.+.+.. .+.....||.-..++.-+|+.++|+.-+++.++..-.-.. ..|..-...|+..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 456778888888888888776 2336777888888888888888888888888763211121 124444456777788
Q ss_pred HHHHHHHHHHHHHHHHh
Q 006630 576 RQIAAEITEKVRKMAAE 592 (638)
Q Consensus 576 ~~~A~~~~~~~~~~~p~ 592 (638)
.+.|+.-++.+-+++..
T Consensus 131 dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSK 147 (175)
T ss_pred hHHHHHhHHHHHHhCCH
Confidence 88888888888777654
No 247
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.47 E-value=0.35 Score=50.60 Aligned_cols=128 Identities=15% Similarity=0.092 Sum_probs=60.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----------hcCCHHHHHHHHHHHHhCCCCCCCcHH
Q 006630 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL----------GQGCLIEACEYFKEMVGRGLLSAPQYG 491 (638)
Q Consensus 422 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~----------~~g~~~~A~~~~~~m~~~~~~~~p~~~ 491 (638)
..++....=.|+-+.+++.+.+..+.+-.-.+..--.|+.-|. .....+.|.++++.+...- |+..
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y----P~s~ 267 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY----PNSA 267 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC----CCcH
Confidence 4445555556777777777766554321111111111111110 1334555666666666553 4444
Q ss_pred HHHHH-HHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006630 492 TLKAL-LNSLLRAQKVEMAKDVWSCIVTKG---CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553 (638)
Q Consensus 492 ~~~~l-l~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 553 (638)
.|... .+.+...|++++|++.|+.+.... .+.....+--+..++...+++++|...|..+.+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 33222 233445566666666666544310 011122233344555556666666666666655
No 248
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.47 E-value=0.029 Score=34.05 Aligned_cols=33 Identities=21% Similarity=0.181 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc
Q 006630 561 DTFAKLMRGLKKLYNRQIAAEITEKVRKMAAER 593 (638)
Q Consensus 561 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 593 (638)
..|..+...+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356778888888899999999999999988875
No 249
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.45 E-value=1.6 Score=39.93 Aligned_cols=211 Identities=11% Similarity=0.122 Sum_probs=104.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHH
Q 006630 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVF 212 (638)
Q Consensus 133 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~ 212 (638)
.+..-...|..-..+|-...+|++|-..+.+..+-... +...|. ....++.|.-+.++|.+. +--+..|
T Consensus 26 d~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEn--nrslfh-------AAKayEqaamLake~~kl--sEvvdl~ 94 (308)
T KOG1585|consen 26 DWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN--NRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLY 94 (308)
T ss_pred CchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh--cccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHH
Confidence 33444456777777788888888888877666532211 211121 133456666666666543 1223456
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C--CCCCHHHHHHHHHH
Q 006630 213 GCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA---G--FEPDIVVYNNLLSG 287 (638)
Q Consensus 213 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g--~~p~~~~~~~ll~~ 287 (638)
+.-..+|..+|..+.|-..+++.-+ ...+.++++|+++|.+.... + .+.-...+...-+.
T Consensus 95 eKAs~lY~E~GspdtAAmaleKAak---------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~ 159 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKAAK---------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRV 159 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHH---------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhH
Confidence 6677788888888888777776432 12233444455544443321 0 00011122333344
Q ss_pred HHHcCCHhHHHHHHHHHHHc----CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHH
Q 006630 288 YAQMGKMTDAFELLKEMRRK----GCDPN-ANSYTVLIQALCRMEKMEEANRAFVEMERSG---CEADVVTYTTLISGFC 359 (638)
Q Consensus 288 ~~~~g~~~~a~~~~~~~~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~ 359 (638)
+.+...+++|-..+.+-... .--++ -..|...|-.|.-..++..|.+.++.-.+.+ -.-+..+...|+.+|-
T Consensus 160 lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd 239 (308)
T KOG1585|consen 160 LVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD 239 (308)
T ss_pred hhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc
Confidence 55555555554433322111 00111 1223444445555567777777776633321 1224455556665543
Q ss_pred hcCCHHHHHHH
Q 006630 360 KSRKIDRCYEI 370 (638)
Q Consensus 360 ~~g~~~~A~~~ 370 (638)
.|+.+++-++
T Consensus 240 -~gD~E~~~kv 249 (308)
T KOG1585|consen 240 -EGDIEEIKKV 249 (308)
T ss_pred -cCCHHHHHHH
Confidence 4555555443
No 250
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=2.2 Score=40.42 Aligned_cols=119 Identities=13% Similarity=0.089 Sum_probs=52.8
Q ss_pred hCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 006630 221 KNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300 (638)
Q Consensus 221 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 300 (638)
..|++.+|..+|+......+.+...--.++.+|...|+.+.|..++..+...--.........-|..+.+.....+..++
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l 225 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDL 225 (304)
T ss_pred hccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 44555555555555544444444455555555555555555555555544321111111111222333333333333333
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341 (638)
Q Consensus 301 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (638)
-...-.. +-|...-..+...|...|+.++|.+.+-.+.+
T Consensus 226 ~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 226 QRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3332221 11444444455555555666665555555443
No 251
>PRK11906 transcriptional regulator; Provisional
Probab=95.31 E-value=2.1 Score=43.54 Aligned_cols=111 Identities=9% Similarity=-0.031 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 006630 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDV 512 (638)
Q Consensus 433 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 512 (638)
...+|.+.-+...+.+ +.|......+..++...++++.|...|++....+ +....+|....-.+...|+.++|.+.
T Consensus 319 ~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~---Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 319 AAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS---TDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC---CccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3456666667777766 6677777777776677777888888888877765 23334444444456667888888888
Q ss_pred HHHHHHcCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHH
Q 006630 513 WSCIVTKGCELN---VYAWTIWIHSLFSNGHVKEACSYCLD 550 (638)
Q Consensus 513 ~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~ 550 (638)
+++..+. .|. .......++.|+.++ .++|+++|-+
T Consensus 395 i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 395 IDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 8776665 332 223334445565544 6667766644
No 252
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.21 E-value=1.4 Score=37.55 Aligned_cols=42 Identities=14% Similarity=0.233 Sum_probs=22.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhC
Q 006630 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN 222 (638)
Q Consensus 180 li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 222 (638)
++..+...+.......+++.+...+ ..+...++.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 4455555555555555555555444 24445555555555543
No 253
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.18 E-value=0.36 Score=39.32 Aligned_cols=91 Identities=14% Similarity=-0.030 Sum_probs=56.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHH---HHHHHHHHH
Q 006630 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK-GCELNVYA---WTIWIHSLF 536 (638)
Q Consensus 461 ~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~---~~~li~~~~ 536 (638)
.+++..|+.+.|++.|.+.+..- +.....|+.-..++.-+|+.++|.+=+++.++. |.. .... |..-...|.
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~---P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA---PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc---ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHH
Confidence 35566777777777777777654 345667777777777777777777777777665 222 2222 222233456
Q ss_pred ccCCHHHHHHHHHHHHhCC
Q 006630 537 SNGHVKEACSYCLDMMDAD 555 (638)
Q Consensus 537 ~~g~~~~A~~~~~~m~~~~ 555 (638)
..|+.+.|..-|+..-+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 6677777777776665554
No 254
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.13 E-value=0.97 Score=46.69 Aligned_cols=156 Identities=16% Similarity=0.187 Sum_probs=70.7
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 006630 149 SKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228 (638)
Q Consensus 149 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 228 (638)
.-.++++++......-.-. |. ......+.+++.+-+.|..+.|+++-.. + ..-.+...++|+++.|
T Consensus 272 v~~~d~~~v~~~i~~~~ll-~~-i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLL-PN-IPKDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLDIA 337 (443)
T ss_dssp HHTT-HHH-----HHHHTG-GG---HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHHH
T ss_pred HHcCChhhhhhhhhhhhhc-cc-CChhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHHHH
Confidence 3445566555554311111 11 1234455556656666666666555322 1 1123444556666666
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC
Q 006630 229 AKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308 (638)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 308 (638)
.++.++.. +...|..|.....+.|+++-|.+.|.+... |..|+-.|.-.|+.+.-.++.+.....|
T Consensus 338 ~~~a~~~~-----~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 338 LEIAKELD-----DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHCCCCS-----THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhcC-----cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 55443332 455666666666666666666666655431 3445555555566555555555544443
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006630 309 CDPNANSYTVLIQALCRMEKMEEANRAFVE 338 (638)
Q Consensus 309 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 338 (638)
- ++....++.-.|++++..+++.+
T Consensus 404 ~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 D------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred C------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 23344444445555555555543
No 255
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.03 E-value=1.9 Score=36.62 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=17.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 006630 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFAS 186 (638)
Q Consensus 144 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 186 (638)
++..+...+.+.....+++.+...++ .+....+.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~--~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS--ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc--cchhHHHHHHHHHHH
Confidence 34444444444444444444444332 233344444444443
No 256
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.97 E-value=0.06 Score=51.19 Aligned_cols=105 Identities=17% Similarity=0.108 Sum_probs=70.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCH
Q 006630 498 NSLLRAQKVEMAKDVWSCIVTKGCEL-NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNR 576 (638)
Q Consensus 498 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 576 (638)
+-|.++|++++|++.|...+.. .| |.+++..-..+|.+..++..|..-+..++..+ ..-...|..-+.+-..+|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 3467888888888888777654 44 77777777778888888777777666665431 11122355555555567888
Q ss_pred HHHHHHHHHHHHHHHhcccccchhhhhhh
Q 006630 577 QIAAEITEKVRKMAAERQITFKMYKRRGE 605 (638)
Q Consensus 577 ~~A~~~~~~~~~~~p~~~~~~~~y~~~g~ 605 (638)
.+|.+-++.+++++|++-.+-..|.....
T Consensus 182 ~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 88999999999999987666444444333
No 257
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=2.1 Score=40.64 Aligned_cols=122 Identities=16% Similarity=0.172 Sum_probs=63.8
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHH
Q 006630 147 SLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226 (638)
Q Consensus 147 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 226 (638)
.+...|++.+|..+|.......|. +......+..+|...|+.+.|..++..+...--.........-|..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~--~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE--NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc--cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 344566777777777776666554 344555566677777777777777766654321111111112233333333333
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 227 EAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271 (638)
Q Consensus 227 ~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 271 (638)
+...+-.+... .|.|...-..+...+...|+.++|++.+-.+.+
T Consensus 221 ~~~~l~~~~aa-dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 221 EIQDLQRRLAA-DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33332222222 244556666666666666666666665555544
No 258
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=0.5 Score=46.57 Aligned_cols=62 Identities=15% Similarity=0.114 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006630 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519 (638)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 519 (638)
+++.+..+|.+.+.+.+|+......+..+ +++...+-.-..+|...|+++.|+..|+++++.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~---~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD---PNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC---CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 44455555555555555555555555554 344444444444555555555555555555543
No 259
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.83 E-value=7.6 Score=42.52 Aligned_cols=188 Identities=15% Similarity=0.084 Sum_probs=99.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCC-CC-----CHHHHHHHHHH--HHhcCCHHHHHHHHH--------HHHhCCCCCCCcHHH
Q 006630 429 CKLGELKEAVNVWNEMEAASL-SP-----GTDSFVVMVHG--FLGQGCLIEACEYFK--------EMVGRGLLSAPQYGT 492 (638)
Q Consensus 429 ~~~g~~~~A~~~~~~m~~~~~-~p-----~~~~~~~li~~--~~~~g~~~~A~~~~~--------~m~~~~~~~~p~~~~ 492 (638)
+-.+++..|...++.|....- .| ....+...+.| +...|+.+.|...|. .....+. ..+..+
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~--~~El~i 449 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSK--FRELYI 449 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCc--chHHHH
Confidence 346889899999998875421 11 12233333333 445799999999997 3334442 222222
Q ss_pred HHHHHHHHH---Hc--CCHHH--HHHHHHHHHHc-CCC--CCHHHHHHHH-HHHHcc--CCHHHHHHHHHHHHh-C--CC
Q 006630 493 LKALLNSLL---RA--QKVEM--AKDVWSCIVTK-GCE--LNVYAWTIWI-HSLFSN--GHVKEACSYCLDMMD-A--DV 556 (638)
Q Consensus 493 ~~~ll~~~~---~~--g~~~~--A~~~~~~~~~~-~~~--p~~~~~~~li-~~~~~~--g~~~~A~~~~~~m~~-~--~~ 556 (638)
+ +.++.+. .. ...++ +.++++.+... .-. .+..+|..++ .++... -...++...+.+.++ . ..
T Consensus 450 l-a~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~ 528 (608)
T PF10345_consen 450 L-AALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKL 528 (608)
T ss_pred H-HHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhh
Confidence 2 2222222 22 22223 66777766442 112 2334444443 333322 223355555554433 1 11
Q ss_pred CCCHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc---cccc----------chhhhhhhhhhHHHHHhhhhhh
Q 006630 557 MPQPDT--FAKLMRGLKKLYNRQIAAEITEKVRKMAAER---QITF----------KMYKRRGERDLKEKAKKQVDGR 619 (638)
Q Consensus 557 ~p~~~t--~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~----------~~y~~~g~~~~A~~~~~~~~~~ 619 (638)
..+..+ ...++..-.-.|+..+..+....+.++.... ...+ +.|...|+.++|..++++....
T Consensus 529 ~n~~l~~~~L~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~~ 606 (608)
T PF10345_consen 529 GNSQLLAILLNLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDRV 606 (608)
T ss_pred ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 122221 1223322222588888777777777766555 3221 5688999999999999886543
No 260
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.83 E-value=4.6 Score=44.00 Aligned_cols=177 Identities=10% Similarity=0.129 Sum_probs=108.1
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 006630 151 MRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAK 230 (638)
Q Consensus 151 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 230 (638)
++++++.+.+.+...- +. -.+|..+.+.|..+-|+...+.=. + -......+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~L-----vG----qaiIaYLqKkgypeiAL~FVkD~~---------t---RF~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNL-----VG----QAIIAYLQKKGYPEIALHFVKDER---------T---RFELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCc-----cc----HHHHHHHHhcCCcceeeeeecCcc---------h---heeeehhcCCHHHHHH
Confidence 4567776665543321 11 125666677788877776654321 1 1234457899999988
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC
Q 006630 231 LFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310 (638)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 310 (638)
.-..+. +..+|..|.......|+.+-|+..|++.+. |+.|--.|.-.|+.++-.++.+....+
T Consensus 665 ~akkld-----d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r--- 727 (1202)
T KOG0292|consen 665 AAKKLD-----DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIR--- 727 (1202)
T ss_pred HHHhcC-----cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhh---
Confidence 766654 678899999999999999999999888763 344444566678888777766655443
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377 (638)
Q Consensus 311 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 377 (638)
-|..+ ......| .|++++-.+++..--. .+ ..|-+ -..+|.-++|.++.++....
T Consensus 728 ~D~~~-~~qnalY--l~dv~ervkIl~n~g~----~~-laylt----a~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 728 NDATG-QFQNALY--LGDVKERVKILENGGQ----LP-LAYLT----AAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred hhhHH-HHHHHHH--hccHHHHHHHHHhcCc----cc-HHHHH----HhhcCcHHHHHHHHHhhccc
Confidence 12211 1122223 4777777777665432 12 22221 13367778888888877663
No 261
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.83 E-value=0.86 Score=38.31 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=26.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006630 429 CKLGELKEAVNVWNEMEAASLSP---GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483 (638)
Q Consensus 429 ~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 483 (638)
.+.|++++|.+.|+.+..+- +. ....-..++.+|.+.+++++|+..+++.++..
T Consensus 21 l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 34455555555555555441 11 11233344555555555555555555555544
No 262
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.79 E-value=3.5 Score=38.39 Aligned_cols=60 Identities=15% Similarity=0.156 Sum_probs=36.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006630 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518 (638)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 518 (638)
+..-|.+.|.+..|..-+++|++.-...+-....+-.+..+|...|..++|.+.-.-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 445567777777777777777776322122233455566677777777777666554433
No 263
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=94.73 E-value=5.7 Score=43.35 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=12.0
Q ss_pred hhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 572 KLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 572 ~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
..|+++.|.+..+++- +-|.++..
T Consensus 517 ~~g~~~~AL~~i~~L~-liP~~~~~ 540 (613)
T PF04097_consen 517 HAGQYEQALDIIEKLD-LIPLDPSE 540 (613)
T ss_dssp HTT-HHHHHHHHHHTT--S-S-HHH
T ss_pred HcCCHHHHHHHHHhCC-CCCCCHHH
Confidence 4577777777766543 44544433
No 264
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.72 E-value=7.8 Score=42.15 Aligned_cols=177 Identities=13% Similarity=0.147 Sum_probs=99.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHH
Q 006630 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMR----RFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL 216 (638)
Q Consensus 141 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~----~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li 216 (638)
...-++++.+...++.|+.+...-. .+..+...+.. .+.+.|++++|.+.|-+-... ++|. .+|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~------~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi 404 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQH------LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVI 404 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHH
Confidence 3455677777777877777755321 23333333333 344678888887776554422 1232 234
Q ss_pred HHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhH
Q 006630 217 DALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296 (638)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 296 (638)
.-|.....+..-..+++.+.+..-.+...-+.|+.+|.+.++.+.-.++.+.-. .|.. ..-....+..|.+.+-.++
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 444455555555666666665545566667778888888888777666555433 2211 1113445566666666666
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340 (638)
Q Consensus 297 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 340 (638)
|.-+-..... .......++ -..+++++|++++..+.
T Consensus 482 a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 6655444322 333333333 34477788887777654
No 265
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.72 E-value=1.1 Score=42.95 Aligned_cols=118 Identities=9% Similarity=-0.061 Sum_probs=69.2
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhC---CCCCCHHHHHHHHHHHHhCCCH
Q 006630 149 SKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKY---GCEPDEFVFGCLLDALCKNSSV 225 (638)
Q Consensus 149 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~ 225 (638)
.-.|++.+|...++++.+..|. +.-.+...=.+|...|+...-...++++... +++...++...+.-++..+|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~Pt--Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPT--DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhCch--hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3456666666666777666543 4445555556666677776666666666532 2222222223333334456777
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006630 226 KEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQ 268 (638)
Q Consensus 226 ~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 268 (638)
++|++.-++..+-.+.|..+-.++...+--.|++.++.++..+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 7777776666665555666666666666667777777666554
No 266
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.65 E-value=7.8 Score=41.77 Aligned_cols=81 Identities=11% Similarity=0.036 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhh---cCHH
Q 006630 505 KVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN----GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL---YNRQ 577 (638)
Q Consensus 505 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~---g~~~ 577 (638)
+.+.+...+......| +......+.+.|..- .+++.|...+......+ ....-.+...+-.- ..+.
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~~~ 526 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKVLH 526 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcchhH
Confidence 3444555555554433 444455555554433 24666666666655443 22222222222110 1256
Q ss_pred HHHHHHHHHHHHHHh
Q 006630 578 IAAEITEKVRKMAAE 592 (638)
Q Consensus 578 ~A~~~~~~~~~~~p~ 592 (638)
.|.+++.++.+.+..
T Consensus 527 ~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 527 LAKRYYDQASEEDSR 541 (552)
T ss_pred HHHHHHHHHHhcCch
Confidence 677777766665544
No 267
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.64 E-value=0.97 Score=46.68 Aligned_cols=46 Identities=13% Similarity=0.100 Sum_probs=20.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006630 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373 (638)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 373 (638)
...++|+++.|.++.++. .+...|..|.......|+++-|.+.|.+
T Consensus 327 LAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 327 LALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 334445555544443322 1344455555555555555544444443
No 268
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.62 E-value=0.007 Score=36.90 Aligned_cols=28 Identities=11% Similarity=0.283 Sum_probs=17.3
Q ss_pred HHHHHHHHHhccccc----chhhhhhhhhhHH
Q 006630 583 TEKVRKMAAERQITF----KMYKRRGERDLKE 610 (638)
Q Consensus 583 ~~~~~~~~p~~~~~~----~~y~~~g~~~~A~ 610 (638)
++++++++|+++.++ .+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 456666666666664 4566666666664
No 269
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.61 E-value=0.1 Score=32.21 Aligned_cols=31 Identities=19% Similarity=0.162 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 562 TFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 562 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
+|..|...|.+.|++++|++++++++.+..+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 3667788888888888888888886655543
No 270
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.48 E-value=6 Score=39.80 Aligned_cols=67 Identities=9% Similarity=-0.030 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006630 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP-QYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518 (638)
Q Consensus 452 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 518 (638)
...+|..++..+.+.|+++.|...+..+...+....+ .......-+..+...|+..+|...++..+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3457888888888899999998888888775421111 334444556667788888888888888876
No 271
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.48 E-value=0.87 Score=40.20 Aligned_cols=118 Identities=14% Similarity=0.005 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhCCCCCCCcHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHH
Q 006630 471 EACEYFKEMVGRGLLSAPQYGTLKA--LLNSLLRAQKVEMAKDVWSCIVTKGCELN--VYAWTIWIHSLFSNGHVKEACS 546 (638)
Q Consensus 471 ~A~~~~~~m~~~~~~~~p~~~~~~~--ll~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~ 546 (638)
+.....+.+..... ...+.++.. +...+..+|++++|...++..+.....-+ ...--.|.......|.+++|+.
T Consensus 70 ~~~~~~ekf~~~n~--~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~ 147 (207)
T COG2976 70 KSIAAAEKFVQANG--KTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALK 147 (207)
T ss_pred hhHHHHHHHHhhcc--ccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 44444555555431 233333333 34557788888888888887775411111 1122234567778899999988
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 547 YCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 547 ~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
.++.....+. .+.....-.+++...|+.++|+..|+++++.+++
T Consensus 148 ~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 148 TLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 8876553321 2333445567788889999999999999888643
No 272
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.46 E-value=4 Score=37.58 Aligned_cols=86 Identities=17% Similarity=0.072 Sum_probs=41.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCC
Q 006630 463 FLGQGCLIEACEYFKEMVGRGLLSAP-QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN-VYAWTIWIHSLFSNGH 540 (638)
Q Consensus 463 ~~~~g~~~~A~~~~~~m~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~ 540 (638)
+...++.++++..+........ . ....+..+...+...++++.|...+...... .|+ ...+..+...+...|.
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 251 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNP---DDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGR 251 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCc---ccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCC
Confidence 4444555555555555544431 2 2334444444555555555555555555543 222 2333333333334455
Q ss_pred HHHHHHHHHHHHh
Q 006630 541 VKEACSYCLDMMD 553 (638)
Q Consensus 541 ~~~A~~~~~~m~~ 553 (638)
.+++...+.+...
T Consensus 252 ~~~~~~~~~~~~~ 264 (291)
T COG0457 252 YEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555554
No 273
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.45 E-value=0.1 Score=31.56 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc
Q 006630 562 TFAKLMRGLKKLYNRQIAAEITEKVRKMAAER 593 (638)
Q Consensus 562 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 593 (638)
+|..+...+...|++++|...++++++++|++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 57778888889999999999999999999853
No 274
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.37 E-value=0.89 Score=40.16 Aligned_cols=89 Identities=17% Similarity=0.174 Sum_probs=55.0
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhh
Q 006630 534 SLFSNGHVKEACSYCLDMMDADVMPQ-----PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRG 604 (638)
Q Consensus 534 ~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g 604 (638)
-+..+|++++|..-|..+++.- .|. ++.|..-..+..+++.++.|+.-..++++++|.+..++ ..|.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3556677777777776666531 111 23344555566667777777777777777777655554 4666777
Q ss_pred hhhhHHHHHhhhhhhhhhh
Q 006630 605 ERDLKEKAKKQVDGRKRRA 623 (638)
Q Consensus 605 ~~~~A~~~~~~~~~~~~~~ 623 (638)
++++|.+-|+++.+..++.
T Consensus 183 k~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSR 201 (271)
T ss_pred hHHHHHHHHHHHHHhCcch
Confidence 7777777777766555443
No 275
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.32 E-value=8.6 Score=40.88 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHH
Q 006630 277 DIVVYNNLLSGYAQMGKMTDAFELL 301 (638)
Q Consensus 277 ~~~~~~~ll~~~~~~g~~~~a~~~~ 301 (638)
|....-.+..++.+.|.-++|.+.|
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHH
Confidence 3444455555556666655555544
No 276
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.31 E-value=0.14 Score=33.38 Aligned_cols=39 Identities=15% Similarity=0.102 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHH
Q 006630 211 VFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSL 249 (638)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 249 (638)
++..+...|...|++++|+++|+++.+..|.|...|..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 344555555555666666666665555555555555444
No 277
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.24 E-value=0.41 Score=44.57 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006630 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398 (638)
Q Consensus 365 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 398 (638)
+-+++++++|...|+.||..+-..+++++.+.+-
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 3466777777777777777777777777766554
No 278
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.10 E-value=5 Score=37.35 Aligned_cols=48 Identities=8% Similarity=0.137 Sum_probs=25.9
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHh---HHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 293 KMTDAFELLKEMRRKGCDPNANS---YTVLIQALCRMEKMEEANRAFVEME 340 (638)
Q Consensus 293 ~~~~a~~~~~~~~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~ 340 (638)
.+++|+.-|++..+....-...- ...+|..+.+.|++++....+.++.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 56666666666655422222222 2334555666666666666666654
No 279
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.09 E-value=4.7 Score=37.05 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=25.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH---HHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006630 421 YNVVIRLACKLGELKEAVNVWNEM---EAASLSPGTDSFVVMVHGFLGQGCLIEAC 473 (638)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 473 (638)
|-..|-.|.-..++..|.+.++.- ....-+.+..+...|+.+|- .|+.+++.
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~ 247 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIK 247 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHH
Confidence 333444455556666666666652 22222334455556665553 34444443
No 280
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.07 E-value=0.48 Score=44.11 Aligned_cols=127 Identities=19% Similarity=0.192 Sum_probs=80.8
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 006630 229 AKLFDEMRERFKPSLRHFTSLLYGWCKE-----GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303 (638)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 303 (638)
...|....- ..-|-.+|...+..+... +.++-....++.|.+.|+.-|..+|+.|++.+-+-.
T Consensus 54 e~~F~aa~~-~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------- 121 (406)
T KOG3941|consen 54 EKQFEAAEP-EKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------- 121 (406)
T ss_pred hhhhhccCc-ccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc-----------
Confidence 444555541 123777788777777543 556777777888888888888888888877653321
Q ss_pred HHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHH
Q 006630 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID-RCYEILDSMI 375 (638)
Q Consensus 304 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~ 375 (638)
+.|... +..+.-.|- .+-+-+++++++|...|+.||-.+-..|++++.+.+..- +...++-.|.
T Consensus 122 -----fiP~nv-fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 122 -----FIPQNV-FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred -----cccHHH-HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 222211 111111222 223457889999999999999999999999998877643 3333333443
No 281
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.88 E-value=0.61 Score=44.31 Aligned_cols=78 Identities=14% Similarity=0.095 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 006630 210 FVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD-----AGFEPDIVVYNNL 284 (638)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~l 284 (638)
.++..++..+..+|+++.+.+.++++....|-+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45677888888899999999999998888888999999999999999999999999888765 5777777766655
Q ss_pred HHH
Q 006630 285 LSG 287 (638)
Q Consensus 285 l~~ 287 (638)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 544
No 282
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.79 E-value=4 Score=35.38 Aligned_cols=53 Identities=15% Similarity=0.053 Sum_probs=22.9
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 006630 535 LFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRK 588 (638)
Q Consensus 535 ~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 588 (638)
+..+|.+++.....+-+...+ .|- ...-..|.-+-.+.|++..|+..+..+..
T Consensus 142 LvD~gsy~dV~srvepLa~d~-n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDG-NPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhccccHHHHHHHhhhccCCC-ChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 344555555444443332222 111 12223344444455555555555554443
No 283
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.75 E-value=9.2 Score=39.19 Aligned_cols=172 Identities=6% Similarity=-0.025 Sum_probs=87.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHH
Q 006630 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495 (638)
Q Consensus 416 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ 495 (638)
.|....-+++..+.......-.+.+..+|...| .+-..|..++..|..+ ..++-..+++++.+..+ +......
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df----nDvv~~R 136 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF----NDVVIGR 136 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc----hhHHHHH
Confidence 344444555555555555555555555665543 3444555566666555 34455555665555542 2222223
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCC--C---HHHHHHHHHHHHccCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHH
Q 006630 496 LLNSLLRAQKVEMAKDVWSCIVTKGCEL--N---VYAWTIWIHSLFSNGHVKEACSYCLDMMD-ADVMPQPDTFAKLMRG 569 (638)
Q Consensus 496 ll~~~~~~g~~~~A~~~~~~~~~~~~~p--~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~t~~~ll~~ 569 (638)
-+..+...++.+.+..+|.++...-++. + ...|.-+...- -.+.+..+.+..+..+ .|..--.+.+.-+..-
T Consensus 137 eLa~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 137 ELADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 3333333355555666665555431110 1 12343333211 2344555555555543 3434445555666666
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 570 LKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 570 ~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
|....|+.+|.++...+++.+..+..+
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k~~~a 241 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEKDVWA 241 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcchhhhH
Confidence 666777777777777777776665444
No 284
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.56 E-value=8.2 Score=42.15 Aligned_cols=66 Identities=15% Similarity=0.190 Sum_probs=36.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHhchhCCCCCCHH
Q 006630 143 ALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM-------VKKAIEVLDEMPKYGCEPDEF 210 (638)
Q Consensus 143 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~-------~~~A~~~~~~m~~~g~~~~~~ 210 (638)
++|--+.|+|.+++|.++..+....... ....|...+..|....+ -++...-|+...+.....|++
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~--~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQK--IERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-T--TTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcc--hhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 4566677999999998888555544322 33456667777765422 234555566555443322553
No 285
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.50 E-value=3.7 Score=33.82 Aligned_cols=61 Identities=13% Similarity=0.095 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 006630 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520 (638)
Q Consensus 457 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 520 (638)
..-+..+..+|+-++--+++.++...+ .+++..+..+.++|.+.|+..++.+++.++-+.|
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~---~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNE---EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH--------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcc---CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 333445555555555555555555433 3555555555566666666666666655555544
No 286
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.02 E-value=4.4 Score=33.37 Aligned_cols=63 Identities=25% Similarity=0.289 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC
Q 006630 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309 (638)
Q Consensus 246 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 309 (638)
....+....+.|+-+.-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3444445555555555555555554322 44555555555555555555555555555555543
No 287
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.96 E-value=20 Score=40.83 Aligned_cols=133 Identities=15% Similarity=0.149 Sum_probs=77.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q 006630 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDS----FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500 (638)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~ 500 (638)
++.--+.|.+++|+.++ .|+... |.+....+.....+++|.-.|+.. | . ....+.+|
T Consensus 915 ~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~---G----k----lekAl~a~ 975 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERC---G----K----LEKALKAY 975 (1265)
T ss_pred HHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHh---c----c----HHHHHHHH
Confidence 33344555555555554 344443 444445555667777777666543 1 1 12356777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHH
Q 006630 501 LRAQKVEMAKDVWSCIVTKGCELNVY--AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQI 578 (638)
Q Consensus 501 ~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 578 (638)
..+|++.+|..+..++.. ..+.. +-..|+.-+...+++-+|-++..+.... |. ..+..+++...+++
T Consensus 976 ~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~~-----~av~ll~ka~~~~e 1044 (1265)
T KOG1920|consen 976 KECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---PE-----EAVALLCKAKEWEE 1044 (1265)
T ss_pred HHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---HH-----HHHHHHhhHhHHHH
Confidence 888888888888776642 11222 2256777788888888888887776532 21 12233445556777
Q ss_pred HHHHHHHHH
Q 006630 579 AAEITEKVR 587 (638)
Q Consensus 579 A~~~~~~~~ 587 (638)
|.....+.-
T Consensus 1045 Alrva~~~~ 1053 (1265)
T KOG1920|consen 1045 ALRVASKAK 1053 (1265)
T ss_pred HHHHHHhcc
Confidence 776665554
No 288
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.81 E-value=5.6 Score=34.24 Aligned_cols=51 Identities=14% Similarity=0.026 Sum_probs=23.7
Q ss_pred hCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 221 KNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271 (638)
Q Consensus 221 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 271 (638)
+.++.+++..+++.+.---|.....-..-...+.+.|++.+|..+|+++.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344555555555555432222222222233334455555555555555544
No 289
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.24 E-value=0.33 Score=46.41 Aligned_cols=86 Identities=16% Similarity=0.084 Sum_probs=68.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhh
Q 006630 532 IHSLFSNGHVKEACSYCLDMMDADVMP-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGER 606 (638)
Q Consensus 532 i~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~ 606 (638)
..-|.++|+++||+..|.+.+. +.| |++++..-..+|.+...+..|+.-.+.++.++-....+| ..-...|+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 3468999999999999988764 467 899999999999999999999999999999887655554 244566888
Q ss_pred hhHHHHHhhhhhh
Q 006630 607 DLKEKAKKQVDGR 619 (638)
Q Consensus 607 ~~A~~~~~~~~~~ 619 (638)
.||.+-++.+-+.
T Consensus 182 ~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 182 MEAKKDCETVLAL 194 (536)
T ss_pred HHHHHhHHHHHhh
Confidence 8888777664433
No 290
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.16 E-value=0.66 Score=43.93 Aligned_cols=103 Identities=22% Similarity=0.256 Sum_probs=76.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCC
Q 006630 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKP----QLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEP 207 (638)
Q Consensus 132 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~----~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~ 207 (638)
.|.+++..+-..++.+-....+++++...+-.++.... ..++..+|..++. .-++++++.++..=+..|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhcccc
Confidence 35566666667777777777888888888877764321 1134334333332 346779999999988999999
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhcc
Q 006630 208 DEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238 (638)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 238 (638)
|.++++.+|+.+.+.+++.+|..+.-.|..+
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999888776543
No 291
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.10 E-value=16 Score=37.59 Aligned_cols=57 Identities=11% Similarity=0.149 Sum_probs=25.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006630 389 IMLAHEKKEELEECVELMGEMRKIGCV-PDVSNYNVVIRLACKLGELKEAVNVWNEME 445 (638)
Q Consensus 389 ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (638)
+..++-+.|+.++|.+.+.++.+.... .+..+...|+.++...+.+.++..++.+-.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 333444445555555555554432111 122344445555555555555555555443
No 292
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.08 E-value=0.47 Score=32.26 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=26.1
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 565 KLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 565 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
.+.-++.+.|+++.|++..+.+++.+|+|..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 45567889999999999999999999987664
No 293
>PRK09687 putative lyase; Provisional
Probab=91.77 E-value=13 Score=35.93 Aligned_cols=138 Identities=12% Similarity=0.023 Sum_probs=75.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCCcHHHHH
Q 006630 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG-CLIEACEYFKEMVGRGLLSAPQYGTLK 494 (638)
Q Consensus 416 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~p~~~~~~ 494 (638)
++..+-...+.++.+.++ ++|...+-.+.+. +|...-...+.++.+.+ ...++...+..+.. .++..+-.
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~-----D~~~~VR~ 210 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ-----DKNEEIRI 210 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc-----CCChHHHH
Confidence 355555555666666665 4455555555542 33334444444454432 23455555555553 24555556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006630 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK 571 (638)
Q Consensus 495 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 571 (638)
..+.++.+.|+ ..|...+-...+.+ + .....+.++...|.. +|+..+..+.+. .||..+-...+.+|.
T Consensus 211 ~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 211 EAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 66677777776 34555555555432 2 233566777777774 577777777653 456655555555443
No 294
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.65 E-value=29 Score=39.67 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=24.2
Q ss_pred HHHhccCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 006630 233 DEMRERFKPSLRHFTSLLYGWCKEG--KLVEAKYVLVQMKD 271 (638)
Q Consensus 233 ~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~ 271 (638)
.....+..|+ .....+|..|++.+ .+++|+....+...
T Consensus 781 r~~l~~~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 781 RNALERRAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred HHHHhhcCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 3333345555 44556777888877 67777777777664
No 295
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.63 E-value=23 Score=38.33 Aligned_cols=104 Identities=14% Similarity=0.133 Sum_probs=53.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhh
Q 006630 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573 (638)
Q Consensus 494 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 573 (638)
+-.+.-+...|+..+|.++-.+.. -||-..|..-+.++...+++++-.++-+.+. .++-|.-...+|.+.
T Consensus 688 ~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~ 757 (829)
T KOG2280|consen 688 HDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQ 757 (829)
T ss_pred HHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhc
Confidence 333444555566666655544432 3455555555566666666665444433221 133444555666666
Q ss_pred cCHHHHHHHHHHHHHHHHhcccccchhhhhhhhhhHHH
Q 006630 574 YNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEK 611 (638)
Q Consensus 574 g~~~~A~~~~~~~~~~~p~~~~~~~~y~~~g~~~~A~~ 611 (638)
|+.++|.++.-++-.+. +...+|.+.|++.+|.+
T Consensus 758 ~n~~EA~KYiprv~~l~----ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 758 GNKDEAKKYIPRVGGLQ----EKVKAYLRVGDVKEAAD 791 (829)
T ss_pred ccHHHHhhhhhccCChH----HHHHHHHHhccHHHHHH
Confidence 66666666555443322 34455666666666554
No 296
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.53 E-value=2.3 Score=40.50 Aligned_cols=56 Identities=9% Similarity=0.108 Sum_probs=22.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006630 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI 516 (638)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 516 (638)
.++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++
T Consensus 158 ~lae~~~~~~~~~~~~~~l~~Li~~d---p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 158 KLAEALIACGRADAVIEHLERLIELD---PYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcC---ccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 33334444444444444444444433 233334444444444444444444444433
No 297
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=91.52 E-value=3.7 Score=33.93 Aligned_cols=93 Identities=10% Similarity=0.109 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 522 ELNVYAWTIWIHSLFSNGH---VKEACSYCLDMMDADVMPQ--PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 522 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
.+...+--.+.+++.+..+ .++.+.++++..+. -.|+ -.-..-|.-++.+.++|+.++++.+.+++.+|+|
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n--- 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN--- 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc---
Confidence 4455565567778877654 56778888888762 2343 2233345557889999999999999999999874
Q ss_pred cchhhhhhhhhhHHHHHhhhhhhhhhhhhhhc
Q 006630 597 FKMYKRRGERDLKEKAKKQVDGRKRRARQRRW 628 (638)
Q Consensus 597 ~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 628 (638)
.+|.++.+.++++..|..-.+.
T Consensus 105 ----------~Qa~~Lk~~ied~itkegliGm 126 (149)
T KOG3364|consen 105 ----------RQALELKETIEDKITKEGLIGM 126 (149)
T ss_pred ----------HHHHHHHHHHHHHHhhcceeee
Confidence 5577777778777777665553
No 298
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.49 E-value=24 Score=38.35 Aligned_cols=102 Identities=14% Similarity=0.143 Sum_probs=60.6
Q ss_pred HHHHHhcCCHHHHHHHHHhchhCCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC
Q 006630 181 MRRFASARMVKKAIEVLDEMPKYGCEP---DEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG 257 (638)
Q Consensus 181 i~~~~~~~~~~~A~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g 257 (638)
++-+.+.+.+++|+.+-+..... .+ -..++...|+.+.-.|++++|-...-.|... +..-|.--+..+...+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn---~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN---NAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc---hHHHHHHHHHHhcccc
Confidence 33445567777777776654332 33 2345667777777778888887777777644 6666777676666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006630 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290 (638)
Q Consensus 258 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 290 (638)
+......+ +.......+...|..++-.+..
T Consensus 438 ~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 438 QLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 65443322 2221112355667766666655
No 299
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.24 E-value=15 Score=35.72 Aligned_cols=127 Identities=11% Similarity=0.198 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCC---
Q 006630 331 EANRAFVEMERSGCEADVVTYTTLISGFCK--S----RKIDRCYEILDSMIQRGI---LPNQLTYLHIMLAHEKKEE--- 398 (638)
Q Consensus 331 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~--~----g~~~~A~~~~~~m~~~~~---~p~~~t~~~ll~~~~~~g~--- 398 (638)
+...+++.|.+.|+..+..+|-+....... . ....+|..+++.|.+..+ .++...+..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344555666666666555554442221111 1 123456666666666532 2233444444332 1222
Q ss_pred -HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006630 399 -LEECVELMGEMRKIGCVPDVS--NYNVVIRLACKLGE--LKEAVNVWNEMEAASLSPGTDSFVVM 459 (638)
Q Consensus 399 -~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~l 459 (638)
.+....+|+.+.+.|+..+.. ....++........ ..++..+++.+.+.|+++....|..+
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 233444555555544443321 22222221111111 23455555666666555555444433
No 300
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.23 E-value=15 Score=35.56 Aligned_cols=165 Identities=12% Similarity=0.054 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHH
Q 006630 419 SNYNVVIRLACKLGELK---EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495 (638)
Q Consensus 419 ~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ 495 (638)
.++..++.+|...+..+ +|..+++.+.... +-....+..-+..+.+.++.+++.+.+.+|+..-.. ....+..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~---~e~~~~~ 160 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH---SESNFDS 160 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc---ccchHHH
Confidence 34555666666666544 3444555553331 112334444455555567777777777777765321 2223333
Q ss_pred HHHHH---HHcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHH---HHccCC------HHHHHHHHHHHHh-CCCCCCH
Q 006630 496 LLNSL---LRAQKVEMAKDVWSCIVTKGCELNVYAW--TIWIHS---LFSNGH------VKEACSYCLDMMD-ADVMPQP 560 (638)
Q Consensus 496 ll~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~~~--~~li~~---~~~~g~------~~~A~~~~~~m~~-~~~~p~~ 560 (638)
++..+ .. .....|...++.++...+.|....| ..++.. ..+.++ .+....++....+ .+.+.+.
T Consensus 161 ~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 161 ILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 33333 32 2234455555555444333333211 111111 111111 3333344443222 1112222
Q ss_pred HH---HHHH----HHHHHhhcCHHHHHHHHHHHHH
Q 006630 561 DT---FAKL----MRGLKKLYNRQIAAEITEKVRK 588 (638)
Q Consensus 561 ~t---~~~l----l~~~~~~g~~~~A~~~~~~~~~ 588 (638)
.+ ..++ +..+.+.++|+.|.+.++.++.
T Consensus 240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 22 2222 2345567899999999887653
No 301
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.00 E-value=12 Score=33.92 Aligned_cols=166 Identities=10% Similarity=-0.017 Sum_probs=98.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHH
Q 006630 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495 (638)
Q Consensus 416 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ 495 (638)
.-+.+||.|.-.+...|+++.|.+.|+...+.+..-+-...|.-| ++---|+++-|.+-|.+.-+.+.. .|-...|.-
T Consensus 97 ~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~-DPfR~LWLY 174 (297)
T COG4785 97 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPN-DPFRSLWLY 174 (297)
T ss_pred CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCC-ChHHHHHHH
Confidence 345778888888889999999999999998876222222222222 233468899998888888777632 343333333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHH
Q 006630 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-------PDTFAKLMR 568 (638)
Q Consensus 496 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-------~~t~~~ll~ 568 (638)
+. -..-++.+|..-+.+--+ ..|..-|...|-.|.--.-.+++ +++++... -..+ ..||--+.+
T Consensus 175 l~---E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yLgkiS~e~--l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K 245 (297)
T COG4785 175 LN---EQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYLGKISEET--LMERLKAD-ATDNTSLAEHLTETYFYLGK 245 (297)
T ss_pred HH---HhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHHhhccHHH--HHHHHHhh-ccchHHHHHHHHHHHHHHHH
Confidence 32 233455666554433222 23555665544433322222222 33344321 1211 356777888
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 569 GLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 569 ~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
-+...|+.++|..+++-++..+--
T Consensus 246 ~~l~~G~~~~A~~LfKLaiannVy 269 (297)
T COG4785 246 YYLSLGDLDEATALFKLAVANNVY 269 (297)
T ss_pred HHhccccHHHHHHHHHHHHHHhHH
Confidence 888889999999999888776543
No 302
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.44 E-value=11 Score=32.75 Aligned_cols=137 Identities=18% Similarity=0.115 Sum_probs=81.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHH-HHHH
Q 006630 136 HSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEF-VFGC 214 (638)
Q Consensus 136 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~-~~~~ 214 (638)
.+...|..-++ +++.+..++|+.-|..+.+.+-.....-....+.......|+-..|+..|+++-...-.|-.. -..-
T Consensus 57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 34455555444 456677888999998888765332222222333444567788888888888876553333322 1111
Q ss_pred H--HHHHHhCCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006630 215 L--LDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAG 273 (638)
Q Consensus 215 l--i~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 273 (638)
| .-.+...|.+++.....+.+.. +.+--...-..|.-+-.+.|++..|.+.|..+....
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 2 2234567777777776666542 223334445566667777888888888888776543
No 303
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.32 E-value=0.61 Score=28.69 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=20.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH
Q 006630 527 AWTIWIHSLFSNGHVKEACSYCLDMM 552 (638)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m~ 552 (638)
+|..|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888899999998888854
No 304
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.25 E-value=0.34 Score=29.40 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=18.1
Q ss_pred HHHhccCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006630 233 DEMRERFKPSLRHFTSLLYGWCKEGKLVEAK 263 (638)
Q Consensus 233 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 263 (638)
++..+..|.|..+|+.+...|...|++++|+
T Consensus 3 ~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3334444556666666666666666666654
No 305
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.09 E-value=4.6 Score=35.92 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 006630 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDI--VVYNNLLSGYAQMGKMTDAFELLKEMRR 306 (638)
Q Consensus 244 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 306 (638)
..+..+...|++.|+.++|++.|.++.+....+.. ..+-.+|+.....+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34566667777777777777777776665433322 3445566666667777776666655543
No 306
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.64 E-value=12 Score=31.80 Aligned_cols=51 Identities=14% Similarity=0.032 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 222 NSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272 (638)
Q Consensus 222 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (638)
.++.+++..+++.|.---|.....-..-...+...|++++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 456666666666554432222222222233345566666666666666554
No 307
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.42 E-value=0.62 Score=27.66 Aligned_cols=29 Identities=24% Similarity=0.170 Sum_probs=20.6
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 564 AKLMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 564 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
..+..++.+.|++++|.+.++++++..|+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34556666777777777777777777775
No 308
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.40 E-value=14 Score=32.30 Aligned_cols=133 Identities=13% Similarity=0.161 Sum_probs=61.1
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006630 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519 (638)
Q Consensus 440 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 519 (638)
.++.+.+.+++|+...|..++..+.+.|++..- .+++..++. +|.......+ +...+.+..+.++--.|.++
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi--~DSk~lA~~L--Ls~~~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVI--PDSKPLACQL--LSLGNQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhccc--CCcHHHHHHH--HHhHccChHHHHHHHHHHHH
Confidence 334444555666666666666666666654433 233444432 3333332222 11222223333333333322
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 006630 520 GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588 (638)
Q Consensus 520 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 588 (638)
=...+..+++.+...|++-+|+++.+.... -+...-..++.+..+.+|...=-.+++-..+
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 011344556667777777777777655321 1112223455555555555544444443333
No 309
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.35 E-value=27 Score=35.57 Aligned_cols=118 Identities=7% Similarity=0.014 Sum_probs=57.9
Q ss_pred CCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHH
Q 006630 222 NSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301 (638)
Q Consensus 222 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 301 (638)
.|++-.|-+-+.....+.+.+++........+...|+++.+...+...... +.....+...+++...+.|+++.|..+-
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence 455554443333333333333333333334455566666666665544322 1223345556666666666666666666
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341 (638)
Q Consensus 302 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (638)
+-|....++ +..+........-..|-++++...+.++..
T Consensus 381 ~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 381 EMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 666655444 222222222222334555666666665543
No 310
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.30 E-value=2 Score=37.59 Aligned_cols=59 Identities=15% Similarity=0.065 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCC-----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006630 508 MAKDVWSCIVTKGCELN-VYAWTIWIHSLFSNGH-----------VKEACSYCLDMMDADVMPQPDTFAKLMRGL 570 (638)
Q Consensus 508 ~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~-----------~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 570 (638)
+|+.-|++++.. .|+ ..++.++..+|...+. +++|...|++..+. +|+..+|..-+..+
T Consensus 53 dAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 53 DAISKFEEALKI--NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 333334444432 444 3455566655544322 34444455554433 56666666555544
No 311
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.26 E-value=36 Score=36.80 Aligned_cols=208 Identities=14% Similarity=0.098 Sum_probs=100.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHH
Q 006630 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACK-LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL--GQGCLIEACE 474 (638)
Q Consensus 398 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~--~~g~~~~A~~ 474 (638)
+.+.|..++....+.| .|+....-..+..... ..+...|.+.|......| .+...-+.+++-... ..-+...|..
T Consensus 308 d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-~~~A~~~la~~y~~G~gv~r~~~~A~~ 385 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-HILAIYRLALCYELGLGVERNLELAFA 385 (552)
T ss_pred cHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCcCCCHHHHHH
Confidence 4555666666666655 3443333222222111 234567777777777666 222222222221111 2345677777
Q ss_pred HHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HH---HHc----cCCHHHHHH
Q 006630 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI-HS---LFS----NGHVKEACS 546 (638)
Q Consensus 475 ~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li-~~---~~~----~g~~~~A~~ 546 (638)
++++..+.|. |...-....+..+.. +.++.+.-.+..+...|.+ ...+-..++ .. ... ..+...+..
T Consensus 386 ~~k~aA~~g~---~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
T KOG1550|consen 386 YYKKAAEKGN---PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVISTLERAFS 460 (552)
T ss_pred HHHHHHHccC---hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccchhHHHH
Confidence 7777777762 332222233333334 5666665555555554322 111111111 10 111 224556666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhh----cCHHHHHHHHHHHHHHHHhcccccc---hh----hhhhhhhhHHHHHhh
Q 006630 547 YCLDMMDADVMPQPDTFAKLMRGLKKL----YNRQIAAEITEKVRKMAAERQITFK---MY----KRRGERDLKEKAKKQ 615 (638)
Q Consensus 547 ~~~~m~~~~~~p~~~t~~~ll~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~---~y----~~~g~~~~A~~~~~~ 615 (638)
++.+....| +......+.+.|..- .+++.|...+.++-... ....++ ++ .-.. +..|.+.+++
T Consensus 461 ~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~--~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~ 534 (552)
T KOG1550|consen 461 LYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG--AQALFNLGYMHEHGEGIKV-LHLAKRYYDQ 534 (552)
T ss_pred HHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh--hHHHhhhhhHHhcCcCcch-hHHHHHHHHH
Confidence 666655443 344445555554432 36788888888777766 222222 22 2223 6777777776
Q ss_pred hhh
Q 006630 616 VDG 618 (638)
Q Consensus 616 ~~~ 618 (638)
..+
T Consensus 535 ~~~ 537 (552)
T KOG1550|consen 535 ASE 537 (552)
T ss_pred HHh
Confidence 544
No 312
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.84 E-value=19 Score=33.10 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=12.2
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 006630 358 FCKSRKIDRCYEILDSMI 375 (638)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~ 375 (638)
+.-.+++++|.++|.+.-
T Consensus 24 fgg~~k~eeAadl~~~Aa 41 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAA 41 (288)
T ss_pred cCCCcchHHHHHHHHHHH
Confidence 444567888888877643
No 313
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.74 E-value=25 Score=34.32 Aligned_cols=24 Identities=8% Similarity=0.023 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHH
Q 006630 543 EACSYCLDMMDADVMPQPDTFAKL 566 (638)
Q Consensus 543 ~A~~~~~~m~~~~~~p~~~t~~~l 566 (638)
.+.++++.+.+.|+++....|..+
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHcCCccccccccHH
Confidence 444455555555555444444433
No 314
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.09 E-value=11 Score=39.35 Aligned_cols=130 Identities=19% Similarity=0.190 Sum_probs=72.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC
Q 006630 178 VILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG 257 (638)
Q Consensus 178 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g 257 (638)
+.++..+-+.|..++|+++-. .||.. .....+.|+++.|.++..+.. +..-|..|.++....|
T Consensus 618 t~va~Fle~~g~~e~AL~~s~-------D~d~r-----Felal~lgrl~iA~~la~e~~-----s~~Kw~~Lg~~al~~~ 680 (794)
T KOG0276|consen 618 TKVAHFLESQGMKEQALELST-------DPDQR-----FELALKLGRLDIAFDLAVEAN-----SEVKWRQLGDAALSAG 680 (794)
T ss_pred hhHHhHhhhccchHhhhhcCC-------Chhhh-----hhhhhhcCcHHHHHHHHHhhc-----chHHHHHHHHHHhhcc
Confidence 345555556666666654421 12211 223345677777766655543 4556777777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 006630 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337 (638)
Q Consensus 258 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 337 (638)
++..|.+.|..... |..|+-.+...|+-+....+-....+.|.. |.-.-+|...|+++++.+++.
T Consensus 681 ~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 681 ELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred cchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHH
Confidence 77777777766543 345555566666665555555555544432 222334556677777666665
Q ss_pred HH
Q 006630 338 EM 339 (638)
Q Consensus 338 ~m 339 (638)
.-
T Consensus 746 ~t 747 (794)
T KOG0276|consen 746 ST 747 (794)
T ss_pred hc
Confidence 43
No 315
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.03 E-value=4.8 Score=35.80 Aligned_cols=63 Identities=6% Similarity=-0.048 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006630 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517 (638)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 517 (638)
.+..+...|++.|+.++|++.|.++.+....+..-...+..++..+.-.+++..+.....++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455555555566666666666655555432111112233444444555555555555544443
No 316
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=86.90 E-value=20 Score=31.30 Aligned_cols=133 Identities=8% Similarity=0.092 Sum_probs=69.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006630 264 YVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343 (638)
Q Consensus 264 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 343 (638)
+.++.+.+.+++|+...+..+++.+.+.|.+....++ ...++-+|.......+-.+. +....+.++=-+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 4455566677788888888888888888776554443 33444455544433332222 2222333333333321
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410 (638)
Q Consensus 344 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 410 (638)
=...+..++..+...|++-+|+++.+...... ......++.+..+.++...-..+++...
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 01134556666777788888887776643221 1112334555555555544444444443
No 317
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.52 E-value=20 Score=30.91 Aligned_cols=62 Identities=18% Similarity=0.259 Sum_probs=34.1
Q ss_pred HHHHHHHHH---HhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhC
Q 006630 140 VYRALIKSL---SKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKY 203 (638)
Q Consensus 140 ~~~~li~~~---~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 203 (638)
+.+.||..+ .+.++.+++..+++.+....|..+...++...+ ++..|++.+|+.+|+.+...
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhcc
Confidence 334444443 245666666666666666666544444443333 34566666666666665443
No 318
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.31 E-value=18 Score=37.92 Aligned_cols=132 Identities=18% Similarity=0.145 Sum_probs=94.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHH
Q 006630 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219 (638)
Q Consensus 140 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 219 (638)
.-+.+++.+.+.|-.++|+++- ++ ++ .-| ....+.|+++.|.++..+. .+..-|..|.++.
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s-------~D-~d-~rF----elal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS-------TD-PD-QRF----ELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAA 676 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC-------CC-hh-hhh----hhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHH
Confidence 4556667777777777666542 11 11 222 2334689999998887653 4667899999999
Q ss_pred HhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 006630 220 CKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299 (638)
Q Consensus 220 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 299 (638)
.+.|++..|.+.|..... |..|+-.+...|+.+....+-....+.|. .|...-+|...|+++++.+
T Consensus 677 l~~~~l~lA~EC~~~a~d--------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 677 LSAGELPLASECFLRARD--------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLE 742 (794)
T ss_pred hhcccchhHHHHHHhhcc--------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHH
Confidence 999999999999987653 67788888888988877777777776662 2344456778899999998
Q ss_pred HHHHH
Q 006630 300 LLKEM 304 (638)
Q Consensus 300 ~~~~~ 304 (638)
++..-
T Consensus 743 lLi~t 747 (794)
T KOG0276|consen 743 LLIST 747 (794)
T ss_pred HHHhc
Confidence 87654
No 319
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=86.01 E-value=38 Score=33.57 Aligned_cols=123 Identities=12% Similarity=0.102 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---cCCHHHHHHH
Q 006630 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS---NGHVKEACSY 547 (638)
Q Consensus 471 ~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~ 547 (638)
.-+.+++++++.+ +.+...+..++..+.+..+.+...+-|++++.... -+...|...++.... .-.+.+....
T Consensus 49 ~klsilerAL~~n---p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~-~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 49 RKLSILERALKHN---PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP-GSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 3444555555543 23444444555555555555555555555555411 134445544443322 1123344444
Q ss_pred HHHHHh------CCC------CCC--H---HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 548 CLDMMD------ADV------MPQ--P---DTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 548 ~~~m~~------~~~------~p~--~---~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
|.+.++ .+. .|+ . .++..+...+...|-.+.|..+++-+++++--.|..+
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~ 191 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPESL 191 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcccc
Confidence 333321 010 011 1 1233333344566888888888888888876555543
No 320
>PRK12798 chemotaxis protein; Reviewed
Probab=85.92 E-value=42 Score=33.94 Aligned_cols=182 Identities=12% Similarity=0.134 Sum_probs=108.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCCc----HHHHHHHHHHHHHcCC
Q 006630 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL-GQGCLIEACEYFKEMVGRGLLSAPQ----YGTLKALLNSLLRAQK 505 (638)
Q Consensus 431 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~p~----~~~~~~ll~~~~~~g~ 505 (638)
.|+.++|.+.+..+.....++....|..|+.+-. ...++.+|+++|+...-.- |. ...+.--+-.....|+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLla----PGTLvEEAALRRsi~la~~~g~ 200 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLA----PGTLVEEAALRRSLFIAAQLGD 200 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhC----CchHHHHHHHHHhhHHHHhcCc
Confidence 6888888888888877766777777877776644 3567888888888776542 33 2223333344567788
Q ss_pred HHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhhcCHHHHH
Q 006630 506 VEMAKDVWSCIVTKGCELNVY---AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ--PDTFAKLMRGLKKLYNRQIAA 580 (638)
Q Consensus 506 ~~~A~~~~~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~g~~~~A~ 580 (638)
.+++..+-.+...+ +..++. .+..+..++.+.++-..- ..+..++.. +.|+ ...|..+...-...|+.+.|.
T Consensus 201 ~~rf~~la~~Y~rR-F~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~ 277 (421)
T PRK12798 201 ADKFEALARNYLRR-FRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSF-MDPERQRELYLRIARAALIDGKTELAR 277 (421)
T ss_pred HHHHHHHHHHHHHH-hccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHH
Confidence 88777666655544 222222 223334444444422211 123444432 1333 456888888778889999999
Q ss_pred HHHHHHHHHHHhcccc---cchhhh-----hhhhhhHHHHHhhhhhh
Q 006630 581 EITEKVRKMAAERQIT---FKMYKR-----RGERDLKEKAKKQVDGR 619 (638)
Q Consensus 581 ~~~~~~~~~~p~~~~~---~~~y~~-----~g~~~~A~~~~~~~~~~ 619 (638)
...+++..+..+.... ..+|.. ..+.+++.+....+...
T Consensus 278 ~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~ 324 (421)
T PRK12798 278 FASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRD 324 (421)
T ss_pred HHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChh
Confidence 9999999887443322 234432 24466666665555443
No 321
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.79 E-value=7.9 Score=37.03 Aligned_cols=103 Identities=19% Similarity=0.233 Sum_probs=65.1
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006630 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG---CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384 (638)
Q Consensus 308 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 384 (638)
|......+...++..-....+++.+...+-++...- ..|+.. -.+.++. +-.-++++++.++..=++.|+.||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irl-llky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHH-HHccChHHHHHHHhCcchhccccchh
Confidence 444455555666666666677777777777765431 011111 1122222 22345667887777777778888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 385 TYLHIMLAHEKKEELEECVELMGEMRKI 412 (638)
Q Consensus 385 t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 412 (638)
++..+|+.+.+.+++.+|.++...|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888888777766554
No 322
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.54 E-value=0.11 Score=44.51 Aligned_cols=111 Identities=12% Similarity=0.085 Sum_probs=76.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcC
Q 006630 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN 575 (638)
Q Consensus 496 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 575 (638)
++..+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++. .+......++..|.+.|-
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4566677788888888888888765555688889999999999887888777652 122344567788888888
Q ss_pred HHHHHHHHHHHHHHHHhcccccchhhhhhhhhhHHHHHhhhh
Q 006630 576 RQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKAKKQVD 617 (638)
Q Consensus 576 ~~~A~~~~~~~~~~~p~~~~~~~~y~~~g~~~~A~~~~~~~~ 617 (638)
++.|.-++.+ ......+++++...+++++|.+...+..
T Consensus 86 ~~~a~~Ly~~----~~~~~~al~i~~~~~~~~~a~e~~~~~~ 123 (143)
T PF00637_consen 86 YEEAVYLYSK----LGNHDEALEILHKLKDYEEAIEYAKKVD 123 (143)
T ss_dssp HHHHHHHHHC----CTTHTTCSSTSSSTHCSCCCTTTGGGCS
T ss_pred HHHHHHHHHH----cccHHHHHHHHHHHccHHHHHHHHHhcC
Confidence 8888887765 2233344555666677777776555543
No 323
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.53 E-value=2.5 Score=25.25 Aligned_cols=31 Identities=10% Similarity=0.218 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 006630 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKP 169 (638)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 169 (638)
.+|..+...|...|++++|+..|++..+.+|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 3566677777777777777777777766654
No 324
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.50 E-value=34 Score=32.59 Aligned_cols=60 Identities=15% Similarity=0.057 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006630 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517 (638)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 517 (638)
.++.....|..+|.+.+|.++.+..+..+ +.+...+..+++.+...|+--.+.+-++.+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld---pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD---PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC---hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34445556666777777777777666665 3455566666666777777655655555553
No 325
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=85.49 E-value=48 Score=34.29 Aligned_cols=166 Identities=9% Similarity=0.009 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006630 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461 (638)
Q Consensus 382 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 461 (638)
|.....+++..+..+....-...+..+|...| .+...|..++.+|... ..++-..+|+++.+.+ -.|++.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~d-fnDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD-FNDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc-chhHHHHHHHHH
Confidence 44444455555555555555555555555432 3444555555555555 4455555555555543 123333333333
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHc
Q 006630 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQ---YGTLKALLNSLLRAQKVEMAKDVWSCIVTK-GCELNVYAWTIWIHSLFS 537 (638)
Q Consensus 462 ~~~~~g~~~~A~~~~~~m~~~~~~~~p~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~ 537 (638)
-|.+ ++.+.+..+|..+...-+....+ ...|..+... -..+.+.-..+...+.+. |...-.+.+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3333 55555555555555443310001 1122222110 123444444444444333 333334444444455556
Q ss_pred cCCHHHHHHHHHHHHhC
Q 006630 538 NGHVKEACSYCLDMMDA 554 (638)
Q Consensus 538 ~g~~~~A~~~~~~m~~~ 554 (638)
..++.+|++++..+++.
T Consensus 218 ~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 218 NENWTEAIRILKHILEH 234 (711)
T ss_pred ccCHHHHHHHHHHHhhh
Confidence 66666666666655543
No 326
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.63 E-value=2.6 Score=26.55 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 006630 561 DTFAKLMRGLKKLYNRQIAAEITEKVRKM 589 (638)
Q Consensus 561 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 589 (638)
.+++.+...|...|++++|+.+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45677777777778888888777777764
No 327
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.60 E-value=29 Score=31.00 Aligned_cols=89 Identities=18% Similarity=0.172 Sum_probs=60.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHH-----HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006630 460 VHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA-----LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534 (638)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~-----ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 534 (638)
...+...|++++|..-++..+.. |....+.. |.......|.+|+|...++.....+. .......-.++
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~-----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDi 168 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ-----TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDI 168 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc-----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhH
Confidence 45577788888888888877654 22233333 34556678888888888877654322 12223334578
Q ss_pred HHccCCHHHHHHHHHHHHhCC
Q 006630 535 LFSNGHVKEACSYCLDMMDAD 555 (638)
Q Consensus 535 ~~~~g~~~~A~~~~~~m~~~~ 555 (638)
+...|+.++|..-|++.+..+
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHcCchHHHHHHHHHHHHcc
Confidence 888999999999998888764
No 328
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=84.52 E-value=3 Score=24.82 Aligned_cols=31 Identities=10% Similarity=0.215 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 006630 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKP 169 (638)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 169 (638)
..|..+...|.+.|++++|++.|++.....|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 3466677777777888888888777776654
No 329
>PRK09687 putative lyase; Provisional
Probab=84.22 E-value=42 Score=32.49 Aligned_cols=80 Identities=8% Similarity=-0.082 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHCCCCCCHHHHH
Q 006630 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKL----VEAKYVLVQMKDAGFEPDIVVYN 282 (638)
Q Consensus 207 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~~~~ 282 (638)
+|..+....+..+...|..+ +...+..+.. .+|...-...+.++.+.|+. .++...+..+... .++...-.
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~--~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQD-VFRLAIELCS--SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CCHHHHHHHHHHHHhcCcch-HHHHHHHHHh--CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 44444444455555444322 2222222221 12444444555555555542 3455555554322 34444444
Q ss_pred HHHHHHHHc
Q 006630 283 NLLSGYAQM 291 (638)
Q Consensus 283 ~ll~~~~~~ 291 (638)
..+.++...
T Consensus 110 ~A~~aLG~~ 118 (280)
T PRK09687 110 SAINATGHR 118 (280)
T ss_pred HHHHHHhcc
Confidence 444444443
No 330
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=83.92 E-value=1.3e+02 Score=37.79 Aligned_cols=115 Identities=10% Similarity=0.063 Sum_probs=57.5
Q ss_pred HHhcCCHHHHHHHHHhchhCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHH
Q 006630 184 FASARMVKKAIEVLDEMPKYGC--EPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVE 261 (638)
Q Consensus 184 ~~~~~~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 261 (638)
-.+.+.+..|+..++.-..... ......|-.+...|...+++|....+...-.. .|+ ...-|-.....|++..
T Consensus 1393 Sfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a--~~s---l~~qil~~e~~g~~~d 1467 (2382)
T KOG0890|consen 1393 SFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA--DPS---LYQQILEHEASGNWAD 1467 (2382)
T ss_pred HHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc--Ccc---HHHHHHHHHhhccHHH
Confidence 3345566666666665211100 11223333444466666666666555442110 111 2233444555677777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 006630 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304 (638)
Q Consensus 262 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 304 (638)
|...|+.+...+ ++...+++-++......|.+....-..+-.
T Consensus 1468 a~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~ 1509 (2382)
T KOG0890|consen 1468 AAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGL 1509 (2382)
T ss_pred HHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcch
Confidence 777777776553 233556666666555666666555544433
No 331
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=83.80 E-value=3.7 Score=42.54 Aligned_cols=94 Identities=15% Similarity=0.041 Sum_probs=72.3
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHH
Q 006630 502 RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAE 581 (638)
Q Consensus 502 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~ 581 (638)
-.|+...|...+..+......-.-+....|...+.+.|...+|-.++.+.+... ...+.++..+.+++....|.++|.+
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 468888888888777654222233445566777778888888998888877644 5567788889999999999999999
Q ss_pred HHHHHHHHHHhcccc
Q 006630 582 ITEKVRKMAAERQIT 596 (638)
Q Consensus 582 ~~~~~~~~~p~~~~~ 596 (638)
.++.+++++|+++..
T Consensus 698 ~~~~a~~~~~~~~~~ 712 (886)
T KOG4507|consen 698 AFRQALKLTTKCPEC 712 (886)
T ss_pred HHHHHHhcCCCChhh
Confidence 999999999998875
No 332
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=83.72 E-value=1.5 Score=25.17 Aligned_cols=30 Identities=23% Similarity=0.151 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 563 FAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 563 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
|..+...+...|+++.|...++++++..|+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 445555556666666666666666665543
No 333
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.70 E-value=8.9 Score=34.42 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhhcCHHHH
Q 006630 539 GHVKEACSYCLDMMD---ADVMPQPDTFAKLMRGLKKLYNRQIA 579 (638)
Q Consensus 539 g~~~~A~~~~~~m~~---~~~~p~~~t~~~ll~~~~~~g~~~~A 579 (638)
-+.++|+.++.+.++ .+-.+|+..+.+|...+.+.|+++.|
T Consensus 154 rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 154 RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344445554444443 11134455555555555555555444
No 334
>PRK11619 lytic murein transglycosylase; Provisional
Probab=83.55 E-value=76 Score=34.95 Aligned_cols=272 Identities=9% Similarity=-0.001 Sum_probs=141.4
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchh
Q 006630 123 RYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK 202 (638)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 202 (638)
.+..|....++.+.....-...+..+.+.+++.+.++++. ..| .+...-.....+....|+.++|......+-.
T Consensus 84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~----~~p--~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~ 157 (644)
T PRK11619 84 QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSP----EKP--KPVEARCNYYYAKWATGQQQEAWQGAKELWL 157 (644)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcC----CCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4444555555555555555556667777788877766331 112 3555556677788888888888877777766
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHH
Q 006630 203 YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCK------------EGKLVEAKYVLVQM 269 (638)
Q Consensus 203 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~m 269 (638)
.| ...+..++.+++.+.+.|.+.... +..+|... ...+...-..+...+.. ..+...+..++.
T Consensus 158 ~g-~~~p~~cd~l~~~~~~~g~lt~~d-~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~-- 233 (644)
T PRK11619 158 TG-KSLPNACDKLFSVWQQSGKQDPLA-YLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFAR-- 233 (644)
T ss_pred cC-CCCChHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhh--
Confidence 65 445667888888887766554322 22222110 01122222222221100 011111111111
Q ss_pred HHCCCCCCHHHHHHHHHHHH--HcCCHhHHHHHHHHHHHc-CCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006630 270 KDAGFEPDIVVYNNLLSGYA--QMGKMTDAFELLKEMRRK-GCDPNA--NSYTVLIQALCRMEKMEEANRAFVEMERSGC 344 (638)
Q Consensus 270 ~~~g~~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~-g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 344 (638)
.+.|+...-..++-++. ...+.+.|..++...... ++.+.. .++..+.......+..++|...++......
T Consensus 234 ---~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~- 309 (644)
T PRK11619 234 ---TTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS- 309 (644)
T ss_pred ---ccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-
Confidence 11223222221222222 234667888888876443 222221 223333333333322556666666654332
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410 (638)
Q Consensus 345 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 410 (638)
.|......-+......++++.+...+..|....- -...-.--+..++...|+.++|..+|+.+.
T Consensus 310 -~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 310 -QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred -CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 2333344444455578888888888887755322 244455566777677888888888887764
No 335
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=83.37 E-value=35 Score=31.01 Aligned_cols=64 Identities=17% Similarity=0.022 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 209 EFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272 (638)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (638)
+.+||.|.--+...|+++.|.+.|+...+-.|....+...-.-.+.-.|++.-|.+=|.+.-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 3567777777777777777777777776654444333322222333456777776666555544
No 336
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.34 E-value=10 Score=29.35 Aligned_cols=60 Identities=17% Similarity=0.303 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHH
Q 006630 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320 (638)
Q Consensus 260 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 320 (638)
-++.+-++.+....+.|++....+.+++|.+.+++..|.++++-++.+ +..+...|..++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~l 83 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHH
Confidence 355666666666777888888888888888888888888888876643 222334555554
No 337
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.70 E-value=7.8 Score=30.30 Aligned_cols=60 Identities=17% Similarity=0.317 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 006630 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321 (638)
Q Consensus 261 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 321 (638)
+..+-++.+....+.|++....+.+++|.+.+++..|.++++-++.+ +.+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 45555666666677788888888888888888888888888877654 2222335665553
No 338
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.47 E-value=7.5 Score=30.39 Aligned_cols=60 Identities=12% Similarity=0.217 Sum_probs=36.8
Q ss_pred HHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 006630 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLY 251 (638)
Q Consensus 192 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 251 (638)
+..+-++.+....+-|++.+..+.+.+|.+.+++..|.++|+.++.+..+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 444555555566667888888888888888888888888888777654444335555443
No 339
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=82.28 E-value=55 Score=32.45 Aligned_cols=121 Identities=9% Similarity=0.076 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHH---cCCHHHHHH
Q 006630 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR---AQKVEMAKD 511 (638)
Q Consensus 435 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~---~g~~~~A~~ 511 (638)
+.-+.++++..+.+ +.+...+..++..+.+....++..+.+++++... +-+...|...|+.... .-.++....
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~---~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN---PGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC---CCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 34445555555553 3444555556666666666666666666666654 2344555555554443 223455555
Q ss_pred HHHHHHHc------CC------CCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC
Q 006630 512 VWSCIVTK------GC------ELN-----VYAWTIWIHSLFSNGHVKEACSYCLDMMDADV-MPQ 559 (638)
Q Consensus 512 ~~~~~~~~------~~------~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~ 559 (638)
+|.+.+.. +. .++ ...+.-+...+.+.|..+.|+.+++.+++.++ .|.
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~ 189 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPE 189 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcc
Confidence 55444332 10 001 11222333445677888888888888887553 444
No 340
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=81.64 E-value=51 Score=35.75 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=18.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006630 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEE 163 (638)
Q Consensus 134 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 163 (638)
..+++.-|+ .+..+.-.|.++.|.+++..
T Consensus 145 ~~~~p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 145 YEHDPDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp CSGSHHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred CccchhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 345567777 45666666888888877743
No 341
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=81.57 E-value=61 Score=32.44 Aligned_cols=65 Identities=6% Similarity=0.031 Sum_probs=39.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA---DVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376 (638)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (638)
...++..++..+.+.|.++.|...+..+...+... ++...-.-...+-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44566677777777777777777777776532111 223333334555566777777777776665
No 342
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.42 E-value=33 Score=29.23 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=40.2
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCC
Q 006630 150 KMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYG 204 (638)
Q Consensus 150 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 204 (638)
..++++++..+++.|.-..|..+...+|...+ +...|++++|+++|+.+.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 46788888888888888877766666665554 467888888888888887653
No 343
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.41 E-value=17 Score=32.66 Aligned_cols=22 Identities=9% Similarity=-0.097 Sum_probs=9.9
Q ss_pred CCHHHHHHHHHHHHccCCHHHH
Q 006630 523 LNVYAWTIWIHSLFSNGHVKEA 544 (638)
Q Consensus 523 p~~~~~~~li~~~~~~g~~~~A 544 (638)
+|+..+.+|+..+.+.|+++.|
T Consensus 176 ~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 176 FNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHHHhcchhhh
Confidence 3444444444444444444444
No 344
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.39 E-value=45 Score=30.80 Aligned_cols=211 Identities=14% Similarity=0.115 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375 (638)
Q Consensus 296 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 375 (638)
++.++..+..+......... .+.-.+.+++|-++|.+.... -.=...|+.-..+|++.-+ +. .
T Consensus 3 ~a~~l~k~AEkK~~~s~gF~------lfgg~~k~eeAadl~~~Aan~--yklaK~w~~AG~aflkaA~------~h---~ 65 (288)
T KOG1586|consen 3 DAVQLMKKAEKKLNGSGGFL------LFGGSNKYEEAAELYERAANM--YKLAKNWSAAGDAFLKAAD------LH---L 65 (288)
T ss_pred cHHHHHHHHHHhcccCCccc------ccCCCcchHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHH------HH---H
Confidence 34555555555432222111 344456788888888765421 0011223333333332211 10 1
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006630 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455 (638)
Q Consensus 376 ~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 455 (638)
+.|-+-|..+-..-..-|.+.++.++|...++..+ ..|...|++..|-+...++-+
T Consensus 66 k~~skhDaat~YveA~~cykk~~~~eAv~cL~~ai---------------eIyt~~Grf~~aAk~~~~iaE--------- 121 (288)
T KOG1586|consen 66 KAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAI---------------EIYTDMGRFTMAAKHHIEIAE--------- 121 (288)
T ss_pred hcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHH---------------HHHHhhhHHHHHHhhhhhHHH---------
Confidence 22333333322222333445557777766655443 345566666655444333322
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHhC--CCC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006630 456 FVVMVHGFLGQ-GCLIEACEYFKEMVGR--GLL-SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531 (638)
Q Consensus 456 ~~~li~~~~~~-g~~~~A~~~~~~m~~~--~~~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 531 (638)
.|-.. .++++|+..|++.-+- +-. .......+..+..--...+++.+|+++|+++.......+..-|..-
T Consensus 122 ------iyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~K 195 (288)
T KOG1586|consen 122 ------IYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAK 195 (288)
T ss_pred ------HHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHH
Confidence 22221 3344555555544331 100 0011122333333344667788888888887766444333333321
Q ss_pred ---H-HHHH--ccCCHHHHHHHHHHHHh
Q 006630 532 ---I-HSLF--SNGHVKEACSYCLDMMD 553 (638)
Q Consensus 532 ---i-~~~~--~~g~~~~A~~~~~~m~~ 553 (638)
+ .++| -.++.-.+...+++..+
T Consensus 196 dyflkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 196 DYFLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 1 1222 22454455555555554
No 345
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=80.88 E-value=17 Score=31.99 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006630 507 EMAKDVWSCIVTKGCELNVYAWTIWIHSL 535 (638)
Q Consensus 507 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 535 (638)
++|.+.|+++... +|+...|+.-+...
T Consensus 97 ~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 97 EKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 3344444444433 56666666555443
No 346
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.71 E-value=94 Score=34.09 Aligned_cols=103 Identities=6% Similarity=0.018 Sum_probs=57.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCH
Q 006630 146 KSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV 225 (638)
Q Consensus 146 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 225 (638)
+-+.+.+.+++|++..+.....-+...........|..+...|++++|-...-.|. .-+..-|.--+.-+...++.
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~----gn~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML----GNNAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh----cchHHHHHHHHHHhcccccc
Confidence 44567777888887766544332221234556667777777788888777776665 23445555555555555544
Q ss_pred HHHHHHHHHHhccCC-CCHHHHHHHHHHHHh
Q 006630 226 KEAAKLFDEMRERFK-PSLRHFTSLLYGWCK 255 (638)
Q Consensus 226 ~~A~~~~~~~~~~~~-~~~~~~~~li~~~~~ 255 (638)
.. ++.-++...+ .+...|..++..+..
T Consensus 440 ~~---Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 440 TD---IAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ch---hhccCCCCCcccCchHHHHHHHHHHH
Confidence 32 2222333211 244556666666655
No 347
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.57 E-value=4.4 Score=25.40 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006630 455 SFVVMVHGFLGQGCLIEACEYFKEMVG 481 (638)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (638)
+++.|...|...|++++|..++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 555566666666666666666655543
No 348
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.16 E-value=26 Score=27.25 Aligned_cols=60 Identities=13% Similarity=0.218 Sum_probs=40.9
Q ss_pred HHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 006630 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLL 250 (638)
Q Consensus 191 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 250 (638)
-+..+-++.+....+-|++.+..+-+.+|.+.+++..|.++|+.++.+...+...|..++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 345555556666667788888888888888888888888888877755444444555444
No 349
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=79.88 E-value=1e+02 Score=33.91 Aligned_cols=193 Identities=12% Similarity=0.063 Sum_probs=92.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-CCC-----HHHHHHHH--HHHHHcCCHHHHHHHHH--------HHHHCCCCCCHHHHH
Q 006630 394 EKKEELEECVELMGEMRKIGC-VPD-----VSNYNVVI--RLACKLGELKEAVNVWN--------EMEAASLSPGTDSFV 457 (638)
Q Consensus 394 ~~~g~~~~a~~~~~~~~~~~~-~~~-----~~~~~~li--~~~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~~ 457 (638)
+-.+++..+...++.+.+..- .|+ ...+..++ -.+-..|+++.|...|. .....+...+...+.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 346788889888888875311 111 11222222 23345799999999997 444444333333332
Q ss_pred H--HHHHHHhcC--CHHH--HHHHHHHHHhCCCCCCC--cHHHHHHH-HHHHHHcC--CHHHHHHHHHHHHHcC---CCC
Q 006630 458 V--MVHGFLGQG--CLIE--ACEYFKEMVGRGLLSAP--QYGTLKAL-LNSLLRAQ--KVEMAKDVWSCIVTKG---CEL 523 (638)
Q Consensus 458 ~--li~~~~~~g--~~~~--A~~~~~~m~~~~~~~~p--~~~~~~~l-l~~~~~~g--~~~~A~~~~~~~~~~~---~~p 523 (638)
. ++..+...+ ...+ +-++++.+...--. .| +..+...+ +.++.... ...++...+.+..+.- ...
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n 530 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSN-SPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGN 530 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccC-CccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhcc
Confidence 2 122222222 2223 66666655442110 22 22233333 33332211 1234555444433221 111
Q ss_pred C---HHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCC--HHHHHHHHH-----HHHhhcCHHHHHHHHHHHHH
Q 006630 524 N---VYAWTIWIHSLFSNGHVKEACSYCLDMMDA-DVMPQ--PDTFAKLMR-----GLKKLYNRQIAAEITEKVRK 588 (638)
Q Consensus 524 ~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~--~~t~~~ll~-----~~~~~g~~~~A~~~~~~~~~ 588 (638)
+ ....+.|...+. .|+..|........... ...|| ...|..+.. .+...|+.++|..+..+.-.
T Consensus 531 ~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 531 SQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred chHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 1 223444444444 78888766665554331 11233 344644443 45667999999988877654
No 350
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.65 E-value=1.1e+02 Score=34.04 Aligned_cols=143 Identities=16% Similarity=0.128 Sum_probs=90.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCC
Q 006630 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNS 223 (638)
Q Consensus 144 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 223 (638)
-.+-+.+.|++++|...|-+-... ..+. .++.-|....+..+-..+++.+.+.|+. +..--..|+.+|.+.+
T Consensus 374 Ygd~Ly~Kgdf~~A~~qYI~tI~~--le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlk 445 (933)
T KOG2114|consen 374 YGDYLYGKGDFDEATDQYIETIGF--LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLK 445 (933)
T ss_pred HHHHHHhcCCHHHHHHHHHHHccc--CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhc
Confidence 344555789999998887554321 2122 2777777778888888889999888864 4445577899999999
Q ss_pred CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 006630 224 SVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303 (638)
Q Consensus 224 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 303 (638)
+.++-.++.+...++.- ..-....+..+.+.+-.++|.-+-.+... .......++. ..+++++|++.++.
T Consensus 446 d~~kL~efI~~~~~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ille---~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 446 DVEKLTEFISKCDKGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILLE---DLHNYEEALRYISS 515 (933)
T ss_pred chHHHHHHHhcCCCcce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhc
Confidence 98887776665542200 11134566667777777777666554432 3333333333 55677777776655
Q ss_pred H
Q 006630 304 M 304 (638)
Q Consensus 304 ~ 304 (638)
+
T Consensus 516 l 516 (933)
T KOG2114|consen 516 L 516 (933)
T ss_pred C
Confidence 4
No 351
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.03 E-value=66 Score=30.79 Aligned_cols=43 Identities=21% Similarity=0.246 Sum_probs=24.2
Q ss_pred HHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 006630 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDE 234 (638)
Q Consensus 190 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 234 (638)
..+|+++|..+... .....+-+.++.++....+..+|...|..
T Consensus 149 s~KA~ELFayLv~h--kgk~v~~~~~ie~lwpe~D~kka~s~lhT 191 (361)
T COG3947 149 SRKALELFAYLVEH--KGKEVTSWEAIEALWPEKDEKKASSLLHT 191 (361)
T ss_pred hhHHHHHHHHHHHh--cCCcccHhHHHHHHccccchhhHHHHHHH
Confidence 35677777666654 22234445556666666666666655543
No 352
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=76.79 E-value=1.2e+02 Score=33.01 Aligned_cols=32 Identities=13% Similarity=0.201 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhch
Q 006630 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMP 201 (638)
Q Consensus 169 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 201 (638)
|...++..|. .+..+.-.|.++.|.+++....
T Consensus 144 p~~~~p~FW~-~v~~lvlrG~~~~a~~lL~~~s 175 (566)
T PF07575_consen 144 PYEHDPDFWD-YVQRLVLRGLFDQARQLLRLHS 175 (566)
T ss_dssp SCSGSHHHHH-HHHHHHHTT-HHHHHHHH-TTT
T ss_pred CCccchhHHH-HHHHHHHcCCHHHHHHHHHhcc
Confidence 3333467776 6777888899999999996544
No 353
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.21 E-value=0.84 Score=43.93 Aligned_cols=113 Identities=11% Similarity=0.103 Sum_probs=78.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhhcCHHH
Q 006630 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT-FAKLMRGLKKLYNRQI 578 (638)
Q Consensus 500 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~g~~~~ 578 (638)
....|.++.|++.|...+... .+....|.--..++.+.++...|+.-+...++. .||..- |..-..+-+-+|++++
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHH
Confidence 346788999999999888763 345555666677888999999999888877643 566433 4444455566789999
Q ss_pred HHHHHHHHHHHHHhc--cccc-chhhhhhhhhhHHHHHhh
Q 006630 579 AAEITEKVRKMAAER--QITF-KMYKRRGERDLKEKAKKQ 615 (638)
Q Consensus 579 A~~~~~~~~~~~p~~--~~~~-~~y~~~g~~~~A~~~~~~ 615 (638)
|...++.+.+++-+. ...+ .+.-..++.++=...+++
T Consensus 201 aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er 240 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYER 240 (377)
T ss_pred HHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHH
Confidence 999999998886442 2223 566666666655555444
No 354
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=75.85 E-value=1.4e+02 Score=33.43 Aligned_cols=230 Identities=13% Similarity=0.028 Sum_probs=124.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHH-HHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 006630 358 FCKSRKIDRCYEILDSMIQRGILPNQ-------LTYLHIML-AHEKKEELEECVELMGEMRKI----GCVPDVSNYNVVI 425 (638)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~~~~p~~-------~t~~~ll~-~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li 425 (638)
.....++++|..++.++...-..|+. ..++.+-. .....|+++.|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34568899999988887654222221 12333221 234568889999888777653 2345566677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHH--HHHHhcCC--HHHHHHHHHHHHhCCCCCC----CcHHHHH
Q 006630 426 RLACKLGELKEAVNVWNEMEAASLSPGT---DSFVVMV--HGFLGQGC--LIEACEYFKEMVGRGLLSA----PQYGTLK 494 (638)
Q Consensus 426 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li--~~~~~~g~--~~~A~~~~~~m~~~~~~~~----p~~~~~~ 494 (638)
.+..-.|++++|..+..+..+..-.-+. ..|..+. ..+..+|+ ..+....|........... +-..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 7888899999999988766543212222 2333332 23455673 3333334443333211101 2233445
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHccCCHHHHHHHHHHHHhCCCCC----CHHHHHHHH
Q 006630 495 ALLNSLLRA-QKVEMAKDVWSCIVTKGCELNVYAW--TIWIHSLFSNGHVKEACSYCLDMMDADVMP----QPDTFAKLM 567 (638)
Q Consensus 495 ~ll~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----~~~t~~~ll 567 (638)
.++.++.+. +...++..-++.-......|-.... ..|+......|+.++|...++++......+ +-..-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 555555552 2222222222222222222222222 267788889999999999999987633233 222222222
Q ss_pred HH--HHhhcCHHHHHHHHHHHH
Q 006630 568 RG--LKKLYNRQIAAEITEKVR 587 (638)
Q Consensus 568 ~~--~~~~g~~~~A~~~~~~~~ 587 (638)
+. ....||.+.+.....+..
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred hHHHhcccCCHHHHHHHHHhcc
Confidence 22 234589988888776643
No 355
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=75.72 E-value=23 Score=32.18 Aligned_cols=77 Identities=16% Similarity=0.231 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHH
Q 006630 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS--LSPGTDSFVVMVHG 462 (638)
Q Consensus 385 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~ 462 (638)
|....++.+.+.+.+.+++.....-++.. +.|...-..+++.||-.|++++|..-++-.-... ..+....|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34455666777778888887777766654 5566666777788888888888877776554432 12334455555543
No 356
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=75.71 E-value=13 Score=33.67 Aligned_cols=76 Identities=14% Similarity=0.087 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 006630 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA--DVMPQPDTFAKLMR 568 (638)
Q Consensus 492 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~t~~~ll~ 568 (638)
|....++.+.+.+.+++|+...+.-++.. +-|...-..++..|+-.|++++|..-++-.-+. ...+...+|..++.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 44556777888899999999888777763 225556677888999999999998777665433 11233445555554
No 357
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=74.17 E-value=8.5 Score=22.80 Aligned_cols=28 Identities=18% Similarity=0.107 Sum_probs=22.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006630 527 AWTIWIHSLFSNGHVKEACSYCLDMMDA 554 (638)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 554 (638)
+|..+...|...|++++|...|++.++.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5667778888888888888888887653
No 358
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=73.86 E-value=6.7 Score=22.94 Aligned_cols=27 Identities=15% Similarity=0.319 Sum_probs=18.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCC
Q 006630 143 ALIKSLSKMRKFGAVWALMEEMRKEKP 169 (638)
Q Consensus 143 ~li~~~~~~~~~~~A~~~~~~m~~~~~ 169 (638)
.+..++.+.|++++|.+.|+++....|
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 345566667777777777777776654
No 359
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=72.20 E-value=44 Score=26.21 Aligned_cols=85 Identities=16% Similarity=0.112 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006630 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548 (638)
Q Consensus 469 ~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 548 (638)
.++|..+-+-+...+- ....+-.+-+..+...|+|++|..+.+.. +-||.+.|-++- -.+.|..+++..-+
T Consensus 21 HqEA~tIAdwL~~~~~---~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl 91 (115)
T TIGR02508 21 HQEANTIADWLHLKGE---SEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRL 91 (115)
T ss_pred HHHHHHHHHHHhcCCc---hHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHH
Confidence 4555555554444331 12222222234556677777777765544 467777776553 34566666666666
Q ss_pred HHHHhCCCCCCHHHH
Q 006630 549 LDMMDADVMPQPDTF 563 (638)
Q Consensus 549 ~~m~~~~~~p~~~t~ 563 (638)
.+|-..| .|....|
T Consensus 92 ~rla~sg-~p~lq~F 105 (115)
T TIGR02508 92 NRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHhCC-CHHHHHH
Confidence 5665544 4444443
No 360
>PRK10941 hypothetical protein; Provisional
Probab=71.90 E-value=19 Score=34.44 Aligned_cols=66 Identities=12% Similarity=0.054 Sum_probs=48.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 529 TIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 529 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
+.+-.+|.+.++++.|+...+.++.. .|+ +.-+.--.-.|.+.|.+..|..-++..++.-|++|.+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 34556777888888888888877754 454 4446666667778888888888888888888877765
No 361
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.67 E-value=1.9e+02 Score=32.94 Aligned_cols=26 Identities=31% Similarity=0.574 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHH
Q 006630 281 YNNLLSGYAQMGKMTDAFELLKEMRR 306 (638)
Q Consensus 281 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 306 (638)
|..|+..|...|+.++|++++.+..+
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 55566666666666666666666554
No 362
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=71.46 E-value=40 Score=32.03 Aligned_cols=88 Identities=13% Similarity=0.192 Sum_probs=57.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHh--
Q 006630 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCK-- 221 (638)
Q Consensus 144 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-- 221 (638)
=|.+++..+++.+++...-+.-.. |....+...-.-|-.|.+.+.+..+.++-..-...--..+...|..++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~-pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQV-PEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcC-cccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 367888888888887665554433 44456666777777778888888877777665544222333446666555544
Q ss_pred ---CCCHHHHHHHH
Q 006630 222 ---NSSVKEAAKLF 232 (638)
Q Consensus 222 ---~g~~~~A~~~~ 232 (638)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 57777777766
No 363
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=70.70 E-value=36 Score=35.78 Aligned_cols=115 Identities=17% Similarity=0.096 Sum_probs=57.1
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 006630 227 EAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR 306 (638)
Q Consensus 227 ~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 306 (638)
-+-.+|-.|..-..|-..+.|...-.+.-.|+...|...+............+....|.+...+.|....|..++.+.+.
T Consensus 591 ~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~ 670 (886)
T KOG4507|consen 591 IGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALA 670 (886)
T ss_pred HHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHh
Confidence 34444444444333333333333333444566666666655554332222233444455555555555556665555544
Q ss_pred cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006630 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342 (638)
Q Consensus 307 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (638)
.. ....-++-.+.++|....+++.|++.|++..+.
T Consensus 671 ~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 671 IN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred hc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 32 223344555566666666666666666665544
No 364
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=70.43 E-value=1.8e+02 Score=32.30 Aligned_cols=96 Identities=14% Similarity=0.084 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHH---hCCCHHHHHHHHHHHhccCCCCHHHHHHH
Q 006630 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALC---KNSSVKEAAKLFDEMRERFKPSLRHFTSL 249 (638)
Q Consensus 173 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 249 (638)
+...++.||..+.+.|++++-.+.-..|.+.- +.++..|..-+.-.. ..+....+..+|++.... ..++..|.-.
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~d-y~~v~iw~e~ 189 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGD-YNSVPIWEEV 189 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcc-cccchHHHHH
Confidence 44556677777778888777666666655442 444555544433322 236666677777665432 2355556655
Q ss_pred HHHHHhcC-------CHHHHHHHHHHHH
Q 006630 250 LYGWCKEG-------KLVEAKYVLVQMK 270 (638)
Q Consensus 250 i~~~~~~g-------~~~~A~~~~~~m~ 270 (638)
+..+...+ +++....+|.+.+
T Consensus 190 ~~y~~~~~~~~~~~~d~k~~R~vf~ral 217 (881)
T KOG0128|consen 190 VNYLVGFGNVAKKSEDYKKERSVFERAL 217 (881)
T ss_pred HHHHHhccccccccccchhhhHHHHHHH
Confidence 55554433 3444555555544
No 365
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=70.31 E-value=5.3 Score=40.59 Aligned_cols=106 Identities=15% Similarity=0.095 Sum_probs=81.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhh
Q 006630 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI-WIHSLFSNGHVKEACSYCLDMMDADVMPQPD-TFAKLMRGLKKL 573 (638)
Q Consensus 496 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~ 573 (638)
-++.....+.++.|..++.++++. .||...|-+ =..++.+.+++..|+.=+.++++. .|+-. .|..=..+|.+.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--DPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc--CchhhheeeeccHHHHhH
Confidence 456677888999999999999986 676555433 337888999999999888888765 45533 355556788889
Q ss_pred cCHHHHHHHHHHHHHHHHhcccccchhhhhhh
Q 006630 574 YNRQIAAEITEKVRKMAAERQITFKMYKRRGE 605 (638)
Q Consensus 574 g~~~~A~~~~~~~~~~~p~~~~~~~~y~~~g~ 605 (638)
+.+.+|...+++..++.|+++.+...+..+..
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 99999999999999999999888654444433
No 366
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=69.22 E-value=84 Score=30.75 Aligned_cols=102 Identities=16% Similarity=0.137 Sum_probs=59.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHH
Q 006630 493 LKALLNSLLRAQKVEMAKDVWSCIVTKG---CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT-FAKLMR 568 (638)
Q Consensus 493 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~ll~ 568 (638)
|..=.+-|.+..++..|...|.+.++.. ...+.+.|+.-..+-...|++..|+.=....+.. .|+..- |..-..
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--KPTHLKAYIRGAK 161 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--CcchhhhhhhhhH
Confidence 3334455677777778888777776652 2223455666666666677777777776666543 565432 333333
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 569 GLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 569 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
++..+..+..|..+.+..+..+-+...+
T Consensus 162 c~~eLe~~~~a~nw~ee~~~~d~e~K~~ 189 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQIDDEAKKA 189 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 4455566666666666665555544444
No 367
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=68.62 E-value=7.8 Score=39.45 Aligned_cols=106 Identities=10% Similarity=0.050 Sum_probs=67.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHc
Q 006630 460 VHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL-KALLNSLLRAQKVEMAKDVWSCIVTKGCELNV-YAWTIWIHSLFS 537 (638)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~ 537 (638)
+..+...+.++.|+.++.++++.. |+...| ..-..++.+.+++..|..=+..+++.. |+. ..|--=..++..
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld----pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~ 84 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD----PNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMA 84 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC----CcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHh
Confidence 455667788899999999998876 654443 333366778888888887777777652 321 122222334444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhh
Q 006630 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573 (638)
Q Consensus 538 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 573 (638)
.+++.+|+..|+... .+.|+..-....+.-|.+.
T Consensus 85 l~~~~~A~~~l~~~~--~l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 85 LGEFKKALLDLEKVK--KLAPNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHHHHHHHHHhh--hcCcCcHHHHHHHHHHHHH
Confidence 456666666666554 3478877777777777543
No 368
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=68.35 E-value=36 Score=26.45 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=12.4
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 569 GLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 569 ~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
.....|++++|.+.+++++++-.+
T Consensus 50 ~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555443
No 369
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=68.33 E-value=1.2e+02 Score=29.27 Aligned_cols=169 Identities=12% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh--cCCHHHHHHHH
Q 006630 400 EECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEA-ASLSPGTDSFVVMVHGFLG--QGCLIEACEYF 476 (638)
Q Consensus 400 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~ 476 (638)
++-...++-....-......-|..|+. +...+.+|+++|+.... ..+.-|......++..... +.....-.++.
T Consensus 113 ~Dli~FL~~~i~~~~~~k~~~Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV 189 (292)
T PF13929_consen 113 EDLISFLKLVIINLSSNKSFNYWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVV 189 (292)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHH
Q ss_pred HHHHhC--CCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHH---
Q 006630 477 KEMVGR--GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK-GCELNVYAWTIWIHSLFSNGHVKEACSYCLD--- 550 (638)
Q Consensus 477 ~~m~~~--~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--- 550 (638)
+-+... + .++..+...+++.++..+++..-.++|+..... +..-|...|..+|......|+..-...+.++
T Consensus 190 ~~l~~t~~~---~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhL 266 (292)
T PF13929_consen 190 DFLVSTFSK---SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHL 266 (292)
T ss_pred HHHHhcccc---CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCe
Q ss_pred --HHhCCCCCCHHHHHHHHHHHHhhc
Q 006630 551 --MMDADVMPQPDTFAKLMRGLKKLY 574 (638)
Q Consensus 551 --m~~~~~~p~~~t~~~ll~~~~~~g 574 (638)
+.+.++..+...-..+-..+.+.|
T Consensus 267 LwikR~~V~v~~~L~~~L~~LF~~vd 292 (292)
T PF13929_consen 267 LWIKRNNVDVTDELRSQLSELFKKVD 292 (292)
T ss_pred EEeeecCCcCCHHHHHHHHHHHHhcC
No 370
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=67.90 E-value=65 Score=26.23 Aligned_cols=80 Identities=15% Similarity=0.167 Sum_probs=42.7
Q ss_pred cCCHHHHHHHHHHHHh--CCCCC---------CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc-------c--
Q 006630 538 NGHVKEACSYCLDMMD--ADVMP---------QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT-------F-- 597 (638)
Q Consensus 538 ~g~~~~A~~~~~~m~~--~~~~p---------~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-------~-- 597 (638)
.|.+++|..-+.+..+ ..++| |...+..|..++..+|+++++..-.++++...-....+ +
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIa 101 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIA 101 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHH
Confidence 4556665555554433 22222 23345556666777777777776666666543222222 1
Q ss_pred ------chhhhhhhhhhHHHHHhhhh
Q 006630 598 ------KMYKRRGERDLKEKAKKQVD 617 (638)
Q Consensus 598 ------~~y~~~g~~~~A~~~~~~~~ 617 (638)
..+...|..++|.+.|++..
T Consensus 102 aVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 102 AVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 24566788999999888833
No 371
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=67.73 E-value=10 Score=38.64 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=27.1
Q ss_pred CCCCCH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc
Q 006630 555 DVMPQP--DTFAKLMRGLKKLYNRQIAAEITEKVRKMAAER 593 (638)
Q Consensus 555 ~~~p~~--~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 593 (638)
.+.|.+ .++...+..+.|.+|+..|..+.+++++++|..
T Consensus 293 ~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 293 KLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp ---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred CCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 344443 346677778889999999999999999998854
No 372
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=67.00 E-value=13 Score=24.11 Aligned_cols=20 Identities=40% Similarity=0.634 Sum_probs=8.4
Q ss_pred HHHHHcCCHhHHHHHHHHHH
Q 006630 286 SGYAQMGKMTDAFELLKEMR 305 (638)
Q Consensus 286 ~~~~~~g~~~~a~~~~~~~~ 305 (638)
.+|...|+.+.|.++++++.
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 33444444444444444443
No 373
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=66.11 E-value=65 Score=29.67 Aligned_cols=25 Identities=16% Similarity=-0.033 Sum_probs=15.2
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHH
Q 006630 566 LMRGLKKLYNRQIAAEITEKVRKMA 590 (638)
Q Consensus 566 ll~~~~~~g~~~~A~~~~~~~~~~~ 590 (638)
+.....+.|++++|.+.+.+++...
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3344556677777777776666543
No 374
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=65.53 E-value=2.4 Score=36.23 Aligned_cols=47 Identities=15% Similarity=0.060 Sum_probs=18.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 006630 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300 (638)
Q Consensus 254 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 300 (638)
.+.+.++....+++.+...+...+....+.++..|++.+..+...++
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~ 64 (143)
T PF00637_consen 18 EERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEF 64 (143)
T ss_dssp TTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHT
T ss_pred HhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHH
Confidence 33344444444444444333233344444444444444333333333
No 375
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.31 E-value=26 Score=31.69 Aligned_cols=35 Identities=17% Similarity=0.336 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 006630 557 MPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAA 591 (638)
Q Consensus 557 ~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 591 (638)
.|++.+|..++.++...|+.++|++..+++..+.|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 68888888888888888888888888888888777
No 376
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=65.23 E-value=1.4e+02 Score=28.94 Aligned_cols=17 Identities=12% Similarity=0.243 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhhcCHHH
Q 006630 562 TFAKLMRGLKKLYNRQI 578 (638)
Q Consensus 562 t~~~ll~~~~~~g~~~~ 578 (638)
+|.-|+.+++..|+.+.
T Consensus 323 ~yaPLL~af~s~g~sEL 339 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSEL 339 (412)
T ss_pred hhhHHHHHHhcCChHHH
Confidence 45666666666666553
No 377
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=64.85 E-value=1.6e+02 Score=29.70 Aligned_cols=96 Identities=11% Similarity=0.065 Sum_probs=63.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-ccCCHHHHHHHHHHHHhC------CCCCCHHHHHHHH
Q 006630 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF-SNGHVKEACSYCLDMMDA------DVMPQPDTFAKLM 567 (638)
Q Consensus 495 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~------~~~p~~~t~~~ll 567 (638)
..+..+.+.|-+..|.++.+-+...+..-|+.....+|+.|+ +.++++--+++++..... ..-|+ ..|...+
T Consensus 108 r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a~S~aL 186 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FAFSIAL 186 (360)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HHHHHHH
Confidence 345667788899999999888888755556666677777765 667888777777765431 01232 2344433
Q ss_pred HHHHhhcCH---------------HHHHHHHHHHHHHHHh
Q 006630 568 RGLKKLYNR---------------QIAAEITEKVRKMAAE 592 (638)
Q Consensus 568 ~~~~~~g~~---------------~~A~~~~~~~~~~~p~ 592 (638)
++...++. +.|.+.+.+++..-|.
T Consensus 187 -A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 187 -AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred -HHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 33344555 8888888888877765
No 378
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=64.83 E-value=9 Score=21.34 Aligned_cols=21 Identities=19% Similarity=0.096 Sum_probs=11.4
Q ss_pred HHHHHHHHhcCChhHHHHHHH
Q 006630 142 RALIKSLSKMRKFGAVWALME 162 (638)
Q Consensus 142 ~~li~~~~~~~~~~~A~~~~~ 162 (638)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344555555666666655543
No 379
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.53 E-value=2.7e+02 Score=31.75 Aligned_cols=62 Identities=11% Similarity=0.222 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHH---HHHhcCCHHHHHHHHHhchh
Q 006630 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMR---RFASARMVKKAIEVLDEMPK 202 (638)
Q Consensus 141 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~---~~~~~~~~~~A~~~~~~m~~ 202 (638)
+..=+..+.....|++|..+-+.....+|.......+..... -+...+++++|++.|+++..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 555667777888899998887655433322111111111222 13467889999999988764
No 380
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=63.14 E-value=8.6 Score=35.08 Aligned_cols=61 Identities=18% Similarity=0.136 Sum_probs=47.0
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 534 SLFSNGHVKEACSYCLDMMDADVMP-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 534 ~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
...+.|+.+.|.+++++.++. .| ...+|-.+...-.+.|+.+.|.+.+++.++++|++...
T Consensus 4 ~~~~~~D~~aaaely~qal~l--ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL--APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc--CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence 345678888888888887743 44 35668888887788899999999999999998887543
No 381
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=62.96 E-value=64 Score=25.36 Aligned_cols=78 Identities=12% Similarity=0.060 Sum_probs=40.5
Q ss_pred HhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006630 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373 (638)
Q Consensus 294 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 373 (638)
.++|..+-+.+...+-. ...+--+-+..+...|++++|..+.+.+. .||...|-+|-. .+.|..+++..-+.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 45555555555443211 22222223334556677777766665552 666666665543 345555555555555
Q ss_pred HHHCC
Q 006630 374 MIQRG 378 (638)
Q Consensus 374 m~~~~ 378 (638)
|..+|
T Consensus 94 la~sg 98 (115)
T TIGR02508 94 LAASG 98 (115)
T ss_pred HHhCC
Confidence 55554
No 382
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=62.75 E-value=1.1e+02 Score=29.24 Aligned_cols=87 Identities=15% Similarity=0.082 Sum_probs=39.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----
Q 006630 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK---- 430 (638)
Q Consensus 355 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 430 (638)
|.+++..|++.+++...-+..+.--+.........|-.|.+.++.....++-..-.+..-.-+...|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4555555666665554444333211222333334444455555555555555544432111222234444444433
Q ss_pred -cCCHHHHHHHH
Q 006630 431 -LGELKEAVNVW 441 (638)
Q Consensus 431 -~g~~~~A~~~~ 441 (638)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 45666665554
No 383
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=62.50 E-value=16 Score=23.66 Aligned_cols=19 Identities=11% Similarity=0.305 Sum_probs=7.5
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 006630 499 SLLRAQKVEMAKDVWSCIV 517 (638)
Q Consensus 499 ~~~~~g~~~~A~~~~~~~~ 517 (638)
+|...|+.+.|++++++++
T Consensus 8 ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 8 AYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHcCChHHHHHHHHHHH
Confidence 3333344444444333333
No 384
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=61.91 E-value=23 Score=21.75 Aligned_cols=29 Identities=7% Similarity=-0.141 Sum_probs=15.8
Q ss_pred HHHHHHHHhhcCHHHHHHH--HHHHHHHHHh
Q 006630 564 AKLMRGLKKLYNRQIAAEI--TEKVRKMAAE 592 (638)
Q Consensus 564 ~~ll~~~~~~g~~~~A~~~--~~~~~~~~p~ 592 (638)
..+.-.+...|++++|+++ ++-+..++|+
T Consensus 5 y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3444555566677777766 3355555554
No 385
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=61.51 E-value=1.3e+02 Score=28.21 Aligned_cols=66 Identities=12% Similarity=0.193 Sum_probs=49.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 529 TIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 529 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
-.+-.++...|++-++++...+.+.. .|+ ...|-.-..+-...=+.++|+.-+.++++++|.-...
T Consensus 234 lNy~QC~L~~~e~yevleh~seiL~~--~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 234 LNYCQCLLKKEEYYEVLEHCSEILRH--HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 34455677789999999999998865 454 4456666666666668899999999999999975444
No 386
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=61.32 E-value=82 Score=25.10 Aligned_cols=80 Identities=15% Similarity=0.103 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 006630 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACS 546 (638)
Q Consensus 467 g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 546 (638)
-+.+||..+.+-+...+ .....+-.+-+..+...|+|++| +..-.. ...||...|-++ +-.+.|-.+++..
T Consensus 20 HcH~EA~tIa~wL~~~~---~~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~-~~~pdL~p~~AL--~a~klGL~~~~e~ 90 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEG---EMEEVVALIRLSSLMNRGDYQEA---LLLPQC-HCYPDLEPWAAL--CAWKLGLASALES 90 (116)
T ss_dssp T-HHHHHHHHHHHHHTT---TTHHHHHHHHHHHHHHTT-HHHH---HHHHTT-S--GGGHHHHHH--HHHHCT-HHHHHH
T ss_pred HHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHhhHHHHHH---HHhccc-CCCccHHHHHHH--HHHhhccHHHHHH
Confidence 35667777777666655 22333333344556677777777 111211 245677777555 3446777777777
Q ss_pred HHHHHHhCC
Q 006630 547 YCLDMMDAD 555 (638)
Q Consensus 547 ~~~~m~~~~ 555 (638)
.+.++-..|
T Consensus 91 ~l~rla~~g 99 (116)
T PF09477_consen 91 RLTRLASSG 99 (116)
T ss_dssp HHHHHCT-S
T ss_pred HHHHHHhCC
Confidence 666664433
No 387
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=60.62 E-value=59 Score=26.74 Aligned_cols=59 Identities=19% Similarity=0.350 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHH
Q 006630 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320 (638)
Q Consensus 261 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 320 (638)
|..+-++.+..-++.|++......+++|.+.+++..|.++|+-++.+ +.+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 34455666666777888888888899999999999999998887654 333333455444
No 388
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=60.09 E-value=29 Score=24.52 Aligned_cols=29 Identities=14% Similarity=0.245 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQ 376 (638)
Q Consensus 348 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (638)
-.-.-.+|.+|.+.|++++|.+++.++.+
T Consensus 23 ~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 23 FLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33334456666666666666666666544
No 389
>PRK10941 hypothetical protein; Provisional
Probab=59.97 E-value=1.3e+02 Score=28.78 Aligned_cols=75 Identities=8% Similarity=-0.018 Sum_probs=48.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHH
Q 006630 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498 (638)
Q Consensus 422 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~ 498 (638)
+.+-..|.+.++++.|+++.+.+.... +.|..-+.--.-.|.+.|.+..|..-++..++.-.. .|+.......+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~-dp~a~~ik~ql~ 259 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE-DPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC-chhHHHHHHHHH
Confidence 344556777888888888888877764 445555665666677888888888877777765421 344444443333
No 390
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=59.61 E-value=22 Score=26.44 Aligned_cols=46 Identities=13% Similarity=0.208 Sum_probs=21.7
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHH
Q 006630 502 RAQKVEMAKDVWSCIVTKGCELN--VYAWTIWIHSLFSNGHVKEACSY 547 (638)
Q Consensus 502 ~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~ 547 (638)
...+.++|+..|..+++.-..|. -.++..++.+|+..|++++++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555554421111 12334445555555555555554
No 391
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=58.94 E-value=20 Score=20.57 Aligned_cols=29 Identities=17% Similarity=0.367 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 006630 223 SSVKEAAKLFDEMRERFKPSLRHFTSLLY 251 (638)
Q Consensus 223 g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 251 (638)
|+.+.|..+|+++....+.+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 34566666666666555556666655543
No 392
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=58.27 E-value=1.9e+02 Score=28.51 Aligned_cols=59 Identities=10% Similarity=0.035 Sum_probs=32.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCCCcHHHHH--HHHHHHHHcCCHHHHHHHHHHHHH
Q 006630 460 VHGFLGQGCLIEACEYFKEMVGRGL-LSAPQYGTLK--ALLNSLLRAQKVEMAKDVWSCIVT 518 (638)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~m~~~~~-~~~p~~~~~~--~ll~~~~~~g~~~~A~~~~~~~~~ 518 (638)
+....+.++.++|+++++++.+.-. ...|+...|. ...+.+...|++.++++.++...+
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3444455667777777777765311 1134444332 234445566777777777666655
No 393
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=57.50 E-value=1.8e+02 Score=27.79 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=15.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHH
Q 006630 312 NANSYTVLIQALCRMEKMEEANRAFV 337 (638)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~ 337 (638)
|......+...|.+.|++.+|+..|-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 45556666666777777666665553
No 394
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=56.69 E-value=3.2e+02 Score=30.49 Aligned_cols=412 Identities=12% Similarity=0.046 Sum_probs=196.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHhchhCCCCCCHHH
Q 006630 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFA---SARMVKKAIEVLDEMPKYGCEPDEFV 211 (638)
Q Consensus 135 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~---~~~~~~~A~~~~~~m~~~g~~~~~~~ 211 (638)
.-+...+..||..+.+.|++++....-..|....|. ++..|...+.... ..+....+..+|++.+..- .++..
T Consensus 110 ~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl--~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy--~~v~i 185 (881)
T KOG0128|consen 110 SYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPL--PPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY--NSVPI 185 (881)
T ss_pred ccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc--ccchH
Confidence 345667888999999999998877777777776654 6666665555443 3467778888888876543 33333
Q ss_pred HHHHHHHH-------HhCCCHHHHHHHHHHHhcc----CCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006630 212 FGCLLDAL-------CKNSSVKEAAKLFDEMRER----FKPSLRHFTSLL---YGWCKEGKLVEAKYVLVQMKDAGFEPD 277 (638)
Q Consensus 212 ~~~li~~~-------~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~ 277 (638)
|.-.+..+ -+.++++....+|.+.... ...-...|.... ..|..+-..++...+|..-...+ .|
T Consensus 186 w~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~--~D 263 (881)
T KOG0128|consen 186 WEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP--LD 263 (881)
T ss_pred HHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc--ch
Confidence 33333322 2346777888888876542 122223333333 23444444456666666655543 22
Q ss_pred HHHHHHHHHHHHH-------cCCHhHHHHHH-------HHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006630 278 IVVYNNLLSGYAQ-------MGKMTDAFELL-------KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343 (638)
Q Consensus 278 ~~~~~~ll~~~~~-------~g~~~~a~~~~-------~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 343 (638)
..+-+.-+.--.+ ..+.+.+.+-+ +..... ..+-...|..+|+...+.|+.-.....++++...-
T Consensus 264 ~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~ 342 (881)
T KOG0128|consen 264 EDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEM 342 (881)
T ss_pred hhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhc
Confidence 2222111111111 11222222221 111111 12233445556666666666655555555554321
Q ss_pred CCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHH
Q 006630 344 CEADVVTYTT---LISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEEL-EECVELMGEMRKIGCVPDVS 419 (638)
Q Consensus 344 ~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~ 419 (638)
..+...|.. ..+.= .+-.+.+.. .+..-+..|...|++ ..+. ...+.+-.+...
T Consensus 343 -~~~~~~wi~y~~~~d~e--Lkv~~~~~~---------------~~~ra~R~cp~tgdL~~ral----lAleR~re~~~v 400 (881)
T KOG0128|consen 343 -VLDRALWIGYGVYLDTE--LKVPQRGVS---------------VHPRAVRSCPWTGDLWKRAL----LALERNREEITV 400 (881)
T ss_pred -cccHHHHhhhhhhcccc--ccccccccc---------------ccchhhcCCchHHHHHHHHH----HHHHhcCcchhh
Confidence 112222211 00000 000011111 111111112111111 1111 111111133333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHH
Q 006630 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499 (638)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~ 499 (638)
++..+-..+.. -+..+...+......+-..+...|..|-.+ +..|...|.+...... .+...+.......
T Consensus 401 I~~~l~~~ls~--~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~------F~~A~~eLt~~~~~~~--Dt~~~~~q~wA~~ 470 (881)
T KOG0128|consen 401 IVQNLEKDLSM--TVELHNDYLAYRRRCTNIIDSQDYSSLRAA------FNHAWEELTELYGDQL--DTRTEVLQLWAQV 470 (881)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHhhcccchhhhHHHHHHH------HHHHHHHHHHHhhhhh--hhHHHHHHHHHHH
Confidence 33222222211 011222222222222212233344443333 4567777766655422 2433333333332
Q ss_pred -HHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhhcC
Q 006630 500 -LLRAQKVEMAKDVWSCIVTKGCELNVY-AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPD--TFAKLMRGLKKLYN 575 (638)
Q Consensus 500 -~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~g~ 575 (638)
+.-+++++.|+.+|+.+...|.. +.. .|-..++.-...|+...+..+++.....-..|+.. ++..+...-...|.
T Consensus 471 E~sl~~nmd~~R~iWn~imty~~~-~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gt 549 (881)
T KOG0128|consen 471 EASLLKNMDKAREIWNFIMTYGGG-SIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGT 549 (881)
T ss_pred HHHHhhchhhhhHhhhccccCCcc-hHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhcccc
Confidence 23568899999999999887533 333 66666666677899999999888887766666532 33344444455577
Q ss_pred HHHHHHHHHHH
Q 006630 576 RQIAAEITEKV 586 (638)
Q Consensus 576 ~~~A~~~~~~~ 586 (638)
++......++.
T Consensus 550 l~~~~~~~~~~ 560 (881)
T KOG0128|consen 550 LESFDLCPEKV 560 (881)
T ss_pred HHHHhhhHHhh
Confidence 77665554433
No 395
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=55.75 E-value=94 Score=24.04 Aligned_cols=23 Identities=17% Similarity=0.053 Sum_probs=15.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHh
Q 006630 531 WIHSLFSNGHVKEACSYCLDMMD 553 (638)
Q Consensus 531 li~~~~~~g~~~~A~~~~~~m~~ 553 (638)
+.......|++++|+..+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 44556667888888877777664
No 396
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=55.57 E-value=12 Score=30.90 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=23.0
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006630 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462 (638)
Q Consensus 429 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 462 (638)
-+.|.-.+|..+|.+|.+.|-+|| .|+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 344666778888888888887777 57776654
No 397
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=55.12 E-value=72 Score=26.24 Aligned_cols=40 Identities=15% Similarity=0.315 Sum_probs=21.9
Q ss_pred chhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccC
Q 006630 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF 239 (638)
Q Consensus 200 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 239 (638)
+....+-|++.+...-+.++-+-+++..|.++|+.++.+.
T Consensus 75 l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~ 114 (149)
T KOG4077|consen 75 LFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC 114 (149)
T ss_pred hhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 3334445555555555555555556666666655555443
No 398
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=55.08 E-value=1.1e+02 Score=25.98 Aligned_cols=82 Identities=13% Similarity=0.323 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCC----CCCHHHHHHHHHHHHhcCC-HHHHHHHHHhchhCCCCCCHHHHHHH
Q 006630 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQ----LITTEVFVILMRRFASARM-VKKAIEVLDEMPKYGCEPDEFVFGCL 215 (638)
Q Consensus 141 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~----~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~g~~~~~~~~~~l 215 (638)
.|.++.-++..+.+...+.+++.+....+. ..+...|..++.+...... ---+..+|..+.+.+.+.++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 455555555555555555555555332221 2344567777777755444 34556677777766667777777777
Q ss_pred HHHHHhC
Q 006630 216 LDALCKN 222 (638)
Q Consensus 216 i~~~~~~ 222 (638)
|.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7776554
No 399
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=54.72 E-value=35 Score=24.07 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=11.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHH
Q 006630 530 IWIHSLFSNGHVKEACSYCLDMM 552 (638)
Q Consensus 530 ~li~~~~~~g~~~~A~~~~~~m~ 552 (638)
.+|.+|...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455555555555555554443
No 400
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=54.29 E-value=2.7e+02 Score=28.95 Aligned_cols=41 Identities=12% Similarity=0.198 Sum_probs=30.8
Q ss_pred HcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH
Q 006630 290 QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKME 330 (638)
Q Consensus 290 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 330 (638)
..+.++...+++..+...|.....+.++.-+..|.+.|...
T Consensus 29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq 69 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQ 69 (696)
T ss_pred CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccch
Confidence 34678888888888888877766667777777888877643
No 401
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=53.75 E-value=2.3e+02 Score=28.92 Aligned_cols=58 Identities=16% Similarity=0.206 Sum_probs=42.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHh--cCCHHHHHHHHHHHHhCC
Q 006630 425 IRLACKLGELKEAVNVWNEMEAASLSPGTD--SFVVMVHGFLG--QGCLIEACEYFKEMVGRG 483 (638)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~--~g~~~~A~~~~~~m~~~~ 483 (638)
+.-+.+.+++..|.++|+.+... ++++.. .+..+..+|.. .-++++|.+.++......
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~ 199 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD 199 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 33455789999999999999887 555554 45556666654 667888999988877653
No 402
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.07 E-value=69 Score=25.71 Aligned_cols=27 Identities=15% Similarity=0.300 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 350 TYTTLISGFCKSRKIDRCYEILDSMIQ 376 (638)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (638)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477888888888888888888888776
No 403
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=52.06 E-value=2.8e+02 Score=28.45 Aligned_cols=402 Identities=11% Similarity=0.008 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 006630 213 GCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG 292 (638)
Q Consensus 213 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 292 (638)
.++|+-|...|++.-|..-+.++-.....--.+-..+-.+.-+..+-.+...++-...-..+......+...+......+
T Consensus 54 ~sii~eyfstgdv~vaa~dl~elg~seyhpyfvkrlvsmamdrhdkekemasvlls~lyadvi~p~qir~gf~~ll~s~d 133 (645)
T KOG0403|consen 54 VSIIDEYFSTGDVVVAASDLKELGSSEYHPYFVKRLVSMAMDRHDKEKEMASVLLSALYADVIDPDQIRDGFIRLLESAD 133 (645)
T ss_pred HHHHHHHccCCCchhhHHHHHHhccccccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhcc
Q ss_pred ----CHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH------------------
Q 006630 293 ----KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVT------------------ 350 (638)
Q Consensus 293 ----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~------------------ 350 (638)
++..|..++.-.+.+.+..+.-.-..|.++---.-+-.+..++.......-...+...
T Consensus 134 dl~vdipdavnvlalfiaraivddilpp~fl~r~~k~lp~~skg~qV~~~aeksylsap~hae~ve~~wGg~~n~t~EEv 213 (645)
T KOG0403|consen 134 DLAVDIPDAVNVLALFIARAIVDDILPPAFLKRAKKLLPDSSKGFQVINTAEKSYLSAPHHAELVELFWGGETNATVEEV 213 (645)
T ss_pred cceecCchHHHHHHHHHHHHHHHhccChHHHHHHHhhCCCcccchhHHHHHHhhccCCCchhhHHHhhhCCCccccHHHH
Q ss_pred ---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006630 351 ---YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427 (638)
Q Consensus 351 ---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 427 (638)
.|-++.-|...|+..+|.+..+++.. +...-...-+++...+.-..+..+.-...+.+...+...-+.+..+
T Consensus 214 K~kIn~~l~eyv~~getrea~rciR~L~v-----sffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kG 288 (645)
T KOG0403|consen 214 KNKINGNLIEYVEIGETREACRCIRELGV-----SFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKG 288 (645)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhCC-----CchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccC
Q ss_pred HHHcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHH
Q 006630 428 ACKLG--------ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499 (638)
Q Consensus 428 ~~~~g--------~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~ 499 (638)
+.+.+ +...|...|+.+.-+...-+-.--+++-..-...|+.+....+=+.+. .+|+-
T Consensus 289 fsr~~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~~r~Fkk~~~--------------~IIqE 354 (645)
T KOG0403|consen 289 FSRKGGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSENLRAFKKDLT--------------PIIQE 354 (645)
T ss_pred chhhccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchHHHHHHHhhH--------------HHHHH
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhhc-CH
Q 006630 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT--FAKLMRGLKKLY-NR 576 (638)
Q Consensus 500 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~g-~~ 576 (638)
|...|+..+..+.++.+-.-...|-...+-.-+..-.++..-+-|..++..+--.-+.+..+. |..|+...-... |.
T Consensus 355 YFlsgDt~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e~fsteDv~~~F~mLLesaedtALD~ 434 (645)
T KOG0403|consen 355 YFLSGDTPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGEVFSTEDVEKGFDMLLESAEDTALDI 434 (645)
T ss_pred HHhcCChHHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcchhhhccc
Q ss_pred HHHHHHHHHHHHHHHhccccc-----chhhhhhhhhhHHHHHhhhhhhhh-hhhhhh----ccCCcc
Q 006630 577 QIAAEITEKVRKMAAERQITF-----KMYKRRGERDLKEKAKKQVDGRKR-RARQRR----WGGGRS 633 (638)
Q Consensus 577 ~~A~~~~~~~~~~~p~~~~~~-----~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~----~~~~~~ 633 (638)
..|-+.+...+...--+..+. ++....--...+.+..++....-. |+...| |||||+
T Consensus 435 p~a~~elalFlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~ 501 (645)
T KOG0403|consen 435 PRASQELALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGG 501 (645)
T ss_pred cccHHHHHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCC
No 404
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=51.80 E-value=2.1e+02 Score=26.86 Aligned_cols=73 Identities=12% Similarity=0.029 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHh---CCCCCCHHHHHHHHH-----HHHhhcCHHHHHHHHHHHHHHHHhcccccchhhhhhhhhhHHHHH
Q 006630 542 KEACSYCLDMMD---ADVMPQPDTFAKLMR-----GLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKAK 613 (638)
Q Consensus 542 ~~A~~~~~~m~~---~~~~p~~~t~~~ll~-----~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~y~~~g~~~~A~~~~ 613 (638)
+.|.+.|+++.+ ..+.|...++..|+- .|-..|+.++|.++.++++...-.....+ ....+.++..+.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l----~e~~~~d~~~il 218 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTL----SEESYKDSTLIL 218 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGS----HTTTHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhccc----chhhhHHHHHHH
Confidence 556666666543 225665544433332 23456999999999999987654433322 123355565555
Q ss_pred hhhhh
Q 006630 614 KQVDG 618 (638)
Q Consensus 614 ~~~~~ 618 (638)
+.+++
T Consensus 219 qlLrd 223 (236)
T PF00244_consen 219 QLLRD 223 (236)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 405
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=51.53 E-value=2.1e+02 Score=26.77 Aligned_cols=84 Identities=12% Similarity=0.060 Sum_probs=44.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHH
Q 006630 393 HEKKEELEECVELMGEMRKIGCVPDVSN-YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD-SFVVMVHGFLGQGCLI 470 (638)
Q Consensus 393 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~ 470 (638)
|.....++.|...|.+.+.. .|+..+ |+.=+-++.+..+++.+..--....+. .||.+ ....+..++.....++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 44455566666655555543 344433 334444556666666665555555443 34432 2333444555556666
Q ss_pred HHHHHHHHHH
Q 006630 471 EACEYFKEMV 480 (638)
Q Consensus 471 ~A~~~~~~m~ 480 (638)
+|+..+.+..
T Consensus 96 eaI~~Lqra~ 105 (284)
T KOG4642|consen 96 EAIKVLQRAY 105 (284)
T ss_pred HHHHHHHHHH
Confidence 6666666653
No 406
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=51.03 E-value=67 Score=28.95 Aligned_cols=34 Identities=12% Similarity=0.036 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006630 521 CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554 (638)
Q Consensus 521 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 554 (638)
..|+...|..++.++...|+.++|.+..+++...
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3678888888888888888888888887777643
No 407
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=50.40 E-value=1.9e+02 Score=29.41 Aligned_cols=57 Identities=9% Similarity=-0.003 Sum_probs=42.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHH--cCCHHHHHHHHHHHHHC
Q 006630 390 MLAHEKKEELEECVELMGEMRKIGCVPDVS--NYNVVIRLACK--LGELKEAVNVWNEMEAA 447 (638)
Q Consensus 390 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~--~g~~~~A~~~~~~m~~~ 447 (638)
+..+...+++..|.+++..+.+. ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33456889999999999999886 555554 45555566653 66788999999988765
No 408
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=49.07 E-value=3.5e+02 Score=29.89 Aligned_cols=28 Identities=14% Similarity=-0.052 Sum_probs=21.6
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 569 GLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 569 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
+-.-.+|+.+|.++.+.++|+.|-...+
T Consensus 375 asVLAnd~~kaiqAae~mfKLk~P~WYL 402 (1226)
T KOG4279|consen 375 ASVLANDYQKAIQAAEMMFKLKPPVWYL 402 (1226)
T ss_pred hhhhccCHHHHHHHHHHHhccCCceehH
Confidence 3344579999999999999998876554
No 409
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=48.51 E-value=1.1e+02 Score=22.81 Aligned_cols=53 Identities=4% Similarity=-0.044 Sum_probs=36.6
Q ss_pred ccCCHHHHHHHHHHHHhCCCCC-C-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 006630 537 SNGHVKEACSYCLDMMDADVMP-Q-PDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589 (638)
Q Consensus 537 ~~g~~~~A~~~~~~m~~~~~~p-~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 589 (638)
...+.++|+..|...++.-..| + ..++..++.+++..|++++..++.-.=+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888999988887643222 2 245677778888888888887776544443
No 410
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.32 E-value=3.7e+02 Score=28.71 Aligned_cols=52 Identities=6% Similarity=-0.119 Sum_probs=24.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-ccCCHHHHHHHHHHH
Q 006630 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF-SNGHVKEACSYCLDM 551 (638)
Q Consensus 500 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m 551 (638)
+.+.|-+..|.++-+.+.+....-|+.....+|+.|+ ++.+++--+++++..
T Consensus 352 l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 352 LAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3445555555555554444432223444444444443 344455555544443
No 411
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=47.99 E-value=74 Score=21.02 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=15.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006630 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285 (638)
Q Consensus 255 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 285 (638)
+.|-..++..++++|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444445555555555555554444444443
No 412
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=47.86 E-value=67 Score=21.83 Aligned_cols=33 Identities=18% Similarity=0.359 Sum_probs=17.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006630 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKL 566 (638)
Q Consensus 532 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 566 (638)
.-++.+.|++++|.++.+.+++. +|+..-...|
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L 40 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSL 40 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHH
Confidence 34556666666666666666643 5554443333
No 413
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=46.57 E-value=1.5e+02 Score=26.38 Aligned_cols=47 Identities=13% Similarity=0.170 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhccCCCCHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 225 VKEAAKLFDEMRERFKPSLR--------HFTSLLYGWCKEGKLVEAKYVLVQMKD 271 (638)
Q Consensus 225 ~~~A~~~~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~ 271 (638)
++.|+.+++.+.+..++... .-...+..|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 45666666666554332210 112234456666666666666666654
No 414
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=46.32 E-value=46 Score=29.41 Aligned_cols=47 Identities=17% Similarity=0.032 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHcCCCCCH--HHH-----HHHHHHHHccCCHHHHHHHHHHHH
Q 006630 506 VEMAKDVWSCIVTKGCELNV--YAW-----TIWIHSLFSNGHVKEACSYCLDMM 552 (638)
Q Consensus 506 ~~~A~~~~~~~~~~~~~p~~--~~~-----~~li~~~~~~g~~~~A~~~~~~m~ 552 (638)
++.|..+|+.+.+.-..|.. ..- -..+-.|.+.|.+++|.+++++..
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHh
Confidence 56677777766554222211 111 122334556666666666666554
No 415
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=46.09 E-value=1.3e+02 Score=23.10 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 006630 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRF 184 (638)
Q Consensus 137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 184 (638)
|...--.+...+...|++++|++.+-++.+.++..-+...-..++..+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f 68 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIF 68 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHH
Confidence 455555666667777777777777766666654433333333343333
No 416
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=45.81 E-value=2.3e+02 Score=25.52 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=29.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHH-HHHhcCC--HHHHHHHHHHHHhCCC
Q 006630 427 LACKLGELKEAVNVWNEMEAAS--LSPGTDSFVVMVH-GFLGQGC--LIEACEYFKEMVGRGL 484 (638)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~-~~~~~g~--~~~A~~~~~~m~~~~~ 484 (638)
.....|++++|.+-++++.+.- ++.-...|..+.. +++.++. +-+|.-++.-......
T Consensus 38 ~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ 100 (204)
T COG2178 38 FLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRL 100 (204)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCC
Confidence 3455677777777776664320 0111123444443 4555443 5566666665555543
No 417
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=45.26 E-value=1.5e+02 Score=31.97 Aligned_cols=49 Identities=4% Similarity=0.131 Sum_probs=24.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCH
Q 006630 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506 (638)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~ 506 (638)
+|..+|..+|++..+.++++.+....-....-...++..++...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 5666666666666666666666554311111122344445555555543
No 418
>PF13934 ELYS: Nuclear pore complex assembly
Probab=45.20 E-value=2.6e+02 Score=26.03 Aligned_cols=106 Identities=17% Similarity=0.141 Sum_probs=59.2
Q ss_pred HHHHHHHHHH--hcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 006630 140 VYRALIKSLS--KMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217 (638)
Q Consensus 140 ~~~~li~~~~--~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 217 (638)
-|..++++|. ..+++++|.+++-. |. ..+..-..++..+...|+.+.|+.+++.+.-. ..+......++.
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~-----ps-~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~ 149 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSH-----PS-LIPWFPDKILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFV 149 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCC-----CC-CCcccHHHHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHH
Confidence 3445666655 34667777776632 21 11222234777777788888888888775432 122333344444
Q ss_pred HHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc
Q 006630 218 ALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKE 256 (638)
Q Consensus 218 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 256 (638)
. ..++.+.+|..+-+...+.. ....+..++..+...
T Consensus 150 ~-La~~~v~EAf~~~R~~~~~~--~~~l~e~l~~~~~~~ 185 (226)
T PF13934_consen 150 A-LANGLVTEAFSFQRSYPDEL--RRRLFEQLLEHCLEE 185 (226)
T ss_pred H-HHcCCHHHHHHHHHhCchhh--hHHHHHHHHHHHHHH
Confidence 4 55678888877666554321 134566666655543
No 419
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=45.07 E-value=2e+02 Score=24.59 Aligned_cols=79 Identities=10% Similarity=0.146 Sum_probs=40.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhcc------CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006630 212 FGCLLDALCKNSSVKEAAKLFDEMRER------FKPSLRHFTSLLYGWCKEGK-LVEAKYVLVQMKDAGFEPDIVVYNNL 284 (638)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l 284 (638)
.|+++.-....+.+.....+++.+..- ...+..+|.+++.+..+..- ---+..+|.-|.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 345555445555555555555444211 11233445555555544444 22345566666665566666666666
Q ss_pred HHHHHH
Q 006630 285 LSGYAQ 290 (638)
Q Consensus 285 l~~~~~ 290 (638)
+.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 665544
No 420
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.01 E-value=2.8e+02 Score=26.35 Aligned_cols=49 Identities=16% Similarity=0.093 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHhccC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 222 NSSVKEAAKLFDEMRERF----KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMK 270 (638)
Q Consensus 222 ~g~~~~A~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 270 (638)
....++|+.-|.++.+-. .---.+.--++..+.+.|++++..+.+.+|.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 456777777777765421 1112233445666666677766666666664
No 421
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=44.87 E-value=1.6e+02 Score=23.54 Aligned_cols=80 Identities=20% Similarity=0.162 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006630 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLV 267 (638)
Q Consensus 188 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 267 (638)
...++|..+.+.+...+. ....+--.-+..+.+.|++++| +..-.....||...|-+|-.+ +.|-.+++...+.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~ 93 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQCHCYPDLEPWAALCAW--KLGLASALESRLT 93 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHTTS--GGGHHHHHHHHH--HCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhcccCCCccHHHHHHHHHH--hhccHHHHHHHHH
Confidence 345666666666555432 2222333334445566666666 222223345566666555433 5566666666666
Q ss_pred HHHHCC
Q 006630 268 QMKDAG 273 (638)
Q Consensus 268 ~m~~~g 273 (638)
++-..|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 555444
No 422
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=44.68 E-value=89 Score=28.81 Aligned_cols=86 Identities=15% Similarity=0.131 Sum_probs=51.1
Q ss_pred ccCCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc-------ccc-------
Q 006630 537 SNGHVKEACSYCLDMMD----ADVMPQ--PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAER-------QIT------- 596 (638)
Q Consensus 537 ~~g~~~~A~~~~~~m~~----~~~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~------- 596 (638)
..-.+++|++.|.-++- .+..|. ...+..+...|...|+.+....+++++++.-.+. ...
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 33455555555443321 222333 3456677778888888666666666555433221 111
Q ss_pred c---chhhhhhhhhhHHHHHhhhhhhhhh
Q 006630 597 F---KMYKRRGERDLKEKAKKQVDGRKRR 622 (638)
Q Consensus 597 ~---~~y~~~g~~~~A~~~~~~~~~~~~~ 622 (638)
+ .++.+.|++++|.+.|.++....+.
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 1 6789999999999999996655543
No 423
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=44.31 E-value=3.3e+02 Score=26.93 Aligned_cols=122 Identities=10% Similarity=0.008 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 006630 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR------AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542 (638)
Q Consensus 469 ~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~------~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 542 (638)
.+++..++++....+ .|....+...|.+|-. .-++..-..+|+.+......| +++.|--+ +....--.+
T Consensus 272 I~eg~all~rA~~~~---~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSP-vV~LNRAV-Ala~~~Gp~ 346 (415)
T COG4941 272 IDEGLALLDRALASR---RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSP-VVTLNRAV-ALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHcC---CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCC-eEeehHHH-HHHHhhhHH
Confidence 456666666666666 3666666665555431 234455555666555543222 22233222 223333355
Q ss_pred HHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccc
Q 006630 543 EACSYCLDMMDAD-VMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595 (638)
Q Consensus 543 ~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 595 (638)
.++...+.+.+.+ +.--...+..-.+.+.+.|..++|...|++++.+.++...
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 5666655554432 1112223344455667788888888888888887765444
No 424
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=43.93 E-value=5.3e+02 Score=29.23 Aligned_cols=227 Identities=12% Similarity=0.005 Sum_probs=117.6
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCCHH-------hHHHHHH-HHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHH
Q 006630 289 AQMGKMTDAFELLKEMRRKGCDPNAN-------SYTVLIQ-ALCRMEKMEEANRAFVEMERS----GCEADVVTYTTLIS 356 (638)
Q Consensus 289 ~~~g~~~~a~~~~~~~~~~g~~~~~~-------~~~~li~-~~~~~g~~~~A~~~~~~m~~~----g~~~~~~~~~~li~ 356 (638)
....++++|..+..++...-..|+.. .++.|-. .....|+++.|.++-+..... -..+..+.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45678899999888876652222221 2333322 223458888888887776543 22334566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---H--HHHHHhcCCHHH--HHHHHHHHHHCC---C---CCCHHHHHH
Q 006630 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLH---I--MLAHEKKEELEE--CVELMGEMRKIG---C---VPDVSNYNV 423 (638)
Q Consensus 357 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~---l--l~~~~~~g~~~~--a~~~~~~~~~~~---~---~~~~~~~~~ 423 (638)
+..-.|++++|..+..+..+..-.-+...+.. + ...+...|+... ....+....... . .+-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 88888999999988877665422223332222 2 223455663322 222333332210 0 112234444
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CCcHHHHHHHHH
Q 006630 424 VIRLACKL-GELKEAVNVWNEMEAASLSPGTDSF--VVMVHGFLGQGCLIEACEYFKEMVGRGLLS--APQYGTLKALLN 498 (638)
Q Consensus 424 li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~p~~~~~~~ll~ 498 (638)
+..++.+. +...++..-+.--......|-...+ ..|+..+...|++++|.....++....... .++..+-...++
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 45555441 1222222222222222212222222 256777888999999999888887643321 233333333333
Q ss_pred HH--HHcCCHHHHHHHHHH
Q 006630 499 SL--LRAQKVEMAKDVWSC 515 (638)
Q Consensus 499 ~~--~~~g~~~~A~~~~~~ 515 (638)
.. ...|+.+.+.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 22 356777777666554
No 425
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=42.89 E-value=1.5e+02 Score=23.75 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006630 455 SFVVMVHGFLGQGCLIEACEYFKEMVG 481 (638)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (638)
-|..|+..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 678888888888888888888888776
No 426
>PHA02875 ankyrin repeat protein; Provisional
Probab=42.89 E-value=3.9e+02 Score=27.43 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=11.1
Q ss_pred HHHHHHhCCCHHHHHHHHH
Q 006630 215 LLDALCKNSSVKEAAKLFD 233 (638)
Q Consensus 215 li~~~~~~g~~~~A~~~~~ 233 (638)
.+...+..|+.+.+..+++
T Consensus 71 ~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 71 ELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHHCCCHHHHHHHHH
Confidence 3444556677766655554
No 427
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=42.67 E-value=2.9e+02 Score=25.88 Aligned_cols=19 Identities=21% Similarity=-0.046 Sum_probs=8.3
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 006630 251 YGWCKEGKLVEAKYVLVQM 269 (638)
Q Consensus 251 ~~~~~~g~~~~A~~~~~~m 269 (638)
.+......+++|+..+.+.
T Consensus 86 ~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 86 QWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHHHhhccccHHHHHHHHH
Confidence 3334444444444444443
No 428
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=42.41 E-value=2.5e+02 Score=29.71 Aligned_cols=59 Identities=20% Similarity=0.255 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006630 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF---VVMVHGFLGQGCLIEACEYFKEMVGR 482 (638)
Q Consensus 422 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~ 482 (638)
..++.-|.+.+++++|..++..|.=.. . ....| +.+.+.+.+..--.+....++.++..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~-~-g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNT-M-GEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccc-c-HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 456778888888888888888875321 1 12233 33344444444444445555555544
No 429
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=42.02 E-value=5.8e+02 Score=29.20 Aligned_cols=52 Identities=8% Similarity=0.001 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCC
Q 006630 382 NQLTYLHIMLAHEKKEELEECVELMGEMRK-IGCVPDVSNYNVVIRLACKLGE 433 (638)
Q Consensus 382 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~ 433 (638)
|..++..-.......|++..+.+++.++.+ .+-.++...|..++..+...|-
T Consensus 1230 dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw 1282 (1304)
T KOG1114|consen 1230 DSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGW 1282 (1304)
T ss_pred CchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCc
Confidence 344444444444555666666666655544 2334555555555555555553
No 430
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=41.81 E-value=1.9e+02 Score=27.21 Aligned_cols=56 Identities=13% Similarity=0.106 Sum_probs=27.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHH
Q 006630 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK-SRKIDRCYEILDSM 374 (638)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m 374 (638)
++..+-.+|+++++...+.++...+...+..--|.|-.+|-. .|....+++.+..+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 444555566666666666666665545555555555554422 23333444444433
No 431
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=41.59 E-value=4.1e+02 Score=30.92 Aligned_cols=133 Identities=8% Similarity=0.066 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 006630 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQ--KVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544 (638)
Q Consensus 467 g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 544 (638)
++.....+.+.+.+... .....-+..++.+|.+.+ ++++|+....++.+. +.......+.-++- +-++
T Consensus 792 ~KVn~ICdair~~l~~~---~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~----~~~~ae~alkyl~f---LvDv 861 (928)
T PF04762_consen 792 SKVNKICDAIRKALEKP---KDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE----DPESAEEALKYLCF---LVDV 861 (928)
T ss_pred cHHHHHHHHHHHHhccc---ccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc----ChHHHHHHHhHhee---eccH
Confidence 44444444444444321 122334556777888877 788888887777654 11111111111111 1122
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccccchhhhhhhhhhHHHHHhh
Q 006630 545 CSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKAKKQ 615 (638)
Q Consensus 545 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~y~~~g~~~~A~~~~~~ 615 (638)
-++|+.++.. - |.. .+++-|-..+.|..+-.-+++++.++.|.. .-|.+=...|+|++|.+.+.+
T Consensus 862 n~Ly~~ALG~--Y-Dl~--Lal~VAq~SQkDPKEYLPfL~~L~~l~~~~-rry~ID~hLkRy~kAL~~L~~ 926 (928)
T PF04762_consen 862 NKLYDVALGT--Y-DLE--LALMVAQQSQKDPKEYLPFLQELQKLPPLY-RRYKIDDHLKRYEKALRHLSA 926 (928)
T ss_pred HHHHHHHhhh--c-CHH--HHHHHHHHhccChHHHHHHHHHHHhCChhh-eeeeHhhhhCCHHHHHHHHHh
Confidence 2233333210 0 000 123333344456666666666666665443 556777888999999887654
No 432
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=41.10 E-value=3e+02 Score=25.63 Aligned_cols=22 Identities=9% Similarity=0.110 Sum_probs=18.0
Q ss_pred hhcCHHHHHHHHHHHHHHHHhc
Q 006630 572 KLYNRQIAAEITEKVRKMAAER 593 (638)
Q Consensus 572 ~~g~~~~A~~~~~~~~~~~p~~ 593 (638)
..++.+.|...++++++++|+-
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCC
Confidence 3467789999999999998863
No 433
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=40.68 E-value=1.6e+02 Score=22.39 Aligned_cols=44 Identities=25% Similarity=0.239 Sum_probs=35.6
Q ss_pred HHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcc
Q 006630 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238 (638)
Q Consensus 195 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 238 (638)
++|+.....|+..|..+|..+++.+.-+=..+...++++.|..+
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 78888888888889999998888887777777778888887543
No 434
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.62 E-value=18 Score=35.20 Aligned_cols=87 Identities=14% Similarity=0.070 Sum_probs=45.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 006630 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT-DSFVVMVHGFLGQGCLIEAC 473 (638)
Q Consensus 395 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~ 473 (638)
..|.++.|++.+...++.+ ++....|.--.+.+.+.++...|++-++...+.+ ||. ..|-.-..+-...|++++|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHHH
Confidence 4455666666666665554 4444445444555666666666666666555432 332 12222222223356666666
Q ss_pred HHHHHHHhCCC
Q 006630 474 EYFKEMVGRGL 484 (638)
Q Consensus 474 ~~~~~m~~~~~ 484 (638)
+.|....+.+.
T Consensus 203 ~dl~~a~kld~ 213 (377)
T KOG1308|consen 203 HDLALACKLDY 213 (377)
T ss_pred HHHHHHHhccc
Confidence 66666666554
No 435
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=40.24 E-value=1.6e+02 Score=22.10 Aligned_cols=51 Identities=6% Similarity=-0.046 Sum_probs=36.6
Q ss_pred hhcCHHHHHHHHHHHHHHHHhccc-ccchhhhhhhhhhHHHHHhhhhhhhhh
Q 006630 572 KLYNRQIAAEITEKVRKMAAERQI-TFKMYKRRGERDLKEKAKKQVDGRKRR 622 (638)
Q Consensus 572 ~~g~~~~A~~~~~~~~~~~p~~~~-~~~~y~~~g~~~~A~~~~~~~~~~~~~ 622 (638)
..|+.+.|...|++.+..--+-.. ....+...-.|++|.++.++|..-...
T Consensus 20 E~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~ 71 (79)
T cd02679 20 EWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNM 71 (79)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 348889999999988876443221 122477888999999999998765543
No 436
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=39.99 E-value=64 Score=31.13 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006630 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282 (638)
Q Consensus 244 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 282 (638)
..|+..|....+.||+++|+.++++..+.|+.--..+|.
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 445677777777788888888887777777654444443
No 437
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=39.83 E-value=3.4e+02 Score=25.87 Aligned_cols=65 Identities=15% Similarity=0.188 Sum_probs=41.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCC-CCC-----CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcc
Q 006630 530 IWIHSLFSNGHVKEACSYCLDMMDAD-VMP-----QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQ 594 (638)
Q Consensus 530 ~li~~~~~~g~~~~A~~~~~~m~~~~-~~p-----~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 594 (638)
.+..-+.+.|+++.|..++--+...+ ... +...-..++......++++.+.++.+=+..++|++.
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ld~~~~ 254 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKALDPEGN 254 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcccC
Confidence 45566677788887777765554322 112 223344556666667888888888887777777654
No 438
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.77 E-value=4.6e+02 Score=27.39 Aligned_cols=161 Identities=14% Similarity=0.179 Sum_probs=84.2
Q ss_pred cCCHHHHHHHHHHHHHC-CCCCCH-------HHHHHHHHHH-HHcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHH
Q 006630 396 KEELEECVELMGEMRKI-GCVPDV-------SNYNVVIRLA-CKLGELKEAVNVWNEMEAASLSPGTDSF--VVMVHGFL 464 (638)
Q Consensus 396 ~g~~~~a~~~~~~~~~~-~~~~~~-------~~~~~li~~~-~~~g~~~~A~~~~~~m~~~~~~p~~~~~--~~li~~~~ 464 (638)
.|+..+|++-...|.+. .-.|.+ .....++..| +..|.++.|+.-|....+.--..|...+ ..+...|.
T Consensus 336 ~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL 415 (629)
T KOG2300|consen 336 RGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYL 415 (629)
T ss_pred hCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHH
Confidence 56777777666666542 112221 1122333333 3567788888888776654323333332 23455677
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCcHHHHHH--------HHHH--HHHcCCHHHHHHHHHHHHHcCCCCC-----HHHHH
Q 006630 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKA--------LLNS--LLRAQKVEMAKDVWSCIVTKGCELN-----VYAWT 529 (638)
Q Consensus 465 ~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~--------ll~~--~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~ 529 (638)
+.|+-+.-.++++.. + +++..++.+ ++.+ ....+++.+|..++.+.++..-.-| .-...
T Consensus 416 ~~~~~ed~y~~ld~i---~---p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~Lv 489 (629)
T KOG2300|consen 416 RIGDAEDLYKALDLI---G---PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLV 489 (629)
T ss_pred HhccHHHHHHHHHhc---C---CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Confidence 777766555555443 2 232222111 1111 2377899999999888776521111 11223
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh-CCCCCCHHH
Q 006630 530 IWIHSLFSNGHVKEACSYCLDMMD-ADVMPQPDT 562 (638)
Q Consensus 530 ~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~t 562 (638)
.+...+...|+..++.+...-..+ ....||..+
T Consensus 490 LLs~v~lslgn~~es~nmvrpamqlAkKi~Di~v 523 (629)
T KOG2300|consen 490 LLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPV 523 (629)
T ss_pred HHHHHHHHhcchHHHHhccchHHHHHhcCCCchH
Confidence 344555667888887776654433 233566544
No 439
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=39.68 E-value=4.4e+02 Score=27.07 Aligned_cols=106 Identities=12% Similarity=0.230 Sum_probs=67.4
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchh-------CCCCC-----CHHHHHHHHHHHHhCCCHHHHHHHH
Q 006630 165 RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK-------YGCEP-----DEFVFGCLLDALCKNSSVKEAAKLF 232 (638)
Q Consensus 165 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-------~g~~~-----~~~~~~~li~~~~~~g~~~~A~~~~ 232 (638)
...+|..|+......++.+++...++.+-++..+.... .|-.| .-++...|++.++-.|++..|++++
T Consensus 66 ~~~~~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l 145 (404)
T PF10255_consen 66 KENNPDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVL 145 (404)
T ss_pred HhhccCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHh
Confidence 44446778887777778888877777776665554211 11111 1134456777888889999999988
Q ss_pred HHHhcc-------C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 233 DEMRER-------F-KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMK 270 (638)
Q Consensus 233 ~~~~~~-------~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 270 (638)
+.+.-. . .-.+.++-.+.-+|.-.+++.+|.+.|....
T Consensus 146 ~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 146 ENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred hccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876321 1 1233445556667777788888888887765
No 440
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=39.47 E-value=2.3e+02 Score=28.11 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006630 507 EMAKDVWSCIVTKGCELN----VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK 571 (638)
Q Consensus 507 ~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 571 (638)
++...+++.+++. .|+ +..|-+++..+...|.+++.+.+|++++..|..|=...-..+++.+.
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4555566666654 344 45788999999999999999999999999998886666666666554
No 441
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=39.29 E-value=3.2e+02 Score=25.34 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=9.7
Q ss_pred HHHHHhcCCHHHHHHHHHhc
Q 006630 181 MRRFASARMVKKAIEVLDEM 200 (638)
Q Consensus 181 i~~~~~~~~~~~A~~~~~~m 200 (638)
|......|+.+.|++....+
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHHHhccHHHHHHHHHHh
Confidence 33444555555555554443
No 442
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=38.97 E-value=36 Score=32.73 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHH-HHHHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAK-LMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 524 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~-ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
|+..|...+.--.+.|.+.+.-.+|.+.++. .|+ ...|.. --.-+...++.+.++.++.+.+.++|++|..+
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~k--hP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw 179 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTK--HPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW 179 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence 4444444444334445555555555555543 232 222322 11123344566666666666666666666654
No 443
>PRK13342 recombination factor protein RarA; Reviewed
Probab=38.53 E-value=4.7e+02 Score=27.04 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=16.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006630 256 EGKLVEAKYVLVQMKDAGFEPDIVVYN 282 (638)
Q Consensus 256 ~g~~~~A~~~~~~m~~~g~~p~~~~~~ 282 (638)
..+.+.|+..+..|.+.|..|....-.
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rr 269 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARR 269 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 356666677777777666555443333
No 444
>PHA02875 ankyrin repeat protein; Provisional
Probab=38.07 E-value=2.5e+02 Score=28.85 Aligned_cols=213 Identities=10% Similarity=0.078 Sum_probs=102.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcC
Q 006630 322 ALCRMEKMEEANRAFVEMERSGCEADVVT--YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL--TYLHIMLAHEKKE 397 (638)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~g 397 (638)
..+..|+.+-+ +.+.+.|..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|
T Consensus 8 ~A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 8 DAILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 34456777654 44445677776533 233444556677765 445556667655432 1223445556778
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHH
Q 006630 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD---SFVVMVHGFLGQGCLIEACE 474 (638)
Q Consensus 398 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~ 474 (638)
+.+.+..+++.-....-..+... .+.+...+..|+.+ +++.+.+.|..|+.. -.+ .+...+..|+.+-.
T Consensus 80 ~~~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~t-pLh~A~~~~~~~~v-- 151 (413)
T PHA02875 80 DVKAVEELLDLGKFADDVFYKDG-MTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFS-PLHLAVMMGDIKGI-- 151 (413)
T ss_pred CHHHHHHHHHcCCcccccccCCC-CCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCC-HHHHHHHcCCHHHH--
Confidence 87766555543211100111111 22334445667664 444445555554432 222 33344556766543
Q ss_pred HHHHHHhCCCCC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHccCCHHHHHHHHHH
Q 006630 475 YFKEMVGRGLLS-APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYA---WTIWIHSLFSNGHVKEACSYCLD 550 (638)
Q Consensus 475 ~~~~m~~~~~~~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~ 550 (638)
+.+.+.|... ..+..-.+ .+...+..|+.+- .+.+++.|..++... ..+.+..-...|+.+ +.+-
T Consensus 152 --~~Ll~~g~~~~~~d~~g~T-pL~~A~~~g~~ei----v~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~ 220 (413)
T PHA02875 152 --ELLIDHKACLDIEDCCGCT-PLIIAMAKGDIAI----CKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRL 220 (413)
T ss_pred --HHHHhcCCCCCCCCCCCCC-HHHHHHHcCCHHH----HHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHH
Confidence 3444444311 11222222 2333445676653 444556666655432 123444345566655 3444
Q ss_pred HHhCCCCCCHH
Q 006630 551 MMDADVMPQPD 561 (638)
Q Consensus 551 m~~~~~~p~~~ 561 (638)
+++.|..++..
T Consensus 221 Ll~~gad~n~~ 231 (413)
T PHA02875 221 FIKRGADCNIM 231 (413)
T ss_pred HHHCCcCcchH
Confidence 56678777754
No 445
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=37.92 E-value=3.8e+02 Score=25.82 Aligned_cols=198 Identities=13% Similarity=0.094 Sum_probs=93.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHHcCCHhHHHHHHHH----HHHcCCCCCHHhHH
Q 006630 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV-------VYNNLLSGYAQMGKMTDAFELLKE----MRRKGCDPNANSYT 317 (638)
Q Consensus 249 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------~~~~ll~~~~~~g~~~~a~~~~~~----~~~~g~~~~~~~~~ 317 (638)
+.+-..+.+++++|...+.++...|+..|.. +...+...|...|+...--+.... |....-+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 3344556667777777777777666655543 334456667777765544433322 22111111233344
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHH----HHCCCCCCHHHHH
Q 006630 318 VLIQALCRM-EKMEEANRAFVEMERSGCEAD-----VVTYTTLISGFCKSRKIDRCYEILDSM----IQRGILPNQLTYL 387 (638)
Q Consensus 318 ~li~~~~~~-g~~~~A~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~p~~~t~~ 387 (638)
.|+..+-.. ..++.-+.+.....+...+.. ...-.-+|..+.+.|.+.+|+.+...+ .+..-+|+..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 455444322 334555555444433211111 111234677888999999998876544 3334455544433
Q ss_pred HHH-HHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHH
Q 006630 388 HIM-LAHEKKEELEECVELMGEMRK----IGCVPDVSNYNVVIRLA--CKLGELKEAVNVWNEMEA 446 (638)
Q Consensus 388 ~ll-~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~ 446 (638)
.+= .+|-...++.++..-+..... .-+||-...---|+.+. |...++.-|...|-+..+
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 221 233333444443333332221 12344333333334332 233345556555555443
No 446
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=37.92 E-value=33 Score=28.55 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=23.6
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006630 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570 (638)
Q Consensus 535 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 570 (638)
+...|.-.+|..+|++|++.|-.||. |..|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34456667788888888888877764 56666544
No 447
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=37.72 E-value=4.1e+02 Score=26.17 Aligned_cols=96 Identities=17% Similarity=0.193 Sum_probs=57.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCH----H
Q 006630 314 NSYTVLIQALCRMEKMEEANRAFVEMER----SGCEADVVTYTTLISG-FCKSRKIDRCYEILDSMIQRGILPNQ----L 384 (638)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~----~ 384 (638)
..+......||+-|+-+.|.+.+++..+ .|.+.|++.+.+-+.. |....-+.+-++..+.+.++|-..+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 3455566788999998888888776543 4667777766554433 33344455566666666666654332 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 385 TYLHIMLAHEKKEELEECVELMGEMRK 411 (638)
Q Consensus 385 t~~~ll~~~~~~g~~~~a~~~~~~~~~ 411 (638)
+|..+- |....++.+|-.+|-....
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 333322 3345677778777766553
No 448
>PRK13342 recombination factor protein RarA; Reviewed
Probab=37.40 E-value=4.8e+02 Score=26.92 Aligned_cols=42 Identities=24% Similarity=0.269 Sum_probs=25.6
Q ss_pred HHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006630 352 TTLISGFCK---SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393 (638)
Q Consensus 352 ~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 393 (638)
..+++++.+ ..+.+.|+.++..|.+.|..|....-..++.++
T Consensus 231 ~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 334444443 467888888888888877766554444444443
No 449
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=37.39 E-value=1.2e+02 Score=20.00 Aligned_cols=27 Identities=19% Similarity=0.124 Sum_probs=11.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006630 361 SRKIDRCYEILDSMIQRGILPNQLTYL 387 (638)
Q Consensus 361 ~g~~~~A~~~~~~m~~~~~~p~~~t~~ 387 (638)
.|-..++..++++|.+.|+..+...+.
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~ 41 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIE 41 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHH
Confidence 344444444444444444444444333
No 450
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=37.33 E-value=2.5e+02 Score=23.64 Aligned_cols=20 Identities=5% Similarity=0.187 Sum_probs=9.6
Q ss_pred HHHccCCHHHHHHHHHHHHh
Q 006630 534 SLFSNGHVKEACSYCLDMMD 553 (638)
Q Consensus 534 ~~~~~g~~~~A~~~~~~m~~ 553 (638)
++.+.|++++++++++.+++
T Consensus 80 g~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 80 GHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHhhHHHHHHHHHHHHh
Confidence 44444555555555444443
No 451
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=37.28 E-value=2e+02 Score=28.26 Aligned_cols=69 Identities=12% Similarity=0.045 Sum_probs=53.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 529 TIWIHSLFSNGHVKEACSYCLDMMDAD-VMPQ--PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 529 ~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
.-=.+-|.+..++..|...|.+-+... -.|| .+.|.+-..+-...||+..++.-..++++.+|.+.-++
T Consensus 85 KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~ 156 (390)
T KOG0551|consen 85 KEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAY 156 (390)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhh
Confidence 333566889999999999998877632 2343 45577766666778999999999999999999987764
No 452
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.50 E-value=70 Score=30.87 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=21.7
Q ss_pred CCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006630 311 PNANS-YTVLIQALCRMEKMEEANRAFVEMERSGCE 345 (638)
Q Consensus 311 ~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 345 (638)
||... |+.-|....+.||+++|+.++++..+.|+.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 44443 456666666667777777777776666643
No 453
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.17 E-value=90 Score=24.40 Aligned_cols=27 Identities=11% Similarity=0.018 Sum_probs=11.9
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 570 LKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 570 ~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
|...|+.+.|.+-++.-..+.|++...
T Consensus 82 ys~~G~~e~a~~eFetEKalFPES~~f 108 (121)
T COG4259 82 YSNSGKDEQAVREFETEKALFPESGVF 108 (121)
T ss_pred HhhcCChHHHHHHHHHhhhhCccchhH
Confidence 444444444444444444444444433
No 454
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=36.15 E-value=4.3e+02 Score=25.96 Aligned_cols=20 Identities=10% Similarity=-0.027 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhcccc
Q 006630 577 QIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 577 ~~A~~~~~~~~~~~p~~~~~ 596 (638)
..|.+...++++.+|.-|..
T Consensus 379 ~~AvEAihRAvEFNPHVPkY 398 (556)
T KOG3807|consen 379 INAVEAIHRAVEFNPHVPKY 398 (556)
T ss_pred HHHHHHHHHHhhcCCCCcHH
Confidence 44666777777777776655
No 455
>COG4715 Uncharacterized conserved protein [Function unknown]
Probab=35.98 E-value=5.7e+02 Score=27.28 Aligned_cols=116 Identities=10% Similarity=0.054 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHH
Q 006630 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV--PDVSNYNVVIRL 427 (638)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~ 427 (638)
.+.-.+.++...|...+++.+.++.... ...|..+...+...+....|...+-+-.+.+-+ ......-.+...
T Consensus 305 ~~~r~v~~l~~a~~~~e~i~~~~~ea~~-----~~~yl~~v~llle~~~~~~a~~wl~~~~r~a~~q~~t~q~~q~l~el 379 (587)
T COG4715 305 VVDREVPALASAGLQHEAIRLCEREAEG-----PGSYLDLVELLLESGEPSKAELWLARGIRTAREQLQTTQLPQTLAEL 379 (587)
T ss_pred HHHHhhhhhccchhhHHHHHHHHHHhcC-----cccHHHHHHHHHhcCChhHHHHHHHHHHhhhhHhhhhhhhHHHHHHH
Confidence 3444555566666666666665554431 123455555556666655555444333322211 122334556666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCCHHHH
Q 006630 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV--HGFLGQGCLIEA 472 (638)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li--~~~~~~g~~~~A 472 (638)
+...|++-.|.++-+..-.. .|+..+|.-|- ..+...|+.+..
T Consensus 380 ~~~~g~~~~a~~Laq~~F~r--~p~~~sy~~lw~~~~~~gi~~~e~~ 424 (587)
T COG4715 380 KEEEGRLGFAAELAQEAFFR--TPNGRSYLGLWLAAVYAGIGREERE 424 (587)
T ss_pred HHhhcchHHHHHHHHHHccC--CCCccchhhHHHHHHHhhhchHHHH
Confidence 77777777777766665544 45555555432 233444444433
No 456
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.59 E-value=8e+02 Score=28.93 Aligned_cols=181 Identities=14% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH-----------------------HHCCCCCCHHH-----HHHHHHHHHhcCCHHHHHH
Q 006630 423 VVIRLACKLGELKEAVNVWNEM-----------------------EAASLSPGTDS-----FVVMVHGFLGQGCLIEACE 474 (638)
Q Consensus 423 ~li~~~~~~g~~~~A~~~~~~m-----------------------~~~~~~p~~~~-----~~~li~~~~~~g~~~~A~~ 474 (638)
.+..+|..+|...+|+..|.+. ...|-.|...- |...+..+.+.+..+++++
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQ 1004 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQ 1004 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHH
Q ss_pred HHHHHHhCCCCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH------------
Q 006630 475 YFKEMVGRGLLSAPQ-YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHV------------ 541 (638)
Q Consensus 475 ~~~~m~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~------------ 541 (638)
+-..+++.-....|. ..+++.+.+.....|.+-+|...+-..... .........++-.++.+|.+
T Consensus 1005 lA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlvivLfecg~l~~L~~fpfigl~ 1082 (1480)
T KOG4521|consen 1005 LAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLVIVLFECGELEALATFPFIGLE 1082 (1480)
T ss_pred HHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHhccchHHHhhCCccchH
Q ss_pred HHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHH-HHHHHHHHHHHhcccccchhhhhhh
Q 006630 542 KEACS-YCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAA-EITEKVRKMAAERQITFKMYKRRGE 605 (638)
Q Consensus 542 ~~A~~-~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~-~~~~~~~~~~p~~~~~~~~y~~~g~ 605 (638)
++... +++..-+....-....|..|..-+...+|+.+|- -+|+.+..++.+....=..+.+.++
T Consensus 1083 ~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~se~~~~~~~Lekr~n 1148 (1480)
T KOG4521|consen 1083 QEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLESETCMTPELLEKRRN 1148 (1480)
T ss_pred HHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcccccCCHHHHHHhhh
No 457
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=35.02 E-value=3.8e+02 Score=25.04 Aligned_cols=38 Identities=21% Similarity=0.481 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH
Q 006630 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313 (638)
Q Consensus 275 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~ 313 (638)
.|.+.....++..|. .+++++|.+++.++-+.|+.|..
T Consensus 236 ~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred CCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH
Confidence 455666666665543 34677777777777777766543
No 458
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=34.56 E-value=4.2e+02 Score=25.31 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 006630 452 GTDSFVVMVHGFLGQGCLIEACEYF 476 (638)
Q Consensus 452 ~~~~~~~li~~~~~~g~~~~A~~~~ 476 (638)
|......+...|.+.|++.+|...|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4455666667777777777776555
No 459
>PRK09857 putative transposase; Provisional
Probab=34.56 E-value=2.8e+02 Score=27.03 Aligned_cols=60 Identities=15% Similarity=0.199 Sum_probs=24.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006630 215 LLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF 274 (638)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 274 (638)
++.-..+.++.++-.++++.+.+..+......-++..-+.+.|.-+++.++..+|...|+
T Consensus 212 ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~ 271 (292)
T PRK09857 212 LFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGV 271 (292)
T ss_pred HHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 333333444444444444444333222222223334444444444444444444444443
No 460
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.52 E-value=92 Score=34.69 Aligned_cols=128 Identities=13% Similarity=0.055 Sum_probs=75.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 006630 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537 (638)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 537 (638)
++|.-+.+.|.++-|+.+.+.= .+ -...+..+|+++.|.+.-.++ -+..+|..|+..-.+
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~-----------~t---RF~LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~ 684 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDE-----------RT---RFELALECGNLEVALEAAKKL------DDKDVWERLGEEALR 684 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCc-----------ch---heeeehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHH
Confidence 4555555666666666554321 11 122245778888887764433 267788888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccccchhhhhhhhhhHHHHHhh
Q 006630 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKAKKQ 615 (638)
Q Consensus 538 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~y~~~g~~~~A~~~~~~ 615 (638)
+|+.+-|...|++.. .|..|--.|.-.|+.++-.++...+...+ +-...+..-...|+.++-.++++.
T Consensus 685 qgn~~IaEm~yQ~~k---------nfekLsfLYliTgn~eKL~Km~~iae~r~-D~~~~~qnalYl~dv~ervkIl~n 752 (1202)
T KOG0292|consen 685 QGNHQIAEMCYQRTK---------NFEKLSFLYLITGNLEKLSKMMKIAEIRN-DATGQFQNALYLGDVKERVKILEN 752 (1202)
T ss_pred hcchHHHHHHHHHhh---------hhhheeEEEEEeCCHHHHHHHHHHHHhhh-hhHHHHHHHHHhccHHHHHHHHHh
Confidence 888888877777654 23344444556688887777665543322 222223333345777777776665
No 461
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=34.27 E-value=1.1e+02 Score=21.92 Aligned_cols=44 Identities=14% Similarity=0.174 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006630 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463 (638)
Q Consensus 419 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 463 (638)
..++.++..+++-.-.++++..+.+....| ..+..+|.--+..+
T Consensus 9 ~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~L 52 (65)
T PF09454_consen 9 PLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSL 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 344444444444444444444444444444 23334443333333
No 462
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=34.17 E-value=4.4e+02 Score=25.43 Aligned_cols=95 Identities=16% Similarity=0.303 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCCHhHHHHHHH----HHHHcCCCCCHHhHHHH-HHHHHhcCCHHHHHHHHHHHHH----cCCCCCHHHHH
Q 006630 282 NNLLSGYAQMGKMTDAFELLK----EMRRKGCDPNANSYTVL-IQALCRMEKMEEANRAFVEMER----SGCEADVVTYT 352 (638)
Q Consensus 282 ~~ll~~~~~~g~~~~a~~~~~----~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~----~g~~~~~~~~~ 352 (638)
..++..+.+.|.+.+|..+.. ++.+..-.|+..+...+ -..|-+..++.++..-+..... .-++|....--
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 346677778888888776654 33444444443332222 1234444444444443333221 12344443333
Q ss_pred HHHHH--HHhcCCHHHHHHHHHHHHH
Q 006630 353 TLISG--FCKSRKIDRCYEILDSMIQ 376 (638)
Q Consensus 353 ~li~~--~~~~g~~~~A~~~~~~m~~ 376 (638)
-|+++ .|...++.-|..+|-+..+
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHh
Confidence 34443 2344566677777766655
No 463
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=33.79 E-value=1.8e+02 Score=27.43 Aligned_cols=57 Identities=18% Similarity=0.187 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 006630 248 SLLYGWCKEGKLVEAKYVLVQMKD----AG-FEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304 (638)
Q Consensus 248 ~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 304 (638)
.|..-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+.-++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455566666666666666666532 12 2334455556666677777777666655444
No 464
>COG4755 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.53 E-value=1.9e+02 Score=23.65 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHhcccc----cchhhhhhhhhhHHHHHhhhhhhhhhhhhhhccCCccC
Q 006630 578 IAAEITEKVRKMAAERQIT----FKMYKRRGERDLKEKAKKQVDGRKRRARQRRWGGGRSK 634 (638)
Q Consensus 578 ~A~~~~~~~~~~~p~~~~~----~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (638)
...+++.++++++-.+..- +.-.++.|+.+.....+..-+....+.++|+-.||.|+
T Consensus 91 t~~e~~~~lielDIrHTSq~kelisk~srEGkl~pvl~~~~~~~~~~~re~RrGe~g~~~~ 151 (151)
T COG4755 91 TLREVAIKLIELDIRHTSQYKELISKFSREGKLPPVLMLYIQQRPQAPRERRRGEEGGTPR 151 (151)
T ss_pred HHHHHHHHHHHHhHHhHHHHHHHHHHHhhcCCCCchHHhhhhcccCchHhhcCCCcCCCCC
Confidence 3455666677776554433 45678889999999999998888888888888888764
No 465
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=33.43 E-value=2e+02 Score=27.25 Aligned_cols=21 Identities=10% Similarity=0.099 Sum_probs=10.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 006630 496 LLNSLLRAQKVEMAKDVWSCI 516 (638)
Q Consensus 496 ll~~~~~~g~~~~A~~~~~~~ 516 (638)
+...|.+.|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344445555555555555544
No 466
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=32.72 E-value=2.3e+02 Score=21.73 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=17.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHH
Q 006630 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508 (638)
Q Consensus 466 ~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 508 (638)
.|+.+.|.+++..+. .| |+ .|...++++...|.-+-
T Consensus 49 ~g~~~~ar~LL~~L~-rg----~~--aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 49 HGNESGARELLKRIV-QK----EG--WFSKFLQALRETEHHEL 84 (88)
T ss_pred cCcHHHHHHHHHHhc-cC----Cc--HHHHHHHHHHHcCchhh
Confidence 455555555555555 33 32 33444555554444433
No 467
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=32.23 E-value=2.9e+02 Score=22.83 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006630 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514 (638)
Q Consensus 471 ~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 514 (638)
++.++|..|...++- .-...-|......+...|++++|.++|.
T Consensus 81 ~~~~if~~l~~~~IG-~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIG-TKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTS-TTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCcc-HHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444555555444432 2233344444444445555555555544
No 468
>PRK11619 lytic murein transglycosylase; Provisional
Probab=32.16 E-value=7.4e+02 Score=27.47 Aligned_cols=47 Identities=11% Similarity=0.079 Sum_probs=24.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 006630 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547 (638)
Q Consensus 498 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 547 (638)
..+...|....|...|..+... .+......+...-.+.|.++.++..
T Consensus 415 ~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~ 461 (644)
T PRK11619 415 RELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQA 461 (644)
T ss_pred HHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3455667777777777666553 2333333444444455555554433
No 469
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=31.99 E-value=5.6e+02 Score=26.00 Aligned_cols=89 Identities=15% Similarity=0.323 Sum_probs=60.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCC-CCCH--
Q 006630 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV------------IRLACKLGELKEAVNVWNEMEAASL-SPGT-- 453 (638)
Q Consensus 389 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~-~p~~-- 453 (638)
+....-..|++++|..++.+.. +.||.++ ++.|.-.+++-.|.-+-.++..+-+ .||.
T Consensus 137 L~~ike~~Gdi~~Aa~il~el~-------VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~ 209 (439)
T KOG1498|consen 137 LAKIKEEQGDIAEAADILCELQ-------VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQE 209 (439)
T ss_pred HHHHHHHcCCHHHHHHHHHhcc-------hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHH
Confidence 4455667888888888877653 2223222 4567777888888777776654422 2443
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006630 454 ---DSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484 (638)
Q Consensus 454 ---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 484 (638)
.-|+.|+......+.+-.+.+.|+.....+.
T Consensus 210 lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~ 243 (439)
T KOG1498|consen 210 LKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGN 243 (439)
T ss_pred HHHHHHHHHHHhcccccchhhHHHHHHHHhcccc
Confidence 3578888888888888888888888877654
No 470
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=31.83 E-value=1.2e+02 Score=21.78 Aligned_cols=50 Identities=14% Similarity=0.104 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHH
Q 006630 450 SPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502 (638)
Q Consensus 450 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~ 502 (638)
.|....++.++..++...-.++++.++.++...|. -+..+|..-++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~---I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS---IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHH
Confidence 34556778888888887778888888888888874 556666666655554
No 471
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=31.82 E-value=6e+02 Score=30.20 Aligned_cols=154 Identities=14% Similarity=0.091 Sum_probs=84.2
Q ss_pred HhcCCHHHHHH------HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHCCCCCCHHHHHHHH
Q 006630 394 EKKEELEECVE------LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM-------EAASLSPGTDSFVVMV 460 (638)
Q Consensus 394 ~~~g~~~~a~~------~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~~~~p~~~~~~~li 460 (638)
...|.+.+|.+ ++......-.++....|..+...+-+.|+.++|+..-... ...+-+-+...|..+.
T Consensus 943 ~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nla 1022 (1236)
T KOG1839|consen 943 LLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLA 1022 (1236)
T ss_pred hcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHH
Confidence 34455555555 4443322222455667777888888888888887755432 2223222334555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC-----CCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC--CCCHHHH
Q 006630 461 HGFLGQGCLIEACEYFKEMVGR-----GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK-----GC--ELNVYAW 528 (638)
Q Consensus 461 ~~~~~~g~~~~A~~~~~~m~~~-----~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~~--~p~~~~~ 528 (638)
......++...|+..+.+.... |...+|...+++.+-..+...++++.|.++.+.+.+. |. -++..++
T Consensus 1023 l~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~ 1102 (1236)
T KOG1839|consen 1023 LYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSY 1102 (1236)
T ss_pred HHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHH
Confidence 5555566666776666655442 2112333334343333344557788888888777654 11 1234455
Q ss_pred HHHHHHHHccCCHHHHHHH
Q 006630 529 TIWIHSLFSNGHVKEACSY 547 (638)
Q Consensus 529 ~~li~~~~~~g~~~~A~~~ 547 (638)
..+...+...+++..|+..
T Consensus 1103 ~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1103 HALARLFESMKDFRNALEH 1121 (1236)
T ss_pred HHHHHHHhhhHHHHHHHHH
Confidence 6666666666666555543
No 472
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.49 E-value=5.8e+02 Score=26.05 Aligned_cols=62 Identities=11% Similarity=0.065 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhccC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 210 FVFGCLLDALCKNSSVKEAAKLFDEMRERF---KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271 (638)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 271 (638)
..+.-+.+-|..+|+++.|.+.|-+.+.-. ...+..|-.+|..-.-.|+|........+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 355667788888999999998888865432 22344566666666677777777666666554
No 473
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=31.46 E-value=1.2e+02 Score=29.30 Aligned_cols=60 Identities=10% Similarity=0.091 Sum_probs=41.9
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 536 FSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 536 ~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
.+.|+.++|..+|+.++.. .|+ +..+.-+........+.-+|-++|-+++...|.|..++
T Consensus 127 ~~~Gk~ekA~~lfeHAlal--aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALAL--APTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred HhccchHHHHHHHHHHHhc--CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHH
Confidence 4568888888888877754 454 33444444444455777888888888888888887775
No 474
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=31.29 E-value=2.7e+02 Score=23.72 Aligned_cols=48 Identities=21% Similarity=0.199 Sum_probs=24.0
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHh
Q 006630 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315 (638)
Q Consensus 267 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 315 (638)
..+.+.|++++.. -..++..+...++.-.|.++++.+.+.+...+..|
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 3444455544432 22344555555555666666666666554444333
No 475
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=31.05 E-value=3.8e+02 Score=26.52 Aligned_cols=121 Identities=12% Similarity=0.105 Sum_probs=77.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc------cCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhhcC
Q 006630 503 AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS------NGHVKEACSYCLDMMDADVMPQPDT-FAKLMRGLKKLYN 575 (638)
Q Consensus 503 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~------~g~~~~A~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~g~ 575 (638)
.+.++++..++++....+. |......+.|.++.. .-++..-..+|+.+... .|++++ .|.-. +..+..-
T Consensus 269 r~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~--apSPvV~LNRAV-Ala~~~G 344 (415)
T COG4941 269 RALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQA--APSPVVTLNRAV-ALAMREG 344 (415)
T ss_pred HHHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHh--CCCCeEeehHHH-HHHHhhh
Confidence 3456788888888877753 788877777765532 23566677778777654 566554 44333 3444344
Q ss_pred HHHHHHHHHHHHHHHHh--ccccc-----chhhhhhhhhhHHHHHhhhhhhhhhhhhhhc
Q 006630 576 RQIAAEITEKVRKMAAE--RQITF-----KMYKRRGERDLKEKAKKQVDGRKRRARQRRW 628 (638)
Q Consensus 576 ~~~A~~~~~~~~~~~p~--~~~~~-----~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 628 (638)
.+.+..+.+-+.+- |. ....+ +++.+.|..+||...|++..+.......|+|
T Consensus 345 p~agLa~ve~L~~~-~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~ 403 (415)
T COG4941 345 PAAGLAMVEALLAR-PRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAF 403 (415)
T ss_pred HHhHHHHHHHhhcc-cccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHH
Confidence 55555555544332 21 11112 7899999999999999998877776666554
No 476
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=30.81 E-value=2.5e+02 Score=21.59 Aligned_cols=34 Identities=18% Similarity=0.055 Sum_probs=17.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272 (638)
Q Consensus 239 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (638)
.|.|....-.+...+...|++++|++.+-++++.
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3445555555555555555555555555555543
No 477
>PRK09169 hypothetical protein; Validated
Probab=30.66 E-value=1.3e+03 Score=29.81 Aligned_cols=418 Identities=11% Similarity=0.069 Sum_probs=226.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhc---hhC----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccC-----
Q 006630 172 ITTEVFVILMRRFASARMVKKAIEVLDEM---PKY----GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF----- 239 (638)
Q Consensus 172 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m---~~~----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----- 239 (638)
.+...+..++.++++=.+-..+...-+.+ +.. -...|......++++++|.-+-......-..+-.+.
T Consensus 160 l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~al~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~ 239 (2316)
T PRK09169 160 LDAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQAMDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPG 239 (2316)
T ss_pred hhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHhcchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChH
Confidence 45666777788777755544433332222 110 012345556677888888766555554444433221
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---C----CCCCCHHHHHHHHHHHHHcCCHhHHHH----HHHHHH
Q 006630 240 ---KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD---A----GFEPDIVVYNNLLSGYAQMGKMTDAFE----LLKEMR 305 (638)
Q Consensus 240 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~----g~~p~~~~~~~ll~~~~~~g~~~~a~~----~~~~~~ 305 (638)
.-+......++++++|--+-+.+...-..+-. . ...-|..-....++++++-.+-+.+.+ +-..+.
T Consensus 240 l~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~ 319 (2316)
T PRK09169 240 LLQSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPGLRLALDPQGVANALNALSKWPDTEACRQAAEALAERLA 319 (2316)
T ss_pred HHHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence 22445567788888888776555443332221 1 112456667778888888765443222 222221
Q ss_pred Hc---CCCCCHHhHHHHHHHHHhcCCHHHHH----HHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHH----HHHH
Q 006630 306 RK---GCDPNANSYTVLIQALCRMEKMEEAN----RAFVEMERS---GCEADVVTYTTLISGFCKSRKIDRC----YEIL 371 (638)
Q Consensus 306 ~~---g~~~~~~~~~~li~~~~~~g~~~~A~----~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~A----~~~~ 371 (638)
.. ....+..-....+++++|..+-+.+. .+-+.+... .-..+..-....+++++|.++-+.+ ..+.
T Consensus 320 ~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA 399 (2316)
T PRK09169 320 QERGLLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLARDAGLRRALNAQELANALNALSKWPDEEACRAAAEALA 399 (2316)
T ss_pred hChhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 11 12235555677888899888766543 223333211 0134566667778888888765433 2333
Q ss_pred HHHHHC-C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HC----CCCCCHHHHHHHHHHHHHcCCHHHH----
Q 006630 372 DSMIQR-G--ILPNQLTYLHIMLAHEKKEELEECVELMGEMR---KI----GCVPDVSNYNVVIRLACKLGELKEA---- 437 (638)
Q Consensus 372 ~~m~~~-~--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~---~~----~~~~~~~~~~~li~~~~~~g~~~~A---- 437 (638)
..+... + -..|..-..+.+.+|++-+.-+.+......+. .. .-..+..-....+.++.|-.+.+..
T Consensus 400 ~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa 479 (2316)
T PRK09169 400 ARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALAARLAADARLRNALSAQELANALNALSKWPDEAACRRAA 479 (2316)
T ss_pred HHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHH
Confidence 333332 1 12467778889999998876664433332221 11 0134566667777888877664422
Q ss_pred HHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHH----HHHHHHhC-CCCCCCcHHHHHHHHHHHHHcCCHHHH
Q 006630 438 VNVWNEMEAA---SLSPGTDSFVVMVHGFLGQGCLIEACE----YFKEMVGR-GLLSAPQYGTLKALLNSLLRAQKVEMA 509 (638)
Q Consensus 438 ~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~----~~~~m~~~-~~~~~p~~~~~~~ll~~~~~~g~~~~A 509 (638)
..+...+... .-.-+.......+.++++-+..+.... +...+... .....-+..-+...++++++-.+.+.+
T Consensus 480 ~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~c 559 (2316)
T PRK09169 480 EALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDC 559 (2316)
T ss_pred HHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHH
Confidence 3333333211 012344566778889988877655433 22222221 111124555677788889887764332
Q ss_pred ----HHHHHHHHHc---CCCCCHHHHHHHHHHHHccCCHH----HHHHHHHHHHhC-C--CCCCHHHHHHHHHHHHhhcC
Q 006630 510 ----KDVWSCIVTK---GCELNVYAWTIWIHSLFSNGHVK----EACSYCLDMMDA-D--VMPQPDTFAKLMRGLKKLYN 575 (638)
Q Consensus 510 ----~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~----~A~~~~~~m~~~-~--~~p~~~t~~~ll~~~~~~g~ 575 (638)
..+...+... --..+...+...++++.+-+... -|..+...+.+. + -.-|+--+.++++++.|..+
T Consensus 560 r~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~ 639 (2316)
T PRK09169 560 RAAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDEDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPD 639 (2316)
T ss_pred HHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCC
Confidence 2233333222 11235567778888998877543 233344444332 1 12256668889999999888
Q ss_pred HHHHHHHHHHHHHH
Q 006630 576 RQIAAEITEKVRKM 589 (638)
Q Consensus 576 ~~~A~~~~~~~~~~ 589 (638)
.+........+-..
T Consensus 640 ~~~cr~Aa~aLA~~ 653 (2316)
T PRK09169 640 EDDCRQAAEALAAR 653 (2316)
T ss_pred chhHHHHHHHHHHH
Confidence 77766655555543
No 478
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=30.30 E-value=6.3e+02 Score=26.10 Aligned_cols=172 Identities=12% Similarity=-0.033 Sum_probs=74.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCC
Q 006630 145 IKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS 224 (638)
Q Consensus 145 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 224 (638)
++++...| +.++..+.......+ +...+.....++.......-...+.+.+. .++..+......++...+.
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d~---~~ev~~~aa~al~~~~~~~~~~~L~~~L~----d~~~~vr~aaa~ALg~i~~ 115 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEAD---EPGRVACAALALLAQEDALDLRSVLAVLQ----AGPEGLCAGIQAALGWLGG 115 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhCC---ChhHHHHHHHHHhccCChHHHHHHHHHhc----CCCHHHHHHHHHHHhcCCc
Confidence 55666666 455665555553321 22333333333332222221222222222 3455556666666666665
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 006630 225 VKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304 (638)
Q Consensus 225 ~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 304 (638)
.+....+..-+... +.......+.++...+. .+...+....+ .+|...-...+.++...+..+..- .+..+
T Consensus 116 ~~a~~~L~~~L~~~---~p~vR~aal~al~~r~~--~~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~-~L~~a 186 (410)
T TIGR02270 116 RQAEPWLEPLLAAS---EPPGRAIGLAALGAHRH--DPGPALEAALT---HEDALVRAAALRALGELPRRLSES-TLRLY 186 (410)
T ss_pred hHHHHHHHHHhcCC---ChHHHHHHHHHHHhhcc--ChHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchH-HHHHH
Confidence 55443333333221 33333344444443321 12233333332 345555555555555555432222 22233
Q ss_pred HHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006630 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338 (638)
Q Consensus 305 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 338 (638)
.. .+|..+-..-+.+....|. ++|...+..
T Consensus 187 l~---d~~~~VR~aA~~al~~lG~-~~A~~~l~~ 216 (410)
T TIGR02270 187 LR---DSDPEVRFAALEAGLLAGS-RLAWGVCRR 216 (410)
T ss_pred Hc---CCCHHHHHHHHHHHHHcCC-HhHHHHHHH
Confidence 22 2345555555555555555 444444444
No 479
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=30.06 E-value=5.6e+02 Score=27.29 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=12.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 006630 318 VLIQALCRMEKMEEANRAFVEM 339 (638)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m 339 (638)
.++.-|.+.+++++|..++..|
T Consensus 413 eL~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhC
Confidence 3445555555555555555555
No 480
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.05 E-value=6.9e+02 Score=26.45 Aligned_cols=36 Identities=14% Similarity=0.296 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC
Q 006630 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN 312 (638)
Q Consensus 277 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~ 312 (638)
+...+..++.+....+....|+.+++.+.+.|..|.
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~ 282 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIY 282 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHH
Confidence 333444444444333334455555555555554443
No 481
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=29.82 E-value=6e+02 Score=25.69 Aligned_cols=56 Identities=13% Similarity=0.018 Sum_probs=34.8
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 006630 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALC-RMEKMEEANRAFVEME 340 (638)
Q Consensus 285 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~ 340 (638)
+..+.+.|.+..|.++.+-+......-|......+|+.|+ +.++++--+++.+...
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 3455666777777777777776655445555556666554 5566666666665544
No 482
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=29.46 E-value=2.9e+02 Score=29.97 Aligned_cols=90 Identities=21% Similarity=0.203 Sum_probs=57.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHhH------HHHHHHHHHHcCCCCCHHhHHHH
Q 006630 248 SLLYGWCKEGKLVEAKYVLVQMKDAG--FEPDIVVYNNLLSGYAQMGKMTD------AFELLKEMRRKGCDPNANSYTVL 319 (638)
Q Consensus 248 ~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~------a~~~~~~~~~~g~~~~~~~~~~l 319 (638)
+|..+|..+|++..+.++++...... -+.-...||..|+...+.|.++. |.++++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78888999999999998888887542 22334567778888888887542 333333333 45577788887
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 006630 320 IQALCRMEKMEEANRAFVEME 340 (638)
Q Consensus 320 i~~~~~~g~~~~A~~~~~~m~ 340 (638)
+++-..--.-....-++.++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 776655333333444444444
No 483
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=29.17 E-value=2.6e+02 Score=21.39 Aligned_cols=14 Identities=14% Similarity=0.278 Sum_probs=6.1
Q ss_pred CCHHHHHHHHHHHH
Q 006630 362 RKIDRCYEILDSMI 375 (638)
Q Consensus 362 g~~~~A~~~~~~m~ 375 (638)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444444
No 484
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=28.19 E-value=1.1e+03 Score=28.21 Aligned_cols=202 Identities=11% Similarity=-0.015 Sum_probs=105.4
Q ss_pred HHcCCHHHHHH------HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCCcHHHHHHHH
Q 006630 429 CKLGELKEAVN------VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG-----RGLLSAPQYGTLKALL 497 (638)
Q Consensus 429 ~~~g~~~~A~~------~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~p~~~~~~~ll 497 (638)
...|.+.+|.+ +++.....--++....|..+...+-+.|+.++|+..-....- .|..++.+...|..+.
T Consensus 943 ~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nla 1022 (1236)
T KOG1839|consen 943 LLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLA 1022 (1236)
T ss_pred hcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHH
Confidence 33455555555 555322221144456788888888899999999876544321 2322122344555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc-----CC-CCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhC-----CC--CCCHHHH
Q 006630 498 NSLLRAQKVEMAKDVWSCIVTK-----GC-ELNVY-AWTIWIHSLFSNGHVKEACSYCLDMMDA-----DV--MPQPDTF 563 (638)
Q Consensus 498 ~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~--~p~~~t~ 563 (638)
-.+...++...|...+...... |. .|... +++.+-..+...+.++.|+++.+.+... |. -++..++
T Consensus 1023 l~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~ 1102 (1236)
T KOG1839|consen 1023 LYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSY 1102 (1236)
T ss_pred HHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHH
Confidence 5556667777788777776554 21 34433 3343333344457888899888887652 11 1234445
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccccchhhhhhhhhhHHHHHhhhhhhhhhhhhhhccCCc
Q 006630 564 AKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKAKKQVDGRKRRARQRRWGGGR 632 (638)
Q Consensus 564 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 632 (638)
..+.......+++..|....+......++--. .-..+.++-.+.......+.-..-++....|-++.
T Consensus 1103 ~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg--~~hsrt~~S~~~~~~~T~~~v~~Qk~~~~~~~~~~ 1169 (1236)
T KOG1839|consen 1103 HALARLFESMKDFRNALEHEKVTYGIYKEQLG--PDHSRTKESSEWLNLSTAIAVKIQKKLLANWQKTT 1169 (1236)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhC--CCcccchhhHHHHHHhhHHHHHHHHHHHHHhhhcc
Confidence 56655555556666665555544443322110 11223333344444444433333444444455543
No 485
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=27.68 E-value=6.9e+02 Score=25.70 Aligned_cols=62 Identities=18% Similarity=0.234 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHc--C-----CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRK--G-----CDPNANSYTVLIQALCRMEKMEEANRAFVEME 340 (638)
Q Consensus 279 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--g-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 340 (638)
.+...|++..+-.||+..|+++++.+.-. + ..-...++-.+.-+|.-.+++.+|.+.|..+.
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888888888888887765321 1 11234456667777888888899988888765
No 486
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=27.64 E-value=5.7e+02 Score=24.74 Aligned_cols=96 Identities=15% Similarity=0.265 Sum_probs=48.5
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----
Q 006630 313 ANSYTVLIQALCRMEKMEEANRAFVEMER----SGCEADVVTYTT-LISGFCKSRKIDRCYEILDSMIQRGILPNQ---- 383 (638)
Q Consensus 313 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---- 383 (638)
...+..+...|++.++.+.+.+..++..+ .|.+.|+...-+ |.-.|....-.++-++..+.|.++|..-+.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 44556667777777777777666555433 344445433222 222233344456666667777776643221
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 384 LTYLHIMLAHEKKEELEECVELMGEMR 410 (638)
Q Consensus 384 ~t~~~ll~~~~~~g~~~~a~~~~~~~~ 410 (638)
.+|..+. +....++.+|-.++....
T Consensus 195 K~Y~Gi~--~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 195 KVYKGIF--KMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHH--HHHHHhhHHHHHHHHHHh
Confidence 2332222 122344556655555544
No 487
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=27.63 E-value=8.9e+02 Score=27.00 Aligned_cols=116 Identities=16% Similarity=0.216 Sum_probs=59.6
Q ss_pred HHHHHHHhcc-CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----------HHHHHHHHHHHcCCH
Q 006630 229 AKLFDEMRER-FKPS---LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV----------VYNNLLSGYAQMGKM 294 (638)
Q Consensus 229 ~~~~~~~~~~-~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------~~~~ll~~~~~~g~~ 294 (638)
...+++|+.+ ..|+ ..+...++-.|....+++...++.+.+... ||.. .|.-.++---+.|+-
T Consensus 183 ~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 183 NDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccH
Confidence 3445566554 2222 344555666666777777777777777653 3321 222233333345677
Q ss_pred hHHHHHHHHHHHc-C-CCCCHHhH-----HH--HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 006630 295 TDAFELLKEMRRK-G-CDPNANSY-----TV--LIQALCRMEKMEEANRAFVEMERSGCEADVV 349 (638)
Q Consensus 295 ~~a~~~~~~~~~~-g-~~~~~~~~-----~~--li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 349 (638)
+.|+.+.-.+.+. | +.||.... .- +-..|...+..+.|.+.|++.-+. +|+..
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev--eP~~~ 321 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV--EPLEY 321 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc--Cchhh
Confidence 7777766655543 3 44553221 11 111233344556677777766544 45443
No 488
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=27.57 E-value=8.9e+02 Score=26.97 Aligned_cols=126 Identities=12% Similarity=0.056 Sum_probs=79.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 006630 462 GFLGQGCLIEACEYFKEMVGRGLLSAP--QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539 (638)
Q Consensus 462 ~~~~~g~~~~A~~~~~~m~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 539 (638)
++..-|+-++|-.+.++|.... .| .+.-.-++..+|+..|+....++++.-.+.. ..-|+.-.....-++.-..
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk---dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~ 585 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK---DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFR 585 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC---chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEec
Confidence 3445677788888999988764 23 2333445667788888888777777766553 2334544544555666777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcc
Q 006630 540 HVKEACSYCLDMMDADVMPQPD--TFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQ 594 (638)
Q Consensus 540 ~~~~A~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 594 (638)
+++....+..-+.+ ...|... +-..|.-+|...|+ .+|..+++-+.+ +|.+-
T Consensus 586 dp~~~~s~V~lLse-s~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~-D~~~f 639 (929)
T KOG2062|consen 586 DPEQLPSTVSLLSE-SYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS-DPVDF 639 (929)
T ss_pred ChhhchHHHHHHhh-hcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc-ChHHH
Confidence 88877777654433 3345433 23455557776666 567888887776 66543
No 489
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=27.39 E-value=5.9e+02 Score=24.86 Aligned_cols=170 Identities=17% Similarity=0.174 Sum_probs=77.4
Q ss_pred CHHHHHHHH-HHHHhcCC-hhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHH
Q 006630 137 SYDVYRALI-KSLSKMRK-FGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGC 214 (638)
Q Consensus 137 ~~~~~~~li-~~~~~~~~-~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ 214 (638)
...++++|. +.+.+.|= ..-|.++|.+..... ..+.++.++.+.+.-+.-.++| +|+-.+-..
T Consensus 164 ~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek-------~i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~ 228 (412)
T KOG2297|consen 164 PATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEK-------DINDLISSLRKGKMDDRLMEFF--------PPNKRSVEH 228 (412)
T ss_pred CHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhc-------cHHHHHHHHHhcChHhHHHHhc--------CCcchhHHH
Confidence 344444444 34445552 234567777665543 2445666666555544444443 566555554
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHH----HHHHHHHHHH
Q 006630 215 LLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVL-VQMKDAGFEPDIV----VYNNLLSGYA 289 (638)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~g~~p~~~----~~~~ll~~~~ 289 (638)
....+...|--+-..-.=.++... .--..-..|..-..+...+++..... ++|++.++ |+.. .|..++++--
T Consensus 229 Fak~Ft~agL~elvey~~~q~~~~--a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsave 305 (412)
T KOG2297|consen 229 FAKYFTDAGLKELVEYHRNQQSEG--ARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVE 305 (412)
T ss_pred HHHHHhHhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHh
Confidence 444444444222111000000000 00011122233333444455554444 45665553 4443 5666665432
Q ss_pred HcCCH-hHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 006630 290 QMGKM-TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333 (638)
Q Consensus 290 ~~g~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 333 (638)
=..+- --|.+.++. ..+|..|+.++|..|+.+-.+
T Consensus 306 WnKkeelva~qalrh---------lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 306 WNKKEELVAEQALRH---------LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred hchHHHHHHHHHHHH---------HHhhhHHHHHHhcCChHHHHH
Confidence 22111 112223322 345778888888888877554
No 490
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=27.09 E-value=9.4e+02 Score=27.11 Aligned_cols=149 Identities=11% Similarity=0.063 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC--CCHHhHHHHHHHHHhcCC
Q 006630 259 LVEAKYVLVQMKD--------AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD--PNANSYTVLIQALCRMEK 328 (638)
Q Consensus 259 ~~~A~~~~~~m~~--------~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~ 328 (638)
.++...+++.... .++..+..+...++... .|+..+++.+++.+...... .+... =.
T Consensus 170 ~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~-----------It 236 (725)
T PRK13341 170 DEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLID-----------IT 236 (725)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCcee-----------cc
Confidence 4556666666554 23455666666666543 68888888888776532100 00000 01
Q ss_pred HHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HH
Q 006630 329 MEEANRAFVEME---RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE-----LE 400 (638)
Q Consensus 329 ~~~A~~~~~~m~---~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-----~~ 400 (638)
.+.+.+.+.+.. ...-.+......+++.. ++.++++.|+.++.+|.+.|..|....-..++.+....|. ..
T Consensus 237 ~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ks-irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~ 315 (725)
T PRK13341 237 LAIAEESIQQRAVLYDKEGDAHFDTISAFIKS-LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALV 315 (725)
T ss_pred HHHHHHHHHHhhhhcccCCCCCHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHH
Confidence 122233332211 11012333444444543 4568899999999999988887766555555555544442 22
Q ss_pred HHHHHHHHHHHCCCCCCHHHH
Q 006630 401 ECVELMGEMRKIGCVPDVSNY 421 (638)
Q Consensus 401 ~a~~~~~~~~~~~~~~~~~~~ 421 (638)
.+...+......|++--....
T Consensus 316 ~~~~~~~a~~~~g~pE~~~~l 336 (725)
T PRK13341 316 VVEACAAAFERVGLPEGLYPL 336 (725)
T ss_pred HHHHHHHHHHHhCCcchhhHH
Confidence 344444445555654443333
No 491
>COG1775 HgdB Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB [Amino acid transport and metabolism]
Probab=26.97 E-value=2.2e+02 Score=28.42 Aligned_cols=83 Identities=12% Similarity=0.051 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc---c----hhh--hhhhhhhH
Q 006630 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF---K----MYK--RRGERDLK 609 (638)
Q Consensus 539 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~---~----~y~--~~g~~~~A 609 (638)
+..+.+.++++++- -..+|...|-+++.+ +.+-++.+.++.++.+.+|..+ + +.. ..++-++.
T Consensus 143 ~~~~~~~e~lEe~~-----g~~iT~e~L~da~~r---~N~~rea~~k~~kL~~~~P~plsg~D~~~~~~~~~~~~d~d~~ 214 (379)
T COG1775 143 NELDKFKELLEELT-----GNEITEEKLRDAIAR---YNRLREALAKLYKLAKHKPSPLSGSDAFNVMAFAVFLRDKDAF 214 (379)
T ss_pred HHHHHHHHHHHHHh-----CCcccHHHHHHHHHH---HHHHHHHHHHHHhhhccCCCCCchhHHHHHhhHHHHhcchHHH
Confidence 45666677776654 245677788888876 4445667778888888877775 1 221 34667778
Q ss_pred HHHHhhhhhhhhhhhhhhcc
Q 006630 610 EKAKKQVDGRKRRARQRRWG 629 (638)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~ 629 (638)
...++++.+.-++...++|+
T Consensus 215 ~~~l~~l~eelekr~~eg~~ 234 (379)
T COG1775 215 IEELEELIEELEKRVEEGEG 234 (379)
T ss_pred HHHHHHHHHHHHHHHhccCC
Confidence 88888877777776666665
No 492
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.89 E-value=7e+02 Score=25.51 Aligned_cols=64 Identities=17% Similarity=0.132 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 006630 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAG--FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307 (638)
Q Consensus 244 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 307 (638)
..+.-+...|..+|+++.|++.|.+.+.-- .+--...|-.+|..-.-.|+|........+....
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 456778889999999999999999965421 0112334556666666778887777666665543
No 493
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.72 E-value=7.6e+02 Score=25.92 Aligned_cols=180 Identities=16% Similarity=0.139 Sum_probs=107.1
Q ss_pred HcCCHHHHHHHHHHHHHCC-CCCC--HH-H----HHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCCcHHHH--HHHHH
Q 006630 430 KLGELKEAVNVWNEMEAAS-LSPG--TD-S----FVVMVHG-FLGQGCLIEACEYFKEMVGRGLLSAPQYGTL--KALLN 498 (638)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~~-~~p~--~~-~----~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~--~~ll~ 498 (638)
-.|+..+|++-...|.+-- -.|. .. . ...++.. ++.-|.++.|..-|....+.-. ..+...+ ..+.-
T Consensus 335 v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~--~~dl~a~~nlnlAi 412 (629)
T KOG2300|consen 335 VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTE--SIDLQAFCNLNLAI 412 (629)
T ss_pred HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhh--HHHHHHHHHHhHHH
Confidence 4689999998888886531 1233 11 1 1222333 3447889999999988876542 2333322 23445
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH------H--HHHH--HHccCCHHHHHHHHHHHHhCCCCCC-----HHHH
Q 006630 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWT------I--WIHS--LFSNGHVKEACSYCLDMMDADVMPQ-----PDTF 563 (638)
Q Consensus 499 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~------~--li~~--~~~~g~~~~A~~~~~~m~~~~~~p~-----~~t~ 563 (638)
.|.+.|+.+.-.++++.+.. ++..++. . ++.+ ....+++.||..++.+-++..-.-| .-.+
T Consensus 413 ~YL~~~~~ed~y~~ld~i~p----~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~L 488 (629)
T KOG2300|consen 413 SYLRIGDAEDLYKALDLIGP----LNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSL 488 (629)
T ss_pred HHHHhccHHHHHHHHHhcCC----CCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHH
Confidence 67788877766666655532 2222111 1 1122 2467899999999988776431112 1123
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc---c-------chhhhhhh--hhhHHHHHhh
Q 006630 564 AKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT---F-------KMYKRRGE--RDLKEKAKKQ 615 (638)
Q Consensus 564 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~-------~~y~~~g~--~~~A~~~~~~ 615 (638)
..|.......||..+++.+..-+..+..+-++. + ++|..+|+ .++..+.+++
T Consensus 489 vLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 489 VLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred HHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 333445566799999999988888777665543 1 57777777 6666666665
No 494
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=26.70 E-value=1.5e+03 Score=29.32 Aligned_cols=321 Identities=11% Similarity=0.044 Sum_probs=162.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 006630 248 SLLYGWCKEGKLVEAKYVLVQM----KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQAL 323 (638)
Q Consensus 248 ~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 323 (638)
.+..+-.+++.+.+|...+++- ++. .....-|-.+...|...+++|....+...-.. .|+ ...-|-..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHH
Confidence 4556677888899999888883 222 11233444555589999999988777664211 122 23344466
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHH
Q 006630 324 CRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHI-MLAHEKKEELEEC 402 (638)
Q Consensus 324 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l-l~~~~~~g~~~~a 402 (638)
...|++..|...|+.+.+.+ ++...+++-++......|.+...+...+..... ..+....++++ +.+--+.++++..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 77899999999999999774 233677777777777788888877765555443 22233333332 3344566777766
Q ss_pred HHHHHHHHHCCCCCCHHHHHH--HHHHHHHcC--CHHHHHHHHHHHHHC--------CCCCC-HHHHHHHHHHHHhcCCH
Q 006630 403 VELMGEMRKIGCVPDVSNYNV--VIRLACKLG--ELKEAVNVWNEMEAA--------SLSPG-TDSFVVMVHGFLGQGCL 469 (638)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~--li~~~~~~g--~~~~A~~~~~~m~~~--------~~~p~-~~~~~~li~~~~~~g~~ 469 (638)
...+. .. +..+|.. +.....+.. +.-.-.+..+.+.+. ...-+ ...|..++....-....
T Consensus 1538 e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1538 ESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred hhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 66554 11 1112222 222222211 111111122222211 10100 12344444332221111
Q ss_pred HHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCC-----CHHHHHHHHHHHHccCCHHH
Q 006630 470 IEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI-VTKGCEL-----NVYAWTIWIHSLFSNGHVKE 543 (638)
Q Consensus 470 ~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~-~~~~~~p-----~~~~~~~li~~~~~~g~~~~ 543 (638)
.....++..-..... .-+..-|..-+..-....+..+-+--+++. ......| -...|-........+|+++.
T Consensus 1611 ~~~~~l~~~s~~~~s--~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDS--ANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred HHHHHhhccCccccc--cccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 111100000000000 011111211221111111111111111111 1111121 24567777888888999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 006630 544 ACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590 (638)
Q Consensus 544 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 590 (638)
|...+-++.+.+ .| ..+.-.+.-....|+...|..++++.++.+
T Consensus 1689 A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1689 AQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 998877766554 33 344455666778899999999999999655
No 495
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=26.15 E-value=54 Score=31.52 Aligned_cols=27 Identities=15% Similarity=0.064 Sum_probs=24.7
Q ss_pred HhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 571 KKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 571 ~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
.+.|+.++|..+++.++++.|.++..+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L 153 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQIL 153 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHH
Confidence 467999999999999999999999875
No 496
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=25.98 E-value=3.2e+02 Score=21.72 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=11.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 006630 318 VLIQALCRMEKMEEANRAFVEM 339 (638)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m 339 (638)
.++.-|...|+.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3444555556666666665554
No 497
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=25.77 E-value=1.1e+03 Score=27.29 Aligned_cols=125 Identities=14% Similarity=0.126 Sum_probs=75.4
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHH
Q 006630 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509 (638)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A 509 (638)
+.....+|.++-.+|.+ .-+.+|.++++.|.. +.-++.+.... ..+.. -.....+.-
T Consensus 1159 k~D~r~da~klk~~me~--------qk~tli~AL~kKg~a---~ak~e~l~g~~---e~dae---------ee~s~ld~~ 1215 (1304)
T KOG1114|consen 1159 KEDTRPDAVKLKKKMEK--------QKDTLIDALVKKGEA---FAKYEALKGHK---EQDAE---------EELSKLDSY 1215 (1304)
T ss_pred ccCCcchHHHHHHHHHH--------HHHHHHHHHHHhhhH---Hhhhhhhcccc---cccch---------hhhhhhhhH
Confidence 34445567777777765 346778888877642 22222221111 11111 111234445
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhhcCHH
Q 006630 510 KDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD-ADVMPQPDTFAKLMRGLKKLYNRQ 577 (638)
Q Consensus 510 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~t~~~ll~~~~~~g~~~ 577 (638)
.+.|.++.+---..|..+|..-...+..+|++-.|++++.++++ .+-.++...|..++..+...|...
T Consensus 1216 ~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~H 1284 (1304)
T KOG1114|consen 1216 NENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWNH 1284 (1304)
T ss_pred HHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCchH
Confidence 55666665542233667777777777888999999999988876 555777777877777777777653
No 498
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=25.03 E-value=6e+02 Score=26.00 Aligned_cols=61 Identities=20% Similarity=0.243 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHc--CCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRK--GCDPNA-NSYTVLIQALCRMEKMEEANRAFVEME 340 (638)
Q Consensus 279 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 340 (638)
.+...|++...-.|+.....+.++.|.+. |..|.. +| --+.-+|.-.|++.+|.+.|-...
T Consensus 236 fsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VT-Y~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 236 FSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVT-YQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEe-eehhHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777778877767777766654 333332 23 335556777788888888887654
No 499
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=24.78 E-value=2.3e+02 Score=20.74 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc
Q 006630 224 SVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKE 256 (638)
Q Consensus 224 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 256 (638)
+.+.|..++..++.....++..||++...+.+.
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHc
Confidence 345566666666544444556666666555443
No 500
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=24.63 E-value=3.1e+02 Score=22.16 Aligned_cols=44 Identities=27% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006630 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362 (638)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 362 (638)
.+++.+.+|...++|+++++-|.+.| ..+...-+.|-..+.+.|
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~~kG 109 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILVKKG 109 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhh
Done!