Query 006630
Match_columns 638
No_of_seqs 845 out of 4020
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 04:44:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006630.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006630hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.3E-42 7.9E-47 376.6 39.5 473 135-622 81-582 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.9E-40 6.5E-45 361.5 40.7 481 103-597 83-587 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 4.2E-28 1.4E-32 249.0 49.7 379 183-574 8-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 4.8E-28 1.6E-32 248.6 49.8 380 145-537 6-385 (388)
5 4g26_A Pentatricopeptide repea 100.0 2E-29 7E-34 263.6 25.8 186 245-430 28-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 2E-29 7E-34 263.6 25.4 206 191-396 7-223 (501)
7 2gw1_A Mitochondrial precursor 100.0 7E-26 2.4E-30 241.4 41.9 451 138-600 6-489 (514)
8 2gw1_A Mitochondrial precursor 99.9 2E-25 7E-30 237.8 33.4 439 174-622 6-481 (514)
9 3fp2_A TPR repeat-containing p 99.9 6.5E-24 2.2E-28 227.6 39.0 438 138-598 25-500 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 4.1E-23 1.4E-27 216.2 42.4 319 133-460 21-370 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 4.3E-23 1.5E-27 216.0 42.4 314 173-519 25-358 (450)
12 3fp2_A TPR repeat-containing p 99.9 2.9E-23 9.8E-28 222.6 34.2 432 174-621 25-493 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 3.8E-19 1.3E-23 179.5 41.6 331 137-501 2-351 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 3.8E-19 1.3E-23 179.5 41.1 318 211-573 5-353 (359)
15 2ooe_A Cleavage stimulation fa 99.9 1.9E-18 6.6E-23 184.6 47.5 427 135-594 10-497 (530)
16 2xm6_A Protein corresponding t 99.9 6E-17 2.1E-21 171.1 54.8 360 207-597 37-443 (490)
17 2xm6_A Protein corresponding t 99.9 2E-16 6.8E-21 167.1 53.7 391 173-596 38-474 (490)
18 3hym_B Cell division cycle pro 99.8 4.5E-19 1.5E-23 176.8 29.0 275 314-596 23-306 (330)
19 2ooe_A Cleavage stimulation fa 99.8 4.2E-17 1.4E-21 174.2 45.9 418 103-554 12-492 (530)
20 3hym_B Cell division cycle pro 99.8 1.7E-18 5.9E-23 172.6 32.3 284 209-535 22-314 (330)
21 1fch_A Peroxisomal targeting s 99.8 1.6E-18 5.6E-23 175.8 27.3 307 186-516 37-356 (368)
22 3mkr_A Coatomer subunit epsilo 99.8 3.8E-18 1.3E-22 166.5 26.4 275 321-613 7-288 (291)
23 1fch_A Peroxisomal targeting s 99.8 5.6E-18 1.9E-22 171.8 27.0 304 149-477 36-354 (368)
24 4g1t_A Interferon-induced prot 99.8 9.9E-17 3.4E-21 168.7 36.3 390 172-596 49-466 (472)
25 4g1t_A Interferon-induced prot 99.8 1.8E-16 6E-21 166.8 37.0 212 398-625 228-465 (472)
26 4eqf_A PEX5-related protein; a 99.8 3E-18 1E-22 173.8 21.8 247 313-592 65-313 (365)
27 1xi4_A Clathrin heavy chain; a 99.8 3.6E-15 1.2E-19 165.0 47.1 380 171-610 982-1375(1630)
28 3cv0_A Peroxisome targeting si 99.8 2.1E-17 7.3E-22 164.4 27.1 285 281-595 24-321 (327)
29 1b89_A Protein (clathrin heavy 99.8 1.2E-18 4.2E-23 173.5 17.4 239 186-465 15-253 (449)
30 1xi4_A Clathrin heavy chain; a 99.8 1.3E-14 4.3E-19 160.7 50.1 339 181-574 1056-1415(1630)
31 4eqf_A PEX5-related protein; a 99.8 8.4E-18 2.9E-22 170.5 23.3 275 243-550 65-352 (365)
32 3cv0_A Peroxisome targeting si 99.8 5E-17 1.7E-21 161.7 27.6 279 314-622 22-318 (327)
33 1b89_A Protein (clathrin heavy 99.8 3E-17 1E-21 163.5 20.8 281 150-474 15-303 (449)
34 3mkr_A Coatomer subunit epsilo 99.7 1.6E-15 5.5E-20 147.8 28.4 195 279-483 66-265 (291)
35 3spa_A Mtrpol, DNA-directed RN 99.7 1.1E-17 3.9E-22 179.2 11.5 152 206-362 124-286 (1134)
36 3spa_A Mtrpol, DNA-directed RN 99.7 1.1E-17 3.8E-22 179.4 11.2 123 239-361 123-249 (1134)
37 3uq3_A Heat shock protein STI1 99.7 4.4E-15 1.5E-19 142.0 25.9 227 349-591 6-238 (258)
38 2pl2_A Hypothetical conserved 99.7 9.9E-16 3.4E-20 142.6 20.4 196 415-617 2-212 (217)
39 3uq3_A Heat shock protein STI1 99.7 3.4E-14 1.2E-18 135.7 26.6 223 315-553 7-235 (258)
40 3e4b_A ALGK; tetratricopeptide 99.7 1.6E-14 5.5E-19 150.2 26.0 376 183-593 12-425 (452)
41 1xnf_A Lipoprotein NLPI; TPR, 99.7 4.6E-15 1.6E-19 143.5 20.3 243 361-613 18-269 (275)
42 4e6h_A MRNA 3'-END-processing 99.7 3.4E-12 1.2E-16 137.2 44.3 432 135-596 63-577 (679)
43 3u4t_A TPR repeat-containing p 99.7 1.3E-14 4.4E-19 140.2 23.3 240 353-598 8-259 (272)
44 2pl2_A Hypothetical conserved 99.6 1.9E-14 6.5E-19 133.8 21.6 199 136-340 3-212 (217)
45 2h6f_A Protein farnesyltransfe 99.6 5.8E-14 2E-18 141.6 24.5 241 348-597 97-356 (382)
46 2ho1_A Type 4 fimbrial biogene 99.6 1.3E-13 4.6E-18 131.3 25.5 208 385-597 39-246 (252)
47 2q7f_A YRRB protein; TPR, prot 99.6 2.6E-14 8.8E-19 135.4 19.9 210 384-600 24-233 (243)
48 1ouv_A Conserved hypothetical 99.6 1.6E-12 5.5E-17 125.5 32.6 230 347-596 5-258 (273)
49 3e4b_A ALGK; tetratricopeptide 99.6 1.2E-13 3.9E-18 143.8 26.0 378 143-552 8-419 (452)
50 2vq2_A PILW, putative fimbrial 99.6 2.9E-13 1E-17 126.2 25.6 210 384-597 9-219 (225)
51 2vq2_A PILW, putative fimbrial 99.6 3.4E-13 1.2E-17 125.7 25.9 201 137-341 7-210 (225)
52 2ho1_A Type 4 fimbrial biogene 99.6 4.9E-13 1.7E-17 127.4 27.5 200 138-342 37-238 (252)
53 4e6h_A MRNA 3'-END-processing 99.6 7.4E-12 2.5E-16 134.6 39.2 443 153-623 47-574 (679)
54 3u4t_A TPR repeat-containing p 99.6 3.6E-13 1.2E-17 129.9 26.5 244 315-566 5-261 (272)
55 2h6f_A Protein farnesyltransfe 99.6 4.2E-13 1.4E-17 135.3 26.6 234 137-377 96-348 (382)
56 1xnf_A Lipoprotein NLPI; TPR, 99.6 7.6E-14 2.6E-18 134.8 19.2 223 150-377 17-244 (275)
57 2q7f_A YRRB protein; TPR, prot 99.6 1.8E-13 6.1E-18 129.5 21.2 201 137-342 22-222 (243)
58 1ouv_A Conserved hypothetical 99.6 1.1E-11 3.6E-16 119.7 33.5 224 242-483 5-252 (273)
59 3vtx_A MAMA; tetratricopeptide 99.6 5.2E-13 1.8E-17 120.5 22.5 174 416-595 3-176 (184)
60 2ond_A Cleavage stimulation fa 99.6 4.2E-12 1.4E-16 125.0 29.7 226 365-596 33-277 (308)
61 4abn_A Tetratricopeptide repea 99.5 1.8E-13 6.3E-18 143.2 20.7 214 399-621 84-323 (474)
62 3sf4_A G-protein-signaling mod 99.5 2.7E-13 9.2E-18 139.0 20.1 299 277-608 8-365 (406)
63 4a1s_A PINS, partner of inscut 99.5 3.4E-13 1.2E-17 138.7 19.5 277 282-591 52-374 (411)
64 4a1s_A PINS, partner of inscut 99.5 4.8E-13 1.6E-17 137.6 20.5 204 418-621 126-374 (411)
65 2ond_A Cleavage stimulation fa 99.5 2.4E-11 8.4E-16 119.5 29.1 218 155-377 33-270 (308)
66 3sf4_A G-protein-signaling mod 99.5 7.6E-13 2.6E-17 135.6 18.7 239 136-374 7-293 (406)
67 3ro2_A PINS homolog, G-protein 99.5 7.4E-13 2.5E-17 131.6 18.1 271 315-618 7-331 (338)
68 3ro2_A PINS homolog, G-protein 99.5 9.4E-13 3.2E-17 130.9 18.7 284 278-592 5-335 (338)
69 3ulq_A Response regulator aspa 99.5 6.1E-12 2.1E-16 128.1 24.5 234 354-592 109-371 (383)
70 3vtx_A MAMA; tetratricopeptide 99.5 1.5E-11 5E-16 110.9 22.7 167 137-307 4-170 (184)
71 3as5_A MAMA; tetratricopeptide 99.4 1.5E-11 5E-16 110.5 21.8 174 419-598 9-182 (186)
72 3nf1_A KLC 1, kinesin light ch 99.4 7.2E-13 2.5E-17 130.4 14.1 249 313-592 27-310 (311)
73 3ulq_A Response regulator aspa 99.4 2.4E-11 8.1E-16 123.7 22.8 162 249-410 109-291 (383)
74 4i17_A Hypothetical protein; T 99.4 3.1E-11 1.1E-15 112.9 21.5 206 381-600 5-220 (228)
75 4abn_A Tetratricopeptide repea 99.4 1.5E-11 5.2E-16 128.6 21.1 209 190-404 84-313 (474)
76 1hz4_A MALT regulatory protein 99.4 4.8E-10 1.6E-14 113.5 30.8 261 352-615 57-345 (373)
77 3q15_A PSP28, response regulat 99.4 2E-10 6.7E-15 116.6 26.1 233 354-592 107-368 (378)
78 3nf1_A KLC 1, kinesin light ch 99.4 3.3E-12 1.1E-16 125.5 12.5 132 209-340 27-180 (311)
79 4gyw_A UDP-N-acetylglucosamine 99.4 1.3E-11 4.6E-16 134.3 18.3 175 415-596 6-181 (723)
80 4gyw_A UDP-N-acetylglucosamine 99.3 3.9E-11 1.3E-15 130.6 21.2 165 383-553 9-173 (723)
81 3as5_A MAMA; tetratricopeptide 99.3 4.7E-10 1.6E-14 100.5 22.1 161 177-340 11-171 (186)
82 3mv2_B Coatomer subunit epsilo 99.3 2.6E-10 8.9E-15 108.9 21.1 266 322-613 22-306 (310)
83 1hz4_A MALT regulatory protein 99.3 1.5E-09 5.2E-14 109.8 28.1 269 353-621 19-324 (373)
84 3q15_A PSP28, response regulat 99.3 7.5E-10 2.6E-14 112.3 25.7 231 319-553 107-364 (378)
85 3qky_A Outer membrane assembly 99.3 6E-10 2E-14 106.5 21.4 67 529-597 152-232 (261)
86 4i17_A Hypothetical protein; T 99.2 2.3E-09 8E-14 100.0 23.0 194 348-554 7-209 (228)
87 2uy1_A Cleavage stimulation fa 99.2 1.9E-07 6.4E-12 97.5 38.4 403 154-617 11-450 (493)
88 3mv2_B Coatomer subunit epsilo 99.2 3.5E-09 1.2E-13 101.2 20.6 243 355-622 20-285 (310)
89 1qqe_A Vesicular transport pro 99.1 4.1E-10 1.4E-14 109.7 14.5 175 420-596 79-276 (292)
90 3edt_B KLC 2, kinesin light ch 99.1 3.7E-10 1.3E-14 109.0 13.7 230 359-589 12-281 (283)
91 3edt_B KLC 2, kinesin light ch 99.1 6.8E-10 2.3E-14 107.0 14.9 229 324-553 12-280 (283)
92 2fo7_A Synthetic consensus TPR 99.1 3.5E-09 1.2E-13 89.0 17.3 133 455-592 3-135 (136)
93 1qqe_A Vesicular transport pro 99.1 9.2E-10 3.1E-14 107.2 15.3 208 398-620 32-270 (292)
94 3urz_A Uncharacterized protein 99.1 1.3E-09 4.6E-14 100.1 15.2 127 459-593 60-190 (208)
95 2fo7_A Synthetic consensus TPR 99.1 7.2E-09 2.4E-13 87.1 17.4 130 140-272 3-132 (136)
96 4ga2_A E3 SUMO-protein ligase 99.0 2.2E-10 7.5E-15 99.2 6.8 134 459-598 3-138 (150)
97 2pzi_A Probable serine/threoni 99.0 1.2E-09 3.9E-14 119.6 13.3 173 394-575 402-583 (681)
98 3qky_A Outer membrane assembly 99.0 1.4E-08 4.9E-13 96.9 19.2 190 135-342 12-224 (261)
99 3urz_A Uncharacterized protein 99.0 1.5E-08 5.1E-13 93.0 17.8 192 139-356 5-198 (208)
100 3dra_A Protein farnesyltransfe 99.0 1.2E-07 4E-12 91.6 24.7 226 365-597 50-296 (306)
101 2vsy_A XCC0866; transferase, g 99.0 8.4E-09 2.9E-13 110.7 18.3 162 431-598 2-166 (568)
102 3dra_A Protein farnesyltransfe 99.0 3.9E-07 1.3E-11 87.9 26.7 222 150-376 45-286 (306)
103 2uy1_A Cleavage stimulation fa 98.9 2.8E-06 9.6E-11 88.6 34.5 369 138-553 15-412 (493)
104 2pzi_A Probable serine/threoni 98.9 7.6E-09 2.6E-13 113.1 15.5 173 359-540 402-583 (681)
105 2yhc_A BAMD, UPF0169 lipoprote 98.9 5.4E-08 1.8E-12 90.5 19.2 189 137-343 3-214 (225)
106 2yhc_A BAMD, UPF0169 lipoprote 98.9 3.7E-08 1.3E-12 91.6 17.9 62 386-447 7-70 (225)
107 3qou_A Protein YBBN; thioredox 98.9 2.8E-08 9.7E-13 96.2 17.3 161 419-587 118-282 (287)
108 2r5s_A Uncharacterized protein 98.9 2.4E-08 8.1E-13 88.9 15.2 162 141-306 9-172 (176)
109 3qou_A Protein YBBN; thioredox 98.9 5.6E-08 1.9E-12 94.1 18.2 167 135-305 114-282 (287)
110 2r5s_A Uncharacterized protein 98.9 2E-08 6.7E-13 89.4 13.9 162 421-588 9-172 (176)
111 4gco_A Protein STI-1; structur 98.9 2.7E-08 9.1E-13 82.9 13.2 107 490-598 13-119 (126)
112 4ga2_A E3 SUMO-protein ligase 98.9 7.8E-09 2.7E-13 89.3 9.2 82 214-296 36-117 (150)
113 2ifu_A Gamma-SNAP; membrane fu 98.8 2.2E-08 7.6E-13 98.1 13.2 199 326-552 4-222 (307)
114 2ifu_A Gamma-SNAP; membrane fu 98.8 8E-08 2.7E-12 94.1 16.8 166 427-594 45-228 (307)
115 2vsy_A XCC0866; transferase, g 98.8 9.6E-08 3.3E-12 102.4 18.5 154 151-308 2-158 (568)
116 2vgx_A Chaperone SYCD; alterna 98.8 2.3E-08 7.7E-13 86.1 11.0 117 475-596 9-125 (148)
117 3rjv_A Putative SEL1 repeat pr 98.8 7.1E-07 2.4E-11 81.9 21.6 129 347-482 17-158 (212)
118 3u3w_A Transcriptional activat 98.8 4.8E-06 1.7E-10 80.7 27.9 168 424-592 81-269 (293)
119 3rjv_A Putative SEL1 repeat pr 98.8 8.8E-07 3E-11 81.3 21.4 175 297-483 5-198 (212)
120 2c2l_A CHIP, carboxy terminus 98.8 3.4E-08 1.2E-12 95.3 11.8 191 417-619 3-199 (281)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3.1E-07 1.1E-11 84.3 17.5 128 459-593 12-154 (213)
122 3u3w_A Transcriptional activat 98.8 1.1E-06 3.9E-11 85.1 22.4 163 458-621 80-268 (293)
123 2qfc_A PLCR protein; TPR, HTH, 98.8 1E-06 3.5E-11 85.5 21.9 171 420-591 77-268 (293)
124 3dss_A Geranylgeranyl transfer 98.7 3.5E-06 1.2E-10 81.8 24.9 189 399-596 90-311 (331)
125 3q7a_A Farnesyltransferase alp 98.7 5.9E-06 2E-10 80.5 26.5 178 146-328 62-257 (349)
126 3gyz_A Chaperone protein IPGC; 98.7 1.1E-07 3.7E-12 81.7 12.0 103 489-594 35-138 (151)
127 2xcb_A PCRH, regulatory protei 98.7 1.4E-07 4.9E-12 80.3 12.7 107 489-597 17-123 (142)
128 1a17_A Serine/threonine protei 98.7 1.5E-06 5.3E-11 75.7 18.2 131 455-590 15-147 (166)
129 2e2e_A Formate-dependent nitri 98.7 1.4E-07 4.8E-12 83.8 11.6 125 466-595 23-150 (177)
130 3gw4_A Uncharacterized protein 98.7 3.2E-07 1.1E-11 83.4 13.9 165 429-594 3-181 (203)
131 1hh8_A P67PHOX, NCF-2, neutrop 98.7 2.7E-06 9.1E-11 77.9 20.2 126 178-307 10-150 (213)
132 1a17_A Serine/threonine protei 98.7 1E-06 3.5E-11 76.9 16.6 128 139-269 14-143 (166)
133 3q7a_A Farnesyltransferase alp 98.6 1.4E-05 4.8E-10 77.9 25.7 172 188-363 68-257 (349)
134 4gco_A Protein STI-1; structur 98.6 8.3E-07 2.9E-11 73.7 14.9 109 139-250 14-122 (126)
135 1p5q_A FKBP52, FK506-binding p 98.6 3.9E-07 1.3E-11 90.3 15.0 83 526-609 197-283 (336)
136 3gw4_A Uncharacterized protein 98.6 4E-07 1.4E-11 82.7 13.8 158 464-624 3-181 (203)
137 2hr2_A Hypothetical protein; a 98.6 9.1E-07 3.1E-11 75.2 14.7 105 493-597 14-139 (159)
138 1na0_A Designed protein CTPR3; 98.6 1.4E-06 4.8E-11 71.6 15.9 114 138-254 9-122 (125)
139 3gyz_A Chaperone protein IPGC; 98.6 4.6E-07 1.6E-11 77.8 12.7 94 177-271 39-132 (151)
140 3upv_A Heat shock protein STI1 98.6 6.4E-07 2.2E-11 74.4 13.2 101 490-592 4-104 (126)
141 2qfc_A PLCR protein; TPR, HTH, 98.6 7E-06 2.4E-10 79.5 22.6 131 140-270 77-223 (293)
142 4f3v_A ESX-1 secretion system 98.6 2.3E-06 7.8E-11 80.6 18.1 199 150-354 18-247 (282)
143 3dss_A Geranylgeranyl transfer 98.6 1.2E-05 4.2E-10 77.9 23.7 181 434-621 90-306 (331)
144 3q49_B STIP1 homology and U bo 98.6 2.6E-06 8.9E-11 71.6 16.9 108 487-596 6-113 (137)
145 2lni_A Stress-induced-phosphop 98.6 6.9E-07 2.4E-11 74.6 13.1 108 488-597 14-121 (133)
146 2lni_A Stress-induced-phosphop 98.6 9.1E-07 3.1E-11 73.8 13.8 120 135-257 13-132 (133)
147 4f3v_A ESX-1 secretion system 98.6 1.1E-06 3.7E-11 82.9 15.4 193 395-596 18-243 (282)
148 2e2e_A Formate-dependent nitri 98.6 6.8E-07 2.3E-11 79.3 13.2 121 429-554 21-144 (177)
149 1na0_A Designed protein CTPR3; 98.6 2.5E-06 8.7E-11 70.0 15.6 96 175-271 10-105 (125)
150 2vyi_A SGTA protein; chaperone 98.6 1.8E-06 6E-11 71.7 14.7 119 137-258 11-129 (131)
151 3sz7_A HSC70 cochaperone (SGT) 98.6 1.1E-06 3.8E-11 76.8 13.9 106 489-596 10-115 (164)
152 2vgx_A Chaperone SYCD; alterna 98.5 5.9E-07 2E-11 77.1 11.7 110 440-554 9-118 (148)
153 2c2l_A CHIP, carboxy terminus 98.5 5.2E-07 1.8E-11 86.9 12.3 95 138-235 4-98 (281)
154 2fbn_A 70 kDa peptidylprolyl i 98.5 1.5E-07 5E-12 85.5 6.8 118 492-610 40-176 (198)
155 1p5q_A FKBP52, FK506-binding p 98.5 3.5E-06 1.2E-10 83.4 17.1 134 453-592 147-297 (336)
156 1hxi_A PEX5, peroxisome target 98.5 1.4E-06 4.6E-11 71.8 11.8 100 493-595 20-120 (121)
157 2vyi_A SGTA protein; chaperone 98.5 4.1E-06 1.4E-10 69.4 15.1 114 177-292 15-128 (131)
158 2dba_A Smooth muscle cell asso 98.4 3.3E-06 1.1E-10 71.9 13.0 106 489-597 27-136 (148)
159 4gcn_A Protein STI-1; structur 98.4 1.4E-06 4.7E-11 72.5 10.0 100 492-592 10-115 (127)
160 1elw_A TPR1-domain of HOP; HOP 98.4 1.2E-05 4E-10 65.2 15.4 109 139-250 5-113 (118)
161 3upv_A Heat shock protein STI1 98.4 6E-06 2.1E-10 68.3 13.5 96 139-237 5-100 (126)
162 4gcn_A Protein STI-1; structur 98.4 5.9E-06 2E-10 68.6 13.3 105 455-564 10-120 (127)
163 2xev_A YBGF; tetratricopeptide 98.3 3.9E-06 1.3E-10 69.7 11.6 100 495-597 7-113 (129)
164 3sz7_A HSC70 cochaperone (SGT) 98.3 1.4E-05 4.6E-10 69.8 15.4 97 453-553 11-107 (164)
165 1hxi_A PEX5, peroxisome target 98.3 1.9E-06 6.5E-11 70.9 9.1 93 527-621 19-116 (121)
166 1elw_A TPR1-domain of HOP; HOP 98.3 2.4E-05 8.3E-10 63.2 15.5 93 212-305 7-99 (118)
167 2xcb_A PCRH, regulatory protei 98.3 6E-06 2E-10 70.1 12.0 97 210-307 19-115 (142)
168 4b4t_Q 26S proteasome regulato 98.3 3.1E-05 1.1E-09 79.5 19.5 189 427-616 13-242 (434)
169 3rkv_A Putative peptidylprolyl 98.3 5E-06 1.7E-10 72.4 11.4 102 493-595 14-132 (162)
170 1elr_A TPR2A-domain of HOP; HO 98.3 1E-05 3.4E-10 67.0 12.7 107 455-566 6-118 (131)
171 2fbn_A 70 kDa peptidylprolyl i 98.3 1.1E-05 3.7E-10 73.0 13.3 120 139-259 39-172 (198)
172 1dce_A Protein (RAB geranylger 98.3 2.3E-05 7.8E-10 83.1 17.6 170 433-608 44-244 (567)
173 3q49_B STIP1 homology and U bo 98.2 1.3E-05 4.5E-10 67.2 12.7 98 136-236 7-104 (137)
174 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 7.5E-06 2.6E-10 84.8 13.3 154 432-610 248-405 (457)
175 2if4_A ATFKBP42; FKBP-like, al 98.2 2.1E-06 7.1E-11 85.1 8.5 150 453-624 179-333 (338)
176 2kck_A TPR repeat; tetratricop 98.2 1.2E-05 4.2E-10 64.4 11.6 97 139-238 7-106 (112)
177 3ro3_A PINS homolog, G-protein 98.2 1.2E-05 3.9E-10 69.5 12.1 138 455-592 11-161 (164)
178 3k9i_A BH0479 protein; putativ 98.2 1.9E-06 6.4E-11 70.5 6.5 94 502-596 2-97 (117)
179 1wao_1 Serine/threonine protei 98.2 4.1E-06 1.4E-10 87.1 10.5 114 499-614 15-134 (477)
180 2kck_A TPR repeat; tetratricop 98.2 1.3E-05 4.6E-10 64.1 11.5 94 212-306 9-105 (112)
181 2dba_A Smooth muscle cell asso 98.2 3E-05 1E-09 65.8 14.3 114 135-251 25-141 (148)
182 1elr_A TPR2A-domain of HOP; HO 98.2 1.3E-05 4.4E-10 66.3 11.6 111 419-532 5-119 (131)
183 1ihg_A Cyclophilin 40; ppiase 98.2 9.3E-06 3.2E-10 81.3 12.3 136 453-612 223-363 (370)
184 3ro3_A PINS homolog, G-protein 98.2 1.4E-05 4.6E-10 69.0 11.2 131 491-621 10-160 (164)
185 2hr2_A Hypothetical protein; a 98.1 8.6E-06 2.9E-10 69.2 8.7 93 526-620 12-132 (159)
186 2if4_A ATFKBP42; FKBP-like, al 98.1 6.9E-06 2.4E-10 81.3 9.5 154 418-595 179-334 (338)
187 2xev_A YBGF; tetratricopeptide 98.1 7.8E-05 2.7E-09 61.6 14.7 104 143-247 7-114 (129)
188 4b4t_Q 26S proteasome regulato 98.1 8.5E-05 2.9E-09 76.2 18.0 160 145-304 11-201 (434)
189 1wao_1 Serine/threonine protei 98.1 1.9E-05 6.4E-10 82.1 13.0 117 428-549 16-134 (477)
190 1zu2_A Mitochondrial import re 98.0 2.5E-05 8.4E-10 66.2 9.5 90 502-594 14-125 (158)
191 3n71_A Histone lysine methyltr 98.0 6E-05 2.1E-09 77.8 14.4 94 527-620 353-465 (490)
192 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 8.3E-05 2.8E-09 76.9 15.0 138 138-298 268-405 (457)
193 3rkv_A Putative peptidylprolyl 98.0 9.1E-05 3.1E-09 64.2 12.8 103 455-560 13-130 (162)
194 1ihg_A Cyclophilin 40; ppiase 97.9 9.2E-05 3.1E-09 74.0 13.4 138 139-298 224-361 (370)
195 2kat_A Uncharacterized protein 97.9 0.00021 7.3E-09 57.6 13.1 86 508-595 3-88 (115)
196 3k9i_A BH0479 protein; putativ 97.9 2.8E-05 9.7E-10 63.2 7.4 84 432-518 4-89 (117)
197 1dce_A Protein (RAB geranylger 97.9 0.0008 2.7E-08 71.2 20.3 134 153-290 44-190 (567)
198 2l6j_A TPR repeat-containing p 97.9 6.5E-06 2.2E-10 66.1 3.1 90 525-615 4-103 (111)
199 3n71_A Histone lysine methyltr 97.7 0.00034 1.2E-08 72.3 13.4 132 462-593 318-468 (490)
200 1klx_A Cysteine rich protein B 97.7 0.00072 2.4E-08 56.7 13.2 110 468-590 10-127 (138)
201 2l6j_A TPR repeat-containing p 97.7 5.4E-05 1.9E-09 60.5 5.6 95 137-235 3-104 (111)
202 2kc7_A BFR218_protein; tetratr 97.7 0.00013 4.4E-09 57.0 7.7 82 532-619 7-90 (99)
203 3ma5_A Tetratricopeptide repea 97.6 0.00032 1.1E-08 55.0 9.3 72 524-596 6-77 (100)
204 1zu2_A Mitochondrial import re 97.6 0.00017 5.7E-09 61.1 7.6 92 466-563 15-127 (158)
205 2kat_A Uncharacterized protein 97.6 0.00035 1.2E-08 56.3 9.4 76 438-517 5-80 (115)
206 1pc2_A Mitochondria fission pr 97.5 0.0011 3.7E-08 55.5 11.6 109 506-629 14-127 (152)
207 1klx_A Cysteine rich protein B 97.5 0.0028 9.6E-08 53.0 14.3 108 259-377 11-126 (138)
208 1na3_A Designed protein CTPR2; 97.5 0.0013 4.3E-08 50.0 10.9 63 210-272 10-72 (91)
209 1na3_A Designed protein CTPR2; 97.4 0.002 6.9E-08 48.8 10.9 62 139-202 10-71 (91)
210 2kc7_A BFR218_protein; tetratr 97.3 0.00057 2E-08 53.2 7.5 89 496-595 6-96 (99)
211 3ly7_A Transcriptional activat 97.3 0.0013 4.4E-08 64.0 11.0 73 522-596 274-346 (372)
212 3ma5_A Tetratricopeptide repea 97.2 0.0018 6E-08 50.6 9.3 65 488-553 5-69 (100)
213 3qww_A SET and MYND domain-con 97.1 0.002 6.8E-08 65.3 9.9 64 526-589 341-411 (433)
214 3qwp_A SET and MYND domain-con 97.0 0.0048 1.6E-07 62.6 12.6 100 500-599 297-415 (429)
215 3ly7_A Transcriptional activat 96.9 0.014 4.7E-07 56.8 14.0 74 487-564 274-347 (372)
216 2v5f_A Prolyl 4-hydroxylase su 96.8 0.0039 1.3E-07 49.0 7.8 74 524-597 4-83 (104)
217 1nzn_A CGI-135 protein, fissio 96.8 0.017 5.8E-07 46.4 11.3 97 498-596 9-110 (126)
218 3u64_A Protein TP_0956; tetrat 96.7 0.063 2.1E-06 50.0 15.9 107 506-618 179-297 (301)
219 3mkq_A Coatomer beta'-subunit; 96.7 0.097 3.3E-06 58.1 20.8 46 323-374 662-707 (814)
220 3mkq_A Coatomer beta'-subunit; 96.6 0.13 4.5E-06 57.0 21.2 75 317-409 633-707 (814)
221 3qww_A SET and MYND domain-con 96.5 0.0077 2.6E-07 61.0 9.2 88 466-553 311-410 (433)
222 3qwp_A SET and MYND domain-con 96.4 0.016 5.4E-07 58.8 11.2 93 460-553 294-399 (429)
223 3bee_A Putative YFRE protein; 96.4 0.06 2.1E-06 41.0 11.5 68 415-483 3-73 (93)
224 4ady_A RPN2, 26S proteasome re 96.0 2.4 8.2E-05 46.6 29.5 256 323-587 384-656 (963)
225 3bee_A Putative YFRE protein; 95.8 0.059 2E-06 41.1 9.1 66 207-272 4-72 (93)
226 1pc2_A Mitochondria fission pr 95.6 0.092 3.2E-06 43.8 10.0 65 488-553 30-99 (152)
227 1y8m_A FIS1; mitochondria, unk 95.4 0.32 1.1E-05 39.6 12.4 99 522-633 36-137 (144)
228 4h7y_A Dual specificity protei 95.3 0.055 1.9E-06 44.5 7.4 108 488-597 11-131 (161)
229 3mkq_B Coatomer subunit alpha; 95.2 0.47 1.6E-05 40.6 13.3 103 217-339 13-115 (177)
230 3mkq_B Coatomer subunit alpha; 95.2 0.55 1.9E-05 40.2 13.7 27 382-408 33-59 (177)
231 3u64_A Protein TP_0956; tetrat 95.0 0.36 1.2E-05 45.0 13.0 85 469-557 179-272 (301)
232 3o48_A Mitochondria fission 1 94.8 0.27 9.3E-06 39.5 10.1 88 521-623 36-128 (134)
233 2v5f_A Prolyl 4-hydroxylase su 94.7 0.24 8E-06 38.5 9.7 33 210-242 47-79 (104)
234 1wy6_A Hypothetical protein ST 94.0 2 6.8E-05 34.6 15.9 62 281-343 94-155 (172)
235 4ady_A RPN2, 26S proteasome re 94.0 9.1 0.00031 42.2 31.6 269 287-570 383-671 (963)
236 1wy6_A Hypothetical protein ST 94.0 2 6.9E-05 34.6 16.3 139 150-310 19-157 (172)
237 4h7y_A Dual specificity protei 93.7 0.97 3.3E-05 37.2 11.1 105 450-558 10-127 (161)
238 1nzn_A CGI-135 protein, fissio 93.5 0.65 2.2E-05 37.2 9.9 81 435-519 18-103 (126)
239 4gns_B Protein CSD3, chitin bi 90.2 1 3.4E-05 48.6 9.7 129 141-270 251-398 (754)
240 4b4t_P 26S proteasome regulato 90.2 17 0.00057 36.7 20.1 98 456-553 140-246 (445)
241 4b4t_P 26S proteasome regulato 90.1 17 0.00058 36.6 22.3 50 152-201 30-83 (445)
242 4gns_B Protein CSD3, chitin bi 89.4 4.2 0.00014 43.8 13.7 65 522-588 610-683 (754)
243 1qsa_A Protein (soluble lytic 89.0 25 0.00086 37.0 31.8 268 124-411 58-347 (618)
244 2ff4_A Probable regulatory pro 89.0 1.6 5.6E-05 43.2 9.7 70 212-281 174-248 (388)
245 2wpv_A GET4, UPF0363 protein Y 87.9 18 0.00063 34.1 18.4 80 347-445 133-215 (312)
246 4fhn_B Nucleoporin NUP120; pro 87.4 10 0.00036 43.5 16.4 149 214-369 817-992 (1139)
247 2ff4_A Probable regulatory pro 86.2 4.8 0.00016 39.8 11.2 54 497-551 178-231 (388)
248 1v54_E Cytochrome C oxidase po 85.9 4.3 0.00015 30.7 7.7 63 258-321 25-87 (109)
249 4fhn_B Nucleoporin NUP120; pro 85.6 25 0.00084 40.5 18.2 150 246-402 815-990 (1139)
250 3lvg_A Clathrin heavy chain 1; 85.5 8.5E-06 2.9E-10 80.4 -29.7 229 314-581 55-283 (624)
251 1v54_E Cytochrome C oxidase po 85.2 4.5 0.00015 30.6 7.6 63 189-251 25-87 (109)
252 3lvg_A Clathrin heavy chain 1; 84.7 0.00035 1.2E-08 69.2 -18.9 173 417-615 82-254 (624)
253 3ffl_A Anaphase-promoting comp 84.2 9.4 0.00032 32.0 10.1 57 496-552 26-90 (167)
254 3o48_A Mitochondria fission 1 84.0 9 0.00031 30.8 9.5 72 487-560 37-111 (134)
255 3ffl_A Anaphase-promoting comp 81.3 17 0.0006 30.4 10.6 56 145-200 27-89 (167)
256 1zbp_A Hypothetical protein VP 81.2 5.8 0.0002 36.3 8.4 122 461-597 5-137 (273)
257 2wpv_A GET4, UPF0363 protein Y 80.5 39 0.0013 31.9 19.5 165 213-410 37-215 (312)
258 2y69_E Cytochrome C oxidase su 80.1 9.8 0.00034 30.5 8.1 61 260-321 70-130 (152)
259 2y69_E Cytochrome C oxidase su 78.7 11 0.00039 30.1 8.1 61 191-251 70-130 (152)
260 3mv2_A Coatomer subunit alpha; 76.3 7.5 0.00026 36.6 7.7 52 541-592 186-239 (325)
261 1zbp_A Hypothetical protein VP 75.1 15 0.00051 33.7 9.1 61 534-596 6-67 (273)
262 4b4t_R RPN7, 26S proteasome re 74.0 20 0.00069 35.8 11.0 62 420-481 133-196 (429)
263 3lpz_A GET4 (YOR164C homolog); 73.8 63 0.0022 30.7 22.5 80 347-445 135-214 (336)
264 3txn_A 26S proteasome regulato 73.4 72 0.0025 31.2 20.4 92 283-374 104-207 (394)
265 1y8m_A FIS1; mitochondria, unk 72.6 37 0.0013 27.6 13.0 70 488-559 37-109 (144)
266 2p58_C Putative type III secre 71.9 21 0.00072 26.9 7.5 77 293-377 22-98 (116)
267 2p58_C Putative type III secre 70.7 32 0.0011 26.0 8.6 79 467-555 21-99 (116)
268 2uwj_G Type III export protein 68.8 20 0.00069 26.9 6.8 78 293-378 21-98 (115)
269 3lpz_A GET4 (YOR164C homolog); 68.8 82 0.0028 30.0 28.1 26 451-476 134-159 (336)
270 4b4t_R RPN7, 26S proteasome re 66.4 49 0.0017 33.0 11.9 60 245-304 133-194 (429)
271 2uwj_G Type III export protein 65.3 30 0.001 26.0 7.2 79 188-273 20-98 (115)
272 3mkr_B Coatomer subunit alpha; 64.2 86 0.0029 29.5 12.0 39 554-592 190-230 (320)
273 3esl_A Checkpoint serine/threo 63.8 65 0.0022 28.0 10.3 55 468-523 94-148 (202)
274 1qsa_A Protein (soluble lytic 60.8 1.7E+02 0.0057 30.7 36.1 77 178-259 76-152 (618)
275 3ltm_A Alpha-REP4; protein eng 53.6 1.1E+02 0.0037 26.4 18.4 18 276-293 93-110 (211)
276 3eiq_C Programmed cell death p 48.7 1.9E+02 0.0065 27.8 14.2 65 316-381 220-286 (358)
277 1wdy_A 2-5A-dependent ribonucl 46.8 41 0.0014 30.6 7.1 14 218-231 45-58 (285)
278 3ltj_A Alpharep-4; protein eng 46.8 1.3E+02 0.0046 25.5 19.4 18 276-293 88-105 (201)
279 2r9g_A AAA ATPase, central reg 45.8 1.5E+02 0.005 25.7 10.4 37 360-397 26-62 (204)
280 3esl_A Checkpoint serine/threo 44.5 1.6E+02 0.0054 25.6 11.1 52 225-276 95-148 (202)
281 1wdy_A 2-5A-dependent ribonucl 44.1 37 0.0013 31.0 6.3 19 215-233 8-26 (285)
282 4a1g_A Mitotic checkpoint seri 43.9 1.3E+02 0.0046 24.6 9.9 51 472-523 84-134 (152)
283 2wvi_A Mitotic checkpoint seri 43.1 91 0.0031 26.0 7.7 50 509-558 79-129 (164)
284 2rg8_A Programmed cell death p 41.6 84 0.0029 26.3 7.4 12 622-633 154-165 (165)
285 2d2s_A Exocyst complex compone 41.1 87 0.003 28.1 7.9 90 144-236 24-118 (235)
286 3ltm_A Alpha-REP4; protein eng 40.1 1.8E+02 0.006 24.9 18.9 123 207-341 62-184 (211)
287 3bge_A Predicted ATPase; struc 39.0 1.8E+02 0.0061 25.1 8.8 36 360-395 19-54 (201)
288 2ion_A PDCD4, programmed cell 38.7 1.5E+02 0.0052 24.3 8.4 23 213-235 13-35 (152)
289 2zu6_B Programmed cell death p 38.4 2.5E+02 0.0086 26.2 12.7 66 316-382 169-236 (307)
290 4gq2_M Nucleoporin NUP120; bet 38.3 3.6E+02 0.012 30.1 14.0 108 215-327 816-950 (950)
291 2d2s_A Exocyst complex compone 38.3 1.4E+02 0.0048 26.7 8.7 23 180-202 24-46 (235)
292 3pvs_A Replication-associated 37.3 3.2E+02 0.011 27.1 13.0 34 360-393 267-300 (447)
293 2nsz_A Programmed cell death p 36.3 1.6E+02 0.0055 23.3 9.7 22 214-235 12-33 (129)
294 4aez_C MAD3, mitotic spindle c 34.3 99 0.0034 27.3 6.8 27 493-519 153-179 (223)
295 3ctd_A Putative ATPase, AAA fa 33.1 2.5E+02 0.0084 24.5 9.5 38 360-397 47-84 (213)
296 3eu9_A Huntingtin-interacting 32.0 41 0.0014 29.7 4.3 18 216-233 46-63 (240)
297 2zu6_B Programmed cell death p 30.9 1.4E+02 0.0049 27.9 7.9 67 493-560 169-237 (307)
298 1bpo_A Protein (clathrin); cla 30.5 4.2E+02 0.014 26.4 12.8 83 212-295 364-446 (494)
299 4b4t_S RPN3, 26S proteasome re 29.6 4.6E+02 0.016 26.6 11.8 64 419-482 232-299 (523)
300 4b4t_S RPN3, 26S proteasome re 29.1 4.7E+02 0.016 26.5 11.9 64 209-272 231-299 (523)
301 3eiq_C Programmed cell death p 27.8 4.1E+02 0.014 25.4 13.9 66 351-417 220-287 (358)
302 1k1a_A B-cell lymphoma 3-encod 27.8 1.2E+02 0.0042 26.5 6.8 21 253-273 16-36 (241)
303 2qx5_A Nucleoporin NIC96; mRNA 27.3 5.7E+02 0.019 26.9 23.9 42 214-255 157-198 (661)
304 2qx5_A Nucleoporin NIC96; mRNA 27.2 5.7E+02 0.02 26.9 14.4 44 140-186 155-198 (661)
305 3ltj_A Alpharep-4; protein eng 27.0 2.8E+02 0.0096 23.3 18.8 90 242-340 89-178 (201)
306 2nsz_A Programmed cell death p 26.8 2.3E+02 0.008 22.3 8.6 23 494-516 11-33 (129)
307 3ubw_A 14-3-3E, 14-3-3 protein 26.6 3.6E+02 0.012 24.4 11.2 49 542-590 173-229 (261)
308 2rpa_A Katanin P60 ATPase-cont 25.9 1.1E+02 0.0038 21.8 4.6 48 564-611 16-63 (78)
309 3kea_A K1L; tropism, ANK repea 25.3 87 0.003 28.8 5.4 14 185-198 39-52 (285)
310 2ion_A PDCD4, programmed cell 24.6 1.3E+02 0.0045 24.7 5.7 24 317-340 13-36 (152)
311 3kae_A CDC27, possible protein 24.4 3.2E+02 0.011 23.0 11.7 20 500-519 72-91 (242)
312 3txn_A 26S proteasome regulato 24.4 5E+02 0.017 25.2 28.9 93 248-340 104-208 (394)
313 1wgl_A TOLL-interacting protei 23.6 1.1E+02 0.0036 20.5 3.9 48 155-208 10-57 (59)
314 3lxu_X Tripeptidyl-peptidase 2 23.3 8.5E+02 0.029 28.2 13.4 144 216-362 1115-1331(1354)
315 4a1g_A Mitotic checkpoint seri 23.3 3.1E+02 0.011 22.5 10.5 31 245-275 103-133 (152)
316 3l6a_A Eukaryotic translation 23.0 5E+02 0.017 24.8 10.8 26 280-305 14-39 (364)
317 4aez_C MAD3, mitotic spindle c 23.0 1.4E+02 0.0049 26.3 5.8 52 507-558 131-183 (223)
318 1k1a_A B-cell lymphoma 3-encod 22.8 1.4E+02 0.0047 26.1 6.2 22 183-204 15-36 (241)
319 3kea_A K1L; tropism, ANK repea 22.1 1.6E+02 0.0056 26.8 6.7 86 497-592 165-250 (285)
320 3t8k_A Uncharacterized protein 21.3 1.7E+02 0.0059 24.6 6.2 13 368-380 94-106 (186)
321 3bu8_A Telomeric repeat-bindin 20.4 3.4E+02 0.012 23.8 7.3 68 434-505 88-162 (235)
322 2fe3_A Peroxide operon regulat 20.3 3.4E+02 0.012 21.8 7.6 58 269-327 13-70 (145)
323 1ug3_A EIF4GI, eukaryotic prot 20.3 1.1E+02 0.0039 29.1 5.2 25 316-340 14-38 (339)
324 3myf_A Sensor protein; HPT, hi 20.1 1.1E+02 0.0036 23.9 4.1 44 538-586 16-59 (119)
325 2dl1_A Spartin; SPG20, MIT, st 20.0 3.1E+02 0.011 21.2 7.1 51 573-623 35-87 (116)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-42 Score=376.63 Aligned_cols=473 Identities=9% Similarity=-0.003 Sum_probs=347.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHH
Q 006630 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGC 214 (638)
Q Consensus 135 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ 214 (638)
.+++..|+.++..|.+.|++++|+.+|++|....| +..++..++.+|.+.|++++|+.+|+.+... +++..+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 155 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITG---NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYL 155 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCC---CchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHH
Confidence 36788999999999999999999999999987654 6688899999999999999999999998654 789999999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhccC----------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006630 215 LLDALCKNSSVKEAAKLFDEMRERF----------------KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDI 278 (638)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~~~~~~----------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 278 (638)
++.+|.+.|++++|.++|+++.... +++..+|+.++.+|.+.|++++|.++|++|.+.+ +.+.
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~ 234 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCY 234 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhh
Confidence 9999999999999999999643221 3458999999999999999999999999999875 3345
Q ss_pred HHHHHHHHHHHHcCCHhH--HHHH-HHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006630 279 VVYNNLLSGYAQMGKMTD--AFEL-LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355 (638)
Q Consensus 279 ~~~~~ll~~~~~~g~~~~--a~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 355 (638)
..+..+...+...+..+. +..+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+|+.++
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 312 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKA 312 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHH
Confidence 555555544332222111 1111 334444444444555666677777777777777777777654 46777777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 006630 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435 (638)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 435 (638)
.+|.+.|++++|+++|+++.+.+.. +..++..++.++.+.|++++|.++++.+.+.. +.+..+++.++.+|.+.|+++
T Consensus 313 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 390 (597)
T 2xpi_A 313 DTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKIS 390 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHH
Confidence 7777777777777777777765433 55667777777777777777777777776543 556677777777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006630 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515 (638)
Q Consensus 436 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 515 (638)
+|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|++
T Consensus 391 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 391 EARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF---QGTHLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---TTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777776654 4456677777777777777777777777777665 34566777777777777777777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 006630 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA----DVMPQ--PDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589 (638)
Q Consensus 516 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 589 (638)
+.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.+.|++++|+++++++++.
T Consensus 467 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 467 SYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 76653 235677777777777777777777777777654 55666 567777777777777777777777777777
Q ss_pred HHhccccc----chhhhhhhhhhHHHHHhhhhhhhhh
Q 006630 590 AAERQITF----KMYKRRGERDLKEKAKKQVDGRKRR 622 (638)
Q Consensus 590 ~p~~~~~~----~~y~~~g~~~~A~~~~~~~~~~~~~ 622 (638)
+|+++..+ .+|.+.|++++|.+.++++.+..+.
T Consensus 546 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 546 STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 77766554 5677777777777777776655443
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-40 Score=361.49 Aligned_cols=481 Identities=8% Similarity=-0.008 Sum_probs=416.1
Q ss_pred ChhHHHHHHHHhccCchhHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 006630 103 RPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMR 182 (638)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 182 (638)
+...+..++..|.+.|+...+...+.... +..|+..++..++.+|.+.|++++|..+|+.+... ..+..+++.++.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~ 158 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVL-DITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAF 158 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHH-hhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHH
Confidence 34456778888989998877665554332 23467789999999999999999999999988654 247889999999
Q ss_pred HHHhcCCHHHHHHHHHhch-hC--------------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHH
Q 006630 183 RFASARMVKKAIEVLDEMP-KY--------------GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFT 247 (638)
Q Consensus 183 ~~~~~~~~~~A~~~~~~m~-~~--------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 247 (638)
+|.+.|++++|+++|+++. .. |.+++..+|+.++.+|.+.|++++|.++|+++.+..+.+...+.
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 238 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFD 238 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHH
Confidence 9999999999999999543 22 33456899999999999999999999999999887777888888
Q ss_pred HHHHHHHhcCCHHHHHH--H-HHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 006630 248 SLLYGWCKEGKLVEAKY--V-LVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALC 324 (638)
Q Consensus 248 ~li~~~~~~g~~~~A~~--~-~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 324 (638)
.+...+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+++.++.+|.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHH
Confidence 88877665544333222 1 555665555556677888899999999999999999999876 579999999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006630 325 RMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404 (638)
Q Consensus 325 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 404 (638)
+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|.+
T Consensus 317 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence 9999999999999999875 4478889999999999999999999999999754 3478899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006630 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484 (638)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 484 (638)
+|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|+.++.+|.+.|++++|+++|+++.+..
T Consensus 395 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 471 (597)
T 2xpi_A 395 YFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF- 471 (597)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 999998764 5678899999999999999999999999999876 6688999999999999999999999999999876
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 006630 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK----GCELN--VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558 (638)
Q Consensus 485 ~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 558 (638)
+.+..+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++++.+ ..
T Consensus 472 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~ 548 (597)
T 2xpi_A 472 --QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TN 548 (597)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SC
T ss_pred --CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC
Confidence 467889999999999999999999999999876 66777 7899999999999999999999999998764 44
Q ss_pred CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 559 QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 559 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
+..+|..+..+|...|++++|.+.++++++++|+++..+
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 587 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMAS 587 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHH
Confidence 788999999999999999999999999999999998775
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=4.2e-28 Score=249.01 Aligned_cols=379 Identities=13% Similarity=0.067 Sum_probs=235.5
Q ss_pred HHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHH
Q 006630 183 RFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEA 262 (638)
Q Consensus 183 ~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 262 (638)
.+.+.|++++|++.++.+.+.. +.+...+..+...+...|++++|...++......|.+..+|..+...|.+.|++++|
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 3444555555555555554432 233344445555555556666666555555555555555666666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006630 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342 (638)
Q Consensus 263 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (638)
.+.|+++.+.. +.+..+|..+..++...|++++|.+.++++.+... .+...+..+...+...|++++|.+.|+++.+.
T Consensus 87 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 66666655542 22344555666666666666666666666555421 13344555555666666666666666666554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006630 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422 (638)
Q Consensus 343 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 422 (638)
. +.+..+|..+...|...|++++|+..|+++.+.+.. +...+..+...+...|++++|...+.+..+.. +.+..++.
T Consensus 165 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 241 (388)
T 1w3b_A 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHH
Confidence 2 224556666666666666666666666666654322 45556666666666666677766666666543 34566667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHH
Q 006630 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502 (638)
Q Consensus 423 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~ 502 (638)
.+...|.+.|++++|...|+++.+.+ +.+..+|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+..
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC---PTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cccHHHHHHHHHHHHH
Confidence 77777777777777777777777654 4456677777777777777777777777777665 4566677777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhc
Q 006630 503 AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLY 574 (638)
Q Consensus 503 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g 574 (638)
.|++++|...++++.+.. +.+...|..++.+|.+.|++++|+..|+++++. .|+ ...|..+...+...|
T Consensus 318 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 777777777777776652 234667777777777888888888888777753 443 556777776666555
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=4.8e-28 Score=248.56 Aligned_cols=380 Identities=12% Similarity=0.045 Sum_probs=206.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCC
Q 006630 145 IKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS 224 (638)
Q Consensus 145 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 224 (638)
...+.+.|++++|...++.+....|. +...+..+...+...|++++|...++...+.. +.+..+|..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPD--NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 34445556666666666555555443 44445555555555566666665555555432 3445555566666666666
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 006630 225 VKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304 (638)
Q Consensus 225 ~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 304 (638)
+++|...|+++....|.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666655555445555555566666666666666666665555542 222334445555555556666666666555
Q ss_pred HHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006630 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384 (638)
Q Consensus 305 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 384 (638)
.+.. +.+..+|..+...|.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|+..|++....... +..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHH
Confidence 5542 1234555555555666666666666666555543 223455555555555566666666665555553221 345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006630 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464 (638)
Q Consensus 385 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 464 (638)
++..+...+...|++++|.+.++++.+.+ +.+..++..+...|.+.|++++|...|+++.+.. +.+..+|..+...+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 55555555556666666666665555543 3344555555555666666666666666555543 445555555556666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 006630 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537 (638)
Q Consensus 465 ~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 537 (638)
..|++++|+..|+++.+.. +.+..++..+...+.+.|++++|...|+++++.. +.+...|..+...+..
T Consensus 317 ~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKE 385 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSC---TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHH
Confidence 6666666666666555543 2344555555555556666666666666555431 1134444444444443
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2e-29 Score=263.56 Aligned_cols=186 Identities=17% Similarity=0.272 Sum_probs=112.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---------HhHHHHHHHHHHHcCCCCCHHh
Q 006630 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK---------MTDAFELLKEMRRKGCDPNANS 315 (638)
Q Consensus 245 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---------~~~a~~~~~~~~~~g~~~~~~~ 315 (638)
.++.+|.+|++.|++++|+++|++|.+.|+.||..|||.||.+|++.+. ++.|.++|++|.+.|+.||..|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4566666666666666666666666666666666666666666665443 4555555666655555556666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006630 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395 (638)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 395 (638)
|++||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 66666666666666666666666555555556666666666565556555665555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006630 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430 (638)
Q Consensus 396 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 430 (638)
.|++++|.+++++|.+.+..|+..||+.++..|+.
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 55555555555555555555555555555555543
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2e-29 Score=263.56 Aligned_cols=206 Identities=19% Similarity=0.216 Sum_probs=174.7
Q ss_pred HHHHHHHHhchhCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHhcCC---------H
Q 006630 191 KKAIEVLDEMPKYGCEPDE-FVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGK---------L 259 (638)
Q Consensus 191 ~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~---------~ 259 (638)
..+..+.+.+.+.+..+.+ .+++.+|++|++.|++++|.++|++|.+ ++.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 4455666777777766554 4688899999999999999999999975 689999999999999987665 6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006630 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM 339 (638)
Q Consensus 260 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 339 (638)
++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006630 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396 (638)
Q Consensus 340 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 396 (638)
.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..++..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999888764
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7e-26 Score=241.42 Aligned_cols=451 Identities=9% Similarity=-0.034 Sum_probs=335.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 006630 138 YDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217 (638)
Q Consensus 138 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 217 (638)
...|..+...+.+.|++++|+..|+++...+| +..++..+..++...|++++|+..++++.+.+ +.+..++..+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE---DPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc---cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 34566777888888999999999988888764 67788888888888899999999888888764 456678888888
Q ss_pred HHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHH
Q 006630 218 ALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297 (638)
Q Consensus 218 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 297 (638)
+|.+.|++++|...|+++....+++......++..+........+.+.+..+...+..|+...+..-.............
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 88888999999888888877666666666666666665555555555554443333223222222111111111111111
Q ss_pred HHHHHHHHHcCC---------CCCHHhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----cCC--------CCCHHHHH
Q 006630 298 FELLKEMRRKGC---------DPNANSYTVLIQALCR---MEKMEEANRAFVEMER-----SGC--------EADVVTYT 352 (638)
Q Consensus 298 ~~~~~~~~~~g~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~~~~~~~~ 352 (638)
..+...+..... +.+...+......+.. .|++++|..+|+++.+ ..- +.+..+|.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 111111111111 1124445555555554 8999999999999887 211 22356788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 006630 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432 (638)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 432 (638)
.+...+...|++++|+..|+++.+.... ..++..+...+...|++++|...++.+.+.. +.+...+..+...|...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 8899999999999999999999987544 8888889999999999999999999998764 557788999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 006630 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDV 512 (638)
Q Consensus 433 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 512 (638)
++++|...|+++.+.. +.+...+..+...+...|++++|+.+|+++.... +.+..++..+...+...|++++|...
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF---PEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS---TTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc---ccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999876 5577899999999999999999999999999875 34567888899999999999999999
Q ss_pred HHHHHHcCC-CCC----HHHHHHHHHHHHc---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHH
Q 006630 513 WSCIVTKGC-ELN----VYAWTIWIHSLFS---NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584 (638)
Q Consensus 513 ~~~~~~~~~-~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~ 584 (638)
++++.+... .++ ...|..+..++.. .|++++|...++++++.. ..+..++..+...+...|++++|...++
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999987621 122 4488999999999 999999999999998753 3357788899999999999999999999
Q ss_pred HHHHHHHhcccccchh
Q 006630 585 KVRKMAAERQITFKMY 600 (638)
Q Consensus 585 ~~~~~~p~~~~~~~~y 600 (638)
++++++|+++..+..+
T Consensus 474 ~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 474 ESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHCSSHHHHHHHH
T ss_pred HHHHhccccHHHHHHH
Confidence 9999999988876443
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2e-25 Score=237.81 Aligned_cols=439 Identities=11% Similarity=-0.002 Sum_probs=331.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 006630 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGW 253 (638)
Q Consensus 174 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 253 (638)
...+......+.+.|++++|+..|+++.+.+ |+..++..+..+|.+.|++++|...|+++.+..|.+..+|..+..+|
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 3456667888899999999999999998874 79999999999999999999999999999887788899999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 006630 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333 (638)
Q Consensus 254 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 333 (638)
.+.|++++|...|+++...+ +++......++..+........+.+.+..+...+..|+...+..-..............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 99999999999999999876 44555555566655554444444444443333322222221111111111111111111
Q ss_pred HHHHHHHHcCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCCCC--------CHHHHHH
Q 006630 334 RAFVEMERSGC---------EADVVTYTTLISGFCK---SRKIDRCYEILDSMIQ-----RGILP--------NQLTYLH 388 (638)
Q Consensus 334 ~~~~~m~~~g~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~~p--------~~~t~~~ 388 (638)
.+...+..... +.+...+..+...+.. .|++++|+.+|+++.+ ....| +..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 11111111110 1124455555555554 8999999999999988 31112 3457778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006630 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468 (638)
Q Consensus 389 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 468 (638)
+...+...|++++|..+++.+.+.. |+...+..+...|...|++++|...|+++.+.. +.+...|..+...+...|+
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCC
Confidence 8889999999999999999998875 338888999999999999999999999999875 5677899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006630 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548 (638)
Q Consensus 469 ~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 548 (638)
+++|+..|+++.... +.+..++..+...+...|++++|...++++.+.. +.+...|..+...+...|++++|...+
T Consensus 320 ~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 320 YDQAGKDFDKAKELD---PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TTHHHHHHHHHHHTC---SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC---hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999876 3456688888999999999999999999998863 336788999999999999999999999
Q ss_pred HHHHhCC-CCCC----HHHHHHHHHHHHh---hcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhHHHHHhhh
Q 006630 549 LDMMDAD-VMPQ----PDTFAKLMRGLKK---LYNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLKEKAKKQV 616 (638)
Q Consensus 549 ~~m~~~~-~~p~----~~t~~~ll~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~~~~~~~ 616 (638)
+++++.. -.|+ ...|..+...+.. .|++++|...++++++.+|+++..+ .+|...|++++|.+.+++.
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9987631 1222 3478899999999 9999999999999999999988764 6899999999999999997
Q ss_pred hhhhhh
Q 006630 617 DGRKRR 622 (638)
Q Consensus 617 ~~~~~~ 622 (638)
.+..+.
T Consensus 476 ~~~~~~ 481 (514)
T 2gw1_A 476 ADLART 481 (514)
T ss_dssp HHHCSS
T ss_pred HHhccc
Confidence 666554
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=6.5e-24 Score=227.62 Aligned_cols=438 Identities=10% Similarity=0.014 Sum_probs=336.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 006630 138 YDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217 (638)
Q Consensus 138 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 217 (638)
...|..+...+.+.|++++|+..|+++...+|. +..++..+..++...|++++|++.|+++.+.+ +.+..++..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN--EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC--CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 456778889999999999999999999998875 78899999999999999999999999998875 567889999999
Q ss_pred HHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHc
Q 006630 218 ALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA------GFEPDIVVYNNLLSGYAQM 291 (638)
Q Consensus 218 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~ 291 (638)
+|...|++++|...|+.+.. +....+..+..+...+...+|...++++... ...|+.. .+..+...
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~ 173 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSL----NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT----SLASFFGI 173 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH----HHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHhc----CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh----HHHHHHHh
Confidence 99999999999999974432 2222333455666677778899999998653 1233333 33445555
Q ss_pred CCHhHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCC--------HHHHHHH
Q 006630 292 GKMTDAFELLKEMRRKGCDPNA-NSYTVLIQALCR--------MEKMEEANRAFVEMERSGCEAD--------VVTYTTL 354 (638)
Q Consensus 292 g~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~~~--------~~~~~~l 354 (638)
.+.+.+...+..... ..+.. .....+...+.. .|++++|..+|+++.+. .|+ ..++..+
T Consensus 174 ~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~ 249 (537)
T 3fp2_A 174 FDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYT 249 (537)
T ss_dssp SCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHH
Confidence 666655544433222 12221 123333333222 25789999999999876 343 2356677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006630 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434 (638)
Q Consensus 355 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 434 (638)
...+...|++++|+..|+++.+.. |+..++..+...+...|++++|.+.++.+.+.. +.+..++..+...|...|++
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCH
Confidence 788889999999999999999864 557888889999999999999999999998865 56788899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006630 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514 (638)
Q Consensus 435 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 514 (638)
++|...|+++.+.+ +.+...|..+...+...|++++|+.+|+++.+.. +.+..++..+...+...|++++|...|+
T Consensus 327 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 327 KNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF---PTLPEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999998875 5567899999999999999999999999999876 3556688889999999999999999999
Q ss_pred HHHHcC-----CCCCHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHH
Q 006630 515 CIVTKG-----CELNVYAWTIWIHSLFSN----------GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIA 579 (638)
Q Consensus 515 ~~~~~~-----~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A 579 (638)
++.+.. .......+.....++... |++++|+..|+++++.. ..+...+..+...+...|++++|
T Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp HHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 987752 111223345556777777 99999999999998752 34577899999999999999999
Q ss_pred HHHHHHHHHHHHhcccccc
Q 006630 580 AEITEKVRKMAAERQITFK 598 (638)
Q Consensus 580 ~~~~~~~~~~~p~~~~~~~ 598 (638)
.+.+++++++.|+++....
T Consensus 482 ~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 482 IELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHH
Confidence 9999999999999887753
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=4.1e-23 Score=216.16 Aligned_cols=319 Identities=11% Similarity=0.035 Sum_probs=222.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHH
Q 006630 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVF 212 (638)
Q Consensus 133 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~ 212 (638)
..+.+..+|..++..|.+.|++++|+.+|+++....|. +..++..+..++...|++++|+..|+++.+.+ +.+..++
T Consensus 21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 97 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD--NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAAR 97 (450)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHH
Confidence 33567788999999999999999999999999988764 78889999999999999999999999998875 4567889
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhccCCCCH---HHHHHHHHH------------HHhcCCHHHHHHHHHHHHHCCCCCC
Q 006630 213 GCLLDALCKNSSVKEAAKLFDEMRERFKPSL---RHFTSLLYG------------WCKEGKLVEAKYVLVQMKDAGFEPD 277 (638)
Q Consensus 213 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~li~~------------~~~~g~~~~A~~~~~~m~~~g~~p~ 277 (638)
..+..+|.+.|++++|...|+++....+.+. ..|..++.. +...|++++|...|+++.+.. +.+
T Consensus 98 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~ 176 (450)
T 2y4t_A 98 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWD 176 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 9999999999999999999999988766666 777766544 777777777777777777654 446
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH---
Q 006630 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL--- 354 (638)
Q Consensus 278 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l--- 354 (638)
..++..+..+|...|++++|.+.++++.+.. +.+..++..+...|...|++++|...|+++.... +.+...+..+
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~ 254 (450)
T 2y4t_A 177 AELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV 254 (450)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHH
Confidence 6677777777777777777777777776652 3356677777777777777777777777776552 2233444333
Q ss_pred ---------HHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006630 355 ---------ISGFCKSRKIDRCYEILDSMIQRGILPN----QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNY 421 (638)
Q Consensus 355 ---------i~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 421 (638)
...|.+.|++++|+..|+++.+.... + ...+..+...+.+.|++++|...++.+.+.. +.+...+
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~ 332 (450)
T 2y4t_A 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHH
Confidence 55566666666666666666553211 1 2345555555666666666666666655442 3345555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006630 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460 (638)
Q Consensus 422 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 460 (638)
..+..+|.+.|++++|...|+++.+.. +.+...+..+.
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 370 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 566666666666666666666665543 22334444333
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=4.3e-23 Score=216.00 Aligned_cols=314 Identities=11% Similarity=0.015 Sum_probs=168.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 006630 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYG 252 (638)
Q Consensus 173 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~ 252 (638)
+...+..+...+.+.|++++|+.+|+.+.+.. +.+..++..+..+|...|++++|...|+++.+..|.+..+|..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 44555555555666666666666666555432 33455555566666666666666666666555445555556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH
Q 006630 253 WCKEGKLVEAKYVLVQMKDAGFEPDI---VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKM 329 (638)
Q Consensus 253 ~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 329 (638)
|.+.|++++|.+.|+++.+.. +.+. ..+..++..+... .+..+...+.+.|++
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTCH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCCH
Confidence 666666666666666655442 1122 3444443320000 011112234455555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006630 330 EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409 (638)
Q Consensus 330 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 409 (638)
++|...|+++.+.. +.+...+..+...|.+.|++++|+..|+++.+... .+..++..+...+...|++++|...++.+
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555432 23445555555555555555555555555544321 23445555555555555555555555555
Q ss_pred HHCCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHH
Q 006630 410 RKIGCVPDVSNYNVV------------IRLACKLGELKEAVNVWNEMEAASLSPG-----TDSFVVMVHGFLGQGCLIEA 472 (638)
Q Consensus 410 ~~~~~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~A 472 (638)
.+.. +.+...+..+ ...|.+.|++++|...|+++.+.. |+ ...|..+...+.+.|++++|
T Consensus 238 ~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 238 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 4432 2222222222 556666666777776666666542 33 23566666666666777777
Q ss_pred HHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006630 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519 (638)
Q Consensus 473 ~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 519 (638)
+..++++.... +.+..++..+..+|...|++++|...|+++++.
T Consensus 315 ~~~~~~a~~~~---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 315 IRVCSEVLQME---PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhC---cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 77666666554 245566666666666666777776666666654
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=2.9e-23 Score=222.59 Aligned_cols=432 Identities=9% Similarity=0.020 Sum_probs=328.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 006630 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGW 253 (638)
Q Consensus 174 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 253 (638)
...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..+|.+.|++++|+..|+++.+..|.+..+|..+...|
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 3556778888899999999999999998775 567889999999999999999999999999887788999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC--CCCCHHhHHHHHHHHHhcCCHHH
Q 006630 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG--CDPNANSYTVLIQALCRMEKMEE 331 (638)
Q Consensus 254 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~ 331 (638)
...|++++|...|+ .... .|+. ....+..+...+....|...++.+.... ..+........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 99999999999996 3322 2322 2233445556666788888888886541 01111112334445666677777
Q ss_pred HHHHHHHHHHcCCCCCHH-HHHHHHHHHH--------hcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHh
Q 006630 332 ANRAFVEMERSGCEADVV-TYTTLISGFC--------KSRKIDRCYEILDSMIQRGILPNQ-------LTYLHIMLAHEK 395 (638)
Q Consensus 332 A~~~~~~m~~~g~~~~~~-~~~~li~~~~--------~~g~~~~A~~~~~~m~~~~~~p~~-------~t~~~ll~~~~~ 395 (638)
+...+...... .+... .+..+...+. ..|++++|+.+++++.+.... +. .++..+...+..
T Consensus 179 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 179 EVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHh
Confidence 66655544322 22222 2333332222 235889999999999876433 22 346666778889
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006630 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475 (638)
Q Consensus 396 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 475 (638)
.|++++|...++.+.+. .|+...+..+...|...|++++|...|+++.+.. +.+...|..+...+...|++++|+..
T Consensus 256 ~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999886 4558888899999999999999999999998875 56788999999999999999999999
Q ss_pred HHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006630 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555 (638)
Q Consensus 476 ~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 555 (638)
|+++.... +.+..++..+...+...|++++|..+++++.+.. +.+...|..+..++...|++++|...|+++++..
T Consensus 333 ~~~a~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 333 FQKAQSLN---PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHC---TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 99999876 3456788889999999999999999999998873 3367789999999999999999999999987632
Q ss_pred -----CCCCHHHHHHHHHHHHhh----------cCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhHHHHHhhh
Q 006630 556 -----VMPQPDTFAKLMRGLKKL----------YNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLKEKAKKQV 616 (638)
Q Consensus 556 -----~~p~~~t~~~ll~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~~~~~~~ 616 (638)
.......+......+... |++++|...++++++.+|+++.++ .+|...|++++|.+.+++.
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 111222344556677777 999999999999999999988775 6899999999999999996
Q ss_pred hhhhh
Q 006630 617 DGRKR 621 (638)
Q Consensus 617 ~~~~~ 621 (638)
.+..+
T Consensus 489 l~~~~ 493 (537)
T 3fp2_A 489 AILAR 493 (537)
T ss_dssp HHHC-
T ss_pred HHhCC
Confidence 66544
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=3.8e-19 Score=179.54 Aligned_cols=331 Identities=10% Similarity=0.007 Sum_probs=199.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHH
Q 006630 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL 216 (638)
Q Consensus 137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li 216 (638)
++..+..+...+.+.|++++|+..|+++....|. +..++..+...+...|++++|+..|+++.+.. +.+...+..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD--NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHH
Confidence 3556777888888888888888888888887764 66778888888888888888888888877653 34667788888
Q ss_pred HHHHhCCCHHHHHHHHHHHhccCC---CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006630 217 DALCKNSSVKEAAKLFDEMRERFK---PSLRHFTSL------------LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281 (638)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 281 (638)
..|...|++++|...|+++.+..+ .+...+..+ ...+...|++++|.+.++++.+.. +.+...+
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 157 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR 157 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 888888888888888888876655 455555555 344455555555555555554432 2344444
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006630 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361 (638)
Q Consensus 282 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 361 (638)
..+...+...|++++|.+.++.+.+.. +.+..++..+...|...|++++|...|++..+.. +.+...+..+...
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~---- 231 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV---- 231 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH----
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHH----
Confidence 445555555555555555555544432 2234444444455555555555555555444431 1112211111000
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHH
Q 006630 362 RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV----SNYNVVIRLACKLGELKEA 437 (638)
Q Consensus 362 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A 437 (638)
. .......+...+...|++++|...++.+.+.. +.+. ..+..+...|.+.|++++|
T Consensus 232 -------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 232 -------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp -------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 0 00011122445666677777777776666543 2222 2234456677777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHH
Q 006630 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501 (638)
Q Consensus 438 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~ 501 (638)
...|++..+.. +.+...|..+...+...|++++|...|+++.+.. +.+...+..+..+..
T Consensus 292 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 292 IRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN---ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCChHHHHHHHHHHH
Confidence 77777777654 4466777777777777777777777777777765 233445555544443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=3.8e-19 Score=179.50 Aligned_cols=318 Identities=10% Similarity=0.000 Sum_probs=165.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006630 211 VFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290 (638)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 290 (638)
.+..+...+...|++++|...|+++....|.+..+|..+...+...|++++|...|+++.+.. +.+...+..+...+..
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444444444444432 2233444444444444
Q ss_pred cCCHhHHHHHHHHHHHcCCC--CCHHhHHH------------HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006630 291 MGKMTDAFELLKEMRRKGCD--PNANSYTV------------LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356 (638)
Q Consensus 291 ~g~~~~a~~~~~~~~~~g~~--~~~~~~~~------------li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 356 (638)
.|++++|.+.++.+.+.... .+...+.. +...+...|++++|...|+++.+.. +.+...+..+..
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 162 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAE 162 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 44444444444444433110 01112211 2334444444444444444444332 223344444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006630 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436 (638)
Q Consensus 357 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 436 (638)
.+...|++++|+..++++.+.. +.+...+..+...|...|++++
T Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~------------------------------------~~~~~~~~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKAASKLK------------------------------------SDNTEAFYKISTLYYQLGDHEL 206 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC------------------------------------SCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC------------------------------------CCCHHHHHHHHHHHHHcCCHHH
Confidence 4444444444444444444432 2333444444444444444444
Q ss_pred HHHHHHHHHHCCCCCCHHH------------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcH----HHHHHHHHHH
Q 006630 437 AVNVWNEMEAASLSPGTDS------------FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY----GTLKALLNSL 500 (638)
Q Consensus 437 A~~~~~~m~~~~~~p~~~~------------~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~----~~~~~ll~~~ 500 (638)
|...|++..+.. +.+... ...+...+...|++++|+..++++..... .+. ..+..+...+
T Consensus 207 A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~la~~~ 282 (359)
T 3ieg_A 207 SLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP---SVAEYTVRSKERICHCF 282 (359)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CchHHHHHHHHHHHHHH
Confidence 444444444332 222222 22335667778888888888888777652 222 2344566777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhh
Q 006630 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKL 573 (638)
Q Consensus 501 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~ 573 (638)
...|++++|...++++.+.. +.+...|..+..++...|++++|...|+++++. .|+ ...+..+..+....
T Consensus 283 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 283 SKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHH
Confidence 88888888888888887762 236777888888888888888888888888754 454 45566666555543
No 15
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=1.9e-18 Score=184.55 Aligned_cols=427 Identities=9% Similarity=0.014 Sum_probs=295.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHH
Q 006630 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGC 214 (638)
Q Consensus 135 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ 214 (638)
+.+..+|..++. +.+.|++++|..+|+++....|. +...|...+..+.+.|++++|..+|++++.. .|+...|..
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~--~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~ 84 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPS--SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKC 84 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHH
Confidence 457788888887 46778888888888888887665 6778888888888888888888888888766 367777776
Q ss_pred HHHHH-HhCCCHHHHHH----HHHHHhcc---CCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCC
Q 006630 215 LLDAL-CKNSSVKEAAK----LFDEMRER---FKPSLRHFTSLLYGWCK---------EGKLVEAKYVLVQMKDAGFEPD 277 (638)
Q Consensus 215 li~~~-~~~g~~~~A~~----~~~~~~~~---~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~ 277 (638)
++... ...|+.+.|.+ +|+..... .+++...|...+..... .|++++|..+|++.++....+.
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~ 164 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINI 164 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTH
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhH
Confidence 66533 34566666654 66655432 23466777777776654 6777888888888776211111
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH------HcC---CCCC-
Q 006630 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME------RSG---CEAD- 347 (638)
Q Consensus 278 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~g---~~~~- 347 (638)
...|..........|. ..+ ..++. .+.++++.|..++.++. +.. ++|+
T Consensus 165 ~~~~~~~~~~e~~~~~-~~~-------------------~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~ 222 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINI-HLA-------------------KKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQN 222 (530)
T ss_dssp HHHHHHHHHHHHHHCH-HHH-------------------HHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC-
T ss_pred HHHHHHHHHHHHhhch-hHH-------------------HHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence 1223222211111110 001 11111 12345566666665532 111 2333
Q ss_pred -------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-----
Q 006630 348 -------VVTYTTLISGFCKS----RKI----DRCYEILDSMIQRGILPNQLTYLHIMLAHEK-------KEELE----- 400 (638)
Q Consensus 348 -------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~-------~g~~~----- 400 (638)
...|...+...... ++. ++++.+|++.....+ -+...|...+..+.. .|+++
T Consensus 223 ~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~ 301 (530)
T 2ooe_A 223 TPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF 301 (530)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhh
Confidence 24566555433222 222 477888888887632 367777777777765 68876
Q ss_pred --HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 006630 401 --ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT-DSFVVMVHGFLGQGCLIEACEYFK 477 (638)
Q Consensus 401 --~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~ 477 (638)
+|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++.+.. +.+. ..|..++..+.+.|+.++|.++|+
T Consensus 302 ~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 302 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp HHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 899999999863235678899999999999999999999999999863 2233 589999999999999999999999
Q ss_pred HHHhCCCCCCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-
Q 006630 478 EMVGRGLLSAPQYGTLKALLNS-LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD- 555 (638)
Q Consensus 478 ~m~~~~~~~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~- 555 (638)
+..+.. +.+...+...... +...|++++|..+|+.+++.. +.+...|..++..+.+.|+.++|..+|++.+..+
T Consensus 381 ~Al~~~---~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 381 KAREDA---RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHTCT---TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHHhcc---CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 999864 2333344333222 336899999999999998863 2367899999999999999999999999998753
Q ss_pred CCCC--HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcc
Q 006630 556 VMPQ--PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQ 594 (638)
Q Consensus 556 ~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 594 (638)
..|+ ...|...+......|+.+.+..+.+++.+..|+++
T Consensus 457 ~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 457 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 497 (530)
T ss_dssp SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhc
Confidence 2332 44788888888889999999999999999999754
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=6e-17 Score=171.12 Aligned_cols=360 Identities=11% Similarity=0.018 Sum_probs=264.7
Q ss_pred CCHHHHHHHHHHHHh----CCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCH
Q 006630 207 PDEFVFGCLLDALCK----NSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCK----EGKLVEAKYVLVQMKDAGFEPDI 278 (638)
Q Consensus 207 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~ 278 (638)
.+...+..|...|.. .+++++|...|++..+. .+...+..|...|.. .+++++|.+.|++..+.| +.
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 355666666666666 67777777777766543 356667777777777 777777777777777654 55
Q ss_pred HHHHHHHHHHHH----cCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHH
Q 006630 279 VVYNNLLSGYAQ----MGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR----MEKMEEANRAFVEMERSGCEADVVT 350 (638)
Q Consensus 279 ~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~ 350 (638)
..+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 666667777766 667777777777777654 45566667777766 677888888888777654 6677
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006630 351 YTTLISGFCK----SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK----KEELEECVELMGEMRKIGCVPDVSNYN 422 (638)
Q Consensus 351 ~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 422 (638)
+..+...|.. .+++++|++.|++..+.| +...+..+...+.. .++.++|.++++...+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 7777777776 778888888888777754 45566666666665 678888888888877653 455666
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCCcHHHH
Q 006630 423 VVIRLACK----LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ-----GCLIEACEYFKEMVGRGLLSAPQYGTL 493 (638)
Q Consensus 423 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~p~~~~~ 493 (638)
.+..+|.. .++.++|...|++..+.+ +...+..+...|... +++++|+..|++..+.+. + ..+
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~---~--~a~ 331 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD---A--TAQ 331 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC---H--HHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC---H--HHH
Confidence 67777777 788888888888887654 455777777777776 889999999998888762 3 345
Q ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006630 494 KALLNSLLRAQ---KVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS----NGHVKEACSYCLDMMDADVMPQPDTFAKL 566 (638)
Q Consensus 494 ~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 566 (638)
..+...+...| ++++|.+.|++..+.+ +...+..+...|.. .+++++|+.+|++..+.+ ++..+..+
T Consensus 332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~L 405 (490)
T 2xm6_A 332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQL 405 (490)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 56666666655 7888999999888763 67788888888888 789999999999888764 46677788
Q ss_pred HHHHHh----hcCHHHHHHHHHHHHHHH---Hhccccc
Q 006630 567 MRGLKK----LYNRQIAAEITEKVRKMA---AERQITF 597 (638)
Q Consensus 567 l~~~~~----~g~~~~A~~~~~~~~~~~---p~~~~~~ 597 (638)
...|.. .+|+++|...++++.+.+ |+++.+.
T Consensus 406 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~ 443 (490)
T 2xm6_A 406 GEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRN 443 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHH
Confidence 888887 789999999999999998 5566554
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=2e-16 Score=167.13 Aligned_cols=391 Identities=12% Similarity=0.057 Sum_probs=270.0
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHhccCCCCHH
Q 006630 173 TTEVFVILMRRFAS----ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCK----NSSVKEAAKLFDEMRERFKPSLR 244 (638)
Q Consensus 173 ~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 244 (638)
++..+..+...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|...|++..+. .+..
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~ 112 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQ 112 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence 44445555555555 566666666666665542 45556666666666 66667777766665442 2556
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHcCCCCCHHhH
Q 006630 245 HFTSLLYGWCK----EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ----MGKMTDAFELLKEMRRKGCDPNANSY 316 (638)
Q Consensus 245 ~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~ 316 (638)
.+..|...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...+
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 66666666666 667777777777776654 45566666666665 567777777777776653 55666
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006630 317 TVLIQALCR----MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK----SRKIDRCYEILDSMIQRGILPNQLTYLH 388 (638)
Q Consensus 317 ~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 388 (638)
..|...|.. .++.++|.+.|++..+.| +...+..+...|.. .+++++|+.+|++..+.| +...+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 260 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFR 260 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 677777776 677777777777777653 55666666666665 677888888887777653 4455556
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006630 389 IMLAHEK----KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL-----GELKEAVNVWNEMEAASLSPGTDSFVVM 459 (638)
Q Consensus 389 ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~l 459 (638)
+...+.. .++.++|.+.|+...+.+ +...+..+..+|... +++++|...|++..+.+ +...+..+
T Consensus 261 lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l 334 (490)
T 2xm6_A 261 LGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANL 334 (490)
T ss_dssp HHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHH
Confidence 6666666 778888888888877654 455666777777776 88999999999888765 45677778
Q ss_pred HHHHHhcC---CHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006630 460 VHGFLGQG---CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR----AQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532 (638)
Q Consensus 460 i~~~~~~g---~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 532 (638)
...|...| +.++|+++|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+.
T Consensus 335 g~~y~~~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg 406 (490)
T 2xm6_A 335 GAIYFRLGSEEEHKKAVEWFRKAAAKG-----EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLG 406 (490)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCcccHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 88877766 7889999999988875 34466677777877 789999999999998864 577888888
Q ss_pred HHHHc----cCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 533 HSLFS----NGHVKEACSYCLDMMDADVM-P-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 533 ~~~~~----~g~~~~A~~~~~~m~~~~~~-p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
..|.. .+++++|..+|++..+.+.. | +......+...+. .+.+.|.+..++.++..|++...
T Consensus 407 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~--~~~~~a~~~a~~~~~~~~~~~~~ 474 (490)
T 2xm6_A 407 EIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA--KQLQQAELLSQQYIEKYAPEAWA 474 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH--HHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888 89999999999999876532 2 2333333333322 35667777777777776665443
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=4.5e-19 Score=176.82 Aligned_cols=275 Identities=7% Similarity=-0.058 Sum_probs=133.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006630 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393 (638)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 393 (638)
..+..+...+...|++++|.++|+++.+.. +.+...+..++..+...|++++|+.+++++.+.... +...+..+...+
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 100 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGCYY 100 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHH
Confidence 334444444444455555555555444432 122333333444444455555555555554443221 333444444444
Q ss_pred HhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006630 394 EKKE-ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472 (638)
Q Consensus 394 ~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 472 (638)
...| ++++|.+.++.+.+.. +.+...+..+...|...|++++|...|+++.+.. +.+...+..+...|...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHH
Confidence 4455 4555555555544432 2334445555555555555555555555554443 22334444455555555555555
Q ss_pred HHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHccCCHHHH
Q 006630 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG--------CELNVYAWTIWIHSLFSNGHVKEA 544 (638)
Q Consensus 473 ~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~li~~~~~~g~~~~A 544 (638)
+..|+++.... +.+..++..+...+...|++++|...++++.+.. .+.....|..+..+|...|++++|
T Consensus 179 ~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 179 ERFFSQALSIA---PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhC---CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 55555555543 2334455555555555555555555555554431 012234555555555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 545 CSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 545 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
+..++++++.. ..+...|..+...+...|++++|.+.++++++++|+++..
T Consensus 256 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 306 (330)
T 3hym_B 256 LDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS 306 (330)
T ss_dssp HHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHH
T ss_pred HHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHH
Confidence 55555555431 1233445555555555555555555555555555555444
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=4.2e-17 Score=174.18 Aligned_cols=418 Identities=10% Similarity=0.049 Sum_probs=284.6
Q ss_pred ChhHHHHHHHHhccCchhHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 006630 103 RPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMR 182 (638)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 182 (638)
+......++.. ...|+...+...+......++.+...|..++..+.+.|++++|..+|++.....| +...|...+.
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p---~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL---HIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC---CHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---ChHHHHHHHH
Confidence 44455555653 4567776666666554455678899999999999999999999999999998764 5667777665
Q ss_pred HH-HhcCCHHHHHH----HHHhchhC-CCCC-CHHHHHHHHHHHHh---------CCCHHHHHHHHHHHhccCCCC--HH
Q 006630 183 RF-ASARMVKKAIE----VLDEMPKY-GCEP-DEFVFGCLLDALCK---------NSSVKEAAKLFDEMRERFKPS--LR 244 (638)
Q Consensus 183 ~~-~~~~~~~~A~~----~~~~m~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~~--~~ 244 (638)
.. ...|+.+.|.+ +|+..... |..| +...|...+....+ .|+++.|..+|++... .|.+ ..
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~ 166 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQ 166 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHH
Confidence 33 34566666654 77776543 5444 56788888887665 6899999999999887 3322 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH------HcC---CCCC---
Q 006630 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR------RKG---CDPN--- 312 (638)
Q Consensus 245 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~------~~g---~~~~--- 312 (638)
.|..........|. .+...++. ...+++..|..++.++. +.. ++|+
T Consensus 167 ~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~ 224 (530)
T 2ooe_A 167 LWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTP 224 (530)
T ss_dssp HHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--C
T ss_pred HHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCCh
Confidence 34333221111111 01111111 01234555555555421 111 2333
Q ss_pred -----HHhHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCCHH-------
Q 006630 313 -----ANSYTVLIQALCRM----EKM----EEANRAFVEMERSGCEADVVTYTTLISGFCK-------SRKID------- 365 (638)
Q Consensus 313 -----~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~~------- 365 (638)
...|...+...... ++. +.+..+|++..... +.+...|..++..+.+ .|+++
T Consensus 225 ~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~ 303 (530)
T 2ooe_A 225 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 303 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhH
Confidence 23444444332221 222 46777888877652 4467888888887775 68876
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 006630 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD-V-SNYNVVIRLACKLGELKEAVNVWNE 443 (638)
Q Consensus 366 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~-~~~~~li~~~~~~g~~~~A~~~~~~ 443 (638)
+|..+|++..+.-.+-+...+..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|..+|++
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 88999998886322335778888888888999999999999999885 343 3 5788888888889999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Q 006630 444 MEAASLSPGTDSFVVMVHG-FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG-C 521 (638)
Q Consensus 444 m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~ 521 (638)
..+.. +.+...|...+.. +...|+.++|..+|++.++.. +.+...+..++..+.+.|+.++|+.+|++++..+ .
T Consensus 382 Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~---p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 382 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY---GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC---CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 98763 3333444333322 346899999999999998875 3457788888888889999999999999998863 2
Q ss_pred CC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006630 522 EL--NVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554 (638)
Q Consensus 522 ~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 554 (638)
.| ....|...+......|+.+.+..+++++.+.
T Consensus 458 ~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 458 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 23 2457888888888899999999999888753
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.7e-18 Score=172.60 Aligned_cols=284 Identities=13% Similarity=0.019 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006630 209 EFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288 (638)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 288 (638)
...+..+...+...|++++|..+|+++....|.+...+..++..+...|++++|..+++++.+.. +.+...|..+...+
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYY 100 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHH
Confidence 33444455555555555555555555554444445555555555555555555555555555432 22344444555555
Q ss_pred HHcC-CHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006630 289 AQMG-KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367 (638)
Q Consensus 289 ~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 367 (638)
...| ++++|.+.+++..+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHH
Confidence 5555 5555555555554432 1133444455555555555555555555544432 11233344444444445555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006630 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA 447 (638)
Q Consensus 368 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 447 (638)
...+++..+.. +.+...+..+...|...|++++|...|+++.+.
T Consensus 179 ~~~~~~al~~~------------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 179 ERFFSQALSIA------------------------------------PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp HHHHHHHHTTC------------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC------------------------------------CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 55554444432 223333344444444444444444444433321
Q ss_pred C--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006630 448 S--------LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519 (638)
Q Consensus 448 ~--------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 519 (638)
. .+.+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|.+.|+++.+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 223 IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI---PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred hhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC---ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 0 01223445555555555555555555555555443 223344444555555555555555555555443
Q ss_pred CCCCCHHHHHHHHHHH
Q 006630 520 GCELNVYAWTIWIHSL 535 (638)
Q Consensus 520 ~~~p~~~~~~~li~~~ 535 (638)
. +.+...+..+..++
T Consensus 300 ~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 300 R-RDDTFSVTMLGHCI 314 (330)
T ss_dssp C-SCCHHHHHHHHHHH
T ss_pred C-CCchHHHHHHHHHH
Confidence 1 11344444444444
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=1.6e-18 Score=175.81 Aligned_cols=307 Identities=12% Similarity=-0.023 Sum_probs=174.3
Q ss_pred hcCCHHHHHH-HHHhchhCCC-CC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHH
Q 006630 186 SARMVKKAIE-VLDEMPKYGC-EP--DEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVE 261 (638)
Q Consensus 186 ~~~~~~~A~~-~~~~m~~~g~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 261 (638)
..|++++|+. .|++...... .| +...+..+...+.+.|++++|...|+++.+..|.+..+|..+...|...|++++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 3467788887 7776654321 11 245567777888888888888888888877777788888888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341 (638)
Q Consensus 262 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (638)
|...|+++.+.. +.+..++..+...+...|++++|.+.++.+.+.... +...+..+... .. ..
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~~- 179 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------GA- 179 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC------------------------
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------hh-
Confidence 888888887764 446777888888888888888888888888775322 22222111000 00 00
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006630 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP-NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420 (638)
Q Consensus 342 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 420 (638)
.+ ...+..+. .+...|++++|+..|+++.+..... +..++..+...+...|++++|...++.+.+.. +.+...
T Consensus 180 ---~~-~~~~~~~~-~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~ 253 (368)
T 1fch_A 180 ---GL-GPSKRILG-SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLL 253 (368)
T ss_dssp ----------CTTH-HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred ---cc-cHHHHHHH-HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHH
Confidence 00 00011111 1224455555555555554432211 34455555555555555555555555554432 334555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--------CCcHHH
Q 006630 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS--------APQYGT 492 (638)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--------~p~~~~ 492 (638)
+..+...|.+.|++++|...|+++.+.. +.+...+..+...|...|++++|...|+++....... +....+
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 332 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI 332 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHH
Confidence 5666666666666666666666665543 3445566666666666666666666666665532100 011456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 006630 493 LKALLNSLLRAQKVEMAKDVWSCI 516 (638)
Q Consensus 493 ~~~ll~~~~~~g~~~~A~~~~~~~ 516 (638)
|..+..++...|++++|..++.+.
T Consensus 333 ~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 333 WSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHhCChHhHHHhHHHH
Confidence 666777777777777777666543
No 22
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=3.8e-18 Score=166.45 Aligned_cols=275 Identities=11% Similarity=0.063 Sum_probs=217.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006630 321 QALCRMEKMEEANRAFVEMERSGCEADV--VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398 (638)
Q Consensus 321 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 398 (638)
+-....|+++.|+..++..... .|+. .....+..+|...|++++|+..++. .-.|+..++..+...+...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 3455668888888888776533 2332 3445567888888888888876644 234566777788888888888
Q ss_pred HHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006630 399 LEECVELMGEMRKIGC-VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477 (638)
Q Consensus 399 ~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 477 (638)
.++|.+.++.+...+. +.+...+..+...|...|++++|++.+++ +.+...+..++..|.+.|++++|.+.|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8899988888887654 44566667777889999999999999887 4677889999999999999999999999
Q ss_pred HHHhCCCCCCCcHH-H--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006630 478 EMVGRGLLSAPQYG-T--LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554 (638)
Q Consensus 478 ~m~~~~~~~~p~~~-~--~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 554 (638)
++.+.. |+.. + ....+..+...|++++|..+|+++.+. .+.+...|+.+..++.+.|++++|...|+++++.
T Consensus 155 ~~~~~~----p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 155 KMQDQD----EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHC----TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhC----cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 998875 3321 1 112334444568999999999999987 3457889999999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHhhcCHHH-HHHHHHHHHHHHHhcccccchhhhhhhhhhHHHHH
Q 006630 555 DVMPQPDTFAKLMRGLKKLYNRQI-AAEITEKVRKMAAERQITFKMYKRRGERDLKEKAK 613 (638)
Q Consensus 555 ~~~p~~~t~~~ll~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~y~~~g~~~~A~~~~ 613 (638)
. +-+..++..++..+...|+.++ +.++++++++++|+++.+.+++.+.+.++++..-|
T Consensus 230 ~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 230 D-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHc
Confidence 2 3367789999999999999865 67999999999999999999999999999988765
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=5.6e-18 Score=171.84 Aligned_cols=304 Identities=11% Similarity=-0.016 Sum_probs=172.5
Q ss_pred HhcCChhHHHH-HHHHHHhcCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCH
Q 006630 149 SKMRKFGAVWA-LMEEMRKEKPQLI--TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV 225 (638)
Q Consensus 149 ~~~~~~~~A~~-~~~~m~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 225 (638)
...|++++|.. .|++.....|..+ +...+..+...+...|++++|+..|+++.+.. +.+..++..+...|.+.|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34578888888 7776655544332 24457778888999999999999999998875 56778899999999999999
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 006630 226 KEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305 (638)
Q Consensus 226 ~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 305 (638)
++|...|+++.+..|.+..+|..+...|...|++++|.+.|+++.+.. +.+...+..+... ..
T Consensus 115 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~~--------- 177 (368)
T 1fch_A 115 LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------AG--------- 177 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC-----------------------
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------hh---------
Confidence 999999999888778889999999999999999999999999999864 2222222211000 00
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006630 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA-DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384 (638)
Q Consensus 306 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 384 (638)
. ..+. ..+..+...+ ..|++++|...|+++.+..... +..++..+...|...|++++|+..|+++.+... .+..
T Consensus 178 -~-~~~~-~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~ 252 (368)
T 1fch_A 178 -G-AGLG-PSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYL 252 (368)
T ss_dssp -----------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH
T ss_pred -h-hccc-HHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHH
Confidence 0 0000 0011111112 4445555555555544432110 244444455555555555555555555444321 1344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----------H
Q 006630 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG-----------T 453 (638)
Q Consensus 385 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----------~ 453 (638)
++..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...|+++.+.. +.+ .
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhh
Confidence 44555555555555555555555554432 3344455555555555555555555555554321 111 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 006630 454 DSFVVMVHGFLGQGCLIEACEYFK 477 (638)
Q Consensus 454 ~~~~~li~~~~~~g~~~~A~~~~~ 477 (638)
.+|..+..+|...|++++|..++.
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHHHHHhCChHhHHHhHH
Confidence 555566666666666666555544
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=9.9e-17 Score=168.68 Aligned_cols=390 Identities=12% Similarity=-0.024 Sum_probs=210.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhchhC--------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcc-----
Q 006630 172 ITTEVFVILMRRFASARMVKKAIEVLDEMPKY--------GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER----- 238 (638)
Q Consensus 172 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----- 238 (638)
.....|+.+...+...|++++|++.|++..+. .-+....+|+.+..+|...|++++|...|++..+-
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34566777777778888888888888776431 11223567777888888888888888877765321
Q ss_pred ---CCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HHcCCHhHHHHHHHHHHHcCCC
Q 006630 239 ---FKPSLRHFTSLLYGWCKE--GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY---AQMGKMTDAFELLKEMRRKGCD 310 (638)
Q Consensus 239 ---~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~---~~~g~~~~a~~~~~~~~~~g~~ 310 (638)
.+....++..+..++... +++++|++.|++..+.. +-+...+..+..++ ...++.++|++.+++..+...
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p- 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP- 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-
Confidence 122345555555555543 45777888887777653 22344444444443 344666777777777666532
Q ss_pred CCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006630 311 PNANSYTVLIQALCR----MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386 (638)
Q Consensus 311 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 386 (638)
.+..++..+...+.. .|++++|.+++++..... +.+..++..+...|...|++++|+..+++..+..+. +..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 244455555444433 355667777777766653 345666777777777777777777777777765332 44455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006630 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466 (638)
Q Consensus 387 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 466 (638)
..+...+...+... .... . ..........+..++|...|++..+.+ +.+...+..+...|...
T Consensus 285 ~~lg~~y~~~~~~~---------~~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQV---------MNLR-E------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh---------hhHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 55544442211100 0000 0 000011112234567777777776654 44455677777888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCcH--HHHHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 006630 467 GCLIEACEYFKEMVGRGLLSAPQY--GTLKALLN-SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543 (638)
Q Consensus 467 g~~~~A~~~~~~m~~~~~~~~p~~--~~~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 543 (638)
|++++|+..|++.+.... .+.. ..+..+.. .....|++++|+..|++.++. .|+...+... ...
T Consensus 348 ~~~~~A~~~~~kaL~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~---------~~~ 414 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKEL--TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM---------KDK 414 (472)
T ss_dssp TCHHHHHHHHHHHHHSCC--CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH---------HHH
T ss_pred ccHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH---------HHH
Confidence 888888888888777652 1211 11222222 233567778888888777764 4443332222 223
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 544 ACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 544 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
+..++++.+... +.+..+|..+..++...|++++|++.++++++++|.+|.+
T Consensus 415 l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a 466 (472)
T 4g1t_A 415 LQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466 (472)
T ss_dssp HHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------------
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcH
Confidence 334444444432 3345667777777777788888888888888877777654
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=1.8e-16 Score=166.79 Aligned_cols=212 Identities=8% Similarity=-0.048 Sum_probs=122.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh------------
Q 006630 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG------------ 465 (638)
Q Consensus 398 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~------------ 465 (638)
+.++|.+++++..+.. +.+..++..+...|.+.|++++|...|++..+.. +.+..++..+...|..
T Consensus 228 ~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~ 305 (472)
T 4g1t_A 228 EEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENG 305 (472)
T ss_dssp --CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444555555444432 3344444455555555555555555555554432 2333344444333321
Q ss_pred -------cCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HH
Q 006630 466 -------QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY--AWTIWIH-SL 535 (638)
Q Consensus 466 -------~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~li~-~~ 535 (638)
.+..++|+..|++..... +.+..++..+...+...|++++|+..|+++++....+... .+..+.. .+
T Consensus 306 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~ 382 (472)
T 4g1t_A 306 MYGKRKLLELIGHAVAHLKKADEAN---DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQL 382 (472)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHC---TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhcC---CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 234678889999888876 3445567788899999999999999999998864332221 2233332 34
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhHHH
Q 006630 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLKEK 611 (638)
Q Consensus 536 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~~ 611 (638)
...|++++|+..|++.++. .|+..... +..+.+..++++.++.+|+++.++ .+|...|++++|.+
T Consensus 383 ~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~ 451 (472)
T 4g1t_A 383 YQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADE 451 (472)
T ss_dssp HTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----
T ss_pred HHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5789999999999999865 56543322 334566778889999999999886 58999999999999
Q ss_pred HHhhhhhhhhhhhh
Q 006630 612 AKKQVDGRKRRARQ 625 (638)
Q Consensus 612 ~~~~~~~~~~~~~~ 625 (638)
.|++..+.....+.
T Consensus 452 ~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 452 DSERGLESGSLIPS 465 (472)
T ss_dssp --------------
T ss_pred HHHHHHhcCCCCCc
Confidence 99997776665543
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=3e-18 Score=173.76 Aligned_cols=247 Identities=9% Similarity=-0.047 Sum_probs=124.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006630 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392 (638)
Q Consensus 313 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 392 (638)
...+..+...+.+.|++++|..+|+++.+.. +.+..+|..+...|...|++++|+..|+++.+... .+..++..+...
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 3345666666666666666666666666553 33556666666666666666666666666665432 245555555556
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006630 393 HEKKEELEECVELMGEMRKIGCVPDV-SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471 (638)
Q Consensus 393 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 471 (638)
+...|++++|...++++.+.. |+. ..+..+. .....+..+...+...|++++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~ 195 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLEG 195 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHHH
Confidence 666666666666665555421 110 0000000 001123334444555555555
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006630 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551 (638)
Q Consensus 472 A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 551 (638)
|+.+|+++...... .++..++..+...+...|++++|...|+++++.. +.+...|..++.+|...|++++|+..|+++
T Consensus 196 A~~~~~~al~~~p~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 196 VKELYLEAAHQNGD-MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHHHHHHSCS-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555554310 0134455555555555555555555555555442 224455555555555555555555555555
Q ss_pred HhCCCCC-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 552 MDADVMP-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 552 ~~~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
++. .| +..+|..+..+|...|++++|...+++++++.|+
T Consensus 274 l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 274 LEI--QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRK 313 (365)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred Hhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 543 23 2445555555555566666666666666666555
No 27
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=3.6e-15 Score=164.98 Aligned_cols=380 Identities=13% Similarity=0.131 Sum_probs=278.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHH
Q 006630 171 LITTEVFVILMRRFASARMVKKAIEVLDEMPKYG--CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTS 248 (638)
Q Consensus 171 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 248 (638)
..++.-....+++|...|.+.+|+++++++.-.+ +.-+....+.|+.+..+. +..+..++.++...- + ...
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~---d---~~e 1054 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY---D---APD 1054 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc---c---HHH
Confidence 3456666778888889999999999999887432 113445666677766666 445555555555422 1 344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 006630 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328 (638)
Q Consensus 249 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 328 (638)
+...+...|.+++|..+|++.. -.....+.++. ..+++++|.++.++. -+..+|..+..++.+.|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCC
Confidence 7778888999999999998852 12222233332 678899998888765 256788899999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006630 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408 (638)
Q Consensus 329 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 408 (638)
+++|...|.+. .|...|..++..+.+.|++++|+++|....+.. ++....+.++.+|++.+++++...+.
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 99999999664 377888889999999999999999998877654 23333335888888888888544332
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 006630 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488 (638)
Q Consensus 409 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p 488 (638)
+ .++...+..+...|...|++++|..+|.... .|..+...|.+.|++++|++.+++. .
T Consensus 1191 --~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~---------ny~rLA~tLvkLge~q~AIEaarKA--------~ 1248 (1630)
T 1xi4_A 1191 --N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA--------N 1248 (1630)
T ss_pred --h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh---------HHHHHHHHHHHhCCHHHHHHHHHHh--------C
Confidence 2 4566677778888999999999999998852 8899999999999999999998876 3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 006630 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLM 567 (638)
Q Consensus 489 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll 567 (638)
+..+|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++..+. +.|. ...|.-+.
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELa 1321 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELA 1321 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHH
Confidence 3468888888899999998888876543 23666777889999999999999999988774 3443 33465555
Q ss_pred HHHHh--hcCHHHHHHHHHHHHHHHH-----hccccc----chhhhhhhhhhHH
Q 006630 568 RGLKK--LYNRQIAAEITEKVRKMAA-----ERQITF----KMYKRRGERDLKE 610 (638)
Q Consensus 568 ~~~~~--~g~~~~A~~~~~~~~~~~p-----~~~~~~----~~y~~~g~~~~A~ 610 (638)
..+.+ .++..++.+.+..-....| +++.++ -+|.+.|+|+.|.
T Consensus 1322 iLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1322 ILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 55554 4677777777777776665 444443 5788899999888
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=2.1e-17 Score=164.39 Aligned_cols=285 Identities=9% Similarity=-0.033 Sum_probs=157.7
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006630 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360 (638)
Q Consensus 281 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 360 (638)
+..+...+...|++++|..+++++.+... .+...+..+...+...|++++|...|+++.+.. +.+..++..+...|..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 33444445555555555555555544321 234444444555555555555555555544432 2234444444444555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHHHcCCHHHHH
Q 006630 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV-IR-LACKLGELKEAV 438 (638)
Q Consensus 361 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~~A~ 438 (638)
.|++++|++.++++.+.... +...+..+... .|+......+ .. .+...|++++|.
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A~ 158 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRECR 158 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHHH
Confidence 55555555555544443211 11011000000 0000011111 11 255667777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006630 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518 (638)
Q Consensus 439 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 518 (638)
..++++.+.. +.+...+..+...+...|++++|+.+++++.... +.+..++..+...+...|++++|...++++.+
T Consensus 159 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 159 TLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR---PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777776654 4466677777777777777777777777777665 34566677777777777777777777777766
Q ss_pred cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 006630 519 KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP-----------QPDTFAKLMRGLKKLYNRQIAAEITEKVR 587 (638)
Q Consensus 519 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----------~~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 587 (638)
.. +.+...|..+..+|...|++++|...++++++....+ +...|..+..++...|+++.|..++++++
T Consensus 235 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 235 IN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 52 2246667777777777777777777777776532110 25567777777777777777777777777
Q ss_pred HHHHhccc
Q 006630 588 KMAAERQI 595 (638)
Q Consensus 588 ~~~p~~~~ 595 (638)
+..|++..
T Consensus 314 ~~~~~~~~ 321 (327)
T 3cv0_A 314 EPFAKEFG 321 (327)
T ss_dssp HHHHHHTT
T ss_pred Hhcchhhh
Confidence 77666543
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=1.2e-18 Score=173.45 Aligned_cols=239 Identities=13% Similarity=0.122 Sum_probs=74.3
Q ss_pred hcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006630 186 SARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYV 265 (638)
Q Consensus 186 ~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 265 (638)
+.|++++|.++++++. .| .+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|...
T Consensus 15 ~~~~ld~A~~fae~~~----~~--~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN----EP--AVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC----Ch--HHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3455666666666652 12 36666666666666666666666432 3555666666666666666666665
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006630 266 LVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345 (638)
Q Consensus 266 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 345 (638)
++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+.+.|...|.+++|..+|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 5554442 3445556666666666666666665553 245556666666666666666666666654
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006630 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425 (638)
Q Consensus 346 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 425 (638)
..|..++.++.+.|++++|++.++.+ .++.+|..++.+|...|+++.|...... +..++.....++
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv 214 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELI 214 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHH
Confidence 14666666666666666666666655 1556666666666666666666443322 122333344556
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006630 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465 (638)
Q Consensus 426 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 465 (638)
..|.+.|++++|..+++...... +-....|+-|...|++
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 66666666666666666665544 4445566666555555
No 30
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.79 E-value=1.3e-14 Score=160.71 Aligned_cols=339 Identities=11% Similarity=0.128 Sum_probs=231.9
Q ss_pred HHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH
Q 006630 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLV 260 (638)
Q Consensus 181 i~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 260 (638)
...+...|.+++|..+|++.. ......+.++. ..|++++|.++.+++. +..+|..+..++...|+++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn-----~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN-----EPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCHH
Confidence 445556677777777777642 12222333332 5567777777777553 5677888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340 (638)
Q Consensus 261 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 340 (638)
+|.+.|.+. -|...|..++.+|.+.|++++|.+.+....+.. ++....+.++.+|++.+++++...+.
T Consensus 1123 EAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---- 1190 (1630)
T 1xi4_A 1123 EAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---- 1190 (1630)
T ss_pred HHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----
Confidence 888888653 466777788888888888888888888777653 33333445888888888877533332
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006630 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420 (638)
Q Consensus 341 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 420 (638)
+ .++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++. .+..+
T Consensus 1191 ~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~a 1252 (1630)
T 1xi4_A 1191 N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRT 1252 (1630)
T ss_pred h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHH
Confidence 1 456667777888888888888888888874 36778888888888888888888765 34577
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q 006630 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500 (638)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~ 500 (638)
|..+..+|...|++..|......+ ..+...+..++..|...|.+++|+.+++..+... +-....|..+...+
T Consensus 1253 Wkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le---raH~gmftELaiLy 1324 (1630)
T 1xi4_A 1253 WKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE---RAHMGMFTELAILY 1324 (1630)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC---hhHhHHHHHHHHHH
Confidence 777777888888888887766542 3455677788889999999999999998887654 24444555555555
Q ss_pred H--HcCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHccCCHHHHHHH-------------HHHHHhCCCCCC
Q 006630 501 L--RAQKVEMAKDVWSCIVTKGCEL------NVYAWTIWIHSLFSNGHVKEACSY-------------CLDMMDADVMPQ 559 (638)
Q Consensus 501 ~--~~g~~~~A~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~-------------~~~m~~~~~~p~ 559 (638)
+ +-+++.++.++|..-.. ++| +...|.-++..|.+.|+++.|+.. |.+.+. ...|
T Consensus 1325 aKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n 1400 (1630)
T 1xi4_A 1325 SKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVAN 1400 (1630)
T ss_pred HhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--cccc
Confidence 5 44566666666664433 222 466789999999999999988833 111111 1345
Q ss_pred HHHHHHHHHHHHhhc
Q 006630 560 PDTFAKLMRGLKKLY 574 (638)
Q Consensus 560 ~~t~~~ll~~~~~~g 574 (638)
...|...+.-|...+
T Consensus 1401 ~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1401 VELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHHHHHhhC
Confidence 666666666665433
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=8.4e-18 Score=170.48 Aligned_cols=275 Identities=12% Similarity=-0.033 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 006630 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322 (638)
Q Consensus 243 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 322 (638)
...|..+...+.+.|++++|...|+++.+.. +.+..+|..+...|...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3345555566666666666666666655543 3345555555555666666666666665555542 2245555555666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006630 323 LCRMEKMEEANRAFVEMERSGCEADV-VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401 (638)
Q Consensus 323 ~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 401 (638)
|...|++++|...|+++.+.. |+. ..+..+. .....+..+...+...|++++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~ 195 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLEG 195 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHHH
Confidence 666666666666666555431 111 0010000 011122233333444444444
Q ss_pred HHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 402 CVELMGEMRKIGCV-PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480 (638)
Q Consensus 402 a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 480 (638)
|.++++++.+.... .+..++..+...|.+.|++++|+..|+++.+.. +.+..+|..+...|...|++++|+..|++++
T Consensus 196 A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 274 (365)
T 4eqf_A 196 VKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRAL 274 (365)
T ss_dssp HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444433211 134445555555555555555555555555443 3344555555555555555555555555555
Q ss_pred hCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------CCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006630 481 GRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC-----------ELNVYAWTIWIHSLFSNGHVKEACSYCL 549 (638)
Q Consensus 481 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~~~~~~~li~~~~~~g~~~~A~~~~~ 549 (638)
+.. +.+..++..+..+|.+.|++++|...|+++++... ..+...|..+..++...|+.+.+.....
T Consensus 275 ~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 275 EIQ---PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHC---TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred hcC---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 543 23345555555555555666666666555554310 0024556666666666677666665544
Q ss_pred H
Q 006630 550 D 550 (638)
Q Consensus 550 ~ 550 (638)
+
T Consensus 352 ~ 352 (365)
T 4eqf_A 352 G 352 (365)
T ss_dssp T
T ss_pred h
Confidence 3
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.79 E-value=5e-17 Score=161.70 Aligned_cols=279 Identities=10% Similarity=-0.001 Sum_probs=192.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006630 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393 (638)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 393 (638)
..+..+...+...|++++|..+|+++.+.. +.+...|..+...+...|++++|...++++.+... .+..++..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHH
Confidence 344555666666667777777766666543 23555666666666666666666666666665422 2444555555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHHhcCCHHH
Q 006630 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVM-VH-GFLGQGCLIE 471 (638)
Q Consensus 394 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-i~-~~~~~g~~~~ 471 (638)
...|++++|.+.++.+.+.. +.+...+..+... .|+......+ .. .+...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHH
Confidence 55555555555555555432 1111111111000 0111111122 22 3677899999
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006630 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551 (638)
Q Consensus 472 A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 551 (638)
|+.+++++.... +.+..++..+...+...|++++|...++++.+.. +.+...|..+..++...|++++|+..++++
T Consensus 157 A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 157 CRTLLHAALEMN---PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC---CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999876 4577889999999999999999999999998873 336788999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh------------ccccc----chhhhhhhhhhHHHHHhh
Q 006630 552 MDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE------------RQITF----KMYKRRGERDLKEKAKKQ 615 (638)
Q Consensus 552 ~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~------------~~~~~----~~y~~~g~~~~A~~~~~~ 615 (638)
++.. ..+...+..+...+...|++++|.+.++++++..|+ ++..+ .+|...|++++|.+++++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 8753 335778999999999999999999999999999999 55553 688999999999999998
Q ss_pred hhhhhhh
Q 006630 616 VDGRKRR 622 (638)
Q Consensus 616 ~~~~~~~ 622 (638)
..+..++
T Consensus 312 ~l~~~~~ 318 (327)
T 3cv0_A 312 NVEPFAK 318 (327)
T ss_dssp CSHHHHH
T ss_pred HHHhcch
Confidence 6555443
No 33
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=3e-17 Score=163.54 Aligned_cols=281 Identities=12% Similarity=0.123 Sum_probs=89.5
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 006630 150 KMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAA 229 (638)
Q Consensus 150 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 229 (638)
+.|++++|.++++++. ++.+|..++.++.+.|++++|++.|.+ .+|..+|..++..+...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHH
Confidence 4455666666665551 123555566666666666666666643 234445555666666666666666
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC
Q 006630 230 KLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309 (638)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 309 (638)
..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 82 ~yl~~ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 82 KYLQMARKK-ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHHh-CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 655444432 3334555566666666666666555553 245556666666666666666666666544
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006630 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHI 389 (638)
Q Consensus 310 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 389 (638)
..|..++.++.+.|++++|.+.+.++. ++.+|..++.+|...|+++.|...... +...+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA~------~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHcC------CchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHH
Confidence 245666666666666666666666551 556666666666666666666333222 11222233345
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHH
Q 006630 390 MLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL--GELKEAVNVWNEMEAASLSP------GTDSFVVMVH 461 (638)
Q Consensus 390 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~li~ 461 (638)
+..|.+.|.++++..+++...... +.....|+-|.-+|++- +++.+.++.|.. ..+++| +...|..+..
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHH
Confidence 556666666666666666655443 44455555555555543 233333333321 111122 2335666666
Q ss_pred HHHhcCCHHHHHH
Q 006630 462 GFLGQGCLIEACE 474 (638)
Q Consensus 462 ~~~~~g~~~~A~~ 474 (638)
.|.+.++++.|..
T Consensus 291 ly~~~~e~d~A~~ 303 (449)
T 1b89_A 291 LYDKYEEYDNAII 303 (449)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHhhchHHHHHH
Confidence 6666666666654
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=1.6e-15 Score=147.82 Aligned_cols=195 Identities=13% Similarity=0.067 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006630 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP-NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357 (638)
Q Consensus 279 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 357 (638)
.++..+...+...++.++|.+.++++...+..| +...+..+...|...|++++|++.|++ +.+...+..++..
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~ 139 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQI 139 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHH
Confidence 333334444444444444444444443333222 222333333444444444444444443 1233444444444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006630 358 FCKSRKIDRCYEILDSMIQRGILPNQLTY---LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434 (638)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 434 (638)
|.+.|++++|.+.|+++.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..+|.+.|++
T Consensus 140 ~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 140 LLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRW 216 (291)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCH
Confidence 444444444444444444432 221100 011111222344555555555554442 34455555555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCC
Q 006630 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE-ACEYFKEMVGRG 483 (638)
Q Consensus 435 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~ 483 (638)
++|+..|+++.+.+ +.+..++..++..+...|+..+ +.++++++.+..
T Consensus 217 ~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 217 EAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 55555555555443 3444555555555555555543 345555555543
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=179.24 Aligned_cols=152 Identities=20% Similarity=0.275 Sum_probs=120.7
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhc----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006630 206 EPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE----RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281 (638)
Q Consensus 206 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 281 (638)
..-..+||+||++||+.|++++|.++|++|.+ +..||++|||+||.+||+.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 34457899999999999999999999988753 47899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCC-HhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HHHHHHH
Q 006630 282 NNLLSGYAQMGK-MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD------VVTYTTL 354 (638)
Q Consensus 282 ~~ll~~~~~~g~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~~l 354 (638)
|++|.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+.+.+- ++..+++ ..+..|+ ..+...|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~v----L~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV----LKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHH----HHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHH----HHHHHHh-CcccCCCCCCcccccchHHH
Confidence 999999999987 47889999999999999999999999876665433 3333333 2233333 3444556
Q ss_pred HHHHHhcC
Q 006630 355 ISGFCKSR 362 (638)
Q Consensus 355 i~~~~~~g 362 (638)
.+.|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 66665554
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=179.38 Aligned_cols=123 Identities=17% Similarity=0.254 Sum_probs=102.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHh
Q 006630 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD---AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315 (638)
Q Consensus 239 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 315 (638)
......+||+||++||+.|++++|.++|.+|.+ .|+.||.+|||+||.+||+.|++++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 344567889999999999999999988877764 47888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006630 316 YTVLIQALCRMEK-MEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361 (638)
Q Consensus 316 ~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 361 (638)
||+||+++|+.|+ .++|.++|++|.+.|+.||.++|+.++.++.+.
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 8888888888887 477888888888888888888888888765543
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=4.4e-15 Score=141.97 Aligned_cols=227 Identities=11% Similarity=0.066 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 006630 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC--VPD----VSNYN 422 (638)
Q Consensus 349 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~ 422 (638)
..|..+...+...|++++|+..|+++.+.. .+..++..+...+...|++++|.+.+..+.+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 344555555556666666666666655554 4555555556666666666666666665544310 111 46667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHH
Q 006630 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502 (638)
Q Consensus 423 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~ 502 (638)
.+...|.+.|++++|...|+++.+.. |+. ..+...|++++|+..++++.... +.+...+..+...+..
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN---PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC---cchHHHHHHHHHHHHH
Confidence 77777788888888888888777643 443 34555677888888888888765 3456677778888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHH
Q 006630 503 AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582 (638)
Q Consensus 503 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~ 582 (638)
.|++++|...|+++++.. +.+...|..+..+|...|++++|+..++++++.. ..+...|..+...+...|++++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 899999999999888763 3367788888999999999999999999888753 33477788889999999999999999
Q ss_pred HHHHHHHHH
Q 006630 583 TEKVRKMAA 591 (638)
Q Consensus 583 ~~~~~~~~p 591 (638)
++++++++|
T Consensus 230 ~~~a~~~~~ 238 (258)
T 3uq3_A 230 LDAARTKDA 238 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhCh
Confidence 999999993
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.70 E-value=9.9e-16 Score=142.57 Aligned_cols=196 Identities=13% Similarity=0.002 Sum_probs=153.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHH
Q 006630 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494 (638)
Q Consensus 415 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~ 494 (638)
+++...+..+...+.+.|++++|...|++..+.+ +.+...|..+...+.+.|++++|+..|++.++.. +.+...+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~ 77 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART---PRYLGGYM 77 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHH
Confidence 4566777888888888999999999999888776 6677888888888889999999999999888876 35667788
Q ss_pred HHHHHHHHc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 006630 495 ALLNSLLRA-----------QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTF 563 (638)
Q Consensus 495 ~ll~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 563 (638)
.+...+... |++++|+..|+++++.... +...|..+..+|...|++++|+..|+++++.. .+...+
T Consensus 78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~ 154 (217)
T 2pl2_A 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIR 154 (217)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHH
Confidence 888888888 9999999999999887322 57788889999999999999999999998866 778889
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhHHHHHhhhh
Q 006630 564 AKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLKEKAKKQVD 617 (638)
Q Consensus 564 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~~~~~~~~ 617 (638)
..+..++...|++++|+..++++++.+|+++.++ .+|...|++++|.+.+++..
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999998875 57889999999999988754
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.4e-14 Score=135.72 Aligned_cols=223 Identities=10% Similarity=0.043 Sum_probs=132.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 006630 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI--LPN----QLTYLH 388 (638)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~t~~~ 388 (638)
.+..+...+...|++++|...|++..+.. .+...|..+...|...|++++|+..+++..+... .++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444444445555555555555544443 3444444455555555555555555554443211 111 344455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006630 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468 (638)
Q Consensus 389 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 468 (638)
+...+...|++++|...++.+.+. .|+. ..+.+.|++++|...++++.... +.+...|..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 555555555555555555555543 2221 23555566777777777776653 3345566777777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006630 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548 (638)
Q Consensus 469 ~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 548 (638)
+++|+..|+++.... +.+..++..+...+...|++++|...++++++.. +.+...|..+..++...|++++|...+
T Consensus 155 ~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA---PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp HHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 777777777777665 3456667777777777777777777777777653 224667777777777788888888777
Q ss_pred HHHHh
Q 006630 549 LDMMD 553 (638)
Q Consensus 549 ~~m~~ 553 (638)
+++++
T Consensus 231 ~~a~~ 235 (258)
T 3uq3_A 231 DAART 235 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77764
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.66 E-value=1.6e-14 Score=150.22 Aligned_cols=376 Identities=12% Similarity=0.060 Sum_probs=201.0
Q ss_pred HHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCH---HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC--
Q 006630 183 RFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV---KEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG-- 257 (638)
Q Consensus 183 ~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g-- 257 (638)
.+.+.|++++|+++|++..+.| +...+..|..+|...|+. ++|...|++..+. +...+..|...+...|
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-------------------------------CHHHHHHHHHTC--C
T ss_pred HHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCC
Confidence 3344455555555555544433 122233344444444444 5555555555433 3444444444333333
Q ss_pred ---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhH---HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC---
Q 006630 258 ---KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD---AFELLKEMRRKGCDPNANSYTVLIQALCRMEK--- 328 (638)
Q Consensus 258 ---~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~--- 328 (638)
++++|...|++..+.|. ++ .+..|...|...+..+. +.+.+......| +......|...|...+.
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 45566666666665542 22 44445555554443222 333333333333 23344555566666553
Q ss_pred -HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHH
Q 006630 329 -MEEANRAFVEMERSGCEADVVTYTTLISGFCKSR---KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK----EELE 400 (638)
Q Consensus 329 -~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~----g~~~ 400 (638)
.+.+..++..... .++..+..|...|...| +.++|++.|+...+.|.. +...+..+...|... ++.+
T Consensus 160 ~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 160 HLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp GHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHH
Confidence 3333444443332 23336666666677777 777777777777776543 444444455555443 5777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHH
Q 006630 401 ECVELMGEMRKIGCVPDVSNYNVVIRL-A--CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG-----CLIEA 472 (638)
Q Consensus 401 ~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----~~~~A 472 (638)
+|.+.|+... . -+...+..|..+ | ...+++++|...|++..+.| +...+..|...|. .| ++++|
T Consensus 235 ~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 7777777766 2 344455555555 3 35678888888888877765 4566666776666 44 78888
Q ss_pred HHHHHHHHhCCCCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHH
Q 006630 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLR----AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS----NGHVKEA 544 (638)
Q Consensus 473 ~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A 544 (638)
+.+|++.. .| +......|...|.. ..++++|...|++..+.| +......|...|.. ..+.++|
T Consensus 307 ~~~~~~Aa-~g-----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 307 EAHFEKAV-GR-----EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHTTT-TT-----CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHh-CC-----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 88888776 43 33344455555554 337888888888887765 34455556666653 4578889
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc
Q 006630 545 CSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAER 593 (638)
Q Consensus 545 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 593 (638)
..+|+...+.| .++.......+......++.++|..++++..+..+..
T Consensus 378 ~~~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~~~~ 425 (452)
T 3e4b_A 378 YVFSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQELAARGTL 425 (452)
T ss_dssp HHHHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcccc
Confidence 99888888766 3444333333333334467788888888888877764
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.66 E-value=4.6e-15 Score=143.48 Aligned_cols=243 Identities=8% Similarity=-0.047 Sum_probs=153.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006630 361 SRKIDRCYEILDSMIQRGILP---NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437 (638)
Q Consensus 361 ~g~~~~A~~~~~~m~~~~~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 437 (638)
.|++++|+..|+++.+..... +..++..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 355666666666666542111 23455555666666666666666666666543 34566667777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006630 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517 (638)
Q Consensus 438 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 517 (638)
...|+++.+.. +.+...|..+...|...|++++|+..|+++.+.. |+.......+..+...|++++|...+++..
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD----PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 77777776654 4456677777777777777777777777777654 332233333444456677778887777766
Q ss_pred HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 518 TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-----PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 518 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
... +++...| .++..+...++.++|+..++++.+. .|+ ...|..+...+...|++++|...++++++.+|+
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATD--NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc--cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch
Confidence 552 2233333 3566666777777777777776543 222 456777777888888888888888888888876
Q ss_pred ccccc-chhhhhhhhhhHHHHH
Q 006630 593 RQITF-KMYKRRGERDLKEKAK 613 (638)
Q Consensus 593 ~~~~~-~~y~~~g~~~~A~~~~ 613 (638)
+...+ ..+...|++++|.+.+
T Consensus 248 ~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 NFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TCHHHHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHHHHHHHhhHHHH
Confidence 65544 4677778888877765
No 42
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.66 E-value=3.4e-12 Score=137.24 Aligned_cols=432 Identities=8% Similarity=-0.008 Sum_probs=286.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHhchhCC-CCCCHH
Q 006630 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM---VKKAIEVLDEMPKYG-CEPDEF 210 (638)
Q Consensus 135 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~---~~~A~~~~~~m~~~g-~~~~~~ 210 (638)
+.|...|..++..+.+.+.++.+..+|+++....|. ....|..-+..-.+.+. ++.+.++|++.+... .+|++.
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~--~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPL--MANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 568888888888888888888888888888888764 67778888887777787 888888888887653 137888
Q ss_pred HHHHHHHHHHhCCCH--------HHHHHHHHHHhcc----CCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 006630 211 VFGCLLDALCKNSSV--------KEAAKLFDEMRER----FKPSLRHFTSLLYGWCK---------EGKLVEAKYVLVQM 269 (638)
Q Consensus 211 ~~~~li~~~~~~g~~--------~~A~~~~~~~~~~----~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m 269 (638)
.|..-+....+.++. +...++|+..... .+.+...|...+..... .++++.+..+|++.
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 887777766555443 3344677765432 23345677777765442 34566777788777
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC--
Q 006630 270 KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS--GCE-- 345 (638)
Q Consensus 270 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~-- 345 (638)
+......-..+|......-...+ ...+.+++.+ ...+++.|...+.++... ++.
T Consensus 221 L~iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e---------------------~~~~y~~Ar~~~~e~~~~~~~l~r~ 278 (679)
T 4e6h_A 221 LCQPMDCLESMWQRYTQWEQDVN-QLTARRHIGE---------------------LSAQYMNARSLYQDWLNITKGLKRN 278 (679)
T ss_dssp TTSCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred HhCccHHHHHHHHHHHHHHHhcC-cchHHHHHHH---------------------hhHHHHHHHHHHHHHHHHHHhHhhc
Confidence 74211111223322211111101 0111111111 011233344444433211 110
Q ss_pred -------------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006630 346 -------------A-----D---VVTYTTLISGFCKSR-------KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE 397 (638)
Q Consensus 346 -------------~-----~---~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 397 (638)
| + ...|...+.---..+ ..+.+..+|++.+.... -+...|...+.-+...|
T Consensus 279 ~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~ 357 (679)
T 4e6h_A 279 LPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQGEKN 357 (679)
T ss_dssp CCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHS
T ss_pred cccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcC
Confidence 1 0 244555554332222 12345677888877533 36777877788788888
Q ss_pred CHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---------CCCC------------HHH
Q 006630 398 ELEECV-ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS---------LSPG------------TDS 455 (638)
Q Consensus 398 ~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~~p~------------~~~ 455 (638)
+.++|. ++++..... ++.+...+-..+...-+.|++++|.++|+.+.+.. -.|+ ...
T Consensus 358 ~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~v 436 (679)
T 4e6h_A 358 TDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYV 436 (679)
T ss_dssp CCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHH
Confidence 888896 999998874 46677778888888999999999999999887531 0132 246
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006630 456 FVVMVHGFLGQGCLIEACEYFKEMVGR-GLLSAPQYGTLKALLNSLLRA-QKVEMAKDVWSCIVTKGCELNVYAWTIWIH 533 (638)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~p~~~~~~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 533 (638)
|...+....+.|..+.|..+|.++.+. + ......|...+..-.+. ++.+.|..+|+..++. ++-+...|...++
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~---~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~ 512 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRLKK---LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTGG---GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHH
Confidence 888888888899999999999999887 3 23334454433333344 4589999999999887 4446777888999
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 534 SLFSNGHVKEACSYCLDMMDADVMP--QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 534 ~~~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
.....|+.+.|..+|++.+.....+ ....|...+..-.+.|+.+.+..+.+++.+..|+++..
T Consensus 513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 8889999999999999998753222 23568888888889999999999999999999997654
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.66 E-value=1.3e-14 Score=140.16 Aligned_cols=240 Identities=7% Similarity=0.018 Sum_probs=157.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHH
Q 006630 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP--DVSNYNVVIRLACK 430 (638)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~ 430 (638)
.....+...|++++|+..|++..+.... +...+..+...+...|++++|.+.++.+.+....+ ....|..+...|..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3444455555566666655555554321 23345555555556666666666666555521111 12336666777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 006630 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510 (638)
Q Consensus 431 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 510 (638)
.|++++|+..|++..+.. +.+...|..+...|...|++++|+..|++..+.. +.+..++..+...+...+++++|.
T Consensus 87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT---TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS---CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC---CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777776654 4455677777888888888888888887777664 345556666663444556888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHhC-CCCCC------HHHHHHHHHHHHhhcCHHHHH
Q 006630 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGH---VKEACSYCLDMMDA-DVMPQ------PDTFAKLMRGLKKLYNRQIAA 580 (638)
Q Consensus 511 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~-~~~p~------~~t~~~ll~~~~~~g~~~~A~ 580 (638)
+.|+++++.. +.+...+..+..++...|+ +++|...++++++. .-.|+ ...|..+...+...|++++|.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888887762 2246667777777777777 77788888777652 11233 246777888888899999999
Q ss_pred HHHHHHHHHHHhcccccc
Q 006630 581 EITEKVRKMAAERQITFK 598 (638)
Q Consensus 581 ~~~~~~~~~~p~~~~~~~ 598 (638)
+.++++++++|+++.+..
T Consensus 242 ~~~~~al~~~p~~~~a~~ 259 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAID 259 (272)
T ss_dssp HHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHhcCccHHHHHH
Confidence 999999999999887643
No 44
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=1.9e-14 Score=133.84 Aligned_cols=199 Identities=18% Similarity=0.091 Sum_probs=118.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHH
Q 006630 136 HSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCL 215 (638)
Q Consensus 136 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l 215 (638)
++...+..+...+.+.|++++|...|++....+|. +...+..+...+.+.|++++|+..|++..+.. +.+...+..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ--DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 34556666777777777777777777777766654 56666667777777777777777777766653 3455666666
Q ss_pred HHHHHhC-----------CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006630 216 LDALCKN-----------SSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL 284 (638)
Q Consensus 216 i~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 284 (638)
..+|.+. |++++|+..|++..+..|.+...|..+...|...|++++|+..|++..+.. .+...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 6666666 666666666666665555566666666666666666666666666666554 455566666
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340 (638)
Q Consensus 285 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 340 (638)
..++...|++++|...++...+.. +.+...+..+...+.+.|++++|...|++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 666666666666666666665542 2244555556666666666666666655543
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=5.8e-14 Score=141.57 Aligned_cols=241 Identities=10% Similarity=0.072 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006630 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE-LEECVELMGEMRKIGCVPDVSNYNVVIR 426 (638)
Q Consensus 348 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~ 426 (638)
...|+.+...+.+.|++++|+..+++.++.... +...|..+...+...|+ +++|+..++++++.. +.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 355666777777888888888888888875433 56777777888888886 888888888888765 557788888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHH-cCC
Q 006630 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR-AQK 505 (638)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~-~g~ 505 (638)
+|.+.|++++|+..|+++.+.+ +-+...|..+..++...|++++|+..|+++++.. +.+...|..+..++.. .|.
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCc
Confidence 8999999999999999998876 6678899999999999999999999999999887 4677888888888888 566
Q ss_pred HHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhc----
Q 006630 506 VEMA-----KDVWSCIVTKGCELNVYAWTIWIHSLFSNG--HVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLY---- 574 (638)
Q Consensus 506 ~~~A-----~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g---- 574 (638)
.++| +..|++++..... +...|+.+..++...| ++++|++.+.++ +. ...+...+..++..|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 5777 5888888886322 6778999999999988 689999999887 32 2345677888888888874
Q ss_pred ----C-HHHHHHHHHHH-HHHHHhccccc
Q 006630 575 ----N-RQIAAEITEKV-RKMAAERQITF 597 (638)
Q Consensus 575 ----~-~~~A~~~~~~~-~~~~p~~~~~~ 597 (638)
+ +++|.++++++ ++++|.+...+
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP~r~~~w 356 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDTIRKEYW 356 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCchhHHHH
Confidence 3 58999999999 99999877664
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=1.3e-13 Score=131.33 Aligned_cols=208 Identities=13% Similarity=0.015 Sum_probs=144.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006630 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464 (638)
Q Consensus 385 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 464 (638)
.+..+...+...|++++|.+.++.+.+.. +.+...+..+...|...|++++|...|+++.+.. +.+...+..+...|.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 34444455555555555555555555442 3455566666677777777777777777776654 445667777777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 006630 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544 (638)
Q Consensus 465 ~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 544 (638)
..|++++|+++|+++...+. .+.+...+..+...+...|++++|...++++.+.. +.+...|..++..+...|++++|
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTL-YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhHHHHHHHHHHHHHhCcc-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 78888888888877776211 02345566777777888888888888888877763 22567777888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 545 CSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 545 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
..+++++++.. ..+...+..+...+...|++++|.++++++++..|+++...
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 88888877542 34566677777788888888888888888888888876653
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.62 E-value=2.6e-14 Score=135.36 Aligned_cols=210 Identities=16% Similarity=0.135 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006630 384 LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463 (638)
Q Consensus 384 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 463 (638)
.++..+...+...|++++|..+++++.+.. +.+...+..+...|.+.|++++|...|+++.+.. +.+...+..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 344455555566666666666666665543 4456666667777777777777777777776654 44667777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 006630 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543 (638)
Q Consensus 464 ~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 543 (638)
...|++++|+++|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG---MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT---CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 78888888888888777765 3456677777777888888888888888877653 2356777788888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccccchh
Q 006630 544 ACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMY 600 (638)
Q Consensus 544 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~y 600 (638)
|+..++++++.. ..+..++..+...+...|++++|.+.++++++.+|+++..+..+
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 233 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAK 233 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHH
Confidence 888888877642 33466788888888888888888888888888888877765433
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.61 E-value=1.6e-12 Score=125.52 Aligned_cols=230 Identities=10% Similarity=0.013 Sum_probs=164.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006630 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK----KEELEECVELMGEMRKIGCVPDVSNYN 422 (638)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 422 (638)
+..++..+...|...|++++|+..|++..+. -+...+..+...+.. .+++++|...+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4455556666666666666666666666652 234555556666666 677777777777766654 556666
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCCcHHHHH
Q 006630 423 VVIRLACK----LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG----QGCLIEACEYFKEMVGRGLLSAPQYGTLK 494 (638)
Q Consensus 423 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~p~~~~~~ 494 (638)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~ 150 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-----DGDGCT 150 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----CHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-----cHHHHH
Confidence 67777777 777788888877777654 56677777777777 788888888888887765 233555
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006630 495 ALLNSLLR----AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS----NGHVKEACSYCLDMMDADVMPQPDTFAKL 566 (638)
Q Consensus 495 ~ll~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 566 (638)
.+...+.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ | ...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--N-GGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--C-HHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--C-HHHHHHH
Confidence 66666776 788888888888887753 56677778888888 888888888888887753 2 5667777
Q ss_pred HHHHHh----hcCHHHHHHHHHHHHHHHHhcccc
Q 006630 567 MRGLKK----LYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 567 l~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
...+.. .+++++|.+.++++++.+|+++..
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~ 258 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACD 258 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 888887 888899999999998888876543
No 49
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.61 E-value=1.2e-13 Score=143.76 Aligned_cols=378 Identities=10% Similarity=0.017 Sum_probs=248.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHhchhCCCCCCHHHHHHHHHHH
Q 006630 143 ALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV---KKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219 (638)
Q Consensus 143 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~---~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 219 (638)
.+...+.+.|++++|+.+|++..+.+ +...+..+...|...|+. ++|+..|++..+. ++..+..|..++
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 46677888999999999999988764 223455566666777877 8999999988753 566677777756
Q ss_pred HhCC-----CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006630 220 CKNS-----SVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLV---EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM 291 (638)
Q Consensus 220 ~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 291 (638)
...| ++++|...|++...... ...+..|...|...+..+ ++.+.+......| +...+..+...|...
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~--~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGE--GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTC--SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 6655 78899999998876433 337788888888766544 4555566655544 345667788888888
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCH
Q 006630 292 GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRME---KMEEANRAFVEMERSGCEADVVTYTTLISGFCKS----RKI 364 (638)
Q Consensus 292 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~ 364 (638)
+.++.+......+.+.-...+...+..|...|.+.| +.++|++.|++..+.| .++...+..|...|... +++
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCH
Confidence 865555544333333222224448888999999999 9999999999999887 55666666777777654 799
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-----CHHH
Q 006630 365 DRCYEILDSMIQRGILPNQLTYLHIMLA-H--EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG-----ELKE 436 (638)
Q Consensus 365 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~ 436 (638)
++|+.+|+... .| +...+..+... + ...++.++|.+.|++..+.| +...+..|..+|. .| ++++
T Consensus 234 ~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 234 KTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 99999999987 43 44556666655 3 56899999999999999876 6777778888887 55 9999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHH----cCCHHH
Q 006630 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLG----QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR----AQKVEM 508 (638)
Q Consensus 437 A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~ 508 (638)
|...|++.. . .+...+..|...|.. ..++++|..+|++..+.|. |.. ...|...|.. ..+.++
T Consensus 306 A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A--~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 306 AEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSA--DFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp HHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTH--HHHHHHHHHSCTTBCCCHHH
T ss_pred HHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHH--HHHHHHHHHhCCCCCCCHHH
Confidence 999999887 3 456778888877776 4499999999999999873 543 3345555553 458999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006630 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552 (638)
Q Consensus 509 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 552 (638)
|...|+...+.|.. +.......+......++..+|..+.++..
T Consensus 377 A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 377 AYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 99999999887632 22222222222223345556666655543
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=2.9e-13 Score=126.18 Aligned_cols=210 Identities=10% Similarity=-0.005 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006630 384 LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463 (638)
Q Consensus 384 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 463 (638)
..+..+...+...|++++|.+.++.+.+.. +.+...+..+...|...|++++|...|+++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 344455555555666666666665555542 3345566666666777777777777777766654 44566777777777
Q ss_pred Hhc-CCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 006630 464 LGQ-GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542 (638)
Q Consensus 464 ~~~-g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 542 (638)
... |++++|+.+|+++...+. .+.+...+..+...+...|++++|...++++.+.. +.+...+..++.++...|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPT-YPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTT-CSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 777 777777777777776211 12335566677777777788888888877777652 224667777777788888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 543 EACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 543 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
+|..+++++++.....+...+..+...+...|+.+.|..+++.+.+..|+++...
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 219 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQ 219 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHH
Confidence 8888887776642113555666666666777888888888888877777776553
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=3.4e-13 Score=125.74 Aligned_cols=201 Identities=12% Similarity=0.070 Sum_probs=108.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHH
Q 006630 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL 216 (638)
Q Consensus 137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li 216 (638)
+..+|..+...+...|++++|...|+++....|. +...+..+...+...|++++|+..++++.+.. +.+..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK--NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc--chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 4455666666666666666666666666665543 45555556666666666666666666655442 33455555555
Q ss_pred HHHHhC-CCHHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006630 217 DALCKN-SSVKEAAKLFDEMRE--RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293 (638)
Q Consensus 217 ~~~~~~-g~~~~A~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 293 (638)
..|... |++++|...|+++.. ..+.+...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 566666 666666666655554 223334555555555555555555555555555432 2234445555555555555
Q ss_pred HhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341 (638)
Q Consensus 294 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (638)
+++|.+.++.+.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 555555555554432212344444444444555555555555555443
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=4.9e-13 Score=127.39 Aligned_cols=200 Identities=15% Similarity=0.045 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 006630 138 YDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217 (638)
Q Consensus 138 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 217 (638)
..+|..+...+...|++++|...|+++....|. +...+..+...+...|++++|++.++++.+.. +.+..++..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS--SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHH
Confidence 566778888888889999999999888877654 56777888888888888888888888877654 346677778888
Q ss_pred HHHhCCCHHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHh
Q 006630 218 ALCKNSSVKEAAKLFDEMRE--RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295 (638)
Q Consensus 218 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 295 (638)
.|...|++++|.+.|+++.. ..+.+...+..+...|...|++++|.+.|+++.+.. +.+...+..+...+...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 88888888888888888766 445566777777777888888888888887777654 335666777777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006630 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342 (638)
Q Consensus 296 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (638)
+|...++.+.+.. +.+...+..+...+.+.|+.++|.+.++++.+.
T Consensus 193 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7777777776643 235556666777777777777777777777665
No 53
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.60 E-value=7.4e-12 Score=134.61 Aligned_cols=443 Identities=11% Similarity=0.056 Sum_probs=296.3
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCC---HHHHH
Q 006630 153 KFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS---VKEAA 229 (638)
Q Consensus 153 ~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~A~ 229 (638)
...+.+..|++....+|. +..+|..++..+.+.+.++.+..+|+++... ++.....|...+..-.+.|. ++.+.
T Consensus 47 ~~~d~i~~lE~~l~~np~--d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPT--DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CCSCHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred CCHHHHHHHHHHHHHCcC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 345566677777777764 8999999999999999999999999999876 46677889888999888888 99999
Q ss_pred HHHHHHhccCC--CCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHH-CCC-CC-CHHHHHHHHHHHH-------
Q 006630 230 KLFDEMRERFK--PSLRHFTSLLYGWCKEGKL--------VEAKYVLVQMKD-AGF-EP-DIVVYNNLLSGYA------- 289 (638)
Q Consensus 230 ~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p-~~~~~~~ll~~~~------- 289 (638)
.+|++.....+ |++..|...+....+.++. +...++|+..+. .|. .+ +...|...+....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 99999988763 8999999988877766654 334467776554 465 44 3567777776543
Q ss_pred --HcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006630 290 --QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367 (638)
Q Consensus 290 --~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 367 (638)
..++++.+.++|+.++......-..+|......--..+. ..+.+++.+. ..+++.|
T Consensus 204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~~~y~~A 261 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------SAQYMNA 261 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------HHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------hHHHHHH
Confidence 234567778888887753111111223222111111010 0122222111 1123333
Q ss_pred HHHHHHHHHC--CCC---------------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCC
Q 006630 368 YEILDSMIQR--GIL---------------P-----N---QLTYLHIMLAHEKKE-------ELEECVELMGEMRKIGCV 415 (638)
Q Consensus 368 ~~~~~~m~~~--~~~---------------p-----~---~~t~~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~ 415 (638)
...+.++... ++. | + ...|...+.---..+ ..+.+..+|+++... ++
T Consensus 262 r~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p 340 (679)
T 4e6h_A 262 RSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VC 340 (679)
T ss_dssp HHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cC
Confidence 3434332211 110 1 1 122333333222221 134456778888765 36
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------CCC
Q 006630 416 PDVSNYNVVIRLACKLGELKEAV-NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-------LSA 487 (638)
Q Consensus 416 ~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------~~~ 487 (638)
.+...|-..+..+...|+.++|. .+|++.... ++.+...|...+......|++++|.++|+.++.... ...
T Consensus 341 ~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~ 419 (679)
T 4e6h_A 341 FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDD 419 (679)
T ss_dssp TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 68888988899889999999997 999999875 366777788889999999999999999999986410 001
Q ss_pred C------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHhC
Q 006630 488 P------------QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG-HVKEACSYCLDMMDA 554 (638)
Q Consensus 488 p------------~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~ 554 (638)
| ...+|...++...+.|+++.|+.+|..+++.........|...+..-.+.| +.+.|.++|+..++.
T Consensus 420 p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 420 PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3 234678888888899999999999999987511223444544444444444 589999999999875
Q ss_pred CCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh---ccccc----chhhhhhhhhhHHHHHhhhhhhhhhh
Q 006630 555 DVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE---RQITF----KMYKRRGERDLKEKAKKQVDGRKRRA 623 (638)
Q Consensus 555 ~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~----~~y~~~g~~~~A~~~~~~~~~~~~~~ 623 (638)
..-+...|...+......|+.+.|+.+++++++..|+ ...++ +.-...|+.+.+.++.+++.+..+..
T Consensus 500 -~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 500 -FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp -HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred -CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 2335666778888888889999999999999998873 33444 34456799999999999977766653
No 54
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=3.6e-13 Score=129.91 Aligned_cols=244 Identities=10% Similarity=0.018 Sum_probs=174.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 006630 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP--NQLTYLHIMLA 392 (638)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~ 392 (638)
.+......+...|++++|...|++..+.. +.+...|..+...|...|++++|+..+++..+.+..| ...++..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34455666777777777777777777653 2234466677777777777777777777777633222 23346777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006630 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472 (638)
Q Consensus 393 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 472 (638)
+...|++++|.+.++...+.. +.+..++..+...|...|++++|...|++..+.. +.+...|..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888777654 4466778888888888999999999998888764 55667777777344445589999
Q ss_pred HHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHc-CCCCC------HHHHHHHHHHHHccCCHH
Q 006630 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK---VEMAKDVWSCIVTK-GCELN------VYAWTIWIHSLFSNGHVK 542 (638)
Q Consensus 473 ~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~-~~~p~------~~~~~~li~~~~~~g~~~ 542 (638)
+..|+++.+.. +.+...+..+...+...|+ +++|...++++.+. ...|+ ...|..+...|...|+++
T Consensus 162 ~~~~~~a~~~~---p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 162 DSSFVKVLELK---PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHS---TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhC---ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 99999988876 3456677777777887787 88888888888765 11233 256778888999999999
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHH
Q 006630 543 EACSYCLDMMDADVMPQ-PDTFAKL 566 (638)
Q Consensus 543 ~A~~~~~~m~~~~~~p~-~~t~~~l 566 (638)
+|...|+++++. .|+ ...+..+
T Consensus 239 ~A~~~~~~al~~--~p~~~~a~~~l 261 (272)
T 3u4t_A 239 KADAAWKNILAL--DPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHhc--CccHHHHHHHh
Confidence 999999998865 454 3334433
No 55
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.59 E-value=4.2e-13 Score=135.27 Aligned_cols=234 Identities=9% Similarity=0.046 Sum_probs=192.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHhchhCCCCCCHHHHHHH
Q 006630 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM-VKKAIEVLDEMPKYGCEPDEFVFGCL 215 (638)
Q Consensus 137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~g~~~~~~~~~~l 215 (638)
+..+|+.+..++.+.|++++|+..|++....+|. +..+|+.+...+...|+ +++|+..|+++++.. +.+..+|+.+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~--~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~ 172 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA--NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc--CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 4567888889999999999999999999999876 78889999999999997 999999999998875 4578899999
Q ss_pred HHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCH
Q 006630 216 LDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ-MGKM 294 (638)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~ 294 (638)
..++.+.|++++|+..|+++....|.+...|..+..++.+.|++++|+..|+++++.. +-+...|+.+..++.. .|..
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999988888899999999999999999999999999999875 4577889999999988 5555
Q ss_pred hHH-----HHHHHHHHHcCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----
Q 006630 295 TDA-----FELLKEMRRKGCDPNANSYTVLIQALCRME--KMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR----- 362 (638)
Q Consensus 295 ~~a-----~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----- 362 (638)
++| ++.+++.++.... +...|+.+...+.+.| ++++|.+.+.++ +.. +.+...+..+...|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhccccc
Confidence 777 4777777775332 5677888888888777 578888888777 332 445677778888887764
Q ss_pred ----CHHHHHHHHHHH-HHC
Q 006630 363 ----KIDRCYEILDSM-IQR 377 (638)
Q Consensus 363 ----~~~~A~~~~~~m-~~~ 377 (638)
..++|+++|+++ .+.
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEK 348 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHh
Confidence 247888888887 443
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.58 E-value=7.6e-14 Score=134.85 Aligned_cols=223 Identities=13% Similarity=-0.009 Sum_probs=144.0
Q ss_pred hcCChhHHHHHHHHHHhcCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHH
Q 006630 150 KMRKFGAVWALMEEMRKEKPQL--ITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227 (638)
Q Consensus 150 ~~~~~~~A~~~~~~m~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 227 (638)
..|++++|+..|+++....+.. .+..++..+...+...|++++|+..|+++.+.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 4467778888887777653211 134566677777777778888877777777653 3456777777777777777777
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 006630 228 AAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307 (638)
Q Consensus 228 A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 307 (638)
|...|++.....|.+..+|..+...|.+.|++++|...|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 777777777666666777777777777777777777777777765 344334444444555667777777777666654
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE---ADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377 (638)
Q Consensus 308 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 377 (638)
. +++...+ .++..+...++.++|...+.+....... .+...|..+...|...|++++|...|++..+.
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 2 2233333 3555666666677777777666543100 01355566666666666666666666666654
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.57 E-value=1.8e-13 Score=129.49 Aligned_cols=201 Identities=11% Similarity=0.032 Sum_probs=120.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHH
Q 006630 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL 216 (638)
Q Consensus 137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li 216 (638)
....|..+...+...|++++|...|+++....|. +...+..+...+...|++++|+..++++.+.. +.+..++..+.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE--DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 4455666777777778888888888777776554 56667777777777777777777777776553 34566677777
Q ss_pred HHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhH
Q 006630 217 DALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296 (638)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 296 (638)
..|...|++++|...|+++.+..+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777777766556666777777777777777777777777766543 3355566666666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006630 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342 (638)
Q Consensus 297 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (638)
|.+.++++.+.. +.+..++..+...|.+.|++++|...|+++.+.
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 666666665542 224555666666666666666666666666554
No 58
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.57 E-value=1.1e-11 Score=119.75 Aligned_cols=224 Identities=12% Similarity=0.033 Sum_probs=105.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHcCCCCCHHhHH
Q 006630 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ----MGKMTDAFELLKEMRRKGCDPNANSYT 317 (638)
Q Consensus 242 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~ 317 (638)
+..++..+...|...|++++|...|++..+. -+..++..+...|.. .+++++|.+.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3444444444555555555555555554442 233344444444444 455555555555544442 344444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006630 318 VLIQALCR----MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK----SRKIDRCYEILDSMIQRGILPNQLTYLHI 389 (638)
Q Consensus 318 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 389 (638)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 44444544 555555555555554432 44444444444544 455555555555544433 23333344
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006630 390 MLAHEK----KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK----LGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461 (638)
Q Consensus 390 l~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 461 (638)
...+.. .+++++|...+++..+.+ +...+..+..+|.. .+++++|...|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 444443 444444444444444432 23344444444444 455555555555544432 1334444444
Q ss_pred HHHh----cCCHHHHHHHHHHHHhCC
Q 006630 462 GFLG----QGCLIEACEYFKEMVGRG 483 (638)
Q Consensus 462 ~~~~----~g~~~~A~~~~~~m~~~~ 483 (638)
.|.. .+++++|++.|++..+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 4444 455555555555554443
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.57 E-value=5.2e-13 Score=120.50 Aligned_cols=174 Identities=11% Similarity=0.047 Sum_probs=150.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHH
Q 006630 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495 (638)
Q Consensus 416 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ 495 (638)
.+..+|..+...|.+.|++++|+..|++..+.+ +-+...|..+...|...|++++|+..+....... +.+...+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~ 78 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD---TTSAEAYYI 78 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---chhHHHHHH
Confidence 356788899999999999999999999998876 6678899999999999999999999999998876 356667777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcC
Q 006630 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN 575 (638)
Q Consensus 496 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 575 (638)
+...+...++++.|...+.++.... +.+...+..+..+|.+.|++++|++.|++.++.. +.+...|..+..++.+.|+
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCC
Confidence 8888899999999999999998863 3367888999999999999999999999998752 3357789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 006630 576 RQIAAEITEKVRKMAAERQI 595 (638)
Q Consensus 576 ~~~A~~~~~~~~~~~p~~~~ 595 (638)
+++|++.++++++++|+++.
T Consensus 157 ~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 157 RDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHhCCccCHH
Confidence 99999999999999998754
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.55 E-value=4.2e-12 Score=125.00 Aligned_cols=226 Identities=7% Similarity=-0.025 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006630 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHE-------KKEEL-------EECVELMGEMRKIGCVPDVSNYNVVIRLACK 430 (638)
Q Consensus 365 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~-------~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 430 (638)
++|+..|++...... -+...|..++..+. ..|++ ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 456666666665422 24455555554443 34664 7888888888873124466688888888889
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHH-HcCCHHH
Q 006630 431 LGELKEAVNVWNEMEAASLSPGTD-SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL-RAQKVEM 508 (638)
Q Consensus 431 ~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~-~~g~~~~ 508 (638)
.|++++|..+|+++.+.. +.+.. .|..++..+.+.|++++|..+|++.++.. +++...|........ ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST---TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCCHHH
Confidence 999999999999988753 22344 78888888889999999999999998875 344455544433322 3699999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 006630 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD-VMP--QPDTFAKLMRGLKKLYNRQIAAEITEK 585 (638)
Q Consensus 509 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~t~~~ll~~~~~~g~~~~A~~~~~~ 585 (638)
|..+|+++++.. +-+...|..++..+.+.|++++|..+|++.++.. +.| ....|..++......|+.+.|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998763 2367889999999999999999999999998853 455 356788888888889999999999999
Q ss_pred HHHHHHhcccc
Q 006630 586 VRKMAAERQIT 596 (638)
Q Consensus 586 ~~~~~p~~~~~ 596 (638)
+++..|+++..
T Consensus 267 a~~~~p~~~~~ 277 (308)
T 2ond_A 267 RFTAFREEYEG 277 (308)
T ss_dssp HHHHTTTTTSS
T ss_pred HHHHccccccc
Confidence 99999987654
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.55 E-value=1.8e-13 Score=143.19 Aligned_cols=214 Identities=12% Similarity=0.015 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006630 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL-KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477 (638)
Q Consensus 399 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 477 (638)
++++.+.++...... +.+...+..+...|...|++ ++|+..|++..+.+ +.+...|..+...|...|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455556666555432 45677778888888888888 88888888888765 5567888888888888899999999888
Q ss_pred HHHhCCCCCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--------CC
Q 006630 478 EMVGRGLLSAPQYGTLKALLNSLLRA---------QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN--------GH 540 (638)
Q Consensus 478 ~m~~~~~~~~p~~~~~~~ll~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~ 540 (638)
+.++.. |+...+..+...+... |++++|...|+++++... .+...|..+..+|... |+
T Consensus 162 ~al~~~----p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 162 GALTHC----KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHTTC----CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHhhC----CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccch
Confidence 888775 5567788888888888 899999999999888732 3677888888888888 88
Q ss_pred HHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhHHHH
Q 006630 541 VKEACSYCLDMMDADVMP----QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLKEKA 612 (638)
Q Consensus 541 ~~~A~~~~~~m~~~~~~p----~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~~~ 612 (638)
+++|+..|+++++. .| +...|..+..++...|++++|.+.++++++++|+++.++ .++...|++++|.+.
T Consensus 237 ~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 237 SQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998875 45 678899999999999999999999999999999988764 688899999999998
Q ss_pred Hhhhhhhhh
Q 006630 613 KKQVDGRKR 621 (638)
Q Consensus 613 ~~~~~~~~~ 621 (638)
+.+++.+..
T Consensus 315 ~~~~~~~~l 323 (474)
T 4abn_A 315 KGKTKPKKL 323 (474)
T ss_dssp TTTCCHHHH
T ss_pred hccccCccH
Confidence 888755543
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.53 E-value=2.7e-13 Score=139.03 Aligned_cols=299 Identities=11% Similarity=0.011 Sum_probs=181.4
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-C
Q 006630 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN----ANSYTVLIQALCRMEKMEEANRAFVEMERS----GCEA-D 347 (638)
Q Consensus 277 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~ 347 (638)
....+......+...|++++|...++++.+.+.. + ..++..+...|...|++++|...|++.... +-.| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3444555555556666666666666665554211 2 234555555555666666666665554321 1001 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006630 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL-PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426 (638)
Q Consensus 348 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 426 (638)
..++..+...|...|++++|+..+++..+.... ++. .....++..+..
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~ 135 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGN 135 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHHH
Confidence 233444445555555555555555544332000 000 001234555556
Q ss_pred HHHHcCC--------------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006630 427 LACKLGE--------------------LKEAVNVWNEMEAA----SLSP-GTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481 (638)
Q Consensus 427 ~~~~~g~--------------------~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (638)
.|...|+ +++|...+++..+. +..| ....+..+...|...|++++|+..+++...
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6666666 66776666654321 1111 134677788888888999999988888775
Q ss_pred CCCCCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006630 482 RGLLSAPQ----YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC-ELN----VYAWTIWIHSLFSNGHVKEACSYCLDMM 552 (638)
Q Consensus 482 ~~~~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 552 (638)
.... .++ ..++..+...+...|++++|...++++..... .++ ..++..+...|...|++++|...+++.+
T Consensus 216 ~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 216 IAKE-FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHh-cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3210 122 23677788888999999999999998875410 111 4577888899999999999999999886
Q ss_pred hCC-CCCC----HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc------c----chhhhhhhhhh
Q 006630 553 DAD-VMPQ----PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT------F----KMYKRRGERDL 608 (638)
Q Consensus 553 ~~~-~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~------~----~~y~~~g~~~~ 608 (638)
+.. -.++ ..++..+...+...|++++|...+++++++.++.... + .+|...|+...
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 521 0122 4567888889999999999999999999997664321 1 56777776633
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=3.4e-13 Score=138.73 Aligned_cols=277 Identities=11% Similarity=0.019 Sum_probs=149.8
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHH
Q 006630 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA----NSYTVLIQALCRMEKMEEANRAFVEMERS----GC-EADVVTYT 352 (638)
Q Consensus 282 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~ 352 (638)
..+...+...|++++|...++++.+.+.. +. .++..+...|...|++++|...|++..+. +. ......+.
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 33444555555555555555555554211 21 24445555555555555555555554431 00 11123344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHc
Q 006630 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG-CVPDVSNYNVVIRLACKL 431 (638)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~ 431 (638)
.+...|...|++++|+..+++..+.. .+.+ .+....++..+...|...
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHHHHHHHc
Confidence 44444444555555555444433210 0000 011233455555566666
Q ss_pred CC-----------------HHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc
Q 006630 432 GE-----------------LKEAVNVWNEMEAA----SL-SPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489 (638)
Q Consensus 432 g~-----------------~~~A~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~ 489 (638)
|+ +++|+..+++..+. +. ......+..+...|...|++++|+.+|++..+.... .++
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~ 258 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE-FGD 258 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTC
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh-cCC
Confidence 66 66666666554321 10 111236666777777778888887777776653210 011
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC
Q 006630 490 ----YGTLKALLNSLLRAQKVEMAKDVWSCIVTKG--CE---LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV-MPQ 559 (638)
Q Consensus 490 ----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~ 559 (638)
..++..+...+...|++++|...++++.... .. .....+..+..+|...|++++|..++++.++... .++
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 2256666777777788888888877776541 00 1145566777777888888888888777654210 111
Q ss_pred ----HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 006630 560 ----PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAA 591 (638)
Q Consensus 560 ----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 591 (638)
..++..+...+...|++++|.+.+++++++.+
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 33566777777778888888888887777644
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=4.8e-13 Score=137.65 Aligned_cols=204 Identities=13% Similarity=-0.010 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHH
Q 006630 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAA----S-LSPGTDSFVVMVHGFLGQGC-----------------LIEACEY 475 (638)
Q Consensus 418 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~p~~~~~~~li~~~~~~g~-----------------~~~A~~~ 475 (638)
...+..+...|...|++++|...|++..+. + .+.....+..+...|...|+ +++|+++
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 345566666777777777777777766543 1 01223578888899999999 9999999
Q ss_pred HHHHHhCCC--C-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHH
Q 006630 476 FKEMVGRGL--L-SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC-ELN----VYAWTIWIHSLFSNGHVKEACSY 547 (638)
Q Consensus 476 ~~~m~~~~~--~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~ 547 (638)
+++..+... . .+....++..+...+...|++++|...++++.+... .++ ...+..+..+|...|++++|...
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 988765310 0 011234777788889999999999999999876511 112 23788899999999999999999
Q ss_pred HHHHHhCCC-CCC----HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccc------cc----chhhhhhhhhhHHHH
Q 006630 548 CLDMMDADV-MPQ----PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI------TF----KMYKRRGERDLKEKA 612 (638)
Q Consensus 548 ~~~m~~~~~-~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~----~~y~~~g~~~~A~~~ 612 (638)
++++++... ..+ ..++..+...+...|++++|...++++++..++... .+ .+|...|++++|.+.
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 998875210 111 456888899999999999999999999999877543 22 688999999999999
Q ss_pred Hhhhhhhhh
Q 006630 613 KKQVDGRKR 621 (638)
Q Consensus 613 ~~~~~~~~~ 621 (638)
+++..+..+
T Consensus 366 ~~~al~~~~ 374 (411)
T 4a1s_A 366 AEQHLQLAX 374 (411)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHh
Confidence 998544443
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.49 E-value=2.4e-11 Score=119.47 Aligned_cols=218 Identities=6% Similarity=0.020 Sum_probs=130.5
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHhchh-CCCCCCHHHHHHHHHHH
Q 006630 155 GAVWALMEEMRKEKPQLITTEVFVILMRRFAS-------ARMV-------KKAIEVLDEMPK-YGCEPDEFVFGCLLDAL 219 (638)
Q Consensus 155 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~-------~~~~-------~~A~~~~~~m~~-~g~~~~~~~~~~li~~~ 219 (638)
++|..+|++.....|. ++..|..++..+.. .|++ ++|..+|++..+ .. +.+...|..++..+
T Consensus 33 ~~a~~~~~~al~~~p~--~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH--HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 5777788888777664 66677777666653 3554 677777777665 22 33455666777777
Q ss_pred HhCCCHHHHHHHHHHHhccCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCCHhHH
Q 006630 220 CKNSSVKEAAKLFDEMRERFKPSLR-HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA-QMGKMTDA 297 (638)
Q Consensus 220 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~a 297 (638)
.+.|++++|..+|++..+..|.+.. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 7777777777777776654443443 66666666667777777777777766543 223333333222211 24666666
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006630 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG-CEA--DVVTYTTLISGFCKSRKIDRCYEILDSM 374 (638)
Q Consensus 298 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m 374 (638)
.++|+...+.. +.+...|..++..+.+.|++++|..+|++..... ++| ....|..++..+.+.|+.++|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666665542 2245556666666666666666666666666542 232 3455666666666666666666666666
Q ss_pred HHC
Q 006630 375 IQR 377 (638)
Q Consensus 375 ~~~ 377 (638)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 66
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.49 E-value=7.6e-13 Score=135.64 Aligned_cols=239 Identities=14% Similarity=0.037 Sum_probs=134.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhchhC----CCCC-C
Q 006630 136 HSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLIT--TEVFVILMRRFASARMVKKAIEVLDEMPKY----GCEP-D 208 (638)
Q Consensus 136 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~~-~ 208 (638)
.....+..+...+.+.|++++|...|++.....|..+. ..++..+...+...|++++|+..+++.... +-.| .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 45566677778888889999999999888887654221 346677778888888888888888775432 2111 2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhccCC--CC----HHHHHHHHHHHHhcCC--------------------HHHH
Q 006630 209 EFVFGCLLDALCKNSSVKEAAKLFDEMRERFK--PS----LRHFTSLLYGWCKEGK--------------------LVEA 262 (638)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~----~~~~~~li~~~~~~g~--------------------~~~A 262 (638)
..++..+...|...|++++|...|++.....+ ++ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 35667777778888888888888777643211 11 3366667777777777 6666
Q ss_pred HHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC-CCC----HHhHHHHHHHHHhcCCHHHH
Q 006630 263 KYVLVQMKDA----GFEP-DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC-DPN----ANSYTVLIQALCRMEKMEEA 332 (638)
Q Consensus 263 ~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-~~~----~~~~~~li~~~~~~g~~~~A 332 (638)
.+.+.+..+. +..| ...++..+...|...|++++|.+.+++..+... .++ ..++..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 6666654431 1000 122444555555555555555555555443200 001 12444445555555555555
Q ss_pred HHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006630 333 NRAFVEMERSGC-EAD----VVTYTTLISGFCKSRKIDRCYEILDSM 374 (638)
Q Consensus 333 ~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m 374 (638)
...+++..+... ..+ ..++..+...|...|++++|...+++.
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 555554432100 001 223444444444444444444444443
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.48 E-value=7.4e-13 Score=131.62 Aligned_cols=271 Identities=13% Similarity=0.062 Sum_probs=133.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHH
Q 006630 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEAD----VVTYTTLISGFCKSRKIDRCYEILDSMIQR----GILP-NQLT 385 (638)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~t 385 (638)
.+......+...|++++|...|+++.+.. +.+ ...+..+...|...|++++|++.+++..+. +..| ...+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34445556667777777777777776653 112 245666666677777777777777665432 1111 1233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006630 386 YLHIMLAHEKKEELEECVELMGEMRKIGC-VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464 (638)
Q Consensus 386 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 464 (638)
+..+...+...|++++|...+.+..+... .++.. ....++..+...+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVYH 134 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHHH
Confidence 44444455555555555555555433200 01100 00123344444444
Q ss_pred hcCC--------------------HHHHHHHHHHHHhC----CCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 006630 465 GQGC--------------------LIEACEYFKEMVGR----GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520 (638)
Q Consensus 465 ~~g~--------------------~~~A~~~~~~m~~~----~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 520 (638)
..|+ +++|+..+++.... +. .+....++..+...+...|++++|...++++.+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 213 (338)
T 3ro2_A 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGD-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 213 (338)
T ss_dssp HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4444 44444444443321 00 00112244445555555566666666655554330
Q ss_pred C-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 006630 521 C-ELN----VYAWTIWIHSLFSNGHVKEACSYCLDMMDAD-VMPQ----PDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590 (638)
Q Consensus 521 ~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 590 (638)
. .++ ...+..+...+...|++++|..++++.++.. -.++ ..++..+...+...|++++|...++++++..
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 214 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 0 001 2245555556666666666666665554310 0111 3345555556666666666666666666665
Q ss_pred Hhccc------cc----chhhhhhhhhhHHHHHhhhhh
Q 006630 591 AERQI------TF----KMYKRRGERDLKEKAKKQVDG 618 (638)
Q Consensus 591 p~~~~------~~----~~y~~~g~~~~A~~~~~~~~~ 618 (638)
|+... .+ .+|...|++++|.+.+++..+
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 294 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 54322 11 456666666666666666443
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.48 E-value=9.4e-13 Score=130.86 Aligned_cols=284 Identities=11% Similarity=0.036 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCH
Q 006630 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN----ANSYTVLIQALCRMEKMEEANRAFVEMERS----GCE-ADV 348 (638)
Q Consensus 278 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~ 348 (638)
...+......+...|++++|...++++.+.... + ...+..+...|...|++++|...+++..+. +.. ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 345566677889999999999999999987432 3 367888999999999999999999987643 111 124
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHH
Q 006630 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGI-LPN----QLTYLHIMLAHEKKEE--------------------LEECV 403 (638)
Q Consensus 349 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~g~--------------------~~~a~ 403 (638)
.++..+...|...|++++|+..+++..+... .++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 5788888999999999999999998765311 112 2244444555555555 44444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006630 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483 (638)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 483 (638)
+.++...+ ++.... ..+.....+..+...+...|++++|...+++..+..
T Consensus 164 ~~~~~a~~----------------------------~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 213 (338)
T 3ro2_A 164 DLYEENLS----------------------------LVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 213 (338)
T ss_dssp HHHHHHHH----------------------------HHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----------------------------HHHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 44433221 111100 001112356667777777788888887777766431
Q ss_pred CCC-CC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006630 484 LLS-AP--QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC-ELN----VYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555 (638)
Q Consensus 484 ~~~-~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 555 (638)
... .+ ...++..+...+...|++++|...+++...... .++ ...+..+...+...|++++|...++++++..
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 214 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 100 01 123667777788888999999999888765410 111 4567788889999999999999998876521
Q ss_pred C-CCC----HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 556 V-MPQ----PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 556 ~-~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
. .++ ..++..+...+...|++++|...+++++++.++
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 294 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 0 111 346778888999999999999999999987765
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.48 E-value=6.1e-12 Score=128.07 Aligned_cols=234 Identities=9% Similarity=0.005 Sum_probs=163.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC----CCCHHHHH
Q 006630 354 LISGFCKSRKIDRCYEILDSMIQRG-ILPN----QLTYLHIMLAHEKKEELEECVELMGEMRKI--GC----VPDVSNYN 422 (638)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~m~~~~-~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~----~~~~~~~~ 422 (638)
....+...|++++|+..|++..+.- -.++ ..++..+...+...|++++|...+.+..+. .. +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 4455666777777777777776531 0122 345666677777778887777777776542 11 11235677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCCcHHH
Q 006630 423 VVIRLACKLGELKEAVNVWNEMEAASL-SPG----TDSFVVMVHGFLGQGCLIEACEYFKEMVG-----RGLLSAPQYGT 492 (638)
Q Consensus 423 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~p~~~~ 492 (638)
.+...|...|++++|...|++..+..- .++ ..++..+...|...|++++|+..|++..+ ... +....+
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~ 266 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL--PSLPQA 266 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG--GGHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc--hhHHHH
Confidence 777888888999999988887764310 111 24778888999999999999999998887 321 123567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCC-HHHHH
Q 006630 493 LKALLNSLLRAQKVEMAKDVWSCIVTK----GCELNVYAWTIWIHSLFSNGH---VKEACSYCLDMMDADVMPQ-PDTFA 564 (638)
Q Consensus 493 ~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~t~~ 564 (638)
+..+...+.+.|++++|...+++..+. +.......+..+...+...|+ +++|+.++++. +..|+ ...+.
T Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~ 343 (383)
T 3ulq_A 267 YFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHH
Confidence 788888899999999999999988764 111122335677888888898 77788777664 22333 34577
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 565 KLMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 565 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
.+...|...|++++|...+++++++..+
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 7888899999999999999999987754
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.46 E-value=1.5e-11 Score=110.85 Aligned_cols=167 Identities=14% Similarity=0.100 Sum_probs=125.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHH
Q 006630 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL 216 (638)
Q Consensus 137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li 216 (638)
++.+|..+...|.+.|++++|+..|++..+.+|. +..++..+...+...|++++|+..+....... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN--NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 5567788888888888888888888888877765 66777777788888888888888887776653 44566677777
Q ss_pred HHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhH
Q 006630 217 DALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296 (638)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 296 (638)
..+...++++.|...+.+.....|.+...+..+...|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 777777888888888877776666777777777777777888888887777777654 4456677777777777777777
Q ss_pred HHHHHHHHHHc
Q 006630 297 AFELLKEMRRK 307 (638)
Q Consensus 297 a~~~~~~~~~~ 307 (638)
|.+.|++.++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 77777777664
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.44 E-value=1.5e-11 Score=110.54 Aligned_cols=174 Identities=11% Similarity=0.072 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHH
Q 006630 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498 (638)
Q Consensus 419 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~ 498 (638)
..+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|..+++++.... +.+...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~ 84 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA---PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHH
Confidence 456667778888999999999999888764 5677888899999999999999999999998875 456778888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHH
Q 006630 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQI 578 (638)
Q Consensus 499 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 578 (638)
.+...|++++|.+.++++.+.. +.+...+..+..++...|++++|..+++++++.. ..+...+..+...+...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998763 3467888899999999999999999999988753 3457788899999999999999
Q ss_pred HHHHHHHHHHHHHhcccccc
Q 006630 579 AAEITEKVRKMAAERQITFK 598 (638)
Q Consensus 579 A~~~~~~~~~~~p~~~~~~~ 598 (638)
|...++++++..|+++....
T Consensus 163 A~~~~~~~~~~~~~~~~~~~ 182 (186)
T 3as5_A 163 ALPHFKKANELDEGASVELA 182 (186)
T ss_dssp HHHHHHHHHHHHHCCCGGGG
T ss_pred HHHHHHHHHHcCCCchhhHh
Confidence 99999999999999876543
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=7.2e-13 Score=130.37 Aligned_cols=249 Identities=12% Similarity=0.031 Sum_probs=132.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006630 313 ANSYTVLIQALCRMEKMEEANRAFVEMERS-------GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLT 385 (638)
Q Consensus 313 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 385 (638)
..++..+...|...|++++|..+|+++.+. ........+..+...|...|++++|+..+++.....
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------- 99 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR------- 99 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------
Confidence 445566666666666777676666666542 112223445556666666666666666666554320
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CC-CCCHHHHHH
Q 006630 386 YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA------SL-SPGTDSFVV 458 (638)
Q Consensus 386 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~p~~~~~~~ 458 (638)
........+.....+..+...|...|++++|...|+++.+. +. +.....+..
T Consensus 100 ---------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 100 ---------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp ---------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ---------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 00000001112334444555555555555555555554432 11 112345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC------CCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCC-
Q 006630 459 MVHGFLGQGCLIEACEYFKEMVGR------GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK-------GCELN- 524 (638)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~m~~~------~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-------~~~p~- 524 (638)
+...+...|++++|+++|+++... +. .+....++..+...+...|++++|.+.++++.+. ...+.
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPD-DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTT-CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 666777777777777777766653 10 0122345666677777777777777777777653 01111
Q ss_pred ------HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 525 ------VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 525 ------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
...+..+...+...+.+.+|...+...... .| +..++..+..+|...|++++|.+++++++++.|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 112223334445556666777777666543 33 3556888999999999999999999999999875
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.40 E-value=2.4e-11 Score=123.72 Aligned_cols=162 Identities=9% Similarity=0.010 Sum_probs=84.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC--CC----CCHHhHH
Q 006630 249 LLYGWCKEGKLVEAKYVLVQMKDA----GFEP-DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG--CD----PNANSYT 317 (638)
Q Consensus 249 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g--~~----~~~~~~~ 317 (638)
....+...|++++|...|++..+. +-.+ ...++..+...|...|+++.|.+.+++..+.- .. ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445556667777777777776643 1011 22456666666666677777666666655421 00 0123555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 006630 318 VLIQALCRMEKMEEANRAFVEMERSGC-EAD----VVTYTTLISGFCKSRKIDRCYEILDSMIQR----GI-LPNQLTYL 387 (638)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~t~~ 387 (638)
.+...|...|++++|...|++..+... .++ ..++..+...|...|++++|+..|++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 566666666666666666666543200 011 124555555666666666666666555441 11 11233444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 006630 388 HIMLAHEKKEELEECVELMGEMR 410 (638)
Q Consensus 388 ~ll~~~~~~g~~~~a~~~~~~~~ 410 (638)
.+...+...|++++|...+++..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44555555555555555554443
No 74
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.40 E-value=3.1e-11 Score=112.92 Aligned_cols=206 Identities=10% Similarity=-0.029 Sum_probs=155.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006630 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460 (638)
Q Consensus 381 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 460 (638)
.|+..+......+...|++++|...|+...+...+++...+..+..+|.+.|++++|+..|++..+.+ +.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 35677888888888999999999999998887633777777778888999999999999999988875 44567888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHH
Q 006630 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQY-------GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN---VYAWTI 530 (638)
Q Consensus 461 ~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~-------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~ 530 (638)
..|...|++++|+..|++.++.. +.+. ..+..+...+...|++++|++.|+++++. .|+ ...|..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV---PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHH
Confidence 99999999999999999988875 2334 45777777888889999999999998875 454 456777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccccchh
Q 006630 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMY 600 (638)
Q Consensus 531 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~y 600 (638)
+..+|...|+ .+++++...+ ..+...+.... ....+.+++|...++++++++|+++.+..++
T Consensus 159 l~~~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 220 (228)
T 4i17_A 159 LGVLFYNNGA-----DVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQ 220 (228)
T ss_dssp HHHHHHHHHH-----HHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 7777765543 3445554432 23344444433 3345778999999999999999988765444
No 75
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.40 E-value=1.5e-11 Score=128.56 Aligned_cols=209 Identities=13% Similarity=0.043 Sum_probs=110.7
Q ss_pred HHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006630 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV-KEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQ 268 (638)
Q Consensus 190 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 268 (638)
++++++.++...... +.+...+..+...|...|++ ++|+..|++..+..|.+...|..+...|.+.|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444433321 23455555555555556666 6666666655554455556666666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHc---------CCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc--------CCHHH
Q 006630 269 MKDAGFEPDIVVYNNLLSGYAQM---------GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM--------EKMEE 331 (638)
Q Consensus 269 m~~~g~~p~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--------g~~~~ 331 (638)
..+. .|+...+..+...+... |++++|.+.+++..+... .+...|..+...|... |++++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 6554 34455555555555555 555556555555555422 2445555555555555 55555
Q ss_pred HHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006630 332 ANRAFVEMERSGCE---ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404 (638)
Q Consensus 332 A~~~~~~m~~~g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 404 (638)
|...|++..+.. + .+...|..+...|...|++++|++.|++..+.... +...+..+...+...|++++|.+
T Consensus 240 A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 240 ALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555542 1 24555555555555555555555555555543222 33344444444444444444443
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.38 E-value=4.8e-10 Score=113.48 Aligned_cols=261 Identities=10% Similarity=-0.019 Sum_probs=144.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHH
Q 006630 352 TTLISGFCKSRKIDRCYEILDSMIQRGI-LPNQ----LTYLHIMLAHEKKEELEECVELMGEMRKI----GCV--P-DVS 419 (638)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~ 419 (638)
+.+...+...|++++|...+++...... ..+. .++..+...+...|++++|...++...+. +.. | ...
T Consensus 57 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 136 (373)
T 1hz4_A 57 SVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEF 136 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHH
Confidence 3334444445555555555544433100 0011 12333444555556666666555554331 111 1 123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHH-
Q 006630 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLS---P-GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK- 494 (638)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~- 494 (638)
.+..+...|...|++++|...+++..+..-. + ....+..+...+...|++++|...+++................
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 4445566667777777777777766543211 1 1245666777777778888888887777643110011111111
Q ss_pred ---HHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCCH-HHH
Q 006630 495 ---ALLNSLLRAQKVEMAKDVWSCIVTKGCEL---NVYAWTIWIHSLFSNGHVKEACSYCLDMMDA----DVMPQP-DTF 563 (638)
Q Consensus 495 ---~ll~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~t~ 563 (638)
..+..+...|++++|...+++.......+ ....+..+...+...|++++|...+++.... +..++. ..+
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 296 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 296 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 22334667888888888887776542111 1234566777888888888888888877542 211222 256
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccccchhhhhhhhhhHHHHHhh
Q 006630 564 AKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKAKKQ 615 (638)
Q Consensus 564 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~y~~~g~~~~A~~~~~~ 615 (638)
..+..++...|+.++|...+++++++.+... ....+...| +....++++
T Consensus 297 ~~la~~~~~~g~~~~A~~~l~~al~~~~~~g-~~~~~~~~g--~~~~~ll~~ 345 (373)
T 1hz4_A 297 LLLNQLYWQAGRKSDAQRVLLDALKLANRTG-FISHFVIEG--EAMAQQLRQ 345 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC-CCHHHHTTH--HHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhcccc-HHHHHHHcc--HHHHHHHHH
Confidence 6667778888999999999999998877633 223444444 334444444
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.36 E-value=2e-10 Score=116.64 Aligned_cols=233 Identities=9% Similarity=-0.057 Sum_probs=159.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CC-CCHHHHH
Q 006630 354 LISGFCKSRKIDRCYEILDSMIQRG-ILPN----QLTYLHIMLAHEKKEELEECVELMGEMRKI----G-CV-PDVSNYN 422 (638)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~m~~~~-~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~-~~-~~~~~~~ 422 (638)
....+...|++++|+..|++..+.. -.++ ..++..+...+...|+++.|...+.+..+. + .. ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 3444567788888888887776531 1122 345666777777788888888777776542 1 01 1244667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCCcHHH
Q 006630 423 VVIRLACKLGELKEAVNVWNEMEAA----SLSP-GTDSFVVMVHGFLGQGCLIEACEYFKEMVG-----RGLLSAPQYGT 492 (638)
Q Consensus 423 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~p~~~~ 492 (638)
.+...|...|++++|...|++..+. +..+ ...++..+...|...|++++|+..|++... .. +....+
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~ 263 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP---DLLPKV 263 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG---GGHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC---hhHHHH
Confidence 7777888888888888888876542 1111 124677788888889999999999988877 43 233567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCC-HHHHH
Q 006630 493 LKALLNSLLRAQKVEMAKDVWSCIVTKG----CELNVYAWTIWIHSLFSNGH---VKEACSYCLDMMDADVMPQ-PDTFA 564 (638)
Q Consensus 493 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~t~~ 564 (638)
+..+...+.+.|++++|...+++..+.. .+.....+..+...+...|+ +++|+.++++. +..|+ ...+.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~ 340 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHH
Confidence 7788888889999999999999887751 11123445666667777788 77777777652 22333 33566
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 565 KLMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 565 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
.+...|...|++++|...++++++...+
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~~~~~ 368 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLKAQED 368 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 7888888889999999999988877643
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.36 E-value=3.3e-12 Score=125.54 Aligned_cols=132 Identities=17% Similarity=0.074 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhc--------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC
Q 006630 209 EFVFGCLLDALCKNSSVKEAAKLFDEMRE--------RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA------GF 274 (638)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 274 (638)
..++..+...|...|++++|..+|+++.+ ..+....++..+...|...|++++|...+++..+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 45566666666677777777777766544 12233455566666666666666666666665542 11
Q ss_pred -CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc------CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 275 -EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK------GCDP-NANSYTVLIQALCRMEKMEEANRAFVEME 340 (638)
Q Consensus 275 -~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 340 (638)
+....++..+...|...|++++|.+.++++.+. +..| ...++..+...|...|++++|..+|+++.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 112334445555555555555555555554432 1111 22334444444555555555555554444
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.36 E-value=1.3e-11 Score=134.25 Aligned_cols=175 Identities=17% Similarity=0.160 Sum_probs=154.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHH
Q 006630 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494 (638)
Q Consensus 415 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~ 494 (638)
+-+...++.|...|.+.|++++|++.|++..+.. +-+...|+.+...|.+.|++++|+..|++.++.. +.+..++.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~---P~~~~a~~ 81 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS---PTFADAYS 81 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHH
Confidence 4456789999999999999999999999999876 5668899999999999999999999999999876 45678899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhh
Q 006630 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKL 573 (638)
Q Consensus 495 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~ 573 (638)
.+..++...|++++|++.|+++++.... +...|+.+..+|...|++++|++.|++.++. .|+ ...|..+..++...
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhc
Confidence 9999999999999999999999987422 6788999999999999999999999999875 554 67799999999999
Q ss_pred cCHHHHHHHHHHHHHHHHhcccc
Q 006630 574 YNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 574 g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
|++++|.+.+++++++.|+....
T Consensus 159 g~~~~A~~~~~kal~l~~~~~~~ 181 (723)
T 4gyw_A 159 CDWTDYDERMKKLVSIVADQLEK 181 (723)
T ss_dssp TCCTTHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHhChhHHhh
Confidence 99999999999999999986543
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.35 E-value=3.9e-11 Score=130.59 Aligned_cols=165 Identities=11% Similarity=0.031 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006630 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462 (638)
Q Consensus 383 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 462 (638)
..+++.+...+.+.|++++|++.|++..+.. +-+...+..+..+|.+.|++++|+..|++..+.+ +-+...|..+...
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4577788888888888888888888887764 4567778888888888888888888888887765 4556788888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 006630 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542 (638)
Q Consensus 463 ~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 542 (638)
|...|++++|++.|++.++.. +.+..++..+..++...|++++|++.|+++++.... +...|..+..+|...|+++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~---P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN---PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 888888888888888888765 355677888888888888888888888888776322 4667788888888888888
Q ss_pred HHHHHHHHHHh
Q 006630 543 EACSYCLDMMD 553 (638)
Q Consensus 543 ~A~~~~~~m~~ 553 (638)
+|.+.++++++
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888777654
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.30 E-value=4.7e-10 Score=100.50 Aligned_cols=161 Identities=17% Similarity=0.099 Sum_probs=73.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc
Q 006630 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKE 256 (638)
Q Consensus 177 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 256 (638)
+..+...+...|++++|+..++.+.+.. +.+..++..+...+...|++++|...|+++.+..+.+...|..+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 3334444444555555555555444332 233444444555555555555555555554444344444444555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 006630 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336 (638)
Q Consensus 257 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 336 (638)
|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+.+.|++++|...+
T Consensus 90 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555444432 2233444444444444444444444444444332 113334444444444444444444444
Q ss_pred HHHH
Q 006630 337 VEME 340 (638)
Q Consensus 337 ~~m~ 340 (638)
++..
T Consensus 168 ~~~~ 171 (186)
T 3as5_A 168 KKAN 171 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 82
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.30 E-value=2.6e-10 Score=108.93 Aligned_cols=266 Identities=8% Similarity=-0.029 Sum_probs=180.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006630 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401 (638)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 401 (638)
-..-.|.+..++.-...+.. ......-.-+.++|...|+++.. ....|....+..+...+ ..+
T Consensus 22 n~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~---- 84 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK---- 84 (310)
T ss_dssp HHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----
T ss_pred HHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----
Confidence 34455777777663332221 11222333345667777776532 12334443444433333 222
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASL-SPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480 (638)
Q Consensus 402 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 480 (638)
+...+++..+.+ .++...+..+..++...|++++|++++.+....+- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667777766654 45566666788889999999999999999876652 1356788888999999999999999999998
Q ss_pred hCCCCCCC-----cHHHHHHHHHHH--HHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006630 481 GRGLLSAP-----QYGTLKALLNSL--LRAQ--KVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551 (638)
Q Consensus 481 ~~~~~~~p-----~~~~~~~ll~~~--~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 551 (638)
+.. | +..+...+..++ ...| ++.+|..+|+++.+. .|+..+-..+..++.+.|++++|.+.++.+
T Consensus 164 ~~~----~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 164 NAI----EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHS----CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hcC----ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 764 6 356666677663 3334 899999999998765 455333344444889999999999999876
Q ss_pred HhC-----CC---CC-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccccchhhhhhhhhhHHHHH
Q 006630 552 MDA-----DV---MP-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKAK 613 (638)
Q Consensus 552 ~~~-----~~---~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~y~~~g~~~~A~~~~ 613 (638)
.+. .. .| |+.++..++......|+ .|.++++++.+..|++|.+.+.-.+...++++..-|
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~k~~~Fd~~~~ky 306 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQEIDAKFDELVRKY 306 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHh
Confidence 542 11 24 45667677766667787 889999999999999999988777777777766543
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.29 E-value=1.5e-09 Score=109.78 Aligned_cols=269 Identities=11% Similarity=0.018 Sum_probs=192.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHH
Q 006630 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQL----TYLHIMLAHEKKEELEECVELMGEMRKIGC-VPD----VSNYNV 423 (638)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~ 423 (638)
.....+...|++++|...+++........+.. ++..+...+...|++++|...+++..+... ..+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445667899999999999887754333332 455666778889999999999998765310 112 233566
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC----CCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC--cHHHHH
Q 006630 424 VIRLACKLGELKEAVNVWNEMEAA----SLS--PG-TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP--QYGTLK 494 (638)
Q Consensus 424 li~~~~~~g~~~~A~~~~~~m~~~----~~~--p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p--~~~~~~ 494 (638)
+...+...|++++|...+++..+. +.. |. ...+..+...+...|++++|..++++.........+ ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 777899999999999999987642 212 22 346677888999999999999999998875321111 234677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHH-----HHHHHHHccCCHHHHHHHHHHHHhCCCCCC---HHHHHH
Q 006630 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCEL-NVYAWT-----IWIHSLFSNGHVKEACSYCLDMMDADVMPQ---PDTFAK 565 (638)
Q Consensus 495 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~t~~~ 565 (638)
.+...+...|++++|...+++.......+ ....|. ..+..+...|++++|..++++.......+. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 78888999999999999999987651121 112222 233457799999999999998765322111 234677
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhccc------cc----chhhhhhhhhhHHHHHhhhhhhhh
Q 006630 566 LMRGLKKLYNRQIAAEITEKVRKMAAERQI------TF----KMYKRRGERDLKEKAKKQVDGRKR 621 (638)
Q Consensus 566 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~----~~y~~~g~~~~A~~~~~~~~~~~~ 621 (638)
+...+...|++++|...++++++..+.... .+ .+|...|++++|.+.+++......
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 788899999999999999999998766331 11 578899999999999998655443
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.29 E-value=7.5e-10 Score=112.28 Aligned_cols=231 Identities=7% Similarity=-0.057 Sum_probs=149.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C---CC-CHHHHH
Q 006630 319 LIQALCRMEKMEEANRAFVEMERSGC-EAD----VVTYTTLISGFCKSRKIDRCYEILDSMIQRG--I---LP-NQLTYL 387 (638)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~---~p-~~~t~~ 387 (638)
....+...|++++|...|++..+... .++ ..++..+...|...|++++|+..+++..+.. . .+ ...++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34445666777777777777654210 112 3456666667777777777777777665421 1 11 134566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 006630 388 HIMLAHEKKEELEECVELMGEMRKI----GCV-PDVSNYNVVIRLACKLGELKEAVNVWNEMEA-----ASLSPGTDSFV 457 (638)
Q Consensus 388 ~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~ 457 (638)
.+...+...|++++|.+.+.+..+. +.+ ....++..+...|...|++++|...|++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 6677777777777777777766542 111 1234567777888888888888888888776 43 33356788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCCc-HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 006630 458 VMVHGFLGQGCLIEACEYFKEMVGRGLL-SAPQ-YGTLKALLNSLLRAQK---VEMAKDVWSCIVTKGCELN-VYAWTIW 531 (638)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~p~-~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l 531 (638)
.+...|...|++++|..++++....... ..|. ...+..+...+...++ +++|..++++. +..|+ ...+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHH
Confidence 8888899999999999999888774211 0222 3344444455556677 77777777653 22222 3456678
Q ss_pred HHHHHccCCHHHHHHHHHHHHh
Q 006630 532 IHSLFSNGHVKEACSYCLDMMD 553 (638)
Q Consensus 532 i~~~~~~g~~~~A~~~~~~m~~ 553 (638)
...|...|++++|...|++.++
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8889999999999999888764
No 85
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.25 E-value=6e-10 Score=106.55 Aligned_cols=67 Identities=15% Similarity=0.101 Sum_probs=56.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhh----------cCHHHHHHHHHHHHHHHHhcc
Q 006630 529 TIWIHSLFSNGHVKEACSYCLDMMDADVMPQ----PDTFAKLMRGLKKL----------YNRQIAAEITEKVRKMAAERQ 594 (638)
Q Consensus 529 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~----------g~~~~A~~~~~~~~~~~p~~~ 594 (638)
..+...|...|++++|+..|+++++. .|+ ...+..+..++... |++++|...++++++..|+++
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 56688899999999999999999874 343 45677888888866 899999999999999999987
Q ss_pred ccc
Q 006630 595 ITF 597 (638)
Q Consensus 595 ~~~ 597 (638)
...
T Consensus 230 ~~~ 232 (261)
T 3qky_A 230 LLR 232 (261)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 86
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.22 E-value=2.3e-09 Score=100.02 Aligned_cols=194 Identities=11% Similarity=0.023 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006630 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427 (638)
Q Consensus 348 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 427 (638)
+..|..+...+...|++++|+..|++..+....++...+..+..++...|++++|.+.++...+.. +.+...+..+...
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHH
Confidence 344444444455555555555555555444332344444445555555555555555555555432 2234445555555
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC--cHHHHHHHHH
Q 006630 428 ACKLGELKEAVNVWNEMEAASLSPGT-------DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP--QYGTLKALLN 498 (638)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p--~~~~~~~ll~ 498 (638)
|...|++++|+..|++..+.. +.+. ..|..+...+...|++++|++.|+++++.. +. +...+..+..
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT---SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS---CHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC---CCcccHHHHHHHHH
Confidence 555555555555555555443 2233 345555566666666666666666666553 12 2344445554
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006630 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554 (638)
Q Consensus 499 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 554 (638)
.+... +..+++++...+ ..+...|.... ....+.+++|+..+++.++.
T Consensus 162 ~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 44433 233344444432 11233333222 22345567777777777654
No 87
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.20 E-value=1.9e-07 Score=97.49 Aligned_cols=403 Identities=7% Similarity=-0.041 Sum_probs=215.1
Q ss_pred hhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCC-HHHHHHHH
Q 006630 154 FGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS-VKEAAKLF 232 (638)
Q Consensus 154 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~ 232 (638)
++.|..+|+.+....|. ++++.+.++|++.+.. .|++..|...+....+.++ .+....+|
T Consensus 11 i~~aR~vyer~l~~~P~-----------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMS-----------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp -CCHHHHHHHHHHHHHT-----------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHH
T ss_pred hHHHHHHHHHHHHHCCC-----------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 55666666666554322 6677777777777654 4677777776666665553 34455666
Q ss_pred HHHhcc---CCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 006630 233 DEMRER---FKPSLRHFTSLLYGWC----KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305 (638)
Q Consensus 233 ~~~~~~---~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 305 (638)
+..... .+.+...|...+..+. .+|+.+.+..+|++.+......-...|...... ....+...+.+++.+..
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~ 150 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDTL 150 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHHh
Confidence 665442 3446667777666543 245666777777777753111001112111111 11111111222211110
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--C-----HHHHHHHHHHHHHCC
Q 006630 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR--K-----IDRCYEILDSMIQRG 378 (638)
Q Consensus 306 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~~ 378 (638)
..+..|..+++.+...--..+...|...+.--...+ - .+.+..+|+++....
T Consensus 151 ---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~ 209 (493)
T 2uy1_A 151 ---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF 209 (493)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC
Confidence 112223333332221100012334444333221110 0 233455666665542
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---------CC
Q 006630 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA---------SL 449 (638)
Q Consensus 379 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~ 449 (638)
. .+...|...+.-+...|+.+.|..++++.... +.+...+. .|....+.++. ++.+.+. +.
T Consensus 210 p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~ 279 (493)
T 2uy1_A 210 Y-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEK 279 (493)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC---------
T ss_pred C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhh
Confidence 2 24555555555556666666666666666655 33322222 12222111111 1211110 00
Q ss_pred CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCH
Q 006630 450 SP---GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR-AQKVEMAKDVWSCIVTKGCELNV 525 (638)
Q Consensus 450 ~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~p~~ 525 (638)
.+ ....|...+..+.+.+..+.|..+|+++ ... ..+...|......-.+ .++.+.|+.+|+..++.. +-+.
T Consensus 280 ~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~---~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~ 354 (493)
T 2uy1_A 280 VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE---GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDST 354 (493)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS---CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCH
T ss_pred hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC---CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCH
Confidence 01 1245777777777788899999999999 322 2345555433322223 346999999999998862 2245
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH----hccccc----
Q 006630 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAA----ERQITF---- 597 (638)
Q Consensus 526 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~---- 597 (638)
..|...++.....|+.+.|..+|+++. .....|...+..-...|+.+.++.++++..+.-. +++..+
T Consensus 355 ~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~ 429 (493)
T 2uy1_A 355 LLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKADAILPPLPPREHN 429 (493)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCBCCCCCC--C
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhcccccCCcccccccH
Confidence 567778888888999999999999862 2466788888877888999999999999987544 344332
Q ss_pred -chhhhhhhhhhHHHHHhhhh
Q 006630 598 -KMYKRRGERDLKEKAKKQVD 617 (638)
Q Consensus 598 -~~y~~~g~~~~A~~~~~~~~ 617 (638)
+.=...|.++....-|+-+.
T Consensus 430 ~~fe~~~g~l~~~~~~~~~~~ 450 (493)
T 2uy1_A 430 VQMEGILGRYHCFLDSFNFLD 450 (493)
T ss_dssp CCCCHHHHHHHHHHHHHCBTT
T ss_pred HHHHHHhhhHHHHHHHhhhhc
Confidence 22233477777777666543
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.15 E-value=3.5e-09 Score=101.17 Aligned_cols=243 Identities=9% Similarity=-0.007 Sum_probs=169.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006630 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434 (638)
Q Consensus 355 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 434 (638)
|.-..-.|.+..++.-. .+-...........+.+++...|+++.. ..-.|....+..+... ...+
T Consensus 20 ikn~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT--
T ss_pred HHHHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc--
Confidence 34455679999988733 2222222333444456777777776531 1223444444444443 3322
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006630 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514 (638)
Q Consensus 435 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 514 (638)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..+.. .-+...+..++..+.+.|+.+.|.+.++
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~-~~~lea~~l~vqi~L~~~r~d~A~k~l~ 160 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEA-EGTTELLLLAIEVALLNNNVSTASTIFD 160 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS-TTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-cCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 788888887765 566777778899999999999999999999887620 1356677788899999999999999999
Q ss_pred HHHHcCCCC-----CHHHHHHHHHH--HHccC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 006630 515 CIVTKGCEL-----NVYAWTIWIHS--LFSNG--HVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEK 585 (638)
Q Consensus 515 ~~~~~~~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~ 585 (638)
.|.+. .| +..+...+..+ ....| ++++|..+|+++.+. .|+..+-..++.++...|++++|++.++.
T Consensus 161 ~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 161 NYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99875 55 24555555555 44444 999999999999765 57644444555588899999999999999
Q ss_pred HHHHH----------Hhccccc-c---hhhhhhhhhhHHHHHhhhhhhhhh
Q 006630 586 VRKMA----------AERQITF-K---MYKRRGERDLKEKAKKQVDGRKRR 622 (638)
Q Consensus 586 ~~~~~----------p~~~~~~-~---~y~~~g~~~~A~~~~~~~~~~~~~ 622 (638)
+.+.. |+++.++ + ++...|+ +|.++++++....+.
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 88884 6677775 3 5566676 888888887665543
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.15 E-value=4.1e-10 Score=109.71 Aligned_cols=175 Identities=7% Similarity=-0.061 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCC-CC--cH
Q 006630 420 NYNVVIRLACKLGELKEAVNVWNEMEAA----SLSP-GTDSFVVMVHGFLGQ-GCLIEACEYFKEMVGRGLLS-AP--QY 490 (638)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~-~p--~~ 490 (638)
+|+.+..+|.+.|++++|+..|++..+. |-.. -..+|+.+...|... |++++|+..|++.++..... .+ ..
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 3444444444455555555444444321 1000 023566666677775 77777777777766532100 01 02
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH---
Q 006630 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV------YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPD--- 561 (638)
Q Consensus 491 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--- 561 (638)
.++..+...+...|++++|...|+++.+....... ..|..+..++...|++++|+..|++.++. .|+..
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~ 236 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcH
Confidence 35666677777777777777777777765322111 14566666777777777777777776642 34321
Q ss_pred ---HHHHHHHHHH--hhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 562 ---TFAKLMRGLK--KLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 562 ---t~~~ll~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
.+..++.++. ..++++.|...++++.+++|.+..+
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 276 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI 276 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHH
Confidence 2334445553 3456777777777777776665433
No 90
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.14 E-value=3.7e-10 Score=108.96 Aligned_cols=230 Identities=13% Similarity=0.078 Sum_probs=145.9
Q ss_pred HhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHH
Q 006630 359 CKSRKIDRCYEILDSMIQR-------GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI------G-CVPDVSNYNVV 424 (638)
Q Consensus 359 ~~~g~~~~A~~~~~~m~~~-------~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l 424 (638)
...|++++|+.+|++..+. ..+....++..+...+...|++++|...++++.+. + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4467777777777766552 11223556777888888899999999988887653 1 12335667778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCCcHHH
Q 006630 425 IRLACKLGELKEAVNVWNEMEAA------S-LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR-----GLLSAPQYGT 492 (638)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~~------~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~p~~~~ 492 (638)
...|...|++++|...|++..+. . .+.....+..+...|...|++++|+.+|+++... +...+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88888889999999888887654 1 1223467778888888888899998888888765 1100223456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHH---h-CC-CCC-
Q 006630 493 LKALLNSLLRAQKVEMAKDVWSCIVTK-------GCEL-NVYAWTIWIHSLFSNGHVKEACSYCLDMM---D-AD-VMP- 558 (638)
Q Consensus 493 ~~~ll~~~~~~g~~~~A~~~~~~~~~~-------~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~-~~-~~p- 558 (638)
+..+...+...|++++|..+++++.+. ...+ ....|..+...+...+....+..+ ..+. + .+ ..|
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY-GEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHH-HHHHHHHHhcCCCCHH
Confidence 777888888888888888888888754 1112 222344444444433333333222 1111 1 11 112
Q ss_pred CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 006630 559 QPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589 (638)
Q Consensus 559 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 589 (638)
...++..+...+...|++++|..+++++++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2345777788888888888888888887753
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.12 E-value=6.8e-10 Score=107.05 Aligned_cols=229 Identities=10% Similarity=0.002 Sum_probs=157.8
Q ss_pred HhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHH
Q 006630 324 CRMEKMEEANRAFVEMERS-------GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR------GILP-NQLTYLHI 389 (638)
Q Consensus 324 ~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~t~~~l 389 (638)
...|++++|..+|++..+. ..+....++..+...|...|++++|+..+++..+. +..| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456777777777665542 21224567888999999999999999999998864 2222 35678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------C-CCCCHHH
Q 006630 390 MLAHEKKEELEECVELMGEMRKI------G-CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA------S-LSPGTDS 455 (638)
Q Consensus 390 l~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~-~~p~~~~ 455 (638)
...+...|++++|.+.+.+..+. . .+.....+..+...|...|++++|...|+++.+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 1 1334677888889999999999999999998764 1 1223467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCCcHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHcCCCC
Q 006630 456 FVVMVHGFLGQGCLIEACEYFKEMVGRG------LLSAPQYGTLKALLNSLLRAQKVEMAK------DVWSCIVTKGCEL 523 (638)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~p~~~~~~~ll~~~~~~g~~~~A~------~~~~~~~~~~~~p 523 (638)
+..+...|...|++++|+.+|+++.... .........+..+.......+....+. ..++.... ....
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 8899999999999999999999998641 000112223333333333333322222 22221111 1112
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006630 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553 (638)
Q Consensus 524 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 553 (638)
....+..+..+|...|++++|..++++.++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345688899999999999999999998875
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.12 E-value=3.5e-09 Score=89.04 Aligned_cols=133 Identities=16% Similarity=0.198 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006630 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534 (638)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 534 (638)
.|..+...+...|++++|+.+|+++.... +.+...+..+...+...|++++|..+++++...+ +.+...|..+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD---PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC---CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHH
Confidence 45566666666677777777777666654 2445556666666667777777777777766653 2245566667777
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 535 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
+...|++++|..+++++.+.. ..+...+..+...+...|++++|...++++++.+|+
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 777777777777777776542 234556667777777777777777777777777664
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.11 E-value=9.2e-10 Score=107.17 Aligned_cols=208 Identities=11% Similarity=-0.024 Sum_probs=152.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 006630 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA----SLSPG-TDSFVVMVHGFLGQGCLIEA 472 (638)
Q Consensus 398 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A 472 (638)
++++|...+... ...|...|++++|...|++..+. +-+++ ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 488888887776 34577899999999999987653 31222 46889999999999999999
Q ss_pred HHHHHHHHhCCCCC-CCc--HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCCHHH
Q 006630 473 CEYFKEMVGRGLLS-APQ--YGTLKALLNSLLRA-QKVEMAKDVWSCIVTKGCE-LN----VYAWTIWIHSLFSNGHVKE 543 (638)
Q Consensus 473 ~~~~~~m~~~~~~~-~p~--~~~~~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~ 543 (638)
+..|++.+...... .+. ..++..+...|... |++++|+..|++.++.... .+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 99999887642100 111 35788888899996 9999999999999875111 01 3568889999999999999
Q ss_pred HHHHHHHHHhCCCCCCH------HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc---------chh--hhhhhh
Q 006630 544 ACSYCLDMMDADVMPQP------DTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF---------KMY--KRRGER 606 (638)
Q Consensus 544 A~~~~~~m~~~~~~p~~------~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~---------~~y--~~~g~~ 606 (638)
|+..|++.++....... ..|..+..++...|+++.|...++++++++|+.+... ..| ...+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999875322221 1567788889999999999999999999999876541 223 256789
Q ss_pred hhHHHHHhhhhhhh
Q 006630 607 DLKEKAKKQVDGRK 620 (638)
Q Consensus 607 ~~A~~~~~~~~~~~ 620 (638)
++|.+.|+++....
T Consensus 257 ~~A~~~~~~~~~l~ 270 (292)
T 1qqe_A 257 SEHCKEFDNFMRLD 270 (292)
T ss_dssp HHHHHHHTTSSCCC
T ss_pred HHHHHHhccCCccH
Confidence 99999998764433
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.10 E-value=1.3e-09 Score=100.09 Aligned_cols=127 Identities=11% Similarity=-0.004 Sum_probs=93.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 006630 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538 (638)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 538 (638)
+...|...|++++|+..|++.++.. +.+...+..+...+...|++++|...|+++++... .+...|..+..+|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA---PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 7888888899999999998888876 35677888888888889999999999998888632 2577788888887666
Q ss_pred CC--HHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc
Q 006630 539 GH--VKEACSYCLDMMDADVMPQP--DTFAKLMRGLKKLYNRQIAAEITEKVRKMAAER 593 (638)
Q Consensus 539 g~--~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 593 (638)
|. .+.+...++... .|++ ..+.....++...|++++|+..++++++++|+.
T Consensus 136 ~~~~~~~~~~~~~~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred hHHHHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 54 344555555543 3443 344455666677789999999999999998864
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.07 E-value=7.2e-09 Score=87.06 Aligned_cols=130 Identities=15% Similarity=0.129 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHH
Q 006630 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219 (638)
Q Consensus 140 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 219 (638)
+|..+...+...|++++|..+|+++....|. +...+..+...+...|++++|...++++.+.+ +.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR--SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc--chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 4666777777788888888888877776543 56667777777777777777777777776654 34566677777777
Q ss_pred HhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 220 CKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272 (638)
Q Consensus 220 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (638)
...|++++|...|+++....+.+...+..+...+.+.|++++|...|+++.+.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 77777777777777776655666777777777777777777777777776654
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.05 E-value=2.2e-10 Score=99.18 Aligned_cols=134 Identities=11% Similarity=-0.042 Sum_probs=104.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 006630 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538 (638)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 538 (638)
|...+...|++++|+..+....... +.+...+..+...|.+.|++++|++.|+++++... -+...|..+..+|...
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~---p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP---RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH---HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 3445556778888888888876553 22344566778889999999999999999988742 2678899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhcCHHHHHH-HHHHHHHHHHhcccccc
Q 006630 539 GHVKEACSYCLDMMDADVMP-QPDTFAKLMRGLKKLYNRQIAAE-ITEKVRKMAAERQITFK 598 (638)
Q Consensus 539 g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~A~~-~~~~~~~~~p~~~~~~~ 598 (638)
|++++|+..|++.++. .| +...|..+...+.+.|++++|.+ +++++++++|+++.++.
T Consensus 79 ~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~ 138 (150)
T 4ga2_A 79 ENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYK 138 (150)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHH
T ss_pred CchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHH
Confidence 9999999999998875 45 46778889999999999876555 56999999999988763
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.03 E-value=1.2e-09 Score=119.63 Aligned_cols=173 Identities=10% Similarity=-0.050 Sum_probs=118.9
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006630 394 EKKEELEECVELMGEMR--------KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465 (638)
Q Consensus 394 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 465 (638)
...|++++|.+.+++.. +.. +.+...+..+...|.+.|++++|+..|+++.+.+ +.+...|..+...|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 56777888888877776 332 4456667777777777888888888887777664 4566777777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 006630 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545 (638)
Q Consensus 466 ~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 545 (638)
.|++++|+..|+++++.. +.+...+..+..++.+.|++++ ++.|+++++... .+...|..+..+|.+.|++++|+
T Consensus 480 ~g~~~~A~~~~~~al~l~---P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF---PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS---TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888777765 2445566777777777788877 777777776532 25667777777788888888888
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHHHHhhcC
Q 006630 546 SYCLDMMDADVMPQ-PDTFAKLMRGLKKLYN 575 (638)
Q Consensus 546 ~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~ 575 (638)
..|+++++. .|+ ...+..+..++...++
T Consensus 555 ~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 877776643 565 3446666666555444
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.02 E-value=1.4e-08 Score=96.88 Aligned_cols=190 Identities=9% Similarity=-0.044 Sum_probs=125.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhchhCCC-CC-CHHH
Q 006630 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLIT-TEVFVILMRRFASARMVKKAIEVLDEMPKYGC-EP-DEFV 211 (638)
Q Consensus 135 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~~-~~~~ 211 (638)
+.+...+-.+...+.+.|++++|+..|+++....|..+. ...+..+..++...|++++|+..|++..+... .| ...+
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 456677777888888999999999999999888765322 66788888889999999999999999887521 12 2456
Q ss_pred HHHHHHHHHh--------CCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006630 212 FGCLLDALCK--------NSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNN 283 (638)
Q Consensus 212 ~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 283 (638)
+..+..++.. .|++++|+..|+++....|.+...+..+.......++. ...+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~------------------~~~~~~ 153 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKL------------------ARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH------------------HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHH------------------HHHHHH
Confidence 7778888888 89999999999998877666655553331111100000 011344
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCCCC--CHHhHHHHHHHHHhc----------CCHHHHHHHHHHHHHc
Q 006630 284 LLSGYAQMGKMTDAFELLKEMRRKGCDP--NANSYTVLIQALCRM----------EKMEEANRAFVEMERS 342 (638)
Q Consensus 284 ll~~~~~~g~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~ 342 (638)
+...|.+.|++++|...|+.+++..... ....+..+..+|.+. |++++|...|+++.+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 5566666666666666666666542211 123455555556544 6667777777766655
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.01 E-value=1.5e-08 Score=93.00 Aligned_cols=192 Identities=10% Similarity=-0.019 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 006630 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDA 218 (638)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 218 (638)
..+-.....+.+.|++++|+..|++....+|. +...+... . +. ..........+.+..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~-----~-------------~~-~~~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNID--RTEMYYWT-----N-------------VD-KNSEISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH--HHHHHHHH-----H-------------SC-TTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--ChHHHHHh-----h-------------hc-chhhhhHHHHHHHHHH
Confidence 34444556677888888888888888877654 33333320 0 00 0001112233446667
Q ss_pred HHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HhH
Q 006630 219 LCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK--MTD 296 (638)
Q Consensus 219 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~--~~~ 296 (638)
|.+.|++++|+..|++..+..|.+...|..+...|...|++++|...|++..+.. +.+..+|..+...|...|. ...
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~ 142 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKK 142 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHH
Confidence 7777777777777777766666677777777777777777777777777777654 3456666666666655543 333
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006630 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356 (638)
Q Consensus 297 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 356 (638)
+...++.... ..|....+..+...+...|++++|...|++..+. .|+......+..
T Consensus 143 ~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~~ 198 (208)
T 3urz_A 143 LETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHHH
T ss_pred HHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 4444444331 2222233334455556667777777777777765 566655554443
No 100
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.00 E-value=1.2e-07 Score=91.60 Aligned_cols=226 Identities=7% Similarity=0.012 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HHc---CCHH
Q 006630 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE--ELEECVELMGEMRKIGCVPDVSNYNVVIRLA----CKL---GELK 435 (638)
Q Consensus 365 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~~~ 435 (638)
++|+++++.++..++. +...|+.--..+...+ .+++++++++.+...+ +.+..+|+.--..+ .+. ++++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 3444444444443221 2233333333444444 5555555555554443 23333333322222 333 5677
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCC------HH
Q 006630 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI--EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK------VE 507 (638)
Q Consensus 436 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~------~~ 507 (638)
+++.+++.+.+.+ +.+..+|+.-...+.+.|.++ +++++++++++.+ +-+...|..-...+.+.+. ++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d---~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD---LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 8888888877766 667777777777777777776 7888888888776 3666777666655666665 77
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhcCHHHHHHHHH
Q 006630 508 MAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE-ACSYCLDMMDAD--VMPQPDTFAKLMRGLKKLYNRQIAAEITE 584 (638)
Q Consensus 508 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~g~~~~A~~~~~ 584 (638)
++.+.+++++...+. |...|+.+...+.+.|+..+ +..++.++.+.+ -..++..+..+..++.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 888888888776433 77778888777877777444 445666555422 12356677778888888888888888888
Q ss_pred HHHH-HHHhccccc
Q 006630 585 KVRK-MAAERQITF 597 (638)
Q Consensus 585 ~~~~-~~p~~~~~~ 597 (638)
++.+ .+|.+...+
T Consensus 283 ~l~~~~Dpir~~yW 296 (306)
T 3dra_A 283 LLKSKYNPIRSNFW 296 (306)
T ss_dssp HHHHTTCGGGHHHH
T ss_pred HHHhccChHHHHHH
Confidence 8876 677765543
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.00 E-value=8.4e-09 Score=110.72 Aligned_cols=162 Identities=9% Similarity=-0.026 Sum_probs=106.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 006630 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510 (638)
Q Consensus 431 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 510 (638)
.|++++|+..|++..+.. +.+...|..+...|...|++++|++.|++..+.. +.+...+..+...+...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH---PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS---TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 366777777777776654 4456777777888888888888888888887765 345667777777788888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhh---cCHHHHHHHHHHHH
Q 006630 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL---YNRQIAAEITEKVR 587 (638)
Q Consensus 511 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~---g~~~~A~~~~~~~~ 587 (638)
+.++++++.. +.+...|..+..+|...|++++|.+.+++.++.. ..+...+..+...+... |++++|.+.+++++
T Consensus 78 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 8888877763 2256677778888888888888888888877642 22456677777788888 88888888888888
Q ss_pred HHHHhcccccc
Q 006630 588 KMAAERQITFK 598 (638)
Q Consensus 588 ~~~p~~~~~~~ 598 (638)
+.+|++...+.
T Consensus 156 ~~~p~~~~~~~ 166 (568)
T 2vsy_A 156 AQGVGAVEPFA 166 (568)
T ss_dssp HHTCCCSCHHH
T ss_pred hcCCcccChHH
Confidence 88887766553
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.97 E-value=3.9e-07 Score=87.93 Aligned_cols=222 Identities=7% Similarity=0.011 Sum_probs=138.3
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHhchhCCCCCCHHHHHHHHHHH----HhC-
Q 006630 150 KMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASAR--MVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL----CKN- 222 (638)
Q Consensus 150 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~----~~~- 222 (638)
+....++|+.+++.+...+|. ...+|+.--..+...+ .+++++++++.+.... +-+..+|+.--..+ ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~nP~--~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 45 AEEYSERALHITELGINELAS--HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHHCcH--HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc
Confidence 334446888888888888776 6667777777777777 8888888888877654 34455666554444 444
Q ss_pred --CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-----
Q 006630 223 --SSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLV--EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK----- 293 (638)
Q Consensus 223 --g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~----- 293 (638)
+++++++.+++.+.+..|.|-.+|+.-.-.+.+.|.++ ++++.++++.+.. +-|...|+.-.....+.+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhh
Confidence 67788888888887777778888887777777777777 7777777777765 3466666665555555554
Q ss_pred -HhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006630 294 -MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE-ANRAFVEMERSG--CEADVVTYTTLISGFCKSRKIDRCYE 369 (638)
Q Consensus 294 -~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~ 369 (638)
++++++.++.++...+. |...|+.+...+.+.|+... +..+..++.+.+ -..+...+..+...|.+.|+.++|++
T Consensus 201 ~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 55556665555554332 55555555555555554222 333444333221 02244555555555555555555555
Q ss_pred HHHHHHH
Q 006630 370 ILDSMIQ 376 (638)
Q Consensus 370 ~~~~m~~ 376 (638)
+++.+.+
T Consensus 280 ~~~~l~~ 286 (306)
T 3dra_A 280 VYDLLKS 286 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555554
No 103
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.95 E-value=2.8e-06 Score=88.58 Aligned_cols=369 Identities=9% Similarity=0.008 Sum_probs=207.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHhchhC-CCC-CCHHHHHH
Q 006630 138 YDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM-VKKAIEVLDEMPKY-GCE-PDEFVFGC 214 (638)
Q Consensus 138 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~-g~~-~~~~~~~~ 214 (638)
..+|...+..|-. |+++.+..+|++....- |+...|..-+....+.+. .+....+|+..+.. |.. .+...|..
T Consensus 15 R~vyer~l~~~P~-~~~e~~~~iferal~~~---ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 15 SAIMEHARRLYMS-KDYRSLESLFGRCLKKS---YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHSTTC---CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 3445555555544 77888888888877643 477777777776666553 35566677766543 433 35667777
Q ss_pred HHHHHH----hCCCHHHHHHHHHHHhccCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006630 215 LLDALC----KNSSVKEAAKLFDEMRERFKPS-L-RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288 (638)
Q Consensus 215 li~~~~----~~g~~~~A~~~~~~~~~~~~~~-~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 288 (638)
.+..+. ..|+++.+..+|++.... |+. . ..|...... .+......+..++.+..
T Consensus 91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~------------------ 150 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRIEKIRNGYMRALQT-PMGSLSELWKDFENF-ELELNKITGKKIVGDTL------------------ 150 (493)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHH------------------
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHH-HHHhccccHHHHHHHHh------------------
Confidence 666554 235677888888887663 322 1 122222111 11111112222222111
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc--C-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006630 289 AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM--E-----KMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361 (638)
Q Consensus 289 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g-----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 361 (638)
+.+..|..+++.+...-...+...|...++.-... | ..+.+..+|+++.... +.+...|...+.-+.+.
T Consensus 151 ---~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~ 226 (493)
T 2uy1_A 151 ---PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGI 226 (493)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 12223333333332210001223444444332211 0 0344566777776643 44567777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------C---CCCHHHHHHHHHHHH
Q 006630 362 RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG---------C---VPDVSNYNVVIRLAC 429 (638)
Q Consensus 362 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---------~---~~~~~~~~~li~~~~ 429 (638)
|+.++|..++++.... |....+.. .+....+.++. ++.+.+.- . .....+|...+..+.
T Consensus 227 ~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~ 297 (493)
T 2uy1_A 227 GQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVL 297 (493)
T ss_dssp TCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHH
Confidence 8888888888887776 33222211 11111111111 22221110 0 111245666777777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHH
Q 006630 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG-QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508 (638)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 508 (638)
+.+..+.|..+|+.. ... ..+...|...+..-.. .++.+.|..+|+...+... .+...+...++...+.|+.+.
T Consensus 298 r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~---~~~~~~~~yid~e~~~~~~~~ 372 (493)
T 2uy1_A 298 KKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP---DSTLLKEEFFLFLLRIGDEEN 372 (493)
T ss_dssp HHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHH
T ss_pred HcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHcCCHHH
Confidence 788899999999999 321 2344555433332222 3369999999999988642 233445667777788999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006630 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553 (638)
Q Consensus 509 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 553 (638)
|+.+|+.+. .....|...+..-...|+.+.+..+++++..
T Consensus 373 aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 373 ARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999873 2577899888888888999999998888764
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.94 E-value=7.6e-09 Score=113.14 Aligned_cols=173 Identities=8% Similarity=-0.098 Sum_probs=146.7
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006630 359 CKSRKIDRCYEILDSMI--------QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430 (638)
Q Consensus 359 ~~~g~~~~A~~~~~~m~--------~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 430 (638)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|.+.++++.+.. +.+...+..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 77899999999999998 432 2356788888999999999999999999998864 5678889999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 006630 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510 (638)
Q Consensus 431 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 510 (638)
.|++++|+..|++..+.+ +.+...|..+...|.+.|++++ ++.|+++++.+ +.+...+..+..++.+.|++++|.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN---DGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC---CchHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999876 5577899999999999999999 99999999876 456778999999999999999999
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHccCC
Q 006630 511 DVWSCIVTKGCELN-VYAWTIWIHSLFSNGH 540 (638)
Q Consensus 511 ~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~ 540 (638)
+.|+++++. .|+ ...|..+..++...|+
T Consensus 555 ~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 999999875 454 5677788888877665
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.94 E-value=5.4e-08 Score=90.48 Aligned_cols=189 Identities=11% Similarity=0.045 Sum_probs=130.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCC-CCH-HHHH
Q 006630 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLIT-TEVFVILMRRFASARMVKKAIEVLDEMPKYGCE-PDE-FVFG 213 (638)
Q Consensus 137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-~~~-~~~~ 213 (638)
+...+..+...+.+.|++++|+..|+++....|..+. ...+..+..++.+.|++++|+..|+++.+.... +.. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455666778888999999999999999988775433 467788889999999999999999998875311 111 2444
Q ss_pred HHHHHHHh------------------CCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006630 214 CLLDALCK------------------NSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFE 275 (638)
Q Consensus 214 ~li~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 275 (638)
.+..++.+ .|++++|...|+++.+..|.+...+........ +...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~----------~~~~~~----- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF----------LKDRLA----- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH----------HHHHHH-----
Confidence 45555443 567888888888887776666655543322111 001110
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006630 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN--ANSYTVLIQALCRMEKMEEANRAFVEMERSG 343 (638)
Q Consensus 276 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 343 (638)
.....+...|.+.|++++|...|+.+++...... ...+..+..+|.+.|+.++|.+.++.+...+
T Consensus 148 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ---KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1123456778888999999999998887632211 2467778888999999999999998887763
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.94 E-value=3.7e-08 Score=91.58 Aligned_cols=62 Identities=8% Similarity=-0.029 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006630 386 YLHIMLAHEKKEELEECVELMGEMRKIGCV-P-DVSNYNVVIRLACKLGELKEAVNVWNEMEAA 447 (638)
Q Consensus 386 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 447 (638)
+..+...+...|++++|...|+.+.+.... + ....+..+..+|.+.|++++|+..|+++.+.
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 70 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 70 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 334444455555555555555555543211 1 1234444455555555555555555555543
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.93 E-value=2.8e-08 Score=96.21 Aligned_cols=161 Identities=9% Similarity=-0.061 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHH-HHHHH
Q 006630 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT-LKALL 497 (638)
Q Consensus 419 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~-~~~ll 497 (638)
..+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|...++++.... |+... .....
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~----p~~~~~~~~~~ 192 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD----QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG----CSHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh----cchHHHHHHHH
Confidence 334444444555555555555555555443 3344455555555555555555555555544432 22221 11111
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhhc
Q 006630 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ---PDTFAKLMRGLKKLY 574 (638)
Q Consensus 498 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~g 574 (638)
..+...++.++|...+++++... +.+...+..+...|...|++++|+..|+++++. .|+ ...+..++..+...|
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHHHHHHHHcC
Confidence 22334444444555555554442 123444555555555555555555555555443 222 334455555555555
Q ss_pred CHHHHHHHHHHHH
Q 006630 575 NRQIAAEITEKVR 587 (638)
Q Consensus 575 ~~~~A~~~~~~~~ 587 (638)
+.+.|...+++.+
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 5555555555444
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.92 E-value=2.4e-08 Score=88.88 Aligned_cols=162 Identities=11% Similarity=0.080 Sum_probs=109.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH-H
Q 006630 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDA-L 219 (638)
Q Consensus 141 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~ 219 (638)
+..+...+.+.|++++|...|++....+|. +...+..+...+...|++++|+..|+.+.... |+...+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS--RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT--SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 445566777888888888888887776655 66777778888888888888888888876653 344433332212 1
Q ss_pred HhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHhHHH
Q 006630 220 CKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEP-DIVVYNNLLSGYAQMGKMTDAF 298 (638)
Q Consensus 220 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~ 298 (638)
...+....|...|++..+..|.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 122233346777777766666677777778888888888888888888777664222 2456777777777777777777
Q ss_pred HHHHHHHH
Q 006630 299 ELLKEMRR 306 (638)
Q Consensus 299 ~~~~~~~~ 306 (638)
..|++.+.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766543
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.90 E-value=5.6e-08 Score=94.11 Aligned_cols=167 Identities=13% Similarity=0.075 Sum_probs=128.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHH
Q 006630 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGC 214 (638)
Q Consensus 135 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ 214 (638)
+.+...+..+...+.+.|++++|...|++....+|. +...+..+...+...|++++|+..++++... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~ 189 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ--NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGL 189 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS--CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc--chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHH
Confidence 345566777888888889999999999998888776 6778888888888999999999999888766 355543333
Q ss_pred H-HHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcC
Q 006630 215 L-LDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFE-PDIVVYNNLLSGYAQMG 292 (638)
Q Consensus 215 l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g 292 (638)
. ...+.+.++.++|...|++.....|.+...+..+...|...|++++|...|.++.+.... .+...+..++..+...|
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2 233556677788888888887777888888888888888899999999888888876321 12567788888888888
Q ss_pred CHhHHHHHHHHHH
Q 006630 293 KMTDAFELLKEMR 305 (638)
Q Consensus 293 ~~~~a~~~~~~~~ 305 (638)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 8888887777654
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.90 E-value=2e-08 Score=89.42 Aligned_cols=162 Identities=11% Similarity=-0.028 Sum_probs=103.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHH-
Q 006630 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS- 499 (638)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~- 499 (638)
+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|+..|+++.... |+......+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~----p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY----QDNSYKSLIAKLE 83 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc----CChHHHHHHHHHH
Confidence 3444556677777788877777766554 4556677777777777888888887777765543 333222211111
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhcCHHH
Q 006630 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP-QPDTFAKLMRGLKKLYNRQI 578 (638)
Q Consensus 500 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~ 578 (638)
+...+...+|...++++++... -+...+..+..++...|++++|+..|+++++....+ +...+..+...+...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 1122233346777777776522 246777777788888888888888888777642211 24467777777777888888
Q ss_pred HHHHHHHHHH
Q 006630 579 AAEITEKVRK 588 (638)
Q Consensus 579 A~~~~~~~~~ 588 (638)
|...+++++.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888777664
No 111
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.88 E-value=2.7e-08 Score=82.91 Aligned_cols=107 Identities=11% Similarity=0.022 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006630 490 YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569 (638)
Q Consensus 490 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 569 (638)
...+......+.+.|++++|++.|+++++.. +.+...|..+..+|.+.|++++|+..|++.++.. ..+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 4467778888999999999999999998874 3367888899999999999999999999988752 3356778899999
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHhcccccc
Q 006630 570 LKKLYNRQIAAEITEKVRKMAAERQITFK 598 (638)
Q Consensus 570 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 598 (638)
+...|++++|++.++++++++|+++.+..
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~a~~ 119 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEEARE 119 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 99999999999999999999999887643
No 112
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.85 E-value=7.8e-09 Score=89.29 Aligned_cols=82 Identities=6% Similarity=-0.115 Sum_probs=36.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006630 214 CLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293 (638)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 293 (638)
.+...|.+.|++++|++.|++..+..|.+..+|..+...|.+.|++++|...|++..+.. +-+..+|..+...|.+.|+
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 114 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDV 114 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 344444444444444444444444334444444444444444444444444444444432 2233444444444444444
Q ss_pred HhH
Q 006630 294 MTD 296 (638)
Q Consensus 294 ~~~ 296 (638)
+++
T Consensus 115 ~~~ 117 (150)
T 4ga2_A 115 TDG 117 (150)
T ss_dssp SSS
T ss_pred hHH
Confidence 433
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.84 E-value=2.2e-08 Score=98.08 Aligned_cols=199 Identities=12% Similarity=0.027 Sum_probs=101.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006630 326 MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK-SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404 (638)
Q Consensus 326 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 404 (638)
.|++++|.+++++..+.. +. .+.. .+++++|...|.+. ...+...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KT---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CC---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--cc---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 355666666666655431 10 1222 35566666655543 334556677777777
Q ss_pred HHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 006630 405 LMGEMRKI----GCVP-DVSNYNVVIRLACKLGELKEAVNVWNEMEAA----SLSPG--TDSFVVMVHGFLGQGCLIEAC 473 (638)
Q Consensus 405 ~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~ 473 (638)
.+.+..+. +-.. -..+|+.+...|.+.|++++|+..|++..+. | .+. ..+++.+...|.. |++++|+
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 66665432 1000 1235555666666666666666666655432 1 111 2345555556655 6666666
Q ss_pred HHHHHHHhCCCCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHH
Q 006630 474 EYFKEMVGRGLLSAP---QYGTLKALLNSLLRAQKVEMAKDVWSCIVTK----GCELN-VYAWTIWIHSLFSNGHVKEAC 545 (638)
Q Consensus 474 ~~~~~m~~~~~~~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~ 545 (638)
..|++.+........ ...++..+...+.+.|++++|+..|+++++. +..+. ...+..++.++...|++++|+
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 666666553210000 0234555555666666666666666665543 11111 123444445555556666666
Q ss_pred HHHHHHH
Q 006630 546 SYCLDMM 552 (638)
Q Consensus 546 ~~~~~m~ 552 (638)
..|++.+
T Consensus 216 ~~~~~al 222 (307)
T 2ifu_A 216 KCVRESY 222 (307)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 6666655
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.83 E-value=8e-08 Score=94.10 Aligned_cols=166 Identities=10% Similarity=-0.056 Sum_probs=83.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCCc--HHHHHHHHH
Q 006630 427 LACKLGELKEAVNVWNEMEAA----SLSP-GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL-SAPQ--YGTLKALLN 498 (638)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~p~--~~~~~~ll~ 498 (638)
.|...|++++|...|.+..+. +-.+ -..+|+.+...|...|++++|+..|++.+..... ..+. ..++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455556666666666554332 1000 0235555666666666666666666655432100 0111 234555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCC---C--CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHH
Q 006630 499 SLLRAQKVEMAKDVWSCIVTKGCE---L--NVYAWTIWIHSLFSNGHVKEACSYCLDMMDA----DVMPQ-PDTFAKLMR 568 (638)
Q Consensus 499 ~~~~~g~~~~A~~~~~~~~~~~~~---p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~t~~~ll~ 568 (638)
.|.. |++++|+..|+++++.... + ...++..+...|.+.|++++|+..|++.++. +..+. ...+..++.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 5555 6666666666665543100 0 1344555666666666666666666665431 11111 123444455
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHhcc
Q 006630 569 GLKKLYNRQIAAEITEKVRKMAAERQ 594 (638)
Q Consensus 569 ~~~~~g~~~~A~~~~~~~~~~~p~~~ 594 (638)
.+...|+++.|...+++++ ++|+..
T Consensus 204 ~~~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred HHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence 5555566666666666666 655543
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.82 E-value=9.6e-08 Score=102.41 Aligned_cols=154 Identities=9% Similarity=-0.033 Sum_probs=102.8
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 006630 151 MRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAK 230 (638)
Q Consensus 151 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 230 (638)
.|++++|...|++..+.+|. +...+..+...+...|++++|++.|++..+.. +.+...+..+...|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ--DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp -------------------C--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 36677788888777776654 56677777777888888888888888777654 4456777778888888888888888
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CCHhHHHHHHHHHHHc
Q 006630 231 LFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM---GKMTDAFELLKEMRRK 307 (638)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 307 (638)
.|++..+..+.+...|..+...|.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 8888776667777788888888888888888888888877664 34566777777788887 8888888888877766
Q ss_pred C
Q 006630 308 G 308 (638)
Q Consensus 308 g 308 (638)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 116
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.82 E-value=2.3e-08 Score=86.08 Aligned_cols=117 Identities=10% Similarity=-0.063 Sum_probs=94.7
Q ss_pred HHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006630 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554 (638)
Q Consensus 475 ~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 554 (638)
.|++++... +.+...+..+...+...|++++|...|++++... +.+...|..+..+|...|++++|+..|+++++.
T Consensus 9 ~~~~al~~~---p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 9 TIAMLNEIS---SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp SHHHHTTCC---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHcCC---HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344554443 2345567777888899999999999999998863 337788889999999999999999999998875
Q ss_pred CCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 555 DVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 555 ~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
. ..+...+..+..++...|++++|+..++++++++|+++..
T Consensus 85 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 85 D-IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp S-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred C-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 2 2346778889999999999999999999999999988766
No 117
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.81 E-value=7.1e-07 Score=81.94 Aligned_cols=129 Identities=14% Similarity=0.139 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHH
Q 006630 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE----ELEECVELMGEMRKIGCVPDVSNYN 422 (638)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~ 422 (638)
+...+..|...|...+++++|++.|++..+.| +...+..+...|.. + +.++|.++|++..+.+ +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34444444444444444444444444444432 23333333333333 3 4444444444443322 233333
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhC
Q 006630 423 VVIRLACK----LGELKEAVNVWNEMEAASLS-PGTDSFVVMVHGFLG----QGCLIEACEYFKEMVGR 482 (638)
Q Consensus 423 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 482 (638)
.|..+|.. .+++++|+..|++..+.+.. .+...+..|...|.. .+++++|+.+|++..+.
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 33333333 34444444444444443300 013344444444444 34444444444444443
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.79 E-value=4.8e-06 Score=80.66 Aligned_cols=168 Identities=13% Similarity=0.040 Sum_probs=123.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc----HHHHH
Q 006630 424 VIRLACKLGELKEAVNVWNEMEAASL-SPGT----DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ----YGTLK 494 (638)
Q Consensus 424 li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~----~~~~~ 494 (638)
.+..+...|++++|..++++..+... .|+. ..+..+...+...|++++|+..|+++...... .++ ..++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~-~~~~~~~~~~~~ 159 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT-GIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC-CSCTTHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc-cccHHHHHHHHH
Confidence 36678889999999999998876431 1221 12334666677788999999999999884321 122 33678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHh----CCCCCC-HHHH
Q 006630 495 ALLNSLLRAQKVEMAKDVWSCIVTK-----GCELN-VYAWTIWIHSLFSNGHVKEACSYCLDMMD----ADVMPQ-PDTF 563 (638)
Q Consensus 495 ~ll~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~t~ 563 (638)
.+...|...|++++|..+|+++++. +..+. ..+|..+..+|.+.|++++|+.++++.++ .+..+. ...|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8888899999999999999998742 11222 23678888999999999999999988764 222232 5678
Q ss_pred HHHHHHHHhhc-CHHHHHHHHHHHHHHHHh
Q 006630 564 AKLMRGLKKLY-NRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 564 ~~ll~~~~~~g-~~~~A~~~~~~~~~~~p~ 592 (638)
..+..++.+.| ++++|.+.+++++++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~ 269 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 88888999999 469999999999887653
No 119
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.79 E-value=8.8e-07 Score=81.30 Aligned_cols=175 Identities=8% Similarity=0.011 Sum_probs=102.7
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 006630 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR----KIDRCYEILD 372 (638)
Q Consensus 297 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~ 372 (638)
|.+.|++..+.| +...+..|...|...+++++|...|++..+.| +...+..|...|.. + ++++|+++|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444444444432 44555555555555666666666666655543 44555555555554 4 5666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 006630 373 SMIQRGILPNQLTYLHIMLAHEK----KEELEECVELMGEMRKIGCV-PDVSNYNVVIRLACK----LGELKEAVNVWNE 443 (638)
Q Consensus 373 ~m~~~~~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~ 443 (638)
+..+.| +...+..+...+.. .+++++|.++|++..+.+.. .+...+..|..+|.. .+++++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 665543 44455555555554 56666777766666655411 115556666666666 6677777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 006630 444 MEAASLSPGTDSFVVMVHGFLGQ-G-----CLIEACEYFKEMVGRG 483 (638)
Q Consensus 444 m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~ 483 (638)
..+. +.+...+..|...|... | +.++|+.+|+...+.|
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7665 23444666666666542 2 6777777777777766
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.77 E-value=3.4e-08 Score=95.32 Aligned_cols=191 Identities=8% Similarity=-0.054 Sum_probs=121.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHH
Q 006630 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496 (638)
Q Consensus 417 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~l 496 (638)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+...|...|++++|+..+++.++.. +.+...+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l 78 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKAHFFL 78 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC---TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCCHHHHHHH
Confidence 44566667777788888888888888877764 4467778888888888888888888888887765 3556677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcC
Q 006630 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNV-YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN 575 (638)
Q Consensus 497 l~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 575 (638)
..++...|++++|...|+++.+.. |+. ..+...+....+. .++... .........++......+. .+. .|+
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~i~~~l~-~l~-~~~ 150 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKKRW-NSIEERRIHQESELHSYLT-RLI-AAE 150 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHHHH-HHHHHTCCCCCCHHHHHHH-HHH-HHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHHHH-HHHHHHHHhhhHHHHHHHH-HHH-HHH
Confidence 888888888888888888877651 110 0111111111111 111111 1222223333444433332 232 588
Q ss_pred HHHHHHHHHHHHHHHHhccccc----chhhhh-hhhhhHHHHHhhhhhh
Q 006630 576 RQIAAEITEKVRKMAAERQITF----KMYKRR-GERDLKEKAKKQVDGR 619 (638)
Q Consensus 576 ~~~A~~~~~~~~~~~p~~~~~~----~~y~~~-g~~~~A~~~~~~~~~~ 619 (638)
+++|.+.++++++.+|++.... .++... +.+++|.++|++..+.
T Consensus 151 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 151 RERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8889988888888888776553 344444 7788888888876553
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.76 E-value=3.1e-07 Score=84.28 Aligned_cols=128 Identities=9% Similarity=-0.082 Sum_probs=59.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 006630 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538 (638)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 538 (638)
+...+...|++++|+..|++.. .|+...+..+...+...|++++|...|+++++.. +.+...|..+..+|...
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 3344444444444444444331 2333444444444444455555555554444432 11334444444555555
Q ss_pred CCHHHHHHHHHHHHhCC--------------CCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc
Q 006630 539 GHVKEACSYCLDMMDAD--------------VMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAER 593 (638)
Q Consensus 539 g~~~~A~~~~~~m~~~~--------------~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 593 (638)
|++++|+..|+++++.. ..|+ ...+..+..++...|++++|...++++++..|++
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 55555555555444321 0111 1345555555555555555555555555555543
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.76 E-value=1.1e-06 Score=85.13 Aligned_cols=163 Identities=10% Similarity=-0.017 Sum_probs=124.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHH
Q 006630 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG----TLKALLNSLLRAQKVEMAKDVWSCIVTKGC-ELN----VYAW 528 (638)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~----~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~ 528 (638)
..+..+...|++++|..++++....... .|+.. .+..+...+...|++++|...|+++.+... .++ ..++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccC-ChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3467788999999999999999885421 23322 233466667778899999999999988522 223 3368
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc------
Q 006630 529 TIWIHSLFSNGHVKEACSYCLDMMD----A-DVMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT------ 596 (638)
Q Consensus 529 ~~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~------ 596 (638)
+.+..+|...|++++|+.+|+++++ . +..+. ..++..+...|.+.|++++|...+++++++.++....
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 9999999999999999999999874 2 21222 2368899999999999999999999999999886432
Q ss_pred c----chhhhhhh-hhhHHHHHhhhhhhhh
Q 006630 597 F----KMYKRRGE-RDLKEKAKKQVDGRKR 621 (638)
Q Consensus 597 ~----~~y~~~g~-~~~A~~~~~~~~~~~~ 621 (638)
+ .+|.+.|+ +++|.+.+++.....+
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 1 57888995 6999999988555444
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.76 E-value=1e-06 Score=85.46 Aligned_cols=171 Identities=12% Similarity=0.043 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CCc--H
Q 006630 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT------DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS-APQ--Y 490 (638)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~p~--~ 490 (638)
.+...+..+...|++++|.+.+++..+.. +... ..+..+...+...|++++|+..+++........ .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 44455677888899999999888877653 2222 223445666778889999999999988643210 122 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC-
Q 006630 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTK-GCELN-----VYAWTIWIHSLFSNGHVKEACSYCLDMMDA----DVMPQ- 559 (638)
Q Consensus 491 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~- 559 (638)
.++..+...|...|++++|...|+++.+. ...|+ ..++..+..+|...|++++|+.++++.++. +....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47788888899999999999999988732 01122 257888889999999999999999887652 11111
Q ss_pred HHHHHHHHHHHHhhcCHHHH-HHHHHHHHHHHH
Q 006630 560 PDTFAKLMRGLKKLYNRQIA-AEITEKVRKMAA 591 (638)
Q Consensus 560 ~~t~~~ll~~~~~~g~~~~A-~~~~~~~~~~~p 591 (638)
..+|..+...+.+.|++++| ...+++++++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 56788888899999999999 788888887643
No 124
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.75 E-value=3.5e-06 Score=81.79 Aligned_cols=189 Identities=8% Similarity=0.075 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 006630 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG--ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC-LIEACEY 475 (638)
Q Consensus 399 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~ 475 (638)
+++++.+++.+.... +.+..+|+.-.-.+.+.| .+++++.+++.+.+.+ +-|...|+.-...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 455666666666543 455666665555555666 3677777777777766 5677777777777777776 5778888
Q ss_pred HHHHHhCCCCCCCcHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc---
Q 006630 476 FKEMVGRGLLSAPQYGTLKALLNSLLRA--------------QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN--- 538 (638)
Q Consensus 476 ~~~m~~~~~~~~p~~~~~~~ll~~~~~~--------------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~--- 538 (638)
++++++.. +-+...|+.....+.+. +.++++.+.+..++...+. |...|+.+-..+.+.
T Consensus 168 ~~~~I~~~---p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 168 TDSLITRN---FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHHHC---SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCG
T ss_pred HHHHHHHC---CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCc
Confidence 88877766 35666666655555444 4477888888888776433 677777666666555
Q ss_pred --------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 539 --------GHVKEACSYCLDMMDADVMPQPDTFAKLMRG-----LKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 539 --------g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~-----~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
+.++++++.++++++. .||. .|..+..+ ....|..++...++.++.+++|-....
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~ 311 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 311 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhH
Confidence 4578999999999865 5664 33322222 223577888999999999999965444
No 125
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.74 E-value=5.9e-06 Score=80.53 Aligned_cols=178 Identities=10% Similarity=-0.004 Sum_probs=120.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhC-C
Q 006630 146 KSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASAR-MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN-S 223 (638)
Q Consensus 146 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g 223 (638)
..+.+.+..++|+++++.+...+|. +..+|+.--..+...+ .+++++++++.+.... +.+..+|+.-...+.+. +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~nP~--~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMNPA--HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHhCch--hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcC
Confidence 3344445567888888888888876 6667777766777777 4888888888888764 55677787777666665 6
Q ss_pred -CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-
Q 006630 224 -SVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLV--------EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK- 293 (638)
Q Consensus 224 -~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~- 293 (638)
++++++++++.+.+..+.|..+|+.-.-.+.+.|.++ ++++.++++.+.. +-|...|+.....+.+.+.
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTC
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccc
Confidence 7788888888888887888888887766666666555 7777777777654 3466667666666655554
Q ss_pred ------HhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 006630 294 ------MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328 (638)
Q Consensus 294 ------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 328 (638)
++++++.+++.+..... |...|+.+-..+.+.|+
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 45566666655554322 55555555544444443
No 126
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.72 E-value=1.1e-07 Score=81.73 Aligned_cols=103 Identities=10% Similarity=-0.022 Sum_probs=72.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 006630 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP-QPDTFAKLM 567 (638)
Q Consensus 489 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll 567 (638)
+...+..+...+.+.|++++|...|++++...+ .+...|..+..+|...|++++|+..|+++++. .| ++..|..+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHH
Confidence 344566666677777777777777777776632 25667777777777777777777777777754 33 355677777
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhcc
Q 006630 568 RGLKKLYNRQIAAEITEKVRKMAAERQ 594 (638)
Q Consensus 568 ~~~~~~g~~~~A~~~~~~~~~~~p~~~ 594 (638)
.++...|++++|+..+++++++.|+.+
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 777777777777777777777777654
No 127
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.72 E-value=1.4e-07 Score=80.34 Aligned_cols=107 Identities=15% Similarity=-0.032 Sum_probs=90.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006630 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568 (638)
Q Consensus 489 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 568 (638)
+...+..+...+.+.|++++|...|+.++.... .+...|..+..+|...|++++|+..|++.++.. ..+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 445666777788899999999999999988742 377888999999999999999999999998753 234667888999
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 569 GLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 569 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
++...|++++|...++++++++|+++...
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 123 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALAAAQPAHE 123 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCcchH
Confidence 99999999999999999999999887663
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.67 E-value=1.5e-06 Score=75.75 Aligned_cols=131 Identities=9% Similarity=0.001 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006630 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534 (638)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 534 (638)
.|..+...+...|++++|+..|++..... +.+..++..+...+...|++++|...++++++.. +.+...|..+..+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 44455555555666666666666655543 2344455555555556666666666666555542 2234455555555
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 006630 535 LFSNGHVKEACSYCLDMMDADVMPQPDTF--AKLMRGLKKLYNRQIAAEITEKVRKMA 590 (638)
Q Consensus 535 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~--~~ll~~~~~~g~~~~A~~~~~~~~~~~ 590 (638)
+...|++++|...++++++.. ..+...+ ...+..+...|++++|...+++..+..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 666666666666665555431 1122223 222222444555555555555555444
No 129
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.67 E-value=1.4e-07 Score=83.83 Aligned_cols=125 Identities=10% Similarity=-0.009 Sum_probs=61.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHccCCH--H
Q 006630 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS-LFSNGHV--K 542 (638)
Q Consensus 466 ~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~--~ 542 (638)
.|++++|+..+++..... +.+...+..+...+...|++++|...|+++.+... .+...|..+..+ +...|++ +
T Consensus 23 ~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN---PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp ----CCCCHHHHHHHHHC---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCH
T ss_pred ccCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchH
Confidence 344555555555554443 23344455555555555555555555555554421 134444555555 4455555 5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccc
Q 006630 543 EACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595 (638)
Q Consensus 543 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 595 (638)
+|+..++++++.. ..+...+..+...+...|++++|...++++++.+|+++.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 5555555555431 112444555555555556666666666666665555443
No 130
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.65 E-value=3.2e-07 Score=83.37 Aligned_cols=165 Identities=10% Similarity=-0.086 Sum_probs=106.7
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C-CCCCcHHHHHHHHHHHHHcCC
Q 006630 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG--L-LSAPQYGTLKALLNSLLRAQK 505 (638)
Q Consensus 429 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~-~~~p~~~~~~~ll~~~~~~g~ 505 (638)
...|++++|.+.++.+.. ........+..+...+...|++++|+..+++..... . ..+....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 346777777775544433 112345677777777888888888888887776521 0 001234456667777888888
Q ss_pred HHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhhc
Q 006630 506 VEMAKDVWSCIVTK----GCEL--NVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD-VMPQ----PDTFAKLMRGLKKLY 574 (638)
Q Consensus 506 ~~~A~~~~~~~~~~----~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~----~~t~~~ll~~~~~~g 574 (638)
+++|.+.+++.... +..| ....+..+...+...|++++|...+++.++.. -.++ ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888888877654 1111 23456777788888888888888888876421 0112 233567777888889
Q ss_pred CHHHHHHHHHHHHHHHHhcc
Q 006630 575 NRQIAAEITEKVRKMAAERQ 594 (638)
Q Consensus 575 ~~~~A~~~~~~~~~~~p~~~ 594 (638)
++++|.+.+++++++..+..
T Consensus 162 ~~~~A~~~~~~al~~~~~~~ 181 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIFAELE 181 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHcC
Confidence 99999999998888776543
No 131
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.65 E-value=2.7e-06 Score=77.90 Aligned_cols=126 Identities=16% Similarity=-0.048 Sum_probs=91.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC
Q 006630 178 VILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG 257 (638)
Q Consensus 178 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g 257 (638)
..+...+...|++++|+..|++.. .|+..++..+...|.+.|++++|...|++.....+.+...|..+...|...|
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 335556667788888888887764 4577777788888888888888888888777666677778888888888888
Q ss_pred CHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 006630 258 KLVEAKYVLVQMKDAGFE--------------P-DIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307 (638)
Q Consensus 258 ~~~~A~~~~~~m~~~g~~--------------p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 307 (638)
++++|.+.|++..+.... | ....+..+..++...|++++|.+.++...+.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 888888888887765311 1 1256667777777777777777777777765
No 132
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.65 E-value=1e-06 Score=76.91 Aligned_cols=128 Identities=5% Similarity=-0.092 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 006630 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDA 218 (638)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 218 (638)
..|..+...+...|++++|...|++.....|. +..++..+...+...|++++|+..+++..+.. +.+..++..+...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 34556666666777777777777776666543 45566666666666666666666666665543 3345566666666
Q ss_pred HHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHH
Q 006630 219 LCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYG--WCKEGKLVEAKYVLVQM 269 (638)
Q Consensus 219 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m 269 (638)
+...|++++|...|++.....+.+...+..+..+ +...|++++|...+.+.
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6666666666666666655545555555333322 55556666666655544
No 133
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.64 E-value=1.4e-05 Score=77.86 Aligned_cols=172 Identities=10% Similarity=0.044 Sum_probs=129.3
Q ss_pred CCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc-C-CHHHHHH
Q 006630 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNS-SVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKE-G-KLVEAKY 264 (638)
Q Consensus 188 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~A~~ 264 (638)
+..++|+++++.++..+ +-+..+|+.--..+...| .+++++.+++.+....|.+..+|+.-...+.+. + +++++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 34467888898888775 456677888877887888 599999999999988899999999988888777 7 8899999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHh--------HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC-------H
Q 006630 265 VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT--------DAFELLKEMRRKGCDPNANSYTVLIQALCRMEK-------M 329 (638)
Q Consensus 265 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-------~ 329 (638)
+++++.+.. +-|..+|+--.-.+.+.|.++ ++++.++++++..+. |...|+.....+.+.++ +
T Consensus 147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 147 YIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHH
Confidence 999999775 457778877666666655555 778888888776443 77777777777766665 6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006630 330 EEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363 (638)
Q Consensus 330 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 363 (638)
+++++.++++.... +-|...|+-+-..+.+.|+
T Consensus 225 ~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 225 QDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 77777777777654 3466777766665555554
No 134
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.64 E-value=8.3e-07 Score=73.69 Aligned_cols=109 Identities=7% Similarity=-0.014 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 006630 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDA 218 (638)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 218 (638)
..|......|.+.|++++|+..|++..+.+|. +...|..+..++...|++++|+..|++.++.. +.+...|..+..+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE--NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 45666667777777777777777777776654 56667777777777777777777777766653 3456667777777
Q ss_pred HHhCCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 006630 219 LCKNSSVKEAAKLFDEMRERFKPSLRHFTSLL 250 (638)
Q Consensus 219 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 250 (638)
|...|++++|++.|++..+..|.+...+..|.
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 77777777777777776665566666555544
No 135
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.64 E-value=3.9e-07 Score=90.29 Aligned_cols=83 Identities=8% Similarity=0.015 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhh
Q 006630 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYK 601 (638)
Q Consensus 526 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~ 601 (638)
..|..+..+|.+.|++++|+..|+++++.. ..+...|..+..++...|++++|+..++++++++|+++.++ .+|.
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 444555555555555555555555554431 12344455555555555555555555555555555554443 3445
Q ss_pred hhhhhhhH
Q 006630 602 RRGERDLK 609 (638)
Q Consensus 602 ~~g~~~~A 609 (638)
..|++++|
T Consensus 276 ~~~~~~~a 283 (336)
T 1p5q_A 276 RIRRQLAR 283 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555555
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.63 E-value=4e-07 Score=82.71 Aligned_cols=158 Identities=9% Similarity=-0.063 Sum_probs=118.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcc
Q 006630 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK----GCEL-NVYAWTIWIHSLFSN 538 (638)
Q Consensus 464 ~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~ 538 (638)
...|++++|.++++.+.... .....++..+...+...|++++|...+++.... +..| ....+..+...+...
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHP---ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA 79 (203)
T ss_dssp ----CHHHHHHHHHHHHTST---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHhcCCh---HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence 45799999999665554421 245678888889999999999999999998773 2122 345678888999999
Q ss_pred CCHHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----------chhhh
Q 006630 539 GHVKEACSYCLDMMDA----DVMP--QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----------KMYKR 602 (638)
Q Consensus 539 g~~~~A~~~~~~m~~~----~~~p--~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----------~~y~~ 602 (638)
|++++|...+++.++. +-.| ....+..+...+...|++++|...++++++..++..... .+|..
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 9999999999987652 2111 134577888899999999999999999998876533221 57889
Q ss_pred hhhhhhHHHHHhhhhhhhhhhh
Q 006630 603 RGERDLKEKAKKQVDGRKRRAR 624 (638)
Q Consensus 603 ~g~~~~A~~~~~~~~~~~~~~~ 624 (638)
.|++++|.+.+++..+..++..
T Consensus 160 ~g~~~~A~~~~~~al~~~~~~~ 181 (203)
T 3gw4_A 160 EKNLLEAQQHWLRARDIFAELE 181 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999666655443
No 137
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.63 E-value=9.1e-07 Score=75.19 Aligned_cols=105 Identities=13% Similarity=0.008 Sum_probs=80.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------C-----HHHHHHHHHHHHccCCHHHHHHHHHHHHhC-----CC
Q 006630 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCEL------N-----VYAWTIWIHSLFSNGHVKEACSYCLDMMDA-----DV 556 (638)
Q Consensus 493 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p------~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~ 556 (638)
+......+.+.|++++|...|+++++..... + ...|..+..++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3444555666667777777776666652110 2 238888899999999999999999988863 23
Q ss_pred CCCH-HHH----HHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 557 MPQP-DTF----AKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 557 ~p~~-~t~----~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
.|+. ..| .....++...|++++|+..++++++++|++....
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 6764 468 8999999999999999999999999999998874
No 138
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.62 E-value=1.4e-06 Score=71.60 Aligned_cols=114 Identities=13% Similarity=0.079 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 006630 138 YDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217 (638)
Q Consensus 138 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 217 (638)
..+|..+...+.+.|++++|...|+++....|. +..++..+...+...|++++|+.+|+++.+.. +.+..++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 455666666666667777777776666665543 45556666666666666666666666665543 334555566666
Q ss_pred HHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 006630 218 ALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWC 254 (638)
Q Consensus 218 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (638)
.|...|++++|...|+++....|.+...+..+...+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 6666666666666666655544445555555444443
No 139
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.61 E-value=4.6e-07 Score=77.80 Aligned_cols=94 Identities=11% Similarity=-0.079 Sum_probs=40.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc
Q 006630 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKE 256 (638)
Q Consensus 177 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 256 (638)
+..+...+.+.|++++|+..|+++.+.. +.+...|..+..+|...|++++|+..|++.....|.+...|..+..+|.+.
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~l 117 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRL 117 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 3333334444444444444444444332 223344444444444444444444444444433333444444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 006630 257 GKLVEAKYVLVQMKD 271 (638)
Q Consensus 257 g~~~~A~~~~~~m~~ 271 (638)
|++++|...|++..+
T Consensus 118 g~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 118 KAPLKAKECFELVIQ 132 (151)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444443
No 140
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.61 E-value=6.4e-07 Score=74.36 Aligned_cols=101 Identities=11% Similarity=0.064 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006630 490 YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569 (638)
Q Consensus 490 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 569 (638)
...+..+...+.+.|++++|...|+++++.. +.+...|..+..+|.+.|++++|+..+++.++.. ..+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456667778888899999999999888763 2367888888999999999999999999988752 2346678888889
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHh
Q 006630 570 LKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 570 ~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
+...|++++|...++++++++|+
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~ 104 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAE 104 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999943
No 141
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.60 E-value=7e-06 Score=79.50 Aligned_cols=131 Identities=9% Similarity=0.103 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHhchhCCC---CCC--HH
Q 006630 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITT----EVFVILMRRFASARMVKKAIEVLDEMPKYGC---EPD--EF 210 (638)
Q Consensus 140 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~---~~~--~~ 210 (638)
.+...+..+...|++++|.+.+.+.....+..... ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 44455666667777777777776666544321111 1122233344455566666665555443210 111 23
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHh---ccCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 211 VFGCLLDALCKNSSVKEAAKLFDEMR---ERFKPS----LRHFTSLLYGWCKEGKLVEAKYVLVQMK 270 (638)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 270 (638)
+++.+...|...|++++|...|++.. +..+.+ ..+++.+...|...|++++|...+++..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 45555555555555555555555543 111111 1344445555555555555555555443
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.60 E-value=2.3e-06 Score=80.64 Aligned_cols=199 Identities=8% Similarity=-0.082 Sum_probs=128.0
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHhchh------------CCCC----
Q 006630 150 KMRKFGAVWALMEEMRKEKPQLITTEVFVIL-------MRRFASARMVKKAIEVLDEMPK------------YGCE---- 206 (638)
Q Consensus 150 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~A~~~~~~m~~------------~g~~---- 206 (638)
..+++..|.+.|.++...+|. ....|..+ ...+.+.++..+++..+..-.. .|+-
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~--~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES--ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChh--hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 578899999999999998876 66678776 3445554445555555554443 1210
Q ss_pred ----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHH
Q 006630 207 ----PDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD--IVV 280 (638)
Q Consensus 207 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~ 280 (638)
--......+..++...|++++|.++|+.+....|.+. ..-.+...+.+.+++++|+..|+...... .|. ...
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 0022344566677778888888888888776544444 66666667888888888888887554321 111 235
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006630 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN--ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354 (638)
Q Consensus 281 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 354 (638)
+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++... .|+...+..|
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL 247 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence 66677778888888888888887764332143 234555666777778888888888887776 4554434333
No 143
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.60 E-value=1.2e-05 Score=77.94 Aligned_cols=181 Identities=7% Similarity=-0.050 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCC-HHHHH
Q 006630 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG--CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK-VEMAK 510 (638)
Q Consensus 434 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~-~~~A~ 510 (638)
+++++.+++.+...+ +.+..+|+.-...+...| .+++++.+++.+.+.. +-+..+|..-.-.+...|. ++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d---prNy~AW~~R~~vl~~l~~~~~eel 165 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD---ERNFHCWDYRRFVAAQAAVAPAEEL 165 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 678999999998876 778899998888888888 4899999999999987 5788888888777888888 69999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcc--------------CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhh--
Q 006630 511 DVWSCIVTKGCELNVYAWTIWIHSLFSN--------------GHVKEACSYCLDMMDADVMP-QPDTFAKLMRGLKKL-- 573 (638)
Q Consensus 511 ~~~~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~-- 573 (638)
+.++.+++..+. |...|+.....+... +.++++++++.+.+.. .| |...|.-+-..+.+.
T Consensus 166 ~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~ 242 (331)
T 3dss_A 166 AFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSG 242 (331)
T ss_dssp HHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccC
Confidence 999999987544 788888877766654 5588999999998865 45 566676555555444
Q ss_pred ---------cCHHHHHHHHHHHHHHHHhcccccc-------hhhhhhhhhhHHHHHhhhhhhhh
Q 006630 574 ---------YNRQIAAEITEKVRKMAAERQITFK-------MYKRRGERDLKEKAKKQVDGRKR 621 (638)
Q Consensus 574 ---------g~~~~A~~~~~~~~~~~p~~~~~~~-------~y~~~g~~~~A~~~~~~~~~~~~ 621 (638)
+-++++++.++++++++|++...+. .....|..+++...+.++.+..+
T Consensus 243 ~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 243 RCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred ccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 4689999999999999999866541 12245777788888888665554
No 144
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.59 E-value=2.6e-06 Score=71.63 Aligned_cols=108 Identities=16% Similarity=0.136 Sum_probs=91.2
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006630 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKL 566 (638)
Q Consensus 487 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 566 (638)
+.+...+..+...+...|++++|...|++++... +.+...|..+..++...|++++|+..+++.++.. ..+...|..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 3567788888888999999999999999988873 2367888999999999999999999999998753 3357788899
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 567 MRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 567 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
..++...|+++.|...+++++++.|++...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 113 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLN 113 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHH
Confidence 999999999999999999999999995433
No 145
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.59 E-value=6.9e-07 Score=74.61 Aligned_cols=108 Identities=7% Similarity=0.024 Sum_probs=80.9
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006630 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567 (638)
Q Consensus 488 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 567 (638)
.+...+..+...+...|++++|...|+++.+.. +.+...|..+..++...|++++|+..++++++.. ..+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 345567777777788888888888888877652 2256777778888888888888888888877642 23566777888
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 568 RGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 568 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
.++...|++++|.+.++++++.+|++...+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 121 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAA 121 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHH
Confidence 888888888888888888888888776553
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.59 E-value=9.1e-07 Score=73.84 Aligned_cols=120 Identities=7% Similarity=-0.060 Sum_probs=84.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHH
Q 006630 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGC 214 (638)
Q Consensus 135 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ 214 (638)
+.+...|..+...+.+.|++++|...|++.....|. +...+..+...+...|++++|+..+++..+.. +.+..++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 89 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK--DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTR 89 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT--CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 456677778888888888888888888887776654 56677777777777777888877777776653 345667777
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC
Q 006630 215 LLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG 257 (638)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g 257 (638)
+..+|.+.|++++|...|++.....+.+...+..+...+.+.|
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 7777777777777777777766554555566666666655544
No 147
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.58 E-value=1.1e-06 Score=82.87 Aligned_cols=193 Identities=10% Similarity=-0.110 Sum_probs=130.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHCCCCCC---------------
Q 006630 395 KKEELEECVELMGEMRKIGCVPDVSNYNVV-------IRLACKLGELKEAVNVWNEMEAASLSPG--------------- 452 (638)
Q Consensus 395 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------- 452 (638)
..++...|.+.|.++.+.. +.....|..+ ...+.+.++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 4567777777777776653 4445555555 3444444444555554444433 1111
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-
Q 006630 453 -------TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN- 524 (638)
Q Consensus 453 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~- 524 (638)
...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~----p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~ 169 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG----SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFL 169 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT----CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-Cccc
Confidence 1344556777888899999999988877654 544455555667888999999999998665431 111
Q ss_pred -HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 525 -VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ--PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 525 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
...+..+..++...|++++|+..|++.......|. ...+.....++.+.|+.++|...+++++..+|+ +.+
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~ 243 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKV 243 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHH
Confidence 23677788899999999999999998875433264 335667777888999999999999999999998 554
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.57 E-value=6.8e-07 Score=79.28 Aligned_cols=121 Identities=9% Similarity=0.096 Sum_probs=95.2
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHH-HHHcCCH-
Q 006630 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS-LLRAQKV- 506 (638)
Q Consensus 429 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~-~~~~g~~- 506 (638)
...|++++|...+++..+.. +.+...|..+...|...|++++|+..|+++.... +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR---GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhcCCcc
Confidence 45678888888888887765 5677888888999999999999999999988876 3566677777777 7788888
Q ss_pred -HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006630 507 -EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554 (638)
Q Consensus 507 -~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 554 (638)
++|...++++++... .+...|..+..+|...|++++|...|+++++.
T Consensus 97 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 97 TAQTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 999999999888632 25777888889999999999999999998875
No 149
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.56 E-value=2.5e-06 Score=69.99 Aligned_cols=96 Identities=17% Similarity=0.122 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 006630 175 EVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWC 254 (638)
Q Consensus 175 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (638)
..+..+...+...|++++|++.++++.+.. +.+..++..+...+.+.|++++|...|+++....+.+..++..+...|.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 344444445555555555555555544432 2334444555555555555555555555544444444445555555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 006630 255 KEGKLVEAKYVLVQMKD 271 (638)
Q Consensus 255 ~~g~~~~A~~~~~~m~~ 271 (638)
..|++++|...|+++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 55555555555555444
No 150
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.56 E-value=1.8e-06 Score=71.68 Aligned_cols=119 Identities=12% Similarity=0.007 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHH
Q 006630 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL 216 (638)
Q Consensus 137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li 216 (638)
+...+..+...+...|++++|...|++.....|. +...+..+...+...|++++|+..++...+.. +.+...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA--NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHH
Confidence 3445666666666777777777777776665543 45566666666666666666666666665542 33455666666
Q ss_pred HHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC
Q 006630 217 DALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGK 258 (638)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 258 (638)
..|.+.|++++|...|++.....+.+...+..+...+.+.|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 666666666666666666655545555666666666555554
No 151
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.55 E-value=1.1e-06 Score=76.83 Aligned_cols=106 Identities=13% Similarity=0.037 Sum_probs=91.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006630 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568 (638)
Q Consensus 489 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 568 (638)
+...+..+...+...|++++|+..|+++++.. +.+...|..+..+|...|++++|+..|++.++.. ..+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45577778888899999999999999998873 2267888999999999999999999999998753 234778999999
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 569 GLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 569 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
++...|++++|...++++++++|+++..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~ 115 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSD 115 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHH
Confidence 9999999999999999999999998874
No 152
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.55 E-value=5.9e-07 Score=77.09 Aligned_cols=110 Identities=12% Similarity=-0.001 Sum_probs=76.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006630 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519 (638)
Q Consensus 440 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 519 (638)
.|+++...+ +.+...+..+...+...|++++|+..|++++... +.+...+..+..++...|++++|...|++++..
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD---HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344444433 3344566667777777888888888888777765 356667777777777888888888888887776
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006630 520 GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554 (638)
Q Consensus 520 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 554 (638)
.. .+...|..+..+|...|++++|+..|++.++.
T Consensus 85 ~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 85 DI-XEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp ST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 32 25667777777888888888888888777653
No 153
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.53 E-value=5.2e-07 Score=86.92 Aligned_cols=95 Identities=11% Similarity=-0.031 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 006630 138 YDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217 (638)
Q Consensus 138 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 217 (638)
...+..+...+.+.|++++|+..|++.....|. +...+..+...+...|++++|+..+++..+.. +.+...+..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL--VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 344445555555555555555555555554433 34444445555555555555555555444432 223444444444
Q ss_pred HHHhCCCHHHHHHHHHHH
Q 006630 218 ALCKNSSVKEAAKLFDEM 235 (638)
Q Consensus 218 ~~~~~g~~~~A~~~~~~~ 235 (638)
+|...|++++|...|++.
T Consensus 81 ~~~~~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRA 98 (281)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 444455555555444443
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.49 E-value=1.5e-07 Score=85.54 Aligned_cols=118 Identities=11% Similarity=-0.046 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C--------------CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006630 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCE-L--------------NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556 (638)
Q Consensus 492 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p--------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 556 (638)
.+..+...+...|++++|...|+++++.... | ....|..+..+|...|++++|+..+++.++..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 3444445555555555565555555543111 1 12677788888889999999999998888752
Q ss_pred CCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhHH
Q 006630 557 MPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLKE 610 (638)
Q Consensus 557 ~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~ 610 (638)
..+...+..+..++...|+++.|.+.++++++++|+++.+. .++...|+.+++.
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 33567788888889999999999999999999999887764 4566667776666
No 155
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.49 E-value=3.5e-06 Score=83.40 Aligned_cols=134 Identities=10% Similarity=0.018 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006630 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ---------------YGTLKALLNSLLRAQKVEMAKDVWSCIV 517 (638)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~---------------~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 517 (638)
...|..+...|.+.|++++|+..|++.+.... .+ ..++..+..++.+.|++++|+..+++++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p---~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLE---YESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT---TCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh---ccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45677777788888888888888888877652 22 4678888889999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhcCHHHH-HHHHHHHHHHHHh
Q 006630 518 TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP-QPDTFAKLMRGLKKLYNRQIA-AEITEKVRKMAAE 592 (638)
Q Consensus 518 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~A-~~~~~~~~~~~p~ 592 (638)
+.. +.+...|..+..+|...|++++|+..|+++++. .| +...+..+..++...|++++| ...++++++.-++
T Consensus 224 ~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 297 (336)
T 1p5q_A 224 ELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAE 297 (336)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 874 236788899999999999999999999999875 44 566788888889999999988 5677777765444
No 156
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.48 E-value=1.4e-06 Score=71.80 Aligned_cols=100 Identities=13% Similarity=-0.076 Sum_probs=73.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 006630 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP-QPDTFAKLMRGLK 571 (638)
Q Consensus 493 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~ 571 (638)
+..+...+.+.|++++|...|+++++... .+...|..+..++...|++++|+..|++.++. .| +...+..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 34456677788888888888888887632 26777888888888888888888888888765 44 4567778888888
Q ss_pred hhcCHHHHHHHHHHHHHHHHhccc
Q 006630 572 KLYNRQIAAEITEKVRKMAAERQI 595 (638)
Q Consensus 572 ~~g~~~~A~~~~~~~~~~~p~~~~ 595 (638)
..|++++|+..++++++.+|+++.
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCCC
Confidence 888888888888888888887653
No 157
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.48 E-value=4.1e-06 Score=69.37 Aligned_cols=114 Identities=10% Similarity=-0.030 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc
Q 006630 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKE 256 (638)
Q Consensus 177 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 256 (638)
+..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...++......+.+...|..+...|...
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSL 93 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHh
Confidence 3344444444555555555555444332 223444444444444455555555555444443344444444444444444
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 006630 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG 292 (638)
Q Consensus 257 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 292 (638)
|++++|...|++..+.. +.+...+..+..++...|
T Consensus 94 ~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 94 NKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 44444444444444432 223333444444443333
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=3.3e-06 Score=71.91 Aligned_cols=106 Identities=9% Similarity=0.018 Sum_probs=75.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006630 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN----VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFA 564 (638)
Q Consensus 489 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 564 (638)
+...+..+...+...|++++|...|+++++. .|+ ...|..+..+|...|++++|+..+++.++.. ..+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4556666666677777777777777777664 344 5667777777788888888888887776542 22456677
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 565 KLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 565 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
.+..++...|++++|...++++++++|+++...
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 136 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQ 136 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 777778888888888888888888888776554
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.40 E-value=1.4e-06 Score=72.48 Aligned_cols=100 Identities=11% Similarity=0.138 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC--CCCC----HHHHHH
Q 006630 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD--VMPQ----PDTFAK 565 (638)
Q Consensus 492 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~----~~t~~~ 565 (638)
++..+.+.+.+.|++++|++.|+++++... -+...|..+..+|...|++++|+..+++.++.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 455566677777777777777777766532 246667777777777777777777777766421 1111 235666
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 566 LMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 566 ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
+..++...|++++|++.++++++..|+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 777777778888888888888776654
No 160
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.39 E-value=1.2e-05 Score=65.15 Aligned_cols=109 Identities=12% Similarity=-0.020 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 006630 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDA 218 (638)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 218 (638)
..+..+...+...|++++|...|++.....|. +...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH--NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 45556666666677777777777766665543 45556666666666666666666666665543 3345556666666
Q ss_pred HHhCCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 006630 219 LCKNSSVKEAAKLFDEMRERFKPSLRHFTSLL 250 (638)
Q Consensus 219 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 250 (638)
+...|++++|...|+...+..|.+...+..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 66666666666666666555454554444433
No 161
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.38 E-value=6e-06 Score=68.32 Aligned_cols=96 Identities=14% Similarity=-0.002 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 006630 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDA 218 (638)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 218 (638)
..|..+...+.+.|++++|+..|++....+|. +...|..+..++...|++++|+..|++..+.. +.+...+..+..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE--DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 34555556666666666666666666665543 45556666666666666666666666655543 3345555556666
Q ss_pred HHhCCCHHHHHHHHHHHhc
Q 006630 219 LCKNSSVKEAAKLFDEMRE 237 (638)
Q Consensus 219 ~~~~g~~~~A~~~~~~~~~ 237 (638)
+...|++++|...|++..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 6666666666666655544
No 162
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.38 E-value=5.9e-06 Score=68.60 Aligned_cols=105 Identities=8% Similarity=0.016 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCC----HHHH
Q 006630 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG--CELN----VYAW 528 (638)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~p~----~~~~ 528 (638)
.+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|++.++++++.. ..++ ..+|
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~---p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD---PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 55566677777777777777777777655 3455666677777777777777777777776541 1111 2356
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006630 529 TIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFA 564 (638)
Q Consensus 529 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 564 (638)
..+..++...|++++|++.|++.++. .||+.+..
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 66777788888888888888887754 56665443
No 163
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.35 E-value=3.9e-06 Score=69.66 Aligned_cols=100 Identities=13% Similarity=0.039 Sum_probs=73.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHH
Q 006630 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNV---YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ----PDTFAKLM 567 (638)
Q Consensus 495 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~t~~~ll 567 (638)
.+...+...|++++|...|+.+++.... +. ..+..+..++...|++++|+..|+++++. .|+ ...+..+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHHH
Confidence 3455667788888888888887775221 22 46677778888888888888888888764 343 45677778
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 568 RGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 568 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
.++...|++++|...++++++..|+++...
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 113 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAAR 113 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHH
Confidence 888888888888888888888888776553
No 164
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.34 E-value=1.4e-05 Score=69.76 Aligned_cols=97 Identities=10% Similarity=-0.002 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006630 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532 (638)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 532 (638)
...|..+...+...|++++|+..|++.++.. +.+...+..+..++...|++++|+..|+++++... .+...|..+.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg 86 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA---PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 4566666777777777777777777777665 34566677777777777777777777777776532 2466677777
Q ss_pred HHHHccCCHHHHHHHHHHHHh
Q 006630 533 HSLFSNGHVKEACSYCLDMMD 553 (638)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m~~ 553 (638)
.+|...|++++|+..|++.++
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 777777777777777777765
No 165
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.33 E-value=1.9e-06 Score=70.90 Aligned_cols=93 Identities=8% Similarity=-0.074 Sum_probs=80.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhh
Q 006630 527 AWTIWIHSLFSNGHVKEACSYCLDMMDADVMP-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYK 601 (638)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~ 601 (638)
.+..+...+.+.|++++|+..|++.++. .| +...|..+..++...|++++|+..++++++++|+++..+ .+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4566778899999999999999999875 45 677888999999999999999999999999999998875 6899
Q ss_pred hhhhhhhHHHHHhhhhhhhh
Q 006630 602 RRGERDLKEKAKKQVDGRKR 621 (638)
Q Consensus 602 ~~g~~~~A~~~~~~~~~~~~ 621 (638)
..|++++|.+.+++..+..+
T Consensus 97 ~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHHC---
T ss_pred HcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999766544
No 166
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.31 E-value=2.4e-05 Score=63.19 Aligned_cols=93 Identities=10% Similarity=-0.010 Sum_probs=39.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006630 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM 291 (638)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 291 (638)
+..+...+...|++++|...|+......|.+...|..+...+...|++++|...+++..+.. +.+...+..+..++...
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHH
Confidence 33344444444444444444444443333344444444444444444444444444444332 12233344444444444
Q ss_pred CCHhHHHHHHHHHH
Q 006630 292 GKMTDAFELLKEMR 305 (638)
Q Consensus 292 g~~~~a~~~~~~~~ 305 (638)
|++++|.+.++...
T Consensus 86 ~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 86 NRFEEAKRTYEEGL 99 (118)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 44444444444443
No 167
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.31 E-value=6e-06 Score=70.11 Aligned_cols=97 Identities=13% Similarity=-0.086 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006630 210 FVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA 289 (638)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 289 (638)
..+..+...+.+.|++++|...|+......|.+...|..+..+|.+.|++++|...|++..... +.+...+..+..++.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 4445555566666666666666666665556666666666666666666666666666666553 334455556666666
Q ss_pred HcCCHhHHHHHHHHHHHc
Q 006630 290 QMGKMTDAFELLKEMRRK 307 (638)
Q Consensus 290 ~~g~~~~a~~~~~~~~~~ 307 (638)
..|++++|.+.|+...+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666665543
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=3.1e-05 Score=79.49 Aligned_cols=189 Identities=9% Similarity=-0.041 Sum_probs=120.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcH
Q 006630 427 LACKLGELKEAVNVWNEMEAASLSPG----------------TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490 (638)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~~~~~p~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~ 490 (638)
.+.+.|++++|++.|..+.+..-... ..++..++..|...|++++|.+++.++...... .++.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~-~~~~ 91 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQ-FAKS 91 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHT-SCHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-ccch
Confidence 34555666666666666654321100 123566777888888888888888776653110 1222
Q ss_pred H----HHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHh--CCC--C
Q 006630 491 G----TLKALLNSLLRAQKVEMAKDVWSCIVTK----GCELN-VYAWTIWIHSLFSNGHVKEACSYCLDMMD--ADV--M 557 (638)
Q Consensus 491 ~----~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~--~ 557 (638)
. +...+...+...|+++.|..+++..... +..+. ...+..++..|...|++++|..+++++.. .+. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1 1222222333567888888888777543 22222 45677788888888999999988888754 221 2
Q ss_pred CC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc------c-----chhhhhhhhhhHHHHHhhh
Q 006630 558 PQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT------F-----KMYKRRGERDLKEKAKKQV 616 (638)
Q Consensus 558 p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~------~-----~~y~~~g~~~~A~~~~~~~ 616 (638)
|. ..++..++..|...|++++|..+++++++..+..+.. + .++...|++++|.+.|.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 22 3457788888888899999999999998887765432 1 4667778888888877664
No 169
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.29 E-value=5e-06 Score=72.43 Aligned_cols=102 Identities=12% Similarity=0.099 Sum_probs=76.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--------C---------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006630 493 LKALLNSLLRAQKVEMAKDVWSCIVTK--------G---------CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555 (638)
Q Consensus 493 ~~~ll~~~~~~g~~~~A~~~~~~~~~~--------~---------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 555 (638)
+......+.+.|++++|...|.+++.. . .+.+...|..+..+|.+.|++++|+..+++.++..
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 344444555555555555555555442 0 01134678888999999999999999999998753
Q ss_pred CCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccc
Q 006630 556 VMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595 (638)
Q Consensus 556 ~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 595 (638)
..+...|..+..++...|+++.|...++++++++|+++.
T Consensus 94 -p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~ 132 (162)
T 3rkv_A 94 -ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAAS 132 (162)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHH
T ss_pred -CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHH
Confidence 335778999999999999999999999999999999873
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.28 E-value=1e-05 Score=67.00 Aligned_cols=107 Identities=9% Similarity=0.070 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCC----HHHH
Q 006630 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC--ELN----VYAW 528 (638)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~ 528 (638)
.|..+...+...|++++|+.+|++..... +.+...+..+...+...|++++|...++++..... .++ ...|
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD---PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 44555555555566666666666555543 23444555555555556666666666555554311 111 4445
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006630 529 TIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKL 566 (638)
Q Consensus 529 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 566 (638)
..+..++...|++++|...|+++.+. .|+...+..+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 55555666666666666666665543 3444443333
No 171
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.26 E-value=1.1e-05 Score=72.98 Aligned_cols=120 Identities=12% Similarity=-0.105 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHhchhCC
Q 006630 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLIT--------------TEVFVILMRRFASARMVKKAIEVLDEMPKYG 204 (638)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~--------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 204 (638)
..+..+...+.+.|++++|+..|++.....|..++ ...+..+..++...|++++|+..++...+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 35666677777888888888888887776544221 1334444444444444444444444444332
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCH
Q 006630 205 CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKL 259 (638)
Q Consensus 205 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 259 (638)
+.+..++..+..+|...|++++|...|++.....|.+...+..+...+...++.
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHH
Confidence 223344444444444444444444444444333333444444444444433333
No 172
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.26 E-value=2.3e-05 Score=83.07 Aligned_cols=170 Identities=9% Similarity=0.041 Sum_probs=137.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHH
Q 006630 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC----------LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502 (638)
Q Consensus 433 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~ 502 (638)
..++|++.++++.+.+ +-+...|+.--..+...|+ +++++++++.+.+.. +-++.+|..-...+.+
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~---pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN---PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHH
Confidence 4467899999998876 6667788877777777777 899999999999887 4678888888888888
Q ss_pred cC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhh------
Q 006630 503 AQ--KVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG-HVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL------ 573 (638)
Q Consensus 503 ~g--~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~------ 573 (638)
.+ +++++.+.++++++.... +..+|+.-..++.+.| .+++++++++++++.. .-|...|......+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccc
Confidence 88 679999999999988543 7888988888888888 8999999999988653 23566788877777664
Q ss_pred --------cCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhh
Q 006630 574 --------YNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDL 608 (638)
Q Consensus 574 --------g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~ 608 (638)
+.++++.+++.++++.+|++..++ .++.+.|++++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 668999999999999999999886 36666666544
No 173
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.25 E-value=1.3e-05 Score=67.20 Aligned_cols=98 Identities=11% Similarity=-0.033 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHH
Q 006630 136 HSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCL 215 (638)
Q Consensus 136 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l 215 (638)
.+...|..+...+...|++++|...|++.....|. +...+..+...+...|++++|+..++...+.. +.+...+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL--VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 34555666666666666666666666666655543 45555555556666666666666666555543 3344555555
Q ss_pred HHHHHhCCCHHHHHHHHHHHh
Q 006630 216 LDALCKNSSVKEAAKLFDEMR 236 (638)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~~~ 236 (638)
..+|...|++++|...|++..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHH
Confidence 555656666666665555543
No 174
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.24 E-value=7.5e-06 Score=84.76 Aligned_cols=154 Identities=10% Similarity=0.059 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006630 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511 (638)
Q Consensus 432 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 511 (638)
+++++|...|+...+.. +-....|..+...|.+.|++++|+..|++.+..... .+.. .-+...
T Consensus 248 ~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~-~~~~--------------~~~~~~- 310 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEM-EYGL--------------SEKESK- 310 (457)
T ss_dssp EEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT-CCSC--------------CHHHHH-
T ss_pred hhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc-cccC--------------ChHHHH-
Confidence 34445554444332221 223456777888888888888888888888775421 1110 000000
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 006630 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAA 591 (638)
Q Consensus 512 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 591 (638)
+... -....|..+..+|.+.|++++|+..|+++++.. ..+...|..+..+|...|++++|+..++++++++|
T Consensus 311 ---~~~~----~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 311 ---ASES----FLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp ---HHHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred ---HHHH----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 0000 012344555555555555555555555555431 12344455555555555555555555555555555
Q ss_pred hccccc----chhhhhhhhhhHH
Q 006630 592 ERQITF----KMYKRRGERDLKE 610 (638)
Q Consensus 592 ~~~~~~----~~y~~~g~~~~A~ 610 (638)
++..++ .++.+.|++++|.
T Consensus 383 ~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 383 QNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 555443 3445555555544
No 175
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.23 E-value=2.1e-06 Score=85.08 Aligned_cols=150 Identities=11% Similarity=0.005 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006630 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532 (638)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 532 (638)
...+..+...+.+.|++++|+..|++.+... |+... +...|+.+++...+ ....|..+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~----p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla 237 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM----GDDFM-------FQLYGKYQDMALAV----------KNPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS----CHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh----ccchh-------hhhcccHHHHHHHH----------HHHHHHHHH
Confidence 4566677777788888888888888887764 54332 12223333333221 113677888
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccccch-----hhhhhhhh
Q 006630 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKM-----YKRRGERD 607 (638)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~-----y~~~g~~~ 607 (638)
.+|.+.|++++|+..+++.++.. ..+...|..+..+|...|++++|+..++++++++|+++.+... ....+..+
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999888652 2356778888889999999999999999999999998877532 23446677
Q ss_pred hHHHHHhhhhhhhhhhh
Q 006630 608 LKEKAKKQVDGRKRRAR 624 (638)
Q Consensus 608 ~A~~~~~~~~~~~~~~~ 624 (638)
++.+.|+++-+..+...
T Consensus 317 ~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 317 KQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHHhhCCCCCCC
Confidence 77788887766655444
No 176
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.23 E-value=1.2e-05 Score=64.36 Aligned_cols=97 Identities=12% Similarity=0.073 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCC--CHHHHHHHH
Q 006630 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEP--DEFVFGCLL 216 (638)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~--~~~~~~~li 216 (638)
.+|..+...+.+.|++++|...|++.....|. +...+..+...+...|++++|++.|++..+.. +. +..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE--ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 34555566666666666666666666655543 44555555666666666666666666655542 22 355555566
Q ss_pred HHHHhC-CCHHHHHHHHHHHhcc
Q 006630 217 DALCKN-SSVKEAAKLFDEMRER 238 (638)
Q Consensus 217 ~~~~~~-g~~~~A~~~~~~~~~~ 238 (638)
.++.+. |++++|.+.|+.....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 666666 6666666666655544
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.22 E-value=1.2e-05 Score=69.47 Aligned_cols=138 Identities=12% Similarity=-0.011 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HH
Q 006630 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS-APQ--YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC-ELN----VY 526 (638)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~ 526 (638)
++..+...+...|++++|+..+++..+..... .+. ..++..+...+...|++++|.+.++++.+... .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 55666666677777777777777665432100 011 13555666677777777777777777655310 011 34
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 527 AWTIWIHSLFSNGHVKEACSYCLDMMDA----DVMP-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
.+..+..++...|++++|...+++.++. +..+ ....+..+...+...|++++|.+.+++++++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 5666677777778888888777776542 1111 1334666777777778888888888877776543
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.22 E-value=1.9e-06 Score=70.46 Aligned_cols=94 Identities=9% Similarity=-0.071 Sum_probs=72.3
Q ss_pred HcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHH
Q 006630 502 RAQKVEMAKDVWSCIVTKG--CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIA 579 (638)
Q Consensus 502 ~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A 579 (638)
..|++++|+..|+++++.+ .+.+...|..+..+|...|++++|+..|++.++.. +-+...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 3578888888888888753 12245678888889999999999999999988752 22467788888899999999999
Q ss_pred HHHHHHHHHHHHhcccc
Q 006630 580 AEITEKVRKMAAERQIT 596 (638)
Q Consensus 580 ~~~~~~~~~~~p~~~~~ 596 (638)
...++++++..|+++..
T Consensus 81 ~~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 81 VELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHhCCCcHHH
Confidence 99999999999988765
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.21 E-value=4.1e-06 Score=87.15 Aligned_cols=114 Identities=11% Similarity=-0.006 Sum_probs=71.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHH
Q 006630 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQI 578 (638)
Q Consensus 499 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 578 (638)
.+.+.|++++|.+.|+++++.. +.+...|..+..+|.+.|++++|+..+++.++.. ..+...|..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3455677777777777776652 2246667777777777777777777777776542 2245566677777777777777
Q ss_pred HHHHHHHHHHHHHhccccc----ch--hhhhhhhhhHHHHHh
Q 006630 579 AAEITEKVRKMAAERQITF----KM--YKRRGERDLKEKAKK 614 (638)
Q Consensus 579 A~~~~~~~~~~~p~~~~~~----~~--y~~~g~~~~A~~~~~ 614 (638)
|++.++++++++|+++..+ .+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777777777766653 12 556677777777766
No 180
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.21 E-value=1.3e-05 Score=64.11 Aligned_cols=94 Identities=11% Similarity=-0.044 Sum_probs=43.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHH
Q 006630 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEP--DIVVYNNLLSGYA 289 (638)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~ 289 (638)
+..+...+...|++++|...|++..+..+.+...|..+...+...|++++|.+.|++..+.. +. +...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHH
Confidence 33444444444444444444444444334444444444444444444555544444444432 11 2344444444444
Q ss_pred Hc-CCHhHHHHHHHHHHH
Q 006630 290 QM-GKMTDAFELLKEMRR 306 (638)
Q Consensus 290 ~~-g~~~~a~~~~~~~~~ 306 (638)
.. |++++|.+.++...+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TCSSCSHHHHHHHHHHGG
T ss_pred HHhCCHHHHHHHHHHHhh
Confidence 44 444444444444443
No 181
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=3e-05 Score=65.83 Aligned_cols=114 Identities=12% Similarity=-0.068 Sum_probs=72.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHH
Q 006630 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLIT---TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFV 211 (638)
Q Consensus 135 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~ 211 (638)
+.+...+..+...+.+.|++++|...|++.....|. + ...+..+...+...|++++|+..++...+.. +.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT--PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc--chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 345667777777777888888888888777766542 2 4556666666666777777777776665542 334556
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 006630 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLY 251 (638)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 251 (638)
+..+..+|...|++++|...|++.....+.+...+..+..
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 6666666666666666666666665554545555444433
No 182
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.20 E-value=1.3e-05 Score=66.29 Aligned_cols=111 Identities=9% Similarity=0.044 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc----HHHHH
Q 006630 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ----YGTLK 494 (638)
Q Consensus 419 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~----~~~~~ 494 (638)
..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|+.+++++........++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345556666667777777777777766654 4456666677777777777777777777766643110111 45666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006630 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532 (638)
Q Consensus 495 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 532 (638)
.+..++...|++++|.+.|+++.+. .|+...+..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~ 119 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 6667777777777777777777665 34544444443
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.19 E-value=9.3e-06 Score=81.33 Aligned_cols=136 Identities=13% Similarity=0.086 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006630 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532 (638)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 532 (638)
...|..+...+.+.|++++|+..|++.++.- +... .....+ ...+. ...+...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~----~~~~----------~~~~~~-------~~~~~-~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV----EGSR----------AAAEDA-------DGAKL-QPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----HHHH----------HHSCHH-------HHGGG-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh----hcCc----------cccChH-------HHHHH-HHHHHHHHHHHH
Confidence 4556677777777788888877777776531 1100 000111 11111 012456788888
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhh
Q 006630 533 HSLFSNGHVKEACSYCLDMMDADVMP-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGERD 607 (638)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~ 607 (638)
.+|.+.|++++|+..++++++. .| +...|..+..++...|++++|...++++++++|+++.+. .++...|+.+
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~ 358 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK 358 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999998865 44 567788888999999999999999999999999887764 3555666666
Q ss_pred hHHHH
Q 006630 608 LKEKA 612 (638)
Q Consensus 608 ~A~~~ 612 (638)
++.+.
T Consensus 359 ~a~k~ 363 (370)
T 1ihg_A 359 DKEKA 363 (370)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 66543
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.16 E-value=1.4e-05 Score=69.00 Aligned_cols=131 Identities=13% Similarity=0.003 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCC----H
Q 006630 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGC-ELN----VYAWTIWIHSLFSNGHVKEACSYCLDMMDAD-VMPQ----P 560 (638)
Q Consensus 491 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~----~ 560 (638)
.++..+...+...|++++|...++++.+... .++ ...+..+...+...|++++|...+++.++.. -.++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 4667778888999999999999999876511 112 2467888999999999999999999986521 0122 4
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc------c----chhhhhhhhhhHHHHHhhhhhhhh
Q 006630 561 DTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT------F----KMYKRRGERDLKEKAKKQVDGRKR 621 (638)
Q Consensus 561 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~------~----~~y~~~g~~~~A~~~~~~~~~~~~ 621 (638)
..+..+...+...|++++|.+.++++++..++.... + .+|...|++++|.+.+++..+..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 457788889999999999999999999987654321 1 588999999999999998665443
No 185
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.12 E-value=8.6e-06 Score=69.19 Aligned_cols=93 Identities=16% Similarity=0.067 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-------------HHHHHHHHHHHHhhcCHHHHHHHHHHHHHH---
Q 006630 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-------------PDTFAKLMRGLKKLYNRQIAAEITEKVRKM--- 589 (638)
Q Consensus 526 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-------------~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~--- 589 (638)
..+......+...|++++|+..|++.++. .|+ ...|..+..++.+.|++++|+..+++++++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 34566777889999999999999999874 343 238999999999999999999999999999
Q ss_pred ----HHhccccc--------chhhhhhhhhhHHHHHhhhhhhh
Q 006630 590 ----AAERQITF--------KMYKRRGERDLKEKAKKQVDGRK 620 (638)
Q Consensus 590 ----~p~~~~~~--------~~y~~~g~~~~A~~~~~~~~~~~ 620 (638)
+|+++.++ ..+...|++++|.+.|++..+..
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99998776 58899999999999999965554
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.12 E-value=6.9e-06 Score=81.30 Aligned_cols=154 Identities=14% Similarity=-0.011 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHH
Q 006630 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497 (638)
Q Consensus 418 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll 497 (638)
...+..+...+.+.|++++|...|++..... |+... +...|+..++...+. ...+..+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~------------~~~~~nla 237 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK------------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH------------THHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH------------HHHHHHHH
Confidence 4567777788889999999999999988753 44331 233444455443321 12667788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHH-HhhcC
Q 006630 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPD-TFAKLMRGL-KKLYN 575 (638)
Q Consensus 498 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~-~~~g~ 575 (638)
.++.+.|++++|+..++++++.. +.+...|..+..+|...|++++|+..|+++++. .|+.. .+..+.... ...+.
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~ 314 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKAL 314 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHH
Confidence 88999999999999999998873 236788999999999999999999999998754 56543 344444442 34467
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 006630 576 RQIAAEITEKVRKMAAERQI 595 (638)
Q Consensus 576 ~~~A~~~~~~~~~~~p~~~~ 595 (638)
.+.+...++++++..|+++.
T Consensus 315 ~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 315 YQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHhhCCCCCCCC
Confidence 88899999999999998764
No 187
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.12 E-value=7.8e-05 Score=61.57 Aligned_cols=104 Identities=11% Similarity=-0.007 Sum_probs=67.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCC---HHHHHHHHHH
Q 006630 143 ALIKSLSKMRKFGAVWALMEEMRKEKPQLIT-TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPD---EFVFGCLLDA 218 (638)
Q Consensus 143 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~ 218 (638)
.+...+.+.|++++|...|++.....|..+. ...+..+..++...|++++|+..|+.+.+.. +.+ ..++..+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 4456667778888888888777776654221 1456666677777777777777777776553 222 4556667777
Q ss_pred HHhCCCHHHHHHHHHHHhccCCCCHHHHH
Q 006630 219 LCKNSSVKEAAKLFDEMRERFKPSLRHFT 247 (638)
Q Consensus 219 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 247 (638)
|.+.|++++|...|+.+....|.+.....
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 77777777777777777665555544433
No 188
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.11 E-value=8.5e-05 Score=76.21 Aligned_cols=160 Identities=8% Similarity=0.005 Sum_probs=78.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHhchhC-CCCCC
Q 006630 145 IKSLSKMRKFGAVWALMEEMRKEKPQLIT---------------TEVFVILMRRFASARMVKKAIEVLDEMPKY-GCEPD 208 (638)
Q Consensus 145 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~---------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~~~ 208 (638)
.+.+.+.|++++|++.|..+.+..+...+ ...+..+...|...|++++|.+.+..+.+. +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45677889999999999998877654322 123455666666666666666666655432 10111
Q ss_pred H----HHHHHHHHHHHhCCCHHHHHHHHHHHhcc------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--
Q 006630 209 E----FVFGCLLDALCKNSSVKEAAKLFDEMRER------FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA--GF-- 274 (638)
Q Consensus 209 ~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-- 274 (638)
. .+.+.+-..+...|+.+.|..+++..... ...-..++..+...|...|++++|..++.++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 11122222223345555555555543221 1111234444555555555555555555544321 00
Q ss_pred CC-CHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 006630 275 EP-DIVVYNNLLSGYAQMGKMTDAFELLKEM 304 (638)
Q Consensus 275 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 304 (638)
.+ ...++..++..|...|++++|..++++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 201 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAA 201 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 00 1223444444444444444444444443
No 189
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.11 E-value=1.9e-05 Score=82.15 Aligned_cols=117 Identities=9% Similarity=-0.012 Sum_probs=55.6
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHH
Q 006630 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVE 507 (638)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 507 (638)
|.+.|++++|++.|++..+.. +.+...|..+...|.+.|++++|++.+++.++.. +.+..++..+..++...|+++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD---KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC---TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHH
Confidence 334455555555555555443 3334555555555555555555555555555543 233445555555555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH--HHccCCHHHHHHHHH
Q 006630 508 MAKDVWSCIVTKGCELNVYAWTIWIHS--LFSNGHVKEACSYCL 549 (638)
Q Consensus 508 ~A~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 549 (638)
+|.+.|+++++.... +...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555555555544211 22233333333 445555555555554
No 190
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.02 E-value=2.5e-05 Score=66.22 Aligned_cols=90 Identities=12% Similarity=0.101 Sum_probs=64.6
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC----------HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 006630 502 RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH----------VKEACSYCLDMMDADVMP-QPDTFAKLMRGL 570 (638)
Q Consensus 502 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~ 570 (638)
+.+.+++|++.++..++... .+...|..+..++...|+ +++|+..|++.++. .| +...|..+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHH
Confidence 44556666666666666532 256666666666666554 45888888888765 45 456788888888
Q ss_pred Hhh-----------cCHHHHHHHHHHHHHHHHhcc
Q 006630 571 KKL-----------YNRQIAAEITEKVRKMAAERQ 594 (638)
Q Consensus 571 ~~~-----------g~~~~A~~~~~~~~~~~p~~~ 594 (638)
... |++++|++.++++++++|+++
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 776 489999999999999999875
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.01 E-value=6e-05 Score=77.85 Aligned_cols=94 Identities=13% Similarity=-0.044 Sum_probs=49.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh-----CC-CCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHH-----HHhcc
Q 006630 527 AWTIWIHSLFSNGHVKEACSYCLDMMD-----AD-VMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKM-----AAERQ 594 (638)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~-~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~p~~~ 594 (638)
+++.|..+|...|++++|..++++.++ .| -.|+ ..+++.|...|..+|++++|+.+++++++. +|++|
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 445555555555555555555555432 11 1222 223555666666666666666666666543 34444
Q ss_pred ccc-------chhhhhhhhhhHHHHHhhhhhhh
Q 006630 595 ITF-------KMYKRRGERDLKEKAKKQVDGRK 620 (638)
Q Consensus 595 ~~~-------~~y~~~g~~~~A~~~~~~~~~~~ 620 (638)
... ..+..+|++++|+.+|+++.+.-
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 34555666666666666655444
No 192
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.99 E-value=8.3e-05 Score=76.86 Aligned_cols=138 Identities=7% Similarity=-0.152 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 006630 138 YDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217 (638)
Q Consensus 138 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 217 (638)
...|..+...|.+.|++++|+..|++.....|..... .-+...+ .. .....+|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~--------------~~~~~~~----~~----~~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL--------------SEKESKA----SE----SFLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC--------------CHHHHHH----HH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccC--------------ChHHHHH----HH----HHHHHHHHHHHH
Confidence 3456667777777777777777777776655442210 0000000 00 001345555566
Q ss_pred HHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHH
Q 006630 218 ALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297 (638)
Q Consensus 218 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 297 (638)
+|.+.|++++|+..|++.....+.+...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.++.+++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666555555566666666666666666666666666665543 22344555555555555555554
Q ss_pred H
Q 006630 298 F 298 (638)
Q Consensus 298 ~ 298 (638)
.
T Consensus 405 ~ 405 (457)
T 1kt0_A 405 D 405 (457)
T ss_dssp H
T ss_pred H
Confidence 4
No 193
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.97 E-value=9.1e-05 Score=64.23 Aligned_cols=103 Identities=13% Similarity=0.053 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCC-------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006630 455 SFVVMVHGFLGQGCLIEACEYFKEMVGR--------GLL-------SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519 (638)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~-------~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 519 (638)
.+......+.+.|++++|+..|.+.+.. ... .+.+...+..+..++.+.|++++|+..++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4444555555555666655555555543 000 0123356777777888888888888888888876
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 006630 520 GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560 (638)
Q Consensus 520 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 560 (638)
. +.+...|..+..+|...|++++|+..|++.++. .|+.
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 3 225677888888888888888888888888764 4553
No 194
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.92 E-value=9.2e-05 Score=74.05 Aligned_cols=138 Identities=12% Similarity=-0.013 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 006630 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDA 218 (638)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 218 (638)
..|..+...+.+.|++++|+..|++.....+.. ......+ ...+.. +.+..+|..+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~-------------~~~~~~~-------~~~~~~-~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS-------------RAAAEDA-------DGAKLQ-PVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-------------HHHSCHH-------HHGGGH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC-------------ccccChH-------HHHHHH-HHHHHHHHHHHHH
Confidence 346777788888888888888888776521100 0000000 000010 1234556666666
Q ss_pred HHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 006630 219 LCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298 (638)
Q Consensus 219 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 298 (638)
|.+.|++++|+..+++..+..+.+...|..+..+|...|++++|++.|++..+.. +.+...+..+...+...++.+++.
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666665555566666666666666666666666666666543 224555555555555555555554
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.90 E-value=0.00021 Score=57.62 Aligned_cols=86 Identities=14% Similarity=0.021 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 006630 508 MAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587 (638)
Q Consensus 508 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 587 (638)
.|...|+++++.. +.+...|..+..+|...|++++|+..|++.++.. ..+...|..+..++...|++++|+..+++++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4667777777653 2367788888888999999999999998888652 2346678888888999999999999999999
Q ss_pred HHHHhccc
Q 006630 588 KMAAERQI 595 (638)
Q Consensus 588 ~~~p~~~~ 595 (638)
++.|++..
T Consensus 81 ~~~~~~~~ 88 (115)
T 2kat_A 81 AAAQSRGD 88 (115)
T ss_dssp HHHHHHTC
T ss_pred Hhcccccc
Confidence 99887543
No 196
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.88 E-value=2.8e-05 Score=63.24 Aligned_cols=84 Identities=13% Similarity=0.035 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHH
Q 006630 432 GELKEAVNVWNEMEAAS--LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509 (638)
Q Consensus 432 g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A 509 (638)
|++++|+..|++..+.+ -+.+...|..+...|...|++++|+..|++.++.. +.+..++..+..++...|++++|
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF---PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCchHHHHHHHHHHHHcCCHHHH
Confidence 44445555555544432 01222344444455555555555555555554443 22334444444445555555555
Q ss_pred HHHHHHHHH
Q 006630 510 KDVWSCIVT 518 (638)
Q Consensus 510 ~~~~~~~~~ 518 (638)
...|++.+.
T Consensus 81 ~~~~~~al~ 89 (117)
T 3k9i_A 81 VELLLKIIA 89 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554444
No 197
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.87 E-value=0.0008 Score=71.19 Aligned_cols=134 Identities=8% Similarity=-0.014 Sum_probs=89.7
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhC
Q 006630 153 KFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM----------VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN 222 (638)
Q Consensus 153 ~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~----------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 222 (638)
..++|++.++.+...+|. +..+|+.--..+...++ ++++++.++.+.+.. +-+..+|+.-...+.+.
T Consensus 44 ~~eeal~~~~~~l~~nP~--~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILGANPD--FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHCch--hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 345778888888888776 56667665555555555 677777777776654 45566777666666677
Q ss_pred C--CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006630 223 S--SVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG-KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290 (638)
Q Consensus 223 g--~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 290 (638)
| +++++++.++++.+..+.|..+|+.-...+.+.| .++++++.++++.+.. +-|...|+.....+.+
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHh
Confidence 7 5577777777777666667777777766666666 6677777777776654 3455666665555544
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.86 E-value=6.5e-06 Score=66.13 Aligned_cols=90 Identities=14% Similarity=0.079 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc------cccc-
Q 006630 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAER------QITF- 597 (638)
Q Consensus 525 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~- 597 (638)
...|..+...+...|++++|+..|++.++.. ..+...|..+..++...|++++|+..++++++++|++ ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4455556666666666666666666665531 2245556666666666666666666666666666665 2221
Q ss_pred ---chhhhhhhhhhHHHHHhh
Q 006630 598 ---KMYKRRGERDLKEKAKKQ 615 (638)
Q Consensus 598 ---~~y~~~g~~~~A~~~~~~ 615 (638)
.++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 344455555555544444
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.69 E-value=0.00034 Score=72.26 Aligned_cols=132 Identities=15% Similarity=0.035 Sum_probs=86.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhC--CCCC--CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-CCC-HHHHH
Q 006630 462 GFLGQGCLIEACEYFKEMVGR--GLLS--AP-QYGTLKALLNSLLRAQKVEMAKDVWSCIVTK-----GC-ELN-VYAWT 529 (638)
Q Consensus 462 ~~~~~g~~~~A~~~~~~m~~~--~~~~--~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~-~~~~~ 529 (638)
.+..+|++++|+.++++.++. .+.. .| ...+++.|..+|...|++++|..+++++++. |. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345667777777777766542 1110 12 2446777777888888888888888776643 21 222 34578
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh-----CCC-CCCH-HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc
Q 006630 530 IWIHSLFSNGHVKEACSYCLDMMD-----ADV-MPQP-DTFAKLMRGLKKLYNRQIAAEITEKVRKMAAER 593 (638)
Q Consensus 530 ~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~p~~-~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 593 (638)
.|...|...|++++|..++++.++ .|- .|+. .+...+..++..++.++.|+..+.++.+..-++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~ 468 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNN 468 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888888888888888888887754 231 2222 234555566778889999999999987755333
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.69 E-value=0.00072 Score=56.68 Aligned_cols=110 Identities=12% Similarity=-0.024 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHH
Q 006630 468 CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS----NGHVKE 543 (638)
Q Consensus 468 ~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 543 (638)
++++|+++|++..+.+ .|... +...|...+.+++|.+.|++..+.| +...+..+...|.. .+++++
T Consensus 10 d~~~A~~~~~~aa~~g---~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 10 DLKKAIQYYVKACELN---EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred CHHHHHHHHHHHHcCC---CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 4555666666665555 23332 3344444555555666666665542 44555555555555 556666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----hcCHHHHHHHHHHHHHHH
Q 006630 544 ACSYCLDMMDADVMPQPDTFAKLMRGLKK----LYNRQIAAEITEKVRKMA 590 (638)
Q Consensus 544 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~g~~~~A~~~~~~~~~~~ 590 (638)
|+.+|++..+.| ++..+..|...|.. .+|+++|.++++++.+.+
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 666666665543 34445555555555 556666666666665543
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.66 E-value=5.4e-05 Score=60.53 Aligned_cols=95 Identities=15% Similarity=0.071 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCC-------H
Q 006630 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPD-------E 209 (638)
Q Consensus 137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~-------~ 209 (638)
+...|..+...+.+.|++++|+..|++.....|. +...+..+..++...|++++|+..+++..+.. |+ .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~ 78 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ--NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHH
Confidence 3456777777888888888888888888777654 56677777777888888888888888777653 33 4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHH
Q 006630 210 FVFGCLLDALCKNSSVKEAAKLFDEM 235 (638)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~~ 235 (638)
..+..+..++...|+.+.|...|+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 44555555555555555555444433
No 202
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.66 E-value=0.00013 Score=57.01 Aligned_cols=82 Identities=13% Similarity=0.080 Sum_probs=49.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCC-CHH-HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccccchhhhhhhhhhH
Q 006630 532 IHSLFSNGHVKEACSYCLDMMDADVMP-QPD-TFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLK 609 (638)
Q Consensus 532 i~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~-t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~y~~~g~~~~A 609 (638)
...+...|++++|+..|+++++. .| +.. .|..+..++...|++++|.+.++++++++|+++..+. .+.+.++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~----~~~~~~a 80 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA----RKMVMDI 80 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH----HHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH----HHHHHHH
Confidence 44555666677777766666653 23 344 5666666666667777777777777777666655431 1566666
Q ss_pred HHHHhhhhhh
Q 006630 610 EKAKKQVDGR 619 (638)
Q Consensus 610 ~~~~~~~~~~ 619 (638)
...+++....
T Consensus 81 ~~~~~~~~~~ 90 (99)
T 2kc7_A 81 LNFYNKDMYN 90 (99)
T ss_dssp HHHHCCTTHH
T ss_pred HHHHHHHhcc
Confidence 6666665443
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.60 E-value=0.00032 Score=54.96 Aligned_cols=72 Identities=11% Similarity=0.112 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 524 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
+...|..+..+|...|++++|+..|+++++.. ..+...|..+..+|...|++++|++.+++++++.|++...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 77 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ 77 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCch
Confidence 56677777888888888888888888877642 2235567778888888888888888888888887765443
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.58 E-value=0.00017 Score=61.11 Aligned_cols=92 Identities=10% Similarity=-0.027 Sum_probs=56.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006630 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK----------VEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535 (638)
Q Consensus 466 ~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 535 (638)
.+.+++|++.+++.++.. +.+...|..+..++...++ +++|+..|+++++.... +...|..+..+|
T Consensus 15 ~~~feeA~~~~~~Ai~l~---P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN---PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 344555555555555554 2344455555555554443 45777777777765322 456677777777
Q ss_pred Hcc-----------CCHHHHHHHHHHHHhCCCCCCHHHH
Q 006630 536 FSN-----------GHVKEACSYCLDMMDADVMPQPDTF 563 (638)
Q Consensus 536 ~~~-----------g~~~~A~~~~~~m~~~~~~p~~~t~ 563 (638)
... |++++|++.|+++++. .|+...|
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y 127 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHY 127 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHH
Confidence 665 4889999999988865 6765444
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.57 E-value=0.00035 Score=56.29 Aligned_cols=76 Identities=11% Similarity=0.011 Sum_probs=32.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006630 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517 (638)
Q Consensus 438 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 517 (638)
+..|++..+.+ +.+...|..+...|...|++++|+..|++.+... +.+...+..+..++...|++++|...|++++
T Consensus 5 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 5 TERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD---PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444443332 2333444444444444444444444444444433 1223344444444444444444444444443
No 206
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.51 E-value=0.0011 Score=55.47 Aligned_cols=109 Identities=8% Similarity=0.073 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhhcCHHHHH
Q 006630 506 VEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG---HVKEACSYCLDMMDADVMP--QPDTFAKLMRGLKKLYNRQIAA 580 (638)
Q Consensus 506 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~g~~~~A~ 580 (638)
+..+++-|.+....+. ++..+.-.+..++++.. +.++++.++++..+.. .| +...+..+.-++.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4556677777766554 68888888899999988 6679999999998753 35 3455667777889999999999
Q ss_pred HHHHHHHHHHHhcccccchhhhhhhhhhHHHHHhhhhhhhhhhhhhhcc
Q 006630 581 EITEKVRKMAAERQITFKMYKRRGERDLKEKAKKQVDGRKRRARQRRWG 629 (638)
Q Consensus 581 ~~~~~~~~~~p~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 629 (638)
++++.+++.+|+|. +|..+.+.++++.++..-.+..
T Consensus 92 ~y~~~lL~ieP~n~-------------QA~~Lk~~ie~~~~kdgl~G~~ 127 (152)
T 1pc2_A 92 KYVRGLLQTEPQNN-------------QAKELERLIDKAMKKDGLVGMA 127 (152)
T ss_dssp HHHHHHHHHCTTCH-------------HHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHhcCCCCH-------------HHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999754 4677777788777776666643
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.49 E-value=0.0028 Score=52.96 Aligned_cols=108 Identities=11% Similarity=-0.018 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHH
Q 006630 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR----MEKMEEANR 334 (638)
Q Consensus 259 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~ 334 (638)
+++|++.|++..+.| .|+.. +...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|.+
T Consensus 11 ~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 11 LKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 444444444444444 22222 3333333344444444444444432 33444444444444 444555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHC
Q 006630 335 AFVEMERSGCEADVVTYTTLISGFCK----SRKIDRCYEILDSMIQR 377 (638)
Q Consensus 335 ~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 377 (638)
.|++..+.| +...+..|...|.. .++.++|+++|++..+.
T Consensus 83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 555544432 34444444444444 44445555554444443
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.46 E-value=0.0013 Score=49.99 Aligned_cols=63 Identities=17% Similarity=0.108 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 210 FVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272 (638)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (638)
..+..+...+...|++++|...|++.....+.+...|..+...|.+.|++++|...|++..+.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344444445555555555555555544444444455555555555555555555555555443
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.36 E-value=0.002 Score=48.82 Aligned_cols=62 Identities=13% Similarity=0.162 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchh
Q 006630 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK 202 (638)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 202 (638)
..|..+...+.+.|++++|...|++.....|. +...+..+...+...|++++|+..|++..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444555555555555555555555444432 334444444444444444444444444443
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.33 E-value=0.00057 Score=53.18 Aligned_cols=89 Identities=11% Similarity=0.036 Sum_probs=68.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhh
Q 006630 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVY-AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPD-TFAKLMRGLKKL 573 (638)
Q Consensus 496 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~ 573 (638)
....+...|++++|...|+++++.. +.+.. .|..+..+|...|++++|+..|++.++. .|+.. .+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~-------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHH--------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHH--------
Confidence 4556778899999999999988763 22556 7888889999999999999999998865 44432 2211
Q ss_pred cCHHHHHHHHHHHHHHHHhccc
Q 006630 574 YNRQIAAEITEKVRKMAAERQI 595 (638)
Q Consensus 574 g~~~~A~~~~~~~~~~~p~~~~ 595 (638)
+.+.++...++++.+.+|+++.
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCSS
T ss_pred HHHHHHHHHHHHHhccCccccc
Confidence 6788889999999999998764
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.30 E-value=0.0013 Score=64.00 Aligned_cols=73 Identities=11% Similarity=-0.062 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 522 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
+.+...|..+...+...|++++|...+++++.. .|+...|..+...+.-.|++++|.+.+++++.++|..+..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChH
Confidence 446778888877777789999999999999876 4888788888888888899999999999999999987654
No 212
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.23 E-value=0.0018 Score=50.62 Aligned_cols=65 Identities=12% Similarity=-0.004 Sum_probs=43.5
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006630 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553 (638)
Q Consensus 488 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 553 (638)
.+...+..+...+...|++++|+..|+++++.... +...|..+..+|...|++++|+..|++.++
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34556666667777777777777777777665322 455677777777777777777777776653
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.05 E-value=0.002 Score=65.33 Aligned_cols=64 Identities=13% Similarity=0.009 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHh-----CC-CCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 006630 526 YAWTIWIHSLFSNGHVKEACSYCLDMMD-----AD-VMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589 (638)
Q Consensus 526 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~-~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 589 (638)
.+++.+..+|...|++++|..++++.++ .| -.|+ ..+++.|...|..+|++++|+.++++++++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 3455555566666666666666555542 12 1233 234667777777777777777777777654
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.03 E-value=0.0048 Score=62.63 Aligned_cols=100 Identities=13% Similarity=-0.008 Sum_probs=56.0
Q ss_pred HHHcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CC-CCCC-HHHHHH
Q 006630 500 LLRAQKVEMAKDVWSCIVTK---GCELN----VYAWTIWIHSLFSNGHVKEACSYCLDMMD-----AD-VMPQ-PDTFAK 565 (638)
Q Consensus 500 ~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~-~~p~-~~t~~~ 565 (638)
+.+.|++++|+.++++.++. -+.|+ ..+++.+..+|...|++++|..+++++++ .| ..|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 34455555666665555433 11111 33456666666666666666666666543 12 1232 234667
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHH-----HHhcccccch
Q 006630 566 LMRGLKKLYNRQIAAEITEKVRKM-----AAERQITFKM 599 (638)
Q Consensus 566 ll~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~ 599 (638)
|...|..+|++++|+.+++++++. +|++|...++
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 777777777777777777777654 3555554433
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.92 E-value=0.014 Score=56.80 Aligned_cols=74 Identities=12% Similarity=0.041 Sum_probs=59.9
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006630 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFA 564 (638)
Q Consensus 487 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 564 (638)
+.+..++..+...+...|++++|...+++++..+ |+...|..+...+...|++++|.+.|+++... .|...||.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 4566777777766777799999999999998874 78778888888899999999999999988865 67776654
No 216
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.81 E-value=0.0039 Score=49.04 Aligned_cols=74 Identities=8% Similarity=-0.016 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD------VMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 524 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
+..-+-.++..+...|+++.|+..|+.+++.. -.+...++..+..++.+.|+++.|...++++++++|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34445567788888888888888888876521 123466788899999999999999999999999999987763
No 217
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.81 E-value=0.017 Score=46.35 Aligned_cols=97 Identities=10% Similarity=0.069 Sum_probs=71.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHh
Q 006630 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE---ACSYCLDMMDADVMP--QPDTFAKLMRGLKK 572 (638)
Q Consensus 498 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~ 572 (638)
+.-.....+..+++-|......|. ++..+--.+.+++.+..+..+ ++.++++..+.+ .| ...-...|.-++.+
T Consensus 9 ~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 9 NELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHH
Confidence 333344455666777776666543 677777778889998887766 888998887653 24 22335566678999
Q ss_pred hcCHHHHHHHHHHHHHHHHhcccc
Q 006630 573 LYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 573 ~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
.|+++.|+++.+.+++.+|+|..+
T Consensus 87 lg~Y~~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999987654
No 218
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.71 E-value=0.063 Score=50.03 Aligned_cols=107 Identities=14% Similarity=0.061 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcc-----CCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHh-hc
Q 006630 506 VEMAKDVWSCIVTKGCELN---VYAWTIWIHSLFSN-----GHVKEACSYCLDMMDADVMP--QPDTFAKLMRGLKK-LY 574 (638)
Q Consensus 506 ~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~-~g 574 (638)
...|...++++++. .|+ -..|..+...|.+. |+.++|.+.|++.++. .| +..++......++. .|
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcC
Confidence 45677777887775 555 45788888888884 8999999999998875 45 35666667777766 48
Q ss_pred CHHHHHHHHHHHHHHHHhc-ccccchhhhhhhhhhHHHHHhhhhh
Q 006630 575 NRQIAAEITEKVRKMAAER-QITFKMYKRRGERDLKEKAKKQVDG 618 (638)
Q Consensus 575 ~~~~A~~~~~~~~~~~p~~-~~~~~~y~~~g~~~~A~~~~~~~~~ 618 (638)
+.+.|.+.+++++..+|.. |. ..+...+..++|..+..++++
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~--~~lan~~~q~eA~~LL~~~~d 297 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPH--NKLLVILSQKRARWLKAHVQD 297 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSS--CHHHHHHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCC--hhHHHHHHHHHHHHHHHHhHH
Confidence 8999999999999988875 44 244555666677777666543
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.66 E-value=0.097 Score=58.12 Aligned_cols=46 Identities=7% Similarity=0.078 Sum_probs=25.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006630 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374 (638)
Q Consensus 323 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 374 (638)
....|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|..+
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34456666666554332 24556666666666666666666665554
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.59 E-value=0.13 Score=57.02 Aligned_cols=75 Identities=13% Similarity=0.082 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006630 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396 (638)
Q Consensus 317 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 396 (638)
..++..+.+.|..++|.++.+.-. .-.......|++++|+++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 445555556666666655442111 0012234456666665553221 2444555555555555
Q ss_pred CCHHHHHHHHHHH
Q 006630 397 EELEECVELMGEM 409 (638)
Q Consensus 397 g~~~~a~~~~~~~ 409 (638)
++++.|.+.|..+
T Consensus 695 ~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 695 FNFKLAIEAFTNA 707 (814)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHc
Confidence 5555555554443
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.49 E-value=0.0077 Score=61.01 Aligned_cols=88 Identities=11% Similarity=-0.065 Sum_probs=54.2
Q ss_pred cCCHHHHHHHHHHHHhC-----CCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHH
Q 006630 466 QGCLIEACEYFKEMVGR-----GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK-----G-CELN-VYAWTIWIH 533 (638)
Q Consensus 466 ~g~~~~A~~~~~~m~~~-----~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~-~~~~~~li~ 533 (638)
.|++++|+.++++.+.. |...+....+++.+..+|...|++++|+.++++++.. | ..|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35666666666665542 1110112345666777777777777777777776543 2 1222 345777778
Q ss_pred HHHccCCHHHHHHHHHHHHh
Q 006630 534 SLFSNGHVKEACSYCLDMMD 553 (638)
Q Consensus 534 ~~~~~g~~~~A~~~~~~m~~ 553 (638)
.|...|++++|..++++.++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 88888888888888777653
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.44 E-value=0.016 Score=58.79 Aligned_cols=93 Identities=9% Similarity=-0.046 Sum_probs=68.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC--CCCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCCC-HH
Q 006630 460 VHGFLGQGCLIEACEYFKEMVGRG--LLSAP----QYGTLKALLNSLLRAQKVEMAKDVWSCIVTK-----G-CELN-VY 526 (638)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~m~~~~--~~~~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~-~~ 526 (638)
+..+..+|++++|+.++++.+... +. .| ...+++.+..+|...|++++|+.++++++.. | ..|+ ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~l-g~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERL-PDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCC-CTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcC-CccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 444566788888888888887642 11 12 2446778888888999999999998887653 2 1222 34
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006630 527 AWTIWIHSLFSNGHVKEACSYCLDMMD 553 (638)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 553 (638)
+++.|...|...|++++|..+++++++
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 688889999999999999999988764
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.36 E-value=0.06 Score=41.01 Aligned_cols=68 Identities=6% Similarity=-0.000 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006630 415 VPDVSNYNVVIRLACKLGE---LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483 (638)
Q Consensus 415 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 483 (638)
+.+...+..+..++...++ .++|..+|++..+.+ +-+......+...+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3445555555555543333 466666666666654 4455566666666666666666666666666655
No 224
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.03 E-value=2.4 Score=46.63 Aligned_cols=256 Identities=7% Similarity=-0.036 Sum_probs=120.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CCCHHHHHHHHHHH
Q 006630 323 LCRMEKMEEANRAFVEMERSG--CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI-------LPNQLTYLHIMLAH 393 (638)
Q Consensus 323 ~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------~p~~~t~~~ll~~~ 393 (638)
....|+.++++.+++.....+ -.+.+..-..+.-+....|..++++.++.......- .+....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 344566666666666544311 011122333344455566666677777766554311 01111112222222
Q ss_pred HhcCC-HHHHHHHHHHHHHCCCCCCHHH--H--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006630 394 EKKEE-LEECVELMGEMRKIGCVPDVSN--Y--NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468 (638)
Q Consensus 394 ~~~g~-~~~a~~~~~~~~~~~~~~~~~~--~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 468 (638)
...|. -+++.+.+..+.... +..+ . -+|...|+-.|+.+....++..+.+.. .-+..-...+.-++...|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCC
Confidence 22221 234555555555421 2111 1 122223445567676777777666532 1122222333444556788
Q ss_pred HHHHHHHHHHHHhCCCCCCCcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 006630 469 LIEACEYFKEMVGRGLLSAPQYG--TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACS 546 (638)
Q Consensus 469 ~~~A~~~~~~m~~~~~~~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 546 (638)
.+.+..+.+.+.... .|... ....+.-+|+..|+.....+++..+... ...++.....+.-++...|+.+.+.+
T Consensus 540 ~e~~~~li~~L~~~~---dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 540 QELADDLITKMLASD---ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp GGGGHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred hHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHH
Confidence 777777777776643 23322 2223444566778877666687777653 12122222222334445666665666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhhcCH-HHHHHHHHHHH
Q 006630 547 YCLDMMDADVMPQPDTFAKLMRGLKKLYNR-QIAAEITEKVR 587 (638)
Q Consensus 547 ~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~-~~A~~~~~~~~ 587 (638)
+++.+.+.+ .|...--..+.-+....|+. ..+.+.+.++.
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 665444432 33333222333333333332 45555655553
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.82 E-value=0.059 Score=41.06 Aligned_cols=66 Identities=11% Similarity=-0.011 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHhCCC---HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 207 PDEFVFGCLLDALCKNSS---VKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272 (638)
Q Consensus 207 ~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (638)
.|...+..+..++...++ .++|..+|++.....|.++.++..+...+.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445555555555543333 466666666666655666666666666666666666666666666654
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.60 E-value=0.092 Score=43.79 Aligned_cols=65 Identities=11% Similarity=0.051 Sum_probs=28.7
Q ss_pred CcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006630 488 PQYGTLKALLNSLLRAQ---KVEMAKDVWSCIVTKGCEL--NVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553 (638)
Q Consensus 488 p~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 553 (638)
++..+...+..++++.+ ++++++.+|+.+.+.. .| ....+-.+.-++.+.|++++|.++++.+++
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34444444444444444 3334555555444432 12 223333344444555555555555555543
No 227
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.45 E-value=0.32 Score=39.64 Aligned_cols=99 Identities=10% Similarity=0.068 Sum_probs=70.9
Q ss_pred CCCHHHHHHHHHHHHccCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccccc
Q 006630 522 ELNVYAWTIWIHSLFSNGHV---KEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFK 598 (638)
Q Consensus 522 ~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 598 (638)
.|+..+--.+.+++.+..+. .+++.++++....+-.-...-...|.-++.+.|+++.|+++.+.+++.+|+|.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~---- 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK---- 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH----
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH----
Confidence 56666666677788877654 57888888887642111233345566689999999999999999999999754
Q ss_pred hhhhhhhhhhHHHHHhhhhhhhhhhhhhhccCCcc
Q 006630 599 MYKRRGERDLKEKAKKQVDGRKRRARQRRWGGGRS 633 (638)
Q Consensus 599 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 633 (638)
+|..+.+.++++..|..-.+.+-.++
T Consensus 112 ---------QA~~Lk~~Ie~~i~kdGliG~ai~gg 137 (144)
T 1y8m_A 112 ---------QVGALKSMVEDKIQKETLKGVVVAGG 137 (144)
T ss_dssp ---------HHHHHHHHHHHHHHHTTTTTCCCCCS
T ss_pred ---------HHHHHHHHHHHHHHHhchhhhhhhhc
Confidence 46777777887777776666544443
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.31 E-value=0.055 Score=44.49 Aligned_cols=108 Identities=9% Similarity=-0.101 Sum_probs=65.2
Q ss_pred CcHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHcCCCCCH-HHHHHHHH------HHHccCCHHHHHHHHHHHHhC
Q 006630 488 PQYGTLKALLNSLLRAQKV------EMAKDVWSCIVTKGCELNV-YAWTIWIH------SLFSNGHVKEACSYCLDMMDA 554 (638)
Q Consensus 488 p~~~~~~~ll~~~~~~g~~------~~A~~~~~~~~~~~~~p~~-~~~~~li~------~~~~~g~~~~A~~~~~~m~~~ 554 (638)
-++.+|-..+...-+.|+. +..+++|+++... ++|+. ..|...|. .+...++.++|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3445555555555555555 5666666666554 33331 11222211 122347888888888888653
Q ss_pred CCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 555 DVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 555 ~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
.-.- ...|.....--.+.|+++.|++++.+++.+.|.....+
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 2222 66677777777778888888888888888887765554
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.19 E-value=0.47 Score=40.64 Aligned_cols=103 Identities=11% Similarity=0.136 Sum_probs=62.6
Q ss_pred HHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhH
Q 006630 217 DALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296 (638)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 296 (638)
+....+|+++.|.++.+.+. +...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l~-----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKLN-----DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHHhcCCHHHHHHHHHHhC-----CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 34456677777777766652 566777777777777777777777776542 3344445555666666
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006630 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM 339 (638)
Q Consensus 297 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 339 (638)
-.++-+.....| -++.....+.-.|+++++.++|.+.
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 555544444432 1344444555667777777776543
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.18 E-value=0.55 Score=40.21 Aligned_cols=27 Identities=4% Similarity=0.067 Sum_probs=12.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006630 382 NQLTYLHIMLAHEKKEELEECVELMGE 408 (638)
Q Consensus 382 ~~~t~~~ll~~~~~~g~~~~a~~~~~~ 408 (638)
+...|..+.......|+++-|.+.|..
T Consensus 33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 33 DSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 334444444444444444444444444
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.01 E-value=0.36 Score=44.97 Aligned_cols=85 Identities=8% Similarity=-0.030 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCc---HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-C
Q 006630 469 LIEACEYFKEMVGRGLLSAPQ---YGTLKALLNSLLR-----AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN-G 539 (638)
Q Consensus 469 ~~~A~~~~~~m~~~~~~~~p~---~~~~~~ll~~~~~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g 539 (638)
..+|...+++.++.+ |+ -..+..+...|.. -|+.++|++.|++.++....-+..++..+.+.+++. |
T Consensus 179 l~~A~a~lerAleLD----P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDLW----PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHC----TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHhC----CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 466777777777765 54 4467777777777 489999999999998874332477788888888884 8
Q ss_pred CHHHHHHHHHHHHhCCCC
Q 006630 540 HVKEACSYCLDMMDADVM 557 (638)
Q Consensus 540 ~~~~A~~~~~~m~~~~~~ 557 (638)
+.++|.+++++.+..+..
T Consensus 255 d~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHHcCCCC
Confidence 899999999998876555
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.84 E-value=0.27 Score=39.54 Aligned_cols=88 Identities=11% Similarity=0.113 Sum_probs=63.0
Q ss_pred CCCCHHHHHHHHHHHHccCCH---HHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccc
Q 006630 521 CELNVYAWTIWIHSLFSNGHV---KEACSYCLDMMDADVMP--QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595 (638)
Q Consensus 521 ~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 595 (638)
..|+..+--.+.+++.+..+. .+++.++++..+.+ | ....+-.|.-++.+.|+++.|+++.+.+++.+|+|..
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 456666666677788777654 56888888887653 4 2444666777889999999999999999999998655
Q ss_pred ccchhhhhhhhhhHHHHHhhhhhhhhhh
Q 006630 596 TFKMYKRRGERDLKEKAKKQVDGRKRRA 623 (638)
Q Consensus 596 ~~~~y~~~g~~~~A~~~~~~~~~~~~~~ 623 (638)
|..+.+.++++..|.
T Consensus 114 -------------A~~Lk~~Ie~ki~kd 128 (134)
T 3o48_A 114 -------------VGALKSMVEDKIQKE 128 (134)
T ss_dssp -------------HHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHhh
Confidence 455555555555443
No 233
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.73 E-value=0.24 Score=38.53 Aligned_cols=33 Identities=18% Similarity=0.107 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCC
Q 006630 210 FVFGCLLDALCKNSSVKEAAKLFDEMRERFKPS 242 (638)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 242 (638)
.++..|..+|.+.|+++.|...+++.....|.+
T Consensus 47 ~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 47 SVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 444444445555555555555554444333333
No 234
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.97 E-value=2 Score=34.59 Aligned_cols=62 Identities=21% Similarity=0.252 Sum_probs=27.5
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006630 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343 (638)
Q Consensus 281 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 343 (638)
....+......|.-++-.+++..+... .+|+....-.+..+|.+.|+..+|.+++.+.-+.|
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 333444444444444444444443221 23344444444445555555555555444444444
No 235
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.97 E-value=9.1 Score=42.16 Aligned_cols=269 Identities=9% Similarity=0.019 Sum_probs=151.2
Q ss_pred HHHHcCCHhHHHHHHHHHHHcC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHH
Q 006630 287 GYAQMGKMTDAFELLKEMRRKG--CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC-------EADVVTYTTLISG 357 (638)
Q Consensus 287 ~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------~~~~~~~~~li~~ 357 (638)
+....|+.+++..++......+ -.+....-..+.-+...+|..+++..++.......- .+....-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4556788888888877665421 112223334444556666766678887777654310 0112222333334
Q ss_pred HHhcCC-HHHHHHHHHHHHHCCCCCCHHH--HH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHH
Q 006630 358 FCKSRK-IDRCYEILDSMIQRGILPNQLT--YL--HIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL--ACK 430 (638)
Q Consensus 358 ~~~~g~-~~~A~~~~~~m~~~~~~p~~~t--~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~ 430 (638)
+.-.|. -+++.+.+..+.... +... .. .+...+...|+.+....++..+.+. .+..+...+.-+ +.-
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALIN 536 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhh
Confidence 443443 246677777776542 2221 22 2233345678888888888877763 233334334443 446
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHH
Q 006630 431 LGELKEAVNVWNEMEAASLSPGTDSFV---VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVE 507 (638)
Q Consensus 431 ~g~~~~A~~~~~~m~~~~~~p~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 507 (638)
.|+.+.+..+.+.+.... .|.. -|. ++.-+|+..|+.....+++..+.... ..+......+.-++...|+.+
T Consensus 537 ~g~~e~~~~li~~L~~~~-dp~v-Rygaa~alglAyaGTGn~~aIq~LL~~~~~d~---~d~VRraAViaLGlI~~g~~e 611 (963)
T 4ady_A 537 YGRQELADDLITKMLASD-ESLL-RYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS---NDDVRRAAVIALGFVLLRDYT 611 (963)
T ss_dssp TTCGGGGHHHHHHHHHCS-CHHH-HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTSSSCS
T ss_pred CCChHHHHHHHHHHHhCC-CHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC---cHHHHHHHHHHHHhhccCCHH
Confidence 789999999988887642 2222 232 34556778899877777888888653 233332222333444567777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006630 508 MAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHV-KEACSYCLDMMDADVMPQPDTFAKLMRGL 570 (638)
Q Consensus 508 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 570 (638)
.+.++++.+.+.+ .|.+..-.++.-+....|.. .+|+..+..+.. .+|..+-...+.++
T Consensus 612 ~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 612 TVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIAL 671 (963)
T ss_dssp SHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHH
Confidence 7777777665543 45554445555555556554 678888888864 45555543333333
No 236
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.96 E-value=2 Score=34.58 Aligned_cols=139 Identities=17% Similarity=0.118 Sum_probs=93.6
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 006630 150 KMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAA 229 (638)
Q Consensus 150 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 229 (638)
-.|..++..++..+..... +..-+|.+|--....-+-+...++++.+-+. -| ...+|++....
T Consensus 19 ldG~v~qGveii~k~~~ss----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC----CccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHH
Confidence 3466677777777766543 4555666666555566666666666554321 22 12466666666
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC
Q 006630 230 KLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309 (638)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 309 (638)
..+-.+.. +.......+..+...|+-++-.+++.++... .+|++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 82 ~C~~~~n~----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 82 ECGVINNT----LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHTTC----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcc----hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 66554432 4556677778888888888888888886442 377888888888899999999999998888888876
Q ss_pred C
Q 006630 310 D 310 (638)
Q Consensus 310 ~ 310 (638)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 4
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.67 E-value=0.97 Score=37.21 Aligned_cols=105 Identities=10% Similarity=0.140 Sum_probs=66.1
Q ss_pred CCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCCCcHH----HHHHHHH---HHHHcCCHHHHHHHHHHH
Q 006630 450 SPGTDSFVVMVHGFLGQGCL------IEACEYFKEMVGRGLLSAPQYG----TLKALLN---SLLRAQKVEMAKDVWSCI 516 (638)
Q Consensus 450 ~p~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~~~p~~~----~~~~ll~---~~~~~g~~~~A~~~~~~~ 516 (638)
+.|..+|-..+....+.|++ ++.+++|++....- +|+.. .|.-+.- .+...+++++|+++|+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~---Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL---PPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMA 86 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS---CGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC---CccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34555666666666655666 66666676666543 23211 1111110 112447888999999988
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 006630 517 VTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558 (638)
Q Consensus 517 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 558 (638)
++..-. =...|.....--.++|+...|.+++.+.+..+..|
T Consensus 87 ~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 87 RANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 766222 27777777777788999999999999988766444
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.54 E-value=0.65 Score=37.19 Aligned_cols=81 Identities=12% Similarity=0.056 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCCCC--cHHHHHHHHHHHHHcCCHHHH
Q 006630 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE---ACEYFKEMVGRGLLSAP--QYGTLKALLNSLLRAQKVEMA 509 (638)
Q Consensus 435 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~A 509 (638)
..+.+-|.+....| .++..+-..+..++.+..+..+ ++.+++++...+ .| ....+-.+.-++.+.|++++|
T Consensus 18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~---~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG---SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS---CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34444444443333 2444454555555555444443 555555554433 12 111222233344455555555
Q ss_pred HHHHHHHHHc
Q 006630 510 KDVWSCIVTK 519 (638)
Q Consensus 510 ~~~~~~~~~~ 519 (638)
+++++.+++.
T Consensus 94 ~~~~~~lL~~ 103 (126)
T 1nzn_A 94 LKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555443
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.24 E-value=1 Score=48.57 Aligned_cols=129 Identities=12% Similarity=0.062 Sum_probs=81.9
Q ss_pred HHHHHHHHHhcCC-hhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhchhC------CCC-CCHH-
Q 006630 141 YRALIKSLSKMRK-FGAVWALMEEMRKEKPQLITTEVFVILMRRFASAR-MVKKAIEVLDEMPKY------GCE-PDEF- 210 (638)
Q Consensus 141 ~~~li~~~~~~~~-~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~------g~~-~~~~- 210 (638)
-..|+..+...++ ++.|..+|+++...+|. .+......++..+...+ +--+|++++.+..+. ..+ .+..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~-~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPI-HDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCc-hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 3455566666666 57899999999888753 12211222333322222 233455555443321 111 1211
Q ss_pred ---------HHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 211 ---------VFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMK 270 (638)
Q Consensus 211 ---------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 270 (638)
..+.=.+.+...|+++.|+++-++...-.|.+-.+|-.|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 122223456678999999999999888778889999999999999999999998888874
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.23 E-value=17 Score=36.66 Aligned_cols=98 Identities=11% Similarity=0.012 Sum_probs=65.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC--HH
Q 006630 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ---YGTLKALLNSLLRAQKVEMAKDVWSCIVTK----GCELN--VY 526 (638)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~ 526 (638)
...|...|...|++.+|.+++.++...-....+. ...+...+..|...+++..|..++.++... ...|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 3456777778888888888888776421110121 234555667788889999998888887432 22222 23
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006630 527 AWTIWIHSLFSNGHVKEACSYCLDMMD 553 (638)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 553 (638)
.+..++..+...+++.+|.+.|.++.+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 567777788888899998888877754
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.07 E-value=17 Score=36.56 Aligned_cols=50 Identities=14% Similarity=0.108 Sum_probs=33.7
Q ss_pred CChhHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhch
Q 006630 152 RKFGAVWALMEEMRKE----KPQLITTEVFVILMRRFASARMVKKAIEVLDEMP 201 (638)
Q Consensus 152 ~~~~~A~~~~~~m~~~----~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 201 (638)
+++++|++-+..+.+. +....+......++..|...++++...+.+..+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls 83 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS 83 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 6778887777655532 1233566777788888888888887766665544
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.40 E-value=4.2 Score=43.81 Aligned_cols=65 Identities=11% Similarity=0.070 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhc---------CHHHHHHHHHHHHH
Q 006630 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLY---------NRQIAAEITEKVRK 588 (638)
Q Consensus 522 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g---------~~~~A~~~~~~~~~ 588 (638)
+.+..-|..|+....+.++++||++.|+..+.. +-++..+..|+..|.+.+ +.+....+.=++..
T Consensus 610 kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~~ 683 (754)
T 4gns_B 610 KHSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKIS 683 (754)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHH
Confidence 445667999999989999999999999998864 678889999999998766 66665555555443
No 243
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=88.99 E-value=25 Score=36.99 Aligned_cols=268 Identities=8% Similarity=-0.027 Sum_probs=127.3
Q ss_pred HHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhC
Q 006630 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKY 203 (638)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 203 (638)
+..|....++.+.....-+.-+..+.+.+++...+.++.. .| .+...-.....+....|+..+|......+-..
T Consensus 58 v~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p--~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~ 131 (618)
T 1qsa_A 58 VTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KP--GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (618)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CC--SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred HHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Confidence 3344444455444444445556667777777666554432 12 25555555666667777777777766666555
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHH--HHHHHHHhcc------------CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 006630 204 GCEPDEFVFGCLLDALCKNSSVKEA--AKLFDEMRER------------FKPSLR-HFTSLLYGWCKEGKLVEAKYVLVQ 268 (638)
Q Consensus 204 g~~~~~~~~~~li~~~~~~g~~~~A--~~~~~~~~~~------------~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~ 268 (638)
| ...+..+..|+..+.+.|.+... ..-++.+... .+++.. ....++..+.. ...+......
T Consensus 132 ~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~ 207 (618)
T 1qsa_A 132 G-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFART 207 (618)
T ss_dssp S-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHH
T ss_pred C-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhc
Confidence 4 33445566677776665544321 1111111111 111111 11111111111 1111111110
Q ss_pred HHHCCCCCCHHH---HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 269 MKDAGFEPDIVV---YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY----TVLIQALCRMEKMEEANRAFVEMER 341 (638)
Q Consensus 269 m~~~g~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 341 (638)
+.++... +...+.-+.+ .+.+.|..++....+...- +.... ..+.......+...++...+.....
T Consensus 208 -----~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~ 280 (618)
T 1qsa_A 208 -----TGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM 280 (618)
T ss_dssp -----SCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH
T ss_pred -----cCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCC-CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc
Confidence 1222221 1112222223 3667777777776543211 22222 2222222333424455556665444
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411 (638)
Q Consensus 342 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 411 (638)
. ..+.....-.+....+.|+++.|...|+.|...... .....--+..++...|+.++|..+|..+.+
T Consensus 281 ~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 281 R--SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp T--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred c--CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3 233333333334445668888888888777553221 334444556677777888888887777653
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.96 E-value=1.6 Score=43.20 Aligned_cols=70 Identities=10% Similarity=0.083 Sum_probs=49.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 006630 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD-----AGFEPDIVVY 281 (638)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~ 281 (638)
...++..+...|++++|...+..+....|-+...|..+|.+|.+.|+..+|++.|++..+ .|+.|...+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 344566667777777777777777666677777777788888888887777777777643 4666666543
No 245
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.92 E-value=18 Score=34.12 Aligned_cols=80 Identities=10% Similarity=-0.031 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006630 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK---EELEECVELMGEMRKIGCVPDVSNYNV 423 (638)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~ 423 (638)
|+..+..+...|.+.|++.+|...|-. |-.-|...+..++.-+... |...++ +.....+
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~Ra 194 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRL 194 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHH
Confidence 667777777788888888887765531 1111234444444333332 322221 1122222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 006630 424 VIRLACKLGELKEAVNVWNEME 445 (638)
Q Consensus 424 li~~~~~~g~~~~A~~~~~~m~ 445 (638)
++ .|.-.|++..|..+|+...
T Consensus 195 VL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 195 VF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HH-HHHHTTBHHHHHHHHHHHH
T ss_pred HH-HHHHhcCHHHHHHHHHHHH
Confidence 23 3555788888888877664
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.45 E-value=10 Score=43.54 Aligned_cols=149 Identities=12% Similarity=0.069 Sum_probs=96.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------------------
Q 006630 214 CLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF------------------- 274 (638)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------------------- 274 (638)
.++..+.+.+..+.+.++..-. +.+...--.+..+|...|++++|.+.|.+.-. |+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccc
Confidence 3445555566666555443322 22444444555666677777777777755321 11
Q ss_pred ----CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006630 275 ----EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA----NSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346 (638)
Q Consensus 275 ----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 346 (638)
..-..-|.-++..+.+.+.++.+.++-...++.....+. ..|..+.+.+...|++++|...+-.+.... .
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~ 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--L 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--S
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--H
Confidence 112235677888888999999998888777664322222 257888899999999999999998888763 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHH
Q 006630 347 DVVTYTTLISGFCKSRKIDRCYE 369 (638)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~ 369 (638)
-......|+..+|..|..+.-+.
T Consensus 970 r~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhhhC
Confidence 45677788888888888776554
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.24 E-value=4.8 Score=39.84 Aligned_cols=54 Identities=7% Similarity=0.091 Sum_probs=24.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006630 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551 (638)
Q Consensus 497 l~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 551 (638)
+.++...|+++++...+..+.... +-+...|..++.+|.+.|+..+|++.|+++
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444445555444444444331 223444445555555555555555544443
No 248
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.87 E-value=4.3 Score=30.71 Aligned_cols=63 Identities=16% Similarity=0.298 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 006630 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321 (638)
Q Consensus 258 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 321 (638)
+.-+..+-++.+....+.|++....+.+++|.+.+++..|.++++-++.+ +.+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 34456666777777777888888888888888888888888888877654 2333445666553
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.56 E-value=25 Score=40.46 Aligned_cols=150 Identities=13% Similarity=0.034 Sum_probs=106.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH--------------------
Q 006630 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR-------------------- 305 (638)
Q Consensus 246 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------------------- 305 (638)
...++..+.+.+..+-+.++..-. +.+...--.+..+|...|++++|.+.|.+.-
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccc
Confidence 345677788889888877755432 3455555567788999999999999996531
Q ss_pred HcC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006630 306 RKG--CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV----VTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379 (638)
Q Consensus 306 ~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 379 (638)
... ...-..-|..++..+-+.+.++.+.++-....+..-..+. ..|..+...+...|++++|...+-.+.....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 111 1223445788899999999999999888776654322222 2588899999999999999999988876544
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHH
Q 006630 380 LPNQLTYLHIMLAHEKKEELEEC 402 (638)
Q Consensus 380 ~p~~~t~~~ll~~~~~~g~~~~a 402 (638)
+ ...+..++..++..+..+.-
T Consensus 970 r--~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 970 K--KSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp C--HHHHHHHHHHHHHHCCHHHH
T ss_pred H--HHHHHHHHHHHHhCCChhhh
Confidence 3 45677777777777765543
No 250
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=85.54 E-value=8.5e-06 Score=80.41 Aligned_cols=229 Identities=15% Similarity=0.143 Sum_probs=123.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006630 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393 (638)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 393 (638)
.+|..|..++.+.+++.+|++-|-+.. |+..|..+|....+.|.+++-+.++....+..-.| ..=+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHH
Confidence 455566666666666665555443322 44455566666666666666666655444432222 2233556666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006630 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473 (638)
Q Consensus 394 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 473 (638)
++.+++.+-.+++ -.||..-...+.+-|...|.++.|.-+|..+.. |.-|...+.+.|++..|.
T Consensus 127 Ak~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AV 190 (624)
T 3lvg_A 127 AKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAV 190 (624)
T ss_dssp HTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSST
T ss_pred HhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHH
Confidence 6666544332222 134444445556666666666666665554432 233344445555555554
Q ss_pred HHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006630 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553 (638)
Q Consensus 474 ~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 553 (638)
+.-++ ..+..||..+-.+|...+.+..|...--.++-. || ....++.-|-..|.++|-+.+++.-+.
T Consensus 191 daArK--------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 191 DGARK--------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp TTTTT--------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHh--------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 33211 234457777888888888777665554444322 11 122345567778888888888777652
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCHHHHHH
Q 006630 554 ADVMPQPDTFAKLMRGLKKLYNRQIAAE 581 (638)
Q Consensus 554 ~~~~p~~~t~~~ll~~~~~~g~~~~A~~ 581 (638)
.. .....+|+-|.-.|.+- +.++-.+
T Consensus 258 lE-rAHmGmFTELaILYsKY-~PeKlmE 283 (624)
T 3lvg_A 258 LE-RAHMGMFTELAILYSKF-KPQKMRE 283 (624)
T ss_dssp ST-TCCHHHHHHHHHHHHSS-CTTHHHH
T ss_pred CC-chhHHHHHHHHHHHHhc-CHHHHHH
Confidence 11 34556677777667653 3343333
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.23 E-value=4.5 Score=30.58 Aligned_cols=63 Identities=10% Similarity=0.206 Sum_probs=43.6
Q ss_pred CHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 006630 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLY 251 (638)
Q Consensus 189 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 251 (638)
+.-+..+-++.+....+-|++.+..+.+.+|.+.+++..|.++|+.++.+..+....|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 344555666666666777888888888888888888888888888877665444445555543
No 252
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=84.72 E-value=0.00035 Score=69.22 Aligned_cols=173 Identities=14% Similarity=0.117 Sum_probs=101.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHH
Q 006630 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496 (638)
Q Consensus 417 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~l 496 (638)
|+..|..+|....+.|.+++-.+.+....+.. .+...=+.|+-+|++.++..+-.+++ ..|+..-...+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEefl---------~~~N~A~iq~V 150 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---------NGPNNAHIQQV 150 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTT---------SCCSSSCTHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHHH---------cCCCcccHHHH
Confidence 33445555555566666666666555554432 22233445666666666654332221 13555555566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCH
Q 006630 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNR 576 (638)
Q Consensus 497 l~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 576 (638)
.+-|...|.++.|.-+|..+. -|.-|..++.+.|+++.|++.-++ .-+..||..+-.+|...+++
T Consensus 151 GDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~Ef 215 (624)
T 3lvg_A 151 GDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEF 215 (624)
T ss_dssp HHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTT
T ss_pred HHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHH
Confidence 777777777777766655332 234455566777777777654222 34566888888888888888
Q ss_pred HHHHHHHHHHHHHHHhcccccchhhhhhhhhhHHHHHhh
Q 006630 577 QIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKAKKQ 615 (638)
Q Consensus 577 ~~A~~~~~~~~~~~p~~~~~~~~y~~~g~~~~A~~~~~~ 615 (638)
..|-..--.++-..-+=+.+++.|...|-++|-..+++.
T Consensus 216 rLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEa 254 (624)
T 3lvg_A 216 RLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEA 254 (624)
T ss_dssp TTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHH
T ss_pred HHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 777655444443323334455777888887776665555
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=84.22 E-value=9.4 Score=32.05 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=27.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc-CCCCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006630 496 LLNSLLRAQKVEMAKDVWSCIVTK-GCELNV-------YAWTIWIHSLFSNGHVKEACSYCLDMM 552 (638)
Q Consensus 496 ll~~~~~~g~~~~A~~~~~~~~~~-~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~ 552 (638)
-+..+...|.++.|+-+.+.+... +..|+. .++..+.+++...|++..|...|++.+
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344445555555555555544332 112221 133444555566666666666665543
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=83.98 E-value=9 Score=30.78 Aligned_cols=72 Identities=8% Similarity=0.043 Sum_probs=49.9
Q ss_pred CCcHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 006630 487 APQYGTLKALLNSLLRAQKV---EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560 (638)
Q Consensus 487 ~p~~~~~~~ll~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 560 (638)
.|+..|--.+..++.+..+. .+++.+++.+.+.+..-....+-.+.-++.+.|++++|.++.+.+++. .|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCC
Confidence 46666666666677776654 468888888876642223455666777888889999999888888854 6654
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.28 E-value=17 Score=30.43 Aligned_cols=56 Identities=11% Similarity=0.202 Sum_probs=31.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHh---cCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHhc
Q 006630 145 IKSLSKMRKFGAVWALMEEMRK---EKPQLITT----EVFVILMRRFASARMVKKAIEVLDEM 200 (638)
Q Consensus 145 i~~~~~~~~~~~A~~~~~~m~~---~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m 200 (638)
+..+...+.|+.|.-+.+.+.. .++...++ .++..+..++...+++..|...|++.
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4556666667666655554332 22221111 24455666666777777777777664
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.16 E-value=5.8 Score=36.32 Aligned_cols=122 Identities=11% Similarity=0.054 Sum_probs=74.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHH
Q 006630 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV----YAWTIWIHSLF 536 (638)
Q Consensus 461 ~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~ 536 (638)
..+.+.|.+++|++....-++.. +-|...-..++.-+|-.|+++.|.+-++...+. .|+. ..|..+|.+-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~---P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~aE- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS---PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAA- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHH-
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC---CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHHH-
Confidence 34566788888888888777776 456666666777888888888888888877765 3332 2333333321
Q ss_pred ccCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHH--hhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 537 SNGHVKEACSYCLDMMDADVMP-----QPDTFAKLMRGLK--KLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 537 ~~g~~~~A~~~~~~m~~~~~~p-----~~~t~~~ll~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
..=.+...-+-.| ...-...++.+.. ..|+.+.|...-..+++..|..+..+
T Consensus 79 ---------~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~ 137 (273)
T 1zbp_A 79 ---------QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 137 (273)
T ss_dssp ---------HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred ---------HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCc
Confidence 1111222212122 1222334444443 45999999999999999987766543
No 257
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.54 E-value=39 Score=31.87 Aligned_cols=165 Identities=12% Similarity=0.029 Sum_probs=95.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHCCCCCCHHHHHHHHHHH
Q 006630 213 GCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYV----LVQMKDAGFEPDIVVYNNLLSGY 288 (638)
Q Consensus 213 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~~ 288 (638)
.++..=|.+.+++++|++++..-.. .+.+.|+...|-++ .+-..+.+++++......++..+
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~ga~--------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQGAL--------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH--------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3445557778888888887655322 24455666555543 44455567788887777777776
Q ss_pred HHcCCHh-HHHHHHHHHHHc----C--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006630 289 AQMGKMT-DAFELLKEMRRK----G--CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361 (638)
Q Consensus 289 ~~~g~~~-~a~~~~~~~~~~----g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 361 (638)
.....-+ .=.++++.+++. | ..-|......+...|.+.|++.+|+..|-.-. .-|...+..++.-+...
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~----~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT----HDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC----HHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CccHHHHHHHHHHHHHh
Confidence 5533211 223444444432 2 22467788899999999999999988775211 11344555555444443
Q ss_pred ---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 362 ---RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410 (638)
Q Consensus 362 ---g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 410 (638)
|...++-- ..-..++ -|.-.++...|..+++...
T Consensus 179 ~~~~~~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 179 VDDIEDSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp TTCCCHHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred cCCCCcchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 44433211 1111222 2445677888888777654
No 258
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.12 E-value=9.8 Score=30.50 Aligned_cols=61 Identities=16% Similarity=0.311 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 006630 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321 (638)
Q Consensus 260 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 321 (638)
-+..+-++.+...++.|++......+++|.+.+++..|.++|+-++.+ +.+...+|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 345666677777778899999999999999999999999999887765 3344556766654
No 259
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.68 E-value=11 Score=30.13 Aligned_cols=61 Identities=10% Similarity=0.229 Sum_probs=43.1
Q ss_pred HHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 006630 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLY 251 (638)
Q Consensus 191 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 251 (638)
-+..+-++.+....+-|++.+...-+.+|-+.+++..|.++|+.++.+..+....|..++.
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 3445555566666777888888888888888888888888888887665555555655543
No 260
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=76.33 E-value=7.5 Score=36.58 Aligned_cols=52 Identities=13% Similarity=0.037 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 541 VKEACSYCLDMMDADVMPQP--DTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 541 ~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
....+++-.-+-.-.+.|.. .++...+..+.|.+|+..|..+++++++++|.
T Consensus 186 ~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 186 TVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp HHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 34444444444445556654 34677788888999999999999999999884
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=75.14 E-value=15 Score=33.68 Aligned_cols=61 Identities=16% Similarity=0.117 Sum_probs=34.8
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 534 SLFSNGHVKEACSYCLDMMDADVMP-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 534 ~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
.+.+.|.+++|++....-++. .| |...=..+...++-.|+++.|.+-++-+.+++|+....
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 67 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence 345566666666666655554 33 33334445555566666666666666666666665444
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.00 E-value=20 Score=35.81 Aligned_cols=62 Identities=8% Similarity=0.026 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006630 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLS--PGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481 (638)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (638)
+...+...|.+.|+++.|.+.|.++...-.. .-...+..++..+...+++..+...+.++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4566777888888888888888887754222 2235666667777777777777777777654
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=73.77 E-value=63 Score=30.73 Aligned_cols=80 Identities=9% Similarity=0.049 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006630 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426 (638)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 426 (638)
|+.....+...|.+.+++.+|...|- .|-.++...|..++..+...+... ..+.....+++.
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL~ 196 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVLP 196 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHHH
Confidence 56666777778888888888877662 133333355555554443333211 222333333333
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 006630 427 LACKLGELKEAVNVWNEME 445 (638)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~ 445 (638)
|.-.+++..|..+|+...
T Consensus 197 -yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 197 -YLLVANVRAANTAYRIFT 214 (336)
T ss_dssp -HHHTTCHHHHHHHHHHHH
T ss_pred -HHHhCCHHHHHHHHHHHH
Confidence 555778888887776654
No 264
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=73.40 E-value=72 Score=31.24 Aligned_cols=92 Identities=12% Similarity=0.104 Sum_probs=43.9
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHc--CCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHH-
Q 006630 283 NLLSGYAQMGKMTDAFELLKEMRRK--GCDP---NANSYTVLIQALCRMEKMEEANRAFVEMERS--GCEADVVTYTTL- 354 (638)
Q Consensus 283 ~ll~~~~~~g~~~~a~~~~~~~~~~--g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~l- 354 (638)
-++..|...|++.+|.+++..+.+. .... -..++..-+.+|...+++.++...+...... .+.+++..-..+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 3455555666666665555555442 1110 1223444555666666766666666655422 111222221111
Q ss_pred ---HHHHH-hcCCHHHHHHHHHHH
Q 006630 355 ---ISGFC-KSRKIDRCYEILDSM 374 (638)
Q Consensus 355 ---i~~~~-~~g~~~~A~~~~~~m 374 (638)
.-.+. ..+++..|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 11233 466677666666554
No 265
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=72.56 E-value=37 Score=27.59 Aligned_cols=70 Identities=9% Similarity=0.045 Sum_probs=39.9
Q ss_pred CcHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 006630 488 PQYGTLKALLNSLLRAQKV---EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ 559 (638)
Q Consensus 488 p~~~~~~~ll~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 559 (638)
|+..+--.+..++.+..+. .+++.+++.+.+.+..-.....-.+.-++.+.|++++|.++.+.+++. +|+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 5555544555556655543 356666666665432222333444555677777777777777777654 554
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=71.89 E-value=21 Score=26.90 Aligned_cols=77 Identities=10% Similarity=0.030 Sum_probs=37.3
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006630 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372 (638)
Q Consensus 293 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 372 (638)
..++|.-+-+.+...+. ...+--+-+..+...|++++|..+.+.+. .||...|-+|-. .+.|..+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 44555555555554432 22222222234455566666665554443 556666655543 34455555555554
Q ss_pred HHHHC
Q 006630 373 SMIQR 377 (638)
Q Consensus 373 ~m~~~ 377 (638)
++..+
T Consensus 94 ~la~s 98 (116)
T 2p58_C 94 RLARS 98 (116)
T ss_dssp HHTTC
T ss_pred HHHhC
Confidence 44444
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=70.69 E-value=32 Score=25.96 Aligned_cols=79 Identities=13% Similarity=-0.008 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 006630 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACS 546 (638)
Q Consensus 467 g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 546 (638)
-+.++|..+-+-+...+ . ...+-.+-+..+...|+|++|..+.+.. +-||.+.|-++- -.+.|..+++..
T Consensus 21 H~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~ 90 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKG---E-EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALC--EYRLGLGSALES 90 (116)
T ss_dssp TCHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHH--HHHHTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHH
Confidence 34566666666555554 2 2222222234556777777777765433 467777776553 346676666666
Q ss_pred HHHHHHhCC
Q 006630 547 YCLDMMDAD 555 (638)
Q Consensus 547 ~~~~m~~~~ 555 (638)
.+.++-..|
T Consensus 91 rL~~la~sg 99 (116)
T 2p58_C 91 RLNRLARSQ 99 (116)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHhCC
Confidence 665555444
No 268
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=68.85 E-value=20 Score=26.94 Aligned_cols=78 Identities=12% Similarity=0.001 Sum_probs=38.4
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006630 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372 (638)
Q Consensus 293 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 372 (638)
..++|.-+-+.+...+. ...+--+-+..+...|++++|..+.+.+. .||...|-+|-. .+.|..+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 44555555555554432 22222222334455666666665554433 556666655543 34555555555555
Q ss_pred HHHHCC
Q 006630 373 SMIQRG 378 (638)
Q Consensus 373 ~m~~~~ 378 (638)
++..+|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 555443
No 269
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=68.78 E-value=82 Score=29.96 Aligned_cols=26 Identities=12% Similarity=0.069 Sum_probs=17.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006630 451 PGTDSFVVMVHGFLGQGCLIEACEYF 476 (638)
Q Consensus 451 p~~~~~~~li~~~~~~g~~~~A~~~~ 476 (638)
-|......+...|.+.+++.+|...|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 34556666777777777777777666
No 270
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.38 E-value=49 Score=32.95 Aligned_cols=60 Identities=13% Similarity=-0.044 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 006630 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAG--FEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304 (638)
Q Consensus 245 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 304 (638)
++..+...|.+.|++++|.+.|.++...- ..--...+-.+++.+...+++..+...+.+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 45556666666666666666666665421 1122234444455555555555555554444
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=65.35 E-value=30 Score=26.02 Aligned_cols=79 Identities=15% Similarity=0.109 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006630 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLV 267 (638)
Q Consensus 188 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 267 (638)
...++|..+-+.+...|. ...+--.-+..+...|++++|..+.+... .||...|-+|-.. +.|..+++..-+.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c---~pdlepw~ALce~--rlGl~s~le~rL~ 92 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP---WPALEPWFALCEW--HLGLGAALDRRLA 92 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC---CGGGHHHHHHHHH--HTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC---CchHHHHHHHHHH--hcccHHHHHHHHH
Confidence 345555555555544321 11111122334455666666665544433 4566666555433 4555555555555
Q ss_pred HHHHCC
Q 006630 268 QMKDAG 273 (638)
Q Consensus 268 ~m~~~g 273 (638)
++...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 555544
No 272
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=64.17 E-value=86 Score=29.48 Aligned_cols=39 Identities=15% Similarity=0.211 Sum_probs=28.6
Q ss_pred CCCCCCH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 554 ADVMPQP--DTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 554 ~~~~p~~--~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
-.+.|.+ .++...+..+.|.+|+..|..+.++++++.|.
T Consensus 190 c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 190 SNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred CCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 4445543 34667777788889999999999999888664
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=63.85 E-value=65 Score=27.98 Aligned_cols=55 Identities=20% Similarity=0.098 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 006630 468 CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523 (638)
Q Consensus 468 ~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p 523 (638)
...++.++|..|...++- .--..-|......+...|++.+|.++|+.-++.+-.|
T Consensus 94 ~~~~p~~if~~L~~~~IG-~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIG-TKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp CHHHHHHHHHHHHHHTSS-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCCHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 355666666666665543 3334455555555566666666666666666655444
No 274
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=60.85 E-value=1.7e+02 Score=30.75 Aligned_cols=77 Identities=14% Similarity=0.012 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC
Q 006630 178 VILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG 257 (638)
Q Consensus 178 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g 257 (638)
...+..+.+.+++...+..+.. .+.+...-.....+....|+..+|......+=............++..+.+.|
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCC
Confidence 3344555566666655554332 13455555556666666777666655555442221223334555555555544
Q ss_pred CH
Q 006630 258 KL 259 (638)
Q Consensus 258 ~~ 259 (638)
.+
T Consensus 151 ~l 152 (618)
T 1qsa_A 151 KQ 152 (618)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 275
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=53.65 E-value=1.1e+02 Score=26.37 Aligned_cols=18 Identities=22% Similarity=0.191 Sum_probs=7.6
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 006630 276 PDIVVYNNLLSGYAQMGK 293 (638)
Q Consensus 276 p~~~~~~~ll~~~~~~g~ 293 (638)
++...-...+.++.+.++
T Consensus 93 ~~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGD 110 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 344444444444444443
No 276
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=48.68 E-value=1.9e+02 Score=27.76 Aligned_cols=65 Identities=12% Similarity=0.247 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCC
Q 006630 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK--IDRCYEILDSMIQRGILP 381 (638)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p 381 (638)
.+.++.-|...|+.++|.+.++++..-... ...+..++..++-+.++ .+...+++..+...|+.+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 355666777777777777777776521111 12333444444443322 344566666666665543
No 277
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=46.78 E-value=41 Score=30.64 Aligned_cols=14 Identities=14% Similarity=-0.052 Sum_probs=5.9
Q ss_pred HHHhCCCHHHHHHH
Q 006630 218 ALCKNSSVKEAAKL 231 (638)
Q Consensus 218 ~~~~~g~~~~A~~~ 231 (638)
..+..|+.+-+..+
T Consensus 45 ~A~~~g~~~~v~~L 58 (285)
T 1wdy_A 45 NAVQMSREDIVELL 58 (285)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHH
Confidence 33444554433333
No 278
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=46.77 E-value=1.3e+02 Score=25.46 Aligned_cols=18 Identities=22% Similarity=0.191 Sum_probs=8.4
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 006630 276 PDIVVYNNLLSGYAQMGK 293 (638)
Q Consensus 276 p~~~~~~~ll~~~~~~g~ 293 (638)
++...-...+.++.+.++
T Consensus 88 ~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 344444444444444444
No 279
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=45.85 E-value=1.5e+02 Score=25.66 Aligned_cols=37 Identities=11% Similarity=0.221 Sum_probs=21.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006630 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE 397 (638)
Q Consensus 360 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 397 (638)
+..+.+.|+-.+.+|++.| .|....-..++.+....|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 3467777777777777777 554444444444444433
No 280
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=44.51 E-value=1.6e+02 Score=25.58 Aligned_cols=52 Identities=15% Similarity=0.091 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006630 225 VKEAAKLFDEMRER--FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEP 276 (638)
Q Consensus 225 ~~~A~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 276 (638)
..++..+|..|..+ ...-...|......+...|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44555555555332 22234445555555555555555555555555554444
No 281
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=44.08 E-value=37 Score=30.97 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=9.9
Q ss_pred HHHHHHhCCCHHHHHHHHH
Q 006630 215 LLDALCKNSSVKEAAKLFD 233 (638)
Q Consensus 215 li~~~~~~g~~~~A~~~~~ 233 (638)
.+...++.|+++....+++
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~ 26 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLE 26 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 3444455666655554444
No 282
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=43.91 E-value=1.3e+02 Score=24.65 Aligned_cols=51 Identities=14% Similarity=0.097 Sum_probs=23.1
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 006630 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL 523 (638)
Q Consensus 472 A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p 523 (638)
+.++|..|...++- .--..-|......+-..|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG-~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIG-TLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTT-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCc-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44455555544442 2233334444444444555555555555544443333
No 283
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=43.07 E-value=91 Score=26.05 Aligned_cols=50 Identities=12% Similarity=0.268 Sum_probs=21.5
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 006630 509 AKDVWSCIVTKGCELN-VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558 (638)
Q Consensus 509 A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 558 (638)
+.++|..|...|+.-. ...|......+-..|++.+|.++|+.-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3344444444433222 2233444444444455555555554444444444
No 284
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=41.59 E-value=84 Score=26.32 Aligned_cols=12 Identities=25% Similarity=0.853 Sum_probs=0.0
Q ss_pred hhhhhhccCCcc
Q 006630 622 RARQRRWGGGRS 633 (638)
Q Consensus 622 ~~~~~~~~~~~~ 633 (638)
..-.+.|++||+
T Consensus 154 ~~~~~~Wg~g~g 165 (165)
T 2rg8_A 154 KRKDSVWGSGGG 165 (165)
T ss_dssp ------------
T ss_pred HHHHhhcCCCCC
Confidence 555666998874
No 285
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=41.12 E-value=87 Score=28.06 Aligned_cols=90 Identities=11% Similarity=0.046 Sum_probs=47.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 006630 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLIT-----TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDA 218 (638)
Q Consensus 144 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 218 (638)
-++++....+|++|.+++++....-....+ .......++.-...+.-.-+..+.+.+. . .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h--cCCHHHHHHHHHH
Confidence 467778888899998888876543111010 0111222333333333333444444442 2 3445555666677
Q ss_pred HHhCCCHHHHHHHHHHHh
Q 006630 219 LCKNSSVKEAAKLFDEMR 236 (638)
Q Consensus 219 ~~~~g~~~~A~~~~~~~~ 236 (638)
+.+.|+-++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 777777777777775543
No 286
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=40.09 E-value=1.8e+02 Score=24.92 Aligned_cols=123 Identities=16% Similarity=0.084 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006630 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286 (638)
Q Consensus 207 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 286 (638)
+|..+-...+.++.+.++.+.. ..+..+.. .++...-...+.++.+.|+.+ +...+.++.. .++...-...+.
T Consensus 62 ~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~--~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 134 (211)
T 3ltm_A 62 EDAWVRRAAADALGQIGDERAV-EPLIKALK--DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAF 134 (211)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT--CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc--CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHH
Confidence 4444444555555555543222 22222221 235555555555555555532 3333333332 455555555666
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341 (638)
Q Consensus 287 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (638)
++...|+.+ +...+..+.+ .++..+-...+.++.+.+. +++...+..+.+
T Consensus 135 aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 135 ALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 666665533 3333333332 2455555555555555555 334444444443
No 287
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=38.99 E-value=1.8e+02 Score=25.07 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=21.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006630 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395 (638)
Q Consensus 360 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 395 (638)
+..+.+.|+-.+.+|++.|-.|....-..++.+...
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsED 54 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASED 54 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 346777777777777777665554444444444433
No 288
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=38.72 E-value=1.5e+02 Score=24.31 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=11.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHH
Q 006630 213 GCLLDALCKNSSVKEAAKLFDEM 235 (638)
Q Consensus 213 ~~li~~~~~~g~~~~A~~~~~~~ 235 (638)
..++.-|...|+.++|...++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 33444444455555555555544
No 289
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=38.39 E-value=2.5e+02 Score=26.22 Aligned_cols=66 Identities=14% Similarity=0.237 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCC
Q 006630 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK--IDRCYEILDSMIQRGILPN 382 (638)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~ 382 (638)
...++.-|...|+.++|.+.++++..-... ...+..++..++-+.++ .+...+++..+.+.|+.+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 356778888889999999999888621101 12344444444444333 3456677888877766543
No 290
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=38.34 E-value=3.6e+02 Score=30.05 Aligned_cols=108 Identities=11% Similarity=0.012 Sum_probs=60.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------------------
Q 006630 215 LLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFE------------------- 275 (638)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~------------------- 275 (638)
++..+...|..+-|.++. ...+.+...--.+..+|...|++++|.+.|++.- .|+.
T Consensus 816 l~~~L~~~~~~~~a~eL~----~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----GWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----GGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHhcHHHHHHHHH----hhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccchhhhhhccCcc
Confidence 444445555555443322 2222343333345556666666666666665432 1111
Q ss_pred ----CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHhcC
Q 006630 276 ----PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA----NSYTVLIQALCRME 327 (638)
Q Consensus 276 ----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g 327 (638)
....-|..++..+-+.+.++.+.++-+..++.--..|. ..|..+..+++..|
T Consensus 891 e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 891 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 11236788899999999999999988888765222233 35666677766554
No 291
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=38.27 E-value=1.4e+02 Score=26.70 Aligned_cols=23 Identities=13% Similarity=0.057 Sum_probs=17.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhchh
Q 006630 180 LMRRFASARMVKKAIEVLDEMPK 202 (638)
Q Consensus 180 li~~~~~~~~~~~A~~~~~~m~~ 202 (638)
-+..+....++++|++++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 46677788999999998887653
No 292
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=37.33 E-value=3.2e+02 Score=27.13 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=21.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006630 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393 (638)
Q Consensus 360 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 393 (638)
+.++.+.|+.++.+|.+.|..|....-..+..+.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~ 300 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIAS 300 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4567888888888888877665444444344443
No 293
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=36.29 E-value=1.6e+02 Score=23.31 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=11.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHH
Q 006630 214 CLLDALCKNSSVKEAAKLFDEM 235 (638)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~~ 235 (638)
.++.-|...|+.++|...++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444444455555555555554
No 294
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=34.25 E-value=99 Score=27.34 Aligned_cols=27 Identities=11% Similarity=0.006 Sum_probs=11.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006630 493 LKALLNSLLRAQKVEMAKDVWSCIVTK 519 (638)
Q Consensus 493 ~~~ll~~~~~~g~~~~A~~~~~~~~~~ 519 (638)
|......+-..|++.+|.++|+.-++.
T Consensus 153 Ye~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 153 YEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 333333334444444444444444433
No 295
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=33.08 E-value=2.5e+02 Score=24.51 Aligned_cols=38 Identities=21% Similarity=0.194 Sum_probs=22.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006630 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE 397 (638)
Q Consensus 360 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 397 (638)
+..+.+.|+-++.+|++.|-.|....-..++.+....|
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34677777777777777766555544444444444333
No 296
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=32.05 E-value=41 Score=29.67 Aligned_cols=18 Identities=11% Similarity=0.047 Sum_probs=8.6
Q ss_pred HHHHHhCCCHHHHHHHHH
Q 006630 216 LDALCKNSSVKEAAKLFD 233 (638)
Q Consensus 216 i~~~~~~g~~~~A~~~~~ 233 (638)
+...+..|+.+-+..+++
T Consensus 46 L~~A~~~~~~~~v~~Ll~ 63 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYYIS 63 (240)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHH
Confidence 344455565554444443
No 297
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=30.93 E-value=1.4e+02 Score=27.91 Aligned_cols=67 Identities=13% Similarity=0.137 Sum_probs=40.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC--HHHHHHHHHHHHhCCCCCCH
Q 006630 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH--VKEACSYCLDMMDADVMPQP 560 (638)
Q Consensus 493 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~ 560 (638)
...++.-|...|+.++|.+.++++..-.+. ......++..++-+.++ .+....++..+.+.|+-+..
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 456777888889999999998887421111 12334455555555433 34456677777665554433
No 298
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=30.46 E-value=4.2e+02 Score=26.43 Aligned_cols=83 Identities=16% Similarity=0.087 Sum_probs=32.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006630 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM 291 (638)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 291 (638)
|..-.+.+...|++++|.++--.-+.+.-.+..|.+.+-..=...|+..--+.+|.-+.+.| ..+..---.+++.-...
T Consensus 364 ~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ESlEl~r~vL~q 442 (494)
T 1bpo_A 364 FARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYESLELCRPVLQQ 442 (494)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHhhHHhHHHHhc
Confidence 33333444444444444444444333333333333333222222333333444444444444 33332222333333344
Q ss_pred CCHh
Q 006630 292 GKMT 295 (638)
Q Consensus 292 g~~~ 295 (638)
|+.+
T Consensus 443 ~r~~ 446 (494)
T 1bpo_A 443 GRKQ 446 (494)
T ss_dssp TCHH
T ss_pred cHHH
Confidence 4433
No 299
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.59 E-value=4.6e+02 Score=26.60 Aligned_cols=64 Identities=16% Similarity=0.122 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH--HHHH-HHHHHHHhcCCHHHHHHHHHHHHhC
Q 006630 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASL-SPGT--DSFV-VMVHGFLGQGCLIEACEYFKEMVGR 482 (638)
Q Consensus 419 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~--~~~~-~li~~~~~~g~~~~A~~~~~~m~~~ 482 (638)
..+|.+++.|...+.++.|..+..+..-... .++. ..|. .+...+.-++++.+|.+.+....+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3455555566666666666666655531100 0111 1111 2334444556666666666555543
No 300
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.07 E-value=4.7e+02 Score=26.53 Aligned_cols=64 Identities=11% Similarity=0.081 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHh--ccCCCCH--HHH-HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 209 EFVFGCLLDALCKNSSVKEAAKLFDEMR--ERFKPSL--RHF-TSLLYGWCKEGKLVEAKYVLVQMKDA 272 (638)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~--~~~-~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (638)
...+|.++..|...+.++.|..+..+.. ....+|. ..| -.+...+.-.+++.+|.+.|......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3567777777777788888877777663 1111111 111 12345556667777777777666543
No 301
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=27.83 E-value=4.1e+02 Score=25.44 Aligned_cols=66 Identities=17% Similarity=0.238 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCC
Q 006630 351 YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE--LEECVELMGEMRKIGCVPD 417 (638)
Q Consensus 351 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~ 417 (638)
.+.++.-|...|+.++|...++++...... .......+..++-+.++ .+...+++..+.+.|+-+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 466777888888999998888888532111 23334444455554433 3456667777776654443
No 302
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=27.82 E-value=1.2e+02 Score=26.49 Aligned_cols=21 Identities=14% Similarity=0.253 Sum_probs=9.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCC
Q 006630 253 WCKEGKLVEAKYVLVQMKDAG 273 (638)
Q Consensus 253 ~~~~g~~~~A~~~~~~m~~~g 273 (638)
.++.|+.+.+..+++.+.+.|
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 344455555444444444443
No 303
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=27.27 E-value=5.7e+02 Score=26.92 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=25.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Q 006630 214 CLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCK 255 (638)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~ 255 (638)
.+|--|.++|++++|.++.++....+..-...+...+..|+.
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC--
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHh
Confidence 455667789999999998887765433223455566666663
No 304
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=27.23 E-value=5.7e+02 Score=26.91 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 006630 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFAS 186 (638)
Q Consensus 140 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 186 (638)
+| .+|--+.|+|.+++|.++.++..... .. ....|...+..|+.
T Consensus 155 ~W-a~IyY~LR~G~~~~A~e~~~~~~~~~-~~-~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 155 IW-ALIFYLLRAGLIKEALQVLVENKANI-KK-VEQSFLTYFKAYAS 198 (661)
T ss_dssp HH-HHHHHHHTTTCHHHHHHHHHHTGGGC-------CHHHHHHHC--
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhhH-hh-hhHHHHHHHHHHHh
Confidence 55 45667789999999999987765432 11 12346666666663
No 305
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=27.01 E-value=2.8e+02 Score=23.29 Aligned_cols=90 Identities=16% Similarity=0.050 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 006630 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321 (638)
Q Consensus 242 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 321 (638)
+...-...+.++.+.|+.+ +...+.++.. .++...-...+.++.+.++.+ +...+..+.. .++..+-...+.
T Consensus 89 ~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~ 160 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAAD 160 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 4444444444555544432 2223333332 345544455555555555432 2233333332 234445555555
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 006630 322 ALCRMEKMEEANRAFVEME 340 (638)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~ 340 (638)
++.+.|.. ++...+..+.
T Consensus 161 aL~~~~~~-~~~~~L~~~l 178 (201)
T 3ltj_A 161 ALGEIGGE-RVRAAMEKLA 178 (201)
T ss_dssp HHHHHCSH-HHHHHHHHHH
T ss_pred HHHHhCch-hHHHHHHHHH
Confidence 55555543 2333444333
No 306
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=26.84 E-value=2.3e+02 Score=22.31 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=12.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 006630 494 KALLNSLLRAQKVEMAKDVWSCI 516 (638)
Q Consensus 494 ~~ll~~~~~~g~~~~A~~~~~~~ 516 (638)
..++.-|...|+.++|.+.++++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 34455555555555555555554
No 307
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=26.64 E-value=3.6e+02 Score=24.40 Aligned_cols=49 Identities=12% Similarity=0.058 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHh---CCCCCCHHHHHHH-HH----HHHhhcCHHHHHHHHHHHHHHH
Q 006630 542 KEACSYCLDMMD---ADVMPQPDTFAKL-MR----GLKKLYNRQIAAEITEKVRKMA 590 (638)
Q Consensus 542 ~~A~~~~~~m~~---~~~~p~~~t~~~l-l~----~~~~~g~~~~A~~~~~~~~~~~ 590 (638)
+.|.+.|+++.+ ..+.|...+...| ++ -|--.++.++|.+++++++...
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~A 229 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDA 229 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 455566665543 2467754443333 22 2334689999999988887654
No 308
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=25.93 E-value=1.1e+02 Score=21.79 Aligned_cols=48 Identities=19% Similarity=0.003 Sum_probs=27.8
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccccchhhhhhhhhhHHH
Q 006630 564 AKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEK 611 (638)
Q Consensus 564 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~y~~~g~~~~A~~ 611 (638)
..+.+-|+..|||+.|..+|+-+++.--..-..++=-...++|....+
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~d~~~r~kW~~~~~ 63 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQ 63 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCHHHHHhHHHHHH
Confidence 345556666777777777777777654443333332345566665544
No 309
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=25.31 E-value=87 Score=28.79 Aligned_cols=14 Identities=14% Similarity=0.216 Sum_probs=6.4
Q ss_pred HhcCCHHHHHHHHH
Q 006630 185 ASARMVKKAIEVLD 198 (638)
Q Consensus 185 ~~~~~~~~A~~~~~ 198 (638)
+..|+.+-+..+++
T Consensus 39 ~~~g~~~~v~~Ll~ 52 (285)
T 3kea_A 39 IADNNVRLVCTLLN 52 (285)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 34555544444443
No 310
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=24.56 E-value=1.3e+02 Score=24.69 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=12.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 317 TVLIQALCRMEKMEEANRAFVEME 340 (638)
Q Consensus 317 ~~li~~~~~~g~~~~A~~~~~~m~ 340 (638)
+.++.-|...|+.++|.+.++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 444555555555555555555543
No 311
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=24.38 E-value=3.2e+02 Score=23.02 Aligned_cols=20 Identities=10% Similarity=0.084 Sum_probs=12.8
Q ss_pred HHHcCCHHHHHHHHHHHHHc
Q 006630 500 LLRAQKVEMAKDVWSCIVTK 519 (638)
Q Consensus 500 ~~~~g~~~~A~~~~~~~~~~ 519 (638)
+-+..++..|..-++.+++.
T Consensus 72 y~klKdYkkA~~~le~il~~ 91 (242)
T 3kae_A 72 YKKKKDYKKAIKSLESILEG 91 (242)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 44666677777777766644
No 312
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=24.37 E-value=5e+02 Score=25.24 Aligned_cols=93 Identities=14% Similarity=-0.020 Sum_probs=60.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHc--CCCCCHHhHHH--
Q 006630 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPD-----IVVYNNLLSGYAQMGKMTDAFELLKEMRRK--GCDPNANSYTV-- 318 (638)
Q Consensus 248 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~~~~~~~~~~-- 318 (638)
-++..|...|++.+|.+++.++.+.=-..| ...|..-+..|...+++..+...+...... .+.+++.+-..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 577888888888888888888776311111 234556677888889999999888877543 22233322211
Q ss_pred --HHHHHH-hcCCHHHHHHHHHHHH
Q 006630 319 --LIQALC-RMEKMEEANRAFVEME 340 (638)
Q Consensus 319 --li~~~~-~~g~~~~A~~~~~~m~ 340 (638)
-.-.+. ..+++..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 122345 6889999988887654
No 313
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=23.64 E-value=1.1e+02 Score=20.49 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCC
Q 006630 155 GAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPD 208 (638)
Q Consensus 155 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~ 208 (638)
++.++.+.+| .|. .+..+...++.. ..|+++.|+..+-.|...+..|+
T Consensus 10 ee~l~~L~em---FP~-ld~~~I~~vL~a--~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 10 EEDLKAIQDM---FPN-MDQEVIRSVLEA--QRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp HHHHHHHHHH---CSS-SCHHHHHHHHTT--TTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HHHHHHHHHH---CCC-CCHHHHHHHHHH--cCCCHHHHHHHHHcCcCCCCCCC
Confidence 4555555555 454 466655555543 36788888888888776655554
No 314
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=23.29 E-value=8.5e+02 Score=28.18 Aligned_cols=144 Identities=10% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC------------------------------------CH
Q 006630 216 LDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG------------------------------------KL 259 (638)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g------------------------------------~~ 259 (638)
+..+.+. +.+++.++|+++.+.+|.....+..++..+.... ..
T Consensus 1115 ~~~~~k~-~~~~~~~~~~~l~~~~P~~l~~~~~~l~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1193 (1354)
T 3lxu_X 1115 CSQIVKC-ELEMAEKIYNDVVAAHPKHLQANLLLIQNIESNQLKSQLPLTFVNAQKTSPPEAGESADKQKEDQKKVRSAL 1193 (1354)
T ss_dssp HHHHTTS-CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHSSCCCCHHHHHHTTSCCCSSCTTHHHHTTHHHHHHHHHH
T ss_pred HHHHhhc-ChHHHHHHHHHHHHHCCccHHHHHHHHHhhhhhhhhcccccccccccccccccccccccccchhhhhHHHHH
Q ss_pred HHHHHHHHHHHHC----------CCCCCHH------------HHHHHHHHHHH---------------cCCHhHHHHHHH
Q 006630 260 VEAKYVLVQMKDA----------GFEPDIV------------VYNNLLSGYAQ---------------MGKMTDAFELLK 302 (638)
Q Consensus 260 ~~A~~~~~~m~~~----------g~~p~~~------------~~~~ll~~~~~---------------~g~~~~a~~~~~ 302 (638)
++.+++-++.++. |.+.|.. .-+.|+.++++ ....+...+.|.
T Consensus 1194 ~~ii~~ad~vi~~id~~~l~~~~g~k~d~~~~a~k~k~~m~~~k~~l~~al~~k~~ala~~~~~~~~~~~~~~~~~~~~~ 1273 (1354)
T 3lxu_X 1194 ERIVKLADKVIQETDSEALLSYYGLKNDTRADAAKIKTNMDKQKNTLIEALSKKGIAVAKLAVLDDCIKDSLAEINELYT 1273 (1354)
T ss_dssp HHHHHHHHHTTCHHHHTTTSTTCCSTHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006630 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362 (638)
Q Consensus 303 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 362 (638)
++.+.--.-|.......+......+++-.|++++.++.+. +|....|..++..+...|
T Consensus 1274 el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~~~l~ 1331 (1354)
T 3lxu_X 1274 EIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE--KRTRDHFVELAAINGALG 1331 (1354)
T ss_dssp HHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHS
T ss_pred HHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHcC
No 315
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=23.27 E-value=3.1e+02 Score=22.46 Aligned_cols=31 Identities=19% Similarity=0.085 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006630 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFE 275 (638)
Q Consensus 245 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 275 (638)
.|......+...|++.+|.++|+.-++.+-.
T Consensus 103 fYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 103 LYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 3444444444444444444444444444333
No 316
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=23.05 E-value=5e+02 Score=24.85 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHH
Q 006630 280 VYNNLLSGYAQMGKMTDAFELLKEMR 305 (638)
Q Consensus 280 ~~~~ll~~~~~~g~~~~a~~~~~~~~ 305 (638)
....++.-|...|+.++|.+.++++.
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 34566777777777777777777764
No 317
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=22.98 E-value=1.4e+02 Score=26.29 Aligned_cols=52 Identities=10% Similarity=0.089 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 006630 507 EMAKDVWSCIVTKGCELN-VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558 (638)
Q Consensus 507 ~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 558 (638)
+.+.++|..|...|+.-. ...|......+...|++++|..+|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 355566666665544322 3345555566666666666666666665555455
No 318
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=22.80 E-value=1.4e+02 Score=26.10 Aligned_cols=22 Identities=5% Similarity=-0.019 Sum_probs=10.8
Q ss_pred HHHhcCCHHHHHHHHHhchhCC
Q 006630 183 RFASARMVKKAIEVLDEMPKYG 204 (638)
Q Consensus 183 ~~~~~~~~~~A~~~~~~m~~~g 204 (638)
..+..|+.+....+++.+.+.|
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcC
Confidence 3344555555555555443333
No 319
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=22.06 E-value=1.6e+02 Score=26.81 Aligned_cols=86 Identities=14% Similarity=0.133 Sum_probs=41.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCH
Q 006630 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNR 576 (638)
Q Consensus 497 l~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 576 (638)
+...+..|..+-+..+++.-..... .+..-++..+..-+..|+.+ +++-+++.|..|+..... -...|+.
T Consensus 165 L~~A~~~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~~----~v~~Ll~~gad~~~~~~~-----a~~~~~~ 234 (285)
T 3kea_A 165 IHITIKNGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDIE----MLQALFKYDINIYSANLE-----NVLLDDA 234 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCHH----HHHHHTTSCBCSTTTTGG-----GGTTTCH
T ss_pred HHHHHHcChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCHH----HHHHHHHcCCCCCCCChh-----hhhcCCH
Confidence 4444566777666555554332211 11111122122233455543 344455667777655421 1235677
Q ss_pred HHHHHHHHHHHHHHHh
Q 006630 577 QIAAEITEKVRKMAAE 592 (638)
Q Consensus 577 ~~A~~~~~~~~~~~p~ 592 (638)
+..+.+++.-.+...+
T Consensus 235 ~iv~~Ll~~g~~~~~~ 250 (285)
T 3kea_A 235 EIAKMIIEKHVEYKSD 250 (285)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCCCCc
Confidence 7666666665554443
No 320
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=21.31 E-value=1.7e+02 Score=24.64 Aligned_cols=13 Identities=15% Similarity=0.317 Sum_probs=5.5
Q ss_pred HHHHHHHHHCCCC
Q 006630 368 YEILDSMIQRGIL 380 (638)
Q Consensus 368 ~~~~~~m~~~~~~ 380 (638)
.++.+.+.+.|..
T Consensus 94 ~~iv~~Ll~~Gad 106 (186)
T 3t8k_A 94 TELCKIFLEKGAD 106 (186)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCC
Confidence 3444444444433
No 321
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.36 E-value=3.4e+02 Score=23.75 Aligned_cols=68 Identities=16% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCC
Q 006630 434 LKEAVNVWNEMEAASLSPGTD-------SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK 505 (638)
Q Consensus 434 ~~~A~~~~~~m~~~~~~p~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~ 505 (638)
++.|+.+|+.+.+.-..++.. .-...+..|.+.|.+++|.+++++..... ++..-+..-+....+..+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~----~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKD----PTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTC----GGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCC----CCchHHHHHHHHHHhccC
No 322
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.35 E-value=3.4e+02 Score=21.78 Aligned_cols=58 Identities=10% Similarity=0.016 Sum_probs=26.9
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 006630 269 MKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRME 327 (638)
Q Consensus 269 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 327 (638)
+.+.|++++..=. .++..+...+..-.|.++++.+.+.+...+..|.--.++.+...|
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 4445555444322 333444444445556666666655544444444333444444433
No 323
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=20.26 E-value=1.1e+02 Score=29.08 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 316 YTVLIQALCRMEKMEEANRAFVEME 340 (638)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~~~~m~ 340 (638)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4667778888888888888888775
No 324
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=20.14 E-value=1.1e+02 Score=23.94 Aligned_cols=44 Identities=14% Similarity=0.131 Sum_probs=19.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 006630 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586 (638)
Q Consensus 538 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~ 586 (638)
.|+.+-+.+++..+++. .+... ..+......+|++.......++
T Consensus 16 ~g~~~L~~~lL~~fl~~----~~~~~-~~l~~a~~~~d~~~l~~~aHkL 59 (119)
T 3myf_A 16 NHKSNLALEMLKMLLDS----LPETV-EKIQTALGQNDQATMLSTIHKL 59 (119)
T ss_dssp TTCHHHHHHHHHHHHHH----HHHHH-HHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh----HHHHH-HHHHHHHHcCCHHHHHHHHHHH
Confidence 35555555555554432 11112 2233333445665555554443
No 325
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.03 E-value=3.1e+02 Score=21.23 Aligned_cols=51 Identities=8% Similarity=-0.025 Sum_probs=32.3
Q ss_pred hcCHHHHHHHHHHHHHHHHhcc-cccch-hhhhhhhhhHHHHHhhhhhhhhhh
Q 006630 573 LYNRQIAAEITEKVRKMAAERQ-ITFKM-YKRRGERDLKEKAKKQVDGRKRRA 623 (638)
Q Consensus 573 ~g~~~~A~~~~~~~~~~~p~~~-~~~~~-y~~~g~~~~A~~~~~~~~~~~~~~ 623 (638)
.|+.+.|.++|++.+..--.-- ...+. -..-..|++|.++.+||++-..-.
T Consensus 35 ~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v 87 (116)
T 2dl1_A 35 LGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNV 87 (116)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHH
Confidence 4888888888888776432211 11111 145678999999988877655433
Done!