Query 006633
Match_columns 637
No_of_seqs 596 out of 3272
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 12:15:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006633.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006633hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 2E-152 5E-157 1226.8 33.5 500 106-619 1-506 (506)
2 PF03141 Methyltransf_29: Puta 100.0 2.8E-32 6.1E-37 295.6 7.3 197 402-623 33-264 (506)
3 PLN02336 phosphoethanolamine N 99.8 4.2E-20 9.1E-25 206.1 18.5 327 206-580 27-369 (475)
4 COG2226 UbiE Methylase involve 99.6 1E-14 2.3E-19 148.4 12.6 111 204-321 39-156 (238)
5 PF08241 Methyltransf_11: Meth 99.6 1.4E-14 3E-19 124.1 10.2 92 223-319 1-95 (95)
6 PF01209 Ubie_methyltran: ubiE 99.5 1.7E-14 3.7E-19 147.0 10.3 108 207-321 38-153 (233)
7 COG2227 UbiG 2-polyprenyl-3-me 99.5 1.5E-13 3.1E-18 138.5 9.9 151 164-325 10-165 (243)
8 PTZ00098 phosphoethanolamine N 99.5 1.5E-13 3.2E-18 142.6 10.3 114 204-322 40-157 (263)
9 PRK10258 biotin biosynthesis p 99.5 6.3E-13 1.4E-17 136.2 14.7 112 204-322 30-141 (251)
10 PLN02396 hexaprenyldihydroxybe 99.5 4.7E-13 1E-17 142.5 13.7 102 218-324 131-238 (322)
11 PLN02233 ubiquinone biosynthes 99.5 5.8E-13 1.3E-17 138.0 14.0 108 208-322 65-183 (261)
12 PF13489 Methyltransf_23: Meth 99.4 5.8E-13 1.3E-17 125.4 10.0 146 204-360 9-160 (161)
13 PLN02244 tocopherol O-methyltr 99.4 1.4E-12 3.1E-17 140.0 13.0 115 203-322 100-224 (340)
14 PRK11207 tellurite resistance 99.4 2.2E-12 4.7E-17 128.1 11.6 107 208-320 22-133 (197)
15 PRK14103 trans-aconitate 2-met 99.4 2.7E-12 5.9E-17 132.1 11.9 107 206-322 19-127 (255)
16 PRK01544 bifunctional N5-gluta 99.4 8.7E-11 1.9E-15 132.5 24.4 115 476-594 346-477 (506)
17 TIGR00477 tehB tellurite resis 99.3 6.8E-12 1.5E-16 124.4 12.5 109 208-320 22-132 (195)
18 PRK11088 rrmA 23S rRNA methylt 99.3 7.8E-12 1.7E-16 130.1 13.4 159 130-323 20-183 (272)
19 PRK05785 hypothetical protein; 99.3 1.5E-11 3.3E-16 124.8 13.2 89 219-315 52-141 (226)
20 TIGR02752 MenG_heptapren 2-hep 99.3 1.6E-11 3.4E-16 124.0 13.2 110 204-322 33-152 (231)
21 PF02353 CMAS: Mycolic acid cy 99.3 8.4E-12 1.8E-16 130.2 11.3 123 191-321 37-166 (273)
22 PRK11036 putative S-adenosyl-L 99.3 1.1E-11 2.4E-16 127.6 11.6 111 207-322 33-150 (255)
23 PRK01683 trans-aconitate 2-met 99.3 1.5E-11 3.2E-16 126.5 12.0 110 205-322 20-131 (258)
24 PLN02336 phosphoethanolamine N 99.3 3.1E-11 6.7E-16 135.0 15.4 110 206-322 256-370 (475)
25 PRK08317 hypothetical protein; 99.3 9.6E-11 2.1E-15 117.3 16.9 114 202-322 5-125 (241)
26 PF12847 Methyltransf_18: Meth 99.3 1.7E-11 3.7E-16 109.2 10.0 99 219-321 2-111 (112)
27 PRK15068 tRNA mo(5)U34 methylt 99.3 4.1E-11 8.8E-16 127.9 14.2 109 206-321 112-226 (322)
28 PF13649 Methyltransf_25: Meth 99.3 5.1E-12 1.1E-16 111.5 6.0 91 222-315 1-101 (101)
29 KOG1540 Ubiquinone biosynthesi 99.2 3.4E-11 7.4E-16 121.7 11.2 104 216-322 98-215 (296)
30 COG2230 Cfa Cyclopropane fatty 99.2 3.5E-11 7.6E-16 125.0 11.6 125 190-322 46-177 (283)
31 PRK12335 tellurite resistance 99.2 5.2E-11 1.1E-15 125.0 12.9 98 220-321 122-223 (287)
32 TIGR02072 BioC biotin biosynth 99.2 7.4E-11 1.6E-15 118.4 13.3 112 206-322 21-136 (240)
33 PLN02490 MPBQ/MSBQ methyltrans 99.2 6.5E-11 1.4E-15 126.9 13.1 130 219-360 114-253 (340)
34 TIGR00452 methyltransferase, p 99.2 1.7E-10 3.6E-15 122.6 16.0 108 207-322 112-226 (314)
35 PRK15451 tRNA cmo(5)U34 methyl 99.2 1E-10 2.2E-15 120.1 13.8 117 201-322 39-165 (247)
36 TIGR00740 methyltransferase, p 99.2 6.4E-11 1.4E-15 120.7 12.1 99 219-322 54-162 (239)
37 PF13847 Methyltransf_31: Meth 99.2 5.4E-11 1.2E-15 112.7 10.1 98 219-322 4-111 (152)
38 PF07021 MetW: Methionine bios 99.2 7.9E-11 1.7E-15 115.7 11.2 143 206-360 5-164 (193)
39 COG4106 Tam Trans-aconitate me 99.2 9.7E-11 2.1E-15 116.0 11.2 208 207-470 21-231 (257)
40 TIGR03587 Pse_Me-ase pseudamin 99.2 1.5E-10 3.3E-15 115.8 12.3 97 219-321 44-142 (204)
41 PF03848 TehB: Tellurite resis 99.2 2.1E-10 4.5E-15 113.6 11.8 110 208-321 22-133 (192)
42 PRK11873 arsM arsenite S-adeno 99.2 1.7E-10 3.8E-15 119.7 11.7 97 219-322 78-184 (272)
43 smart00828 PKS_MT Methyltransf 99.2 2.2E-10 4.7E-15 115.2 12.1 96 221-322 2-105 (224)
44 PF08242 Methyltransf_12: Meth 99.1 1.8E-11 3.9E-16 107.3 3.0 93 223-317 1-99 (99)
45 KOG4300 Predicted methyltransf 99.1 1.5E-10 3.3E-15 113.8 8.9 97 221-322 79-183 (252)
46 PRK11705 cyclopropane fatty ac 99.1 3.6E-10 7.9E-15 123.4 12.9 112 203-322 154-268 (383)
47 TIGR03840 TMPT_Se_Te thiopurin 99.1 4.5E-10 9.7E-15 113.2 12.2 100 219-321 35-152 (213)
48 PRK00107 gidB 16S rRNA methylt 99.1 1.2E-09 2.7E-14 107.9 14.8 116 219-360 46-166 (187)
49 smart00138 MeTrc Methyltransfe 99.1 4.5E-10 9.6E-15 116.8 11.4 101 218-321 99-242 (264)
50 KOG1270 Methyltransferases [Co 99.1 2.3E-10 5.1E-15 116.4 8.4 136 176-322 45-196 (282)
51 TIGR02021 BchM-ChlM magnesium 99.1 5.6E-10 1.2E-14 112.2 11.2 155 200-361 37-204 (219)
52 PF05401 NodS: Nodulation prot 99.0 2.6E-10 5.7E-15 112.3 6.8 102 215-322 40-147 (201)
53 PRK06922 hypothetical protein; 99.0 8.1E-10 1.8E-14 125.7 11.7 101 219-322 419-538 (677)
54 PRK00121 trmB tRNA (guanine-N( 99.0 1.2E-09 2.7E-14 108.9 11.4 102 219-322 41-157 (202)
55 TIGR01934 MenG_MenH_UbiE ubiqu 99.0 2.9E-09 6.3E-14 105.9 13.5 112 204-322 27-144 (223)
56 PRK00216 ubiE ubiquinone/menaq 99.0 3.2E-09 6.8E-14 106.8 13.7 111 205-322 40-159 (239)
57 TIGR02469 CbiT precorrin-6Y C5 99.0 3.9E-09 8.5E-14 95.1 12.6 105 205-321 8-122 (124)
58 TIGR00406 prmA ribosomal prote 99.0 2.9E-09 6.4E-14 112.0 13.4 122 193-322 134-260 (288)
59 PF05175 MTS: Methyltransferas 99.0 7.3E-09 1.6E-13 100.5 15.0 119 199-322 14-141 (170)
60 PRK05134 bifunctional 3-demeth 99.0 2.5E-09 5.3E-14 108.3 11.7 112 205-323 37-153 (233)
61 PF08241 Methyltransf_11: Meth 99.0 2.7E-10 5.8E-15 97.4 3.8 92 482-578 1-95 (95)
62 PF06325 PrmA: Ribosomal prote 99.0 2.8E-09 6E-14 112.4 12.1 123 192-322 135-260 (295)
63 PRK00517 prmA ribosomal protei 99.0 1.8E-09 3.9E-14 111.2 10.6 131 197-360 98-235 (250)
64 PRK06202 hypothetical protein; 99.0 3.2E-09 6.9E-14 107.8 12.0 97 219-320 61-165 (232)
65 PRK13255 thiopurine S-methyltr 99.0 3.8E-09 8.3E-14 106.9 12.1 98 220-320 39-154 (218)
66 PLN02585 magnesium protoporphy 99.0 5.5E-09 1.2E-13 111.2 13.8 150 202-359 127-295 (315)
67 PF08003 Methyltransf_9: Prote 99.0 3.6E-09 7.9E-14 110.5 11.8 112 205-321 104-219 (315)
68 COG2264 PrmA Ribosomal protein 99.0 3.5E-09 7.6E-14 111.0 11.6 124 193-322 137-264 (300)
69 TIGR00138 gidB 16S rRNA methyl 99.0 1.3E-08 2.7E-13 100.2 14.5 95 219-321 43-142 (181)
70 PRK11188 rrmJ 23S rRNA methylt 98.9 3E-09 6.5E-14 106.9 9.0 92 219-322 52-166 (209)
71 PRK13944 protein-L-isoaspartat 98.9 9E-09 2E-13 102.9 12.3 103 204-321 60-173 (205)
72 PRK09489 rsmC 16S ribosomal RN 98.9 4.4E-09 9.6E-14 113.2 10.7 122 196-322 176-304 (342)
73 PRK08287 cobalt-precorrin-6Y C 98.9 1.7E-08 3.7E-13 99.1 13.9 131 202-359 17-152 (187)
74 TIGR00091 tRNA (guanine-N(7)-) 98.9 4.3E-09 9.3E-14 104.3 9.7 101 220-322 18-133 (194)
75 COG2813 RsmC 16S RNA G1207 met 98.9 5.7E-09 1.2E-13 109.0 10.7 123 195-322 137-267 (300)
76 KOG1541 Predicted protein carb 98.9 9.2E-09 2E-13 102.3 11.5 118 202-323 34-162 (270)
77 TIGR02081 metW methionine bios 98.9 1.4E-08 3E-13 100.4 12.4 87 220-313 15-104 (194)
78 TIGR01983 UbiG ubiquinone bios 98.9 3.3E-08 7.2E-13 99.1 15.1 99 219-322 46-150 (224)
79 TIGR00537 hemK_rel_arch HemK-r 98.9 1.5E-08 3.2E-13 98.8 12.2 98 220-322 21-141 (179)
80 PRK14121 tRNA (guanine-N(7)-)- 98.9 1.2E-08 2.7E-13 110.8 12.3 100 219-321 123-235 (390)
81 PRK15001 SAM-dependent 23S rib 98.9 1.9E-08 4.2E-13 109.4 13.2 115 199-321 211-340 (378)
82 PRK13942 protein-L-isoaspartat 98.9 1.6E-08 3.4E-13 101.8 11.5 104 203-321 63-176 (212)
83 PRK07580 Mg-protoporphyrin IX 98.9 1.6E-08 3.5E-13 101.7 11.6 111 202-318 46-163 (230)
84 TIGR00080 pimt protein-L-isoas 98.8 2.5E-08 5.4E-13 100.3 12.2 107 204-321 65-177 (215)
85 TIGR02716 C20_methyl_CrtF C-20 98.8 2.2E-08 4.8E-13 105.9 12.4 109 206-322 139-255 (306)
86 TIGR03534 RF_mod_PrmC protein- 98.8 7.5E-08 1.6E-12 98.0 15.1 112 201-321 73-217 (251)
87 COG4976 Predicted methyltransf 98.8 4.6E-09 1E-13 104.9 5.6 135 216-361 123-263 (287)
88 KOG3010 Methyltransferase [Gen 98.8 9.4E-09 2E-13 103.6 7.5 93 220-320 35-136 (261)
89 PRK14967 putative methyltransf 98.8 6.7E-08 1.4E-12 97.7 13.9 101 220-322 38-160 (223)
90 TIGR01177 conserved hypothetic 98.8 4.9E-08 1.1E-12 104.6 13.1 114 206-322 172-295 (329)
91 PRK00107 gidB 16S rRNA methylt 98.8 6.1E-08 1.3E-12 95.9 12.8 152 456-620 27-187 (187)
92 PRK13256 thiopurine S-methyltr 98.8 6.4E-08 1.4E-12 98.4 13.2 101 219-322 44-164 (226)
93 PRK04266 fibrillarin; Provisio 98.8 9.2E-08 2E-12 97.4 14.2 133 211-360 67-207 (226)
94 PLN03075 nicotianamine synthas 98.8 3.8E-08 8.3E-13 103.5 11.0 103 218-321 123-233 (296)
95 PF13659 Methyltransf_26: Meth 98.8 2.3E-08 5E-13 89.8 8.2 100 220-322 2-116 (117)
96 TIGR03438 probable methyltrans 98.8 5.6E-08 1.2E-12 102.9 11.9 101 219-322 64-178 (301)
97 KOG2361 Predicted methyltransf 98.7 6.2E-08 1.3E-12 97.8 11.3 120 202-324 55-186 (264)
98 PRK14968 putative methyltransf 98.7 2.4E-07 5.3E-12 89.9 14.8 100 219-322 24-149 (188)
99 PRK00312 pcm protein-L-isoaspa 98.7 1.1E-07 2.4E-12 95.2 11.5 104 204-322 66-176 (212)
100 PTZ00146 fibrillarin; Provisio 98.7 1.7E-07 3.8E-12 98.3 13.0 99 214-320 130-236 (293)
101 PRK11783 rlmL 23S rRNA m(2)G24 98.7 2.8E-07 6.1E-12 108.2 16.0 124 478-603 539-679 (702)
102 PTZ00098 phosphoethanolamine N 98.7 1.6E-08 3.5E-13 105.1 5.0 127 449-581 8-157 (263)
103 cd02440 AdoMet_MTases S-adenos 98.7 1.3E-07 2.8E-12 80.1 9.7 94 221-320 1-103 (107)
104 PRK00377 cbiT cobalt-precorrin 98.7 3.9E-07 8.4E-12 90.5 14.1 104 211-322 35-146 (198)
105 PRK07402 precorrin-6B methylas 98.7 2.6E-07 5.6E-12 91.5 12.6 112 202-322 26-143 (196)
106 PRK14966 unknown domain/N5-glu 98.6 6.1E-07 1.3E-11 98.4 15.7 137 201-360 238-402 (423)
107 PRK09328 N5-glutamine S-adenos 98.6 7.7E-07 1.7E-11 92.2 15.8 112 202-321 94-238 (275)
108 COG4123 Predicted O-methyltran 98.6 4E-07 8.7E-12 93.4 13.2 117 197-322 27-171 (248)
109 PF05891 Methyltransf_PK: AdoM 98.6 4.5E-08 9.6E-13 98.1 6.0 140 218-361 55-199 (218)
110 PF13489 Methyltransf_23: Meth 98.6 1.2E-08 2.5E-13 96.1 1.5 96 476-582 21-117 (161)
111 PLN02233 ubiquinone biosynthes 98.6 8.8E-08 1.9E-12 99.4 7.7 98 478-580 74-182 (261)
112 TIGR03533 L3_gln_methyl protei 98.6 1.4E-06 3.1E-11 91.5 16.7 99 220-322 123-252 (284)
113 PRK15001 SAM-dependent 23S rib 98.6 4.5E-06 9.8E-11 91.1 20.8 129 479-619 230-373 (378)
114 COG2226 UbiE Methylase involve 98.6 1E-07 2.2E-12 97.4 7.1 99 477-580 51-156 (238)
115 TIGR00438 rrmJ cell division p 98.6 5.8E-07 1.3E-11 88.4 12.2 93 219-322 33-147 (188)
116 PF05148 Methyltransf_8: Hypot 98.6 6.2E-07 1.3E-11 89.4 12.3 136 205-373 60-200 (219)
117 PF06080 DUF938: Protein of un 98.6 1.1E-06 2.3E-11 87.8 13.6 160 201-370 11-204 (204)
118 PLN02232 ubiquinone biosynthes 98.6 1.6E-07 3.4E-12 90.4 7.6 71 250-322 4-82 (160)
119 PRK14103 trans-aconitate 2-met 98.5 1.3E-07 2.8E-12 97.5 7.2 106 467-580 20-126 (255)
120 PF01135 PCMT: Protein-L-isoas 98.5 3.1E-07 6.8E-12 92.4 9.5 109 203-321 59-172 (209)
121 PF02353 CMAS: Mycolic acid cy 98.5 1.1E-07 2.3E-12 99.6 5.6 113 462-579 48-165 (273)
122 TIGR00536 hemK_fam HemK family 98.5 2.2E-06 4.8E-11 90.0 15.4 97 220-322 116-245 (284)
123 PF05219 DREV: DREV methyltran 98.5 1.2E-06 2.6E-11 90.0 12.8 153 190-354 64-224 (265)
124 KOG1271 Methyltransferases [Ge 98.5 1.3E-06 2.8E-11 84.9 12.0 101 221-322 70-182 (227)
125 PF00891 Methyltransf_2: O-met 98.5 8.2E-07 1.8E-11 90.6 11.2 96 219-322 101-200 (241)
126 smart00650 rADc Ribosomal RNA 98.5 6.5E-07 1.4E-11 86.6 9.6 103 206-320 3-112 (169)
127 KOG2940 Predicted methyltransf 98.5 1.4E-07 3E-12 94.4 4.9 96 219-321 73-174 (325)
128 TIGR03704 PrmC_rel_meth putati 98.5 4.5E-06 9.7E-11 86.3 16.2 117 200-322 69-217 (251)
129 PF12847 Methyltransf_18: Meth 98.5 1.2E-07 2.5E-12 84.4 3.8 98 478-580 2-111 (112)
130 PRK13943 protein-L-isoaspartat 98.5 7.7E-07 1.7E-11 95.2 10.6 107 204-321 68-180 (322)
131 COG2518 Pcm Protein-L-isoaspar 98.5 1.4E-06 2.9E-11 87.2 11.4 104 205-321 61-169 (209)
132 PF01209 Ubie_methyltran: ubiE 98.5 1.8E-07 3.9E-12 95.7 5.3 114 456-580 33-153 (233)
133 PLN02244 tocopherol O-methyltr 98.4 3.6E-07 7.9E-12 98.4 7.9 97 477-580 118-223 (340)
134 PRK10258 biotin biosynthesis p 98.4 4.6E-07 1E-11 92.9 8.3 97 476-580 41-140 (251)
135 PF03291 Pox_MCEL: mRNA cappin 98.4 6.7E-07 1.4E-11 96.0 9.7 105 218-322 62-187 (331)
136 PRK11805 N5-glutamine S-adenos 98.4 2.8E-06 6.1E-11 90.4 14.1 97 220-322 135-264 (307)
137 KOG3045 Predicted RNA methylas 98.4 1.7E-06 3.8E-11 88.1 11.5 130 208-372 171-305 (325)
138 PRK09489 rsmC 16S ribosomal RN 98.4 3.5E-05 7.7E-10 83.2 22.0 130 480-620 199-337 (342)
139 PF05724 TPMT: Thiopurine S-me 98.4 3.1E-06 6.7E-11 85.8 12.8 99 219-320 38-154 (218)
140 PHA03411 putative methyltransf 98.4 2E-06 4.4E-11 89.5 11.7 98 219-320 65-182 (279)
141 PRK00377 cbiT cobalt-precorrin 98.4 1.5E-06 3.3E-11 86.2 9.9 150 443-601 7-167 (198)
142 PRK11088 rrmA 23S rRNA methylt 98.4 5E-07 1.1E-11 94.1 6.7 103 477-591 85-193 (272)
143 PRK08287 cobalt-precorrin-6Y C 98.4 2.5E-06 5.5E-11 83.7 10.7 115 477-599 31-151 (187)
144 TIGR00477 tehB tellurite resis 98.4 5.4E-07 1.2E-11 89.4 6.0 96 478-578 31-131 (195)
145 PRK10901 16S rRNA methyltransf 98.4 3.9E-06 8.5E-11 93.2 13.3 111 207-322 235-373 (427)
146 TIGR02752 MenG_heptapren 2-hep 98.3 1.8E-06 3.8E-11 87.2 9.6 98 478-581 46-152 (231)
147 COG4976 Predicted methyltransf 98.3 4.7E-07 1E-11 90.8 5.2 145 469-620 118-286 (287)
148 PRK15068 tRNA mo(5)U34 methylt 98.3 7.9E-07 1.7E-11 95.2 7.3 96 478-579 123-225 (322)
149 PRK11207 tellurite resistance 98.3 7.2E-07 1.6E-11 88.7 6.4 95 478-578 31-132 (197)
150 PRK12335 tellurite resistance 98.3 8.6E-07 1.9E-11 93.2 7.3 116 479-602 122-257 (287)
151 PRK14901 16S rRNA methyltransf 98.3 2.9E-06 6.2E-11 94.4 11.6 113 207-322 243-385 (434)
152 COG2242 CobL Precorrin-6B meth 98.3 1.1E-05 2.4E-10 79.3 14.2 106 208-321 26-135 (187)
153 TIGR00138 gidB 16S rRNA methyl 98.3 1.4E-06 3.1E-11 85.7 8.0 131 456-600 25-163 (181)
154 PRK00811 spermidine synthase; 98.3 6.4E-06 1.4E-10 86.7 13.4 98 218-321 76-191 (283)
155 PRK11705 cyclopropane fatty ac 98.3 7.9E-07 1.7E-11 97.4 6.6 99 477-580 167-267 (383)
156 PHA03412 putative methyltransf 98.3 3.8E-06 8.2E-11 85.8 11.0 94 219-316 50-158 (241)
157 PF02390 Methyltransf_4: Putat 98.3 3.2E-06 7E-11 84.2 10.3 100 221-321 20-133 (195)
158 TIGR00452 methyltransferase, p 98.3 1.5E-06 3.3E-11 92.6 8.5 117 456-579 102-224 (314)
159 smart00828 PKS_MT Methyltransf 98.3 6E-07 1.3E-11 90.2 5.0 96 479-581 1-105 (224)
160 PRK11036 putative S-adenosyl-L 98.3 4.8E-07 1E-11 93.3 4.3 97 478-580 45-149 (255)
161 TIGR00563 rsmB ribosomal RNA s 98.3 6.1E-06 1.3E-10 91.6 12.9 114 206-322 228-369 (426)
162 PRK04457 spermidine synthase; 98.3 7.8E-06 1.7E-10 85.1 12.5 96 219-320 67-176 (262)
163 PLN02396 hexaprenyldihydroxybe 98.3 1.3E-06 2.8E-11 93.5 6.6 97 478-580 132-235 (322)
164 PRK14904 16S rRNA methyltransf 98.3 3E-06 6.5E-11 94.6 9.6 109 210-322 244-378 (445)
165 PRK01683 trans-aconitate 2-met 98.2 2.1E-06 4.6E-11 88.3 7.4 118 476-600 30-154 (258)
166 TIGR00406 prmA ribosomal prote 98.2 2.9E-06 6.3E-11 89.4 8.3 115 479-602 161-281 (288)
167 TIGR00537 hemK_rel_arch HemK-r 98.2 5E-06 1.1E-10 81.1 9.4 120 479-604 21-165 (179)
168 KOG1975 mRNA cap methyltransfe 98.2 2.9E-06 6.4E-11 88.9 8.0 104 219-322 118-238 (389)
169 TIGR00446 nop2p NOL1/NOP2/sun 98.2 2.4E-06 5.3E-11 88.8 7.5 105 211-322 66-200 (264)
170 PRK13168 rumA 23S rRNA m(5)U19 98.2 7.1E-06 1.5E-10 91.5 11.5 113 201-324 282-403 (443)
171 PRK08317 hypothetical protein; 98.2 2.8E-06 6.2E-11 84.9 7.5 102 476-580 18-124 (241)
172 PRK14903 16S rRNA methyltransf 98.2 7.1E-06 1.5E-10 91.3 11.2 112 208-322 229-367 (431)
173 PRK05785 hypothetical protein; 98.2 2.8E-06 6.1E-11 86.4 7.0 106 456-574 35-141 (226)
174 PF01739 CheR: CheR methyltran 98.2 9.2E-06 2E-10 81.1 10.0 101 218-321 31-175 (196)
175 COG0220 Predicted S-adenosylme 98.2 1.3E-05 2.8E-10 81.8 11.1 99 221-321 51-164 (227)
176 PRK10909 rsmD 16S rRNA m(2)G96 98.2 2.9E-05 6.3E-10 77.7 13.4 119 198-322 34-160 (199)
177 TIGR00740 methyltransferase, p 98.2 1.7E-06 3.8E-11 88.1 4.7 103 478-581 54-162 (239)
178 PRK14902 16S rRNA methyltransf 98.2 5.1E-06 1.1E-10 92.7 8.8 112 207-322 241-380 (444)
179 PF05401 NodS: Nodulation prot 98.1 6.3E-06 1.4E-10 81.6 8.0 141 472-618 39-193 (201)
180 PRK14968 putative methyltransf 98.1 8.4E-06 1.8E-10 79.1 8.5 136 478-619 24-188 (188)
181 TIGR00478 tly hemolysin TlyA f 98.1 4.5E-05 9.8E-10 77.9 14.2 126 218-359 75-213 (228)
182 PRK00517 prmA ribosomal protei 98.1 1.3E-05 2.8E-10 82.7 10.2 127 478-620 120-250 (250)
183 PRK15451 tRNA cmo(5)U34 methyl 98.1 2.7E-06 5.8E-11 87.5 5.0 101 478-581 57-165 (247)
184 COG2890 HemK Methylase of poly 98.1 5.9E-05 1.3E-09 79.3 14.9 94 221-321 113-238 (280)
185 PRK01581 speE spermidine synth 98.1 1.7E-05 3.6E-10 85.8 11.0 99 217-321 149-268 (374)
186 COG2519 GCD14 tRNA(1-methylade 98.1 4.4E-05 9.5E-10 78.3 13.3 104 207-323 85-197 (256)
187 PRK00121 trmB tRNA (guanine-N( 98.1 6.2E-06 1.3E-10 82.4 7.1 123 477-601 40-178 (202)
188 PF07942 N2227: N2227-like pro 98.1 4.7E-05 1E-09 79.4 13.7 155 202-363 38-242 (270)
189 TIGR00417 speE spermidine synt 98.1 1.9E-05 4.2E-10 82.4 10.9 98 218-321 72-186 (270)
190 TIGR02072 BioC biotin biosynth 98.1 8.5E-06 1.8E-10 81.7 7.5 98 478-580 35-135 (240)
191 PRK10611 chemotaxis methyltran 98.0 2.5E-05 5.5E-10 82.3 10.6 99 220-321 117-262 (287)
192 smart00138 MeTrc Methyltransfe 98.0 9E-06 1.9E-10 84.7 7.1 129 449-582 71-244 (264)
193 PRK03522 rumB 23S rRNA methylu 98.0 4E-05 8.7E-10 81.8 11.2 112 203-324 160-277 (315)
194 PRK11873 arsM arsenite S-adeno 98.0 7.8E-06 1.7E-10 84.9 5.5 97 478-580 78-183 (272)
195 TIGR01983 UbiG ubiquinone bios 98.0 1.8E-05 4E-10 79.3 7.9 124 451-580 19-149 (224)
196 PLN02366 spermidine synthase 97.9 5.4E-05 1.2E-09 80.6 11.3 97 219-321 92-206 (308)
197 PF08242 Methyltransf_12: Meth 97.9 5.6E-06 1.2E-10 72.4 3.1 91 482-576 1-99 (99)
198 PRK03612 spermidine synthase; 97.9 7.7E-05 1.7E-09 85.0 13.2 98 218-321 297-415 (521)
199 PF08704 GCD14: tRNA methyltra 97.9 0.00012 2.6E-09 75.6 13.4 106 205-322 29-147 (247)
200 PLN02781 Probable caffeoyl-CoA 97.9 4.8E-05 1E-09 77.9 10.2 97 219-321 69-178 (234)
201 COG2230 Cfa Cyclopropane fatty 97.9 1.8E-05 3.9E-10 82.8 7.1 113 462-579 58-175 (283)
202 TIGR01934 MenG_MenH_UbiE ubiqu 97.9 2.8E-05 6E-10 77.3 8.2 99 477-580 39-143 (223)
203 TIGR00479 rumA 23S rRNA (uraci 97.9 4.4E-05 9.6E-10 84.8 10.6 109 202-322 278-397 (431)
204 PF13847 Methyltransf_31: Meth 97.9 8.8E-06 1.9E-10 77.0 4.3 99 477-582 3-112 (152)
205 PF10294 Methyltransf_16: Puta 97.9 5.8E-05 1.3E-09 73.7 10.0 101 218-322 45-157 (173)
206 COG1041 Predicted DNA modifica 97.9 5.2E-05 1.1E-09 81.1 10.2 114 204-322 185-311 (347)
207 PRK05134 bifunctional 3-demeth 97.9 1.5E-05 3.3E-10 80.6 5.2 99 477-581 48-152 (233)
208 TIGR03587 Pse_Me-ase pseudamin 97.9 2.9E-05 6.3E-10 77.9 7.1 96 478-580 44-142 (204)
209 PRK07402 precorrin-6B methylas 97.9 8E-05 1.7E-09 73.7 10.0 111 477-596 40-159 (196)
210 KOG2899 Predicted methyltransf 97.8 5.8E-05 1.3E-09 76.6 8.7 98 218-320 58-208 (288)
211 PRK04266 fibrillarin; Provisio 97.8 0.00011 2.4E-09 74.9 10.9 93 478-579 73-175 (226)
212 TIGR00091 tRNA (guanine-N(7)-) 97.8 2.8E-05 6E-10 77.1 6.1 121 478-599 17-153 (194)
213 PLN02672 methionine S-methyltr 97.8 0.00042 9.2E-09 84.3 16.7 102 219-321 119-278 (1082)
214 COG0500 SmtA SAM-dependent met 97.8 0.00018 3.8E-09 63.1 10.2 95 222-322 52-156 (257)
215 PRK06202 hypothetical protein; 97.8 6E-05 1.3E-09 76.5 8.2 102 476-580 59-166 (232)
216 PRK00274 ksgA 16S ribosomal RN 97.8 6.9E-05 1.5E-09 78.4 8.3 82 203-291 29-114 (272)
217 TIGR02085 meth_trns_rumB 23S r 97.8 0.00023 5E-09 77.9 12.6 95 220-322 235-335 (374)
218 PLN02490 MPBQ/MSBQ methyltrans 97.8 2.9E-05 6.2E-10 83.7 5.4 117 478-600 114-252 (340)
219 PRK15128 23S rRNA m(5)C1962 me 97.8 0.00015 3.3E-09 79.9 11.2 102 219-321 221-339 (396)
220 TIGR00438 rrmJ cell division p 97.8 3.6E-05 7.7E-10 75.7 5.7 128 478-618 33-186 (188)
221 PRK14896 ksgA 16S ribosomal RN 97.8 0.00012 2.6E-09 75.9 9.8 84 202-292 15-101 (258)
222 PRK14121 tRNA (guanine-N(7)-)- 97.7 7.2E-05 1.6E-09 81.8 8.3 120 477-599 122-256 (390)
223 PRK14967 putative methyltransf 97.7 7.5E-05 1.6E-09 75.5 7.9 120 478-602 37-182 (223)
224 PRK01544 bifunctional N5-gluta 97.7 9.1E-05 2E-09 84.1 9.4 102 218-321 347-462 (506)
225 PRK11783 rlmL 23S rRNA m(2)G24 97.7 5.2E-05 1.1E-09 89.3 7.7 102 219-322 539-657 (702)
226 PRK09328 N5-glutamine S-adenos 97.7 9.5E-05 2.1E-09 76.6 8.7 136 478-619 109-275 (275)
227 PRK06922 hypothetical protein; 97.7 3.3E-05 7.1E-10 88.8 5.6 102 478-581 419-538 (677)
228 COG1352 CheR Methylase of chem 97.7 0.00015 3.1E-09 75.8 9.9 104 218-321 96-241 (268)
229 KOG3178 Hydroxyindole-O-methyl 97.7 0.00014 2.9E-09 77.8 9.8 97 219-322 178-276 (342)
230 PRK13942 protein-L-isoaspartat 97.7 4.7E-05 1E-09 76.7 6.1 94 476-580 75-176 (212)
231 TIGR00755 ksgA dimethyladenosi 97.7 0.00018 4E-09 74.2 10.4 81 203-292 16-104 (253)
232 COG2521 Predicted archaeal met 97.7 0.00017 3.7E-09 73.0 9.5 145 204-361 120-275 (287)
233 KOG1540 Ubiquinone biosynthesi 97.7 0.00011 2.3E-09 75.3 8.1 118 471-594 95-229 (296)
234 cd02440 AdoMet_MTases S-adenos 97.7 6.3E-05 1.4E-09 63.4 5.6 96 480-579 1-103 (107)
235 PRK11727 23S rRNA mA1618 methy 97.7 0.00045 9.7E-09 74.0 13.0 93 201-293 91-200 (321)
236 COG2227 UbiG 2-polyprenyl-3-me 97.7 5.8E-05 1.3E-09 76.9 5.6 97 478-581 60-162 (243)
237 KOG2904 Predicted methyltransf 97.7 0.00047 1E-08 71.3 12.1 119 201-322 130-286 (328)
238 COG3963 Phospholipid N-methylt 97.7 0.00016 3.5E-09 69.8 8.1 116 204-321 36-156 (194)
239 KOG1331 Predicted methyltransf 97.7 3.4E-05 7.3E-10 80.1 3.7 97 219-321 46-143 (293)
240 TIGR03534 RF_mod_PrmC protein- 97.6 0.00014 3E-09 74.0 8.0 119 479-600 89-237 (251)
241 KOG1499 Protein arginine N-met 97.6 0.00018 4E-09 76.7 8.9 100 218-319 60-165 (346)
242 KOG3010 Methyltransferase [Gen 97.6 5.4E-05 1.2E-09 76.9 4.5 114 477-598 33-158 (261)
243 TIGR00536 hemK_fam HemK family 97.6 0.0002 4.3E-09 75.3 9.0 135 479-620 116-283 (284)
244 PRK00216 ubiE ubiquinone/menaq 97.6 0.00017 3.7E-09 72.4 8.2 98 478-580 52-158 (239)
245 TIGR02021 BchM-ChlM magnesium 97.6 0.00011 2.5E-09 73.8 6.8 101 477-581 55-159 (219)
246 PF13649 Methyltransf_25: Meth 97.6 1.6E-05 3.4E-10 70.1 0.4 94 481-574 1-101 (101)
247 TIGR03533 L3_gln_methyl protei 97.6 0.00018 3.9E-09 75.8 8.4 121 478-604 122-274 (284)
248 PRK11805 N5-glutamine S-adenos 97.6 0.00018 3.8E-09 76.7 8.1 111 479-595 135-277 (307)
249 PF03848 TehB: Tellurite resis 97.6 8.1E-05 1.8E-09 74.0 5.1 117 478-602 31-167 (192)
250 TIGR02469 CbiT precorrin-6Y C5 97.6 0.00013 2.9E-09 65.4 6.1 94 478-579 20-121 (124)
251 TIGR03704 PrmC_rel_meth putati 97.6 0.00016 3.6E-09 74.7 7.3 127 478-607 87-243 (251)
252 KOG1269 SAM-dependent methyltr 97.6 0.00012 2.5E-09 79.7 6.4 98 221-320 113-214 (364)
253 PTZ00146 fibrillarin; Provisio 97.6 0.00041 8.9E-09 73.2 10.2 95 478-579 133-236 (293)
254 PF11968 DUF3321: Putative met 97.6 0.00047 1E-08 69.4 10.1 118 220-362 53-180 (219)
255 PRK07580 Mg-protoporphyrin IX 97.6 0.00028 6.1E-09 70.9 8.7 100 477-580 63-166 (230)
256 PF05219 DREV: DREV methyltran 97.5 0.00016 3.4E-09 74.6 6.8 92 477-579 94-187 (265)
257 TIGR00080 pimt protein-L-isoas 97.5 8.5E-05 1.8E-09 74.7 4.7 93 477-579 77-176 (215)
258 PRK04148 hypothetical protein; 97.5 0.00047 1E-08 64.7 9.1 101 206-320 6-108 (134)
259 PRK11188 rrmJ 23S rRNA methylt 97.5 0.00023 5.1E-09 71.6 7.7 135 478-619 52-206 (209)
260 PF07021 MetW: Methionine bios 97.5 9.4E-05 2E-09 73.2 4.7 99 469-579 8-108 (193)
261 PLN02476 O-methyltransferase 97.5 0.00058 1.2E-08 71.7 10.8 97 219-321 119-228 (278)
262 PRK14966 unknown domain/N5-glu 97.5 0.00036 7.7E-09 77.0 9.6 138 479-620 253-419 (423)
263 TIGR02081 metW methionine bios 97.5 0.0001 2.3E-09 72.8 5.0 89 479-572 15-104 (194)
264 COG2263 Predicted RNA methylas 97.5 0.00098 2.1E-08 65.8 11.4 89 218-310 45-136 (198)
265 TIGR00095 RNA methyltransferas 97.5 0.002 4.4E-08 63.9 13.9 129 188-322 21-160 (189)
266 PF01596 Methyltransf_3: O-met 97.5 0.00063 1.4E-08 68.4 10.4 96 220-321 47-155 (205)
267 COG4122 Predicted O-methyltran 97.5 0.0018 3.8E-08 65.8 13.2 93 219-321 60-166 (219)
268 KOG1661 Protein-L-isoaspartate 97.5 0.00053 1.1E-08 68.5 9.1 100 208-320 72-192 (237)
269 COG2890 HemK Methylase of poly 97.4 0.00052 1.1E-08 72.2 9.4 159 451-619 92-276 (280)
270 PF05148 Methyltransf_8: Hypot 97.4 0.0014 3E-08 65.9 11.7 122 476-621 71-199 (219)
271 TIGR02716 C20_methyl_CrtF C-20 97.4 0.00024 5.3E-09 75.2 6.2 101 476-581 148-255 (306)
272 PF05185 PRMT5: PRMT5 arginine 97.4 0.00061 1.3E-08 76.2 9.3 98 219-318 187-294 (448)
273 PTZ00338 dimethyladenosine tra 97.4 0.00049 1.1E-08 72.9 8.2 89 203-296 23-114 (294)
274 COG4106 Tam Trans-aconitate me 97.4 0.00045 9.7E-09 69.3 7.2 147 467-624 21-191 (257)
275 PRK13944 protein-L-isoaspartat 97.4 0.00029 6.4E-09 70.5 6.0 90 478-580 73-173 (205)
276 PRK00312 pcm protein-L-isoaspa 97.3 0.00038 8.2E-09 69.7 6.6 90 476-579 77-174 (212)
277 COG2813 RsmC 16S RNA G1207 met 97.3 0.015 3.3E-07 61.4 17.7 129 480-619 161-299 (300)
278 PF01170 UPF0020: Putative RNA 97.2 0.0018 3.9E-08 63.7 9.7 111 204-320 16-150 (179)
279 COG2264 PrmA Ribosomal protein 97.2 0.002 4.3E-08 68.2 10.5 121 477-605 162-289 (300)
280 PRK04338 N(2),N(2)-dimethylgua 97.2 0.0026 5.6E-08 69.9 11.8 95 220-321 59-158 (382)
281 PF06325 PrmA: Ribosomal prote 97.2 0.00071 1.5E-08 71.7 7.2 128 478-620 162-295 (295)
282 KOG3987 Uncharacterized conser 97.2 0.00033 7.2E-09 69.7 4.2 119 190-320 84-206 (288)
283 PRK04457 spermidine synthase; 97.2 0.0014 3.1E-08 68.2 9.2 138 476-619 65-216 (262)
284 PF05175 MTS: Methyltransferas 97.2 0.00041 8.8E-09 67.4 4.7 114 478-593 32-155 (170)
285 COG4123 Predicted O-methyltran 97.2 0.0021 4.6E-08 66.3 10.1 121 477-600 44-190 (248)
286 PLN02823 spermine synthase 97.2 0.0017 3.7E-08 70.1 9.9 98 218-321 103-220 (336)
287 TIGR03840 TMPT_Se_Te thiopurin 97.1 0.00069 1.5E-08 68.5 5.8 97 478-578 35-150 (213)
288 TIGR03438 probable methyltrans 97.1 0.00045 9.8E-09 73.3 4.7 100 478-579 64-176 (301)
289 KOG3191 Predicted N6-DNA-methy 97.1 0.0059 1.3E-07 59.9 11.3 102 219-322 44-169 (209)
290 PF01728 FtsJ: FtsJ-like methy 97.1 0.0022 4.7E-08 62.6 8.4 106 205-322 9-140 (181)
291 PRK13255 thiopurine S-methyltr 97.1 0.00077 1.7E-08 68.4 5.4 96 479-578 39-153 (218)
292 PF12147 Methyltransf_20: Puta 97.1 0.0072 1.6E-07 63.4 12.5 197 147-361 70-296 (311)
293 KOG2352 Predicted spermine/spe 97.0 0.0038 8.3E-08 69.4 10.7 101 221-322 51-162 (482)
294 PLN02589 caffeoyl-CoA O-methyl 97.0 0.0024 5.2E-08 66.1 8.6 91 220-320 81-189 (247)
295 PF02475 Met_10: Met-10+ like- 97.0 0.003 6.6E-08 63.3 9.0 125 182-318 69-199 (200)
296 PF02390 Methyltransf_4: Putat 97.0 0.00082 1.8E-08 67.1 4.8 119 478-600 18-156 (195)
297 TIGR01177 conserved hypothetic 97.0 0.0014 3E-08 70.4 6.9 114 478-597 183-309 (329)
298 PF08003 Methyltransf_9: Prote 97.0 0.0025 5.5E-08 67.3 8.2 98 476-579 114-218 (315)
299 PF01728 FtsJ: FtsJ-like methy 96.9 0.0027 5.9E-08 61.9 8.0 132 476-619 22-180 (181)
300 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.9 0.0021 4.6E-08 66.7 7.3 117 204-321 42-199 (256)
301 PF02384 N6_Mtase: N-6 DNA Met 96.9 0.0024 5.2E-08 67.7 8.0 118 202-322 32-184 (311)
302 PF13659 Methyltransf_26: Meth 96.9 0.00034 7.3E-09 62.6 1.2 99 479-579 2-114 (117)
303 KOG1541 Predicted protein carb 96.9 0.004 8.7E-08 62.8 8.8 139 476-617 49-201 (270)
304 COG2242 CobL Precorrin-6B meth 96.9 0.0092 2E-07 58.9 11.0 144 444-600 2-157 (187)
305 TIGR00563 rsmB ribosomal RNA s 96.9 0.0019 4.2E-08 71.8 7.1 101 477-579 238-367 (426)
306 TIGR02143 trmA_only tRNA (urac 96.8 0.0047 1E-07 67.2 9.6 111 201-322 183-312 (353)
307 PRK05031 tRNA (uracil-5-)-meth 96.8 0.005 1.1E-07 67.2 9.8 110 202-322 193-321 (362)
308 PF09243 Rsm22: Mitochondrial 96.8 0.01 2.2E-07 62.4 11.7 100 218-322 33-140 (274)
309 PF02527 GidB: rRNA small subu 96.8 0.03 6.6E-07 55.5 14.1 91 221-320 51-147 (184)
310 PF03602 Cons_hypoth95: Conser 96.8 0.004 8.7E-08 61.5 7.9 129 185-322 10-154 (183)
311 KOG4300 Predicted methyltransf 96.8 0.0065 1.4E-07 60.8 9.1 99 478-582 77-184 (252)
312 PRK11933 yebU rRNA (cytosine-C 96.8 0.0093 2E-07 67.2 11.4 99 219-322 114-243 (470)
313 COG4627 Uncharacterized protei 96.7 0.00028 6.1E-09 67.3 -1.0 54 273-326 38-91 (185)
314 PF00891 Methyltransf_2: O-met 96.6 0.0031 6.8E-08 64.3 6.0 99 472-581 96-200 (241)
315 TIGR00417 speE spermidine synt 96.6 0.012 2.6E-07 61.5 10.4 142 476-619 71-232 (270)
316 TIGR00446 nop2p NOL1/NOP2/sun 96.6 0.0046 9.9E-08 64.4 7.1 98 478-579 72-198 (264)
317 PRK10901 16S rRNA methyltransf 96.6 0.0043 9.4E-08 69.1 7.3 103 477-580 244-372 (427)
318 PRK01581 speE spermidine synth 96.6 0.015 3.2E-07 63.4 10.7 147 476-624 149-318 (374)
319 PRK00811 spermidine synthase; 96.6 0.013 2.8E-07 61.8 10.2 142 476-620 75-238 (283)
320 COG0421 SpeE Spermidine syntha 96.5 0.0089 1.9E-07 63.0 8.8 100 216-321 74-190 (282)
321 PRK14903 16S rRNA methyltransf 96.5 0.005 1.1E-07 68.7 7.1 99 478-579 238-365 (431)
322 PRK11760 putative 23S rRNA C24 96.5 0.027 5.9E-07 60.7 12.0 92 218-320 211-304 (357)
323 COG0030 KsgA Dimethyladenosine 96.5 0.012 2.6E-07 61.2 9.1 83 203-292 17-105 (259)
324 PRK00536 speE spermidine synth 96.5 0.026 5.7E-07 58.9 11.5 91 216-321 70-171 (262)
325 PLN02585 magnesium protoporphy 96.4 0.0069 1.5E-07 64.9 7.3 97 478-580 145-249 (315)
326 KOG3201 Uncharacterized conser 96.4 0.0015 3.2E-08 62.9 1.8 135 219-371 30-175 (201)
327 PRK14902 16S rRNA methyltransf 96.4 0.0056 1.2E-07 68.5 6.7 100 478-579 251-378 (444)
328 TIGR02987 met_A_Alw26 type II 96.4 0.02 4.2E-07 65.5 11.1 74 219-292 32-122 (524)
329 TIGR03439 methyl_EasF probable 96.4 0.023 4.9E-07 61.1 10.6 99 220-321 78-197 (319)
330 KOG2798 Putative trehalase [Ca 96.4 0.029 6.2E-07 59.4 10.9 155 202-362 132-336 (369)
331 TIGR00478 tly hemolysin TlyA f 96.3 0.012 2.6E-07 60.2 8.1 108 477-600 75-213 (228)
332 COG0293 FtsJ 23S rRNA methylas 96.3 0.031 6.8E-07 56.2 10.8 93 219-322 46-160 (205)
333 PRK14904 16S rRNA methyltransf 96.3 0.0073 1.6E-07 67.6 6.7 100 478-580 251-377 (445)
334 PF08123 DOT1: Histone methyla 96.3 0.0094 2E-07 60.0 6.8 118 198-320 24-157 (205)
335 KOG1270 Methyltransferases [Co 96.3 0.0047 1E-07 63.8 4.6 99 478-582 90-197 (282)
336 PLN03075 nicotianamine synthas 96.3 0.025 5.5E-07 60.0 10.1 137 477-622 123-277 (296)
337 COG0500 SmtA SAM-dependent met 96.3 0.017 3.7E-07 50.3 7.6 95 481-582 52-157 (257)
338 COG2265 TrmA SAM-dependent met 96.2 0.022 4.7E-07 63.6 10.0 114 202-323 279-398 (432)
339 PRK13943 protein-L-isoaspartat 96.2 0.0072 1.6E-07 64.9 5.8 93 478-580 81-180 (322)
340 COG0220 Predicted S-adenosylme 96.1 0.011 2.4E-07 60.5 6.5 113 479-594 50-180 (227)
341 PF01564 Spermine_synth: Sperm 96.1 0.018 4E-07 59.5 8.2 98 218-321 76-191 (246)
342 KOG3045 Predicted RNA methylas 96.1 0.029 6.3E-07 58.0 9.3 107 477-605 180-292 (325)
343 KOG1500 Protein arginine N-met 96.1 0.02 4.2E-07 61.0 8.1 100 218-320 177-281 (517)
344 COG1092 Predicted SAM-dependen 96.1 0.028 6E-07 61.9 9.7 100 219-322 218-337 (393)
345 PRK04148 hypothetical protein; 96.1 0.027 5.8E-07 53.0 8.3 96 476-605 15-111 (134)
346 KOG0820 Ribosomal RNA adenine 96.1 0.024 5.1E-07 59.0 8.4 83 203-292 45-133 (315)
347 PLN02232 ubiquinone biosynthes 96.0 0.008 1.7E-07 57.8 4.5 70 508-581 3-82 (160)
348 PF05185 PRMT5: PRMT5 arginine 96.0 0.017 3.6E-07 64.9 7.4 123 446-578 151-295 (448)
349 PRK03612 spermidine synthase; 96.0 0.017 3.8E-07 66.0 7.8 123 476-600 296-440 (521)
350 PRK14901 16S rRNA methyltransf 95.9 0.019 4.1E-07 64.1 7.7 114 478-594 253-402 (434)
351 PLN02781 Probable caffeoyl-CoA 95.9 0.029 6.2E-07 57.6 8.4 128 477-620 68-233 (234)
352 KOG2915 tRNA(1-methyladenosine 95.8 0.15 3.3E-06 53.2 13.1 104 205-322 94-211 (314)
353 KOG1663 O-methyltransferase [S 95.7 0.082 1.8E-06 53.9 10.6 108 206-321 63-183 (237)
354 PRK15128 23S rRNA m(5)C1962 me 95.7 0.019 4.1E-07 63.5 6.5 123 478-602 221-367 (396)
355 COG1189 Predicted rRNA methyla 95.7 0.19 4.2E-06 51.5 13.1 132 218-360 79-221 (245)
356 PHA03411 putative methyltransf 95.5 0.018 3.8E-07 60.5 5.2 99 478-579 65-182 (279)
357 PRK13168 rumA 23S rRNA m(5)U19 95.4 0.086 1.9E-06 59.1 10.7 131 478-619 298-442 (443)
358 KOG1709 Guanidinoacetate methy 95.4 0.064 1.4E-06 54.1 8.4 109 202-320 88-205 (271)
359 COG2520 Predicted methyltransf 95.4 0.16 3.4E-06 55.1 12.0 117 195-322 169-290 (341)
360 KOG2361 Predicted methyltransf 95.4 0.024 5.2E-07 58.1 5.4 97 480-580 74-183 (264)
361 COG0144 Sun tRNA and rRNA cyto 95.4 0.15 3.2E-06 55.6 11.9 112 208-322 148-289 (355)
362 PF02527 GidB: rRNA small subu 95.4 0.1 2.2E-06 51.7 9.7 140 452-601 25-172 (184)
363 COG0742 N6-adenine-specific me 95.3 0.22 4.9E-06 49.4 11.9 131 185-322 11-155 (187)
364 KOG3420 Predicted RNA methylas 95.3 0.029 6.3E-07 53.3 5.3 74 218-292 48-124 (185)
365 PF03291 Pox_MCEL: mRNA cappin 95.2 0.021 4.5E-07 61.7 4.8 130 453-590 39-198 (331)
366 COG0357 GidB Predicted S-adeno 95.2 0.3 6.6E-06 49.6 12.8 94 219-320 68-167 (215)
367 COG4798 Predicted methyltransf 95.1 0.092 2E-06 52.3 8.3 107 211-322 43-167 (238)
368 COG3897 Predicted methyltransf 95.1 0.068 1.5E-06 53.3 7.4 97 218-321 79-178 (218)
369 PF03492 Methyltransf_7: SAM d 95.1 0.1 2.3E-06 56.4 9.6 106 216-322 14-184 (334)
370 TIGR00479 rumA 23S rRNA (uraci 95.1 0.056 1.2E-06 60.2 7.7 113 478-600 293-416 (431)
371 PF00398 RrnaAD: Ribosomal RNA 95.1 0.17 3.6E-06 52.7 10.7 100 202-313 16-123 (262)
372 PF10672 Methyltrans_SAM: S-ad 95.0 0.1 2.2E-06 55.3 8.8 100 219-322 124-239 (286)
373 PHA03412 putative methyltransf 95.0 0.038 8.2E-07 56.9 5.4 95 479-578 51-160 (241)
374 PF01269 Fibrillarin: Fibrilla 94.9 0.16 3.4E-06 51.8 9.6 100 213-321 70-178 (229)
375 PF05891 Methyltransf_PK: AdoM 94.9 0.062 1.3E-06 54.5 6.6 127 476-605 54-202 (218)
376 PLN02366 spermidine synthase 94.9 0.046 1E-06 58.4 6.0 102 476-579 90-205 (308)
377 PF01739 CheR: CheR methyltran 94.9 0.03 6.5E-07 56.0 4.3 128 451-582 5-177 (196)
378 PRK00050 16S rRNA m(4)C1402 me 94.8 0.06 1.3E-06 57.2 6.7 53 205-262 8-63 (296)
379 PF05958 tRNA_U5-meth_tr: tRNA 94.8 0.068 1.5E-06 58.2 7.1 67 204-274 185-254 (352)
380 PLN02668 indole-3-acetate carb 94.8 0.093 2E-06 57.7 8.1 50 274-324 154-240 (386)
381 TIGR00308 TRM1 tRNA(guanine-26 94.7 0.088 1.9E-06 57.8 7.8 95 220-321 46-147 (374)
382 PF04672 Methyltransf_19: S-ad 94.7 0.17 3.6E-06 53.0 9.3 103 218-322 68-191 (267)
383 PRK03522 rumB 23S rRNA methylu 94.5 0.12 2.6E-06 55.2 8.3 129 478-619 174-314 (315)
384 KOG1271 Methyltransferases [Ge 94.5 0.064 1.4E-06 52.9 5.4 113 480-594 70-195 (227)
385 COG2521 Predicted archaeal met 94.2 0.11 2.4E-06 53.1 6.5 124 476-603 133-276 (287)
386 PF01135 PCMT: Protein-L-isoas 94.1 0.035 7.7E-07 56.1 2.8 89 477-579 72-171 (209)
387 smart00650 rADc Ribosomal RNA 94.1 0.061 1.3E-06 51.9 4.3 95 476-580 12-113 (169)
388 KOG1269 SAM-dependent methyltr 93.7 0.13 2.8E-06 56.2 6.5 120 451-579 88-214 (364)
389 PF10294 Methyltransf_16: Puta 93.2 0.1 2.2E-06 50.9 4.3 99 476-580 44-156 (173)
390 PF13679 Methyltransf_32: Meth 93.0 0.26 5.6E-06 46.4 6.5 21 218-238 25-45 (141)
391 COG0116 Predicted N6-adenine-s 93.0 0.76 1.7E-05 50.4 10.9 113 207-322 182-345 (381)
392 PLN02476 O-methyltransferase 93.0 0.37 8E-06 50.9 8.3 131 477-620 118-278 (278)
393 PF01596 Methyltransf_3: O-met 93.0 0.2 4.3E-06 50.5 6.0 131 477-620 45-205 (205)
394 KOG2187 tRNA uracil-5-methyltr 92.8 0.17 3.8E-06 56.9 5.8 71 201-274 368-441 (534)
395 PF01189 Nol1_Nop2_Fmu: NOL1/N 92.6 0.21 4.5E-06 52.8 5.9 112 208-322 77-220 (283)
396 COG4122 Predicted O-methyltran 92.6 0.29 6.3E-06 49.8 6.7 135 477-620 59-218 (219)
397 PF09445 Methyltransf_15: RNA 92.6 0.3 6.4E-06 47.6 6.4 65 221-290 2-77 (163)
398 PRK10909 rsmD 16S rRNA m(2)G96 92.6 0.13 2.8E-06 51.6 4.1 98 479-582 55-161 (199)
399 COG2518 Pcm Protein-L-isoaspar 92.5 0.083 1.8E-06 53.3 2.5 91 476-579 71-168 (209)
400 PF01861 DUF43: Protein of unk 92.0 2.3 4.9E-05 44.0 12.3 139 202-358 28-173 (243)
401 PRK11933 yebU rRNA (cytosine-C 91.8 0.28 6.1E-06 55.5 6.0 98 477-579 113-241 (470)
402 KOG3115 Methyltransferase-like 91.6 0.26 5.6E-06 49.5 4.7 99 221-321 63-183 (249)
403 PLN02672 methionine S-methyltr 91.4 0.33 7.1E-06 59.9 6.4 119 479-599 120-298 (1082)
404 COG1064 AdhP Zn-dependent alco 91.4 0.9 2E-05 49.2 9.0 93 219-323 167-261 (339)
405 PF05724 TPMT: Thiopurine S-me 91.3 0.5 1.1E-05 48.1 6.7 123 476-603 36-189 (218)
406 COG5459 Predicted rRNA methyla 91.2 1.3 2.7E-05 48.0 9.6 104 218-322 113-226 (484)
407 PRK13256 thiopurine S-methyltr 91.1 0.54 1.2E-05 48.2 6.8 97 478-578 44-161 (226)
408 PLN02823 spermine synthase 91.0 1.4 3E-05 47.8 10.1 99 476-579 102-219 (336)
409 PF06859 Bin3: Bicoid-interact 90.9 0.12 2.5E-06 47.0 1.5 47 282-330 1-51 (110)
410 PF12147 Methyltransf_20: Puta 90.6 0.69 1.5E-05 49.0 7.1 131 472-602 130-277 (311)
411 PRK00536 speE spermidine synth 90.6 1.4 3.1E-05 46.1 9.5 94 472-579 68-170 (262)
412 COG4076 Predicted RNA methylas 90.5 0.26 5.6E-06 48.9 3.5 92 221-319 35-133 (252)
413 PF13578 Methyltransf_24: Meth 90.1 0.13 2.9E-06 45.3 1.2 93 223-320 1-104 (106)
414 KOG1975 mRNA cap methyltransfe 90.0 0.64 1.4E-05 49.8 6.2 61 539-600 195-258 (389)
415 COG2519 GCD14 tRNA(1-methylade 89.6 2 4.4E-05 44.6 9.4 105 478-597 95-213 (256)
416 KOG1499 Protein arginine N-met 89.5 0.39 8.5E-06 51.8 4.3 94 477-578 60-165 (346)
417 KOG2904 Predicted methyltransf 89.1 2.5 5.4E-05 44.5 9.6 158 453-619 128-327 (328)
418 TIGR02085 meth_trns_rumB 23S r 89.0 2.8 6E-05 46.0 10.6 125 479-617 235-372 (374)
419 PF06080 DUF938: Protein of un 88.6 0.65 1.4E-05 46.8 4.9 134 480-619 28-204 (204)
420 PF05971 Methyltransf_10: Prot 88.5 1.9 4.2E-05 45.9 8.6 93 200-292 81-187 (299)
421 TIGR01444 fkbM_fam methyltrans 88.5 0.87 1.9E-05 42.1 5.4 28 221-248 1-30 (143)
422 PRK00274 ksgA 16S ribosomal RN 88.3 0.33 7.2E-06 50.8 2.7 41 478-521 43-83 (272)
423 COG1889 NOP1 Fibrillarin-like 88.1 3.4 7.5E-05 41.7 9.5 100 213-321 73-180 (231)
424 PF03059 NAS: Nicotianamine sy 88.0 4 8.7E-05 43.1 10.5 97 219-321 121-230 (276)
425 COG0357 GidB Predicted S-adeno 87.8 5.9 0.00013 40.3 11.2 169 424-617 31-209 (215)
426 COG4262 Predicted spermidine s 87.3 3.3 7.1E-05 45.2 9.4 130 189-322 259-408 (508)
427 PF08704 GCD14: tRNA methyltra 86.5 0.92 2E-05 47.1 4.7 112 472-599 38-166 (247)
428 KOG1331 Predicted methyltransf 86.4 0.59 1.3E-05 49.2 3.2 95 478-579 46-142 (293)
429 PF01269 Fibrillarin: Fibrilla 86.3 2.3 5E-05 43.5 7.3 133 477-617 73-224 (229)
430 PRK11760 putative 23S rRNA C24 86.2 6.6 0.00014 42.8 11.1 90 477-579 211-304 (357)
431 PF07757 AdoMet_MTase: Predict 86.2 0.96 2.1E-05 41.1 4.0 29 219-247 59-87 (112)
432 PF10354 DUF2431: Domain of un 86.1 5.6 0.00012 38.8 9.7 120 225-360 3-149 (166)
433 PRK14896 ksgA 16S ribosomal RN 85.7 0.82 1.8E-05 47.5 3.9 42 477-521 29-70 (258)
434 cd08254 hydroxyacyl_CoA_DH 6-h 85.7 4.4 9.6E-05 42.4 9.5 91 220-322 167-264 (338)
435 PF03269 DUF268: Caenorhabditi 85.2 0.63 1.4E-05 45.2 2.5 43 280-322 61-112 (177)
436 KOG1122 tRNA and rRNA cytosine 84.8 4.5 9.8E-05 44.9 9.1 104 214-322 237-372 (460)
437 cd08283 FDH_like_1 Glutathione 84.7 5.8 0.00013 43.3 10.2 99 219-322 185-307 (386)
438 PF04816 DUF633: Family of unk 84.7 6.2 0.00013 39.8 9.5 115 222-361 1-122 (205)
439 PF07942 N2227: N2227-like pro 84.5 9.1 0.0002 40.4 11.0 122 477-601 56-239 (270)
440 PF06962 rRNA_methylase: Putat 84.4 4.6 0.0001 38.4 7.9 73 250-322 6-93 (140)
441 COG0286 HsdM Type I restrictio 84.3 9.3 0.0002 43.6 11.9 117 201-322 171-327 (489)
442 KOG2793 Putative N2,N2-dimethy 84.3 7.8 0.00017 40.4 10.2 100 219-322 87-200 (248)
443 PRK10742 putative methyltransf 83.9 4.4 9.6E-05 42.2 8.2 87 207-293 77-175 (250)
444 KOG3115 Methyltransferase-like 83.2 1.9 4.1E-05 43.5 5.0 23 560-582 163-185 (249)
445 COG1189 Predicted rRNA methyla 83.0 8.8 0.00019 39.7 9.8 117 477-602 79-222 (245)
446 KOG2940 Predicted methyltransf 82.8 1.2 2.5E-05 45.7 3.4 97 477-579 72-173 (325)
447 TIGR00755 ksgA dimethyladenosi 82.4 0.96 2.1E-05 46.7 2.8 43 476-521 28-70 (253)
448 KOG2198 tRNA cytosine-5-methyl 82.1 17 0.00037 39.9 12.0 104 214-322 153-297 (375)
449 PRK09880 L-idonate 5-dehydroge 80.0 7.6 0.00016 41.5 8.7 93 219-322 170-267 (343)
450 KOG4589 Cell division protein 79.8 7.2 0.00016 39.1 7.5 20 220-239 71-90 (232)
451 COG3129 Predicted SAM-dependen 79.4 4.8 0.0001 41.5 6.4 94 199-292 55-163 (292)
452 cd08230 glucose_DH Glucose deh 79.0 7.6 0.00017 41.6 8.4 94 219-322 173-270 (355)
453 COG1092 Predicted SAM-dependen 78.5 3.5 7.7E-05 45.7 5.6 146 451-602 195-364 (393)
454 PRK10611 chemotaxis methyltran 77.9 1.8 3.8E-05 46.0 3.0 44 538-582 221-264 (287)
455 PRK13699 putative methylase; P 77.8 4.8 0.0001 41.2 6.1 50 559-620 51-100 (227)
456 TIGR02143 trmA_only tRNA (urac 77.6 20 0.00044 39.0 11.2 126 480-618 200-351 (353)
457 PRK04338 N(2),N(2)-dimethylgua 76.8 2.5 5.5E-05 46.6 3.9 91 479-579 59-157 (382)
458 COG4301 Uncharacterized conser 76.8 28 0.0006 36.4 11.0 101 220-321 80-193 (321)
459 PF01564 Spermine_synth: Sperm 76.5 39 0.00085 34.9 12.4 161 452-621 56-239 (246)
460 PF07091 FmrO: Ribosomal RNA m 76.4 10 0.00022 39.5 7.9 141 201-357 92-238 (251)
461 PRK11524 putative methyltransf 76.3 2.2 4.7E-05 45.0 3.1 52 267-319 10-78 (284)
462 PRK09424 pntA NAD(P) transhydr 76.3 15 0.00032 42.3 9.9 97 219-322 165-286 (509)
463 PF00107 ADH_zinc_N: Zinc-bind 75.6 4.7 0.0001 36.3 4.8 84 228-322 1-90 (130)
464 COG0421 SpeE Spermidine syntha 75.3 10 0.00022 40.2 7.8 121 472-597 72-212 (282)
465 PTZ00338 dimethyladenosine tra 74.8 2.8 6.1E-05 44.6 3.5 41 478-521 37-77 (294)
466 KOG2899 Predicted methyltransf 74.6 2.6 5.5E-05 43.7 2.9 41 539-579 165-208 (288)
467 COG1889 NOP1 Fibrillarin-like 74.1 35 0.00077 34.7 10.7 135 477-620 76-229 (231)
468 KOG1099 SAM-dependent methyltr 73.8 3.4 7.3E-05 42.5 3.6 91 219-320 42-162 (294)
469 TIGR02987 met_A_Alw26 type II 73.2 24 0.00052 40.5 10.8 143 477-620 31-247 (524)
470 TIGR02822 adh_fam_2 zinc-bindi 72.9 25 0.00055 37.4 10.3 88 219-322 166-255 (329)
471 KOG2730 Methylase [General fun 72.0 9.3 0.0002 39.2 6.1 90 221-316 97-197 (263)
472 PF02475 Met_10: Met-10+ like- 72.0 2.6 5.7E-05 42.4 2.3 89 478-576 102-198 (200)
473 KOG1562 Spermidine synthase [A 71.3 4.7 0.0001 42.9 4.1 98 218-321 121-236 (337)
474 PF03514 GRAS: GRAS domain fam 70.9 22 0.00049 39.1 9.5 111 208-320 102-243 (374)
475 PF13578 Methyltransf_24: Meth 70.9 1.9 4.1E-05 37.9 0.9 95 482-580 1-105 (106)
476 PF04445 SAM_MT: Putative SAM- 70.8 9.1 0.0002 39.5 6.0 88 207-294 64-163 (234)
477 KOG1596 Fibrillarin and relate 70.5 16 0.00034 38.1 7.4 100 214-322 154-262 (317)
478 KOG0822 Protein kinase inhibit 70.2 13 0.00028 42.5 7.4 101 219-320 368-477 (649)
479 KOG2920 Predicted methyltransf 69.8 3.5 7.5E-05 43.5 2.7 38 282-321 196-234 (282)
480 PF13679 Methyltransf_32: Meth 69.2 4.1 8.8E-05 38.2 2.9 58 462-521 6-72 (141)
481 cd08245 CAD Cinnamyl alcohol d 69.1 41 0.00089 35.2 10.8 93 219-322 163-257 (330)
482 TIGR00027 mthyl_TIGR00027 meth 67.9 69 0.0015 33.4 11.9 103 219-321 82-197 (260)
483 cd05188 MDR Medium chain reduc 67.8 40 0.00087 33.5 10.0 90 219-322 135-233 (271)
484 KOG3191 Predicted N6-DNA-methy 67.2 35 0.00075 34.2 8.8 126 477-603 43-192 (209)
485 cd08234 threonine_DH_like L-th 67.2 31 0.00068 36.1 9.4 92 219-322 160-258 (334)
486 COG1352 CheR Methylase of chem 66.9 19 0.00042 37.9 7.5 128 451-583 71-244 (268)
487 COG4627 Uncharacterized protei 66.8 2.1 4.6E-05 41.5 0.4 44 535-579 41-85 (185)
488 PRK00050 16S rRNA m(4)C1402 me 66.7 2.7 5.9E-05 44.8 1.2 44 478-521 20-63 (296)
489 PF10672 Methyltrans_SAM: S-ad 66.2 9 0.0002 40.7 5.0 123 478-605 124-269 (286)
490 KOG3201 Uncharacterized conser 66.2 6.7 0.00015 38.4 3.6 117 477-601 29-163 (201)
491 PF06859 Bin3: Bicoid-interact 66.1 1.7 3.7E-05 39.6 -0.4 59 541-599 2-71 (110)
492 COG2263 Predicted RNA methylas 65.7 12 0.00026 37.4 5.4 83 478-563 46-131 (198)
493 PF01555 N6_N4_Mtase: DNA meth 65.0 12 0.00025 36.8 5.3 53 202-260 178-230 (231)
494 PLN02589 caffeoyl-CoA O-methyl 64.9 6.1 0.00013 41.0 3.4 131 477-620 79-246 (247)
495 TIGR02825 B4_12hDH leukotriene 64.9 48 0.001 34.8 10.3 92 219-322 139-238 (325)
496 cd08232 idonate-5-DH L-idonate 64.9 32 0.0007 36.2 9.0 91 219-321 166-262 (339)
497 TIGR00006 S-adenosyl-methyltra 64.6 21 0.00046 38.3 7.5 54 204-262 8-63 (305)
498 cd08281 liver_ADH_like1 Zinc-d 64.4 29 0.00062 37.5 8.7 91 220-322 193-291 (371)
499 TIGR03451 mycoS_dep_FDH mycoth 63.8 34 0.00073 36.7 9.0 92 219-322 177-277 (358)
500 COG2384 Predicted SAM-dependen 63.1 1.3E+02 0.0028 31.0 12.3 130 204-361 6-141 (226)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=2.4e-152 Score=1226.80 Aligned_cols=500 Identities=64% Similarity=1.180 Sum_probs=485.8
Q ss_pred CcccCCCchhhhcc--chhhhhhhcCCCCCCCCccccccCCCCCCCCCCCCCcccccccccCCCCchhhhhhhhcceEee
Q 006633 106 ENVPCEDTHRSLKF--DRDRLIYRERHCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRF 183 (637)
Q Consensus 106 ~y~pc~d~~~~~~~--~~~~~~~~~r~C~p~~~~~~clvp~P~~Y~~P~pwP~Srd~~wy~n~p~~~L~~~k~~q~W~~~ 183 (637)
||+||+|+.+++++ +++++++||||||+.+++++||||+|+||+.|+|||+|||++||+|+||++|+.+|+.|||++.
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~ 80 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRV 80 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccceee
Confidence 79999999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeecCCCCCCCcccHHHHHHHHHHHhcc--cCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHH
Q 006633 184 QGDRFSFPGGGTMFPRGADAYIDDIGKLINL--KDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE 261 (637)
Q Consensus 184 ~g~~~~Fpg~g~~f~~g~~~~i~~L~~lL~~--~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~e 261 (637)
+|+.+.|||+|++|+.|++.|+++|.++++. .++..|++||||||+|+|+++|++++|+++++++.|.+++++|+|++
T Consensus 81 ~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale 160 (506)
T PF03141_consen 81 EGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE 160 (506)
T ss_pred cCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh
Confidence 9999999999999999999999999999997 77889999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhH
Q 006633 262 RGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLK 341 (637)
Q Consensus 262 rg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~ 341 (637)
||+++.+.++..++||||+++||+|||++|+++|.+ +.+.+|.|++|+|||||+|++++||.+ +++.+++.
T Consensus 161 RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~-~~g~~l~evdRvLRpGGyfv~S~ppv~--------~r~~~~~~ 231 (506)
T PF03141_consen 161 RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHP-NDGFLLFEVDRVLRPGGYFVLSGPPVY--------QRTDEDLE 231 (506)
T ss_pred cCcchhhhhhccccccCCccchhhhhcccccccchh-cccceeehhhhhhccCceEEecCCccc--------ccchHHHH
Confidence 999999999889999999999999999999999998 778999999999999999999999887 36778889
Q ss_pred HhHhhHHHHHHHhceeeecccCcEEEEeccCCCccccccccccCCCCCcc-cCCcCCccccccccccccCcccchhhhhc
Q 006633 342 SEQNGIETIARSLCWKKLIQKKDLAIWQKPTNHVHCIANRRVFKKPRFCK-AQDPDMAWYTKMETCLTPLPEVSNIKEIA 420 (637)
Q Consensus 342 ~~~~~ie~la~~l~w~~v~~~~~~aIWqKP~~~~~c~~~~~~~~~~~~c~-~~~~~~~wy~~l~~ci~~~p~~~~~~~~~ 420 (637)
++|+.+++++++|||++++++++++|||||.+| +||.+|+..+.|++|+ ++|||++||++|++|||++|++.+ +.+
T Consensus 232 ~~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~-~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~--~~~ 308 (506)
T PF03141_consen 232 EEWNAMEDLAKSLCWKKVAEKGDTAIWQKPTNN-SCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSS--EIA 308 (506)
T ss_pred HHHHHHHHHHHHHHHHHheeeCCEEEEeccCCc-hhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccc--ccc
Confidence 999999999999999999999999999999998 9999999889999999 899999999999999999998754 778
Q ss_pred CCccccCccccccCCcccccCcccCcchhcchhhHHHHHHHHHHHHHhhh-ccCCCCCceeEeeecccchhhhhhhcCCC
Q 006633 421 GGQLTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDY-QLAQPGRYRNLLDMNAYLGGFAAALVDDP 499 (637)
Q Consensus 421 ~~~~~~wp~rl~~~p~~i~~~~~~g~~~~~f~~d~~~w~~~v~~y~~~~~-~l~~~~~~r~vlD~~~g~ggfaa~l~~~~ 499 (637)
++++++||+||+++|+||+++++.|+++|.|++|+++|+++|++|+++++ .+++ +++|||||||||||||||||.++|
T Consensus 309 ~~~~~~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~-~~iRNVMDMnAg~GGFAAAL~~~~ 387 (506)
T PF03141_consen 309 GGWLPKWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKW-GRIRNVMDMNAGYGGFAAALIDDP 387 (506)
T ss_pred ccCCCCChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccccc-cceeeeeeecccccHHHHHhccCC
Confidence 89999999999999999999999999999999999999999999999887 6888 999999999999999999999999
Q ss_pred eEEEEeccCCCCcchhHHHHhhcccchhhccccccCCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 500 LWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 500 v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~yp~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
||||||||+.++ |||++||||||||+||||||+|||||||||||||++|||.|++||++++||+||||||||||++|||
T Consensus 388 VWVMNVVP~~~~-ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 388 VWVMNVVPVSGP-NTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIR 466 (506)
T ss_pred ceEEEecccCCC-CcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEe
Confidence 999999999886 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCHHHHHHHHHHHhcCCceeEEeccCCCCCCcceEEEEEe
Q 006633 580 DDVDILVKIKSITDGMEWEGRIADHENGPRQREKILFANK 619 (637)
Q Consensus 580 d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 619 (637)
|+.+++++|++|+++|+|+++++|+|+||+++||||||||
T Consensus 467 D~~~vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 467 DTVDVLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred ccHHHHHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 9999999999999999999999999999999999999998
No 2
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.97 E-value=2.8e-32 Score=295.61 Aligned_cols=197 Identities=19% Similarity=0.343 Sum_probs=151.8
Q ss_pred ccccccccCcccchhhhhcCCccccCccccccC-----C-cccccCcccCc------chh--cchhhHHHHHHHHHHHHH
Q 006633 402 KMETCLTPLPEVSNIKEIAGGQLTKWPERLNAI-----P-PRVNRGAVDGV------TAE--MFREDTALWKKRVTYYKS 467 (637)
Q Consensus 402 ~l~~ci~~~p~~~~~~~~~~~~~~~wp~rl~~~-----p-~~i~~~~~~g~------~~~--~f~~d~~~w~~~v~~y~~ 467 (637)
+...|+.|.|.. ...+.+||+....+ | +.|+. ..+. ..+ .|.-....+++.+.+|..
T Consensus 33 ~~~~CLVp~P~g-------Yk~P~~WP~SRd~iW~~Nvph~~L~~--~K~~qnWv~~~gd~~~FPgggt~F~~Ga~~Yid 103 (506)
T PF03141_consen 33 ERLRCLVPPPKG-------YKTPIPWPKSRDYIWYANVPHTKLAE--EKADQNWVRVEGDKFRFPGGGTMFPHGADHYID 103 (506)
T ss_pred CCCccccCCCcc-------CCCCCCCCcccceeeecccCchHHhh--hcccccceeecCCEEEeCCCCccccCCHHHHHH
Confidence 456788888742 35678888877544 1 22221 0110 011 344445555555666654
Q ss_pred hh----hccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhccccccCCCC-Cccc
Q 006633 468 VD----YQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP-RTYD 542 (637)
Q Consensus 468 ~~----~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~yp-~t~D 542 (637)
.+ +.+.++|.+|++||+|||+|+|||+|.+++|.+|+++|.+.+++++|+|+|||++.++........+|| ++||
T Consensus 104 ~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fD 183 (506)
T PF03141_consen 104 QIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFD 183 (506)
T ss_pred HHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchh
Confidence 33 223455899999999999999999999999999999999999999999999999888877766777787 9999
Q ss_pred eeeeccccccCCCCcCHH------HHHHHHhhcccCCcEEEEEe----------CHHHHHHHHHHHhcCCceeEEeccCC
Q 006633 543 LIHADSIFSLYKDRCEME------DVLLEMDRILRPEGSVIIRD----------DVDILVKIKSITDGMEWEGRIADHEN 606 (637)
Q Consensus 543 l~H~~~lfs~~~~~c~~~------~~l~e~dRiLrPgG~~i~~d----------~~~~~~~~~~~~~~~~W~~~~~~~e~ 606 (637)
|+|| +||.++ .+|+|+|||||||||||++. ..+++++|++++++|||+....
T Consensus 184 mvHc--------src~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~---- 251 (506)
T PF03141_consen 184 MVHC--------SRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAE---- 251 (506)
T ss_pred hhhc--------ccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHhee----
Confidence 9999 777765 79999999999999999973 3568999999999999999884
Q ss_pred CCCCcceEEEEEecCCC
Q 006633 607 GPRQREKILFANKKYWT 623 (637)
Q Consensus 607 ~~~~~~~~l~~~K~~w~ 623 (637)
+..+.|+||+.=.
T Consensus 252 ----~~~~aIwqKp~~~ 264 (506)
T PF03141_consen 252 ----KGDTAIWQKPTNN 264 (506)
T ss_pred ----eCCEEEEeccCCc
Confidence 3459999998754
No 3
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.84 E-value=4.2e-20 Score=206.11 Aligned_cols=327 Identities=12% Similarity=0.129 Sum_probs=178.2
Q ss_pred HHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc---CCCeEEEEeccc--cCCCCC
Q 006633 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER---GVPALIGVMASI--RLPYPS 280 (637)
Q Consensus 206 ~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er---g~~~~~~~~d~~--~Lpfpd 280 (637)
..+.+.++..+ ..+|||||||+|.++..|++....++.+ |+++.+++.+.+. ..++.+...+.. .+++++
T Consensus 27 ~~il~~l~~~~--~~~vLDlGcG~G~~~~~la~~~~~v~gi---D~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 27 PEILSLLPPYE--GKSVLELGAGIGRFTGELAKKAGQVIAL---DFIESVIKKNESINGHYKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred hHHHhhcCccC--CCEEEEeCCCcCHHHHHHHhhCCEEEEE---eCCHHHHHHHHHHhccCCceEEEEecccccccCCCC
Confidence 34555554433 3489999999999999999874434444 4455555554432 235667777764 567888
Q ss_pred CCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeec
Q 006633 281 RAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 360 (637)
Q Consensus 281 ~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~ 360 (637)
++||+|+|+.+++|+.+++...++.++.|+|||||++++............. ........ ....+..+...-++....
T Consensus 102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~-~~~~~~~~-~~~~~~~~f~~~~~~~~~ 179 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKR-KNNPTHYR-EPRFYTKVFKECHTRDED 179 (475)
T ss_pred CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccc-cCCCCeec-ChHHHHHHHHHheeccCC
Confidence 9999999999998887534678999999999999999998642211100000 00011111 122334445554444333
Q ss_pred ccC-c-EEEEeccCCCccccccccccCCCCCcccCCcCCcc--ccccccccccCcccchhhhhcCCccccCccccccCCc
Q 006633 361 QKK-D-LAIWQKPTNHVHCIANRRVFKKPRFCKAQDPDMAW--YTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPP 436 (637)
Q Consensus 361 ~~~-~-~aIWqKP~~~~~c~~~~~~~~~~~~c~~~~~~~~w--y~~l~~ci~~~p~~~~~~~~~~~~~~~wp~rl~~~p~ 436 (637)
... . ...+-++++. |... ...| |..+..=++.. + -..+..+=+|+.-.++
T Consensus 180 ~~~~~~~~~~~~~~~~---~~~~--------------~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~~y~~~ 233 (475)
T PLN02336 180 GNSFELSLVGCKCIGA---YVKN--------------KKNQNQICWLWQKVSST-------N--DKGFQRFLDNVQYKSS 233 (475)
T ss_pred CCEEEEEEEEeechhh---hhhc--------------cCCcceEEEEEEeecCC-------c--chhHHHHhhhhccccc
Confidence 211 1 1233344321 1111 1111 11111101000 0 0111111122110111
Q ss_pred ccccCcccCcchhcchhhHHHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhH
Q 006633 437 RVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLG 516 (637)
Q Consensus 437 ~i~~~~~~g~~~~~f~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~ 516 (637)
.|.. .+.|-...-.+...|..-+.++..+.. .....|||+|||.|+++..|++.. -.+|+.+|.++.++.
T Consensus 234 ~i~~-------~~~f~g~~~~v~~~v~~te~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~ 303 (475)
T PLN02336 234 GILR-------YERVFGEGFVSTGGLETTKEFVDKLDL-KPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMIS 303 (475)
T ss_pred cHHH-------HHHHhCCCCCCCchHHHHHHHHHhcCC-CCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHH
Confidence 1100 011111011111122222233332322 346789999999999999888752 236777777778888
Q ss_pred HHHhhc--c---cchhh-ccccccCCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 517 VIYERG--L---IGTYQ-NWCEAMSTYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 517 ~~~eRg--l---~~~~~-~wce~~~~yp-~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
.+.++- + +...+ |+.+ .++| .+||+|.+.+++-... +.+.+|-|+.|+|||||.++|.|
T Consensus 304 ~A~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~I~s~~~l~h~~---d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 304 FALERAIGRKCSVEFEVADCTK--KTYPDNSFDVIYSRDTILHIQ---DKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred HHHHHhhcCCCceEEEEcCccc--CCCCCCCEEEEEECCcccccC---CHHHHHHHHHHHcCCCeEEEEEE
Confidence 886653 2 12211 3322 2355 7899999987776544 45899999999999999999985
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.58 E-value=1e-14 Score=148.36 Aligned_cols=111 Identities=24% Similarity=0.294 Sum_probs=89.0
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHHcCCC-----eEEEEeccccC
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVP-----ALIGVMASIRL 276 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~erg~~-----~~~~~~d~~~L 276 (637)
.-+.+.+.+...+ +.+|||||||||.++..+++.. ..++.+ |++..|++.|+++..+ +.|.++|++.|
T Consensus 39 Wr~~~i~~~~~~~--g~~vLDva~GTGd~a~~~~k~~g~g~v~~~---D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L 113 (238)
T COG2226 39 WRRALISLLGIKP--GDKVLDVACGTGDMALLLAKSVGTGEVVGL---DISESMLEVAREKLKKKGVQNVEFVVGDAENL 113 (238)
T ss_pred HHHHHHHhhCCCC--CCEEEEecCCccHHHHHHHHhcCCceEEEE---ECCHHHHHHHHHHhhccCccceEEEEechhhC
Confidence 3444555554444 4499999999999999999872 333333 5566777777766433 78999999999
Q ss_pred CCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 277 PYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 277 pfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
||+|++||+|.+++.|.++. |.+.+|+|+.|||||||.+++..
T Consensus 114 Pf~D~sFD~vt~~fglrnv~--d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 114 PFPDNSFDAVTISFGLRNVT--DIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred CCCCCccCEEEeeehhhcCC--CHHHHHHHHHHhhcCCeEEEEEE
Confidence 99999999999999997777 89999999999999999998875
No 5
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.57 E-value=1.4e-14 Score=124.09 Aligned_cols=92 Identities=27% Similarity=0.431 Sum_probs=78.3
Q ss_pred EEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcCC--CeEEEEeccccCCCCCCCeeEEEeccccccCCcCC
Q 006633 223 IDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYA 299 (637)
Q Consensus 223 LDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d 299 (637)
||+|||+|.++..|+++ +..++.+ |+++.+++.++++.. ...+...+...+|+++++||+|++..+++|+. +
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~---D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~--~ 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGI---DISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLE--D 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEE---ES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSS--H
T ss_pred CEecCcCCHHHHHHHhccCCEEEEE---eCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeecc--C
Confidence 89999999999999999 7777777 778888888887753 35588899999999999999999999998883 8
Q ss_pred HHHHHHHHHhcccCCeEEEE
Q 006633 300 DGLYLIEVDRVLRPGGYWIL 319 (637)
Q Consensus 300 ~~~~L~ei~RvLKPGG~Lvl 319 (637)
...+++|+.|+|||||++++
T Consensus 76 ~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHcCcCeEEeC
Confidence 99999999999999999986
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.54 E-value=1.7e-14 Score=147.03 Aligned_cols=108 Identities=27% Similarity=0.385 Sum_probs=74.6
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHc-----CCCeEEEEeccccCCC
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER-----GVPALIGVMASIRLPY 278 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~er-----g~~~~~~~~d~~~Lpf 278 (637)
.+.+.+...++. +|||+|||||.++..++++ +..++.+ |+++.|++.|+++ ..++.+.++|++.+||
T Consensus 38 ~~~~~~~~~~g~--~vLDv~~GtG~~~~~l~~~~~~~~~v~~v---D~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~ 112 (233)
T PF01209_consen 38 KLIKLLGLRPGD--RVLDVACGTGDVTRELARRVGPNGKVVGV---DISPGMLEVARKKLKREGLQNIEFVQGDAEDLPF 112 (233)
T ss_dssp HHHHHHT--S----EEEEET-TTSHHHHHHGGGSS---EEEEE---ES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S
T ss_pred HHHhccCCCCCC--EEEEeCCChHHHHHHHHHHCCCccEEEEe---cCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcC
Confidence 455555444444 9999999999999999876 2233333 5566666666543 2378999999999999
Q ss_pred CCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 279 PSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 279 pd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
++++||+|+|++.+.+++ |..++++|+.|+|||||.+++..
T Consensus 113 ~d~sfD~v~~~fglrn~~--d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 113 PDNSFDAVTCSFGLRNFP--DRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp -TT-EEEEEEES-GGG-S--SHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCceeEEEHHhhHHhhC--CHHHHHHHHHHHcCCCeEEEEee
Confidence 999999999999997777 89999999999999999999875
No 7
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.47 E-value=1.5e-13 Score=138.50 Aligned_cols=151 Identities=23% Similarity=0.271 Sum_probs=106.5
Q ss_pred cCCCCchhh-hhhhhcceEeecCCeeecCCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCE
Q 006633 164 ANVPHKELT-VEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNIL 242 (637)
Q Consensus 164 ~n~p~~~L~-~~k~~q~W~~~~g~~~~Fpg~g~~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~ 242 (637)
.|+++..+. ..+..+.|++.+++.-.. . .+-.....|+...... ...-.+.+|||||||.|.++..|++.|..
T Consensus 10 ~~id~~e~~~F~~la~~wwd~~g~f~~L-H---~~N~~rl~~i~~~~~~--~~~l~g~~vLDvGCGgG~Lse~mAr~Ga~ 83 (243)
T COG2227 10 QNVDYKELDKFEALASRWWDPEGEFKPL-H---KINPLRLDYIREVARL--RFDLPGLRVLDVGCGGGILSEPLARLGAS 83 (243)
T ss_pred ccCCHHHHHHHHHHHhhhcCCCCceeee-e---eeccchhhhhhhhhhc--ccCCCCCeEEEecCCccHhhHHHHHCCCe
Confidence 356665553 455678899877753322 1 1111223333332221 00123558999999999999999999765
Q ss_pred EEEcCccccHHHHHHHHH----HcCCCeEEEEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEE
Q 006633 243 AVSFAPRDTHEAQVQFAL----ERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWI 318 (637)
Q Consensus 243 ~vdisp~Dls~a~i~~A~----erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lv 318 (637)
++++ |+++..++.|+ +.++.+.+....++.+....++||+|+|..+++|++ +++.++..+.+.+||||.++
T Consensus 84 Vtgi---D~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~--dp~~~~~~c~~lvkP~G~lf 158 (243)
T COG2227 84 VTGI---DASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP--DPESFLRACAKLVKPGGILF 158 (243)
T ss_pred eEEe---cCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC--CHHHHHHHHHHHcCCCcEEE
Confidence 5555 55556655554 556777777777778776678999999999999999 89999999999999999999
Q ss_pred EEeCCCC
Q 006633 319 LSGPPVN 325 (637)
Q Consensus 319 ls~pp~~ 325 (637)
++++..+
T Consensus 159 ~STinrt 165 (243)
T COG2227 159 LSTINRT 165 (243)
T ss_pred EeccccC
Confidence 9987543
No 8
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.47 E-value=1.5e-13 Score=142.59 Aligned_cols=114 Identities=18% Similarity=0.246 Sum_probs=89.7
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcC---CCeEEEEeccccCCCC
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLPYP 279 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg---~~~~~~~~d~~~Lpfp 279 (637)
..+.+...+.+.++. +|||||||+|..+..|++. +..++.+ |+++.+++.|+++. ..+.+...|...+|++
T Consensus 40 ~~~~~l~~l~l~~~~--~VLDiGcG~G~~a~~la~~~~~~v~gi---D~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~ 114 (263)
T PTZ00098 40 ATTKILSDIELNENS--KVLDIGSGLGGGCKYINEKYGAHVHGV---DICEKMVNIAKLRNSDKNKIEFEANDILKKDFP 114 (263)
T ss_pred HHHHHHHhCCCCCCC--EEEEEcCCCChhhHHHHhhcCCEEEEE---ECCHHHHHHHHHHcCcCCceEEEECCcccCCCC
Confidence 355666666665544 9999999999999988765 4444444 55667777776553 2477888888888999
Q ss_pred CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 280 SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 280 d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+++||+|++..+++|+..++...+++++.++|||||+|+++.+
T Consensus 115 ~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 115 ENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9999999999888888643788999999999999999999865
No 9
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.47 E-value=6.3e-13 Score=136.19 Aligned_cols=112 Identities=21% Similarity=0.310 Sum_probs=91.0
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCe
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAF 283 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sF 283 (637)
..+.+.+.++.. ...+|||+|||+|.++..|++.+..++.+ |+++.+++.++++.....+..+|...+|+++++|
T Consensus 30 ~a~~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~~~~v~~~---D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~f 104 (251)
T PRK10258 30 SADALLAMLPQR--KFTHVLDAGCGPGWMSRYWRERGSQVTAL---DLSPPMLAQARQKDAADHYLAGDIESLPLATATF 104 (251)
T ss_pred HHHHHHHhcCcc--CCCeEEEeeCCCCHHHHHHHHcCCeEEEE---ECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcE
Confidence 344555555533 24589999999999999998876555555 6677888888877655567788899999999999
Q ss_pred eEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 284 DMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 284 DlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|+|+++.++ ||.. +...++.++.|+|||||.++++.+
T Consensus 105 D~V~s~~~l-~~~~-d~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 105 DLAWSNLAV-QWCG-NLSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred EEEEECchh-hhcC-CHHHHHHHHHHHcCCCeEEEEEeC
Confidence 999999988 6666 899999999999999999999975
No 10
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.46 E-value=4.7e-13 Score=142.50 Aligned_cols=102 Identities=17% Similarity=0.120 Sum_probs=84.0
Q ss_pred CCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc----C--CCeEEEEeccccCCCCCCCeeEEEeccc
Q 006633 218 SIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----G--VPALIGVMASIRLPYPSRAFDMAHCSRC 291 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er----g--~~~~~~~~d~~~Lpfpd~sFDlV~~s~~ 291 (637)
.+.+|||||||+|.++..|++.+..++++ |.++.+++.|+++ + ..+.+...++..+++++++||+|+|..+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GI---D~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGV---DAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEE---eCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 34589999999999999999886555555 5566666666543 1 2577888888888888899999999999
Q ss_pred cccCCcCCHHHHHHHHHhcccCCeEEEEEeCCC
Q 006633 292 LIPWGQYADGLYLIEVDRVLRPGGYWILSGPPV 324 (637)
Q Consensus 292 L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~ 324 (637)
++|+. ++..++.++.++|||||.++++.+..
T Consensus 208 LeHv~--d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 208 IEHVA--NPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred HHhcC--CHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 99988 79999999999999999999997643
No 11
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.46 E-value=5.8e-13 Score=138.00 Aligned_cols=108 Identities=19% Similarity=0.126 Sum_probs=83.3
Q ss_pred HHHHhcccCCCCCEEEEECCCCchHHHHHhhc-C--CEEEEcCccccHHHHHHHHHHc--------CCCeEEEEeccccC
Q 006633 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-N--ILAVSFAPRDTHEAQVQFALER--------GVPALIGVMASIRL 276 (637)
Q Consensus 208 L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~--v~~vdisp~Dls~a~i~~A~er--------g~~~~~~~~d~~~L 276 (637)
+.+.+...++ .+|||+|||+|.++..|+++ + ..++++ |+++.|++.|+++ ..++.+..++...+
T Consensus 65 ~~~~~~~~~~--~~VLDlGcGtG~~~~~la~~~~~~~~V~gv---D~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l 139 (261)
T PLN02233 65 AVSWSGAKMG--DRVLDLCCGSGDLAFLLSEKVGSDGKVMGL---DFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL 139 (261)
T ss_pred HHHHhCCCCC--CEEEEECCcCCHHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC
Confidence 3344444443 49999999999999888875 2 233333 4455666655433 23578888999999
Q ss_pred CCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 277 PYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 277 pfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|+++++||+|+++.+++|+. ++..+++|+.|+|||||++++...
T Consensus 140 p~~~~sfD~V~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 140 PFDDCYFDAITMGYGLRNVV--DRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred CCCCCCEeEEEEecccccCC--CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 99999999999999997776 899999999999999999999864
No 12
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.42 E-value=5.8e-13 Score=125.44 Aligned_cols=146 Identities=20% Similarity=0.374 Sum_probs=98.0
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCe
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAF 283 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sF 283 (637)
+.+.+.++.+. .....+|||||||+|.++..|++.+..++.+ |+++.+++. ........+....++++++|
T Consensus 9 ~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~---D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~f 79 (161)
T PF13489_consen 9 YADLLERLLPR-LKPGKRVLDIGCGTGSFLRALAKRGFEVTGV---DISPQMIEK-----RNVVFDNFDAQDPPFPDGSF 79 (161)
T ss_dssp HHHHHHHHHTC-TTTTSEEEEESSTTSHHHHHHHHTTSEEEEE---ESSHHHHHH-----TTSEEEEEECHTHHCHSSSE
T ss_pred HHHHHHHHhcc-cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEE---ECCHHHHhh-----hhhhhhhhhhhhhhccccch
Confidence 34445555542 2234599999999999999998887666665 556555554 23333433344555678999
Q ss_pred eEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCc--cccccCC--CCc--hhhhHHhHhhHHHHHHHhcee
Q 006633 284 DMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNW--ESHWKGW--NRT--TEDLKSEQNGIETIARSLCWK 357 (637)
Q Consensus 284 DlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w--~~~~~~w--~~t--~e~l~~~~~~ie~la~~l~w~ 357 (637)
|+|+|+.+++|+. ++..+|.++.++|||||+++++.+.... ......| ... ........+.++.++++.+++
T Consensus 80 D~i~~~~~l~~~~--d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~ 157 (161)
T PF13489_consen 80 DLIICNDVLEHLP--DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFE 157 (161)
T ss_dssp EEEEEESSGGGSS--HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEE
T ss_pred hhHhhHHHHhhcc--cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCE
Confidence 9999999998888 7999999999999999999999875421 1111111 111 111122345688888888887
Q ss_pred eec
Q 006633 358 KLI 360 (637)
Q Consensus 358 ~v~ 360 (637)
.+.
T Consensus 158 iv~ 160 (161)
T PF13489_consen 158 IVE 160 (161)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 13
>PLN02244 tocopherol O-methyltransferase
Probab=99.41 E-value=1.4e-12 Score=140.02 Aligned_cols=115 Identities=18% Similarity=0.288 Sum_probs=87.2
Q ss_pred HHHHHHHHHhccc---CCCCCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHH----cCC--CeEEEEec
Q 006633 203 AYIDDIGKLINLK---DGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALE----RGV--PALIGVMA 272 (637)
Q Consensus 203 ~~i~~L~~lL~~~---~g~~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~e----rg~--~~~~~~~d 272 (637)
..++.+.+.+... ...+.+|||||||+|.++..|+++ +..++++ |+++.+++.+++ .+. ++.+.++|
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gv---D~s~~~i~~a~~~~~~~g~~~~v~~~~~D 176 (340)
T PLN02244 100 RMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGI---TLSPVQAARANALAAAQGLSDKVSFQVAD 176 (340)
T ss_pred HHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEE---ECCHHHHHHHHHHHHhcCCCCceEEEEcC
Confidence 3444455555441 123458999999999999999986 4444444 445555554433 333 57888999
Q ss_pred cccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 273 SIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 273 ~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
...+|+++++||+|++..+++|+. +...+++++.|+|||||.|++.+.
T Consensus 177 ~~~~~~~~~~FD~V~s~~~~~h~~--d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 177 ALNQPFEDGQFDLVWSMESGEHMP--DKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred cccCCCCCCCccEEEECCchhccC--CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 999999999999999999998887 799999999999999999999863
No 14
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.38 E-value=2.2e-12 Score=128.13 Aligned_cols=107 Identities=15% Similarity=0.271 Sum_probs=76.2
Q ss_pred HHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHH----HcCC-CeEEEEeccccCCCCCCC
Q 006633 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFAL----ERGV-PALIGVMASIRLPYPSRA 282 (637)
Q Consensus 208 L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~----erg~-~~~~~~~d~~~Lpfpd~s 282 (637)
+.+.++..++ .+|||+|||+|.++..|++++..++.+ |+++.+++.++ +.+. ++.+...|...++++ ++
T Consensus 22 l~~~l~~~~~--~~vLDiGcG~G~~a~~La~~g~~V~gv---D~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 95 (197)
T PRK11207 22 VLEAVKVVKP--GKTLDLGCGNGRNSLYLAANGFDVTAW---DKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GE 95 (197)
T ss_pred HHHhcccCCC--CcEEEECCCCCHHHHHHHHCCCEEEEE---eCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CC
Confidence 3444443333 489999999999999999986444444 44444444433 2333 366777777777664 67
Q ss_pred eeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 283 FDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 283 FDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
||+|+|+.+++++..++...++.++.++|||||++++.
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 99999999986666446789999999999999997654
No 15
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.37 E-value=2.7e-12 Score=132.08 Aligned_cols=107 Identities=21% Similarity=0.260 Sum_probs=83.9
Q ss_pred HHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCe
Q 006633 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAF 283 (637)
Q Consensus 206 ~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sF 283 (637)
..+.+.++...+ .+|||||||+|.++..|+++ +..++++ |+++.+++.|++++ +.+..+|...++ ++++|
T Consensus 19 ~~ll~~l~~~~~--~~vLDlGcG~G~~~~~l~~~~p~~~v~gv---D~s~~~~~~a~~~~--~~~~~~d~~~~~-~~~~f 90 (255)
T PRK14103 19 YDLLARVGAERA--RRVVDLGCGPGNLTRYLARRWPGAVIEAL---DSSPEMVAAARERG--VDARTGDVRDWK-PKPDT 90 (255)
T ss_pred HHHHHhCCCCCC--CEEEEEcCCCCHHHHHHHHHCCCCEEEEE---ECCHHHHHHHHhcC--CcEEEcChhhCC-CCCCc
Confidence 345555554443 49999999999999999887 4455555 66778888887765 556677777764 56899
Q ss_pred eEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 284 DMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 284 DlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|+|+|+.+++|+. ++..+++++.++|||||++++..+
T Consensus 91 D~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 91 DVVVSNAALQWVP--EHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred eEEEEehhhhhCC--CHHHHHHHHHHhCCCCcEEEEEcC
Confidence 9999999996655 899999999999999999999864
No 16
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.37 E-value=8.7e-11 Score=132.52 Aligned_cols=115 Identities=13% Similarity=0.161 Sum_probs=73.5
Q ss_pred CCceeEeeecccchhhhhhhcCC----CeEEEEeccCCCCcchhHHHHhhcccchhhccccc----cCCCC-Cccceeee
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD----PLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEA----MSTYP-RTYDLIHA 546 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~----~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~----~~~yp-~t~Dl~H~ 546 (637)
..-..+||+|||.|.|.+.++.. +++.+-+-..... ..+..+.++||-. +.-.|.. ..-+| .+.|-||.
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~-~~~~~~~~~~l~N-~~~~~~~~~~~~~~~~~~sv~~i~i 423 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVA-NVLKLAGEQNITN-FLLFPNNLDLILNDLPNNSLDGIYI 423 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHH-HHHHHHHHcCCCe-EEEEcCCHHHHHHhcCcccccEEEE
Confidence 45789999999999999999765 3344333332221 2345556667622 1122322 23356 88998887
Q ss_pred cccccc-------CCCCcCHHHHHHHHhhcccCCcEEEE-EeCHHHHHHHHHHHhc
Q 006633 547 DSIFSL-------YKDRCEMEDVLLEMDRILRPEGSVII-RDDVDILVKIKSITDG 594 (637)
Q Consensus 547 ~~lfs~-------~~~~c~~~~~l~e~dRiLrPgG~~i~-~d~~~~~~~~~~~~~~ 594 (637)
.|.. .+.|=--+..|-++-|+|+|||.+.+ ||..+....+.+.+..
T Consensus 424 --~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~ 477 (506)
T PRK01544 424 --LFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQ 477 (506)
T ss_pred --ECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 5651 23333335899999999999999888 5777776666655443
No 17
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.35 E-value=6.8e-12 Score=124.41 Aligned_cols=109 Identities=14% Similarity=0.204 Sum_probs=75.8
Q ss_pred HHHHhcccCCCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeE
Q 006633 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDM 285 (637)
Q Consensus 208 L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDl 285 (637)
+.+.+.... ..+|||+|||+|.++.+|++++ |+++|+++..+..+.. .+.+.++++.+...+....+++ ++||+
T Consensus 22 l~~~~~~~~--~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~ 97 (195)
T TIGR00477 22 VREAVKTVA--PCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLD-MKARENLPLRTDAYDINAAALN-EDYDF 97 (195)
T ss_pred HHHHhccCC--CCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHH-HHHHhCCCceeEeccchhcccc-CCCCE
Confidence 334444333 3489999999999999999986 4455554433332221 2234455666666666555654 57999
Q ss_pred EEeccccccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 286 AHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 286 V~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
|+++.+++++..++...+++++.|+|||||++++.
T Consensus 98 I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 98 IFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 99999997776436778999999999999996665
No 18
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.35 E-value=7.8e-12 Score=130.11 Aligned_cols=159 Identities=20% Similarity=0.312 Sum_probs=103.9
Q ss_pred CCCCCCCccccccCCCCCCCCCCCCCcccccccccCCCCchhhhhhhhcceEeecCCeeecCCCCCCCcccHHHHHHHHH
Q 006633 130 HCPEKTELLKCRVPAPHGYTVPFRWPESRQFAWYANVPHKELTVEKKNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIG 209 (637)
Q Consensus 130 ~C~p~~~~~~clvp~P~~Y~~P~pwP~Srd~~wy~n~p~~~L~~~k~~q~W~~~~g~~~~Fpg~g~~f~~g~~~~i~~L~ 209 (637)
.|+. -+|+..+..||..-+|-...+. .+..+...... ..+. |...|. |..-.+...+.+.
T Consensus 20 ~C~~----~h~fd~a~~Gy~~ll~~~~~~~----~~~~d~~~~~~-ar~~----------fl~~g~-y~~l~~~i~~~l~ 79 (272)
T PRK11088 20 ICPQ----NHQFDCAKEGYVNLLPVQHKRS----KDPGDNKEMMQ-ARRA----------FLDAGH-YQPLRDAVANLLA 79 (272)
T ss_pred EcCC----CCCCccccCceEEeccccccCC----CCCCcCHHHHH-HHHH----------HHHCCC-hHHHHHHHHHHHH
Confidence 7887 3899999999988876211111 01112111111 1111 211111 2222233333343
Q ss_pred HHhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCee
Q 006633 210 KLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFD 284 (637)
Q Consensus 210 ~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFD 284 (637)
+.++ ....+|||+|||+|.++..|++. +..++++ |+++.+++.|.++..++.+.+++...+|+++++||
T Consensus 80 ~~l~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~gi---D~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD 153 (272)
T PRK11088 80 ERLD---EKATALLDIGCGEGYYTHALADALPEITTMQLFGL---DISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLD 153 (272)
T ss_pred HhcC---CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEE---CCCHHHHHHHHHhCCCCeEEEeecccCCCcCCcee
Confidence 3332 22348999999999999998765 1244555 77888998888887788899999999999999999
Q ss_pred EEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCC
Q 006633 285 MAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPP 323 (637)
Q Consensus 285 lV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp 323 (637)
+|++..+ + ..+.++.|+|||||+|++..|.
T Consensus 154 ~I~~~~~----~-----~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 154 AIIRIYA----P-----CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred EEEEecC----C-----CCHHHHHhhccCCCEEEEEeCC
Confidence 9998653 1 1358999999999999999774
No 19
>PRK05785 hypothetical protein; Provisional
Probab=99.32 E-value=1.5e-11 Score=124.84 Aligned_cols=89 Identities=19% Similarity=0.171 Sum_probs=74.6
Q ss_pred CCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCCc
Q 006633 219 IRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~ 297 (637)
..+|||||||+|.++..|+++ +..++++ |+++.|++.|+++. .+.+++...+|+++++||+|+++.+++|+.
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gv---D~S~~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~- 124 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVAL---DYAENMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSFALHASD- 124 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEE---CCCHHHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecChhhccC-
Confidence 458999999999999999887 4555555 67788888887653 345778899999999999999999997666
Q ss_pred CCHHHHHHHHHhcccCCe
Q 006633 298 YADGLYLIEVDRVLRPGG 315 (637)
Q Consensus 298 ~d~~~~L~ei~RvLKPGG 315 (637)
+.+.+++|+.|+|||.+
T Consensus 125 -d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 125 -NIEKVIAEFTRVSRKQV 141 (226)
T ss_pred -CHHHHHHHHHHHhcCce
Confidence 89999999999999953
No 20
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.32 E-value=1.6e-11 Score=124.02 Aligned_cols=110 Identities=24% Similarity=0.397 Sum_probs=83.2
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHc----C-CCeEEEEecc
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALER----G-VPALIGVMAS 273 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~er----g-~~~~~~~~d~ 273 (637)
..+.+.+.+...++. +|||+|||+|.++..+++. .++++|+ ++.+++.+.++ + ..+.+...+.
T Consensus 33 ~~~~~l~~l~~~~~~--~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~-----s~~~~~~a~~~~~~~~~~~v~~~~~d~ 105 (231)
T TIGR02752 33 WRKDTMKRMNVQAGT--SALDVCCGTADWSIALAEAVGPEGHVIGLDF-----SENMLSVGRQKVKDAGLHNVELVHGNA 105 (231)
T ss_pred HHHHHHHhcCCCCCC--EEEEeCCCcCHHHHHHHHHhCCCCEEEEEEC-----CHHHHHHHHHHHHhcCCCceEEEEech
Confidence 334566666555544 9999999999999998875 2455555 44555444432 2 2467788888
Q ss_pred ccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 274 IRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 274 ~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
..+++++++||+|++..+++++. +...+++++.++|||||.+++..+
T Consensus 106 ~~~~~~~~~fD~V~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 106 MELPFDDNSFDYVTIGFGLRNVP--DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred hcCCCCCCCccEEEEecccccCC--CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 88888889999999999886655 789999999999999999998754
No 21
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.31 E-value=8.4e-12 Score=130.22 Aligned_cols=123 Identities=22% Similarity=0.376 Sum_probs=86.9
Q ss_pred CCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHH----cCC-
Q 006633 191 PGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALE----RGV- 264 (637)
Q Consensus 191 pg~g~~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~e----rg~- 264 (637)
+.+...+.+.....++.+.+.+.+++|. +|||||||.|.++.+++++ ++.++++ .+++.|.+.+++ .++
T Consensus 37 ~~~~~~Le~AQ~~k~~~~~~~~~l~~G~--~vLDiGcGwG~~~~~~a~~~g~~v~gi---tlS~~Q~~~a~~~~~~~gl~ 111 (273)
T PF02353_consen 37 DEGDDTLEEAQERKLDLLCEKLGLKPGD--RVLDIGCGWGGLAIYAAERYGCHVTGI---TLSEEQAEYARERIREAGLE 111 (273)
T ss_dssp SSTT--HHHHHHHHHHHHHTTTT--TT---EEEEES-TTSHHHHHHHHHH--EEEEE---ES-HHHHHHHHHHHHCSTSS
T ss_pred CCchhhHHHHHHHHHHHHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHcCcEEEEE---ECCHHHHHHHHHHHHhcCCC
Confidence 3333334444555666777777777766 9999999999999999999 8888887 678888877654 344
Q ss_pred -CeEEEEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 265 -PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 265 -~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
.+.+...|...++. +||.|++..+++|+...+...+++++.++|||||.+++..
T Consensus 112 ~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 112 DRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp STEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred CceEEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 36777777766654 8999999999999975478999999999999999999864
No 22
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.31 E-value=1.1e-11 Score=127.64 Aligned_cols=111 Identities=20% Similarity=0.107 Sum_probs=82.5
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc----CC--CeEEEEeccccCC-CC
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLP-YP 279 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er----g~--~~~~~~~d~~~Lp-fp 279 (637)
.+.+++........+|||+|||+|.++..|++++..++.+ |+++.+++.|+++ +. .+.+..++...++ ++
T Consensus 33 ~~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~~v~~v---D~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~ 109 (255)
T PRK11036 33 DLDRLLAELPPRPLRVLDAGGGEGQTAIKLAELGHQVILC---DLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL 109 (255)
T ss_pred HHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHcCCEEEEE---ECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc
Confidence 3444443222334599999999999999999986555444 5555666555543 32 4677777777664 66
Q ss_pred CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 280 SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 280 d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+++||+|++..+++|+. ++..++.++.++|||||++++...
T Consensus 110 ~~~fD~V~~~~vl~~~~--~~~~~l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 110 ETPVDLILFHAVLEWVA--DPKSVLQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred CCCCCEEEehhHHHhhC--CHHHHHHHHHHHcCCCeEEEEEEE
Confidence 78999999999997666 789999999999999999998754
No 23
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.30 E-value=1.5e-11 Score=126.47 Aligned_cols=110 Identities=20% Similarity=0.224 Sum_probs=84.8
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCC
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRA 282 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~s 282 (637)
.+.+...++..+ +.+|||||||+|.++..|+++ +..++.+ |+++.+++.|+++...+.+...|...+. ++++
T Consensus 20 ~~~ll~~~~~~~--~~~vLDiGcG~G~~~~~la~~~~~~~v~gv---D~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~ 93 (258)
T PRK01683 20 ARDLLARVPLEN--PRYVVDLGCGPGNSTELLVERWPAARITGI---DSSPAMLAEARSRLPDCQFVEADIASWQ-PPQA 93 (258)
T ss_pred HHHHHhhCCCcC--CCEEEEEcccCCHHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHhCCCCeEEECchhccC-CCCC
Confidence 334445554444 349999999999999999876 3344555 5667788888877666778888876664 4568
Q ss_pred eeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 283 FDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 283 FDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
||+|+++.++++.. +...+++++.++|||||.+++..+
T Consensus 94 fD~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 94 LDLIFANASLQWLP--DHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred ccEEEEccChhhCC--CHHHHHHHHHHhcCCCcEEEEECC
Confidence 99999999995444 789999999999999999999854
No 24
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.29 E-value=3.1e-11 Score=135.02 Aligned_cols=110 Identities=22% Similarity=0.395 Sum_probs=85.8
Q ss_pred HHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHc----CCCeEEEEeccccCCCCC
Q 006633 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLPYPS 280 (637)
Q Consensus 206 ~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~er----g~~~~~~~~d~~~Lpfpd 280 (637)
+.+.+.+...+ +.+|||||||+|.++..|++. +..++++ |+++.+++.|+++ ...+.+...|...+++++
T Consensus 256 e~l~~~~~~~~--~~~vLDiGcG~G~~~~~la~~~~~~v~gv---DiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~ 330 (475)
T PLN02336 256 KEFVDKLDLKP--GQKVLDVGCGIGGGDFYMAENFDVHVVGI---DLSVNMISFALERAIGRKCSVEFEVADCTKKTYPD 330 (475)
T ss_pred HHHHHhcCCCC--CCEEEEEeccCCHHHHHHHHhcCCEEEEE---ECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCC
Confidence 34444444433 459999999999999988875 4444444 5556666666543 235778888888888988
Q ss_pred CCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 281 RAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 281 ~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++||+|+|..+++|+. ++..++.++.|+|||||.+++..+
T Consensus 331 ~~fD~I~s~~~l~h~~--d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 331 NSFDVIYSRDTILHIQ--DKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred CCEEEEEECCcccccC--CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 9999999999998887 799999999999999999999865
No 25
>PRK08317 hypothetical protein; Provisional
Probab=99.29 E-value=9.6e-11 Score=117.30 Aligned_cols=114 Identities=29% Similarity=0.399 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHc----CCCeEEEEeccc
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALER----GVPALIGVMASI 274 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~er----g~~~~~~~~d~~ 274 (637)
..+.+.+.+.+...++. +|||+|||+|.++..++++. ..++.+ |+++.+++.++++ ...+.+...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~~a~~~~~~~~v~~~---d~~~~~~~~a~~~~~~~~~~~~~~~~d~~ 79 (241)
T PRK08317 5 RRYRARTFELLAVQPGD--RVLDVGCGPGNDARELARRVGPEGRVVGI---DRSEAMLALAKERAAGLGPNVEFVRGDAD 79 (241)
T ss_pred HHHHHHHHHHcCCCCCC--EEEEeCCCCCHHHHHHHHhcCCCcEEEEE---eCCHHHHHHHHHHhhCCCCceEEEecccc
Confidence 44556666776665544 99999999999999988752 233333 4455555555544 345778888888
Q ss_pred cCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 275 RLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 275 ~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.+++++++||+|++..+++|+. ++..+++++.++|||||++++..+
T Consensus 80 ~~~~~~~~~D~v~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 80 GLPFPDGSFDAVRSDRVLQHLE--DPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred cCCCCCCCceEEEEechhhccC--CHHHHHHHHHHHhcCCcEEEEEec
Confidence 8888889999999999998887 799999999999999999999875
No 26
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.28 E-value=1.7e-11 Score=109.21 Aligned_cols=99 Identities=21% Similarity=0.279 Sum_probs=71.2
Q ss_pred CCEEEEECCCCchHHHHHhh--cCCEEEEcCccccHHHHHHHHHHc------CCCeEEEEecc-ccCCCCCCCeeEEEec
Q 006633 219 IRTAIDTGCGVASWGAYLMS--RNILAVSFAPRDTHEAQVQFALER------GVPALIGVMAS-IRLPYPSRAFDMAHCS 289 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~--~~v~~vdisp~Dls~a~i~~A~er------g~~~~~~~~d~-~~Lpfpd~sFDlV~~s 289 (637)
+.+|||||||+|.++..+++ .+..++.+ |+++.+++.|+++ ..++.+...|. ..... ...||+|++.
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~ 77 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGV---DISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICS 77 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEE---ESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEEC
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEE---eCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEEC
Confidence 34899999999999999999 45444444 4444444444433 25688888888 33333 3569999999
Q ss_pred c-ccccCCc-CCHHHHHHHHHhcccCCeEEEEEe
Q 006633 290 R-CLIPWGQ-YADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 290 ~-~L~h~~~-~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
. +++++.. ++...+++++.+.|+|||+|++..
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 8 5543432 157789999999999999999975
No 27
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.27 E-value=4.1e-11 Score=127.94 Aligned_cols=109 Identities=18% Similarity=0.180 Sum_probs=79.6
Q ss_pred HHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHH---cCCCeEEEEeccccCCCC
Q 006633 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALE---RGVPALIGVMASIRLPYP 279 (637)
Q Consensus 206 ~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~e---rg~~~~~~~~d~~~Lpfp 279 (637)
+.+...++... +++|||||||+|.++..+++.+ |+++|.++.++... +...+ ...++.+..++...+|+
T Consensus 112 ~~l~~~l~~l~--g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~--~a~~~~~~~~~~i~~~~~d~e~lp~- 186 (322)
T PRK15068 112 DRVLPHLSPLK--GRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQF--EAVRKLLGNDQRAHLLPLGIEQLPA- 186 (322)
T ss_pred HHHHHhhCCCC--CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHH--HHHHHhcCCCCCeEEEeCCHHHCCC-
Confidence 34455554333 4599999999999999999874 44444433222211 11111 12357888888889998
Q ss_pred CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 280 SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 280 d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+++||+|+|..+++|.. ++..+++++.++|||||.|++..
T Consensus 187 ~~~FD~V~s~~vl~H~~--dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 187 LKAFDTVFSMGVLYHRR--SPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred cCCcCEEEECChhhccC--CHHHHHHHHHHhcCCCcEEEEEE
Confidence 78999999999998876 79999999999999999999974
No 28
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.27 E-value=5.1e-12 Score=111.52 Aligned_cols=91 Identities=25% Similarity=0.362 Sum_probs=73.4
Q ss_pred EEEECCCCchHHHHHhhcC-----CEEEEcCccccHHHHHHHHHHcC----CCeEEEEeccccCCCCCCCeeEEEeccc-
Q 006633 222 AIDTGCGVASWGAYLMSRN-----ILAVSFAPRDTHEAQVQFALERG----VPALIGVMASIRLPYPSRAFDMAHCSRC- 291 (637)
Q Consensus 222 VLDIGCGtG~~a~~La~~~-----v~~vdisp~Dls~a~i~~A~erg----~~~~~~~~d~~~Lpfpd~sFDlV~~s~~- 291 (637)
|||+|||+|..+..+++.. ...+.+ |+++.+++.++++. .++.+.+.|...+++.+++||+|+|+..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gv---D~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGV---DISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEE---ES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEE---ECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCc
Confidence 7999999999999998762 555555 77778887777654 6889999999999988999999999655
Q ss_pred cccCCcCCHHHHHHHHHhcccCCe
Q 006633 292 LIPWGQYADGLYLIEVDRVLRPGG 315 (637)
Q Consensus 292 L~h~~~~d~~~~L~ei~RvLKPGG 315 (637)
++|+.+++...+++++.++|||||
T Consensus 78 ~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 78 LHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCC
Confidence 888776577899999999999998
No 29
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.25 E-value=3.4e-11 Score=121.72 Aligned_cols=104 Identities=17% Similarity=0.161 Sum_probs=83.6
Q ss_pred CCCCCEEEEECCCCchHHHHHhhc----------CCEEEEcCccccHHHHHHHHHHcCC----CeEEEEeccccCCCCCC
Q 006633 216 DGSIRTAIDTGCGVASWGAYLMSR----------NILAVSFAPRDTHEAQVQFALERGV----PALIGVMASIRLPYPSR 281 (637)
Q Consensus 216 ~g~~r~VLDIGCGtG~~a~~La~~----------~v~~vdisp~Dls~a~i~~A~erg~----~~~~~~~d~~~Lpfpd~ 281 (637)
++.+.++||++||||..+..+.+. .|++.|+.|.++..+..+ |.+++. ...|..+|++.|||+++
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqR-a~~~~l~~~~~~~w~~~dAE~LpFdd~ 176 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQR-AKKRPLKASSRVEWVEGDAEDLPFDDD 176 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHH-HhhcCCCcCCceEEEeCCcccCCCCCC
Confidence 334469999999999999888765 467777766555544332 323332 27788899999999999
Q ss_pred CeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 282 AFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 282 sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+||+...++.+..++ ++++.|+|++|||||||.|.+-..
T Consensus 177 s~D~yTiafGIRN~t--h~~k~l~EAYRVLKpGGrf~cLeF 215 (296)
T KOG1540|consen 177 SFDAYTIAFGIRNVT--HIQKALREAYRVLKPGGRFSCLEF 215 (296)
T ss_pred cceeEEEecceecCC--CHHHHHHHHHHhcCCCcEEEEEEc
Confidence 999999999998998 899999999999999999998754
No 30
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.25 E-value=3.5e-11 Score=124.99 Aligned_cols=125 Identities=22% Similarity=0.334 Sum_probs=98.1
Q ss_pred cCCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHH----cCC
Q 006633 190 FPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALE----RGV 264 (637)
Q Consensus 190 Fpg~g~~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~e----rg~ 264 (637)
|+.....+.+.....++.+.+.+.+++|. +|||||||.|.++.+++++ ++.++++ ++|++|...+++ +|.
T Consensus 46 f~~~~~tL~eAQ~~k~~~~~~kl~L~~G~--~lLDiGCGWG~l~~~aA~~y~v~V~Gv---TlS~~Q~~~~~~r~~~~gl 120 (283)
T COG2230 46 FEDPDMTLEEAQRAKLDLILEKLGLKPGM--TLLDIGCGWGGLAIYAAEEYGVTVVGV---TLSEEQLAYAEKRIAARGL 120 (283)
T ss_pred eCCCCCChHHHHHHHHHHHHHhcCCCCCC--EEEEeCCChhHHHHHHHHHcCCEEEEe---eCCHHHHHHHHHHHHHcCC
Confidence 55554445555666777888888888877 9999999999999999998 7888888 777777776654 354
Q ss_pred C--eEEEEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 265 P--ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 265 ~--~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
. +.+...|-..+ .+.||-|++..+++|+..++...+++.+.++|+|||.+++-+-
T Consensus 121 ~~~v~v~l~d~rd~---~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I 177 (283)
T COG2230 121 EDNVEVRLQDYRDF---EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSI 177 (283)
T ss_pred CcccEEEecccccc---ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEe
Confidence 4 55554444333 3449999999999999977899999999999999999999753
No 31
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.24 E-value=5.2e-11 Score=124.96 Aligned_cols=98 Identities=15% Similarity=0.233 Sum_probs=74.8
Q ss_pred CEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHH----HHcCCCeEEEEeccccCCCCCCCeeEEEeccccccC
Q 006633 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFA----LERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A----~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~ 295 (637)
.+|||+|||+|.++.+|++++..++.+ |.++.+++.+ .+.++++.+...|....++ +++||+|+++.+++++
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~~V~av---D~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGFDVTAV---DINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFL 197 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCCEEEEE---ECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhC
Confidence 389999999999999999986544444 4444544433 3446677777777666555 6789999999999777
Q ss_pred CcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 296 GQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 296 ~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
..++...+++++.++|+|||++++..
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 64467889999999999999977754
No 32
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.24 E-value=7.4e-11 Score=118.40 Aligned_cols=112 Identities=21% Similarity=0.228 Sum_probs=84.4
Q ss_pred HHHHHHhcccC-CCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCCCCCC
Q 006633 206 DDIGKLINLKD-GSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSR 281 (637)
Q Consensus 206 ~~L~~lL~~~~-g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lpfpd~ 281 (637)
..+.+.+.... ....+|||+|||+|.++..|++.. ..++.+ |++..+++.+.++.. ++.+...+...++++++
T Consensus 21 ~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~---D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 97 (240)
T TIGR02072 21 KRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIAL---DISAGMLAQAKTKLSENVQFICGDAEKLPLEDS 97 (240)
T ss_pred HHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEE---eChHHHHHHHHHhcCCCCeEEecchhhCCCCCC
Confidence 33444444221 234589999999999999998873 322333 556667766665542 46777888888898899
Q ss_pred CeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 282 AFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 282 sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+||+|+++.+++|.. +...++.++.++|||||.+++..+
T Consensus 98 ~fD~vi~~~~l~~~~--~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 98 SFDLIVSNLALQWCD--DLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred ceeEEEEhhhhhhcc--CHHHHHHHHHHHcCCCcEEEEEeC
Confidence 999999999995554 799999999999999999999875
No 33
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.23 E-value=6.5e-11 Score=126.89 Aligned_cols=130 Identities=20% Similarity=0.218 Sum_probs=92.5
Q ss_pred CCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcC--CCeEEEEeccccCCCCCCCeeEEEecccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLPYPSRAFDMAHCSRCL 292 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg--~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L 292 (637)
..+|||||||+|.++..+++. .++++ |.++.+++.|+++. .++.+...|...+++++++||+|+++.++
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgV-----D~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L 188 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTIL-----DQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEE-----ECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChh
Confidence 358999999999998888764 34444 44555666655442 34667888888999999999999999999
Q ss_pred ccCCcCCHHHHHHHHHhcccCCeEEEEEeCC--CCccccccC--CCCchhhhHHhHhhHHHHHHHhceeeec
Q 006633 293 IPWGQYADGLYLIEVDRVLRPGGYWILSGPP--VNWESHWKG--WNRTTEDLKSEQNGIETIARSLCWKKLI 360 (637)
Q Consensus 293 ~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp--~~w~~~~~~--w~~t~e~l~~~~~~ie~la~~l~w~~v~ 360 (637)
+|+. +...+++++.|+|||||.+++..+. ..|..+... |.. ....+++.+++++.+|+.+.
T Consensus 189 ~~~~--d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~-----~~t~eEl~~lL~~aGF~~V~ 253 (340)
T PLN02490 189 EYWP--DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWML-----FPKEEEYIEWFTKAGFKDVK 253 (340)
T ss_pred hhCC--CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhcc-----CCCHHHHHHHHHHCCCeEEE
Confidence 8777 7889999999999999999987642 122221100 110 11234566778888887765
No 34
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.23 E-value=1.7e-10 Score=122.63 Aligned_cols=108 Identities=16% Similarity=0.086 Sum_probs=77.6
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCC-EEEEcCccccHHHHHH---HHHH---cCCCeEEEEeccccCCCC
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQ---FALE---RGVPALIGVMASIRLPYP 279 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v-~~vdisp~Dls~a~i~---~A~e---rg~~~~~~~~d~~~Lpfp 279 (637)
.+...+.... +++|||||||+|.++..++..+. .+++++ .+..++. .++. ....+.+...+...+|..
T Consensus 112 ~~l~~l~~~~--g~~VLDvGCG~G~~~~~~~~~g~~~v~GiD---pS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~ 186 (314)
T TIGR00452 112 RVLPHLSPLK--GRTILDVGCGSGYHMWRMLGHGAKSLVGID---PTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL 186 (314)
T ss_pred HHHHhcCCCC--CCEEEEeccCCcHHHHHHHHcCCCEEEEEc---CCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC
Confidence 3444443333 45999999999999999888753 355553 3333332 2222 123466777777788764
Q ss_pred CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 280 SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 280 d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.+||+|+|+.+++|+. ++..+|.++.|+|||||.|++...
T Consensus 187 -~~FD~V~s~gvL~H~~--dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 187 -YAFDTVFSMGVLYHRK--SPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred -CCcCEEEEcchhhccC--CHHHHHHHHHHhcCCCCEEEEEEE
Confidence 4899999999998887 799999999999999999999753
No 35
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.23 E-value=1e-10 Score=120.12 Aligned_cols=117 Identities=17% Similarity=0.112 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHc----CC--CeEEEE
Q 006633 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER----GV--PALIGV 270 (637)
Q Consensus 201 ~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~er----g~--~~~~~~ 270 (637)
.+.....+..++......+.+|||||||+|..+..|++. +..++.+ |+++.+++.|+++ +. .+.+..
T Consensus 39 y~~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gv---D~S~~ml~~A~~~~~~~~~~~~v~~~~ 115 (247)
T PRK15451 39 YSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAI---DNSPAMIERCRRHIDAYKAPTPVDVIE 115 (247)
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEE---eCCHHHHHHHHHHHHhcCCCCCeEEEe
Confidence 344444444443322223458999999999998888762 3344444 4455555555433 22 577888
Q ss_pred eccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 271 MASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 271 ~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.+...+|++ .+|+|+++.+++|+.+++...+++++.++|||||.|+++..
T Consensus 116 ~d~~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 116 GDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred CChhhCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 888887765 48999999999777653557899999999999999999863
No 36
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.23 E-value=6.4e-11 Score=120.69 Aligned_cols=99 Identities=16% Similarity=0.117 Sum_probs=75.3
Q ss_pred CCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHc------CCCeEEEEeccccCCCCCCCeeEEEe
Q 006633 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER------GVPALIGVMASIRLPYPSRAFDMAHC 288 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~er------g~~~~~~~~d~~~Lpfpd~sFDlV~~ 288 (637)
..+|||+|||+|.++..++++ +..++++ |+++.+++.|+++ ..++.+...|...++++ .+|+|++
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gv---D~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~ 128 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGI---DNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVIL 128 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEE---eCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEee
Confidence 458999999999999988874 3334444 4455555555433 23577888888888775 4899999
Q ss_pred ccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 289 SRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 289 s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+.+++|+.+++...+++++.|+|||||.|+++.+
T Consensus 129 ~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 129 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred ecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 9999777643568899999999999999999865
No 37
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.21 E-value=5.4e-11 Score=112.74 Aligned_cols=98 Identities=23% Similarity=0.347 Sum_probs=78.0
Q ss_pred CCEEEEECCCCchHHHHHhh-c--CCEEEEcCccccHHHHHHHHHH----cCC-CeEEEEeccccCC--CCCCCeeEEEe
Q 006633 219 IRTAIDTGCGVASWGAYLMS-R--NILAVSFAPRDTHEAQVQFALE----RGV-PALIGVMASIRLP--YPSRAFDMAHC 288 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~-~--~v~~vdisp~Dls~a~i~~A~e----rg~-~~~~~~~d~~~Lp--fpd~sFDlV~~ 288 (637)
..+|||+|||+|.++..|++ . +..++++ |+++.+++.|++ .+. ++.+.+.|...++ ++ +.||+|++
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gv---D~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~ 79 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGV---DISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIIS 79 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEE---ESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEE
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEE---ECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEE
Confidence 34899999999999999994 3 4444444 556666666654 344 5899999998887 66 89999999
Q ss_pred ccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 289 SRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 289 s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
..+++|+. +...+++++.++|++||.+++..+
T Consensus 80 ~~~l~~~~--~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 80 NGVLHHFP--DPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp ESTGGGTS--HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCchhhcc--CHHHHHHHHHHHcCCCcEEEEEEC
Confidence 99996666 788999999999999999999875
No 38
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.21 E-value=7.9e-11 Score=115.67 Aligned_cols=143 Identities=24% Similarity=0.321 Sum_probs=108.5
Q ss_pred HHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCee
Q 006633 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFD 284 (637)
Q Consensus 206 ~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFD 284 (637)
+.|.++++ +++ +|||+|||.|.+..+|.+. ++.+.++ +++++.+..+.++|+++.-..++..-..|++++||
T Consensus 5 ~~I~~~I~--pgs--rVLDLGCGdG~LL~~L~~~k~v~g~Gv---Eid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD 77 (193)
T PF07021_consen 5 QIIAEWIE--PGS--RVLDLGCGDGELLAYLKDEKQVDGYGV---EIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFD 77 (193)
T ss_pred HHHHHHcC--CCC--EEEecCCCchHHHHHHHHhcCCeEEEE---ecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCcc
Confidence 34666654 444 9999999999999999884 8888888 78888898999999886555444332349999999
Q ss_pred EEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCC-Ccccc---------------ccCCCCchhhhHHhHhhHH
Q 006633 285 MAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPV-NWESH---------------WKGWNRTTEDLKSEQNGIE 348 (637)
Q Consensus 285 lV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~-~w~~~---------------~~~w~~t~e~l~~~~~~ie 348 (637)
.|+.+.++.+.. +++.+|+|+.|+ |...+++-|+. +|..+ ...|..|+.-..-.....+
T Consensus 78 ~VIlsqtLQ~~~--~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe 152 (193)
T PF07021_consen 78 YVILSQTLQAVR--RPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFE 152 (193)
T ss_pred EEehHhHHHhHh--HHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHH
Confidence 999999998887 799999999777 66788887654 34222 2237777666666677788
Q ss_pred HHHHHhceeeec
Q 006633 349 TIARSLCWKKLI 360 (637)
Q Consensus 349 ~la~~l~w~~v~ 360 (637)
++++.++++...
T Consensus 153 ~lc~~~~i~I~~ 164 (193)
T PF07021_consen 153 DLCRELGIRIEE 164 (193)
T ss_pred HHHHHCCCEEEE
Confidence 888888876554
No 39
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.20 E-value=9.7e-11 Score=115.95 Aligned_cols=208 Identities=17% Similarity=0.234 Sum_probs=139.6
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCee
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFD 284 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFD 284 (637)
.|...++... .++|.|+|||+|..+..|+++ +..+.++ |.+.+|+..|+++.+++.|..+|..... ++..+|
T Consensus 21 dLla~Vp~~~--~~~v~DLGCGpGnsTelL~~RwP~A~i~Gi---DsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~d 94 (257)
T COG4106 21 DLLARVPLER--PRRVVDLGCGPGNSTELLARRWPDAVITGI---DSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTD 94 (257)
T ss_pred HHHhhCCccc--cceeeecCCCCCHHHHHHHHhCCCCeEeec---cCCHHHHHHHHHhCCCCceecccHhhcC-CCCccc
Confidence 3444555443 558999999999999999998 5666677 7888999999999999999999987775 567899
Q ss_pred EEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeecccCc
Q 006633 285 MAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKD 364 (637)
Q Consensus 285 lV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~~~~~ 364 (637)
+++++.+| ||.+ |...+|..+...|.|||.|.+..|. |+.. .....+.+.++..-|........
T Consensus 95 llfaNAvl-qWlp-dH~~ll~rL~~~L~Pgg~LAVQmPd-N~de-------------psH~~mr~~A~~~p~~~~l~~~~ 158 (257)
T COG4106 95 LLFANAVL-QWLP-DHPELLPRLVSQLAPGGVLAVQMPD-NLDE-------------PSHRLMRETADEAPFAQELGGRG 158 (257)
T ss_pred hhhhhhhh-hhcc-ccHHHHHHHHHhhCCCceEEEECCC-ccCc-------------hhHHHHHHHHhcCchhhhhCccc
Confidence 99999999 8888 8999999999999999999998872 2111 11234666777666655443222
Q ss_pred EEEEeccCCCc-cccccccccCCCCCcccCCcCCccccccccccccCcccchhhhhcCCccccCccccccCCcccccCcc
Q 006633 365 LAIWQKPTNHV-HCIANRRVFKKPRFCKAQDPDMAWYTKMETCLTPLPEVSNIKEIAGGQLTKWPERLNAIPPRVNRGAV 443 (637)
Q Consensus 365 ~aIWqKP~~~~-~c~~~~~~~~~~~~c~~~~~~~~wy~~l~~ci~~~p~~~~~~~~~~~~~~~wp~rl~~~p~~i~~~~~ 443 (637)
. -++|+-.. .+|.... +--|.-+-=..++|.+|..-- ...+++.|..+.+|=+||.
T Consensus 159 ~--~r~~v~s~a~Yy~lLa----~~~~rvDiW~T~Y~h~l~~a~------aIvdWvkgTgLrP~L~~L~----------- 215 (257)
T COG4106 159 L--TRAPLPSPAAYYELLA----PLACRVDIWHTTYYHQLPGAD------AIVDWVKGTGLRPYLDRLD----------- 215 (257)
T ss_pred c--ccCCCCCHHHHHHHhC----cccceeeeeeeeccccCCCcc------chhhheeccccceeccccC-----------
Confidence 2 25554322 3444332 224442222233444443321 1234666666777666663
Q ss_pred cCcchhcchhhHHHHHHHHHHHHHhhh
Q 006633 444 DGVTAEMFREDTALWKKRVTYYKSVDY 470 (637)
Q Consensus 444 ~g~~~~~f~~d~~~w~~~v~~y~~~~~ 470 (637)
.+.|++-+..|..++.
T Consensus 216 -----------e~~~~~FL~~Y~~~l~ 231 (257)
T COG4106 216 -----------EEERQRFLDRYLALLA 231 (257)
T ss_pred -----------HHHHHHHHHHHHHHHH
Confidence 3556777778887664
No 40
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.19 E-value=1.5e-10 Score=115.81 Aligned_cols=97 Identities=16% Similarity=0.068 Sum_probs=79.4
Q ss_pred CCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCC
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~ 296 (637)
..+|||||||+|.++..|++. +..++++ |+++.+++.|+++...+.+..++... |+++++||+|+++.+++|+.
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~gi---DiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFKHIYGV---EINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCCeEEEE---ECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCC
Confidence 348999999999999999876 4555555 77888888888765566777777766 88999999999999999987
Q ss_pred cCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 297 QYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 297 ~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+++...+++++.|++ ++++++..
T Consensus 120 p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 120 PDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred HHHHHHHHHHHHhhc--CcEEEEEE
Confidence 646789999999998 56777764
No 41
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.16 E-value=2.1e-10 Score=113.56 Aligned_cols=110 Identities=20% Similarity=0.320 Sum_probs=80.2
Q ss_pred HHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCE--EEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeE
Q 006633 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNIL--AVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDM 285 (637)
Q Consensus 208 L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~--~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDl 285 (637)
+.+.++... ..++||+|||.|+.+.+|+++|.. ++|.++..+.. ..+.|.+.++++...+.|.....++ +.||+
T Consensus 22 v~~a~~~~~--~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~-l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~ 97 (192)
T PF03848_consen 22 VLEAVPLLK--PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEK-LQRLAEEEGLDIRTRVADLNDFDFP-EEYDF 97 (192)
T ss_dssp HHHHCTTS---SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHH-HHHHHHHTT-TEEEEE-BGCCBS-T-TTEEE
T ss_pred HHHHHhhcC--CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHH-HHHHHhhcCceeEEEEecchhcccc-CCcCE
Confidence 444444333 348999999999999999999754 45554433332 3346667788898888888777775 68999
Q ss_pred EEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 286 AHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 286 V~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
|+++.+++++..+....+++.+...++|||++++..
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 999999988887677889999999999999999864
No 42
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.16 E-value=1.7e-10 Score=119.67 Aligned_cols=97 Identities=20% Similarity=0.187 Sum_probs=75.1
Q ss_pred CCEEEEECCCCchHHHHHhhc---C--CEEEEcCccccHHHHHHHHHHc----C-CCeEEEEeccccCCCCCCCeeEEEe
Q 006633 219 IRTAIDTGCGVASWGAYLMSR---N--ILAVSFAPRDTHEAQVQFALER----G-VPALIGVMASIRLPYPSRAFDMAHC 288 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~--v~~vdisp~Dls~a~i~~A~er----g-~~~~~~~~d~~~Lpfpd~sFDlV~~ 288 (637)
+.+|||+|||+|..+..+++. . ++++|+ ++.+++.|+++ + .++.+...+...+++++++||+|++
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~-----s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDM-----TPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECC-----CHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEE
Confidence 349999999999877766553 2 455544 44555555442 3 2567788888889998899999999
Q ss_pred ccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 289 SRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 289 s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+.+++++. +...++.++.|+|||||.|++++.
T Consensus 153 ~~v~~~~~--d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 153 NCVINLSP--DKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred cCcccCCC--CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 98886555 788999999999999999999864
No 43
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.16 E-value=2.2e-10 Score=115.21 Aligned_cols=96 Identities=22% Similarity=0.306 Sum_probs=74.6
Q ss_pred EEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHc----CC--CeEEEEeccccCCCCCCCeeEEEecccc
Q 006633 221 TAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIRLPYPSRAFDMAHCSRCL 292 (637)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~er----g~--~~~~~~~d~~~Lpfpd~sFDlV~~s~~L 292 (637)
+|||||||+|.++..+++. +..++++ |+++.+++.+.++ +. .+.+...|....|++ ++||+|++..++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gi---d~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l 77 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGY---TISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVI 77 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHH
Confidence 7999999999999999876 3444444 4455666555543 22 356777777666665 589999999999
Q ss_pred ccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 293 IPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 293 ~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+|+. +...+++++.++|||||++++..+
T Consensus 78 ~~~~--~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 78 HHIK--DKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HhCC--CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 8876 789999999999999999999875
No 44
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.14 E-value=1.8e-11 Score=107.27 Aligned_cols=93 Identities=23% Similarity=0.286 Sum_probs=54.4
Q ss_pred EEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCC--CCCCCeeEEEeccccccCC
Q 006633 223 IDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--YPSRAFDMAHCSRCLIPWG 296 (637)
Q Consensus 223 LDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lp--fpd~sFDlV~~s~~L~h~~ 296 (637)
||||||+|.++..++++ .++++|+++.++..+..++................... ...++||+|+++.+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 79999999999998876 46778887777644433333322223333333322221 123699999999999888
Q ss_pred cCCHHHHHHHHHhcccCCeEE
Q 006633 297 QYADGLYLIEVDRVLRPGGYW 317 (637)
Q Consensus 297 ~~d~~~~L~ei~RvLKPGG~L 317 (637)
+ +...+++++.++|||||.|
T Consensus 80 ~-~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 E-DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S--HHHHHHHHTTT-TSS-EE
T ss_pred h-hHHHHHHHHHHHcCCCCCC
Confidence 4 8999999999999999986
No 45
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.13 E-value=1.5e-10 Score=113.82 Aligned_cols=97 Identities=22% Similarity=0.289 Sum_probs=75.0
Q ss_pred EEEEECCCCchHHHHHhh-cCCEEEEcCccccHHHHHHHH-----HHcCCCeE-EEEeccccCC-CCCCCeeEEEecccc
Q 006633 221 TAIDTGCGVASWGAYLMS-RNILAVSFAPRDTHEAQVQFA-----LERGVPAL-IGVMASIRLP-YPSRAFDMAHCSRCL 292 (637)
Q Consensus 221 ~VLDIGCGtG~~a~~La~-~~v~~vdisp~Dls~a~i~~A-----~erg~~~~-~~~~d~~~Lp-fpd~sFDlV~~s~~L 292 (637)
.+|+||||||..-.++-- .+..++.++ .++.|.+++ ..+...+. |++++.+.+| ++++++|.|+|..++
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lD---pn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL 155 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLD---PNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVL 155 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeC---CcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEE
Confidence 689999999987666653 344555553 333444333 33344455 8899999999 899999999999999
Q ss_pred ccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 293 IPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 293 ~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+... ++.+.|.|+.|+|||||.+++..+
T Consensus 156 CSve--~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 156 CSVE--DPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred eccC--CHHHHHHHHHHhcCCCcEEEEEec
Confidence 7777 899999999999999999999865
No 46
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.13 E-value=3.6e-10 Score=123.38 Aligned_cols=112 Identities=26% Similarity=0.366 Sum_probs=85.1
Q ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcC--CCeEEEEeccccCCCC
Q 006633 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLPYP 279 (637)
Q Consensus 203 ~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg--~~~~~~~~d~~~Lpfp 279 (637)
..++.+.+.+.+.++. +|||||||+|.++..++++ +..++.+ |+++.+++.|+++. ..+.+...+...+
T Consensus 154 ~k~~~l~~~l~l~~g~--rVLDIGcG~G~~a~~la~~~g~~V~gi---DlS~~~l~~A~~~~~~l~v~~~~~D~~~l--- 225 (383)
T PRK11705 154 AKLDLICRKLQLKPGM--RVLDIGCGWGGLARYAAEHYGVSVVGV---TISAEQQKLAQERCAGLPVEIRLQDYRDL--- 225 (383)
T ss_pred HHHHHHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHHhccCeEEEEECchhhc---
Confidence 3445555666555544 9999999999999999876 6666666 66778888777653 3455665565444
Q ss_pred CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 280 SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 280 d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+++||.|++..+++|....+...+++++.++|||||++++...
T Consensus 226 ~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 226 NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 4789999999999888643668899999999999999999754
No 47
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.12 E-value=4.5e-10 Score=113.22 Aligned_cols=100 Identities=17% Similarity=0.060 Sum_probs=76.8
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHH-HHc----------------CCCeEEEEeccccCCCC-C
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFA-LER----------------GVPALIGVMASIRLPYP-S 280 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A-~er----------------g~~~~~~~~d~~~Lpfp-d 280 (637)
+++|||+|||.|..+.+|+++|..++++ |+++.+++.+ .+. +..+.+.++|...++.. .
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~~V~gv---D~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGHRVLGV---ELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCCeEEEE---eCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 3499999999999999999997655555 5555555543 222 23467778887776643 4
Q ss_pred CCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 281 RAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 281 ~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+.||.|+...+++|++++....++..+.++|||||++++.+
T Consensus 112 ~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 112 GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 67999999998989987667789999999999999877664
No 48
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.12 E-value=1.2e-09 Score=107.94 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=81.3
Q ss_pred CCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEeccccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~ 293 (637)
+.+|||+|||+|.++..++.+ .++++|.++.++..+.. .+.+.+. ++.+...+...++. +++||+|++...
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~-~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLRE-VAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHH-HHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 458999999999999888753 34555554433332222 2223343 47888888888776 779999998642
Q ss_pred cCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeec
Q 006633 294 PWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 360 (637)
Q Consensus 294 h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~ 360 (637)
. +.+.++.++.++|||||.+++..+.. ....++++++.++|....
T Consensus 122 --~--~~~~~l~~~~~~LkpGG~lv~~~~~~------------------~~~~l~~~~~~~~~~~~~ 166 (187)
T PRK00107 122 --A--SLSDLVELCLPLLKPGGRFLALKGRD------------------PEEEIAELPKALGGKVEE 166 (187)
T ss_pred --c--CHHHHHHHHHHhcCCCeEEEEEeCCC------------------hHHHHHHHHHhcCceEee
Confidence 2 67889999999999999999985421 123477788888886543
No 49
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.10 E-value=4.5e-10 Score=116.78 Aligned_cols=101 Identities=18% Similarity=0.258 Sum_probs=76.2
Q ss_pred CCCEEEEECCCCch----HHHHHhhc-------CCEEEEcCccccHHHHHHHHHHcC-----------------------
Q 006633 218 SIRTAIDTGCGVAS----WGAYLMSR-------NILAVSFAPRDTHEAQVQFALERG----------------------- 263 (637)
Q Consensus 218 ~~r~VLDIGCGtG~----~a~~La~~-------~v~~vdisp~Dls~a~i~~A~erg----------------------- 263 (637)
...+|||+|||+|. ++..|++. ++.++++ |+++.+++.|++.-
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~---Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~ 175 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILAT---DIDLKALEKARAGIYPERELEDLPKALLARYFSRVED 175 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEE---ECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCC
Confidence 34599999999994 55555543 2333333 66667777666431
Q ss_pred ---------CCeEEEEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 264 ---------VPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 264 ---------~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
..+.|.+.|....+++.++||+|+|..+++|+.+++...++.++.++|+|||+|++..
T Consensus 176 ~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 176 KYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred eEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 1367778888888877899999999999988875466789999999999999999964
No 50
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.09 E-value=2.3e-10 Score=116.38 Aligned_cols=136 Identities=20% Similarity=0.219 Sum_probs=94.3
Q ss_pred hhcceEeecCCeeecCCCCCCCcccHHHHHHHHHHHhcc-cCC----CCCEEEEECCCCchHHHHHhhcCCEEEEcCccc
Q 006633 176 KNQNWVRFQGDRFSFPGGGTMFPRGADAYIDDIGKLINL-KDG----SIRTAIDTGCGVASWGAYLMSRNILAVSFAPRD 250 (637)
Q Consensus 176 ~~q~W~~~~g~~~~Fpg~g~~f~~g~~~~i~~L~~lL~~-~~g----~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~D 250 (637)
....|++.+|-+..++.-+ ........+.+.+..+. .++ .+++|||+|||+|.++..|++.+..++++ |
T Consensus 45 la~~wwd~~g~~~~Lh~mn---~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlga~V~GI---D 118 (282)
T KOG1270|consen 45 LAFTWWDEEGVRHPLHSMN---QTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLGAQVTGI---D 118 (282)
T ss_pred hcccccccccchhhhhhcc---chhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhCCeeEee---c
Confidence 3457888777555544322 12223333344444422 233 25789999999999999999998877777 7
Q ss_pred cHHHHHHHHHHcC--CC---------eEEEEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEE
Q 006633 251 THEAQVQFALERG--VP---------ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWIL 319 (637)
Q Consensus 251 ls~a~i~~A~erg--~~---------~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvl 319 (637)
.++.+++.|++.. .| +.+...+.+.+ .+.||.|+|+.+++|.. |+..++..+.+.|||||.+++
T Consensus 119 ~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcsevleHV~--dp~~~l~~l~~~lkP~G~lfi 193 (282)
T KOG1270|consen 119 ASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCSEVLEHVK--DPQEFLNCLSALLKPNGRLFI 193 (282)
T ss_pred ccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeHHHHHHHh--CHHHHHHHHHHHhCCCCceEe
Confidence 7888888887542 01 12222233332 24499999999999999 899999999999999999999
Q ss_pred EeC
Q 006633 320 SGP 322 (637)
Q Consensus 320 s~p 322 (637)
++-
T Consensus 194 tti 196 (282)
T KOG1270|consen 194 TTI 196 (282)
T ss_pred eeh
Confidence 975
No 51
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.09 E-value=5.6e-10 Score=112.19 Aligned_cols=155 Identities=19% Similarity=0.246 Sum_probs=97.6
Q ss_pred cHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc----CC--CeEEEEecc
Q 006633 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV--PALIGVMAS 273 (637)
Q Consensus 200 g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er----g~--~~~~~~~d~ 273 (637)
+.+...+.+.+.++.......+|||+|||+|.++..+++.+..++++ |+++.+++.|+++ +. ++.+...+.
T Consensus 37 ~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gv---D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~ 113 (219)
T TIGR02021 37 GRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAV---DISEQMVQMARNRAQGRDVAGNVEFEVNDL 113 (219)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEE---ECCHHHHHHHHHHHHhcCCCCceEEEECCh
Confidence 34455556666665212234599999999999999999885444444 5555566555543 22 567887777
Q ss_pred ccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccc----cCCCCc---hhhhHHhHhh
Q 006633 274 IRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHW----KGWNRT---TEDLKSEQNG 346 (637)
Q Consensus 274 ~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~----~~w~~t---~e~l~~~~~~ 346 (637)
..++ ++||+|++..+++|+..++...++.++.+++++|+++.+... ..+.... ..|... ........++
T Consensus 114 ~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
T TIGR02021 114 LSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPK-TAWLAFLKMIGELFPGSSRATSAYLHPMTD 189 (219)
T ss_pred hhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCC-chHHHHHHHHHhhCcCcccccceEEecHHH
Confidence 7665 789999999999888644677899999999998877766421 1111000 001000 0111112356
Q ss_pred HHHHHHHhceeeecc
Q 006633 347 IETIARSLCWKKLIQ 361 (637)
Q Consensus 347 ie~la~~l~w~~v~~ 361 (637)
++++++..+|+.+..
T Consensus 190 ~~~~l~~~Gf~v~~~ 204 (219)
T TIGR02021 190 LERALGELGWKIVRE 204 (219)
T ss_pred HHHHHHHcCceeeee
Confidence 777888888876654
No 52
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.05 E-value=2.6e-10 Score=112.33 Aligned_cols=102 Identities=22% Similarity=0.238 Sum_probs=74.2
Q ss_pred cCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcC---CCeEEEEeccccCCCCCCCeeEEEec
Q 006633 215 KDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLPYPSRAFDMAHCS 289 (637)
Q Consensus 215 ~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg---~~~~~~~~d~~~Lpfpd~sFDlV~~s 289 (637)
.....+++||+|||.|.++..|+.+ .++++|+ ++..++.|++|. ..+.+.+.+.... .|.+.||+|+++
T Consensus 40 p~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDi-----s~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~S 113 (201)
T PF05401_consen 40 PRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDI-----SPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLS 113 (201)
T ss_dssp TTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES------HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEE
T ss_pred CccccceeEecCCCccHHHHHHHHhhCceEEEeC-----CHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEe
Confidence 3444569999999999999999998 5666655 666777777663 4578888776543 578999999999
Q ss_pred cccccCCc-CCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 290 RCLIPWGQ-YADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 290 ~~L~h~~~-~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.+++++.+ ++...++..+...|+|||.|++.+.
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 99977763 2567899999999999999999864
No 53
>PRK06922 hypothetical protein; Provisional
Probab=99.05 E-value=8.1e-10 Score=125.74 Aligned_cols=101 Identities=19% Similarity=0.135 Sum_probs=76.3
Q ss_pred CCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHc----CCCeEEEEeccccCC--CCCCCeeEEEecc
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLP--YPSRAFDMAHCSR 290 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~er----g~~~~~~~~d~~~Lp--fpd~sFDlV~~s~ 290 (637)
+.+|||+|||+|.++..|++. +..++++ |+++.+++.|+++ +.+..+..+|...+| +++++||+|+++.
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGI---DIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~ 495 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGI---DISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSS 495 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEch
Confidence 349999999999998888765 3344444 4555555555433 345677778887887 8889999999999
Q ss_pred ccccCC-----------cCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 291 CLIPWG-----------QYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 291 ~L~h~~-----------~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++++|. .++...+++++.|+|||||.+++...
T Consensus 496 vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 496 ILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 887653 12567899999999999999999854
No 54
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.04 E-value=1.2e-09 Score=108.92 Aligned_cols=102 Identities=17% Similarity=0.234 Sum_probs=72.9
Q ss_pred CCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcC-CCeEEEEecc-ccCC--CCCCCeeEEEecc
Q 006633 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG-VPALIGVMAS-IRLP--YPSRAFDMAHCSR 290 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg-~~~~~~~~d~-~~Lp--fpd~sFDlV~~s~ 290 (637)
..+|||+|||+|.++..|++. .++++|+++..+..+..+.. ..+ .++.+...++ ..++ +++++||+|+++.
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~-~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIE-EEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHH-HcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 458999999999999998875 35666665443333332222 223 3578888887 6666 7788999999976
Q ss_pred ccccCCcC-------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 291 CLIPWGQY-------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 291 ~L~h~~~~-------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.. +|... ....+++++.++|||||.|++..+
T Consensus 120 ~~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 120 PD-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred CC-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 54 44320 146799999999999999999864
No 55
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.03 E-value=2.9e-09 Score=105.93 Aligned_cols=112 Identities=20% Similarity=0.215 Sum_probs=83.4
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcC---CCeEEEEeccccCC
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLP 277 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg---~~~~~~~~d~~~Lp 277 (637)
+.+.+.+.+...+ ..+|||+|||+|.++..+++.. ..++.+ |+++.+++.+.++. ..+.+...+...++
T Consensus 27 ~~~~~~~~~~~~~--~~~vldiG~G~G~~~~~~~~~~~~~~~~~~i---D~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 101 (223)
T TIGR01934 27 WRRRAVKLIGVFK--GQKVLDVACGTGDLAIELAKSAPDRGKVTGV---DFSSEMLEVAKKKSELPLNIEFIQADAEALP 101 (223)
T ss_pred HHHHHHHHhccCC--CCeEEEeCCCCChhHHHHHHhcCCCceEEEE---ECCHHHHHHHHHHhccCCCceEEecchhcCC
Confidence 3344455544333 4599999999999999988762 234444 45556665555543 24677778888888
Q ss_pred CCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 278 YPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 278 fpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+++++||+|+++..+++.. +...+++++.++|+|||++++...
T Consensus 102 ~~~~~~D~i~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 102 FEDNSFDAVTIAFGLRNVT--DIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CCCCcEEEEEEeeeeCCcc--cHHHHHHHHHHHcCCCcEEEEEEe
Confidence 8888999999999886666 799999999999999999998754
No 56
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.02 E-value=3.2e-09 Score=106.81 Aligned_cols=111 Identities=21% Similarity=0.215 Sum_probs=81.4
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHc------CCCeEEEEecccc
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALER------GVPALIGVMASIR 275 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~er------g~~~~~~~~d~~~ 275 (637)
...+...+...+ ..+|||+|||+|.++..+++.. ..++.+ |+++.+++.+.++ ..++.+...+...
T Consensus 40 ~~~~~~~~~~~~--~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~---D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 114 (239)
T PRK00216 40 RRKTIKWLGVRP--GDKVLDLACGTGDLAIALAKAVGKTGEVVGL---DFSEGMLAVGREKLRDLGLSGNVEFVQGDAEA 114 (239)
T ss_pred HHHHHHHhCCCC--CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEE---eCCHHHHHHHHHhhcccccccCeEEEeccccc
Confidence 334444444333 3489999999999999888753 334444 4444555555443 1346777788888
Q ss_pred CCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 276 LPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 276 Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++++.++||+|+++.+++++. +...++.++.++|+|||.+++...
T Consensus 115 ~~~~~~~~D~I~~~~~l~~~~--~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 115 LPFPDNSFDAVTIAFGLRNVP--DIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred CCCCCCCccEEEEecccccCC--CHHHHHHHHHHhccCCcEEEEEEe
Confidence 888788999999999997766 789999999999999999998753
No 57
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.02 E-value=3.9e-09 Score=95.09 Aligned_cols=105 Identities=18% Similarity=0.084 Sum_probs=70.6
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHH----cC-CCeEEEEecccc
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALE----RG-VPALIGVMASIR 275 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~e----rg-~~~~~~~~d~~~ 275 (637)
...+.+.+....+ .+|||+|||+|.++..++++ .++++|+ ++.+++.+++ .+ .++.+...+...
T Consensus 8 ~~~~~~~~~~~~~--~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~-----s~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 80 (124)
T TIGR02469 8 RALTLSKLRLRPG--DVLWDIGAGSGSITIEAARLVPNGRVYAIER-----NPEALRLIERNARRFGVSNIVIVEGDAPE 80 (124)
T ss_pred HHHHHHHcCCCCC--CEEEEeCCCCCHHHHHHHHHCCCceEEEEcC-----CHHHHHHHHHHHHHhCCCceEEEeccccc
Confidence 3445555544443 39999999999999999886 2445554 4444444332 22 245666555543
Q ss_pred -CCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 276 -LPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 276 -Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
++....+||.|++..... ....+++++.++|||||+|++..
T Consensus 81 ~~~~~~~~~D~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 81 ALEDSLPEPDRVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred cChhhcCCCCEEEECCcch-----hHHHHHHHHHHHcCCCCEEEEEe
Confidence 333346899999976442 45689999999999999999974
No 58
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.01 E-value=2.9e-09 Score=111.95 Aligned_cols=122 Identities=17% Similarity=0.199 Sum_probs=76.2
Q ss_pred CCCCCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCCC--eE
Q 006633 193 GGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGVP--AL 267 (637)
Q Consensus 193 ~g~~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~~--~~ 267 (637)
.+..|+.|.........+++......+.+|||+|||+|.++..+++.+ ++++|+++..+..+..+.. .++.. ..
T Consensus 134 pg~aFgtG~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~-~n~~~~~~~ 212 (288)
T TIGR00406 134 PGLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAE-LNQVSDRLQ 212 (288)
T ss_pred CCCcccCCCCHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHH-HcCCCcceE
Confidence 344455555555555444443222234599999999999998888764 5566665543333332222 22332 22
Q ss_pred EEEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 268 IGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 268 ~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+...+ ..+..+++||+|+++.... ....++.++.++|||||+|++++.
T Consensus 213 ~~~~~--~~~~~~~~fDlVvan~~~~-----~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 213 VKLIY--LEQPIEGKADVIVANILAE-----VIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred EEecc--cccccCCCceEEEEecCHH-----HHHHHHHHHHHHcCCCcEEEEEeC
Confidence 33222 2344567899999976431 345789999999999999999975
No 59
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.01 E-value=7.3e-09 Score=100.52 Aligned_cols=119 Identities=20% Similarity=0.217 Sum_probs=76.6
Q ss_pred ccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--C--CEEEEcCccccHHHHHHHHHHcCCC-eEEEEecc
Q 006633 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--N--ILAVSFAPRDTHEAQVQFALERGVP-ALIGVMAS 273 (637)
Q Consensus 199 ~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~--v~~vdisp~Dls~a~i~~A~erg~~-~~~~~~d~ 273 (637)
.+.+.-...|.+.+.... ..+|||+|||+|.++..++++ . ++++|+++..+..+... +...+.. +.+...|.
T Consensus 14 ~~~d~~t~lL~~~l~~~~--~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n-~~~n~~~~v~~~~~d~ 90 (170)
T PF05175_consen 14 PRLDAGTRLLLDNLPKHK--GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRN-AERNGLENVEVVQSDL 90 (170)
T ss_dssp TSHHHHHHHHHHHHHHHT--TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHH-HHHTTCTTEEEEESST
T ss_pred CCCCHHHHHHHHHHhhcc--CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHH-HHhcCccccccccccc
Confidence 444555556666666543 348999999999999999987 3 55666644333322222 2233444 66766665
Q ss_pred ccCCCCCCCeeEEEeccccccCCcC----CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 274 IRLPYPSRAFDMAHCSRCLIPWGQY----ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 274 ~~Lpfpd~sFDlV~~s~~L~h~~~~----d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.. +++++.||+|+|+.-+ |...+ -...++.+..+.|||||.|++...
T Consensus 91 ~~-~~~~~~fD~Iv~NPP~-~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 91 FE-ALPDGKFDLIVSNPPF-HAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TT-TCCTTCEEEEEE---S-BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc-cccccceeEEEEccch-hcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 33 3447899999999865 32221 246789999999999999988753
No 60
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.00 E-value=2.5e-09 Score=108.28 Aligned_cols=112 Identities=16% Similarity=0.222 Sum_probs=80.2
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc----CCCeEEEEeccccCC-CC
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GVPALIGVMASIRLP-YP 279 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er----g~~~~~~~~d~~~Lp-fp 279 (637)
++.+...+... ...+|||||||+|.++..+++.+..++.+ |+++.+++.+.++ +..+.+...+....+ ..
T Consensus 37 ~~~l~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~v~~i---D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (233)
T PRK05134 37 LNYIREHAGGL--FGKRVLDVGCGGGILSESMARLGADVTGI---DASEENIEVARLHALESGLKIDYRQTTAEELAAEH 111 (233)
T ss_pred HHHHHHhccCC--CCCeEEEeCCCCCHHHHHHHHcCCeEEEE---cCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhc
Confidence 34444444322 34589999999999999998886544444 4445555544432 344566666665554 34
Q ss_pred CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCC
Q 006633 280 SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPP 323 (637)
Q Consensus 280 d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp 323 (637)
++.||+|+++.+++|.. +...++.++.++|+|||.++++.+.
T Consensus 112 ~~~fD~Ii~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 112 PGQFDVVTCMEMLEHVP--DPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred CCCccEEEEhhHhhccC--CHHHHHHHHHHHcCCCcEEEEEecC
Confidence 57899999999997777 7889999999999999999998653
No 61
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.99 E-value=2.7e-10 Score=97.39 Aligned_cols=92 Identities=23% Similarity=0.329 Sum_probs=68.0
Q ss_pred eeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhccccccC--CCC-CccceeeeccccccCCCCcC
Q 006633 482 LDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMS--TYP-RTYDLIHADSIFSLYKDRCE 558 (637)
Q Consensus 482 lD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~--~yp-~t~Dl~H~~~lfs~~~~~c~ 558 (637)
||+|||.|-++..|.+++. .+|+.+|.++.+++.+.++.--.-..-.+..+. ++| ++||+|++.++|... -+
T Consensus 1 LdiG~G~G~~~~~l~~~~~--~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~---~~ 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGG--ASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL---ED 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTT--CEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS---SH
T ss_pred CEecCcCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec---cC
Confidence 8999999999999999833 466667777788888888776332111122222 344 999999999999876 56
Q ss_pred HHHHHHHHhhcccCCcEEEE
Q 006633 559 MEDVLLEMDRILRPEGSVII 578 (637)
Q Consensus 559 ~~~~l~e~dRiLrPgG~~i~ 578 (637)
.+.+|-|+.|+|||||+++|
T Consensus 76 ~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHcCcCeEEeC
Confidence 78999999999999999986
No 62
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.99 E-value=2.8e-09 Score=112.35 Aligned_cols=123 Identities=22% Similarity=0.244 Sum_probs=84.7
Q ss_pred CCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHcCCCeEE
Q 006633 192 GGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALI 268 (637)
Q Consensus 192 g~g~~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~erg~~~~~ 268 (637)
..|..|++|.....+...+++......+.+|||+|||+|.++...++. .+.++|++|..+..+.. .+..+++...+
T Consensus 135 dPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~-N~~~N~~~~~~ 213 (295)
T PF06325_consen 135 DPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARE-NAELNGVEDRI 213 (295)
T ss_dssp STTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHH-HHHHTT-TTCE
T ss_pred CCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHH-HHHHcCCCeeE
Confidence 446678899888888888877654445569999999999988887776 47788887755544333 44455655444
Q ss_pred EEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 269 GVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 269 ~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.+.. ........||+|+++-... -...++..+.++|+|||+|++++-
T Consensus 214 ~v~~--~~~~~~~~~dlvvANI~~~-----vL~~l~~~~~~~l~~~G~lIlSGI 260 (295)
T PF06325_consen 214 EVSL--SEDLVEGKFDLVVANILAD-----VLLELAPDIASLLKPGGYLILSGI 260 (295)
T ss_dssp EESC--TSCTCCS-EEEEEEES-HH-----HHHHHHHHCHHHEEEEEEEEEEEE
T ss_pred EEEE--ecccccccCCEEEECCCHH-----HHHHHHHHHHHhhCCCCEEEEccc
Confidence 4322 2234458899999986442 344578889999999999999975
No 63
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.99 E-value=1.8e-09 Score=111.15 Aligned_cols=131 Identities=21% Similarity=0.178 Sum_probs=78.5
Q ss_pred CcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHc----CCCeEEE
Q 006633 197 FPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALER----GVPALIG 269 (637)
Q Consensus 197 f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~er----g~~~~~~ 269 (637)
|+.|.......+.+.+......+.+|||+|||+|.++..+++.+ ++++|+ ++.+++.|+++ ++...+
T Consensus 98 fgtg~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDi-----s~~~l~~A~~n~~~~~~~~~~- 171 (250)
T PRK00517 98 FGTGTHPTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDI-----DPQAVEAARENAELNGVELNV- 171 (250)
T ss_pred cCCCCCHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEEC-----CHHHHHHHHHHHHHcCCCceE-
Confidence 33444433334444443222234599999999999988887764 445555 44455444433 331111
Q ss_pred EeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHH
Q 006633 270 VMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIET 349 (637)
Q Consensus 270 ~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~ 349 (637)
.++..+.+||+|+++.... ....++.++.++|||||++++++... .....+..
T Consensus 172 -----~~~~~~~~fD~Vvani~~~-----~~~~l~~~~~~~LkpgG~lilsgi~~-----------------~~~~~v~~ 224 (250)
T PRK00517 172 -----YLPQGDLKADVIVANILAN-----PLLELAPDLARLLKPGGRLILSGILE-----------------EQADEVLE 224 (250)
T ss_pred -----EEccCCCCcCEEEEcCcHH-----HHHHHHHHHHHhcCCCcEEEEEECcH-----------------hhHHHHHH
Confidence 1122223799999975331 34578899999999999999986511 11234556
Q ss_pred HHHHhceeeec
Q 006633 350 IARSLCWKKLI 360 (637)
Q Consensus 350 la~~l~w~~v~ 360 (637)
.++..+|+.+.
T Consensus 225 ~l~~~Gf~~~~ 235 (250)
T PRK00517 225 AYEEAGFTLDE 235 (250)
T ss_pred HHHHCCCEEEE
Confidence 67777786654
No 64
>PRK06202 hypothetical protein; Provisional
Probab=98.99 E-value=3.2e-09 Score=107.77 Aligned_cols=97 Identities=18% Similarity=0.149 Sum_probs=72.2
Q ss_pred CCEEEEECCCCchHHHHHhhc----C--CEEEEcCccccHHHHHHHHHHcC--CCeEEEEeccccCCCCCCCeeEEEecc
Q 006633 219 IRTAIDTGCGVASWGAYLMSR----N--ILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLPYPSRAFDMAHCSR 290 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~--v~~vdisp~Dls~a~i~~A~erg--~~~~~~~~d~~~Lpfpd~sFDlV~~s~ 290 (637)
..+|||+|||+|.++..|++. + ..++.+ |+++.+++.|+++. .++.+...+...+++++++||+|+|+.
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gv---D~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~ 137 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAI---DPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH 137 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEE---cCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECC
Confidence 458999999999998888752 2 345555 66777887777653 235566666667777788999999999
Q ss_pred ccccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 291 CLIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 291 ~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
+++|+.+++...+++++.|++| |.+++.
T Consensus 138 ~lhh~~d~~~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 138 FLHHLDDAEVVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred eeecCChHHHHHHHHHHHHhcC--eeEEEe
Confidence 9988874234679999999998 455554
No 65
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.98 E-value=3.8e-09 Score=106.87 Aligned_cols=98 Identities=16% Similarity=0.095 Sum_probs=75.6
Q ss_pred CEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHH-HHcC----------------CCeEEEEeccccCCCC-CC
Q 006633 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFA-LERG----------------VPALIGVMASIRLPYP-SR 281 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A-~erg----------------~~~~~~~~d~~~Lpfp-d~ 281 (637)
.+|||+|||.|..+.+|+++|..++.+ |+++..++.+ .+++ ..+.+.++|...++.. ..
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~~V~av---D~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGHEVLGV---ELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCCeEEEE---ccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 489999999999999999997666666 5565655543 2333 2356677777777533 35
Q ss_pred CeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 282 AFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 282 sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
.||+|+-..+++|++++....++..+.++|||||++++.
T Consensus 116 ~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 116 DVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred CeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 899999999999998767789999999999999975553
No 66
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.98 E-value=5.5e-09 Score=111.24 Aligned_cols=150 Identities=19% Similarity=0.193 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhccc-CCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcC----------CCeEEEE
Q 006633 202 DAYIDDIGKLINLK-DGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG----------VPALIGV 270 (637)
Q Consensus 202 ~~~i~~L~~lL~~~-~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg----------~~~~~~~ 270 (637)
+..++.+.+++... ...+.+|||+|||+|.++..|++++..++.+ |+++.+++.|+++. ..+.+..
T Consensus 127 ~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gv---D~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~ 203 (315)
T PLN02585 127 AQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSAS---DISAAMVAEAERRAKEALAALPPEVLPKFEA 203 (315)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEE---ECCHHHHHHHHHHHHhcccccccccceEEEE
Confidence 44455666666532 1234599999999999999999986555444 55666666555442 2345665
Q ss_pred eccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCcccc--------ccCCCCchhhhHH
Q 006633 271 MASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESH--------WKGWNRTTEDLKS 342 (637)
Q Consensus 271 ~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~--------~~~w~~t~e~l~~ 342 (637)
.|...+ +++||+|+|..+++|++.+....++..+.+ +.+||.++ +..+..+... +.+..........
T Consensus 204 ~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI-s~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~ 278 (315)
T PLN02585 204 NDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII-SFAPKTLYYDILKRIGELFPGPSKATRAYLH 278 (315)
T ss_pred cchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE-EeCCcchHHHHHHHHHhhcCCCCcCceeeeC
Confidence 554433 578999999999989875233456666665 45666644 4333222110 0010000011111
Q ss_pred hHhhHHHHHHHhceeee
Q 006633 343 EQNGIETIARSLCWKKL 359 (637)
Q Consensus 343 ~~~~ie~la~~l~w~~v 359 (637)
..++++++.+..+|+..
T Consensus 279 s~eel~~lL~~AGf~v~ 295 (315)
T PLN02585 279 AEADVERALKKAGWKVA 295 (315)
T ss_pred CHHHHHHHHHHCCCEEE
Confidence 23557778888888754
No 67
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.97 E-value=3.6e-09 Score=110.47 Aligned_cols=112 Identities=20% Similarity=0.211 Sum_probs=86.6
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCC-EEEEcCccccHHHHHHHHHHcC-C--CeEEEEeccccCCCCC
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALERG-V--PALIGVMASIRLPYPS 280 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v-~~vdisp~Dls~a~i~~A~erg-~--~~~~~~~d~~~Lpfpd 280 (637)
.+++...++ +-.+++|||||||.|.++-.|+.+|. .+++++|....-.|.+++++-. . ...+.-...+.+|. .
T Consensus 104 W~rl~p~l~--~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~ 180 (315)
T PF08003_consen 104 WDRLLPHLP--DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-L 180 (315)
T ss_pred HHHHHhhhC--CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-c
Confidence 345555553 33466999999999999999999975 5788888777666665554332 2 23333356788887 7
Q ss_pred CCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 281 RAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 281 ~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+.||+|+|..+|.|.. ++-..|.++...|+|||.+++.+
T Consensus 181 ~~FDtVF~MGVLYHrr--~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 181 GAFDTVFSMGVLYHRR--SPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred CCcCEEEEeeehhccC--CHHHHHHHHHHhhCCCCEEEEEE
Confidence 8999999999999988 79999999999999999999874
No 68
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=3.5e-09 Score=111.02 Aligned_cols=124 Identities=23% Similarity=0.276 Sum_probs=82.4
Q ss_pred CCCCCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCCCeEEE
Q 006633 193 GGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGVPALIG 269 (637)
Q Consensus 193 ~g~~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~~~~~~ 269 (637)
.|-.|++|.........+++......+++|||+|||+|.++...++.| +.++|++|..+..++- .++.++++....
T Consensus 137 PGlAFGTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~e-Na~~N~v~~~~~ 215 (300)
T COG2264 137 PGLAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARE-NARLNGVELLVQ 215 (300)
T ss_pred cccccCCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHH-HHHHcCCchhhh
Confidence 344566666666666666665444466799999999999999988874 6677776654443333 344555553111
Q ss_pred EeccccCCCCC-CCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 270 VMASIRLPYPS-RAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 270 ~~d~~~Lpfpd-~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
......+..+. +.||+|+++-... -...+..++.+.|||||++++++-
T Consensus 216 ~~~~~~~~~~~~~~~DvIVANILA~-----vl~~La~~~~~~lkpgg~lIlSGI 264 (300)
T COG2264 216 AKGFLLLEVPENGPFDVIVANILAE-----VLVELAPDIKRLLKPGGRLILSGI 264 (300)
T ss_pred cccccchhhcccCcccEEEehhhHH-----HHHHHHHHHHHHcCCCceEEEEee
Confidence 11122233344 5899999986331 234688999999999999999974
No 69
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.95 E-value=1.3e-08 Score=100.17 Aligned_cols=95 Identities=18% Similarity=0.178 Sum_probs=67.0
Q ss_pred CCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCeeEEEeccccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~ 293 (637)
+.+|||+|||+|.++..++.. .++++|.++.++..+.. .+.+.+. ++.+..++...++ .+++||+|++.. +
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~-~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~- 118 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLRE-VKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L- 118 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHH-HHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h-
Confidence 458999999999998888754 35566554433332221 2223343 4788888887764 357899999865 3
Q ss_pred cCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 294 PWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 294 h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
. +...+++.+.++|||||.+++..
T Consensus 119 --~--~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 119 --A--SLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred --h--CHHHHHHHHHHhcCCCCEEEEEc
Confidence 2 56678899999999999999874
No 70
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.93 E-value=3e-09 Score=106.88 Aligned_cols=92 Identities=16% Similarity=0.149 Sum_probs=67.1
Q ss_pred CCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCC--------CCCCCeeE
Q 006633 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--------YPSRAFDM 285 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lp--------fpd~sFDl 285 (637)
+.+|||+|||+|.++..++++ .++++|+++ + ....++.+..+|....+ +.+++||+
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~------~-----~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~ 120 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP------M-----DPIVGVDFLQGDFRDELVLKALLERVGDSKVQV 120 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc------c-----cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCE
Confidence 348999999999999998886 256666644 1 11234677788877643 66789999
Q ss_pred EEeccccccCCcC---C-------HHHHHHHHHhcccCCeEEEEEeC
Q 006633 286 AHCSRCLIPWGQY---A-------DGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 286 V~~s~~L~h~~~~---d-------~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|+|+.+. ++... + ...+|.++.++|||||.|++...
T Consensus 121 V~S~~~~-~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 121 VMSDMAP-NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred EecCCCC-ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 9998766 44321 1 14689999999999999999753
No 71
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.92 E-value=9e-09 Score=102.91 Aligned_cols=103 Identities=16% Similarity=0.164 Sum_probs=71.2
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHH----cCC--CeEEEEec
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALE----RGV--PALIGVMA 272 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~e----rg~--~~~~~~~d 272 (637)
....+.+.+...++. +|||+|||+|..+..|++. .++++|++ +.+++.|++ .+. .+.+..+|
T Consensus 60 ~~~~~~~~l~~~~~~--~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~-----~~~~~~a~~~l~~~~~~~~v~~~~~d 132 (205)
T PRK13944 60 MVAMMCELIEPRPGM--KILEVGTGSGYQAAVCAEAIERRGKVYTVEIV-----KELAIYAAQNIERLGYWGVVEVYHGD 132 (205)
T ss_pred HHHHHHHhcCCCCCC--EEEEECcCccHHHHHHHHhcCCCCEEEEEeCC-----HHHHHHHHHHHHHcCCCCcEEEEECC
Confidence 345566666555544 9999999999999888764 24555554 444444432 333 36777777
Q ss_pred cccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 273 SIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 273 ~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
........++||+|++..++.+++ .++.++|+|||.|++..
T Consensus 133 ~~~~~~~~~~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 133 GKRGLEKHAPFDAIIVTAAASTIP--------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred cccCCccCCCccEEEEccCcchhh--------HHHHHhcCcCcEEEEEE
Confidence 766544567899999988775443 57889999999998864
No 72
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.92 E-value=4.4e-09 Score=113.23 Aligned_cols=122 Identities=16% Similarity=0.132 Sum_probs=79.4
Q ss_pred CCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEe
Q 006633 196 MFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVM 271 (637)
Q Consensus 196 ~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~ 271 (637)
++....+.-.+.+.+.++... ..+|||+|||+|.++..++++ .++++|+++..+..+..... ..+....+...
T Consensus 176 Fs~~~lD~gt~lLl~~l~~~~--~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~-~n~l~~~~~~~ 252 (342)
T PRK09489 176 FSRDGLDVGSQLLLSTLTPHT--KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLA-ANGLEGEVFAS 252 (342)
T ss_pred CCCCCCCHHHHHHHHhccccC--CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCEEEEc
Confidence 333444444455566555332 237999999999999999886 34555555444433332222 33455555555
Q ss_pred ccccCCCCCCCeeEEEeccccccCCcC---CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 272 ASIRLPYPSRAFDMAHCSRCLIPWGQY---ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 272 d~~~Lpfpd~sFDlV~~s~~L~h~~~~---d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|... ..++.||+|+|+..+|..... ..+.++.++.+.|||||.|+++.+
T Consensus 253 D~~~--~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 253 NVFS--DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred cccc--ccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 5433 235789999999988543211 357899999999999999999875
No 73
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.92 E-value=1.7e-08 Score=99.12 Aligned_cols=131 Identities=13% Similarity=-0.001 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRL 276 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~L 276 (637)
+.....+.+.+....+ .+|||+|||+|.++..++++ .++++|+++..+..++.+.. ..+. .+.+...+.. .
T Consensus 17 ~~~r~~~~~~l~~~~~--~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~-~~~~~~i~~~~~d~~-~ 92 (187)
T PRK08287 17 EEVRALALSKLELHRA--KHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQ-RFGCGNIDIIPGEAP-I 92 (187)
T ss_pred HHHHHHHHHhcCCCCC--CEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-HhCCCCeEEEecCch-h
Confidence 3333444455554443 48999999999999998875 35566665433332222221 2222 4566655542 3
Q ss_pred CCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhce
Q 006633 277 PYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCW 356 (637)
Q Consensus 277 pfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w 356 (637)
++ .++||+|++..... ....++.++.++|+|||++++..... ....++..+.++.+|
T Consensus 93 ~~-~~~~D~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~lv~~~~~~-----------------~~~~~~~~~l~~~g~ 149 (187)
T PRK08287 93 EL-PGKADAIFIGGSGG-----NLTAIIDWSLAHLHPGGRLVLTFILL-----------------ENLHSALAHLEKCGV 149 (187)
T ss_pred hc-CcCCCEEEECCCcc-----CHHHHHHHHHHhcCCCeEEEEEEecH-----------------hhHHHHHHHHHHCCC
Confidence 33 35799999976542 45668999999999999999874311 112345567777777
Q ss_pred eee
Q 006633 357 KKL 359 (637)
Q Consensus 357 ~~v 359 (637)
+.+
T Consensus 150 ~~~ 152 (187)
T PRK08287 150 SEL 152 (187)
T ss_pred Ccc
Confidence 544
No 74
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.92 E-value=4.3e-09 Score=104.31 Aligned_cols=101 Identities=17% Similarity=0.243 Sum_probs=71.3
Q ss_pred CEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcC-CCeEEEEeccccCC---CCCCCeeEEEeccc
Q 006633 220 RTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG-VPALIGVMASIRLP---YPSRAFDMAHCSRC 291 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg-~~~~~~~~d~~~Lp---fpd~sFDlV~~s~~ 291 (637)
.++||||||+|.++..++++ .++++|+++..+..+..+.. +.+ .++.+..+|+..++ +++++||.|+++..
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~-~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKAN-KLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHH-HhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 48999999999999999886 45666654433333222222 223 36788888876654 56679999998765
Q ss_pred cccCCcCC-------HHHHHHHHHhcccCCeEEEEEeC
Q 006633 292 LIPWGQYA-------DGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 292 L~h~~~~d-------~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
. +|.... ...++.++.|+|||||.|++...
T Consensus 97 d-pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 97 D-PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred C-cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 4 665311 15789999999999999999853
No 75
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=5.7e-09 Score=109.03 Aligned_cols=123 Identities=18% Similarity=0.209 Sum_probs=79.8
Q ss_pred CCCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCCCeEEEE
Q 006633 195 TMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGV 270 (637)
Q Consensus 195 ~~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~ 270 (637)
-+.....|.-.+.|.+-++...+. +|||+|||.|.++..|++. .++.+|++...+..++...+ .+++......
T Consensus 137 VFS~~~lD~GS~lLl~~l~~~~~~--~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~-~N~~~~~~v~ 213 (300)
T COG2813 137 VFSRDKLDKGSRLLLETLPPDLGG--KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLA-ANGVENTEVW 213 (300)
T ss_pred CCcCCCcChHHHHHHHhCCccCCC--cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHH-HcCCCccEEE
Confidence 334444555566677777655443 8999999999999999987 35555554333332222222 2333331223
Q ss_pred eccccCCCCCCCeeEEEeccccccCCcCCHH----HHHHHHHhcccCCeEEEEEeC
Q 006633 271 MASIRLPYPSRAFDMAHCSRCLIPWGQYADG----LYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 271 ~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~----~~L~ei~RvLKPGG~Lvls~p 322 (637)
.+....+.++ +||+|+|+.-||.-.. -.. +++.+..+.|++||.|+++..
T Consensus 214 ~s~~~~~v~~-kfd~IisNPPfh~G~~-v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 214 ASNLYEPVEG-KFDLIISNPPFHAGKA-VVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred Eecccccccc-cccEEEeCCCccCCcc-hhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 3334445555 8999999997743332 233 789999999999999999964
No 76
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.91 E-value=9.2e-09 Score=102.31 Aligned_cols=118 Identities=18% Similarity=0.214 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEec-cccCCCCC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMA-SIRLPYPS 280 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d-~~~Lpfpd 280 (637)
.+..++-.+++.+.+...+-|||||||+|..+..|.+.+...+++ |++..|++.|.++-+...+...| .+-+||+.
T Consensus 34 ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGv---DiSpsML~~a~~~e~egdlil~DMG~Glpfrp 110 (270)
T KOG1541|consen 34 AEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGV---DISPSMLEQAVERELEGDLILCDMGEGLPFRP 110 (270)
T ss_pred HHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEee---cCCHHHHHHHHHhhhhcCeeeeecCCCCCCCC
Confidence 344556667777666566799999999999999999888666666 77777887777665443343334 37899999
Q ss_pred CCeeEEEeccccccCCcC------C----HHHHHHHHHhcccCCeEEEEEeCC
Q 006633 281 RAFDMAHCSRCLIPWGQY------A----DGLYLIEVDRVLRPGGYWILSGPP 323 (637)
Q Consensus 281 ~sFDlV~~s~~L~h~~~~------d----~~~~L~ei~RvLKPGG~Lvls~pp 323 (637)
++||.|++..++ +|.-. + ...++..++.+|++|+..++.-.|
T Consensus 111 GtFDg~ISISAv-QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 111 GTFDGVISISAV-QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred CccceEEEeeee-eeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 999999997776 55321 2 234688899999999999998543
No 77
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.90 E-value=1.4e-08 Score=100.39 Aligned_cols=87 Identities=24% Similarity=0.267 Sum_probs=66.0
Q ss_pred CEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcCCCeEEEEecccc-C-CCCCCCeeEEEeccccccCC
Q 006633 220 RTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-L-PYPSRAFDMAHCSRCLIPWG 296 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~-L-pfpd~sFDlV~~s~~L~h~~ 296 (637)
.+|||+|||+|.++..+++. +..++++ |+++.+++.+.++++ .+...+... + ++++++||+|+++.+++|+.
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~~~~~~gi---D~s~~~i~~a~~~~~--~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~ 89 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEKQVRGYGI---EIDQDGVLACVARGV--NVIQGDLDEGLEAFPDKSFDYVILSQTLQATR 89 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhccCCcEEEE---eCCHHHHHHHHHcCC--eEEEEEhhhcccccCCCCcCEEEEhhHhHcCc
Confidence 38999999999999988765 4444444 556677777766654 455556544 4 47788999999999997776
Q ss_pred cCCHHHHHHHHHhcccC
Q 006633 297 QYADGLYLIEVDRVLRP 313 (637)
Q Consensus 297 ~~d~~~~L~ei~RvLKP 313 (637)
++..+++++.|++++
T Consensus 90 --d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 90 --NPEEILDEMLRVGRH 104 (194)
T ss_pred --CHHHHHHHHHHhCCe
Confidence 799999999887664
No 78
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.89 E-value=3.3e-08 Score=99.15 Aligned_cols=99 Identities=18% Similarity=0.260 Sum_probs=74.9
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHH----cCC-CeEEEEeccccCCCC-CCCeeEEEecccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE----RGV-PALIGVMASIRLPYP-SRAFDMAHCSRCL 292 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~e----rg~-~~~~~~~d~~~Lpfp-d~sFDlV~~s~~L 292 (637)
..+|||+|||+|.++..+++.+..++.+ |.++.++..+++ .+. ++.+...+...++.. .++||+|++..++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~i---D~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGANVTGI---DASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEE---eCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 4589999999999999888775444444 444445444433 233 467777776666544 4789999999999
Q ss_pred ccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 293 IPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 293 ~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+|.. +...++.++.++|+|||.++++.+
T Consensus 123 ~~~~--~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 123 EHVP--DPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred HhCC--CHHHHHHHHHHhcCCCcEEEEEec
Confidence 7776 799999999999999999999865
No 79
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.89 E-value=1.5e-08 Score=98.83 Aligned_cols=98 Identities=16% Similarity=0.159 Sum_probs=69.3
Q ss_pred CEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHH----cCCCeEEEEeccccCCCCCCCeeEEEeccccccC
Q 006633 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE----RGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPW 295 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~e----rg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~ 295 (637)
.+|||+|||+|.++..+++++..++.+ |+++.+++.+++ .+..+.+...|....+ .++||+|+++..+++.
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGKCILTT---DINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPL 95 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCCEEEEE---ECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCC
Confidence 489999999999999999885433333 444455444433 3455666666655433 4589999999877655
Q ss_pred CcC-------------------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 296 GQY-------------------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 296 ~~~-------------------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
... ....++.++.|+|||||.+++..+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 421 035689999999999999999864
No 80
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.88 E-value=1.2e-08 Score=110.81 Aligned_cols=100 Identities=21% Similarity=0.246 Sum_probs=75.5
Q ss_pred CCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcC-CCeEEEEeccccC--CCCCCCeeEEEeccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG-VPALIGVMASIRL--PYPSRAFDMAHCSRC 291 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg-~~~~~~~~d~~~L--pfpd~sFDlV~~s~~ 291 (637)
...+||||||+|.++..++.+ .++++++.+..+..+..+. .+.+ .++.+..+|+..+ .+++++||.|++++.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka-~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQI-ELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHH-HHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 348999999999999999986 5667777655554444333 3344 3677888887654 578999999998765
Q ss_pred cccCCcCCH------HHHHHHHHhcccCCeEEEEEe
Q 006633 292 LIPWGQYAD------GLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 292 L~h~~~~d~------~~~L~ei~RvLKPGG~Lvls~ 321 (637)
. +|+. .. ..++.++.|+|+|||.+.+.+
T Consensus 202 d-PW~K-krHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 202 V-PWDK-KPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred C-Cccc-cchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 4 7764 22 579999999999999999975
No 81
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.86 E-value=1.9e-08 Score=109.40 Aligned_cols=115 Identities=13% Similarity=0.099 Sum_probs=75.8
Q ss_pred ccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHc----CC----Ce
Q 006633 199 RGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER----GV----PA 266 (637)
Q Consensus 199 ~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~er----g~----~~ 266 (637)
.+.|.-.+.+.+.++...+ .+|||+|||+|.++..++++ .++++|++ +.+++.|+++ +. .+
T Consensus 211 ~~LD~GtrllL~~lp~~~~--~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S-----~~Av~~A~~N~~~n~~~~~~~v 283 (378)
T PRK15001 211 TGLDIGARFFMQHLPENLE--GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDES-----PMAVASSRLNVETNMPEALDRC 283 (378)
T ss_pred CCcChHHHHHHHhCCcccC--CeEEEEeccccHHHHHHHHhCCCCEEEEEECC-----HHHHHHHHHHHHHcCcccCceE
Confidence 3344444556666664332 48999999999999999886 35555554 4444444432 22 34
Q ss_pred EEEEeccccCCCCCCCeeEEEeccccccCC---cCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 267 LIGVMASIRLPYPSRAFDMAHCSRCLIPWG---QYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 267 ~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~---~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
.+...|... .+++.+||+|+|+..++.-. .+...+++.++.++|||||.|+++.
T Consensus 284 ~~~~~D~l~-~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 284 EFMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred EEEEccccc-cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 555555432 23456899999998774321 1124578999999999999999995
No 82
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.86 E-value=1.6e-08 Score=101.83 Aligned_cols=104 Identities=13% Similarity=0.124 Sum_probs=72.1
Q ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHc----CC-CeEEEEec
Q 006633 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMA 272 (637)
Q Consensus 203 ~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~er----g~-~~~~~~~d 272 (637)
.....+.+.+...++. +|||||||+|.++..|++. .++++++ ++.+++.++++ +. ++.+..+|
T Consensus 63 ~~~~~~~~~l~~~~g~--~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~-----~~~~~~~a~~~l~~~g~~~v~~~~gd 135 (212)
T PRK13942 63 HMVAIMCELLDLKEGM--KVLEIGTGSGYHAAVVAEIVGKSGKVVTIER-----IPELAEKAKKTLKKLGYDNVEVIVGD 135 (212)
T ss_pred HHHHHHHHHcCCCCcC--EEEEECCcccHHHHHHHHhcCCCCEEEEEeC-----CHHHHHHHHHHHHHcCCCCeEEEECC
Confidence 3445566666665554 9999999999999888765 2455555 44444444432 33 57888888
Q ss_pred cccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 273 SIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 273 ~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
....+.+.+.||+|++.....+. ...+.+.|||||.|++..
T Consensus 136 ~~~~~~~~~~fD~I~~~~~~~~~--------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 136 GTLGYEENAPYDRIYVTAAGPDI--------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cccCCCcCCCcCEEEECCCcccc--------hHHHHHhhCCCcEEEEEE
Confidence 76665667889999998765332 246777999999999863
No 83
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.86 E-value=1.6e-08 Score=101.66 Aligned_cols=111 Identities=24% Similarity=0.249 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhccc-CCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc----CC--CeEEEEeccc
Q 006633 202 DAYIDDIGKLINLK-DGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASI 274 (637)
Q Consensus 202 ~~~i~~L~~lL~~~-~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er----g~--~~~~~~~d~~ 274 (637)
....+.+.++++.. .....+|||||||+|.++..|++.+..++.+ |+++.+++.|+++ +. .+.+...+
T Consensus 46 ~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~---D~s~~~i~~a~~~~~~~~~~~~i~~~~~d-- 120 (230)
T PRK07580 46 QRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVAS---DISPQMVEEARERAPEAGLAGNITFEVGD-- 120 (230)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEE---ECCHHHHHHHHHHHHhcCCccCcEEEEcC--
Confidence 34445555555431 1224589999999999999999886444444 5555555555443 22 45666655
Q ss_pred cCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEE
Q 006633 275 RLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWI 318 (637)
Q Consensus 275 ~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lv 318 (637)
++..+++||+|++..+++|+..++...++.++.+.+++++.+.
T Consensus 121 -~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 121 -LESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred -chhccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 4455688999999999988875466788899998876555443
No 84
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.84 E-value=2.5e-08 Score=100.30 Aligned_cols=107 Identities=16% Similarity=0.190 Sum_probs=71.3
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--C---CEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCC
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--N---ILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP 277 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~---v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lp 277 (637)
....+.+.+...++. +|||||||+|.++..|++. . ++++++++..+..+... ..+.+. ++.+...|.....
T Consensus 65 ~~~~~~~~l~~~~~~--~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~-~~~~g~~~v~~~~~d~~~~~ 141 (215)
T TIGR00080 65 MVAMMTELLELKPGM--KVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERR-LRKLGLDNVIVIVGDGTQGW 141 (215)
T ss_pred HHHHHHHHhCCCCcC--EEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH-HHHCCCCCeEEEECCcccCC
Confidence 345566666665544 9999999999999998876 2 55666654333322222 222333 5777777776554
Q ss_pred CCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 278 YPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 278 fpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
.....||+|++.....+. ...+.+.|+|||+|++..
T Consensus 142 ~~~~~fD~Ii~~~~~~~~--------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 142 EPLAPYDRIYVTAAGPKI--------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred cccCCCCEEEEcCCcccc--------cHHHHHhcCcCcEEEEEE
Confidence 445689999987654332 356889999999999864
No 85
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.84 E-value=2.2e-08 Score=105.90 Aligned_cols=109 Identities=16% Similarity=0.224 Sum_probs=76.9
Q ss_pred HHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHH----HcCC--CeEEEEeccccCC
Q 006633 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFAL----ERGV--PALIGVMASIRLP 277 (637)
Q Consensus 206 ~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~----erg~--~~~~~~~d~~~Lp 277 (637)
+.+.+.+...+ ..+|||||||+|.++..++++ +..++.+ |. +.+++.++ +.+. .+.+...|....+
T Consensus 139 ~~l~~~~~~~~--~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~---D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~ 212 (306)
T TIGR02716 139 QLLLEEAKLDG--VKKMIDVGGGIGDISAAMLKHFPELDSTIL---NL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES 212 (306)
T ss_pred HHHHHHcCCCC--CCEEEEeCCchhHHHHHHHHHCCCCEEEEE---ec-HHHHHHHHHHHHhCCccceEEEEecCccCCC
Confidence 34445544443 349999999999999999887 3444444 32 23333333 3343 3677777876666
Q ss_pred CCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 278 YPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 278 fpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++. +|+|+++.++|+|.++....+++++.++|||||.+++...
T Consensus 213 ~~~--~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 213 YPE--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred CCC--CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 654 6999999999888753346899999999999999999864
No 86
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.82 E-value=7.5e-08 Score=98.03 Aligned_cols=112 Identities=18% Similarity=0.272 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHH----HcCC-CeEEEEe
Q 006633 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFAL----ERGV-PALIGVM 271 (637)
Q Consensus 201 ~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~----erg~-~~~~~~~ 271 (637)
...+++.+.+.+.. ...+|||+|||+|.++..+++. .++++|++ +.+++.+. ..+. ++.+...
T Consensus 73 ~~~l~~~~l~~~~~---~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~-----~~~~~~a~~~~~~~~~~~~~~~~~ 144 (251)
T TIGR03534 73 TEELVEAALERLKK---GPLRVLDLGTGSGAIALALAKERPDARVTAVDIS-----PEALAVARKNAARLGLDNVTFLQS 144 (251)
T ss_pred hHHHHHHHHHhccc---CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECC-----HHHHHHHHHHHHHcCCCeEEEEEC
Confidence 44555556555532 2348999999999999999886 34555554 44444443 2343 3677777
Q ss_pred ccccCCCCCCCeeEEEecccccc------CCcC------------------CHHHHHHHHHhcccCCeEEEEEe
Q 006633 272 ASIRLPYPSRAFDMAHCSRCLIP------WGQY------------------ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 272 d~~~Lpfpd~sFDlV~~s~~L~h------~~~~------------------d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+... ++++++||+|+++.-+.. +..+ ....++.++.++|+|||.+++..
T Consensus 145 d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 145 DWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred chhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 7654 466789999999754422 1110 12367899999999999999974
No 87
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.81 E-value=4.6e-09 Score=104.93 Aligned_cols=135 Identities=20% Similarity=0.257 Sum_probs=95.1
Q ss_pred CCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCCCeEEEEecccc-CC-CCCCCeeEEEeccc
Q 006633 216 DGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-LP-YPSRAFDMAHCSRC 291 (637)
Q Consensus 216 ~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~-Lp-fpd~sFDlV~~s~~ 291 (637)
.+.-+++||+|||||.++..|..+ ..+++ |+|++|+..|.+++..-.+.+++... ++ .....||+|.+..+
T Consensus 123 ~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGv-----DiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV 197 (287)
T COG4976 123 LGPFRRMLDLGCGTGLTGEALRDMADRLTGV-----DISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV 197 (287)
T ss_pred CCccceeeecccCcCcccHhHHHHHhhccCC-----chhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhH
Confidence 334679999999999999999877 44444 77999999999998765555555442 22 45678999999999
Q ss_pred cccCCcCCHHHHHHHHHhcccCCeEEEEEeC--CCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeecc
Q 006633 292 LIPWGQYADGLYLIEVDRVLRPGGYWILSGP--PVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQ 361 (637)
Q Consensus 292 L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p--p~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~~ 361 (637)
+.++. +.+.++.-+...|+|||.|.|+.- +..|.... .....+-.....+.......+++.+..
T Consensus 198 l~YlG--~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l----~ps~RyAH~~~YVr~~l~~~Gl~~i~~ 263 (287)
T COG4976 198 LPYLG--ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVL----GPSQRYAHSESYVRALLAASGLEVIAI 263 (287)
T ss_pred HHhhc--chhhHHHHHHHhcCCCceEEEEecccCCCCCeec----chhhhhccchHHHHHHHHhcCceEEEe
Confidence 97666 799999999999999999999953 12221111 111111222334666777777776653
No 88
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.80 E-value=9.4e-09 Score=103.64 Aligned_cols=93 Identities=19% Similarity=0.237 Sum_probs=68.6
Q ss_pred CEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCCCeEE----EEeccccCCCC--CCCeeEEEeccc
Q 006633 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALI----GVMASIRLPYP--SRAFDMAHCSRC 291 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~~~~~----~~~d~~~Lpfp--d~sFDlV~~s~~ 291 (637)
+.++|+|||+|..+..+++. .|+++ |++++|++.|.+....... ...+....++. ++|.|||+|..|
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIat-----D~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIAT-----DVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheee-----cCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 48999999999777777776 56666 5578899888765322111 11122223444 899999999999
Q ss_pred cccCCcCCHHHHHHHHHhcccCCe-EEEEE
Q 006633 292 LIPWGQYADGLYLIEVDRVLRPGG-YWILS 320 (637)
Q Consensus 292 L~h~~~~d~~~~L~ei~RvLKPGG-~Lvls 320 (637)
+ ||. |.+.+++++.|+||+.| .+++-
T Consensus 110 ~-HWF--dle~fy~~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 110 V-HWF--DLERFYKEAYRVLRKDGGLIAVW 136 (261)
T ss_pred H-Hhh--chHHHHHHHHHHcCCCCCEEEEE
Confidence 9 999 89999999999999877 55554
No 89
>PRK14967 putative methyltransferase; Provisional
Probab=98.80 E-value=6.7e-08 Score=97.75 Aligned_cols=101 Identities=21% Similarity=0.208 Sum_probs=66.2
Q ss_pred CEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCC
Q 006633 220 RTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~ 296 (637)
.+|||+|||+|.++..+++.+ ++++|+++..+..+.. .+...+..+.+...|... .+++++||+|+++.-+.+-.
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~-n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~ 115 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARL-NALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPAP 115 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHH-HHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCCC
Confidence 489999999999999988764 4555554433322221 222234556666666544 34677899999986442221
Q ss_pred cC-------------------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 297 QY-------------------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 297 ~~-------------------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.. ....++.++.++|||||.+++...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 116 PDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred cccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 10 134578889999999999998754
No 90
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.79 E-value=4.9e-08 Score=104.58 Aligned_cols=114 Identities=15% Similarity=0.188 Sum_probs=75.9
Q ss_pred HHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCC--EEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCCCCCCC
Q 006633 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI--LAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRA 282 (637)
Q Consensus 206 ~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v--~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lpfpd~s 282 (637)
..+.++....++. +|||+|||+|.++..++..+. .++|+++.++..+..+.. ..+. .+.+...|...+|+++++
T Consensus 172 ~~~~~l~~~~~g~--~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~-~~g~~~i~~~~~D~~~l~~~~~~ 248 (329)
T TIGR01177 172 RAMVNLARVTEGD--RVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLE-HYGIEDFFVKRGDATKLPLSSES 248 (329)
T ss_pred HHHHHHhCCCCcC--EEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHH-HhCCCCCeEEecchhcCCcccCC
Confidence 3444454444444 899999999999887776654 445554433333222221 2233 357778899999988899
Q ss_pred eeEEEecccccc---CCc----CCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 283 FDMAHCSRCLIP---WGQ----YADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 283 FDlV~~s~~L~h---~~~----~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
||+|+++.-+.. ... +....++.++.|+|||||++++..|
T Consensus 249 ~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 249 VDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred CCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 999999743211 010 0246899999999999999999876
No 91
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.79 E-value=6.1e-08 Score=95.91 Aligned_cols=152 Identities=16% Similarity=0.231 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhhhcC-CCeEEEEeccCCCCcchhHHHH----hhcc--cchhh
Q 006633 456 ALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVD-DPLWVMNTVPVEAKINTLGVIY----ERGL--IGTYQ 528 (637)
Q Consensus 456 ~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~-~~v~~mnv~~~~~~~~~l~~~~----eRgl--~~~~~ 528 (637)
+.|++++-.-..+...+.. ..+|||+|||+|.++.+|+. .+- ..|+.+|.++.++..+. +.|+ +-.++
T Consensus 27 ~~~~~~~~d~l~l~~~l~~---g~~VLDiGcGtG~~al~la~~~~~--~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~ 101 (187)
T PRK00107 27 ELWERHILDSLAIAPYLPG---GERVLDVGSGAGFPGIPLAIARPE--LKVTLVDSLGKKIAFLREVAAELGLKNVTVVH 101 (187)
T ss_pred HHHHHHHHHHHHHHhhcCC---CCeEEEEcCCCCHHHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEe
Confidence 4899887543333343444 46899999999998887764 221 35677777767776554 3444 33344
Q ss_pred ccccccCCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCceeE--EeccCC
Q 006633 529 NWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGR--IADHEN 606 (637)
Q Consensus 529 ~wce~~~~yp~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~--~~~~e~ 606 (637)
.-.+.+.. ..+||+|-++. -.+++.++-++.|+|||||.+++-+.......+.++++.+-|.+. +.-+-.
T Consensus 102 ~d~~~~~~-~~~fDlV~~~~-------~~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (187)
T PRK00107 102 GRAEEFGQ-EEKFDVVTSRA-------VASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLP 173 (187)
T ss_pred ccHhhCCC-CCCccEEEEcc-------ccCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecC
Confidence 33333433 57999999854 245789999999999999999999888888999999999999865 222223
Q ss_pred CCCCcceEEEEEec
Q 006633 607 GPRQREKILFANKK 620 (637)
Q Consensus 607 ~~~~~~~~l~~~K~ 620 (637)
|-.++-.+.|.+|+
T Consensus 174 ~~~~~~~~~~~~~~ 187 (187)
T PRK00107 174 GLDGERHLVIIRKK 187 (187)
T ss_pred CCCCcEEEEEEecC
Confidence 43345567777774
No 92
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.79 E-value=6.4e-08 Score=98.36 Aligned_cols=101 Identities=16% Similarity=0.096 Sum_probs=81.7
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHH-----------------cCCCeEEEEeccccCCCC--
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE-----------------RGVPALIGVMASIRLPYP-- 279 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~e-----------------rg~~~~~~~~d~~~Lpfp-- 279 (637)
+.+||+.|||.|.-+.+|+++|..++++ |+++..++.+.+ ++..+.+.++|...++..
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~~V~Gv---DlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGVKVIGI---ELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCCcEEEE---ecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 3599999999999999999997666666 666666655433 245678888998888642
Q ss_pred -CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 280 -SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 280 -d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.+.||+|+-..+|++++++...++.+.+.++|+|||.+++...
T Consensus 121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 2689999999999999986788999999999999999998754
No 93
>PRK04266 fibrillarin; Provisional
Probab=98.78 E-value=9.2e-08 Score=97.39 Aligned_cols=133 Identities=16% Similarity=0.111 Sum_probs=79.8
Q ss_pred HhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEecccc----CCCCCCC
Q 006633 211 LINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR----LPYPSRA 282 (637)
Q Consensus 211 lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~----Lpfpd~s 282 (637)
.++..++. +|||+|||+|.++..|++. .|.++|+++.++... .+.+.++ .++.+..+|... .+++ .+
T Consensus 67 ~l~i~~g~--~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l-~~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~ 141 (226)
T PRK04266 67 NFPIKKGS--KVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMREL-LEVAEER-KNIIPILADARKPERYAHVV-EK 141 (226)
T ss_pred hCCCCCCC--EEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHH-HHHhhhc-CCcEEEECCCCCcchhhhcc-cc
Confidence 45666655 9999999999999999886 266666655433322 2234333 355666666543 1223 56
Q ss_pred eeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeec
Q 006633 283 FDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 360 (637)
Q Consensus 283 FDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~ 360 (637)
||+|++... .+. ....++.++.|+|||||.++++.+ |. .-+|..... ...++..+..+..+++.+.
T Consensus 142 ~D~i~~d~~---~p~-~~~~~L~~~~r~LKpGG~lvI~v~---~~--~~d~~~~~~---~~~~~~~~~l~~aGF~~i~ 207 (226)
T PRK04266 142 VDVIYQDVA---QPN-QAEIAIDNAEFFLKDGGYLLLAIK---AR--SIDVTKDPK---EIFKEEIRKLEEGGFEILE 207 (226)
T ss_pred CCEEEECCC---Chh-HHHHHHHHHHHhcCCCcEEEEEEe---cc--cccCcCCHH---HHHHHHHHHHHHcCCeEEE
Confidence 999996432 111 234568999999999999999754 21 112222222 1123333566666776554
No 94
>PLN03075 nicotianamine synthase; Provisional
Probab=98.76 E-value=3.8e-08 Score=103.46 Aligned_cols=103 Identities=9% Similarity=0.158 Sum_probs=71.0
Q ss_pred CCCEEEEECCCCchHHHHHhh--c--C--CEEEEcCccccHHHHHHHHHHcC--CCeEEEEeccccCCCCCCCeeEEEec
Q 006633 218 SIRTAIDTGCGVASWGAYLMS--R--N--ILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLPYPSRAFDMAHCS 289 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~--~--~--v~~vdisp~Dls~a~i~~A~erg--~~~~~~~~d~~~Lpfpd~sFDlV~~s 289 (637)
..++|+|||||.|.++..++. . + ++++|+++..+..+...+....+ ..+.|..+|....+-..+.||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 346999999998855444332 2 3 45555544333322222211122 24788888877654345789999999
Q ss_pred cccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 290 RCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 290 ~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
++++|..++...+++.+.+.|+|||+|++..
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 8889964489999999999999999999985
No 95
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.76 E-value=2.3e-08 Score=89.78 Aligned_cols=100 Identities=23% Similarity=0.362 Sum_probs=71.8
Q ss_pred CEEEEECCCCchHHHHHhhcC-CEEEEcCccccHHHHHHHHHHc----C--CCeEEEEeccccCC--CCCCCeeEEEecc
Q 006633 220 RTAIDTGCGVASWGAYLMSRN-ILAVSFAPRDTHEAQVQFALER----G--VPALIGVMASIRLP--YPSRAFDMAHCSR 290 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~-v~~vdisp~Dls~a~i~~A~er----g--~~~~~~~~d~~~Lp--fpd~sFDlV~~s~ 290 (637)
.+|||+|||+|.++..+++.+ ..++.+ |+++..++.++.+ + .++.+...|..... +++++||+|+++.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gv---di~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~np 78 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGV---DIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNP 78 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEE---ESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEE---EECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECC
Confidence 489999999999999998876 544444 5555555555533 2 25788888887765 7889999999988
Q ss_pred ccccCCcC------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 291 CLIPWGQY------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 291 ~L~h~~~~------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
-+...... ....+++++.++|||||.+++..|
T Consensus 79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 79 PYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 66433210 235789999999999999999764
No 96
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.75 E-value=5.6e-08 Score=102.95 Aligned_cols=101 Identities=12% Similarity=0.071 Sum_probs=69.0
Q ss_pred CCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHc------CCCeEEEEecccc-CCCCCC----Cee
Q 006633 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER------GVPALIGVMASIR-LPYPSR----AFD 284 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~er------g~~~~~~~~d~~~-Lpfpd~----sFD 284 (637)
+.+|||+|||+|..+..|+++ +..++.+ |+++.+++.+.++ ++++....+|... ++++.. ...
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~i---DiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPI---DISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEE---ECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeE
Confidence 348999999999999999876 3444444 5566665555433 2345566777654 344432 334
Q ss_pred EEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 285 MAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 285 lV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++++...+.++..++...+|+++.++|+|||.|++...
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 55555667666654677899999999999999999753
No 97
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.75 E-value=6.2e-08 Score=97.78 Aligned_cols=120 Identities=16% Similarity=0.220 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcC------CCeEEEEe
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG------VPALIGVM 271 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg------~~~~~~~~ 271 (637)
.-+.+..-++++....+..+||+||||.|....-+++- ++.++.. |.++.+++...++. ..+.+..+
T Consensus 55 ~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~ac---Dfsp~Ai~~vk~~~~~~e~~~~afv~Dl 131 (264)
T KOG2361|consen 55 NWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYAC---DFSPRAIELVKKSSGYDESRVEAFVWDL 131 (264)
T ss_pred HHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEc---CCChHHHHHHHhccccchhhhcccceec
Confidence 44455666676655544448999999999888877765 2444433 44555555554332 12333333
Q ss_pred cccc--CCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCC
Q 006633 272 ASIR--LPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPV 324 (637)
Q Consensus 272 d~~~--Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~ 324 (637)
+... -|.+.+++|+|++.++|.-++++....++.++.++|||||.+++.+...
T Consensus 132 t~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 132 TSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred cchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence 3333 3567899999999999988888788899999999999999999986544
No 98
>PRK14968 putative methyltransferase; Provisional
Probab=98.73 E-value=2.4e-07 Score=89.89 Aligned_cols=100 Identities=19% Similarity=0.221 Sum_probs=66.5
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHH----cCCC---eEEEEeccccCCCCCCCeeEEEeccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE----RGVP---ALIGVMASIRLPYPSRAFDMAHCSRC 291 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~e----rg~~---~~~~~~d~~~Lpfpd~sFDlV~~s~~ 291 (637)
+.+|||+|||+|.++..+++++..++.+ |+++.+++.+++ .+.. +.+...|... ++++++||+|+++..
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~~~v~~~---D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p 99 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNGKKVVGV---DINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPP 99 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhcceEEEE---ECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCC
Confidence 3489999999999999998874433333 444444444432 2222 5666666543 455668999999765
Q ss_pred cccCCc-------------------CCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 292 LIPWGQ-------------------YADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 292 L~h~~~-------------------~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+.+..+ .....+++++.++|||||.+++..+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 533110 0135689999999999999998764
No 99
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.70 E-value=1.1e-07 Score=95.19 Aligned_cols=104 Identities=16% Similarity=0.139 Sum_probs=68.5
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHc----CC-CeEEEEeccccC
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRL 276 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~er----g~-~~~~~~~d~~~L 276 (637)
....+.+++...++ .+|||+|||+|.++..|++. .+++++++ +.+++.++++ +. ++.+...+....
T Consensus 66 ~~~~l~~~l~~~~~--~~VLeiG~GsG~~t~~la~~~~~v~~vd~~-----~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 138 (212)
T PRK00312 66 MVARMTELLELKPG--DRVLEIGTGSGYQAAVLAHLVRRVFSVERI-----KTLQWEAKRRLKQLGLHNVSVRHGDGWKG 138 (212)
T ss_pred HHHHHHHhcCCCCC--CEEEEECCCccHHHHHHHHHhCEEEEEeCC-----HHHHHHHHHHHHHCCCCceEEEECCcccC
Confidence 34455556655544 49999999999999888776 34555554 4444444332 32 467777665432
Q ss_pred CCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 277 PYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 277 pfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
..+.+.||+|++...+.++ ..++.+.|+|||.+++...
T Consensus 139 ~~~~~~fD~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 139 WPAYAPFDRILVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCcCCCcCEEEEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 2234789999998755333 3567899999999999743
No 100
>PTZ00146 fibrillarin; Provisional
Probab=98.69 E-value=1.7e-07 Score=98.27 Aligned_cols=99 Identities=16% Similarity=0.189 Sum_probs=68.7
Q ss_pred ccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEecccc---CCCCCCCeeE
Q 006633 214 LKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR---LPYPSRAFDM 285 (637)
Q Consensus 214 ~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~---Lpfpd~sFDl 285 (637)
+.++. +|||+|||+|.++..+++. .|+++|+++.. .+.+++.+.++ .++.+...|+.. +..+..+||+
T Consensus 130 IkpG~--~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~-~~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDv 205 (293)
T PTZ00146 130 IKPGS--KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRS-GRDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDV 205 (293)
T ss_pred cCCCC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHH-HHHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCE
Confidence 44444 9999999999999999987 27777775422 22455555544 456666666542 2223458999
Q ss_pred EEeccccccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 286 AHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 286 V~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
|++... + ++ +...++.++.++|||||+|++.
T Consensus 206 V~~Dva--~-pd-q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 206 IFADVA--Q-PD-QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEEeCC--C-cc-hHHHHHHHHHHhccCCCEEEEE
Confidence 998763 1 22 4556778999999999999996
No 101
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.68 E-value=2.8e-07 Score=108.16 Aligned_cols=124 Identities=18% Similarity=0.182 Sum_probs=79.5
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----ccc----chhh-ccccccCCCCCccceeeecc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLI----GTYQ-NWCEAMSTYPRTYDLIHADS 548 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl~----~~~~-~wce~~~~yp~t~Dl~H~~~ 548 (637)
.++|||++||+|+|+-+++..+. -.|+.+|.++..+..+.+. |+- -+++ |..+-+..+.+.||+|=+|-
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga--~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGA--KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 47899999999999999988754 2466677777777766542 331 1122 32222222367899987752
Q ss_pred c-cccCC-------CCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCceeEEec
Q 006633 549 I-FSLYK-------DRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIAD 603 (637)
Q Consensus 549 l-fs~~~-------~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~~ 603 (637)
= |+..+ ..-+.+.++...-|+|+|||.+++......+....+.+..-.+.+.+..
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i~ 679 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEIT 679 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEEe
Confidence 2 11111 0112457888889999999999997655544445666677778887664
No 102
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.68 E-value=1.6e-08 Score=105.06 Aligned_cols=127 Identities=15% Similarity=0.232 Sum_probs=88.1
Q ss_pred hcchhhHHHHHHHHHHHHHhhhc--cCCC--------------CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCc
Q 006633 449 EMFREDTALWKKRVTYYKSVDYQ--LAQP--------------GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKI 512 (637)
Q Consensus 449 ~~f~~d~~~w~~~v~~y~~~~~~--l~~~--------------~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~ 512 (637)
..|.+.+++=...+..|+.+++. +.+| .....|||+|||+|+++.+|++.. ...|+.+|.++
T Consensus 8 ~~~~~~~~y~~~~~~~~e~~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~ 85 (263)
T PTZ00098 8 ITYLENNQYSDEGIKAYEFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICE 85 (263)
T ss_pred hhhhhccccccccchhHHHHhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCH
Confidence 45777777777777778876642 3332 245689999999999999887642 23566677777
Q ss_pred chhHHHHhhcc----cchhhcccccc--CCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 513 NTLGVIYERGL----IGTYQNWCEAM--STYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 513 ~~l~~~~eRgl----~~~~~~wce~~--~~yp-~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
+++..+.+|-- +... +..+ .+|| .+||+|++...|-.. ...+...+|-|+-|+|||||++++.|.
T Consensus 86 ~~~~~a~~~~~~~~~i~~~---~~D~~~~~~~~~~FD~V~s~~~l~h~-~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 86 KMVNIAKLRNSDKNKIEFE---ANDILKKDFPENTFDMIYSRDAILHL-SYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred HHHHHHHHHcCcCCceEEE---ECCcccCCCCCCCeEEEEEhhhHHhC-CHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 88888887632 2221 1222 2465 799999985544322 223568999999999999999999874
No 103
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.67 E-value=1.3e-07 Score=80.07 Aligned_cols=94 Identities=22% Similarity=0.328 Sum_probs=67.8
Q ss_pred EEEEECCCCchHHHHHhh-cC--CEEEEcCccccHHHHHHHHH---Hc--CCCeEEEEeccccCCC-CCCCeeEEEeccc
Q 006633 221 TAIDTGCGVASWGAYLMS-RN--ILAVSFAPRDTHEAQVQFAL---ER--GVPALIGVMASIRLPY-PSRAFDMAHCSRC 291 (637)
Q Consensus 221 ~VLDIGCGtG~~a~~La~-~~--v~~vdisp~Dls~a~i~~A~---er--g~~~~~~~~d~~~Lpf-pd~sFDlV~~s~~ 291 (637)
++||+|||.|.++..+++ .. +.++|+ ++.+.+.+. +. .....+...+...... ..+.||+|++..+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDI-----SPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeC-----CHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccc
Confidence 489999999999999887 33 444544 334443333 11 2345666666655543 5678999999998
Q ss_pred cccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 292 LIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 292 L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
++++.. ....++..+.+.|||||.+++.
T Consensus 76 ~~~~~~-~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHLVE-DLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeehhh-HHHHHHHHHHHHcCCCCEEEEE
Confidence 866344 7889999999999999999986
No 104
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.66 E-value=3.9e-07 Score=90.51 Aligned_cols=104 Identities=15% Similarity=0.123 Sum_probs=67.6
Q ss_pred HhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcC--CCeEEEEecccc-CCCCCCC
Q 006633 211 LINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIR-LPYPSRA 282 (637)
Q Consensus 211 lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg--~~~~~~~~d~~~-Lpfpd~s 282 (637)
.+...++ .+|||+|||+|.++..++.. .++++|+++..+..++. .+...+ .++.+...+... ++..++.
T Consensus 35 ~l~~~~~--~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~-n~~~~g~~~~v~~~~~d~~~~l~~~~~~ 111 (198)
T PRK00377 35 KLRLRKG--DMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRR-NAEKFGVLNNIVLIKGEAPEILFTINEK 111 (198)
T ss_pred HcCCCCc--CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHhCCCCCeEEEEechhhhHhhcCCC
Confidence 3344443 49999999999999887653 35566664433332221 222233 246666666654 3333468
Q ss_pred eeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 283 FDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 283 FDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
||.|++... .. +...++.++.++|||||.+++...
T Consensus 112 ~D~V~~~~~---~~--~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 112 FDRIFIGGG---SE--KLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred CCEEEECCC---cc--cHHHHHHHHHHHcCCCcEEEEEee
Confidence 999998542 22 678899999999999999998643
No 105
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.65 E-value=2.6e-07 Score=91.48 Aligned_cols=112 Identities=15% Similarity=0.068 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEecccc-
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIR- 275 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~- 275 (637)
......+.+.+....+ .+|||+|||+|.++..+++. .++++|+++..+..++.+.. +.+. ++.+...++..
T Consensus 26 ~~v~~~l~~~l~~~~~--~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~-~~~~~~v~~~~~d~~~~ 102 (196)
T PRK07402 26 REVRLLLISQLRLEPD--SVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCD-RFGVKNVEVIEGSAPEC 102 (196)
T ss_pred HHHHHHHHHhcCCCCC--CEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH-HhCCCCeEEEECchHHH
Confidence 3333345666655444 49999999999999988754 35566665543333322222 2232 46666666533
Q ss_pred CCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 276 LPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 276 Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++.....+|.|+... .. +...++.++.++|+|||+|++..+
T Consensus 103 ~~~~~~~~d~v~~~~-----~~-~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 103 LAQLAPAPDRVCIEG-----GR-PIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred HhhCCCCCCEEEEEC-----Cc-CHHHHHHHHHHhcCCCeEEEEEee
Confidence 222223457665422 22 567899999999999999999864
No 106
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.63 E-value=6.1e-07 Score=98.38 Aligned_cols=137 Identities=12% Similarity=0.120 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccC
Q 006633 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL 276 (637)
Q Consensus 201 ~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~L 276 (637)
.+.+++.+.+.++ . ..+|||+|||+|.++..++.. .++++|+++..+..++.+ +...+..+.+...|....
T Consensus 238 TE~LVe~aL~~l~--~--~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreN-a~~~g~rV~fi~gDl~e~ 312 (423)
T PRK14966 238 TEHLVEAVLARLP--E--NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKN-AADLGARVEFAHGSWFDT 312 (423)
T ss_pred HHHHHHHhhhccC--C--CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCcEEEEEcchhcc
Confidence 3445555544432 2 238999999999999988764 355565544333332222 223345677877776443
Q ss_pred CCC-CCCeeEEEeccccccCCcC-----------------------CHHHHHHHHHhcccCCeEEEEEeCCCCccccccC
Q 006633 277 PYP-SRAFDMAHCSRCLIPWGQY-----------------------ADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKG 332 (637)
Q Consensus 277 pfp-d~sFDlV~~s~~L~h~~~~-----------------------d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~ 332 (637)
.++ .++||+|+|+.-..+-.+. ....++.++.+.|+|||.+++....
T Consensus 313 ~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~--------- 383 (423)
T PRK14966 313 DMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF--------- 383 (423)
T ss_pred ccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc---------
Confidence 332 4579999997743221100 1225677778899999999987531
Q ss_pred CCCchhhhHHhHhhHHHHHHHhceeeec
Q 006633 333 WNRTTEDLKSEQNGIETIARSLCWKKLI 360 (637)
Q Consensus 333 w~~t~e~l~~~~~~ie~la~~l~w~~v~ 360 (637)
. ..+.++++.+..+|..+.
T Consensus 384 --~-------Q~e~V~~ll~~~Gf~~v~ 402 (423)
T PRK14966 384 --D-------QGAAVRGVLAENGFSGVE 402 (423)
T ss_pred --c-------HHHHHHHHHHHCCCcEEE
Confidence 1 123466667777775543
No 107
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.63 E-value=7.7e-07 Score=92.18 Aligned_cols=112 Identities=20% Similarity=0.243 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHc-----CCCeEEEEec
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER-----GVPALIGVMA 272 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~er-----g~~~~~~~~d 272 (637)
+.+++.+...+...+ ..+|||+|||+|.++..++.. .++++|+ ++.+++.++++ ..++.+...|
T Consensus 94 e~l~~~~~~~~~~~~--~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDi-----s~~~l~~a~~n~~~~~~~~i~~~~~d 166 (275)
T PRK09328 94 EELVEWALEALLLKE--PLRVLDLGTGSGAIALALAKERPDAEVTAVDI-----SPEALAVARRNAKHGLGARVEFLQGD 166 (275)
T ss_pred HHHHHHHHHhccccC--CCEEEEEcCcHHHHHHHHHHHCCCCEEEEEEC-----CHHHHHHHHHHHHhCCCCcEEEEEcc
Confidence 445555544433333 348999999999999999876 2445555 44455544433 2356677666
Q ss_pred cccCCCCCCCeeEEEeccccccC------CcC------------------CHHHHHHHHHhcccCCeEEEEEe
Q 006633 273 SIRLPYPSRAFDMAHCSRCLIPW------GQY------------------ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 273 ~~~Lpfpd~sFDlV~~s~~L~h~------~~~------------------d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
... ++++++||+|+++.-+... .++ ....++.++.++|+|||++++..
T Consensus 167 ~~~-~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 167 WFE-PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred ccC-cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 533 3346789999996533211 000 13467888889999999999964
No 108
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.62 E-value=4e-07 Score=93.37 Aligned_cols=117 Identities=19% Similarity=0.259 Sum_probs=80.7
Q ss_pred CcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHc----C--CCe
Q 006633 197 FPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER----G--VPA 266 (637)
Q Consensus 197 f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~er----g--~~~ 266 (637)
|..+.|.. .|..+.+... .++|||+|||+|..+..++++ .+.++++ .+.+.++|.+. . ..+
T Consensus 27 ~~~~~Dai--LL~~~~~~~~--~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEi-----q~~~a~~A~~nv~ln~l~~ri 97 (248)
T COG4123 27 FRYGTDAI--LLAAFAPVPK--KGRILDLGAGNGALGLLLAQRTEKAKIVGVEI-----QEEAAEMAQRNVALNPLEERI 97 (248)
T ss_pred cccccHHH--HHHhhccccc--CCeEEEecCCcCHHHHHHhccCCCCcEEEEEe-----CHHHHHHHHHHHHhCcchhce
Confidence 44456655 4666665444 569999999999999999988 3445544 55555555433 1 236
Q ss_pred EEEEeccccCC--CCCCCeeEEEeccccccCCcC----------------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 267 LIGVMASIRLP--YPSRAFDMAHCSRCLIPWGQY----------------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 267 ~~~~~d~~~Lp--fpd~sFDlV~~s~~L~h~~~~----------------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.+...|...+. ....+||+|+|+.-+..-... +.+.+++-..++|||||++.+..+
T Consensus 98 ~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 98 QVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred eEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 77777766654 344579999997654222110 566789999999999999999976
No 109
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.62 E-value=4.5e-08 Score=98.13 Aligned_cols=140 Identities=11% Similarity=0.122 Sum_probs=86.3
Q ss_pred CCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcC-----CCeEEEEeccccCCCCCCCeeEEEecccc
Q 006633 218 SIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG-----VPALIGVMASIRLPYPSRAFDMAHCSRCL 292 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg-----~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L 292 (637)
...++||.|+|.|+.+..|+-.-...||+. +..+..++.|.+.. ....+.....+....+.+.||+|++.+|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlV--Ep~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLV--EPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEE--ES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEe--ccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 356899999999999998876645455552 44556666666432 22455556666665556899999999999
Q ss_pred ccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeecc
Q 006633 293 IPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQ 361 (637)
Q Consensus 293 ~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~~ 361 (637)
.|++++|...+|+++...|+|+|.+++-..-..... ..+......+-...+.+.+++++.+++.+.+
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~--~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF--DEFDEEDSSVTRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE--EEEETTTTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC--cccCCccCeeecCHHHHHHHHHHcCCEEEEe
Confidence 999987888999999999999999999753211110 0111222222223445777888888887764
No 110
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.61 E-value=1.2e-08 Score=96.07 Aligned_cols=96 Identities=21% Similarity=0.350 Sum_probs=72.4
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhccccccCCC-CCccceeeeccccccCC
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTY-PRTYDLIHADSIFSLYK 554 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~y-p~t~Dl~H~~~lfs~~~ 554 (637)
....+|||+|||.|.++..|.+.+. +++.+|.++.++.. +......+ ....... +++||+|.|..+|....
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~--~~~~~~~~~~~fD~i~~~~~l~~~~ 92 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNF--DAQDPPFPDGSFDLIICNDVLEHLP 92 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEE--ECHTHHCHSSSEEEEEEESSGGGSS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhh--hhhhhhccccchhhHhhHHHHhhcc
Confidence 3477999999999999999988876 66777777566655 22212111 0112333 39999999999998766
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006633 555 DRCEMEDVLLEMDRILRPEGSVIIRDDV 582 (637)
Q Consensus 555 ~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 582 (637)
+...+|-+|-|+|+|||++++.+..
T Consensus 93 ---d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 93 ---DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp ---HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred ---cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 5789999999999999999999764
No 111
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.59 E-value=8.8e-08 Score=99.42 Aligned_cols=98 Identities=19% Similarity=0.169 Sum_probs=71.7
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhhcc---------cchhhccccccCCCC-Cccceeee
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL---------IGTYQNWCEAMSTYP-RTYDLIHA 546 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl---------~~~~~~wce~~~~yp-~t~Dl~H~ 546 (637)
..+|||+|||+|.++..|.++ +. --+|+.+|.+++|+..+.+|.- +...+.-.+.+ +|| .+||+|.+
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~-~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p~~~~sfD~V~~ 151 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGS-DGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-PFDDCYFDAITM 151 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-CCCCCCEeEEEE
Confidence 568999999999999888764 21 0256777888899999987631 11222112333 355 79999998
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 547 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 547 ~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
...+.... +...+|-||-|+|||||.+++.|
T Consensus 152 ~~~l~~~~---d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 152 GYGLRNVV---DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred ecccccCC---CHHHHHHHHHHHcCcCcEEEEEE
Confidence 76665443 56899999999999999999986
No 112
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.59 E-value=1.4e-06 Score=91.54 Aligned_cols=99 Identities=12% Similarity=0.077 Sum_probs=64.8
Q ss_pred CEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHH----cCC--CeEEEEeccccCCCCCCCeeEEEeccc
Q 006633 220 RTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALE----RGV--PALIGVMASIRLPYPSRAFDMAHCSRC 291 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~e----rg~--~~~~~~~d~~~Lpfpd~sFDlV~~s~~ 291 (637)
.+|||+|||+|.++..++++ +..++.+ |+++.+++.|++ .+. .+.+...|... ++++++||+|+++.-
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~av---Dis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDAV---DISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPP 198 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEEE---ECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCC
Confidence 48999999999999999976 3333333 444455544443 343 36777777533 345668999999742
Q ss_pred ccc------CCc----C-------------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 292 LIP------WGQ----Y-------------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 292 L~h------~~~----~-------------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
... ... + ....++.++.++|+|||.+++...
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 211 100 0 124678899999999999999754
No 113
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.58 E-value=4.5e-06 Score=91.05 Aligned_cols=129 Identities=16% Similarity=0.150 Sum_probs=83.0
Q ss_pred eeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cc-----cchhhccccccCCCC-Cccceeeec
Q 006633 479 RNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL-----IGTYQNWCEAMSTYP-RTYDLIHAD 547 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl-----~~~~~~wce~~~~yp-~t~Dl~H~~ 547 (637)
..|||+|||+|-.+.+|+++ |- ..|+.+|.+..++..+.+. +. +.++ +...++..+ .+||+|-|+
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~--~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~--~~D~l~~~~~~~fDlIlsN 305 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQ--AKVVFVDESPMAVASSRLNVETNMPEALDRCEFM--INNALSGVEPFRFNAVLCN 305 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCcccCceEEEE--EccccccCCCCCEEEEEEC
Confidence 58999999999999999775 22 2455567666677666542 11 1222 233444454 689999998
Q ss_pred cccccCC--CCcCHHHHHHHHhhcccCCcEEEEEe--CHHHHHHHHHHHhcCCceeEEeccCCCCCCcceEEEEEe
Q 006633 548 SIFSLYK--DRCEMEDVLLEMDRILRPEGSVIIRD--DVDILVKIKSITDGMEWEGRIADHENGPRQREKILFANK 619 (637)
Q Consensus 548 ~lfs~~~--~~c~~~~~l~e~dRiLrPgG~~i~~d--~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 619 (637)
--|-..+ ..-....++.+.-|+|+|||.++|-- ..++..+++++.. ++...... .+-+|+-++|
T Consensus 306 PPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg----~~~~va~~----~kf~vl~a~k 373 (378)
T PRK15001 306 PPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG----NCTTIATN----NKFVVLKAVK 373 (378)
T ss_pred cCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcC----CceEEccC----CCEEEEEEEe
Confidence 7765322 11123578889999999999999963 3446667777544 33333222 4667888887
No 114
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.57 E-value=1e-07 Score=97.44 Aligned_cols=99 Identities=20% Similarity=0.281 Sum_probs=76.6
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhccc-c-----hhhccccccCCCC-Cccceeeeccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLI-G-----TYQNWCEAMSTYP-RTYDLIHADSI 549 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~-~-----~~~~wce~~~~yp-~t~Dl~H~~~l 549 (637)
...+|||++||+|=+|..+++.-= .-.|+..|-+.+||.++.+|--= | .++.-.|.++ || ++||++=+..-
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP-f~D~sFD~vt~~fg 128 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP-FPDNSFDAVTISFG 128 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC-CCCCccCEEEeeeh
Confidence 578999999999999999987621 45778888888999999999762 2 2233335666 76 99999877433
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
+-.. -+++..|-||-|||+|||.+++-|
T Consensus 129 lrnv---~d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 129 LRNV---TDIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred hhcC---CCHHHHHHHHHHhhcCCeEEEEEE
Confidence 3322 378999999999999999998865
No 115
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.57 E-value=5.8e-07 Score=88.41 Aligned_cols=93 Identities=16% Similarity=0.150 Sum_probs=63.5
Q ss_pred CCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCC--------CCCCCeeE
Q 006633 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--------YPSRAFDM 285 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lp--------fpd~sFDl 285 (637)
+.+|||+|||+|.++..++++ .+.++|+++.. ....+.+...+....+ +++++||+
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~ 101 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDV 101 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCccE
Confidence 349999999999998888765 26677775521 1124556666655432 45678999
Q ss_pred EEeccccc---cCCcC------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 286 AHCSRCLI---PWGQY------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 286 V~~s~~L~---h~~~~------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|++..+.+ +|..+ +...++.++.++|+|||.+++...
T Consensus 102 V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 102 VMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred EEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 99865321 12210 136789999999999999999753
No 116
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.57 E-value=6.2e-07 Score=89.36 Aligned_cols=136 Identities=19% Similarity=0.242 Sum_probs=77.2
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCee
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFD 284 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFD 284 (637)
++.+.+.+...+. ...|-|+|||.+.++..+. .++.+.++ |+.. . +-.+..+|...+|++++++|
T Consensus 60 vd~iI~~l~~~~~-~~viaD~GCGdA~la~~~~-~~~~V~Sf---DLva--------~--n~~Vtacdia~vPL~~~svD 124 (219)
T PF05148_consen 60 VDVIIEWLKKRPK-SLVIADFGCGDAKLAKAVP-NKHKVHSF---DLVA--------P--NPRVTACDIANVPLEDESVD 124 (219)
T ss_dssp HHHHHHHHCTS-T-TS-EEEES-TT-HHHHH---S---EEEE---ESS---------S--STTEEES-TTS-S--TT-EE
T ss_pred HHHHHHHHHhcCC-CEEEEECCCchHHHHHhcc-cCceEEEe---eccC--------C--CCCEEEecCccCcCCCCcee
Confidence 3445555543332 3489999999999997764 34444455 3221 1 11356688999999999999
Q ss_pred EEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeecccCc
Q 006633 285 MAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKD 364 (637)
Q Consensus 285 lV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~~~~~ 364 (637)
++++...|+. . +...++.|+.|+|||||.|+|..- ..++. ..+...+..+.+|++...+...
T Consensus 125 v~VfcLSLMG--T-n~~~fi~EA~RvLK~~G~L~IAEV----~SRf~-----------~~~~F~~~~~~~GF~~~~~d~~ 186 (219)
T PF05148_consen 125 VAVFCLSLMG--T-NWPDFIREANRVLKPGGILKIAEV----KSRFE-----------NVKQFIKALKKLGFKLKSKDES 186 (219)
T ss_dssp EEEEES---S--S--HHHHHHHHHHHEEEEEEEEEEEE----GGG-S------------HHHHHHHHHCTTEEEEEEE--
T ss_pred EEEEEhhhhC--C-CcHHHHHHHHheeccCcEEEEEEe----cccCc-----------CHHHHHHHHHHCCCeEEecccC
Confidence 9998776632 2 788999999999999999999853 11111 1234556677889988775332
Q ss_pred -----EEEEeccCC
Q 006633 365 -----LAIWQKPTN 373 (637)
Q Consensus 365 -----~aIWqKP~~ 373 (637)
+..++|..+
T Consensus 187 n~~F~~f~F~K~~~ 200 (219)
T PF05148_consen 187 NKHFVLFEFKKIRK 200 (219)
T ss_dssp STTEEEEEEEE-SS
T ss_pred CCeEEEEEEEEcCc
Confidence 456677653
No 117
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.55 E-value=1.1e-06 Score=87.76 Aligned_cols=160 Identities=17% Similarity=0.325 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHH---HHHH-HHHcCC-----CeEEE
Q 006633 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEA---QVQF-ALERGV-----PALIG 269 (637)
Q Consensus 201 ~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a---~i~~-A~erg~-----~~~~~ 269 (637)
.+...+.|.+.++... .+|||||||||..+.+++++ +++ ..|.|.... .++. ..+.+. ++.+-
T Consensus 11 k~pIl~vL~~~l~~~~---~~vLEiaSGtGqHa~~FA~~lP~l~---WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lD 84 (204)
T PF06080_consen 11 KDPILEVLKQYLPDSG---TRVLEIASGTGQHAVYFAQALPHLT---WQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALD 84 (204)
T ss_pred HhHHHHHHHHHhCccC---ceEEEEcCCccHHHHHHHHHCCCCE---EcCCCCChHHHhhHHHHHHhcCCcccCCCeEee
Confidence 3445556666654332 26999999999999999987 332 222233322 2221 222221 23222
Q ss_pred EeccccCCC------CCCCeeEEEeccccccCCc-CCHHHHHHHHHhcccCCeEEEEEeCCCCccccccC--------C-
Q 006633 270 VMASIRLPY------PSRAFDMAHCSRCLIPWGQ-YADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKG--------W- 333 (637)
Q Consensus 270 ~~d~~~Lpf------pd~sFDlV~~s~~L~h~~~-~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~--------w- 333 (637)
+ .....|. ..++||+|+|..++ |+.+ +..+.+|+.+.++|+|||.|++.+|-..- ..+.. |
T Consensus 85 v-~~~~w~~~~~~~~~~~~~D~i~~~N~l-HI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~-G~~ts~SN~~FD~sL 161 (204)
T PF06080_consen 85 V-SAPPWPWELPAPLSPESFDAIFCINML-HISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRD-GKFTSESNAAFDASL 161 (204)
T ss_pred c-CCCCCccccccccCCCCcceeeehhHH-HhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccC-CEeCCcHHHHHHHHH
Confidence 1 1111222 35689999999988 5543 25678999999999999999999873321 11110 0
Q ss_pred --CCchhhhHHhHhhHHHHHHHhceeeecc-----cCcEEEEec
Q 006633 334 --NRTTEDLKSEQNGIETIARSLCWKKLIQ-----KKDLAIWQK 370 (637)
Q Consensus 334 --~~t~e~l~~~~~~ie~la~~l~w~~v~~-----~~~~aIWqK 370 (637)
....-.++. .+.++.++.+.+++.... .+.+.||+|
T Consensus 162 r~rdp~~GiRD-~e~v~~lA~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 162 RSRDPEWGIRD-IEDVEALAAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred hcCCCCcCccC-HHHHHHHHHHCCCccCcccccCCCCeEEEEeC
Confidence 011111221 345788888888876542 334677776
No 118
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.55 E-value=1.6e-07 Score=90.42 Aligned_cols=71 Identities=23% Similarity=0.122 Sum_probs=59.1
Q ss_pred ccHHHHHHHHHHcC--------CCeEEEEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 250 DTHEAQVQFALERG--------VPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 250 Dls~a~i~~A~erg--------~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
|+++.|++.|+++. .++.+.++|...+|+++++||+|+++.+++++. +...+++|+.|+|||||.|++..
T Consensus 4 D~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d 81 (160)
T PLN02232 4 DFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPGSRVSILD 81 (160)
T ss_pred cCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcCeEEEEEE
Confidence 55666666664331 247899999999999999999999999996665 89999999999999999999985
Q ss_pred C
Q 006633 322 P 322 (637)
Q Consensus 322 p 322 (637)
.
T Consensus 82 ~ 82 (160)
T PLN02232 82 F 82 (160)
T ss_pred C
Confidence 4
No 119
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.54 E-value=1.3e-07 Score=97.46 Aligned_cols=106 Identities=13% Similarity=0.154 Sum_probs=77.1
Q ss_pred HhhhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhh-ccccccCCCCCccceee
Q 006633 467 SVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQ-NWCEAMSTYPRTYDLIH 545 (637)
Q Consensus 467 ~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~-~wce~~~~yp~t~Dl~H 545 (637)
.++..+.. .....|||+|||.|.++.+|.++.- ...|+.+|.++.++..+.++++ .+.+ |- +.+. ...+||+|+
T Consensus 20 ~ll~~l~~-~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~~~-~~~~~d~-~~~~-~~~~fD~v~ 94 (255)
T PRK14103 20 DLLARVGA-ERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARERGV-DARTGDV-RDWK-PKPDTDVVV 94 (255)
T ss_pred HHHHhCCC-CCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhcCC-cEEEcCh-hhCC-CCCCceEEE
Confidence 34444544 4568899999999999999987610 1356777888899999999875 2222 21 2221 237899999
Q ss_pred eccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 546 ADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 546 ~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
++.+|-... +.+.+|.++-|+|||||++++..
T Consensus 95 ~~~~l~~~~---d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 95 SNAALQWVP---EHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred EehhhhhCC---CHHHHHHHHHHhCCCCcEEEEEc
Confidence 988876543 45889999999999999999963
No 120
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.54 E-value=3.1e-07 Score=92.42 Aligned_cols=109 Identities=17% Similarity=0.137 Sum_probs=69.4
Q ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-C----CEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCC
Q 006633 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-N----ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP 277 (637)
Q Consensus 203 ~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~----v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lp 277 (637)
.....+.+.+.+.++. +|||||||+|.+++.|+.. + |.+++..+.-...+...++.....++.+..+|...-.
T Consensus 59 ~~~a~~l~~L~l~pg~--~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~ 136 (209)
T PF01135_consen 59 SMVARMLEALDLKPGD--RVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGW 136 (209)
T ss_dssp HHHHHHHHHTTC-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTT
T ss_pred HHHHHHHHHHhcCCCC--EEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcc
Confidence 3455677777777766 9999999999999998876 2 4556654432222322222222236788888765433
Q ss_pred CCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 278 YPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 278 fpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
-....||.|++..+....+ ..+.+.||+||.+++-.
T Consensus 137 ~~~apfD~I~v~~a~~~ip--------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 137 PEEAPFDRIIVTAAVPEIP--------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp GGG-SEEEEEESSBBSS----------HHHHHTEEEEEEEEEEE
T ss_pred ccCCCcCEEEEeeccchHH--------HHHHHhcCCCcEEEEEE
Confidence 3456899999988774333 55778899999999964
No 121
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.51 E-value=1.1e-07 Score=99.60 Aligned_cols=113 Identities=15% Similarity=0.204 Sum_probs=74.4
Q ss_pred HHHHHHhhhccCCCCCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHH----HhhcccchhhccccccCC
Q 006633 462 VTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVI----YERGLIGTYQNWCEAMST 536 (637)
Q Consensus 462 v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~----~eRgl~~~~~~wce~~~~ 536 (637)
.+.+..++..++- ....+|||+|||.||++-+++++ ++ +|+.+..++++...+ .++||-....--+..+..
T Consensus 48 ~~k~~~~~~~~~l-~~G~~vLDiGcGwG~~~~~~a~~~g~---~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~ 123 (273)
T PF02353_consen 48 ERKLDLLCEKLGL-KPGDRVLDIGCGWGGLAIYAAERYGC---HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD 123 (273)
T ss_dssp HHHHHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG
T ss_pred HHHHHHHHHHhCC-CCCCEEEEeCCCccHHHHHHHHHcCc---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc
Confidence 3334444443333 34779999999999999999988 65 344444555666654 578885544444455666
Q ss_pred CCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 537 YPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 537 yp~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
++.+||-|=+.++|..... -+.+.++-+++|+|+|||.+++.
T Consensus 124 ~~~~fD~IvSi~~~Ehvg~-~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 124 LPGKFDRIVSIEMFEHVGR-KNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp ---S-SEEEEESEGGGTCG-GGHHHHHHHHHHHSETTEEEEEE
T ss_pred cCCCCCEEEEEechhhcCh-hHHHHHHHHHHHhcCCCcEEEEE
Confidence 7779999999899887643 46789999999999999999985
No 122
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.51 E-value=2.2e-06 Score=90.04 Aligned_cols=97 Identities=14% Similarity=0.136 Sum_probs=64.7
Q ss_pred CEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHH----cCCC--eEEEEeccccCCCCCCCeeEEEec
Q 006633 220 RTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALE----RGVP--ALIGVMASIRLPYPSRAFDMAHCS 289 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~e----rg~~--~~~~~~d~~~Lpfpd~sFDlV~~s 289 (637)
.+|||+|||+|.++..++.. .++++|+ +..+++.|++ .+.. +.+..+|... +++++.||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDi-----s~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsN 189 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDI-----SPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSN 189 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEEC-----CHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEEC
Confidence 48999999999999999875 3455555 4445444443 2332 6777776543 3455589999996
Q ss_pred cccccC------------CcC-----------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 290 RCLIPW------------GQY-----------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 290 ~~L~h~------------~~~-----------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.-...- .+. ....++.++.++|+|||++++...
T Consensus 190 PPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 190 PPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred CCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 322111 000 234678899999999999999754
No 123
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.50 E-value=1.2e-06 Score=89.97 Aligned_cols=153 Identities=19% Similarity=0.196 Sum_probs=94.6
Q ss_pred cCCCCCCCcccHHHHHHHHHHHhc--ccC-CCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCC
Q 006633 190 FPGGGTMFPRGADAYIDDIGKLIN--LKD-GSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV 264 (637)
Q Consensus 190 Fpg~g~~f~~g~~~~i~~L~~lL~--~~~-g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~ 264 (637)
+.|.|.||--..+.+.+.+. .-. ..+ ....++||||+|.|..+..|+.. .+.++++ +..|...-.++|.
T Consensus 64 ~LgRG~MFvfS~~Q~~~LL~-~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~-----S~~Mr~rL~~kg~ 137 (265)
T PF05219_consen 64 ILGRGSMFVFSEEQFRKLLR-ISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEA-----SPPMRWRLSKKGF 137 (265)
T ss_pred hhcCCcEEEecHHHHHHHhh-hhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecC-----CHHHHHHHHhCCC
Confidence 55667776555444433222 211 111 13468999999999999999886 5666655 5566666667774
Q ss_pred CeEEEEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe--CCCCcccccc-CCCCchhhhH
Q 006633 265 PALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG--PPVNWESHWK-GWNRTTEDLK 341 (637)
Q Consensus 265 ~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~--pp~~w~~~~~-~w~~t~e~l~ 341 (637)
.+ .+.....-.+..||+|.|.++|..-. ++..+|+++.+.|+|+|.+++.. |-..+.+... .|.+..+.+.
T Consensus 138 ~v----l~~~~w~~~~~~fDvIscLNvLDRc~--~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~ 211 (265)
T PF05219_consen 138 TV----LDIDDWQQTDFKFDVISCLNVLDRCD--RPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLP 211 (265)
T ss_pred eE----EehhhhhccCCceEEEeehhhhhccC--CHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcC
Confidence 32 23333333456899999999995555 79999999999999999999973 3222322222 2444444443
Q ss_pred HhHhhHHHHHHHh
Q 006633 342 SEQNGIETIARSL 354 (637)
Q Consensus 342 ~~~~~ie~la~~l 354 (637)
-.-...|+.+..+
T Consensus 212 ~~g~~~E~~v~~l 224 (265)
T PF05219_consen 212 VKGATFEEQVSSL 224 (265)
T ss_pred CCCCcHHHHHHHH
Confidence 3333344444444
No 124
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.49 E-value=1.3e-06 Score=84.93 Aligned_cols=101 Identities=20% Similarity=0.257 Sum_probs=71.5
Q ss_pred EEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHH----HHHcCCC--eEEEEeccccCCCCCCCeeEEEeccccc-
Q 006633 221 TAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQF----ALERGVP--ALIGVMASIRLPYPSRAFDMAHCSRCLI- 293 (637)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~----A~erg~~--~~~~~~d~~~Lpfpd~sFDlV~~s~~L~- 293 (637)
+|||+|||.|.+...|++.+... .+...|.++.++.. |..++.+ +.|.++|+..-.+..+.||+|+--..+.
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 89999999999999999985322 02222445455444 4445554 8899999887788889999999644331
Q ss_pred -cCCcC----CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 294 -PWGQY----ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 294 -h~~~~----d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.+.++ .+..++..+.++|+|||.|+|..-
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC 182 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC 182 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEec
Confidence 12211 335688999999999999999864
No 125
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.48 E-value=8.2e-07 Score=90.59 Aligned_cols=96 Identities=22% Similarity=0.255 Sum_probs=74.2
Q ss_pred CCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCC
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~ 296 (637)
.++|||||+|.|.++..++++ ++.++-+ |+. ..++.+.+ ...+.+..+|.. -++|. +|+++..++||+|.
T Consensus 101 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~---Dlp-~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~ 172 (241)
T PF00891_consen 101 FKTVVDVGGGSGHFAIALARAYPNLRATVF---DLP-EVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWS 172 (241)
T ss_dssp SSEEEEET-TTSHHHHHHHHHSTTSEEEEE---E-H-HHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-
T ss_pred ccEEEeccCcchHHHHHHHHHCCCCcceee---ccH-hhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhhhcc
Confidence 458999999999999999887 5544444 432 34455555 556888888877 66776 99999999999999
Q ss_pred cCCHHHHHHHHHhcccCC--eEEEEEeC
Q 006633 297 QYADGLYLIEVDRVLRPG--GYWILSGP 322 (637)
Q Consensus 297 ~~d~~~~L~ei~RvLKPG--G~Lvls~p 322 (637)
+++...+|+++.+.|+|| |.+++..+
T Consensus 173 d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 173 DEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 877889999999999999 99999864
No 126
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.47 E-value=6.5e-07 Score=86.64 Aligned_cols=103 Identities=14% Similarity=0.086 Sum_probs=69.4
Q ss_pred HHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHHcC---CCeEEEEeccccCCCCC
Q 006633 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERG---VPALIGVMASIRLPYPS 280 (637)
Q Consensus 206 ~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~erg---~~~~~~~~d~~~Lpfpd 280 (637)
+.+.+.+....+. +|||+|||+|.++..+++++ ++++++ ++.+++.++++. .++.+...|+..+++++
T Consensus 3 ~~i~~~~~~~~~~--~vLEiG~G~G~lt~~l~~~~~~v~~vE~-----~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~ 75 (169)
T smart00650 3 DKIVRAANLRPGD--TVLEIGPGKGALTEELLERAARVTAIEI-----DPRLAPRLREKFAAADNLTVIHGDALKFDLPK 75 (169)
T ss_pred HHHHHhcCCCCcC--EEEEECCCccHHHHHHHhcCCeEEEEEC-----CHHHHHHHHHHhccCCCEEEEECchhcCCccc
Confidence 3455555544443 89999999999999999884 455555 445555554442 35778888998888888
Q ss_pred CCeeEEEeccccccCCcCCHHHHHHHHHhc--ccCCeEEEEE
Q 006633 281 RAFDMAHCSRCLIPWGQYADGLYLIEVDRV--LRPGGYWILS 320 (637)
Q Consensus 281 ~sFDlV~~s~~L~h~~~~d~~~~L~ei~Rv--LKPGG~Lvls 320 (637)
..||.|+++.-+ |.. ...+..+.+. +.++|.|++.
T Consensus 76 ~~~d~vi~n~Py-~~~----~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 76 LQPYKVVGNLPY-NIS----TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred cCCCEEEECCCc-ccH----HHHHHHHHhcCCCcceEEEEEE
Confidence 789999998644 332 2333433332 4588888776
No 127
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.47 E-value=1.4e-07 Score=94.43 Aligned_cols=96 Identities=21% Similarity=0.287 Sum_probs=80.6
Q ss_pred CCEEEEECCCCchHHHHHhhcCC---EEEEcCccccHHHHHHHHHHc---CCCeEEEEeccccCCCCCCCeeEEEecccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNI---LAVSFAPRDTHEAQVQFALER---GVPALIGVMASIRLPYPSRAFDMAHCSRCL 292 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v---~~vdisp~Dls~a~i~~A~er---g~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L 292 (637)
...++|||||.|.....|...+| +.+ |.+..|++.++.. ++.....+.|-+.|+|.+++||+|+++..+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~-----DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl 147 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMM-----DTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL 147 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeee-----ecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhh
Confidence 34799999999999999998864 344 4566677666543 455677788999999999999999999999
Q ss_pred ccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 293 IPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 293 ~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
||.. +....+..+...|||.|.|+-+.
T Consensus 148 -HW~N-dLPg~m~~ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 148 -HWTN-DLPGSMIQCKLALKPDGLFIASM 174 (325)
T ss_pred -hhhc-cCchHHHHHHHhcCCCccchhHH
Confidence 9998 89999999999999999998874
No 128
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.47 E-value=4.5e-06 Score=86.32 Aligned_cols=117 Identities=17% Similarity=0.189 Sum_probs=70.2
Q ss_pred cHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcC--CCeEEEEecc
Q 006633 200 GADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG--VPALIGVMAS 273 (637)
Q Consensus 200 g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg--~~~~~~~~d~ 273 (637)
..+.+++.+...+... ....+|||+|||+|.++..+++. .++++|+ ++.+++.|+++- ....+...|.
T Consensus 69 ~Te~Lv~~~l~~~~~~-~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDi-----s~~al~~A~~N~~~~~~~~~~~D~ 142 (251)
T TIGR03704 69 RTEFLVDEAAALARPR-SGTLVVVDLCCGSGAVGAALAAALDGIELHAADI-----DPAAVRCARRNLADAGGTVHEGDL 142 (251)
T ss_pred cHHHHHHHHHHhhccc-CCCCEEEEecCchHHHHHHHHHhCCCCEEEEEEC-----CHHHHHHHHHHHHHcCCEEEEeec
Confidence 3455555555544321 12348999999999999998865 3455555 444444444321 1135666665
Q ss_pred cc-CCC-CCCCeeEEEeccccccCC------cC--------------C----HHHHHHHHHhcccCCeEEEEEeC
Q 006633 274 IR-LPY-PSRAFDMAHCSRCLIPWG------QY--------------A----DGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 274 ~~-Lpf-pd~sFDlV~~s~~L~h~~------~~--------------d----~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.. ++- ..+.||+|+++.-..+.. ++ + ...++..+.++|+|||.+++...
T Consensus 143 ~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 143 YDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 43 221 135799999986432210 00 1 23677788899999999999854
No 129
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.47 E-value=1.2e-07 Score=84.44 Aligned_cols=98 Identities=26% Similarity=0.354 Sum_probs=71.1
Q ss_pred ceeEeeecccchhhhhhhcC--CCeEEEEeccCCCCcchhHHHHhhc----c---cchhh-ccccccCCCCCccceeeec
Q 006633 478 YRNLLDMNAYLGGFAAALVD--DPLWVMNTVPVEAKINTLGVIYERG----L---IGTYQ-NWCEAMSTYPRTYDLIHAD 547 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~--~~v~~mnv~~~~~~~~~l~~~~eRg----l---~~~~~-~wce~~~~yp~t~Dl~H~~ 547 (637)
-.+|||+|||+|.++.+|++ .+. .|+.+|.++.+++.+.++- + |..++ |+ +.....+..||+|.+.
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~ 77 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGA---RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICS 77 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTS---EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEEC
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEEC
Confidence 35789999999999999998 444 4566677778888887775 2 33333 33 2224455679999998
Q ss_pred cccc--cCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 548 SIFS--LYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 548 ~lfs--~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
+ |+ .+-+......+|-++.+.|||||+++|++
T Consensus 78 ~-~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 G-FTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp S-GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred C-CccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 8 43 22222455788999999999999999975
No 130
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.46 E-value=7.7e-07 Score=95.18 Aligned_cols=107 Identities=12% Similarity=0.095 Sum_probs=68.8
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-C----CEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCC
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-N----ILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP 277 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~----v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lp 277 (637)
....+.+.+...++. +|||||||+|.++..+++. + ++++++++..+..++.. +.+.+. ++.+..+|....+
T Consensus 68 l~a~ll~~L~i~~g~--~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~-l~~~g~~nV~~i~gD~~~~~ 144 (322)
T PRK13943 68 LMALFMEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRN-VRRLGIENVIFVCGDGYYGV 144 (322)
T ss_pred HHHHHHHhcCCCCCC--EEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHH-HHHcCCCcEEEEeCChhhcc
Confidence 334455555555544 9999999999999999875 1 55565544333222221 122333 4677777766655
Q ss_pred CCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 278 YPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 278 fpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
.....||+|++...+.+ ....+.+.|+|||.+++..
T Consensus 145 ~~~~~fD~Ii~~~g~~~--------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 145 PEFAPYDVIFVTVGVDE--------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cccCCccEEEECCchHH--------hHHHHHHhcCCCCEEEEEe
Confidence 55578999999765432 2345778999999998864
No 131
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.4e-06 Score=87.20 Aligned_cols=104 Identities=17% Similarity=0.149 Sum_probs=74.9
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc----CC-CeEEEEeccccCCCC
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GV-PALIGVMASIRLPYP 279 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er----g~-~~~~~~~d~~~Lpfp 279 (637)
...+.+++...++. +|||||||+|..++.|++..-.++++ +..+...+.|+++ +. ++.+.++|...---+
T Consensus 61 vA~m~~~L~~~~g~--~VLEIGtGsGY~aAvla~l~~~V~si---Er~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~ 135 (209)
T COG2518 61 VARMLQLLELKPGD--RVLEIGTGSGYQAAVLARLVGRVVSI---ERIEELAEQARRNLETLGYENVTVRHGDGSKGWPE 135 (209)
T ss_pred HHHHHHHhCCCCCC--eEEEECCCchHHHHHHHHHhCeEEEE---EEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCC
Confidence 44567777777766 99999999999999999984344455 4455555555443 33 577777775443334
Q ss_pred CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 280 SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 280 d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
...||.|+.+.+....+ +.+.+.|||||.+++-.
T Consensus 136 ~aPyD~I~Vtaaa~~vP--------~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 136 EAPYDRIIVTAAAPEVP--------EALLDQLKPGGRLVIPV 169 (209)
T ss_pred CCCcCEEEEeeccCCCC--------HHHHHhcccCCEEEEEE
Confidence 57899999988775555 56778899999999964
No 132
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.45 E-value=1.8e-07 Score=95.68 Aligned_cols=114 Identities=21% Similarity=0.259 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc------cchhhc
Q 006633 456 ALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL------IGTYQN 529 (637)
Q Consensus 456 ~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl------~~~~~~ 529 (637)
+.|++.+.... . + .....|||++||+|-++..|++.-----.|+.+|-+++||.++.+|-- |-....
T Consensus 33 ~~wr~~~~~~~---~-~---~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~ 105 (233)
T PF01209_consen 33 RRWRRKLIKLL---G-L---RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQG 105 (233)
T ss_dssp ----SHHHHHH---T------S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-
T ss_pred HHHHHHHHhcc---C-C---CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEc
Confidence 67888665322 1 2 335699999999999998887641112366777888899999998733 222222
Q ss_pred cccccCCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 530 WCEAMSTYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 530 wce~~~~yp-~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
=.|.++ || .+||.|=+...+- +-.+.+..|-||-|||||||.++|-|
T Consensus 106 da~~lp-~~d~sfD~v~~~fglr---n~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 106 DAEDLP-FPDNSFDAVTCSFGLR---NFPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp BTTB---S-TT-EEEEEEES-GG---G-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CHHHhc-CCCCceeEEEHHhhHH---hhCCHHHHHHHHHHHcCCCeEEEEee
Confidence 224443 65 9999887644333 33567999999999999999999965
No 133
>PLN02244 tocopherol O-methyltransferase
Probab=98.45 E-value=3.6e-07 Score=98.39 Aligned_cols=97 Identities=16% Similarity=0.212 Sum_probs=67.4
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHh----hcccc---hhh-ccccccCCCC-Cccceeeec
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGLIG---TYQ-NWCEAMSTYP-RTYDLIHAD 547 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgl~~---~~~-~wce~~~~yp-~t~Dl~H~~ 547 (637)
...+|||+|||.|+++.+|+++- ..+|+.+|.++.++..+.+ +|+.. ... |.. . .+|| .+||+|.+.
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~-~-~~~~~~~FD~V~s~ 193 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADAL-N-QPFEDGQFDLVWSM 193 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcc-c-CCCCCCCccEEEEC
Confidence 45689999999999999998751 2355555666667665544 35522 211 222 1 2354 899999986
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 548 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 548 ~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
..+.... +...+|.||-|+|||||.++|.+
T Consensus 194 ~~~~h~~---d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 194 ESGEHMP---DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CchhccC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 6554433 45899999999999999999964
No 134
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.45 E-value=4.6e-07 Score=92.89 Aligned_cols=97 Identities=15% Similarity=0.227 Sum_probs=71.2
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc-cchhh-ccccccCCCC-Cccceeeecccccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IGTYQ-NWCEAMSTYP-RTYDLIHADSIFSL 552 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-~~~~~-~wce~~~~yp-~t~Dl~H~~~lfs~ 552 (637)
....+|||+|||+|.++..|.+.+. .|+.+|.++.++..+.++.- +.... |. +.++ +| .+||+|-++..+..
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~-~~~~-~~~~~fD~V~s~~~l~~ 115 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDI-ESLP-LATATFDLAWSNLAVQW 115 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCc-ccCc-CCCCcEEEEEECchhhh
Confidence 3467899999999999999987653 56677887789998888753 11111 21 3333 44 79999988655432
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 553 YKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 553 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
--+...+|-|+-|+|||||.++++.
T Consensus 116 ---~~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 116 ---CGNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred ---cCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 2356899999999999999999984
No 135
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.45 E-value=6.7e-07 Score=95.99 Aligned_cols=105 Identities=22% Similarity=0.312 Sum_probs=65.2
Q ss_pred CCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHH-H-----cC----CCeEEEEeccccC----CCC-
Q 006633 218 SIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFAL-E-----RG----VPALIGVMASIRL----PYP- 279 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~-e-----rg----~~~~~~~~d~~~L----pfp- 279 (637)
...+|||+|||-|.-..-....+ +.++|++...+.++..+... . +. ..+.+...|.... .++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 45699999999887655555553 45566655444443333311 0 01 2456666664321 133
Q ss_pred -CCCeeEEEeccccccCCcC--CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 280 -SRAFDMAHCSRCLIPWGQY--ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 280 -d~sFDlV~~s~~L~h~~~~--d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
...||+|-|.+++|+.... ....+|.++.+.|||||+|+.+.|
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 3599999999999766542 344689999999999999999987
No 136
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.44 E-value=2.8e-06 Score=90.37 Aligned_cols=97 Identities=13% Similarity=0.084 Sum_probs=64.6
Q ss_pred CEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHH----cCC--CeEEEEeccccCCCCCCCeeEEEec
Q 006633 220 RTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALE----RGV--PALIGVMASIRLPYPSRAFDMAHCS 289 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~e----rg~--~~~~~~~d~~~Lpfpd~sFDlV~~s 289 (637)
.+|||+|||+|.++..++.. .++++|+ ++.+++.|++ .+. .+.+...|... ++++++||+|+++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDi-----s~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsN 208 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDI-----SPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSN 208 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeC-----CHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEEC
Confidence 48999999999999999876 3455555 4444444433 233 36777777533 2345689999997
Q ss_pred cccc-------------cCCc----------CCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 290 RCLI-------------PWGQ----------YADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 290 ~~L~-------------h~~~----------~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.-.. |.+. +....++.++.++|+|||.+++...
T Consensus 209 PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 209 PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 4221 1110 0124678999999999999999743
No 137
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.43 E-value=1.7e-06 Score=88.10 Aligned_cols=130 Identities=18% Similarity=0.268 Sum_probs=86.2
Q ss_pred HHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEE
Q 006633 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAH 287 (637)
Q Consensus 208 L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~ 287 (637)
|.+.|...++ ...|-|+|||.+.++..- ...|..+|+.+ ++-.+..+|....|.+|++.|+++
T Consensus 171 ii~~ik~r~~-~~vIaD~GCGEakiA~~~-~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d~svDvaV 233 (325)
T KOG3045|consen 171 IIRKIKRRPK-NIVIADFGCGEAKIASSE-RHKVHSFDLVA---------------VNERVIACDMRNVPLEDESVDVAV 233 (325)
T ss_pred HHHHHHhCcC-ceEEEecccchhhhhhcc-ccceeeeeeec---------------CCCceeeccccCCcCccCcccEEE
Confidence 4444443333 347899999999876511 12566555522 223456778889999999999999
Q ss_pred eccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeecccCc---
Q 006633 288 CSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKKD--- 364 (637)
Q Consensus 288 ~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~~~~~--- 364 (637)
+...| ... +...++.|+.|+|||||.|++..-. .++. ....+.+....++|........
T Consensus 234 ~CLSL--Mgt-n~~df~kEa~RiLk~gG~l~IAEv~----SRf~-----------dv~~f~r~l~~lGF~~~~~d~~n~~ 295 (325)
T KOG3045|consen 234 FCLSL--MGT-NLADFIKEANRILKPGGLLYIAEVK----SRFS-----------DVKGFVRALTKLGFDVKHKDVSNKY 295 (325)
T ss_pred eeHhh--hcc-cHHHHHHHHHHHhccCceEEEEehh----hhcc-----------cHHHHHHHHHHcCCeeeehhhhcce
Confidence 76555 233 7889999999999999999998531 1121 1222556677889977654433
Q ss_pred --EEEEeccC
Q 006633 365 --LAIWQKPT 372 (637)
Q Consensus 365 --~aIWqKP~ 372 (637)
+..++|+.
T Consensus 296 F~lfefkK~~ 305 (325)
T KOG3045|consen 296 FTLFEFKKTP 305 (325)
T ss_pred EEEEEEecCC
Confidence 45677764
No 138
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.41 E-value=3.5e-05 Score=83.21 Aligned_cols=130 Identities=17% Similarity=0.133 Sum_probs=81.4
Q ss_pred eEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHh----hcccchhhccccccCCCCCccceeeeccccccC-
Q 006633 480 NLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYE----RGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLY- 553 (637)
Q Consensus 480 ~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~e----Rgl~~~~~~wce~~~~yp~t~Dl~H~~~lfs~~- 553 (637)
.|||+|||+|.++.+|.++ +- ..|+.+|.+...+..+.+ .|+-+.+ .+...++..+..||+|-++--|-..
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~--~~v~~vDis~~Al~~A~~nl~~n~l~~~~-~~~D~~~~~~~~fDlIvsNPPFH~g~ 275 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPK--IRLTLSDVSAAALESSRATLAANGLEGEV-FASNVFSDIKGRFDMIISNPPFHDGI 275 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCEE-EEcccccccCCCccEEEECCCccCCc
Confidence 5999999999999999875 32 235556666566665543 3442222 2333444456899999998766321
Q ss_pred -CCCcCHHHHHHHHhhcccCCcEEEEEeCH--HHHHHHHHHHhcCCceeEEeccCCCCCCcceEEEEEec
Q 006633 554 -KDRCEMEDVLLEMDRILRPEGSVIIRDDV--DILVKIKSITDGMEWEGRIADHENGPRQREKILFANKK 620 (637)
Q Consensus 554 -~~~c~~~~~l~e~dRiLrPgG~~i~~d~~--~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K~ 620 (637)
.+.-..+.++.++-|.|+|||.++|--+. .+-..+++..... ++.. +. .+-||+-++|.
T Consensus 276 ~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~~--~~la-~~-----~~f~v~~a~~~ 337 (342)
T PRK09489 276 QTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGSH--EVLA-QT-----GRFKVYRAIMT 337 (342)
T ss_pred cccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCCe--EEEE-eC-----CCEEEEEEEcc
Confidence 11234578999999999999999886432 2334555554432 2222 11 35788887763
No 139
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.40 E-value=3.1e-06 Score=85.82 Aligned_cols=99 Identities=20% Similarity=0.222 Sum_probs=76.1
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHH-HcCC----------------CeEEEEeccccCCCCC-
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFAL-ERGV----------------PALIGVMASIRLPYPS- 280 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~-erg~----------------~~~~~~~d~~~Lpfpd- 280 (637)
..+||..|||.|.-+.+|+++|..++++ |+++..++.+. +++. .+.+.++|...++-..
T Consensus 38 ~~rvLvPgCG~g~D~~~La~~G~~VvGv---Dls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~ 114 (218)
T PF05724_consen 38 GGRVLVPGCGKGYDMLWLAEQGHDVVGV---DLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDV 114 (218)
T ss_dssp SEEEEETTTTTSCHHHHHHHTTEEEEEE---ES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCH
T ss_pred CCeEEEeCCCChHHHHHHHHCCCeEEEE---ecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhc
Confidence 3489999999999999999998877777 78888887763 3322 2456677877765433
Q ss_pred CCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 281 RAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 281 ~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
+.||+|+=..+|+-++++...++.+.+.++|+|||.+++.
T Consensus 115 g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 115 GKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp HSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 5799999888888888778889999999999999995444
No 140
>PHA03411 putative methyltransferase; Provisional
Probab=98.40 E-value=2e-06 Score=89.54 Aligned_cols=98 Identities=11% Similarity=0.061 Sum_probs=72.1
Q ss_pred CCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCC
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~ 296 (637)
..+|||+|||+|.++..++.+ +..++.+ |+++.+++.++++...+.+...|...+. .+++||+|+++..+.|..
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gV---Disp~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~ 140 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCV---ELNPEFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFGKIN 140 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEE---ECCHHHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCccccC
Confidence 348999999999998888765 3344444 5566777778776556778888877665 346899999998886654
Q ss_pred cCC------------------HHHHHHHHHhcccCCeEEEEE
Q 006633 297 QYA------------------DGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 297 ~~d------------------~~~~L~ei~RvLKPGG~Lvls 320 (637)
..+ ...++..+.++|+|+|.+.+.
T Consensus 141 ~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 141 TTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred chhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 321 245778888999999987776
No 141
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.38 E-value=1.5e-06 Score=86.24 Aligned_cols=150 Identities=13% Similarity=0.156 Sum_probs=91.9
Q ss_pred ccCcchhcchh--hHHHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHh
Q 006633 443 VDGVTAEMFRE--DTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE 520 (637)
Q Consensus 443 ~~g~~~~~f~~--d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e 520 (637)
.+|+..+.|.. +...|++.|+.- .+..+.. .....|||+|||.|.++.+++..---.-.|+.+|.++.++..+.+
T Consensus 7 ~~~~~d~~~~~~~~~~~t~~~~r~~--~l~~l~~-~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~ 83 (198)
T PRK00377 7 IPGIPDEEFERDEEIPMTKEEIRAL--ALSKLRL-RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRR 83 (198)
T ss_pred CCCCChHHHccCCCCCCCHHHHHHH--HHHHcCC-CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence 35666667775 334777776522 1222333 346689999999999988764320001245556666667776544
Q ss_pred h----ccc---chhh-ccccccCCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHH
Q 006633 521 R----GLI---GTYQ-NWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR-DDVDILVKIKSI 591 (637)
Q Consensus 521 R----gl~---~~~~-~wce~~~~yp~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~ 591 (637)
+ |+. -++. |..+.+...+..||+|.+.+ ....++.+|-++.|+|+|||.+++. -..+.+.++.+.
T Consensus 84 n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~ 157 (198)
T PRK00377 84 NAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG------GSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSA 157 (198)
T ss_pred HHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC------CcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHH
Confidence 3 431 1221 22222223346799877632 2245788999999999999999983 355677788887
Q ss_pred HhcCCceeEE
Q 006633 592 TDGMEWEGRI 601 (637)
Q Consensus 592 ~~~~~W~~~~ 601 (637)
++.+.++..+
T Consensus 158 l~~~g~~~~~ 167 (198)
T PRK00377 158 LENIGFNLEI 167 (198)
T ss_pred HHHcCCCeEE
Confidence 7777766553
No 142
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.38 E-value=5e-07 Score=94.13 Aligned_cols=103 Identities=20% Similarity=0.273 Sum_probs=68.8
Q ss_pred CceeEeeecccchhhhhhhcCC-C-eEEEEeccCCCCcchhHHHHhhcc-cchhh-ccccccCCCC-Cccceeeeccccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD-P-LWVMNTVPVEAKINTLGVIYERGL-IGTYQ-NWCEAMSTYP-RTYDLIHADSIFS 551 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~-~-v~~mnv~~~~~~~~~l~~~~eRgl-~~~~~-~wce~~~~yp-~t~Dl~H~~~lfs 551 (637)
...+|||+|||.|.+++.|.+. + .-..+|+.+|.++.++..+.++.- +.... |. +. .+++ .+||+|.+ +|+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~-~~-lp~~~~sfD~I~~--~~~ 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASS-HR-LPFADQSLDAIIR--IYA 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeec-cc-CCCcCCceeEEEE--ecC
Confidence 3467999999999999988653 1 111367888888899999887742 11111 11 22 2454 79999986 232
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHH
Q 006633 552 LYKDRCEMEDVLLEMDRILRPEGSVIIRDDV-DILVKIKSI 591 (637)
Q Consensus 552 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~ 591 (637)
+..+-|+.|+|+|||++|+.... ..+..++.+
T Consensus 161 --------~~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~ 193 (272)
T PRK11088 161 --------PCKAEELARVVKPGGIVITVTPGPRHLFELKGL 193 (272)
T ss_pred --------CCCHHHHHhhccCCCEEEEEeCCCcchHHHHHH
Confidence 33467999999999999997543 233444443
No 143
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.36 E-value=2.5e-06 Score=83.71 Aligned_cols=115 Identities=17% Similarity=0.122 Sum_probs=77.7
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cccchhhcccc-ccCCCCCccceeeeccccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCE-AMSTYPRTYDLIHADSIFS 551 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wce-~~~~yp~t~Dl~H~~~lfs 551 (637)
...+|||+|||.|.++.++++.. --.+|..+|.++.++..+.++ |+ .-+.-.+. ....++..||+|.+++..
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~~~~~~~D~v~~~~~~- 107 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPIELPGKADAIFIGGSG- 107 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchhhcCcCCCEEEECCCc-
Confidence 35689999999999998886541 013455566665666666442 33 11111111 223456789999886532
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEe-CHHHHHHHHHHHhcCCcee
Q 006633 552 LYKDRCEMEDVLLEMDRILRPEGSVIIRD-DVDILVKIKSITDGMEWEG 599 (637)
Q Consensus 552 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d-~~~~~~~~~~~~~~~~W~~ 599 (637)
..++.++.++-|+|+|||++++.+ ..+...++.++++...++.
T Consensus 108 -----~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~ 151 (187)
T PRK08287 108 -----GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSE 151 (187)
T ss_pred -----cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCc
Confidence 357889999999999999999976 4566677778888777753
No 144
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.36 E-value=5.4e-07 Score=89.43 Aligned_cols=96 Identities=15% Similarity=0.230 Sum_probs=67.4
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHh----hcccchhhccccc-cCCCCCccceeeecccccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGLIGTYQNWCEA-MSTYPRTYDLIHADSIFSL 552 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgl~~~~~~wce~-~~~yp~t~Dl~H~~~lfs~ 552 (637)
..+|||+|||+|.++.+|++++ ..|..+|.++.++..+.+ .|+ .+...-++. -..++.+||+|.+..+|..
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENL-PLRTDAYDINAAALNEDYDFIFSTVVFMF 106 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCC-CceeEeccchhccccCCCCEEEEeccccc
Confidence 3589999999999999999875 367778888778876543 344 111111111 1124578999999887754
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEE
Q 006633 553 YKDRCEMEDVLLEMDRILRPEGSVII 578 (637)
Q Consensus 553 ~~~~c~~~~~l~e~dRiLrPgG~~i~ 578 (637)
.. .-+++.++-++.|+|+|||++++
T Consensus 107 ~~-~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 107 LQ-AGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred CC-HHHHHHHHHHHHHHhCCCcEEEE
Confidence 32 23668999999999999999555
No 145
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.35 E-value=3.9e-06 Score=93.15 Aligned_cols=111 Identities=15% Similarity=0.193 Sum_probs=71.3
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHH----HcCCCeEEEEeccccCC--C
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFAL----ERGVPALIGVMASIRLP--Y 278 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~----erg~~~~~~~~d~~~Lp--f 278 (637)
.+...+...++ .+|||+|||+|..+..++++. ..++.+ |.++.+++.++ ..+..+.+...|...++ +
T Consensus 235 ~~~~~l~~~~g--~~VLDlgaG~G~~t~~la~~~~~~~v~a~---D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~ 309 (427)
T PRK10901 235 LAATLLAPQNG--ERVLDACAAPGGKTAHILELAPQAQVVAL---DIDAQRLERVRENLQRLGLKATVIVGDARDPAQWW 309 (427)
T ss_pred HHHHHcCCCCC--CEEEEeCCCCChHHHHHHHHcCCCEEEEE---eCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhc
Confidence 34445554444 499999999999999998762 233333 44444444433 33555677777776654 3
Q ss_pred CCCCeeEEEecc----c--cc-----cCCc--C-------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 279 PSRAFDMAHCSR----C--LI-----PWGQ--Y-------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 279 pd~sFDlV~~s~----~--L~-----h~~~--~-------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+.++||.|++.. . +. .|.. + ....++.++.++|||||.+++++.
T Consensus 310 ~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 310 DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 467899999532 1 10 1211 0 124689999999999999999864
No 146
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.35 E-value=1.8e-06 Score=87.24 Aligned_cols=98 Identities=19% Similarity=0.296 Sum_probs=66.2
Q ss_pred ceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcchhHHHHhh----cc--cchhhccccccCCCC-Cccceeeecc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTYP-RTYDLIHADS 548 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~~wce~~~~yp-~t~Dl~H~~~ 548 (637)
..+|||+|||.|.++..|.+. +- .+|+.+|.+++++..+.++ ++ +.+++.=.+.+ ++| .+||+|++..
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~~~ 122 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPE--GHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL-PFDDNSFDYVTIGF 122 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC-CCCCCCccEEEEec
Confidence 568999999999999988764 11 2455566666777666554 22 12222111222 345 7999999876
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
.+.... +...+|-|+-|+|||||.+++.+.
T Consensus 123 ~l~~~~---~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 123 GLRNVP---DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred ccccCC---CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 654333 457899999999999999998753
No 147
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.35 E-value=4.7e-07 Score=90.80 Aligned_cols=145 Identities=19% Similarity=0.204 Sum_probs=104.5
Q ss_pred hhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhh-ccccccC--CCCCccceee
Q 006633 469 DYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQ-NWCEAMS--TYPRTYDLIH 545 (637)
Q Consensus 469 ~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~-~wce~~~--~yp~t~Dl~H 545 (637)
+..... +..|.+||+|||+|-+|-+|.+. +--+..+|.++|||..+.|+|++-++. -=...|+ .=++-||||-
T Consensus 118 I~~~~~-g~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~ 193 (287)
T COG4976 118 IGKADL-GPFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIV 193 (287)
T ss_pred HHhccC-CccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchh
Confidence 344555 66999999999999999999765 223456688999999999999976443 2123466 3478999999
Q ss_pred eccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH----------------HHHHHHHHHHhcCCceeEEe-----cc
Q 006633 546 ADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV----------------DILVKIKSITDGMEWEGRIA-----DH 604 (637)
Q Consensus 546 ~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~----------------~~~~~~~~~~~~~~W~~~~~-----~~ 604 (637)
+.-||+... .++.+|.-.++.|.|||.|+|+... .-...|....++-.-+++.+ -.
T Consensus 194 AaDVl~YlG---~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~ 270 (287)
T COG4976 194 AADVLPYLG---ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRR 270 (287)
T ss_pred hhhHHHhhc---chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccchh
Confidence 988888654 5699999999999999999998210 02245666666666666522 22
Q ss_pred CCCCCCcceEEEEEec
Q 006633 605 ENGPRQREKILFANKK 620 (637)
Q Consensus 605 e~~~~~~~~~l~~~K~ 620 (637)
+.|.-.+..+.|++|+
T Consensus 271 d~g~pv~G~L~iark~ 286 (287)
T COG4976 271 DAGEPVPGILVIARKK 286 (287)
T ss_pred hcCCCCCCceEEEecC
Confidence 3343356778888875
No 148
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.34 E-value=7.9e-07 Score=95.16 Aligned_cols=96 Identities=16% Similarity=0.151 Sum_probs=64.6
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHH--HHhhcc-----cchhhccccccCCCCCccceeeecccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGV--IYERGL-----IGTYQNWCEAMSTYPRTYDLIHADSIF 550 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~--~~eRgl-----~~~~~~wce~~~~yp~t~Dl~H~~~lf 550 (637)
.+.|||+|||.|.++.+|++.+- -.|+.+|.+..++.. +..+.+ +-+...=.+.++. +.+||+|+|.+++
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl 199 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVL 199 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChh
Confidence 47999999999999999987642 125556665444432 111211 1111100123333 7899999998876
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 551 SLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 551 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
. ++-+...+|.++-|+|||||.+|+.
T Consensus 200 ~---H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 200 Y---HRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred h---ccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 4 3456789999999999999999986
No 149
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.34 E-value=7.2e-07 Score=88.68 Aligned_cols=95 Identities=15% Similarity=0.245 Sum_probs=67.3
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHH----hhccc--c-hhhccccccCCCCCccceeeecccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIY----ERGLI--G-TYQNWCEAMSTYPRTYDLIHADSIF 550 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~----eRgl~--~-~~~~wce~~~~yp~t~Dl~H~~~lf 550 (637)
..+|||+|||.|.++.+|++++. +|..+|.++.++..+. ++|+- - ...|+.+ + +++.+||+|-+..+|
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~fD~I~~~~~~ 105 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN-L-TFDGEYDFILSTVVL 105 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh-C-CcCCCcCEEEEecch
Confidence 35899999999999999998753 6667777767776644 34441 1 1123221 1 246789999998776
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEE
Q 006633 551 SLYKDRCEMEDVLLEMDRILRPEGSVII 578 (637)
Q Consensus 551 s~~~~~c~~~~~l~e~dRiLrPgG~~i~ 578 (637)
-.. +.-+++.++-+|.|+|||||++++
T Consensus 106 ~~~-~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 106 MFL-EAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hhC-CHHHHHHHHHHHHHHcCCCcEEEE
Confidence 432 334578999999999999999655
No 150
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.34 E-value=8.6e-07 Score=93.21 Aligned_cols=116 Identities=16% Similarity=0.193 Sum_probs=79.4
Q ss_pred eeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHH----hhcccchhhccccccCC--CCCccceeeecccccc
Q 006633 479 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIY----ERGLIGTYQNWCEAMST--YPRTYDLIHADSIFSL 552 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~----eRgl~~~~~~wce~~~~--yp~t~Dl~H~~~lfs~ 552 (637)
.+|||+|||.|.++.+|++++. .|..+|.++.++..+. +.|+ . ++--+..+.. .+..||+|-+..+|..
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l-~-v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENL-N-IRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCC-c-eEEEEechhcccccCCccEEEEcchhhh
Confidence 3899999999999999988763 5677788777776653 3455 1 1111122222 2689999999887754
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEEe---CH--------H---HHHHHHHHHhcCCceeEEe
Q 006633 553 YKDRCEMEDVLLEMDRILRPEGSVIIRD---DV--------D---ILVKIKSITDGMEWEGRIA 602 (637)
Q Consensus 553 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d---~~--------~---~~~~~~~~~~~~~W~~~~~ 602 (637)
. ++-+++.++-+|.|+|+|||++++-. .. . .-..++++.+. |++..+
T Consensus 197 l-~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 197 L-NRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred C-CHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 3 33467899999999999999966531 11 1 23556677766 888755
No 151
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.33 E-value=2.9e-06 Score=94.44 Aligned_cols=113 Identities=18% Similarity=0.134 Sum_probs=72.0
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCC---
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP--- 277 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lp--- 277 (637)
.+...+...++ .+|||+|||+|..+..+++. .++++|+++..+...+.+ +...|. ++.+...|...++
T Consensus 243 l~~~~l~~~~g--~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n-~~r~g~~~v~~~~~D~~~~~~~~ 319 (434)
T PRK14901 243 LVAPLLDPQPG--EVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQEN-AQRLGLKSIKILAADSRNLLELK 319 (434)
T ss_pred HHHHHhCCCCc--CEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHH-HHHcCCCeEEEEeCChhhccccc
Confidence 34445544444 49999999999999888875 245555544333222222 223344 4677777877665
Q ss_pred -CCCCCeeEEEec------cccccCCc-------C-------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 278 -YPSRAFDMAHCS------RCLIPWGQ-------Y-------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 278 -fpd~sFDlV~~s------~~L~h~~~-------~-------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+..++||.|++. .++.+-++ + ....+|.++.++|||||+++.++.
T Consensus 320 ~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystc 385 (434)
T PRK14901 320 PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATC 385 (434)
T ss_pred ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 446789999962 22222111 0 145789999999999999999864
No 152
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.33 E-value=1.1e-05 Score=79.30 Aligned_cols=106 Identities=11% Similarity=-0.026 Sum_probs=68.6
Q ss_pred HHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHH-HcC-CCeEEEEeccccCCCCCCCe
Q 006633 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFAL-ERG-VPALIGVMASIRLPYPSRAF 283 (637)
Q Consensus 208 L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~-erg-~~~~~~~~d~~~Lpfpd~sF 283 (637)
....|.+.+++ +++|||||+|+.+..++.. ...++.++...-....++... +-+ .++.+..+++...--...+|
T Consensus 26 ~ls~L~~~~g~--~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~ 103 (187)
T COG2242 26 TLSKLRPRPGD--RLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSP 103 (187)
T ss_pred HHHhhCCCCCC--EEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCC
Confidence 34444455555 9999999999999999833 344444422211222222222 223 35677766654331122279
Q ss_pred eEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 284 DMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 284 DlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
|.|+..... ..+.+|+.+...|||||.+++..
T Consensus 104 daiFIGGg~------~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 104 DAIFIGGGG------NIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred CEEEECCCC------CHHHHHHHHHHHcCcCCeEEEEe
Confidence 999998764 67789999999999999999975
No 153
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.32 E-value=1.4e-06 Score=85.66 Aligned_cols=131 Identities=14% Similarity=0.199 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHH----hhcc--cchhh
Q 006633 456 ALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIY----ERGL--IGTYQ 528 (637)
Q Consensus 456 ~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~----eRgl--~~~~~ 528 (637)
+.|++.+-.-..++..+. ..+|||+|||+|.++..|+.. +- ..|+.+|.++.++.++. +.|+ +.+++
T Consensus 25 ~~~~~~~~d~i~~~~~~~----~~~vLDiGcGtG~~s~~la~~~~~--~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~ 98 (181)
T TIGR00138 25 EIWERHILDSLKLLEYLD----GKKVIDIGSGAGFPGIPLAIARPE--LKLTLLESNHKKVAFLREVKAELGLNNVEIVN 98 (181)
T ss_pred HHHHHHHHHHHHHHHhcC----CCeEEEecCCCCccHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEe
Confidence 467766643222333332 468999999999888876532 11 34566677766665543 3354 33333
Q ss_pred ccccccCCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCC-ceeE
Q 006633 529 NWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGME-WEGR 600 (637)
Q Consensus 529 ~wce~~~~yp~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~-W~~~ 600 (637)
.=.+.+ ....+||+|-+++ + ..+++++-++.|+|||||.+++.........+..+.+.++ |...
T Consensus 99 ~d~~~~-~~~~~fD~I~s~~-~------~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~ 163 (181)
T TIGR00138 99 GRAEDF-QHEEQFDVITSRA-L------ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVE 163 (181)
T ss_pred cchhhc-cccCCccEEEehh-h------hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCce
Confidence 111222 2347999998855 1 3578889999999999999999877766667766665533 4444
No 154
>PRK00811 spermidine synthase; Provisional
Probab=98.32 E-value=6.4e-06 Score=86.66 Aligned_cols=98 Identities=13% Similarity=0.163 Sum_probs=67.2
Q ss_pred CCCEEEEECCCCchHHHHHhhc-C---CEEEEcCccccHHHHHHHHHHc----------CCCeEEEEecccc-CCCCCCC
Q 006633 218 SIRTAIDTGCGVASWGAYLMSR-N---ILAVSFAPRDTHEAQVQFALER----------GVPALIGVMASIR-LPYPSRA 282 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~-~---v~~vdisp~Dls~a~i~~A~er----------g~~~~~~~~d~~~-Lpfpd~s 282 (637)
..++|||||||.|..+..++++ + ++++++++ .+++.|++. ...+.+...|+.. +...+++
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~-----~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~ 150 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDE-----RVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENS 150 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCH-----HHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCc
Confidence 3569999999999999999886 3 45665544 444444432 2346677777644 2334678
Q ss_pred eeEEEeccccccCCcC---CHHHHHHHHHhcccCCeEEEEEe
Q 006633 283 FDMAHCSRCLIPWGQY---ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 283 FDlV~~s~~L~h~~~~---d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
||+|++...- ++... ....+++.+.+.|+|||.+++..
T Consensus 151 yDvIi~D~~d-p~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 151 FDVIIVDSTD-PVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ccEEEECCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 9999985432 43321 13567899999999999999863
No 155
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.32 E-value=7.9e-07 Score=97.36 Aligned_cols=99 Identities=17% Similarity=0.225 Sum_probs=71.7
Q ss_pred CceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhhcccch-hhccccccCCCCCccceeeeccccccCC
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGLIGT-YQNWCEAMSTYPRTYDLIHADSIFSLYK 554 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl~~~-~~~wce~~~~yp~t~Dl~H~~~lfs~~~ 554 (637)
....|||+|||.|+++..|++. ++ .|+.+|.++.++..+.+|.- +. +.-.+..+...+.+||+|.+.++|....
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~-~l~v~~~~~D~~~l~~~fD~Ivs~~~~ehvg 242 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCA-GLPVEIRLQDYRDLNGQFDRIVSVGMFEHVG 242 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhc-cCeEEEEECchhhcCCCCCEEEEeCchhhCC
Confidence 3568999999999999999865 43 56777777789988887641 10 1111122233367899999988876432
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 555 DRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 555 ~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
.-+.+.+|-++.|+|+|||++++.+
T Consensus 243 -~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 243 -PKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred -hHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 2356789999999999999999963
No 156
>PHA03412 putative methyltransferase; Provisional
Probab=98.31 E-value=3.8e-06 Score=85.77 Aligned_cols=94 Identities=11% Similarity=0.079 Sum_probs=65.7
Q ss_pred CCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~ 293 (637)
..+|||+|||+|.++..++++ ...++.+ |+++.+++.|+++...+.+...|....++ +++||+|+++.-+.
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aV---EID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~ 125 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCV---ELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFG 125 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEE---ECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCC
Confidence 348999999999999988763 2233333 55667777777665567788888766554 56899999987664
Q ss_pred cCCcCC----------HHHHHHHHHhcccCCeE
Q 006633 294 PWGQYA----------DGLYLIEVDRVLRPGGY 316 (637)
Q Consensus 294 h~~~~d----------~~~~L~ei~RvLKPGG~ 316 (637)
.....+ ...++..+.+++++|+.
T Consensus 126 ~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 126 KIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 322111 34578888897777775
No 157
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.31 E-value=3.2e-06 Score=84.22 Aligned_cols=100 Identities=19% Similarity=0.276 Sum_probs=67.4
Q ss_pred EEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEecccc-CC--CCCCCeeEEEeccccc
Q 006633 221 TAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-LP--YPSRAFDMAHCSRCLI 293 (637)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~-Lp--fpd~sFDlV~~s~~L~ 293 (637)
.+||||||.|.+...++.. ++.++++...-+..+..+.......++.+..+|+.. +. ++++++|.|+..+-=
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD- 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD- 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC-
Confidence 8999999999999999887 456666644433333333333334578888888765 32 567999999986644
Q ss_pred cCCcC-------CHHHHHHHHHhcccCCeEEEEEe
Q 006633 294 PWGQY-------ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 294 h~~~~-------d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+|+.. -...++.++.++|+|||.+.+.+
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 66642 23469999999999999999975
No 158
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.31 E-value=1.5e-06 Score=92.61 Aligned_cols=117 Identities=14% Similarity=0.163 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHH-Hhhcccc---hhhccc
Q 006633 456 ALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVI-YERGLIG---TYQNWC 531 (637)
Q Consensus 456 ~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~-~eRgl~~---~~~~wc 531 (637)
..|+..+. |..++..++. -..++|||+|||.|.++.+|+..+. -.|+.+|.+..++..+ ..|.+++ -.+--.
T Consensus 102 ~e~~s~~~-~~~~l~~l~~-~~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~ 177 (314)
T TIGR00452 102 SEWRSDIK-WDRVLPHLSP-LKGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEP 177 (314)
T ss_pred HHHHHHHH-HHHHHHhcCC-CCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEE
Confidence 35665544 3344444444 4457999999999999988887753 2456666665555432 1111111 111111
Q ss_pred cccCCC--CCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 532 EAMSTY--PRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 532 e~~~~y--p~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
..+... +.+||+|-|.+++-. +-+...+|.|+-|+|||||.+|+.
T Consensus 178 ~~ie~lp~~~~FD~V~s~gvL~H---~~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 178 LGIEQLHELYAFDTVFSMGVLYH---RKSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred CCHHHCCCCCCcCEEEEcchhhc---cCCHHHHHHHHHHhcCCCCEEEEE
Confidence 112222 358999999887743 346789999999999999999986
No 159
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.30 E-value=6e-07 Score=90.23 Aligned_cols=96 Identities=22% Similarity=0.351 Sum_probs=68.0
Q ss_pred eeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----ccc---chhh-ccccccCCCCCccceeeeccc
Q 006633 479 RNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GLI---GTYQ-NWCEAMSTYPRTYDLIHADSI 549 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl~---~~~~-~wce~~~~yp~t~Dl~H~~~l 549 (637)
+.|||+|||.|+++..+++. +- .+|..++.+++++..+.++ |+- ..+. |..+ .++|.+||+|++.++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~--~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~--~~~~~~fD~I~~~~~ 76 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPH--LQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAK--DPFPDTYDLVFGFEV 76 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEeccccc--CCCCCCCCEeehHHH
Confidence 36999999999999988764 11 2445555566777766654 442 2222 2211 135689999999888
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
|.... +.+.+|-++.|+|+|||++++.+.
T Consensus 77 l~~~~---~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 77 IHHIK---DKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHhCC---CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 76554 468999999999999999999864
No 160
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.30 E-value=4.8e-07 Score=93.29 Aligned_cols=97 Identities=15% Similarity=0.159 Sum_probs=72.0
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cccc---hhhccccccCCC-CCccceeeeccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIG---TYQNWCEAMSTY-PRTYDLIHADSI 549 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl~~---~~~~wce~~~~y-p~t~Dl~H~~~l 549 (637)
-.+|||+|||.|.++..|++.+. +|+.+|.++.++..+.++ |+.. +++.-.+.+..+ +++||+|.+.++
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 46999999999999999998853 667778887888887765 4422 222111223334 489999999888
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
|.... +...+|-++-|+|||||.+++..
T Consensus 122 l~~~~---~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 122 LEWVA---DPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred HHhhC---CHHHHHHHHHHHcCCCeEEEEEE
Confidence 87543 44789999999999999998863
No 161
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.28 E-value=6.1e-06 Score=91.59 Aligned_cols=114 Identities=10% Similarity=0.040 Sum_probs=70.4
Q ss_pred HHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCCCeEE--EEeccccCCC-
Q 006633 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVPALI--GVMASIRLPY- 278 (637)
Q Consensus 206 ~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~~~~~--~~~d~~~Lpf- 278 (637)
..+...+...++ .+|||+|||+|..+..+++. .++++|+++..+..... .+...+....+ ..++....++
T Consensus 228 ~~~~~~L~~~~g--~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~-n~~r~g~~~~v~~~~~d~~~~~~~ 304 (426)
T TIGR00563 228 QWVATWLAPQNE--ETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYE-NLKRLGLTIKAETKDGDGRGPSQW 304 (426)
T ss_pred HHHHHHhCCCCC--CeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-HHHHcCCCeEEEEecccccccccc
Confidence 345555655554 49999999999999888875 35555554433332222 22233554333 4445444443
Q ss_pred -CCCCeeEEEe----c--cccccCCc-------C-------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 279 -PSRAFDMAHC----S--RCLIPWGQ-------Y-------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 279 -pd~sFDlV~~----s--~~L~h~~~-------~-------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+.++||.|++ + .++.+.++ + ....+|.++.++|||||.|++++.
T Consensus 305 ~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 305 AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 5678999995 2 22322221 0 135799999999999999999965
No 162
>PRK04457 spermidine synthase; Provisional
Probab=98.27 E-value=7.8e-06 Score=85.07 Aligned_cols=96 Identities=10% Similarity=0.118 Sum_probs=65.1
Q ss_pred CCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHc------CCCeEEEEeccccC-CCCCCCeeEEE
Q 006633 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER------GVPALIGVMASIRL-PYPSRAFDMAH 287 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~er------g~~~~~~~~d~~~L-pfpd~sFDlV~ 287 (637)
.++|||||||+|.++..+++. .++++++ +++.++.|++. ...+.+...|.... .-..++||+|+
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEi-----dp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~ 141 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEI-----NPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVIL 141 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEEEC-----CHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEE
Confidence 458999999999999988875 3556655 44555555543 13466777775432 22236799999
Q ss_pred eccccc--cCCcC-CHHHHHHHHHhcccCCeEEEEE
Q 006633 288 CSRCLI--PWGQY-ADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 288 ~s~~L~--h~~~~-d~~~~L~ei~RvLKPGG~Lvls 320 (637)
+.. +. ..+.. ....+++++.++|+|||.+++.
T Consensus 142 ~D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 142 VDG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred EeC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 752 21 11110 2368999999999999999995
No 163
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.26 E-value=1.3e-06 Score=93.48 Aligned_cols=97 Identities=12% Similarity=0.198 Sum_probs=72.3
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhc----ccchhhccc---cccCCCCCccceeeecccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG----LIGTYQNWC---EAMSTYPRTYDLIHADSIF 550 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg----l~~~~~~wc---e~~~~yp~t~Dl~H~~~lf 550 (637)
..+|||+|||.|.++..|+..+. +|..+|.++.++.++.++. +..-+.-.| +.+...+++||+|=|.+++
T Consensus 132 g~~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 45899999999999999987643 6778888888999888662 211111122 3333234799999997777
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 551 SLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 551 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
.... +.+.+|-|+-|+|||||.++|.+
T Consensus 209 eHv~---d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 209 EHVA---NPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred HhcC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 6544 56899999999999999999985
No 164
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.25 E-value=3e-06 Score=94.57 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=68.7
Q ss_pred HHhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCCCCCCCe
Q 006633 210 KLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPYPSRAF 283 (637)
Q Consensus 210 ~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lpfpd~sF 283 (637)
.++...+ +.+|||+|||+|..+..+++. .++++|+++..+..... .+.+.+. ++.+...|...++ ++++|
T Consensus 244 ~~l~~~~--g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~-~~~~~g~~~v~~~~~Da~~~~-~~~~f 319 (445)
T PRK14904 244 LLLNPQP--GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRS-HASALGITIIETIEGDARSFS-PEEQP 319 (445)
T ss_pred HhcCCCC--CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH-HHHHhCCCeEEEEeCcccccc-cCCCC
Confidence 3444334 348999999999988887763 35556554443332222 2223344 3677777776665 56789
Q ss_pred eEEEe----cc--ccc-----cCCc--C-------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 284 DMAHC----SR--CLI-----PWGQ--Y-------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 284 DlV~~----s~--~L~-----h~~~--~-------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|+|++ +. .+. .|.. + ....+|.++.++|||||.+++++.
T Consensus 320 D~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 320 DAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred CEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 99995 21 110 1111 0 123689999999999999999874
No 165
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.24 E-value=2.1e-06 Score=88.32 Aligned_cols=118 Identities=15% Similarity=0.229 Sum_probs=79.2
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc-cchhhccccccCC--CCCccceeeecccccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IGTYQNWCEAMST--YPRTYDLIHADSIFSL 552 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-~~~~~~wce~~~~--yp~t~Dl~H~~~lfs~ 552 (637)
....+|||+|||.|.++..|++.. =.-+|+.+|.++.++..+.++-- +.++. ..+.. .+.+||+|+++..|..
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~~---~d~~~~~~~~~fD~v~~~~~l~~ 105 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLPDCQFVE---ADIASWQPPQALDLIFANASLQW 105 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCCCCeEEE---CchhccCCCCCccEEEEccChhh
Confidence 446899999999999999987641 01356677777788888876621 11221 11112 2379999999887764
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEEeC--H--HHHHHHHHHHhcCCceeE
Q 006633 553 YKDRCEMEDVLLEMDRILRPEGSVIIRDD--V--DILVKIKSITDGMEWEGR 600 (637)
Q Consensus 553 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d~--~--~~~~~~~~~~~~~~W~~~ 600 (637)
.. +...+|-++-|+|||||.+++.-. . .....+++++....|...
T Consensus 106 ~~---d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 154 (258)
T PRK01683 106 LP---DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQN 154 (258)
T ss_pred CC---CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHH
Confidence 43 458899999999999999999631 1 122335556656666544
No 166
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.23 E-value=2.9e-06 Score=89.39 Aligned_cols=115 Identities=11% Similarity=0.098 Sum_probs=79.1
Q ss_pred eeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhc----ccchhhccccccCCC-CCccceeeeccccccC
Q 006633 479 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG----LIGTYQNWCEAMSTY-PRTYDLIHADSIFSLY 553 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg----l~~~~~~wce~~~~y-p~t~Dl~H~~~lfs~~ 553 (637)
.+|||+|||+|.++.++++.+. -.|+.+|.++.++..+.++. +-..+...+.....+ +..||+|.++.+..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~-- 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE-- 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH--
Confidence 6899999999999888877653 35677787777887776653 211122222223333 47899999965432
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCceeEEe
Q 006633 554 KDRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGMEWEGRIA 602 (637)
Q Consensus 554 ~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~W~~~~~ 602 (637)
.+..++-++-|+|||||+++++.- .+....+.+.+++. |+....
T Consensus 237 ----~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 237 ----VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred ----HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeE
Confidence 345788999999999999999864 34556677766665 766543
No 167
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.23 E-value=5e-06 Score=81.08 Aligned_cols=120 Identities=14% Similarity=0.129 Sum_probs=83.1
Q ss_pred eeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc-cchhh-ccccccCCCCCccceeeecccccc
Q 006633 479 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTYQ-NWCEAMSTYPRTYDLIHADSIFSL 552 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-~~~~~-~wce~~~~yp~t~Dl~H~~~lfs~ 552 (637)
.+|||+|||+|.++..|.+..- .|+.+|.++.++..+.++ |+ +-+++ |+.+ ..+.+||+|-++--|-.
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~---~~~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFK---GVRGKFDVILFNPPYLP 94 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccc---ccCCcccEEEECCCCCC
Confidence 4699999999999999988753 566677776777766553 22 12222 3322 23579999988755421
Q ss_pred CC------------------CCcCHHHHHHHHhhcccCCcEEEEEeCHHH-HHHHHHHHhcCCceeEEecc
Q 006633 553 YK------------------DRCEMEDVLLEMDRILRPEGSVIIRDDVDI-LVKIKSITDGMEWEGRIADH 604 (637)
Q Consensus 553 ~~------------------~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~-~~~~~~~~~~~~W~~~~~~~ 604 (637)
.. .+..++.+|-++.|+|+|||.+++.+.... ...+.+.++...++.++...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 165 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAE 165 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEE
Confidence 11 122367889999999999999999865544 66777777888888876543
No 168
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.22 E-value=2.9e-06 Score=88.88 Aligned_cols=104 Identities=19% Similarity=0.256 Sum_probs=70.0
Q ss_pred CCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHH--Hc----CCCeEEEEecc------ccCCCCCCCe
Q 006633 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFAL--ER----GVPALIGVMAS------IRLPYPSRAF 283 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~--er----g~~~~~~~~d~------~~Lpfpd~sF 283 (637)
+..+||+|||-|.-+....+. .++++||+...+.+++.+.-. .+ ..++.|..+|. ..+++++.+|
T Consensus 118 ~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~f 197 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRF 197 (389)
T ss_pred ccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCc
Confidence 347999999999876666555 356666654444333322111 11 12466777663 2345667779
Q ss_pred eEEEeccccccCCcC--CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 284 DMAHCSRCLIPWGQY--ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 284 DlV~~s~~L~h~~~~--d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|+|-|-+|+|.-... ....+|.++.+.|||||+|+-+.|
T Consensus 198 DivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 198 DIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred ceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 999999999543321 456789999999999999999987
No 169
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.22 E-value=2.4e-06 Score=88.83 Aligned_cols=105 Identities=13% Similarity=0.184 Sum_probs=67.8
Q ss_pred HhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHH----HcCC-CeEEEEeccccCCCCC
Q 006633 211 LINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFAL----ERGV-PALIGVMASIRLPYPS 280 (637)
Q Consensus 211 lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~----erg~-~~~~~~~d~~~Lpfpd 280 (637)
.+...++ .+|||+|||+|..+..+++. .++++|+ ++.+++.++ ..+. ++.+...|...++...
T Consensus 66 ~l~~~~g--~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~-----~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~ 138 (264)
T TIGR00446 66 ALEPDPP--ERVLDMAAAPGGKTTQISALMKNEGAIVANEF-----SKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAV 138 (264)
T ss_pred HhCCCCc--CEEEEECCCchHHHHHHHHHcCCCCEEEEEcC-----CHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhc
Confidence 4444444 48999999999999888764 2455555 444443333 2243 4667777776666555
Q ss_pred CCeeEEEecc------cccc-------CCcC-------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 281 RAFDMAHCSR------CLIP-------WGQY-------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 281 ~sFDlV~~s~------~L~h-------~~~~-------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+.||.|++.. ++.+ +.++ ....+|.++.++|||||+++.++.
T Consensus 139 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 139 PKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred cCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 6799999621 1111 1111 123589999999999999999865
No 170
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.22 E-value=7.1e-06 Score=91.53 Aligned_cols=113 Identities=18% Similarity=0.224 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHH----cCC-CeEEEEecccc
Q 006633 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALE----RGV-PALIGVMASIR 275 (637)
Q Consensus 201 ~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~e----rg~-~~~~~~~d~~~ 275 (637)
.+..++.+.+++...++ .+|||+|||+|.++..|++....++.+ |+++.+++.|++ .+. ++.+..+|...
T Consensus 282 ~e~l~~~vl~~l~~~~~--~~VLDlgcGtG~~sl~la~~~~~V~gv---D~s~~al~~A~~n~~~~~~~~v~~~~~d~~~ 356 (443)
T PRK13168 282 NQKMVARALEWLDPQPG--DRVLDLFCGLGNFTLPLARQAAEVVGV---EGVEAMVERARENARRNGLDNVTFYHANLEE 356 (443)
T ss_pred HHHHHHHHHHHhcCCCC--CEEEEEeccCCHHHHHHHHhCCEEEEE---eCCHHHHHHHHHHHHHcCCCceEEEEeChHH
Confidence 34556666666654443 489999999999999999875444444 445555554443 233 57788877643
Q ss_pred ----CCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCC
Q 006633 276 ----LPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPV 324 (637)
Q Consensus 276 ----Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~ 324 (637)
+++.+++||+|++.. +.. .....+..+.+ ++|++.++++..|.
T Consensus 357 ~l~~~~~~~~~fD~Vi~dP---Pr~--g~~~~~~~l~~-~~~~~ivyvSCnp~ 403 (443)
T PRK13168 357 DFTDQPWALGGFDKVLLDP---PRA--GAAEVMQALAK-LGPKRIVYVSCNPA 403 (443)
T ss_pred hhhhhhhhcCCCCEEEECc---CCc--ChHHHHHHHHh-cCCCeEEEEEeChH
Confidence 345567899999875 333 23445655555 69999999997543
No 171
>PRK08317 hypothetical protein; Provisional
Probab=98.21 E-value=2.8e-06 Score=84.94 Aligned_cols=102 Identities=23% Similarity=0.296 Sum_probs=70.5
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh--cccchhhccccccC--CCC-Cccceeeecccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER--GLIGTYQNWCEAMS--TYP-RTYDLIHADSIF 550 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR--gl~~~~~~wce~~~--~yp-~t~Dl~H~~~lf 550 (637)
....+|||+|||.|.++..+++.--=.-+++.+|.++.++..+.++ +.....+-.+..+. .++ .+||+||+..+|
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~ 97 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVL 97 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechh
Confidence 3467899999999999998876410012566667777788888877 22111111111111 244 799999998887
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 551 SLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 551 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
.... +.+.+|-++-|+|+|||++++.+
T Consensus 98 ~~~~---~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 98 QHLE---DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred hccC---CHHHHHHHHHHHhcCCcEEEEEe
Confidence 6554 46889999999999999999864
No 172
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.21 E-value=7.1e-06 Score=91.28 Aligned_cols=112 Identities=20% Similarity=0.211 Sum_probs=70.4
Q ss_pred HHHHhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCC-CCC
Q 006633 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP-YPS 280 (637)
Q Consensus 208 L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lp-fpd 280 (637)
+..++...++ .+|||+|||+|..+..+++. .++++|+++..+..... .+.+.+. .+.+...|...++ +.+
T Consensus 229 ~~~~l~~~~g--~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~-n~~r~g~~~v~~~~~Da~~l~~~~~ 305 (431)
T PRK14903 229 VPLLMELEPG--LRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEK-HAKRLKLSSIEIKIADAERLTEYVQ 305 (431)
T ss_pred HHHHhCCCCC--CEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHH-HHHHcCCCeEEEEECchhhhhhhhh
Confidence 4444444444 49999999999998888764 25555554433332222 2223344 3677777877765 456
Q ss_pred CCeeEEEec-cc--c--ccCCc--------C-------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 281 RAFDMAHCS-RC--L--IPWGQ--------Y-------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 281 ~sFDlV~~s-~~--L--~h~~~--------~-------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++||.|++. .| + ..-.+ + ....+|.++.+.|||||.+++++.
T Consensus 306 ~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 367 (431)
T PRK14903 306 DTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC 367 (431)
T ss_pred ccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 789999962 11 1 11111 0 224679999999999999999875
No 173
>PRK05785 hypothetical protein; Provisional
Probab=98.19 E-value=2.8e-06 Score=86.42 Aligned_cols=106 Identities=15% Similarity=0.200 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhccccccC
Q 006633 456 ALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMS 535 (637)
Q Consensus 456 ~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~ 535 (637)
..|++.+-.... ..+.. ..+|||+|||+|-++.+|.+.. --+|+.+|.++++|..+.+++ ..++.-.+.+
T Consensus 35 ~~wr~~~~~~l~--~~~~~---~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~l- 104 (226)
T PRK05785 35 VRWRAELVKTIL--KYCGR---PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD--DKVVGSFEAL- 104 (226)
T ss_pred HHHHHHHHHHHH--HhcCC---CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--ceEEechhhC-
Confidence 568776543221 11122 4689999999999999998772 237888899999999998874 2233333444
Q ss_pred CCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCc
Q 006633 536 TYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEG 574 (637)
Q Consensus 536 ~yp-~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG 574 (637)
+|| ++||+|-+...+ ++--+++..|-||.|||||.+
T Consensus 105 p~~d~sfD~v~~~~~l---~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 105 PFRDKSFDVVMSSFAL---HASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CCCCCCEEEEEecChh---hccCCHHHHHHHHHHHhcCce
Confidence 455 899999985544 234577999999999999954
No 174
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.17 E-value=9.2e-06 Score=81.08 Aligned_cols=101 Identities=21% Similarity=0.305 Sum_probs=63.2
Q ss_pred CCCEEEEECCCCc----hHHHHHhhc-------CCEEEEcCccccHHHHHHHHHHc--------C---------------
Q 006633 218 SIRTAIDTGCGVA----SWGAYLMSR-------NILAVSFAPRDTHEAQVQFALER--------G--------------- 263 (637)
Q Consensus 218 ~~r~VLDIGCGtG----~~a~~La~~-------~v~~vdisp~Dls~a~i~~A~er--------g--------------- 263 (637)
..-+|+..||++| +++..|.+. .+.+++. |++...++.|++. +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~at---Di~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~ 107 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILAT---DISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDG 107 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEE---ES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-C
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEE---ECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCC
Confidence 4568999999999 566666661 1333333 6666777666531 1
Q ss_pred ----------CCeEEEEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 264 ----------VPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 264 ----------~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
..+.|...+....+.+.+.||+|+|..+++++.++....+++.+.+.|+|||+|++..
T Consensus 108 ~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 108 GGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp CCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred CceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 1256666666663445678999999999999997677899999999999999999974
No 175
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.17 E-value=1.3e-05 Score=81.77 Aligned_cols=99 Identities=16% Similarity=0.268 Sum_probs=75.4
Q ss_pred EEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCC---CCCCCeeEEEecccc
Q 006633 221 TAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP---YPSRAFDMAHCSRCL 292 (637)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lp---fpd~sFDlV~~s~~L 292 (637)
.+||||||.|.+...+|++ +++++++...-+ ...++.+.+.++ ++.+...|+..+- +++++.|-|+.++.=
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v-~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGV-AKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHH-HHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 8999999999999999988 566666644322 234455667788 8888888865542 456699999987754
Q ss_pred ccCCcC-------CHHHHHHHHHhcccCCeEEEEEe
Q 006633 293 IPWGQY-------ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 293 ~h~~~~-------d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+|+.. -...+++.+.++|+|||.|.+.+
T Consensus 130 -PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 130 -PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred -CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 78753 23369999999999999999985
No 176
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.16 E-value=2.9e-05 Score=77.67 Aligned_cols=119 Identities=8% Similarity=-0.012 Sum_probs=70.2
Q ss_pred cccHHHHHHHHHHHhcc-cCCCCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEec
Q 006633 198 PRGADAYIDDIGKLINL-KDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGV-PALIGVMA 272 (637)
Q Consensus 198 ~~g~~~~i~~L~~lL~~-~~g~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d 272 (637)
....+...+.+.+.+.. .. +.+|||+|||+|.++..++.+ .+++++.++.....+.. .+...+. ++.+...|
T Consensus 34 Rp~~d~v~e~l~~~l~~~~~--~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~-Nl~~~~~~~v~~~~~D 110 (199)
T PRK10909 34 RPTTDRVRETLFNWLAPVIV--DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIK-NLATLKAGNARVVNTN 110 (199)
T ss_pred CcCCHHHHHHHHHHHhhhcC--CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHH-HHHHhCCCcEEEEEch
Confidence 44456665666666542 23 348999999999999875554 35555554322221111 1222233 46677776
Q ss_pred ccc-CCCCCCCeeEEEeccccccCCcCCHHHHHHHHHh--cccCCeEEEEEeC
Q 006633 273 SIR-LPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDR--VLRPGGYWILSGP 322 (637)
Q Consensus 273 ~~~-Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~R--vLKPGG~Lvls~p 322 (637)
... ++.....||+|++..-+ .......++..+.. +|+|+|.+++..+
T Consensus 111 ~~~~l~~~~~~fDlV~~DPPy---~~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 111 ALSFLAQPGTPHNVVFVDPPF---RKGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred HHHHHhhcCCCceEEEECCCC---CCChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 544 22234579999998743 22134455555554 4899999999865
No 177
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.16 E-value=1.7e-06 Score=88.14 Aligned_cols=103 Identities=8% Similarity=0.113 Sum_probs=69.4
Q ss_pred ceeEeeecccchhhhhhhcCCCeE-EEEeccCCCCcchhHHHHhh----cccchhhccccccCCCC-Cccceeeeccccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLW-VMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTYP-RTYDLIHADSIFS 551 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~-~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wce~~~~yp-~t~Dl~H~~~lfs 551 (637)
..+|||+|||.|.+...|+++-.. -.+++.+|.+++++..+.++ +...-++--+..+..+| ..+|++.+..++.
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~l~ 133 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQ 133 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecchh
Confidence 568999999999999888764100 13566777777888888765 22111111123344444 5689988876665
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 552 LYKDRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 552 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
.... -+...+|-++.|+|+|||.++++|.
T Consensus 134 ~~~~-~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 134 FLPP-EDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred hCCH-HHHHHHHHHHHHhcCCCeEEEEeec
Confidence 4332 1356899999999999999999974
No 178
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.16 E-value=5.1e-06 Score=92.65 Aligned_cols=112 Identities=13% Similarity=0.165 Sum_probs=69.2
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCC--C
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP--Y 278 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lp--f 278 (637)
.+...+...++ .+|||+|||+|..+..+++. .++++|+++..+.... +.+.+.+. ++.+...|...++ +
T Consensus 241 lv~~~l~~~~g--~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~-~n~~~~g~~~v~~~~~D~~~~~~~~ 317 (444)
T PRK14902 241 LVAPALDPKGG--DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIE-ENAKRLGLTNIETKALDARKVHEKF 317 (444)
T ss_pred HHHHHhCCCCC--CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCCcccccchh
Confidence 44555554444 48999999999999988875 2555555443322222 12223343 3677777776653 3
Q ss_pred CCCCeeEEEeccc------ccc-----CCc--CC-------HHHHHHHHHhcccCCeEEEEEeC
Q 006633 279 PSRAFDMAHCSRC------LIP-----WGQ--YA-------DGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 279 pd~sFDlV~~s~~------L~h-----~~~--~d-------~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+ ++||+|++..- +.+ |.. .+ ...++.++.++|||||.++.++.
T Consensus 318 ~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 318 A-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred c-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 3 78999997421 111 110 01 23579999999999999998754
No 179
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.14 E-value=6.3e-06 Score=81.64 Aligned_cols=141 Identities=20% Similarity=0.310 Sum_probs=89.7
Q ss_pred cCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhh-ccc-cccCCC-C-Cccceeeec
Q 006633 472 LAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQ-NWC-EAMSTY-P-RTYDLIHAD 547 (637)
Q Consensus 472 l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~-~wc-e~~~~y-p-~t~Dl~H~~ 547 (637)
|.. .++++++++|||.|-|-+.|+.+ .-.++.+|.++.-+..+.+|=- +.-| .|- ..++.+ | .+|||||+.
T Consensus 39 Lp~-~ry~~alEvGCs~G~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~-~~~~V~~~~~dvp~~~P~~~FDLIV~S 113 (201)
T PF05401_consen 39 LPR-RRYRRALEVGCSIGVLTERLAPR---CDRLLAVDISPRALARARERLA-GLPHVEWIQADVPEFWPEGRFDLIVLS 113 (201)
T ss_dssp HTT-SSEEEEEEE--TTSHHHHHHGGG---EEEEEEEES-HHHHHHHHHHTT-T-SSEEEEES-TTT---SS-EEEEEEE
T ss_pred cCc-cccceeEecCCCccHHHHHHHHh---hCceEEEeCCHHHHHHHHHhcC-CCCCeEEEECcCCCCCCCCCeeEEEEe
Confidence 556 89999999999999999999987 2345555665566777766532 2112 333 233333 5 999999999
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHH----------HHHHHHHHHhcCCceeEEeccCCCCCCcceEEEE
Q 006633 548 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVD----------ILVKIKSITDGMEWEGRIADHENGPRQREKILFA 617 (637)
Q Consensus 548 ~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~----------~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~ 617 (637)
.|+-...+.-++..++-.+...|+|||.+|+-.-.+ --+.|.++++..-=++.-..-..++ ..|.-|++
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 192 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECRGGS-PNEDCLLA 192 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE-SS-TTSEEEEE
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEEcCCC-CCCceEee
Confidence 999888777678889999999999999999964322 2255666655555555443333233 45666665
Q ss_pred E
Q 006633 618 N 618 (637)
Q Consensus 618 ~ 618 (637)
+
T Consensus 193 ~ 193 (201)
T PF05401_consen 193 R 193 (201)
T ss_dssp E
T ss_pred e
Confidence 3
No 180
>PRK14968 putative methyltransferase; Provisional
Probab=98.12 E-value=8.4e-06 Score=79.08 Aligned_cols=136 Identities=15% Similarity=0.175 Sum_probs=87.0
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----c-----ccchhhccccccCCCC-Cccceeeec
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----G-----LIGTYQNWCEAMSTYP-RTYDLIHAD 547 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----g-----l~~~~~~wce~~~~yp-~t~Dl~H~~ 547 (637)
..+|||+|||.|.++..|++++ -+|..+|.++.++..+.++ | +.-..+|+.+ .++ ..||+|=++
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~d~vi~n 97 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE---PFRGDKFDVILFN 97 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc---cccccCceEEEEC
Confidence 4589999999999999998874 4667777776777776432 2 2222335444 334 589998665
Q ss_pred cccccCC------------------CCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCceeEEeccCCCC
Q 006633 548 SIFSLYK------------------DRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGMEWEGRIADHENGP 608 (637)
Q Consensus 548 ~lfs~~~------------------~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~W~~~~~~~e~~~ 608 (637)
.-|.... ....++.++-++.|+|+|||.+++-.. ......+.+.+....|+......+.-.
T Consensus 98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 177 (188)
T PRK14968 98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEEKFP 177 (188)
T ss_pred CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeecccC
Confidence 5442210 122356789999999999999887533 223567778888888876654333333
Q ss_pred CCcceEEEEEe
Q 006633 609 RQREKILFANK 619 (637)
Q Consensus 609 ~~~~~~l~~~K 619 (637)
+..-.+++.+|
T Consensus 178 ~~~~~~~~~~~ 188 (188)
T PRK14968 178 FEELIVLELVK 188 (188)
T ss_pred CceEEEEEEeC
Confidence 33334444443
No 181
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.12 E-value=4.5e-05 Score=77.85 Aligned_cols=126 Identities=16% Similarity=0.117 Sum_probs=71.0
Q ss_pred CCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCCCeE-EEEeccccC-----CCCCCCeeEEEe
Q 006633 218 SIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGVPAL-IGVMASIRL-----PYPSRAFDMAHC 288 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~~~~-~~~~d~~~L-----pfpd~sFDlV~~ 288 (637)
.+.++||+|||+|.|+..|++++ ++++|+ +..|+.........+. +...+...+ +..-..||++++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~-----~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~Dvsfi 149 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDV-----GYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFI 149 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeC-----CHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEe
Confidence 34589999999999999999984 455555 4444443333333321 222233322 212236787777
Q ss_pred ccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCcccc----ccCCCCchhhhHHhHhhHHHHHHHhceeee
Q 006633 289 SRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESH----WKGWNRTTEDLKSEQNGIETIARSLCWKKL 359 (637)
Q Consensus 289 s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~----~~~w~~t~e~l~~~~~~ie~la~~l~w~~v 359 (637)
+..+ .+..+.+.|+| |.+++-.-|.--..+ .++--+.........+.+...+..++|...
T Consensus 150 S~~~----------~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (228)
T TIGR00478 150 SLIS----------ILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEK 213 (228)
T ss_pred ehHh----------HHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEe
Confidence 6544 57889999999 777765422211111 112223344444455556666666666543
No 182
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.12 E-value=1.3e-05 Score=82.67 Aligned_cols=127 Identities=15% Similarity=0.148 Sum_probs=83.3
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhccc-chhhccccccCCCC--CccceeeeccccccCC
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLI-GTYQNWCEAMSTYP--RTYDLIHADSIFSLYK 554 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~-~~~~~wce~~~~yp--~t~Dl~H~~~lfs~~~ 554 (637)
..+|||+|||+|..+.++.+.+. -.|+.+|.++.++..+.++--. ++ . ..+.... ..||+|.|+-+.
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~--~~v~giDis~~~l~~A~~n~~~~~~-~---~~~~~~~~~~~fD~Vvani~~---- 189 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGA--KKVLAVDIDPQAVEAARENAELNGV-E---LNVYLPQGDLKADVIVANILA---- 189 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCC-C---ceEEEccCCCCcCEEEEcCcH----
Confidence 56899999999999888877643 1366677776777777665211 11 0 1111111 279999885321
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCceeEEeccCCCCCCcceEEEEEec
Q 006633 555 DRCEMEDVLLEMDRILRPEGSVIIRDDV-DILVKIKSITDGMEWEGRIADHENGPRQREKILFANKK 620 (637)
Q Consensus 555 ~~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K~ 620 (637)
-.+..++-++.|+|||||++|+++-. +....+.+.++...+.......+ +.-..++++|+
T Consensus 190 --~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~----~~W~~~~~~~~ 250 (250)
T PRK00517 190 --NPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLER----GEWVALVGKKK 250 (250)
T ss_pred --HHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEe----CCEEEEEEEeC
Confidence 12457788999999999999999743 45677788888888887654433 23445566553
No 183
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.11 E-value=2.7e-06 Score=87.54 Aligned_cols=101 Identities=8% Similarity=0.130 Sum_probs=69.9
Q ss_pred ceeEeeecccchhhhhhhcC---CCeEEEEeccCCCCcchhHHHHhh----cccchhhccccccCCCC-Cccceeeeccc
Q 006633 478 YRNLLDMNAYLGGFAAALVD---DPLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTYP-RTYDLIHADSI 549 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~---~~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wce~~~~yp-~t~Dl~H~~~l 549 (637)
..+|||+|||+|..+.+|++ .+- ..|+.+|.++.++..+.++ |+..-+.-.+..+...| ..||+|-++.+
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~--~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDN--CKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 45799999999999887765 232 3567778887899888776 33211111233444444 46898777655
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
+.... .-....++-|+-|+|+|||.+++.|.
T Consensus 135 l~~l~-~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 135 LQFLE-PSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHhCC-HHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 54433 23457899999999999999999873
No 184
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=5.9e-05 Score=79.34 Aligned_cols=94 Identities=23% Similarity=0.312 Sum_probs=60.6
Q ss_pred EEEEECCCCchHHHHHhhcC----CEEEEcCccccHHHHHHHHH----HcCC-CeEEEEeccccCCCCCCCeeEEEeccc
Q 006633 221 TAIDTGCGVASWGAYLMSRN----ILAVSFAPRDTHEAQVQFAL----ERGV-PALIGVMASIRLPYPSRAFDMAHCSRC 291 (637)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~----v~~vdisp~Dls~a~i~~A~----erg~-~~~~~~~d~~~Lpfpd~sFDlV~~s~~ 291 (637)
+|||+|||+|..+..++... |+++|++ ..+++.|+ ..+. +..+...+ .-.+.. +.||+|+|+.-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis-----~~Al~~A~~Na~~~~l~~~~~~~~d-lf~~~~-~~fDlIVsNPP 185 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDIS-----PDALALARENAERNGLVRVLVVQSD-LFEPLR-GKFDLIVSNPP 185 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECC-----HHHHHHHHHHHHHcCCccEEEEeee-cccccC-CceeEEEeCCC
Confidence 79999999999999999873 4555554 44444443 3343 23333322 111233 48999999875
Q ss_pred cccCC-----cC------------------CHHHHHHHHHhcccCCeEEEEEe
Q 006633 292 LIPWG-----QY------------------ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 292 L~h~~-----~~------------------d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
..+-. ++ ....++.++.+.|+|||.+++..
T Consensus 186 Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 186 YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence 43332 00 12257888999999999999974
No 185
>PRK01581 speE spermidine synthase; Validated
Probab=98.10 E-value=1.7e-05 Score=85.75 Aligned_cols=99 Identities=12% Similarity=0.083 Sum_probs=67.9
Q ss_pred CCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHH------------cCCCeEEEEecccc-CCCC
Q 006633 217 GSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALE------------RGVPALIGVMASIR-LPYP 279 (637)
Q Consensus 217 g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~e------------rg~~~~~~~~d~~~-Lpfp 279 (637)
...++||+||||+|..++.+++. .++++++ ++++++.|++ ....+.+...|+.. +.-.
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEI-----DpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~ 223 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDL-----DGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP 223 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeC-----CHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc
Confidence 34569999999999999888876 2455555 5566666664 12456777777654 3344
Q ss_pred CCCeeEEEeccccccCCc----CCHHHHHHHHHhcccCCeEEEEEe
Q 006633 280 SRAFDMAHCSRCLIPWGQ----YADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 280 d~sFDlV~~s~~L~h~~~----~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
.+.||+|++... .+... -....+++.+.+.|+|||.|++..
T Consensus 224 ~~~YDVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 224 SSLYDVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred CCCccEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 578999998632 12110 023568999999999999998863
No 186
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=4.4e-05 Score=78.27 Aligned_cols=104 Identities=19% Similarity=0.231 Sum_probs=75.2
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHc----CC-C-eEEEEeccccCC
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV-P-ALIGVMASIRLP 277 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~er----g~-~-~~~~~~d~~~Lp 277 (637)
.|...+.+.+|+ +|||.|.|+|.++++|+.. .-.++.+ +..+...+.|+++ +. + +.+...|....-
T Consensus 85 ~I~~~~gi~pg~--rVlEAGtGSG~lt~~La~~vg~~G~v~ty---E~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~ 159 (256)
T COG2519 85 YIVARLGISPGS--RVLEAGTGSGALTAYLARAVGPEGHVTTY---EIREDFAKTARENLSEFGLGDRVTLKLGDVREGI 159 (256)
T ss_pred HHHHHcCCCCCC--EEEEcccCchHHHHHHHHhhCCCceEEEE---EecHHHHHHHHHHHHHhccccceEEEeccccccc
Confidence 466666777776 9999999999999999964 1223334 4455555555544 22 2 556666666655
Q ss_pred CCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCC
Q 006633 278 YPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPP 323 (637)
Q Consensus 278 fpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp 323 (637)
+++ .||.|+. ..+ ++-.+++.+..+|+|||.+++..|.
T Consensus 160 ~~~-~vDav~L-----Dmp--~PW~~le~~~~~Lkpgg~~~~y~P~ 197 (256)
T COG2519 160 DEE-DVDAVFL-----DLP--DPWNVLEHVSDALKPGGVVVVYSPT 197 (256)
T ss_pred ccc-ccCEEEE-----cCC--ChHHHHHHHHHHhCCCcEEEEEcCC
Confidence 554 8999986 455 7888999999999999999998873
No 187
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.09 E-value=6.2e-06 Score=82.37 Aligned_cols=123 Identities=16% Similarity=0.120 Sum_probs=83.9
Q ss_pred CceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cc--cchhh-ccccccCC-C-CCccceeee
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMST-Y-PRTYDLIHA 546 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~-~wce~~~~-y-p~t~Dl~H~ 546 (637)
.-.+|||+|||+|.+...|++. +- .+|+.+|.++.++..+.++ |+ +-+++ |+.+.+.. + +.+||+|-+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~--~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPD--INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCC--ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEE
Confidence 3578999999999999998764 21 3566777777777777653 33 22233 33233432 5 488999876
Q ss_pred ccccc-----cCCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHhcCCceeEE
Q 006633 547 DSIFS-----LYKDRCEMEDVLLEMDRILRPEGSVIIR-DDVDILVKIKSITDGMEWEGRI 601 (637)
Q Consensus 547 ~~lfs-----~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~~~~W~~~~ 601 (637)
+.... ....+...+.+|-++.|+|+|||.++|. +.......+.+.+..-.|.+.+
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~ 178 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVS 178 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcccccc
Confidence 42221 1122334688999999999999999996 6667777888877777787763
No 188
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.09 E-value=4.7e-05 Score=79.36 Aligned_cols=155 Identities=15% Similarity=0.204 Sum_probs=98.2
Q ss_pred HHHHHHHHHHhcc--cCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHH---HHHHHc----C---------
Q 006633 202 DAYIDDIGKLINL--KDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQV---QFALER----G--------- 263 (637)
Q Consensus 202 ~~~i~~L~~lL~~--~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i---~~A~er----g--------- 263 (637)
...++.|.+.++. ......+||--|||.|+++-.++.+|..+-+. +.+--|+ ++.+.. +
T Consensus 38 ~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gn---E~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~ 114 (270)
T PF07942_consen 38 SPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGN---EFSYFMLLASNFILNHCSQPNQFTIYPFVH 114 (270)
T ss_pred HHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEE---EchHHHHHHHHHHHcccCCCCcEEEeccee
Confidence 4455666666653 22334589999999999999999997655444 4444442 222211 0
Q ss_pred -----------------------------CCeEEEEeccccCCCCC---CCeeEEEeccccccCCcCCHHHHHHHHHhcc
Q 006633 264 -----------------------------VPALIGVMASIRLPYPS---RAFDMAHCSRCLIPWGQYADGLYLIEVDRVL 311 (637)
Q Consensus 264 -----------------------------~~~~~~~~d~~~Lpfpd---~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvL 311 (637)
.+.....+|......++ ++||.|++.+.+ .-.. +.-.+++.|.++|
T Consensus 115 ~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFI-DTA~-Ni~~Yi~tI~~lL 192 (270)
T PF07942_consen 115 SFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFI-DTAE-NIIEYIETIEHLL 192 (270)
T ss_pred cccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEe-echH-HHHHHHHHHHHHh
Confidence 01222233333333233 689999988644 5554 7889999999999
Q ss_pred cCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeecccC
Q 006633 312 RPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQKK 363 (637)
Q Consensus 312 KPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~~~~ 363 (637)
||||+++=.+|-........ ......++-.++++..++++++|+.+.+..
T Consensus 193 kpgG~WIN~GPLlyh~~~~~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 193 KPGGYWINFGPLLYHFEPMS--IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred ccCCEEEecCCccccCCCCC--CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 99999888888443222110 112223566688899999999998876543
No 189
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.09 E-value=1.9e-05 Score=82.40 Aligned_cols=98 Identities=10% Similarity=0.146 Sum_probs=64.0
Q ss_pred CCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHc---------CCCeEEEEecccc-CCCCCCCe
Q 006633 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER---------GVPALIGVMASIR-LPYPSRAF 283 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~er---------g~~~~~~~~d~~~-Lpfpd~sF 283 (637)
..++||+||||+|.++..++++ .++++++++ ..++.+++. ...+.+...|... +.-..++|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~-----~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~y 146 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDE-----KVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTF 146 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCH-----HHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCc
Confidence 3459999999999999888776 356666654 333333332 1234555555432 12225789
Q ss_pred eEEEeccccccCCcC-C--HHHHHHHHHhcccCCeEEEEEe
Q 006633 284 DMAHCSRCLIPWGQY-A--DGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 284 DlV~~s~~L~h~~~~-d--~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
|+|++.... +.... . ...+++.+.+.|+|||.+++..
T Consensus 147 DvIi~D~~~-~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 147 DVIIVDSTD-PVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred cEEEEeCCC-CCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 999986542 22220 1 4578899999999999999874
No 190
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.07 E-value=8.5e-06 Score=81.72 Aligned_cols=98 Identities=16% Similarity=0.227 Sum_probs=68.3
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc--cchhh-ccccccCCCCCccceeeeccccccCC
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL--IGTYQ-NWCEAMSTYPRTYDLIHADSIFSLYK 554 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl--~~~~~-~wce~~~~yp~t~Dl~H~~~lfs~~~ 554 (637)
..+|||+|||.|.+..+|++..- ...+..+|.++.++..+.++.- +-.+. |. +.++..+.+||+|.+..++...
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~vi~~~~l~~~- 111 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDA-EKLPLEDSSFDLIVSNLALQWC- 111 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecch-hhCCCCCCceeEEEEhhhhhhc-
Confidence 36799999999999999987531 1224556666677777766542 11111 21 2333334899999998776533
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 555 DRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 555 ~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
.+...+|-++.|+|+|||.+++..
T Consensus 112 --~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 112 --DDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred --cCHHHHHHHHHHHcCCCcEEEEEe
Confidence 356899999999999999999974
No 191
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.04 E-value=2.5e-05 Score=82.28 Aligned_cols=99 Identities=12% Similarity=0.126 Sum_probs=68.8
Q ss_pred CEEEEECCCCc----hHHHHHhhc------CCEEEEcCccccHHHHHHHHHHc--------C------------------
Q 006633 220 RTAIDTGCGVA----SWGAYLMSR------NILAVSFAPRDTHEAQVQFALER--------G------------------ 263 (637)
Q Consensus 220 r~VLDIGCGtG----~~a~~La~~------~v~~vdisp~Dls~a~i~~A~er--------g------------------ 263 (637)
-+|+..||.+| +++..|.+. ++.+++. |++...++.|++. +
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~at---DIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~ 193 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFAS---DIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHE 193 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEE---ECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCC
Confidence 58999999999 555555553 2223322 5555566555432 0
Q ss_pred ----------CCeEEEEeccccCCCC-CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 264 ----------VPALIGVMASIRLPYP-SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 264 ----------~~~~~~~~d~~~Lpfp-d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
..+.|...+....+++ .+.||+|+|..+++|+.++....++..+.+.|+|||+|++..
T Consensus 194 ~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 194 GLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred ceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 0134555555554443 578999999999999987678899999999999999987763
No 192
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.03 E-value=9e-06 Score=84.71 Aligned_cols=129 Identities=13% Similarity=0.205 Sum_probs=85.5
Q ss_pred hcchhhHHHHHHHHHHHHHh-hhccCCCCCceeEeeecccchh----hhhhhcCC----CeEEEEeccCCCCcchhHHHH
Q 006633 449 EMFREDTALWKKRVTYYKSV-DYQLAQPGRYRNLLDMNAYLGG----FAAALVDD----PLWVMNTVPVEAKINTLGVIY 519 (637)
Q Consensus 449 ~~f~~d~~~w~~~v~~y~~~-~~~l~~~~~~r~vlD~~~g~gg----faa~l~~~----~v~~mnv~~~~~~~~~l~~~~ 519 (637)
..|-.|...|..-.+..... +..... ++.-+|+|+|||+|- .|-.|.+. .-|...|+.+|.++.+|..+.
T Consensus 71 T~FfR~~~~~~~l~~~vlp~l~~~~~~-~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar 149 (264)
T smart00138 71 TRFFRESKHFEALEEKVLPLLIASRRH-GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKAR 149 (264)
T ss_pred CcccCCcHHHHHHHHHHhHHHHHhcCC-CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHH
Confidence 34777778888765543322 221122 345789999999994 55555442 124568899999988998887
Q ss_pred hhcccc-----------------------------------hhhccccccCCCC-CccceeeeccccccCCCCcCHHHHH
Q 006633 520 ERGLIG-----------------------------------TYQNWCEAMSTYP-RTYDLIHADSIFSLYKDRCEMEDVL 563 (637)
Q Consensus 520 eRgl~~-----------------------------------~~~~wce~~~~yp-~t~Dl~H~~~lfs~~~~~c~~~~~l 563 (637)
+ |+.+ ..||..+ ..+| +.||+|.|..+|.... .-....++
T Consensus 150 ~-~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~--~~~~~~~fD~I~crnvl~yf~-~~~~~~~l 225 (264)
T smart00138 150 A-GIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLA--ESPPLGDFDLIFCRNVLIYFD-EPTQRKLL 225 (264)
T ss_pred c-CCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCC--CCCccCCCCEEEechhHHhCC-HHHHHHHH
Confidence 5 3211 1122222 1233 8999999988876543 23456899
Q ss_pred HHHhhcccCCcEEEEEeCH
Q 006633 564 LEMDRILRPEGSVIIRDDV 582 (637)
Q Consensus 564 ~e~dRiLrPgG~~i~~d~~ 582 (637)
-++-|+|+|||++++....
T Consensus 226 ~~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 226 NRFAEALKPGGYLFLGHSE 244 (264)
T ss_pred HHHHHHhCCCeEEEEECcc
Confidence 9999999999999997654
No 193
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.99 E-value=4e-05 Score=81.76 Aligned_cols=112 Identities=13% Similarity=0.097 Sum_probs=69.9
Q ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHH----HcCC-CeEEEEeccccCC
Q 006633 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFAL----ERGV-PALIGVMASIRLP 277 (637)
Q Consensus 203 ~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~----erg~-~~~~~~~d~~~Lp 277 (637)
.+++.+.+++.... +.+|||+|||+|.++..|++++..++++ |+++.+++.|+ ..+. ++.+..+|...+.
T Consensus 160 ~l~~~v~~~l~~~~--~~~VLDl~cG~G~~sl~la~~~~~V~gv---D~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~ 234 (315)
T PRK03522 160 QLYATARDWVRELP--PRSMWDLFCGVGGFGLHCATPGMQLTGI---EISAEAIACAKQSAAELGLTNVQFQALDSTQFA 234 (315)
T ss_pred HHHHHHHHHHHhcC--CCEEEEccCCCCHHHHHHHhcCCEEEEE---eCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHH
Confidence 34444555554223 3489999999999999999885444444 44444544443 3344 4788888876654
Q ss_pred C-CCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCC
Q 006633 278 Y-PSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPV 324 (637)
Q Consensus 278 f-pd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~ 324 (637)
. ..+.||+|++..-. . .....+.++...++|++.++++..|.
T Consensus 235 ~~~~~~~D~Vv~dPPr---~--G~~~~~~~~l~~~~~~~ivyvsc~p~ 277 (315)
T PRK03522 235 TAQGEVPDLVLVNPPR---R--GIGKELCDYLSQMAPRFILYSSCNAQ 277 (315)
T ss_pred HhcCCCCeEEEECCCC---C--CccHHHHHHHHHcCCCeEEEEECCcc
Confidence 2 34579999987522 2 12223334445578999999886544
No 194
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=97.98 E-value=7.8e-06 Score=84.91 Aligned_cols=97 Identities=21% Similarity=0.226 Sum_probs=64.7
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cc--cchhh-ccccccCCCC-Cccceeeecc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTYP-RTYDLIHADS 548 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~-~wce~~~~yp-~t~Dl~H~~~ 548 (637)
..+|||+|||.|..+..+++. +- ...|+.+|.++.++..+.++ |+ +-.++ |. +.+ ++| .+||+|+++.
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~-~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l-~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGP-TGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI-EAL-PVADNSVDVIISNC 154 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCC-CCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch-hhC-CCCCCceeEEEEcC
Confidence 569999999998765443322 10 01355567666788888765 32 11111 11 222 344 7999999987
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
+|.... +.+.+|-|+-|+|||||.+++.|
T Consensus 155 v~~~~~---d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 155 VINLSP---DKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred cccCCC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 775433 45889999999999999999975
No 195
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.97 E-value=1.8e-05 Score=79.28 Aligned_cols=124 Identities=14% Similarity=0.157 Sum_probs=77.7
Q ss_pred chhhHHHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc--c
Q 006633 451 FREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--I 524 (637)
Q Consensus 451 f~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--~ 524 (637)
|....+.=..++......+..........+|||+|||.|.++..|.+... .++-+|.++.++..+.++ |+ +
T Consensus 19 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~ 95 (224)
T TIGR01983 19 FKPLHKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLKI 95 (224)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCce
Confidence 44444443444555554443221112356899999999999998876543 355666665666666553 32 2
Q ss_pred chhh-ccccccCCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 525 GTYQ-NWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 525 ~~~~-~wce~~~~yp~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
.... +..+.....|.+||+|.+.+++... .+.+.+|-++.++|+|||.+++++
T Consensus 96 ~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~---~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 96 EYRCTSVEDLAEKGAKSFDVVTCMEVLEHV---PDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred EEEeCCHHHhhcCCCCCccEEEehhHHHhC---CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 2222 1111111235789999997776543 356889999999999999999975
No 196
>PLN02366 spermidine synthase
Probab=97.95 E-value=5.4e-05 Score=80.63 Aligned_cols=97 Identities=14% Similarity=0.179 Sum_probs=65.2
Q ss_pred CCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHc---------CCCeEEEEeccccC--CCCCCCe
Q 006633 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER---------GVPALIGVMASIRL--PYPSRAF 283 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~er---------g~~~~~~~~d~~~L--pfpd~sF 283 (637)
.++||+||||.|..+..++++ .++++++++ ..++.+++. ...+.+...|+... ..+++.|
T Consensus 92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~-----~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~y 166 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEIDK-----MVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTY 166 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCH-----HHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCC
Confidence 569999999999999999887 345555544 444444432 23467777775332 1235789
Q ss_pred eEEEeccccccCCcC---CHHHHHHHHHhcccCCeEEEEEe
Q 006633 284 DMAHCSRCLIPWGQY---ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 284 DlV~~s~~L~h~~~~---d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
|+|++-..- ++... ....+++.+.+.|+|||.++...
T Consensus 167 DvIi~D~~d-p~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 167 DAIIVDSSD-PVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred CEEEEcCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 999985422 33221 13468999999999999998753
No 197
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.95 E-value=5.6e-06 Score=72.39 Aligned_cols=91 Identities=23% Similarity=0.310 Sum_probs=52.3
Q ss_pred eeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cccc--hhhccc-cccCCCC-CccceeeeccccccC
Q 006633 482 LDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIG--TYQNWC-EAMSTYP-RTYDLIHADSIFSLY 553 (637)
Q Consensus 482 lD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl~~--~~~~wc-e~~~~yp-~t~Dl~H~~~lfs~~ 553 (637)
||+|||+|.+..+|.++- -...++.+|.++.++..+.+| +.-. ...--. +.+...+ ++||+|.+.++|...
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999998762 335666777777788444443 2100 111001 2233333 599999999998876
Q ss_pred CCCcCHHHHHHHHhhcccCCcEE
Q 006633 554 KDRCEMEDVLLEMDRILRPEGSV 576 (637)
Q Consensus 554 ~~~c~~~~~l~e~dRiLrPgG~~ 576 (637)
-+++.+|-.+.++|+|||.+
T Consensus 80 ---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---S-HHHHHHHHTTT-TSS-EE
T ss_pred ---hhHHHHHHHHHHHcCCCCCC
Confidence 56789999999999999986
No 198
>PRK03612 spermidine synthase; Provisional
Probab=97.95 E-value=7.7e-05 Score=85.00 Aligned_cols=98 Identities=15% Similarity=0.091 Sum_probs=67.7
Q ss_pred CCCEEEEECCCCchHHHHHhhcC----CEEEEcCccccHHHHHHHHHHc------------CCCeEEEEecccc-CCCCC
Q 006633 218 SIRTAIDTGCGVASWGAYLMSRN----ILAVSFAPRDTHEAQVQFALER------------GVPALIGVMASIR-LPYPS 280 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~----v~~vdisp~Dls~a~i~~A~er------------g~~~~~~~~d~~~-Lpfpd 280 (637)
..++|||||||+|..+..++++. ++++ |+++.+++.+++. ...+.+...|... +...+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~V-----Eid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~ 371 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLV-----DLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLA 371 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEE-----ECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCC
Confidence 35689999999999999988762 3444 5556666666652 1346677777654 22335
Q ss_pred CCeeEEEeccccccCCcC----CHHHHHHHHHhcccCCeEEEEEe
Q 006633 281 RAFDMAHCSRCLIPWGQY----ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 281 ~sFDlV~~s~~L~h~~~~----d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
++||+|++.... +..+. ....+++.+.+.|||||.+++..
T Consensus 372 ~~fDvIi~D~~~-~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 372 EKFDVIIVDLPD-PSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCCCEEEEeCCC-CCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 789999997432 32210 12458899999999999999864
No 199
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.94 E-value=0.00012 Score=75.55 Aligned_cols=106 Identities=18% Similarity=0.226 Sum_probs=71.2
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHc----CC--CeEEEEecccc
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER----GV--PALIGVMASIR 275 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~er----g~--~~~~~~~d~~~ 275 (637)
+..|...+.+.+|+ +|||.|.|+|+++..|+.. .-.+..+ +.++...+.|+++ +. .+.+...|...
T Consensus 29 ~~~I~~~l~i~pG~--~VlEaGtGSG~lt~~l~r~v~p~G~v~t~---E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~ 103 (247)
T PF08704_consen 29 ISYILMRLDIRPGS--RVLEAGTGSGSLTHALARAVGPTGHVYTY---EFREDRAEKARKNFERHGLDDNVTVHHRDVCE 103 (247)
T ss_dssp HHHHHHHTT--TT---EEEEE--TTSHHHHHHHHHHTTTSEEEEE---ESSHHHHHHHHHHHHHTTCCTTEEEEES-GGC
T ss_pred HHHHHHHcCCCCCC--EEEEecCCcHHHHHHHHHHhCCCeEEEcc---ccCHHHHHHHHHHHHHcCCCCCceeEecceec
Confidence 44577777888877 9999999999999999875 2234444 4455555555433 33 46777778765
Q ss_pred CCCC---CCCeeEEEeccccccCCcCCHHHHHHHHHhcc-cCCeEEEEEeC
Q 006633 276 LPYP---SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVL-RPGGYWILSGP 322 (637)
Q Consensus 276 Lpfp---d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvL-KPGG~Lvls~p 322 (637)
..|+ ++.||.|+. .++ ++-.++..+.++| ||||.+++-.|
T Consensus 104 ~g~~~~~~~~~DavfL-----Dlp--~Pw~~i~~~~~~L~~~gG~i~~fsP 147 (247)
T PF08704_consen 104 EGFDEELESDFDAVFL-----DLP--DPWEAIPHAKRALKKPGGRICCFSP 147 (247)
T ss_dssp G--STT-TTSEEEEEE-----ESS--SGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred ccccccccCcccEEEE-----eCC--CHHHHHHHHHHHHhcCCceEEEECC
Confidence 4443 367999986 444 5666899999999 99999999887
No 200
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=97.93 E-value=4.8e-05 Score=77.89 Aligned_cols=97 Identities=11% Similarity=0.062 Sum_probs=62.3
Q ss_pred CCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCC--CeEEEEeccccC-C-----CCCCCeeE
Q 006633 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIRL-P-----YPSRAFDM 285 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~L-p-----fpd~sFDl 285 (637)
.++|||+|||+|..+..|+.. .++++++++.....+...+ .+.+. .+.+..+++... + .+.++||+
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~-~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFI-KKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 348999999999877777653 3566666443222222222 23343 366666665432 1 12468999
Q ss_pred EEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 286 AHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 286 V~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
|+.-. ..+ ....++.++.++|||||.+++..
T Consensus 148 VfiDa----~k~-~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 148 AFVDA----DKP-NYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEECC----CHH-HHHHHHHHHHHhcCCCeEEEEEc
Confidence 98743 222 45678999999999999998864
No 201
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.93 E-value=1.8e-05 Score=82.78 Aligned_cols=113 Identities=19% Similarity=0.269 Sum_probs=80.3
Q ss_pred HHHHHHhhhccCCCCCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHH----HHhhcccchhhccccccCC
Q 006633 462 VTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGV----IYERGLIGTYQNWCEAMST 536 (637)
Q Consensus 462 v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~----~~eRgl~~~~~~wce~~~~ 536 (637)
...+..++..+.= ...-+|||+|||-|+.+-+++++ +| ||+.++.+++|+.. |.++|+-.-.+.--+....
T Consensus 58 ~~k~~~~~~kl~L-~~G~~lLDiGCGWG~l~~~aA~~y~v---~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd 133 (283)
T COG2230 58 RAKLDLILEKLGL-KPGMTLLDIGCGWGGLAIYAAEEYGV---TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD 133 (283)
T ss_pred HHHHHHHHHhcCC-CCCCEEEEeCCChhHHHHHHHHHcCC---EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc
Confidence 3334444433332 34789999999999999999887 66 55666666677665 4568885433322233344
Q ss_pred CCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 537 YPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 537 yp~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
++..||=|-+.|+|..... -..++++--+.++|+|||.+++-
T Consensus 134 ~~e~fDrIvSvgmfEhvg~-~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 134 FEEPFDRIVSVGMFEHVGK-ENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred cccccceeeehhhHHHhCc-ccHHHHHHHHHhhcCCCceEEEE
Confidence 5556999999999986554 36789999999999999999884
No 202
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.93 E-value=2.8e-05 Score=77.34 Aligned_cols=99 Identities=19% Similarity=0.259 Sum_probs=67.2
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc----cchhh-ccccccCCCC-Cccceeeecccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL----IGTYQ-NWCEAMSTYP-RTYDLIHADSIF 550 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl----~~~~~-~wce~~~~yp-~t~Dl~H~~~lf 550 (637)
...+|||+|||.|.+..++.+..--.-.++.+|.++..+..+.++.- +-.++ |..+ .+ ++ .+||+|++..++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~-~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEA-LP-FEDNSFDAVTIAFGL 116 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhc-CC-CCCCcEEEEEEeeee
Confidence 46799999999999999887652100245555655567777776642 12222 2111 12 33 689999987665
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 551 SLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 551 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
.. -.+...+|.++.++|+|||++++.+
T Consensus 117 ~~---~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 117 RN---VTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred CC---cccHHHHHHHHHHHcCCCcEEEEEE
Confidence 43 3457899999999999999999865
No 203
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.92 E-value=4.4e-05 Score=84.80 Aligned_cols=109 Identities=15% Similarity=0.192 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHH----cCC-CeEEEEeccc
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALE----RGV-PALIGVMASI 274 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~e----rg~-~~~~~~~d~~ 274 (637)
+.+++.+.+++...++ .+|||+|||+|.++..|++.. +++++++ +.+++.|++ .+. ++.+..+|..
T Consensus 278 ~~l~~~~~~~l~~~~~--~~vLDl~cG~G~~sl~la~~~~~V~~vE~~-----~~av~~a~~n~~~~~~~nv~~~~~d~~ 350 (431)
T TIGR00479 278 EKLVDRALEALELQGE--ELVVDAYCGVGTFTLPLAKQAKSVVGIEVV-----PESVEKAQQNAELNGIANVEFLAGTLE 350 (431)
T ss_pred HHHHHHHHHHhccCCC--CEEEEcCCCcCHHHHHHHHhCCEEEEEEcC-----HHHHHHHHHHHHHhCCCceEEEeCCHH
Confidence 3344555555544443 489999999999999999874 5555554 444444432 333 5778888765
Q ss_pred cC----CCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 275 RL----PYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 275 ~L----pfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.. ++.+++||+|+....-.. -...+++.+.+ |+|++.++++..
T Consensus 351 ~~l~~~~~~~~~~D~vi~dPPr~G----~~~~~l~~l~~-l~~~~ivyvsc~ 397 (431)
T TIGR00479 351 TVLPKQPWAGQIPDVLLLDPPRKG----CAAEVLRTIIE-LKPERIVYVSCN 397 (431)
T ss_pred HHHHHHHhcCCCCCEEEECcCCCC----CCHHHHHHHHh-cCCCEEEEEcCC
Confidence 42 344568999997553211 23456666554 899998888743
No 204
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=97.92 E-value=8.8e-06 Score=77.04 Aligned_cols=99 Identities=22% Similarity=0.355 Sum_probs=72.8
Q ss_pred CceeEeeecccchhhhhhhcC-C--CeEEEEeccCCCCcchhHHHHhh----cc--cchhh-ccccccCC-CCCccceee
Q 006633 477 RYRNLLDMNAYLGGFAAALVD-D--PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMST-YPRTYDLIH 545 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~-~--~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~-~wce~~~~-yp~t~Dl~H 545 (637)
+.-+|||+|||+|-+.-.|++ . +. +++.+|.++.+++.+.++ |+ +-.++ |+-+ ++. |+..||+|.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~---~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~ 78 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGA---KIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIII 78 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTS---EEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCC---EEEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEE
Confidence 456899999999999999983 2 23 356668888899888884 55 23333 3323 221 458999999
Q ss_pred eccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006633 546 ADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV 582 (637)
Q Consensus 546 ~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 582 (637)
+.++| .+-.+.+.+|-+|-|.|+|||.+++++..
T Consensus 79 ~~~~l---~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVL---HHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTG---GGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCch---hhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 98888 34456678999999999999999998765
No 205
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.92 E-value=5.8e-05 Score=73.69 Aligned_cols=101 Identities=15% Similarity=0.122 Sum_probs=59.7
Q ss_pred CCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcC----CCeEEEEecccc-C---CCCCCCeeE
Q 006633 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG----VPALIGVMASIR-L---PYPSRAFDM 285 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg----~~~~~~~~d~~~-L---pfpd~sFDl 285 (637)
.+.+|||+|||+|..+..++.. .|+.+|..+ .-+.....+..++ ..+.+...+-.. . ....+.||+
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~--~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE--VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S---HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch--hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 4569999999999888888776 466677644 2222222332222 234444443211 1 123468999
Q ss_pred EEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 286 AHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 286 V~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|+++.+++ ... ..+.++.-+.++|+|+|.+++..+
T Consensus 123 IlasDv~Y-~~~-~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 123 ILASDVLY-DEE-LFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEES--S--GG-GHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEecccc-hHH-HHHHHHHHHHHHhCCCCEEEEEeC
Confidence 99999994 444 788999999999999999877754
No 206
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.91 E-value=5.2e-05 Score=81.12 Aligned_cols=114 Identities=19% Similarity=0.184 Sum_probs=83.3
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcC----C-CeEE-EEeccccCC
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG----V-PALI-GVMASIRLP 277 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg----~-~~~~-~~~d~~~Lp 277 (637)
+...+.++.....|. .|||-=||||++.....-.|..+++. |+...|++-|+.+. + +..+ ...|+..+|
T Consensus 185 lAR~mVNLa~v~~G~--~vlDPFcGTGgiLiEagl~G~~viG~---Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp 259 (347)
T COG1041 185 LARAMVNLARVKRGE--LVLDPFCGTGGILIEAGLMGARVIGS---DIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP 259 (347)
T ss_pred HHHHHHHHhccccCC--EeecCcCCccHHHHhhhhcCceEeec---chHHHHHhhhhhhhhhhCcCceeEEEecccccCC
Confidence 334455565556655 99999999999988887778888877 88888888776542 2 2323 344899999
Q ss_pred CCCCCeeEEEecccc-----ccCC--cCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 278 YPSRAFDMAHCSRCL-----IPWG--QYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 278 fpd~sFDlV~~s~~L-----~h~~--~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+++++||.|++-.-. ..-. ++-...+|+.+.++||+||++++..|
T Consensus 260 l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 260 LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 999999999983311 0111 01356789999999999999999977
No 207
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.87 E-value=1.5e-05 Score=80.65 Aligned_cols=99 Identities=14% Similarity=0.205 Sum_probs=70.2
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cccchhh--ccccccCCCCCccceeeecccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGTYQ--NWCEAMSTYPRTYDLIHADSIF 550 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~--~wce~~~~yp~t~Dl~H~~~lf 550 (637)
....|||+|||.|.++..|.+.. .+++-+|.++..+..+.++ ++...++ ++.+.....+..||+|.+..+|
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 35679999999999999998775 3566677776777776655 3311121 2222211234789999998777
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 551 SLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 551 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
.... +...+|-++.|+|+|||.+++...
T Consensus 125 ~~~~---~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 125 EHVP---DPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred hccC---CHHHHHHHHHHHcCCCcEEEEEec
Confidence 6544 457899999999999999999853
No 208
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.87 E-value=2.9e-05 Score=77.88 Aligned_cols=96 Identities=17% Similarity=0.186 Sum_probs=70.4
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhhcc-cchhhccccccCCCC-CccceeeeccccccCC
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL-IGTYQNWCEAMSTYP-RTYDLIHADSIFSLYK 554 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl-~~~~~~wce~~~~yp-~t~Dl~H~~~lfs~~~ 554 (637)
...|||+|||+|.+..+|.+. +- .++..+|.++.++..+.++.- +.+.+ ...+.+++ ++||+|-+.+++....
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~~~~~~~~~--~d~~~~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAYLPNINIIQ--GSLFDPFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhhCCCCcEEE--eeccCCCCCCCEEEEEECChhhhCC
Confidence 567999999999999999775 32 357777888889999877521 12222 12233555 8999999999987653
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 555 DRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 555 ~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
.-.+..+|-||.|++ +++++|.+
T Consensus 120 -p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 120 -PDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred -HHHHHHHHHHHHhhc--CcEEEEEE
Confidence 346788999999998 57888864
No 209
>PRK07402 precorrin-6B methylase; Provisional
Probab=97.86 E-value=8e-05 Score=73.73 Aligned_cols=111 Identities=14% Similarity=0.186 Sum_probs=67.1
Q ss_pred CceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHh----hcc--cchhh-ccccccCCCCCccceeeecc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYE----RGL--IGTYQ-NWCEAMSTYPRTYDLIHADS 548 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~e----Rgl--~~~~~-~wce~~~~yp~t~Dl~H~~~ 548 (637)
...+|||+|||+|.++..++.. +- -.|+.+|.++.++..+.+ .|+ +-+++ |.-+.+...+..+|.++.++
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~--~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~ 117 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPK--GRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG 117 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC
Confidence 3568999999999998877532 11 235555666567666554 244 22221 11111211222356655422
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCC
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGME 596 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~ 596 (637)
...++.++-++.|+|+|||++++... .+.+..+.+.++.+.
T Consensus 118 -------~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~ 159 (196)
T PRK07402 118 -------GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQ 159 (196)
T ss_pred -------CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcC
Confidence 23578999999999999999999753 345555666665543
No 210
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.85 E-value=5.8e-05 Score=76.62 Aligned_cols=98 Identities=20% Similarity=0.338 Sum_probs=63.5
Q ss_pred CCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCC---------C-------------------
Q 006633 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV---------P------------------- 265 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~---------~------------------- 265 (637)
....+|||||-.|.++..+++. .+.++||++ ..++.|++... .
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~-----~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~ 132 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDP-----VLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNE 132 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccH-----HHHHHHHHhccccccccccccCCCcccccccccccccccc
Confidence 3558999999999999999886 466776644 45555553210 0
Q ss_pred ------------e-----EEEEeccccCCCCCCCeeEEEeccc----cccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 266 ------------A-----LIGVMASIRLPYPSRAFDMAHCSRC----LIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 266 ------------~-----~~~~~d~~~Lpfpd~sFDlV~~s~~----L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
. .+......-+.+....||+|+|-.+ -..|.++-...+|..+.++|.|||+|++.
T Consensus 133 a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 133 ADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 0 0000001112234567999998432 23455545668999999999999999996
No 211
>PRK04266 fibrillarin; Provisional
Probab=97.84 E-value=0.00011 Score=74.89 Aligned_cols=93 Identities=16% Similarity=0.114 Sum_probs=55.7
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHh----h-cccchhhcccccc--CCCCCccceeeecccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----R-GLIGTYQNWCEAM--STYPRTYDLIHADSIF 550 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----R-gl~~~~~~wce~~--~~yp~t~Dl~H~~~lf 550 (637)
...|||+|||+|++..+|.+.-= .-.|...|.++.++..+.+ + ++..+..|-.+.. ...+.+||+|=++
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d--- 148 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQD--- 148 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEEC---
Confidence 45899999999999999977510 0134555666666664433 2 2222222322211 1234668875331
Q ss_pred ccCCCCcCH---HHHHHHHhhcccCCcEEEEE
Q 006633 551 SLYKDRCEM---EDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 551 s~~~~~c~~---~~~l~e~dRiLrPgG~~i~~ 579 (637)
-.+. ..+|.|+-|+|||||.++|+
T Consensus 149 -----~~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 149 -----VAQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred -----CCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 1221 23577999999999999993
No 212
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.82 E-value=2.8e-05 Score=77.10 Aligned_cols=121 Identities=13% Similarity=0.163 Sum_probs=76.8
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHh----hcc--cchhhccccccC--CCC-Cccceeeecc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGL--IGTYQNWCEAMS--TYP-RTYDLIHADS 548 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgl--~~~~~~wce~~~--~yp-~t~Dl~H~~~ 548 (637)
-..|||+|||.|.|+.+|+.+.- -.||+.+|.+..++..+.+ .|+ +-+.+.=...+. .+| .++|.|+++-
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 46899999999999999987521 1367777777677766654 344 222221011111 245 5899887642
Q ss_pred c---cc--cCCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHhcCC-cee
Q 006633 549 I---FS--LYKDRCEMEDVLLEMDRILRPEGSVIIR-DDVDILVKIKSITDGME-WEG 599 (637)
Q Consensus 549 l---fs--~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~~~~-W~~ 599 (637)
- +. ..+.|...+.+|-++-|+|||||.+++. |..+....+.+.+...- |+.
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~ 153 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFEN 153 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence 1 11 1224556688999999999999999985 66666666666554432 443
No 213
>PLN02672 methionine S-methyltransferase
Probab=97.80 E-value=0.00042 Score=84.26 Aligned_cols=102 Identities=15% Similarity=0.086 Sum_probs=65.0
Q ss_pred CCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHc--------------C--CCeEEEEeccccCCC
Q 006633 219 IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER--------------G--VPALIGVMASIRLPY 278 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~er--------------g--~~~~~~~~d~~~Lpf 278 (637)
+.+|||+|||+|.++..|+++ .++++|+++..+..+..+..+.. . ..+.+...|.... +
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~-~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY-C 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh-c
Confidence 348999999999999999875 36667666544443333322210 0 1367777775443 2
Q ss_pred CC--CCeeEEEeccccccCCc--------------------------------CC----HHHHHHHHHhcccCCeEEEEE
Q 006633 279 PS--RAFDMAHCSRCLIPWGQ--------------------------------YA----DGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 279 pd--~sFDlV~~s~~L~h~~~--------------------------------~d----~~~~L~ei~RvLKPGG~Lvls 320 (637)
.+ ..||+|+++.-.+.-.+ +| ..+++.++.++|+|||.+++.
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 22 36999999654321110 00 146788888999999999997
Q ss_pred e
Q 006633 321 G 321 (637)
Q Consensus 321 ~ 321 (637)
.
T Consensus 278 i 278 (1082)
T PLN02672 278 M 278 (1082)
T ss_pred E
Confidence 5
No 214
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.80 E-value=0.00018 Score=63.08 Aligned_cols=95 Identities=28% Similarity=0.416 Sum_probs=63.0
Q ss_pred EEEECCCCchHH--HHHhhcCCEEEEcCccccHHHHHHHHHHcC----CC-eEEEEecccc--CCCCC-CCeeEEEeccc
Q 006633 222 AIDTGCGVASWG--AYLMSRNILAVSFAPRDTHEAQVQFALERG----VP-ALIGVMASIR--LPYPS-RAFDMAHCSRC 291 (637)
Q Consensus 222 VLDIGCGtG~~a--~~La~~~v~~vdisp~Dls~a~i~~A~erg----~~-~~~~~~d~~~--Lpfpd-~sFDlV~~s~~ 291 (637)
+||+|||+|... ..+...+...+++ |.+..++..+.... .. +.+...+... +++.. ..||++ +...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGV---DLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEE---eCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 999999999854 3333322234343 44444444332222 11 4566666555 78877 589999 7666
Q ss_pred cccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 292 LIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 292 L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
..++. .....+.++.++|+|+|.+++...
T Consensus 128 ~~~~~--~~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 128 VLHLL--PPAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred ehhcC--CHHHHHHHHHHhcCCCcEEEEEec
Confidence 65666 378899999999999999999865
No 215
>PRK06202 hypothetical protein; Provisional
Probab=97.80 E-value=6e-05 Score=76.52 Aligned_cols=102 Identities=16% Similarity=0.191 Sum_probs=70.3
Q ss_pred CCceeEeeecccchhhhhhhcCC---CeEEEEeccCCCCcchhHHHHhhcc-cc--hhhccccccCCCCCccceeeeccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYERGL-IG--TYQNWCEAMSTYPRTYDLIHADSI 549 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~eRgl-~~--~~~~wce~~~~yp~t~Dl~H~~~l 549 (637)
.+..+|||+|||+|.++..|.+. .-...+|+.+|.+++++..+.++.- .+ ....=++.+..-+.+||+|-++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 45678999999999998887641 1112468888998899999988732 11 111112344443589999999887
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
|....+. .+..+|-||-|++| |.+++.|
T Consensus 139 lhh~~d~-~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 139 LHHLDDA-EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred eecCChH-HHHHHHHHHHHhcC--eeEEEec
Confidence 7654432 35679999999999 5666665
No 216
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.77 E-value=6.9e-05 Score=78.36 Aligned_cols=82 Identities=13% Similarity=0.082 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHHcC--CCeEEEEeccccCCC
Q 006633 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLPY 278 (637)
Q Consensus 203 ~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~erg--~~~~~~~~d~~~Lpf 278 (637)
..++.+.+.+....+ .+|||||||+|.++..|++++ ++++|+ ++.+++.++++. .++.+..+|...+++
T Consensus 29 ~i~~~i~~~l~~~~~--~~VLEiG~G~G~lt~~L~~~~~~v~avE~-----d~~~~~~~~~~~~~~~v~~i~~D~~~~~~ 101 (272)
T PRK00274 29 NILDKIVDAAGPQPG--DNVLEIGPGLGALTEPLLERAAKVTAVEI-----DRDLAPILAETFAEDNLTIIEGDALKVDL 101 (272)
T ss_pred HHHHHHHHhcCCCCc--CeEEEeCCCccHHHHHHHHhCCcEEEEEC-----CHHHHHHHHHhhccCceEEEEChhhcCCH
Confidence 345666666655544 489999999999999999884 455555 445555555432 467888889888877
Q ss_pred CCCCeeEEEeccc
Q 006633 279 PSRAFDMAHCSRC 291 (637)
Q Consensus 279 pd~sFDlV~~s~~ 291 (637)
++-.+|.|+++.-
T Consensus 102 ~~~~~~~vv~NlP 114 (272)
T PRK00274 102 SELQPLKVVANLP 114 (272)
T ss_pred HHcCcceEEEeCC
Confidence 6433588888763
No 217
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.77 E-value=0.00023 Score=77.87 Aligned_cols=95 Identities=12% Similarity=0.058 Sum_probs=61.8
Q ss_pred CEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHH----HcCC-CeEEEEeccccCC-CCCCCeeEEEeccccc
Q 006633 220 RTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFAL----ERGV-PALIGVMASIRLP-YPSRAFDMAHCSRCLI 293 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~----erg~-~~~~~~~d~~~Lp-fpd~sFDlV~~s~~L~ 293 (637)
.+|||+|||+|.++..++.++..++.+ |+++.+++.|+ ..+. ++.+...|..... -....||+|+...-.
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~~v~~v---E~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr- 310 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDTQLTGI---EIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR- 310 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCCeEEEE---ECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC-
Confidence 489999999999999999875434333 33444444433 3343 5778877765432 122469999997633
Q ss_pred cCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 294 PWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 294 h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.. -...+++.+. .++|++.++++..
T Consensus 311 --~G-~~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 311 --RG-IGKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred --CC-CcHHHHHHHH-hcCCCeEEEEEeC
Confidence 21 2345555554 4799999999865
No 218
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=97.76 E-value=2.9e-05 Score=83.73 Aligned_cols=117 Identities=11% Similarity=0.091 Sum_probs=79.0
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhhcc---cchhhccccccCCCC-Cccceeeecccccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL---IGTYQNWCEAMSTYP-RTYDLIHADSIFSL 552 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl---~~~~~~wce~~~~yp-~t~Dl~H~~~lfs~ 552 (637)
..+|||+|||+|.++..+.+. +- .+|+.+|.+++++..+.++.- +.+.+.-.+.+ +++ .+||+|-+.+++..
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~l-p~~~~sFDvVIs~~~L~~ 190 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDL-PFPTDYADRYVSAGSIEY 190 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhC-CCCCCceeEEEEcChhhh
Confidence 468999999999988887653 21 356667777788888877631 22222111222 344 79999988777655
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEEeCHH-----------------HHHHHHHHHhcCCceeE
Q 006633 553 YKDRCEMEDVLLEMDRILRPEGSVIIRDDVD-----------------ILVKIKSITDGMEWEGR 600 (637)
Q Consensus 553 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~-----------------~~~~~~~~~~~~~W~~~ 600 (637)
.. +.+.+|-|+-|+|+|||.+++.+... ..+.+.++++...++..
T Consensus 191 ~~---d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V 252 (340)
T PLN02490 191 WP---DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDV 252 (340)
T ss_pred CC---CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEE
Confidence 44 44789999999999999998864321 13556666777777654
No 219
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.76 E-value=0.00015 Score=79.87 Aligned_cols=102 Identities=11% Similarity=0.060 Sum_probs=63.2
Q ss_pred CCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCC---CeEEEEeccccCC--C--CCCCeeEEEe
Q 006633 219 IRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGV---PALIGVMASIRLP--Y--PSRAFDMAHC 288 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~---~~~~~~~d~~~Lp--f--pd~sFDlV~~ 288 (637)
+.+|||+|||+|.++..++..+ ++++|+++..+..+..+.+ .++. .+.+..+|..... + ..++||+|++
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~-~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVE-LNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 3589999999999988766553 5666665544433332222 2343 4677777765431 1 3468999999
Q ss_pred ccccccCCcC-------CHHHHHHHHHhcccCCeEEEEEe
Q 006633 289 SRCLIPWGQY-------ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 289 s~~L~h~~~~-------d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
..-...-... ....++..+.++|+|||.|++..
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 7532111100 23345566789999999999864
No 220
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.76 E-value=3.6e-05 Score=75.73 Aligned_cols=128 Identities=14% Similarity=0.190 Sum_probs=70.4
Q ss_pred ceeEeeecccchhhhhhhcCC-----CeEEEEeccCCCCcchhHHHHhhcccchhhcccccc------CCCC-Cccceee
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-----PLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAM------STYP-RTYDLIH 545 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-----~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~------~~yp-~t~Dl~H 545 (637)
..+|||+|||+|++..++.++ .|+.. |.++ +. ...++--+..|..+.. ..+| .+||+|=
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~v-----Dis~-~~---~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~ 103 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAV-----DLQP-MK---PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVM 103 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEE-----eccc-cc---cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEE
Confidence 568999999999998877553 14443 3331 11 0112211112333211 1244 6899887
Q ss_pred eccccc--cC------CCCcCHHHHHHHHhhcccCCcEEEEE-eCH----HHHHHHHHHHhcCCceeEEe-ccCCCCCCc
Q 006633 546 ADSIFS--LY------KDRCEMEDVLLEMDRILRPEGSVIIR-DDV----DILVKIKSITDGMEWEGRIA-DHENGPRQR 611 (637)
Q Consensus 546 ~~~lfs--~~------~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~----~~~~~~~~~~~~~~W~~~~~-~~e~~~~~~ 611 (637)
+++... .. ...+.++.+|.++.|+|||||.+++. ... +++..+++ .+ |.+.+. |.-......
T Consensus 104 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~---~~-~~~~~~~~~~~~~~~~ 179 (188)
T TIGR00438 104 SDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRK---LF-EKVKVTKPQASRKRSA 179 (188)
T ss_pred cCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHh---hh-ceEEEeCCCCCCcccc
Confidence 754311 11 11123478999999999999999994 222 23333333 22 444433 322333357
Q ss_pred ceEEEEE
Q 006633 612 EKILFAN 618 (637)
Q Consensus 612 ~~~l~~~ 618 (637)
|+.+||.
T Consensus 180 ~~~~~~~ 186 (188)
T TIGR00438 180 EVYIVAK 186 (188)
T ss_pred eEEEEEe
Confidence 8999885
No 221
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.76 E-value=0.00012 Score=75.90 Aligned_cols=84 Identities=15% Similarity=0.184 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc---CCCeEEEEeccccCCC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER---GVPALIGVMASIRLPY 278 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er---g~~~~~~~~d~~~Lpf 278 (637)
...++.+.+.+...++ .+|||||||+|.++..|++++..++.+ |+++.+++.+.++ ..++.+..+|...+++
T Consensus 15 ~~~~~~iv~~~~~~~~--~~VLEIG~G~G~lt~~L~~~~~~v~~v---Eid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~ 89 (258)
T PRK14896 15 DRVVDRIVEYAEDTDG--DPVLEIGPGKGALTDELAKRAKKVYAI---ELDPRLAEFLRDDEIAAGNVEIIEGDALKVDL 89 (258)
T ss_pred HHHHHHHHHhcCCCCc--CeEEEEeCccCHHHHHHHHhCCEEEEE---ECCHHHHHHHHHHhccCCCEEEEEeccccCCc
Confidence 3456667776655544 489999999999999999985433333 4445555555543 2357788888888776
Q ss_pred CCCCeeEEEecccc
Q 006633 279 PSRAFDMAHCSRCL 292 (637)
Q Consensus 279 pd~sFDlV~~s~~L 292 (637)
+ .||.|+++..+
T Consensus 90 ~--~~d~Vv~NlPy 101 (258)
T PRK14896 90 P--EFNKVVSNLPY 101 (258)
T ss_pred h--hceEEEEcCCc
Confidence 5 48999998765
No 222
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.75 E-value=7.2e-05 Score=81.77 Aligned_cols=120 Identities=15% Similarity=0.134 Sum_probs=76.7
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHH----Hhhcc--cchhh-ccccccCCCC-Cccceeeecc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVI----YERGL--IGTYQ-NWCEAMSTYP-RTYDLIHADS 548 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~----~eRgl--~~~~~-~wce~~~~yp-~t~Dl~H~~~ 548 (637)
.-..+||+|||.|.|..+|+.+.= -.|++.+|-+..++..+ .++|+ +-+++ |.-+-+..+| .++|.|+++
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~ln- 199 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVH- 199 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEe-
Confidence 346899999999999999986520 12666666665565444 44565 22222 2212233455 899999874
Q ss_pred cccc-C-C--C-CcCHHHHHHHHhhcccCCcEEEE-EeCHHHHHHHHHHHhcC-Ccee
Q 006633 549 IFSL-Y-K--D-RCEMEDVLLEMDRILRPEGSVII-RDDVDILVKIKSITDGM-EWEG 599 (637)
Q Consensus 549 lfs~-~-~--~-~c~~~~~l~e~dRiLrPgG~~i~-~d~~~~~~~~~~~~~~~-~W~~ 599 (637)
|.. | + + |=..+.+|-|+-|+|+|||.+.| +|..+....+.+.+... +++.
T Consensus 200 -FPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 200 -FPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred -CCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence 432 1 1 1 11236899999999999999988 57777777766665444 4444
No 223
>PRK14967 putative methyltransferase; Provisional
Probab=97.75 E-value=7.5e-05 Score=75.54 Aligned_cols=120 Identities=13% Similarity=0.256 Sum_probs=74.0
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc-cchhh-ccccccCCCC-Cccceeeecccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTYQ-NWCEAMSTYP-RTYDLIHADSIF 550 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-~~~~~-~wce~~~~yp-~t~Dl~H~~~lf 550 (637)
...|||+|||.|.++..++..+. -+|+.+|.++.++..+.++ |+ +-+++ |+.+ ..+ ..||+|.++--|
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~---~~~~~~fD~Vi~npPy 111 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR---AVEFRPFDVVVSNPPY 111 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh---hccCCCeeEEEECCCC
Confidence 46899999999999998887643 2566667666677655542 33 11221 3322 234 689999987433
Q ss_pred ccCC------------------CCcCHHHHHHHHhhcccCCcEEEEEe-CHHHHHHHHHHHhcCCceeEEe
Q 006633 551 SLYK------------------DRCEMEDVLLEMDRILRPEGSVIIRD-DVDILVKIKSITDGMEWEGRIA 602 (637)
Q Consensus 551 s~~~------------------~~c~~~~~l~e~dRiLrPgG~~i~~d-~~~~~~~~~~~~~~~~W~~~~~ 602 (637)
.... ....++.++-++-|+|+|||.+++-. .......+.+.+++-.|+....
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEEE
Confidence 2110 11225678888999999999999842 2223344555555555655543
No 224
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.75 E-value=9.1e-05 Score=84.10 Aligned_cols=102 Identities=13% Similarity=0.097 Sum_probs=71.3
Q ss_pred CCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccC--CCCCCCeeEEEecc
Q 006633 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRL--PYPSRAFDMAHCSR 290 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~L--pfpd~sFDlV~~s~ 290 (637)
....+||||||.|.++..++.. ++.++++...-+..+. +.+.+.++ ++.+...+...+ -++++++|.|+..+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~-~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVL-KLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHH-HHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 4568999999999999999987 5666666443222222 23334444 455555554322 27889999999877
Q ss_pred ccccCCcC-------CHHHHHHHHHhcccCCeEEEEEe
Q 006633 291 CLIPWGQY-------ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 291 ~L~h~~~~-------d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
-= +|+.. -...++..+.++|||||.+.+.+
T Consensus 426 PD-PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 426 PD-PWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CC-CCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 55 78642 23478999999999999999975
No 225
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.74 E-value=5.2e-05 Score=89.29 Aligned_cols=102 Identities=14% Similarity=0.102 Sum_probs=65.7
Q ss_pred CCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCC---CeEEEEeccccC-CCCCCCeeEEEeccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGV---PALIGVMASIRL-PYPSRAFDMAHCSRC 291 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~---~~~~~~~d~~~L-pfpd~sFDlV~~s~~ 291 (637)
+++|||+|||+|.++..++..+ |+++|+++..+..+..++. .++. .+.+..+|.... .-..++||+|++..-
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~-~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFA-LNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH-HhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 3589999999999999999874 4555554443333332222 2333 367777775432 111468999999642
Q ss_pred cccC----------CcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 292 LIPW----------GQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 292 L~h~----------~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
...- .. +...++..+.++|+|||.++++..
T Consensus 618 ~f~~~~~~~~~~~~~~-~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 618 TFSNSKRMEDSFDVQR-DHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCccchhhhHHH-HHHHHHHHHHHHcCCCCEEEEEeC
Confidence 1110 11 345678889999999999998754
No 226
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.74 E-value=9.5e-05 Score=76.57 Aligned_cols=136 Identities=17% Similarity=0.306 Sum_probs=84.1
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh---cc---cchhh-ccccccCCCC-Cccceeeeccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER---GL---IGTYQ-NWCEAMSTYP-RTYDLIHADSI 549 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR---gl---~~~~~-~wce~~~~yp-~t~Dl~H~~~l 549 (637)
..+|||+|||.|.++.+|++..- ...|+.+|.++.++..+.+. +. +-+++ |+ +...+ ..||+|-++--
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~---~~~~~~~~fD~Iv~npP 184 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDW---FEPLPGGRFDLIVSNPP 184 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccc---cCcCCCCceeEEEECCC
Confidence 45799999999999999976520 13566667776777777664 22 22222 33 33344 78999987533
Q ss_pred cccC-------------C-------CC---cCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCceeEEeccCC
Q 006633 550 FSLY-------------K-------DR---CEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHEN 606 (637)
Q Consensus 550 fs~~-------------~-------~~---c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e~ 606 (637)
+... . .. -.+..++-++.++|+|||++++--....-..++++++...+...... .+
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~-~d 263 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETR-KD 263 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEe-cC
Confidence 2210 0 00 11246788888999999999996544455667777776666422221 11
Q ss_pred CCCCcceEEEEEe
Q 006633 607 GPRQREKILFANK 619 (637)
Q Consensus 607 ~~~~~~~~l~~~K 619 (637)
-.+.+++++++|
T Consensus 264 -~~~~~r~~~~~~ 275 (275)
T PRK09328 264 -LAGRDRVVLGRR 275 (275)
T ss_pred -CCCCceEEEEEC
Confidence 125678888765
No 227
>PRK06922 hypothetical protein; Provisional
Probab=97.74 E-value=3.3e-05 Score=88.80 Aligned_cols=102 Identities=17% Similarity=0.222 Sum_probs=69.9
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhhcc-----cchhhccccccCC-C-CCccceeeeccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL-----IGTYQNWCEAMST-Y-PRTYDLIHADSI 549 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl-----~~~~~~wce~~~~-y-p~t~Dl~H~~~l 549 (637)
..+|||+|||+|.++.+|++. + ..+|+.+|.+..++..+.++-- +-+++.=+..++. + |.+||+|.++.+
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P--~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETE--DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 458999999999998888653 2 2467778888888888876521 1111111123332 4 489999988665
Q ss_pred cccC-------C---CCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 550 FSLY-------K---DRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 550 fs~~-------~---~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
+-.+ . +.-++..+|-|+-|+|||||.++|.|.
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 4311 0 123567899999999999999999874
No 228
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.73 E-value=0.00015 Score=75.81 Aligned_cols=104 Identities=19% Similarity=0.245 Sum_probs=69.3
Q ss_pred CCCEEEEECCCCc----hHHHHHhhcCC----EEEEcCccccHHHHHHHHHH---------cCCC---------------
Q 006633 218 SIRTAIDTGCGVA----SWGAYLMSRNI----LAVSFAPRDTHEAQVQFALE---------RGVP--------------- 265 (637)
Q Consensus 218 ~~r~VLDIGCGtG----~~a~~La~~~v----~~vdisp~Dls~a~i~~A~e---------rg~~--------------- 265 (637)
..-+|+-.||++| +++..|.+... ..+.|.+.|++...++.|+. ++++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4568999999999 56666655421 12333333555566655542 1111
Q ss_pred ----------eEEEEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 266 ----------ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 266 ----------~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+.|...+....++..+.||+|+|-.+++.+..+...+++..++..|+|||+|++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 22333333333324567999999999999998677899999999999999999963
No 229
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.73 E-value=0.00014 Score=77.75 Aligned_cols=97 Identities=21% Similarity=0.192 Sum_probs=70.9
Q ss_pred CCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCC
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~ 296 (637)
....+|+|.|.|..+..+... .+.+++++...+.+++...+ ..+...-+|...- .|.+ |+|+.-++++||.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~----~gV~~v~gdmfq~-~P~~--daI~mkWiLhdwt 250 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA----PGVEHVAGDMFQD-TPKG--DAIWMKWILHDWT 250 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc----CCcceeccccccc-CCCc--CeEEEEeecccCC
Confidence 458999999999999988876 67888884433332222222 2344444443222 3333 6999999999999
Q ss_pred cCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 297 QYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 297 ~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+++..++|+++...|+|||.+++...
T Consensus 251 DedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 251 DEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 88899999999999999999999864
No 230
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.73 E-value=4.7e-05 Score=76.67 Aligned_cols=94 Identities=16% Similarity=0.104 Sum_probs=57.6
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc--cchhhccccccCCCC--Cccceeeec
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTYP--RTYDLIHAD 547 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~~wce~~~~yp--~t~Dl~H~~ 547 (637)
....+|||+|||+|.+++.|++.-=-.-.|+.+|..+.++..+.++ |+ +-+.+ +..+..++ ..||+|++.
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~--gd~~~~~~~~~~fD~I~~~ 152 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIV--GDGTLGYEENAPYDRIYVT 152 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEE--CCcccCCCcCCCcCEEEEC
Confidence 3467999999999999987765300001233344444666666554 33 22221 23344443 789999984
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 548 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 548 ~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
+. .+.+.-++-+.|+|||.+++--
T Consensus 153 ~~---------~~~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 153 AA---------GPDIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CC---------cccchHHHHHhhCCCcEEEEEE
Confidence 43 3444556777899999999853
No 231
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.72 E-value=0.00018 Score=74.22 Aligned_cols=81 Identities=14% Similarity=0.179 Sum_probs=54.9
Q ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHHc---CCCeEEEEeccccCC
Q 006633 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALER---GVPALIGVMASIRLP 277 (637)
Q Consensus 203 ~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~er---g~~~~~~~~d~~~Lp 277 (637)
..++.+.+.+...++ .+|||||||+|.++..|+++. ++++++ ++.+++.+.++ ..++.+...|+..++
T Consensus 16 ~i~~~i~~~~~~~~~--~~VLEiG~G~G~lt~~L~~~~~~v~~iE~-----d~~~~~~l~~~~~~~~~v~v~~~D~~~~~ 88 (253)
T TIGR00755 16 SVIQKIVEAANVLEG--DVVLEIGPGLGALTEPLLKRAKKVTAIEI-----DPRLAEILRKLLSLYERLEVIEGDALKVD 88 (253)
T ss_pred HHHHHHHHhcCCCCc--CEEEEeCCCCCHHHHHHHHhCCcEEEEEC-----CHHHHHHHHHHhCcCCcEEEEECchhcCC
Confidence 345566666654443 499999999999999999884 455555 44455544433 245778888888877
Q ss_pred CCCCCee---EEEecccc
Q 006633 278 YPSRAFD---MAHCSRCL 292 (637)
Q Consensus 278 fpd~sFD---lV~~s~~L 292 (637)
++ .|| +|+++.-+
T Consensus 89 ~~--~~d~~~~vvsNlPy 104 (253)
T TIGR00755 89 LP--DFPKQLKVVSNLPY 104 (253)
T ss_pred hh--HcCCcceEEEcCCh
Confidence 65 466 88877543
No 232
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.71 E-value=0.00017 Score=72.99 Aligned_cols=145 Identities=14% Similarity=0.170 Sum_probs=85.5
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCC-EEEEcCccccHHHHHHHHHHc----C---CCeEEEEecccc
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----G---VPALIGVMASIR 275 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v-~~vdisp~Dls~a~i~~A~er----g---~~~~~~~~d~~~ 275 (637)
+.+.+.+.-..+...+.+|||...|-|.++...+++|. .++.+ +..+.-++.|.-+ + ..+.+..+|+..
T Consensus 120 ~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~Vitv---Ekdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e 196 (287)
T COG2521 120 LEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITV---EKDPNVLELAKLNPWSRELFEIAIKIILGDAYE 196 (287)
T ss_pred HHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEE---eeCCCeEEeeccCCCCccccccccEEecccHHH
Confidence 34444443333344456999999999999999999975 44444 2222333333311 1 135666677655
Q ss_pred C--CCCCCCeeEEEeccc-cccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHH
Q 006633 276 L--PYPSRAFDMAHCSRC-LIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIAR 352 (637)
Q Consensus 276 L--pfpd~sFDlV~~s~~-L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~ 352 (637)
. .|+|.+||+|+--.- |.+-..-.-+.+.+|++|+|||||.++-...... .++.+ ...+..+.+..+
T Consensus 197 ~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg--~ryrG--------~d~~~gVa~RLr 266 (287)
T COG2521 197 VVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPG--KRYRG--------LDLPKGVAERLR 266 (287)
T ss_pred HHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC--ccccc--------CChhHHHHHHHH
Confidence 4 488999999984211 1011110456789999999999999987642111 11111 112344666677
Q ss_pred Hhceeeecc
Q 006633 353 SLCWKKLIQ 361 (637)
Q Consensus 353 ~l~w~~v~~ 361 (637)
+.+|.++..
T Consensus 267 ~vGF~~v~~ 275 (287)
T COG2521 267 RVGFEVVKK 275 (287)
T ss_pred hcCceeeee
Confidence 788886653
No 233
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=97.71 E-value=0.00011 Score=75.34 Aligned_cols=118 Identities=18% Similarity=0.309 Sum_probs=75.3
Q ss_pred ccCCCCCceeEeeecccchhhhhhhcCCCeEE------EEeccCCCCcchhHHHHhhcccchhh-----cc----ccccC
Q 006633 471 QLAQPGRYRNLLDMNAYLGGFAAALVDDPLWV------MNTVPVEAKINTLGVIYERGLIGTYQ-----NW----CEAMS 535 (637)
Q Consensus 471 ~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~------mnv~~~~~~~~~l~~~~eRgl~~~~~-----~w----ce~~~ 535 (637)
.|++ +..-++|||+||+|=.|..+.++ |-. -+|.-.|-+++||.+...|-.-+-|. -| .|.++
T Consensus 95 ~L~p-~~~m~~lDvaGGTGDiaFril~~-v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp 172 (296)
T KOG1540|consen 95 KLGP-GKGMKVLDVAGGTGDIAFRILRH-VKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP 172 (296)
T ss_pred ccCC-CCCCeEEEecCCcchhHHHHHHh-hccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC
Confidence 4666 66799999999999888877653 111 23333455558998887776321111 13 25666
Q ss_pred CCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHH-HHHHHHHhc
Q 006633 536 TYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDIL-VKIKSITDG 594 (637)
Q Consensus 536 ~yp-~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~-~~~~~~~~~ 594 (637)
|| .+||+.-.. |+. .+--+++..|-|+-|||+|||.|.+=+=.++- ..|+.+...
T Consensus 173 -Fdd~s~D~yTia--fGI-RN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ 229 (296)
T KOG1540|consen 173 -FDDDSFDAYTIA--FGI-RNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQ 229 (296)
T ss_pred -CCCCcceeEEEe--cce-ecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHh
Confidence 87 999985531 221 11235689999999999999999987644433 344444443
No 234
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.70 E-value=6.3e-05 Score=63.43 Aligned_cols=96 Identities=21% Similarity=0.294 Sum_probs=62.9
Q ss_pred eEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHH---hhcc---cchhh-ccccccCCCCCccceeeecccccc
Q 006633 480 NLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIY---ERGL---IGTYQ-NWCEAMSTYPRTYDLIHADSIFSL 552 (637)
Q Consensus 480 ~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~---eRgl---~~~~~-~wce~~~~yp~t~Dl~H~~~lfs~ 552 (637)
+|+|+|||.|++...+.+.+. ..+...|.+++.+..+. +.+. +-.++ |+.+....-+..||++.+++.+..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCC--CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 489999999999999987432 34455555545555444 1121 22232 222211113478999999888775
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 553 YKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 553 ~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
. .-....++-.+.+.|||||++++.
T Consensus 79 ~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 3 235578899999999999999987
No 235
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.69 E-value=0.00045 Score=74.03 Aligned_cols=93 Identities=16% Similarity=0.256 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhccc------CCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCCC--eEE
Q 006633 201 ADAYIDDIGKLINLK------DGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVP--ALI 268 (637)
Q Consensus 201 ~~~~i~~L~~lL~~~------~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~~--~~~ 268 (637)
.-.|+..+.+++... .+...++||||||+|.+...|+.+ .++++|+++..+..++...+...+.. +.+
T Consensus 91 R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~ 170 (321)
T PRK11727 91 RADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRL 170 (321)
T ss_pred HHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEE
Confidence 456777777776421 234568999999999888777765 45667776544444443333221232 333
Q ss_pred EE-eccccCC----CCCCCeeEEEeccccc
Q 006633 269 GV-MASIRLP----YPSRAFDMAHCSRCLI 293 (637)
Q Consensus 269 ~~-~d~~~Lp----fpd~sFDlV~~s~~L~ 293 (637)
.. .+...+. .+.+.||+|+|+.-++
T Consensus 171 ~~~~~~~~i~~~i~~~~~~fDlivcNPPf~ 200 (321)
T PRK11727 171 RLQKDSKAIFKGIIHKNERFDATLCNPPFH 200 (321)
T ss_pred EEccchhhhhhcccccCCceEEEEeCCCCc
Confidence 32 1222211 2467899999998653
No 236
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.67 E-value=5.8e-05 Score=76.86 Aligned_cols=97 Identities=12% Similarity=0.183 Sum_probs=74.4
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhh-ccccccCC----CC-Cccceeeeccccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQ-NWCEAMST----YP-RTYDLIHADSIFS 551 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~-~wce~~~~----yp-~t~Dl~H~~~lfs 551 (637)
.-.|||+|||-|.++..|+..+ -+|..+|.++..++++..+.+..-+. +|= .+.. -. .+||.|-|..|..
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~-~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYR-QATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccch-hhhHHHHHhcCCCccEEEEhhHHH
Confidence 4579999999999999999999 68999999999999998777633222 111 1111 11 5899888866666
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 552 LYKDRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 552 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
.+. +.+.++.+..+.|||||.++++.-
T Consensus 136 Hv~---dp~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 136 HVP---DPESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred ccC---CHHHHHHHHHHHcCCCcEEEEecc
Confidence 444 458899999999999999999853
No 237
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.66 E-value=0.00047 Score=71.30 Aligned_cols=119 Identities=17% Similarity=0.209 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhcccC-CCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHc----CCC--eEEEEe
Q 006633 201 ADAYIDDIGKLINLKD-GSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER----GVP--ALIGVM 271 (637)
Q Consensus 201 ~~~~i~~L~~lL~~~~-g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~er----g~~--~~~~~~ 271 (637)
.+++++.+.+.+.... .....+||+|||+|..+..|+.. +.+++.+ |.+++++..|.++ ... +.+...
T Consensus 130 TEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~Ai---D~S~~Ai~La~eN~qr~~l~g~i~v~~~ 206 (328)
T KOG2904|consen 130 TEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAI---DVSKAAIKLAKENAQRLKLSGRIEVIHN 206 (328)
T ss_pred HHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEE---eccHHHHHHHHHHHHHHhhcCceEEEec
Confidence 4666777766665322 12337999999999999888875 4444444 6677777766654 121 222211
Q ss_pred ----c-cccCCCCCCCeeEEEeccccccCCc------C------------------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 272 ----A-SIRLPYPSRAFDMAHCSRCLIPWGQ------Y------------------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 272 ----d-~~~Lpfpd~sFDlV~~s~~L~h~~~------~------------------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+ ....+...+.+|+++|+.-.+.-.+ + ....++.-+.|.|+|||.+++...
T Consensus 207 ~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 207 IMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 1 1223456789999999764422110 0 111356677899999999999853
No 238
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.66 E-value=0.00016 Score=69.76 Aligned_cols=116 Identities=15% Similarity=0.041 Sum_probs=82.8
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCC-----C
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP-----Y 278 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lp-----f 278 (637)
..+.+...+... ++.-|||+|.|||.++..++++++.-.++...+.+......-.+......+..+|+..+. +
T Consensus 36 lA~~M~s~I~pe--sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~ 113 (194)
T COG3963 36 LARKMASVIDPE--SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEH 113 (194)
T ss_pred HHHHHHhccCcc--cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhc
Confidence 334444444433 445899999999999999999965433443345566666665566666667777766554 5
Q ss_pred CCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 279 PSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 279 pd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
++..||.|+|..-+..++....-++++.+...|++||.++...
T Consensus 114 ~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 114 KGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred CCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 6788999999766655654345678999999999999998864
No 239
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.65 E-value=3.4e-05 Score=80.11 Aligned_cols=97 Identities=23% Similarity=0.268 Sum_probs=71.6
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCCcC
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQY 298 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~ 298 (637)
+..+||+|||.|-.+..- -....++. |+....+.-++..+.. ....+|+..+|+.+.+||.+++..++||+...
T Consensus 46 gsv~~d~gCGngky~~~~--p~~~~ig~---D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVN--PLCLIIGC---DLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred cceeeecccCCcccCcCC--Ccceeeec---chhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 348999999999642111 12233444 6666666556544432 56667899999999999999999999998753
Q ss_pred -CHHHHHHHHHhcccCCeEEEEEe
Q 006633 299 -ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 299 -d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
....+++|+.|+|||||...+..
T Consensus 120 ~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 120 ERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEE
Confidence 45679999999999999988864
No 240
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.64 E-value=0.00014 Score=74.01 Aligned_cols=119 Identities=18% Similarity=0.274 Sum_probs=78.8
Q ss_pred eeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cccchhhccc-cccCCCC-Cccceeeeccccc
Q 006633 479 RNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWC-EAMSTYP-RTYDLIHADSIFS 551 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wc-e~~~~yp-~t~Dl~H~~~lfs 551 (637)
.+|||+|||.|.++.+|++. +- .+++.+|.++.++..+.++ |+- -++-.+ ..+..++ ..||+|-++--|.
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPD--ARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccCcCCceeEEEECCCCC
Confidence 47999999999999999875 22 2566667666677666543 441 111112 2334454 7899998865544
Q ss_pred cCC------CCc-----------------CHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCceeE
Q 006633 552 LYK------DRC-----------------EMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGR 600 (637)
Q Consensus 552 ~~~------~~c-----------------~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~ 600 (637)
... ... ....++-++-|+|+|||.+++.........+++++++..+...
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADV 237 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCce
Confidence 211 000 0236778899999999999998766666778888877777544
No 241
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.63 E-value=0.00018 Score=76.68 Aligned_cols=100 Identities=15% Similarity=0.158 Sum_probs=66.5
Q ss_pred CCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCCC--eEEEEeccccCCCCCCCeeEEEecccc
Q 006633 218 SIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGVP--ALIGVMASIRLPYPSRAFDMAHCSRCL 292 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~~--~~~~~~d~~~Lpfpd~sFDlV~~s~~L 292 (637)
..++|||||||+|.++..-++.| |.+++. .++..-..+.++.++.. +.+..+..+.+-+|-...|+|++-+.-
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~--S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEA--SSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEec--hHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 35599999999999998888874 455554 35555555566666654 455555555555557789999996544
Q ss_pred ccCC-cCCHHHHHHHHHhcccCCeEEEE
Q 006633 293 IPWG-QYADGLYLIEVDRVLRPGGYWIL 319 (637)
Q Consensus 293 ~h~~-~~d~~~~L~ei~RvLKPGG~Lvl 319 (637)
.-+. +.-...+|..=.+.|+|||.++=
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 2111 11344556666799999998754
No 242
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.62 E-value=5.4e-05 Score=76.88 Aligned_cols=114 Identities=21% Similarity=0.154 Sum_probs=75.6
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhccccccC--------CCCCccceeeecc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMS--------TYPRTYDLIHADS 548 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~--------~yp~t~Dl~H~~~ 548 (637)
..|.++|+|||.| +|+..+.-- --+|+.+|-++.||+++.+. -.-+||+=-.+++ -=+++-|||-|.-
T Consensus 33 ~h~~a~DvG~G~G-qa~~~iae~--~k~VIatD~s~~mL~~a~k~-~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 33 GHRLAWDVGTGNG-QAARGIAEH--YKEVIATDVSEAMLKVAKKH-PPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred CcceEEEeccCCC-cchHHHHHh--hhhheeecCCHHHHHHhhcC-CCcccccCCccccccccccccCCCcceeeehhhh
Confidence 4669999999999 777765542 35788999998999966544 4344543333333 2368999865410
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCc-EEEE---EeCHHHHHHHHHHHhcCCce
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEG-SVII---RDDVDILVKIKSITDGMEWE 598 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG-~~i~---~d~~~~~~~~~~~~~~~~W~ 598 (637)
- -|=|+++..+-++-|||||.| .+.+ +|+.-...++..+..+++|+
T Consensus 109 a----~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 109 A----VHWFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred h----HHhhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 0 123899999999999999988 2222 44444555666666666664
No 243
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=97.62 E-value=0.0002 Score=75.28 Aligned_cols=135 Identities=16% Similarity=0.227 Sum_probs=86.7
Q ss_pred eeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cc---cchh-hccccccCCCC-Cccceeeecc
Q 006633 479 RNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL---IGTY-QNWCEAMSTYP-RTYDLIHADS 548 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~-~~wce~~~~yp-~t~Dl~H~~~ 548 (637)
.+|||+|||.|.++.+|+.. +- .+|+.+|.+...+.++.+. |+ +-.+ .||.+. .+ ..||+|-++-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~--~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~---~~~~~fDlIvsNP 190 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPN--AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP---LAGQKIDIIVSNP 190 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc---CcCCCccEEEECC
Confidence 57999999999999999864 21 2566777776788777664 43 2233 255543 34 3799987751
Q ss_pred -------------ccccCCCC---------cCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHh-cCCceeEEeccC
Q 006633 549 -------------IFSLYKDR---------CEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITD-GMEWEGRIADHE 605 (637)
Q Consensus 549 -------------lfs~~~~~---------c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~-~~~W~~~~~~~e 605 (637)
++...... -.+..++-+.-++|+|||++++--..+.-..+.++.. ...|..... ..
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~-~~ 269 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVEN-GR 269 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEE-ec
Confidence 11100000 1345788899999999999999766666667777766 456743221 22
Q ss_pred CCCCCcceEEEEEec
Q 006633 606 NGPRQREKILFANKK 620 (637)
Q Consensus 606 ~~~~~~~~~l~~~K~ 620 (637)
| -.+.++++++++.
T Consensus 270 D-~~g~~R~~~~~~~ 283 (284)
T TIGR00536 270 D-LNGKERVVLGFYH 283 (284)
T ss_pred C-CCCCceEEEEEec
Confidence 2 2256888888753
No 244
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=97.61 E-value=0.00017 Score=72.41 Aligned_cols=98 Identities=22% Similarity=0.279 Sum_probs=65.4
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhc----c---cchhh-ccccccCCC-CCccceeeecc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG----L---IGTYQ-NWCEAMSTY-PRTYDLIHADS 548 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg----l---~~~~~-~wce~~~~y-p~t~Dl~H~~~ 548 (637)
...|||+|||.|.++..+.+..--.-.++.+|.+++.+..+.++- + +-+++ |.. .+. + +.+||+|.+..
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~-~~~~~~D~I~~~~ 129 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAE-ALP-FPDNSFDAVTIAF 129 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccc-cCC-CCCCCccEEEEec
Confidence 467999999999998888654200124555666656777666652 2 22222 211 111 3 37899998865
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
++. +..+.+.+|-++.++|+|||.+++.+
T Consensus 130 ~l~---~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 130 GLR---NVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ccc---cCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 543 34567899999999999999999864
No 245
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.61 E-value=0.00011 Score=73.77 Aligned_cols=101 Identities=10% Similarity=0.104 Sum_probs=71.7
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccch----hhccccccCCCCCccceeeecccccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGT----YQNWCEAMSTYPRTYDLIHADSIFSL 552 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~----~~~wce~~~~yp~t~Dl~H~~~lfs~ 552 (637)
+..+|||+|||.|.++.+|++++. .|..+|.++.++..+.++.-... ..-.+..+...|.+||+|=+..++..
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIH 131 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHh
Confidence 467999999999999999988754 56777888789988887642111 11112333344588999877666544
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 553 YKDRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 553 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
+. ..++..++.++.|+++|++++.+...
T Consensus 132 ~~-~~~~~~~l~~i~~~~~~~~~i~~~~~ 159 (219)
T TIGR02021 132 YP-ASDMAKALGHLASLTKERVIFTFAPK 159 (219)
T ss_pred CC-HHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 32 34567899999999999888887643
No 246
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.60 E-value=1.6e-05 Score=70.06 Aligned_cols=94 Identities=21% Similarity=0.227 Sum_probs=63.2
Q ss_pred EeeecccchhhhhhhcCCC--eEEEEeccCCCCcchhHHHHhhccc-c-hhhccccccCCCC---CccceeeeccccccC
Q 006633 481 LLDMNAYLGGFAAALVDDP--LWVMNTVPVEAKINTLGVIYERGLI-G-TYQNWCEAMSTYP---RTYDLIHADSIFSLY 553 (637)
Q Consensus 481 vlD~~~g~ggfaa~l~~~~--v~~mnv~~~~~~~~~l~~~~eRgl~-~-~~~~wce~~~~yp---~t~Dl~H~~~lfs~~ 553 (637)
|||+|||.|....+|.+.- ---..+..+|.++.+|..+.++.-- + -.+--|..+...| .+||+|=+.+.+-.+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999987641 1125777888888999999988831 1 1111123333333 799999997663333
Q ss_pred CCCcCHHHHHHHHhhcccCCc
Q 006633 554 KDRCEMEDVLLEMDRILRPEG 574 (637)
Q Consensus 554 ~~~c~~~~~l~e~dRiLrPgG 574 (637)
-+.-.++.+|-++-++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 555678899999999999998
No 247
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.60 E-value=0.00018 Score=75.81 Aligned_cols=121 Identities=19% Similarity=0.258 Sum_probs=77.8
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccCCCC-Cccceeeec
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP-RTYDLIHAD 547 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~~yp-~t~Dl~H~~ 547 (637)
..+|||+|||+|.++.+|++. +- .+|+.+|.++..+..+.+. |+ +-.++ |+ +...| ..||+|-++
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~--~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~---~~~~~~~~fD~Iv~N 196 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPE--AEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDL---FAALPGRKYDLIVSN 196 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch---hhccCCCCccEEEEC
Confidence 357999999999999999865 21 2566777777787777654 55 22232 33 23345 589998886
Q ss_pred ccccc------------CC---------CCc-CHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCceeEEecc
Q 006633 548 SIFSL------------YK---------DRC-EMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADH 604 (637)
Q Consensus 548 ~lfs~------------~~---------~~c-~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~ 604 (637)
-=+.. +. +.. ....++-++-++|+|||++++--..+. ..+++++....|....+++
T Consensus 197 PPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~~~~~ 274 (284)
T TIGR03533 197 PPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWLEFEN 274 (284)
T ss_pred CCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCceeeecC
Confidence 21110 00 011 124788899999999999998654433 6788887766554444443
No 248
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.58 E-value=0.00018 Score=76.72 Aligned_cols=111 Identities=21% Similarity=0.285 Sum_probs=71.7
Q ss_pred eeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccCCCC-Cccceeeecc
Q 006633 479 RNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP-RTYDLIHADS 548 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~~yp-~t~Dl~H~~~ 548 (637)
.+|||+|||.|.++.+|+.. +- .+|+.+|.++..+..+.+. |+ +-+++ |+. ...| .+||+|-++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~--~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~---~~l~~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD--AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLF---AALPGRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchh---hhCCCCCccEEEECC
Confidence 57999999999999999764 32 4567778777788777654 44 33333 332 3334 6899998862
Q ss_pred cccc------------CC---------CCc-CHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcC
Q 006633 549 IFSL------------YK---------DRC-EMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGM 595 (637)
Q Consensus 549 lfs~------------~~---------~~c-~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~ 595 (637)
=+.. +. +.. ....++-+.-++|+|||.+++--..+ ...+.++....
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~ 277 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDV 277 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhC
Confidence 1110 00 001 13478889999999999999953332 33566666544
No 249
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.58 E-value=8.1e-05 Score=74.03 Aligned_cols=117 Identities=20% Similarity=0.272 Sum_probs=74.7
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcc----hhHHHHhhcccchhhccccccCC--CCCccceeeeccccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKIN----TLGVIYERGLIGTYQNWCEAMST--YPRTYDLIHADSIFS 551 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~----~l~~~~eRgl~~~~~~wce~~~~--yp~t~Dl~H~~~lfs 551 (637)
.-.|||+|||.|--|-+|++++.=| ...|.+.. ...++-++||- ++-++..+.+ +|..||+|.+..+|-
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~V---tAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I~st~v~~ 105 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFDV---TAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFIVSTVVFM 105 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-EE---EEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEEEEESSGG
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCeE---EEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEEEEEEEec
Confidence 3489999999999999999998733 33444432 33444556773 3333333433 468999999877775
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEE---e--------CHHHH---HHHHHHHhcCCceeEEe
Q 006633 552 LYKDRCEMEDVLLEMDRILRPEGSVIIR---D--------DVDIL---VKIKSITDGMEWEGRIA 602 (637)
Q Consensus 552 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~---d--------~~~~~---~~~~~~~~~~~W~~~~~ 602 (637)
..+ +-.++.++-.|-.-|+|||+++|- + +.+.+ ..+..... .|++..+
T Consensus 106 fL~-~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y 167 (192)
T PF03848_consen 106 FLQ-RELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKY 167 (192)
T ss_dssp GS--GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEE
T ss_pred cCC-HHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEE
Confidence 554 558899999999999999999883 1 12233 34555555 4998754
No 250
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.58 E-value=0.00013 Score=65.43 Aligned_cols=94 Identities=19% Similarity=0.172 Sum_probs=60.5
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHh----hccc--chhh-ccccccCCCCCccceeeeccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYE----RGLI--GTYQ-NWCEAMSTYPRTYDLIHADSI 549 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~e----Rgl~--~~~~-~wce~~~~yp~t~Dl~H~~~l 549 (637)
..+|||+|||.|.++.++++. +- .+|+.+|.++.++..+.+ .|+- -+.. |.-+.+...+..||.|=+.+.
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPN--GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCC--ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc
Confidence 459999999999999999775 21 456666766666666532 2331 1111 100111122468998765332
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
. ..++.++-++-|+|+|||++++.
T Consensus 98 ~------~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 98 G------GLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred c------hhHHHHHHHHHHHcCCCCEEEEE
Confidence 2 23468999999999999999985
No 251
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.56 E-value=0.00016 Score=74.75 Aligned_cols=127 Identities=14% Similarity=0.132 Sum_probs=84.3
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cccchhh-ccccccCC-CCCccceeeecccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GLIGTYQ-NWCEAMST-YPRTYDLIHADSIF 550 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~-~wce~~~~-yp~t~Dl~H~~~lf 550 (637)
..+|||+|||+|.++-+|++. +- .+|+.+|.++..+..+.+. |+ .+++ |+.+.+.. +...||+|=+|==+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~--~~v~~vDis~~al~~A~~N~~~~~~-~~~~~D~~~~l~~~~~~~fDlVv~NPPy 163 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDG--IELHAADIDPAAVRCARRNLADAGG-TVHEGDLYDALPTALRGRVDILAANAPY 163 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCC-EEEEeechhhcchhcCCCEeEEEECCCC
Confidence 347999999999999888653 21 2456667766777766543 32 2222 44333221 23579998776433
Q ss_pred cc-------------CCCCcC----------HHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCceeEEeccCCC
Q 006633 551 SL-------------YKDRCE----------MEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENG 607 (637)
Q Consensus 551 s~-------------~~~~c~----------~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e~~ 607 (637)
.. +..+.. +..++....++|+|||.+++--..+....+..+++...|+..+..|++-
T Consensus 164 ~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 164 VPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEEL 243 (251)
T ss_pred CCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEcccc
Confidence 21 111111 3477888889999999999976666778899999989999998888764
No 252
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.56 E-value=0.00012 Score=79.65 Aligned_cols=98 Identities=18% Similarity=0.248 Sum_probs=72.8
Q ss_pred EEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHc-CCCeEEEEeccccCCCCCCCeeEEEeccccccCC
Q 006633 221 TAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER-GVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (637)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~er-g~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~ 296 (637)
.++|+|||.|....+++.. ++++++..+.............. .....+...+....||+++.||.+.+..+..|.+
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~ 192 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAP 192 (364)
T ss_pred cccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecccCC
Confidence 7999999999888887765 45555544333332222211111 1123456678888999999999999999998888
Q ss_pred cCCHHHHHHHHHhcccCCeEEEEE
Q 006633 297 QYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 297 ~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
+...+++|+.|+++|||+++..
T Consensus 193 --~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 193 --DLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred --cHHHHHHHHhcccCCCceEEeH
Confidence 7999999999999999999986
No 253
>PTZ00146 fibrillarin; Provisional
Probab=97.56 E-value=0.00041 Score=73.18 Aligned_cols=95 Identities=17% Similarity=0.186 Sum_probs=61.4
Q ss_pred ceeEeeecccchhhhhhhcCC-----CeEEEEeccCCCCcchhHHHHhh-cccchhhccccccCCC---CCccceeeecc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-----PLWVMNTVPVEAKINTLGVIYER-GLIGTYQNWCEAMSTY---PRTYDLIHADS 548 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-----~v~~mnv~~~~~~~~~l~~~~eR-gl~~~~~~wce~~~~y---p~t~Dl~H~~~ 548 (637)
-.+|||+|||.|+|..+|++. .|+.+-+.|.-.. +++.++.+| +++.+..|-+... .| +.++|+|=++-
T Consensus 133 G~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~-dLl~~ak~r~NI~~I~~Da~~p~-~y~~~~~~vDvV~~Dv 210 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGR-DLTNMAKKRPNIVPIIEDARYPQ-KYRMLVPMVDVIFADV 210 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHH-HHHHHhhhcCCCEEEECCccChh-hhhcccCCCCEEEEeC
Confidence 468999999999999999765 2566554432221 466766665 5555555544321 12 25789876543
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
. + .=....+++|+.|+|||||+|+|.
T Consensus 211 a----~-pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 211 A----Q-PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred C----C-cchHHHHHHHHHHhccCCCEEEEE
Confidence 2 1 112235667999999999999994
No 254
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.55 E-value=0.00047 Score=69.40 Aligned_cols=118 Identities=17% Similarity=0.171 Sum_probs=77.5
Q ss_pred CEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCC---CCCeeEEEeccccccC
Q 006633 220 RTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP---SRAFDMAHCSRCLIPW 295 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfp---d~sFDlV~~s~~L~h~ 295 (637)
-++|||||=+......-... .|+.+|+.+. ...+...|....|.| ++.||+|.++.+|..+
T Consensus 53 lrlLEVGals~~N~~s~~~~fdvt~IDLns~---------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfV 117 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWFDVTRIDLNSQ---------------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFV 117 (219)
T ss_pred ceEEeecccCCCCcccccCceeeEEeecCCC---------------CCCceeeccccCCCCCCcccceeEEEEEEEEeeC
Confidence 58999999866543222111 4666666332 112345566666654 6789999999999776
Q ss_pred CcC-CHHHHHHHHHhcccCCeE-----EEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeeccc
Q 006633 296 GQY-ADGLYLIEVDRVLRPGGY-----WILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQK 362 (637)
Q Consensus 296 ~~~-d~~~~L~ei~RvLKPGG~-----Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~~~ 362 (637)
+.. ....++..+.+.|+|+|. |+++.|.. +.....+ ...+.+..+.+.+||..+..+
T Consensus 118 P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~--Cv~NSRy--------~~~~~l~~im~~LGf~~~~~~ 180 (219)
T PF11968_consen 118 PDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP--CVTNSRY--------MTEERLREIMESLGFTRVKYK 180 (219)
T ss_pred CCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch--Hhhcccc--------cCHHHHHHHHHhCCcEEEEEE
Confidence 632 556899999999999999 99987732 1111111 113457778899999887653
No 255
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.55 E-value=0.00028 Score=70.90 Aligned_cols=100 Identities=13% Similarity=0.150 Sum_probs=67.6
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhc----ccchhhccccccCCCCCccceeeecccccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG----LIGTYQNWCEAMSTYPRTYDLIHADSIFSL 552 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg----l~~~~~~wce~~~~yp~t~Dl~H~~~lfs~ 552 (637)
...+|||+|||.|.++.+|++... .|..+|.+++++..+.++- +-..++-....+...+.+||+|.+..+|..
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 357999999999999999987754 3677787778888887652 211111111223333588999999877754
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 553 YKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 553 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
+. .-.+..++-++-|++++++.+.+..
T Consensus 140 ~~-~~~~~~~l~~l~~~~~~~~~i~~~~ 166 (230)
T PRK07580 140 YP-QEDAARMLAHLASLTRGSLIFTFAP 166 (230)
T ss_pred CC-HHHHHHHHHHHHhhcCCeEEEEECC
Confidence 43 2356788889999886666555443
No 256
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.55 E-value=0.00016 Score=74.61 Aligned_cols=92 Identities=23% Similarity=0.415 Sum_probs=73.2
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhccc-chhhccccccCCCCCccceeeeccccccCCC
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLI-GTYQNWCEAMSTYPRTYDLIHADSIFSLYKD 555 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~-~~~~~wce~~~~yp~t~Dl~H~~~lfs~~~~ 555 (637)
+..++||+|||-|+.-+.|+.. .-+|..++.+..|.....+||.- =...+|-+. +..||+|-|-+|. +
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~----~~~fDvIscLNvL----D 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL---FKEVYATEASPPMRWRLSKKGFTVLDIDDWQQT----DFKFDVISCLNVL----D 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh---cceEEeecCCHHHHHHHHhCCCeEEehhhhhcc----CCceEEEeehhhh----h
Confidence 6788999999999999999652 33466777887899999999992 122246532 4679999996666 7
Q ss_pred CcCHH-HHHHHHhhcccCCcEEEEE
Q 006633 556 RCEME-DVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 556 ~c~~~-~~l~e~dRiLrPgG~~i~~ 579 (637)
||+-+ .+|-+|-+.|+|+|.+|+.
T Consensus 163 Rc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 163 RCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred ccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 89988 7888999999999999996
No 257
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.54 E-value=8.5e-05 Score=74.72 Aligned_cols=93 Identities=16% Similarity=0.065 Sum_probs=56.8
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc--cchhh-ccccccCCCCCccceeeeccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTYPRTYDLIHADSI 549 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~-~wce~~~~yp~t~Dl~H~~~l 549 (637)
....|||+|||+|.+++.|++..=-.-.|+.+|..+..+..+.++ |+ +-+.+ |..+.+.. ...||+|++++.
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~ 155 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP-LAPYDRIYVTAA 155 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc-cCCCCEEEEcCC
Confidence 356899999999999999876410001234445555666655443 54 22222 22222111 268999998432
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
.+.+.-++-+.|+|||.+|+-
T Consensus 156 ---------~~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 156 ---------GPKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred ---------cccccHHHHHhcCcCcEEEEE
Confidence 344556678899999999984
No 258
>PRK04148 hypothetical protein; Provisional
Probab=97.53 E-value=0.00047 Score=64.73 Aligned_cols=101 Identities=14% Similarity=0.099 Sum_probs=66.9
Q ss_pred HHHHHHhcccCCCCCEEEEECCCCch-HHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCC-CCCe
Q 006633 206 DDIGKLINLKDGSIRTAIDTGCGVAS-WGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP-SRAF 283 (637)
Q Consensus 206 ~~L~~lL~~~~g~~r~VLDIGCGtG~-~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfp-d~sF 283 (637)
+.|.+.++.. .+.++||||||+|. ++..|++.|..++.+ |+++..++.+.+.+.. +...|...-.+. -..+
T Consensus 6 ~~l~~~~~~~--~~~kileIG~GfG~~vA~~L~~~G~~ViaI---Di~~~aV~~a~~~~~~--~v~dDlf~p~~~~y~~a 78 (134)
T PRK04148 6 EFIAENYEKG--KNKKIVELGIGFYFKVAKKLKESGFDVIVI---DINEKAVEKAKKLGLN--AFVDDLFNPNLEIYKNA 78 (134)
T ss_pred HHHHHhcccc--cCCEEEEEEecCCHHHHHHHHHCCCEEEEE---ECCHHHHHHHHHhCCe--EEECcCCCCCHHHHhcC
Confidence 3344444333 34589999999995 888999888777666 7777788888877654 444454443322 3568
Q ss_pred eEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 284 DMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 284 DlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
|+|++.+ +-. +....+.++.+-+ |.-+++.
T Consensus 79 ~liysir---pp~--el~~~~~~la~~~--~~~~~i~ 108 (134)
T PRK04148 79 KLIYSIR---PPR--DLQPFILELAKKI--NVPLIIK 108 (134)
T ss_pred CEEEEeC---CCH--HHHHHHHHHHHHc--CCCEEEE
Confidence 9999987 333 5666777777655 4555554
No 259
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.53 E-value=0.00023 Score=71.60 Aligned_cols=135 Identities=15% Similarity=0.122 Sum_probs=70.0
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhccccc------cCCC-CCccceeeecccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEA------MSTY-PRTYDLIHADSIF 550 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~------~~~y-p~t~Dl~H~~~lf 550 (637)
..+|||+|||+|+|...|+++.--.-.|+.+|..+ +.+. .|+.-+..|..+. ...+ +.+||+|-++...
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~~~---~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~ 127 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MDPI---VGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAP 127 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-ccCC---CCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCC
Confidence 45899999999999888866410001223333331 1110 1221111122211 0123 3789999886432
Q ss_pred ccCCCC--------cCHHHHHHHHhhcccCCcEEEEEeC-----HHHHHHHHHHHhcCCceeEEeccCCCCCCcceEEEE
Q 006633 551 SLYKDR--------CEMEDVLLEMDRILRPEGSVIIRDD-----VDILVKIKSITDGMEWEGRIADHENGPRQREKILFA 617 (637)
Q Consensus 551 s~~~~~--------c~~~~~l~e~dRiLrPgG~~i~~d~-----~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~ 617 (637)
...... ...+.+|-|+-|+|+|||.|++..- .+.+..+++....... ..+...-....|..+||
T Consensus 128 ~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~---~Kp~ssr~~s~e~~~~~ 204 (209)
T PRK11188 128 NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKV---RKPDSSRARSREVYIVA 204 (209)
T ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEE---ECCccccccCceeEEEe
Confidence 211111 1135789999999999999999532 2333333333333222 22333333457888888
Q ss_pred Ee
Q 006633 618 NK 619 (637)
Q Consensus 618 ~K 619 (637)
+.
T Consensus 205 ~~ 206 (209)
T PRK11188 205 TG 206 (209)
T ss_pred ec
Confidence 53
No 260
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.52 E-value=9.4e-05 Score=73.20 Aligned_cols=99 Identities=19% Similarity=0.236 Sum_probs=72.5
Q ss_pred hhccCCCCCceeEeeecccchhhhhhhcC-CCeEEEEeccCCCCcchhHHHHhhcccchhhccccccCCCC-Cccceeee
Q 006633 469 DYQLAQPGRYRNLLDMNAYLGGFAAALVD-DPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP-RTYDLIHA 546 (637)
Q Consensus 469 ~~~l~~~~~~r~vlD~~~g~ggfaa~l~~-~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~yp-~t~Dl~H~ 546 (637)
..-+.+ .-.|||+|||.|.+-++|.+ ++|-+ ..++.....+....+||+-=+-+|.=+.+..|| .+||.+=.
T Consensus 8 ~~~I~p---gsrVLDLGCGdG~LL~~L~~~k~v~g---~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIl 81 (193)
T PF07021_consen 8 AEWIEP---GSRVLDLGCGDGELLAYLKDEKQVDG---YGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVIL 81 (193)
T ss_pred HHHcCC---CCEEEecCCCchHHHHHHHHhcCCeE---EEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEeh
Confidence 333555 57899999999999999987 56644 344555567899999999644458889999998 99998765
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 547 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 547 ~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
+...... -..+.+|.||-|| |...|++
T Consensus 82 sqtLQ~~---~~P~~vL~EmlRV---gr~~IVs 108 (193)
T PF07021_consen 82 SQTLQAV---RRPDEVLEEMLRV---GRRAIVS 108 (193)
T ss_pred HhHHHhH---hHHHHHHHHHHHh---cCeEEEE
Confidence 3333222 2346899999666 6688887
No 261
>PLN02476 O-methyltransferase
Probab=97.52 E-value=0.00058 Score=71.73 Aligned_cols=97 Identities=13% Similarity=0.110 Sum_probs=63.7
Q ss_pred CCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCC--CeEEEEecccc-CC-C----CCCCeeE
Q 006633 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIR-LP-Y----PSRAFDM 285 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~-Lp-f----pd~sFDl 285 (637)
.++|||||+|+|..+.+++.. .+++++..+.....+.. ...+.|. .+.+..+++.. |+ + ..++||+
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~-n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKR-YYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 349999999999999999874 24556664422222222 2223344 36666666533 22 1 2368999
Q ss_pred EEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 286 AHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 286 V~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
|+.-. ... +...+++.+.++|+|||.+++..
T Consensus 198 VFIDa----~K~-~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 198 AFVDA----DKR-MYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred EEECC----CHH-HHHHHHHHHHHhcCCCcEEEEec
Confidence 99743 333 56778999999999999999873
No 262
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=97.52 E-value=0.00036 Score=76.98 Aligned_cols=138 Identities=10% Similarity=0.141 Sum_probs=88.3
Q ss_pred eeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cc-cchhh-ccccccCCCCCccceeeeccccc
Q 006633 479 RNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GL-IGTYQ-NWCEAMSTYPRTYDLIHADSIFS 551 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl-~~~~~-~wce~~~~yp~t~Dl~H~~~lfs 551 (637)
.+|||+|||+|.++.+|+.. +- .+|..+|.++.+++.+.+. |+ +.+++ ||.+...+-...||+|-+|-=+-
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~--a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPD--AFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 37999999999999888753 32 3566777777888877664 32 23333 54432111125799988854321
Q ss_pred cC---------------------CCCc-CHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCceeEEeccCCCCC
Q 006633 552 LY---------------------KDRC-EMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPR 609 (637)
Q Consensus 552 ~~---------------------~~~c-~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~ 609 (637)
.. .+.- .+..++-+.-+.|+|||++++--..+....+++++++..|.....-.+ -.
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kD--l~ 408 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPD--LA 408 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEc--CC
Confidence 00 0110 123677777899999999998666677788999888888865422211 12
Q ss_pred CcceEEEEEec
Q 006633 610 QREKILFANKK 620 (637)
Q Consensus 610 ~~~~~l~~~K~ 620 (637)
+.++++++++.
T Consensus 409 G~dR~v~~~~~ 419 (423)
T PRK14966 409 GLDRVTLGKYM 419 (423)
T ss_pred CCcEEEEEEEh
Confidence 56889988763
No 263
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.52 E-value=0.0001 Score=72.77 Aligned_cols=89 Identities=20% Similarity=0.290 Sum_probs=61.0
Q ss_pred eeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhccccccCCCC-CccceeeeccccccCCCCc
Q 006633 479 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP-RTYDLIHADSIFSLYKDRC 557 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~yp-~t~Dl~H~~~lfs~~~~~c 557 (637)
.+|||+|||.|.+..+|.+..- .++..+|.++.++..+.++|+--+..|..+.+..++ ++||+|-+++.|....
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~--- 89 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR--- 89 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc---
Confidence 4799999999999999975421 134555666678888888876222223333344465 8999999988776443
Q ss_pred CHHHHHHHHhhcccC
Q 006633 558 EMEDVLLEMDRILRP 572 (637)
Q Consensus 558 ~~~~~l~e~dRiLrP 572 (637)
+...+|-||-|++++
T Consensus 90 d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 90 NPEEILDEMLRVGRH 104 (194)
T ss_pred CHHHHHHHHHHhCCe
Confidence 457888888777654
No 264
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.00098 Score=65.76 Aligned_cols=89 Identities=19% Similarity=0.107 Sum_probs=55.7
Q ss_pred CCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 006633 218 SIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h 294 (637)
.+++|+|+|||||.++...+-. .|.++++++..+ +...+.+.+.+..+.+...|..+.. ..||.++.+.-+--
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~-ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG~ 120 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEAL-EIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFGS 120 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHH-HHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCCcc
Confidence 4558999999999887766655 477787766322 2333344444457888888877754 55899998875532
Q ss_pred CCcCCHHHHHHHHHhc
Q 006633 295 WGQYADGLYLIEVDRV 310 (637)
Q Consensus 295 ~~~~d~~~~L~ei~Rv 310 (637)
+....+..++....++
T Consensus 121 ~~rhaDr~Fl~~Ale~ 136 (198)
T COG2263 121 QRRHADRPFLLKALEI 136 (198)
T ss_pred ccccCCHHHHHHHHHh
Confidence 2221233344444444
No 265
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.51 E-value=0.002 Score=63.89 Aligned_cols=129 Identities=12% Similarity=0.022 Sum_probs=69.9
Q ss_pred eecCCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCC
Q 006633 188 FSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGV 264 (637)
Q Consensus 188 ~~Fpg~g~~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~ 264 (637)
+..|.+....|.. +...+.+..++... -.+.++||++||+|.++..++.++ ++.++.++..+.... +.+...+.
T Consensus 21 l~~p~~~~~rpt~-~~vrea~f~~l~~~-~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~-~N~~~~~~ 97 (189)
T TIGR00095 21 LKLPPGGSTRPTT-RVVRELFFNILRPE-IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLK-ENLALLKS 97 (189)
T ss_pred cCCCCCCCCCCch-HHHHHHHHHHHHHh-cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHhCC
Confidence 3344443333332 33334455554311 123489999999999999999985 445555432222111 11222233
Q ss_pred --CeEEEEecccc-CC-C-CC-CCeeEEEeccccccCCcCCHHHHHHHHH--hcccCCeEEEEEeC
Q 006633 265 --PALIGVMASIR-LP-Y-PS-RAFDMAHCSRCLIPWGQYADGLYLIEVD--RVLRPGGYWILSGP 322 (637)
Q Consensus 265 --~~~~~~~d~~~-Lp-f-pd-~sFDlV~~s~~L~h~~~~d~~~~L~ei~--RvLKPGG~Lvls~p 322 (637)
.+.+...|... +. + .. ..||+|+.-.-+ .......++..+. .+|+++|.+++..+
T Consensus 98 ~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy---~~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 98 GEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPF---FNGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred cccEEEEehhHHHHHHHhhccCCCceEEEECcCC---CCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 35667777633 22 1 12 247888876633 2213445555553 47999999888754
No 266
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.50 E-value=0.00063 Score=68.44 Aligned_cols=96 Identities=17% Similarity=0.204 Sum_probs=63.2
Q ss_pred CEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCC--CeEEEEecccc-CC-----CCCCCeeEE
Q 006633 220 RTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIR-LP-----YPSRAFDMA 286 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~-Lp-----fpd~sFDlV 286 (637)
++|||||+++|.-+.+|++. .++++++++.... ...+...+.+. .+.+..+++.. ++ .+.+.||+|
T Consensus 47 k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~-~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V 125 (205)
T PF01596_consen 47 KRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAE-IARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV 125 (205)
T ss_dssp SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHH-HHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred ceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHH-HHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence 48999999999999999975 3555555442221 11122223343 46777776543 22 124689999
Q ss_pred EeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 287 HCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 287 ~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+.-. ... +...++..+.++|+|||.+++..
T Consensus 126 FiDa----~K~-~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 126 FIDA----DKR-NYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEES----TGG-GHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEcc----ccc-chhhHHHHHhhhccCCeEEEEcc
Confidence 9743 333 66778999999999999999984
No 267
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.48 E-value=0.0018 Score=65.78 Aligned_cols=93 Identities=15% Similarity=0.233 Sum_probs=63.6
Q ss_pred CCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHH----cCCC--eEEEE-eccccC-C-CCCCCee
Q 006633 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALE----RGVP--ALIGV-MASIRL-P-YPSRAFD 284 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~e----rg~~--~~~~~-~d~~~L-p-fpd~sFD 284 (637)
.++|||||.+.|.-+.+|+.. .++++++++ .+.+.|++ .++. +.+.. +++.+. . ...++||
T Consensus 60 ~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~-----e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fD 134 (219)
T COG4122 60 PKRILEIGTAIGYSALWMALALPDDGRLTTIERDE-----ERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFD 134 (219)
T ss_pred CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCH-----HHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCcc
Confidence 448999999999999999875 255565544 44444443 2432 33444 243221 1 4568999
Q ss_pred EEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 285 MAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 285 lV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+|+.- +... +...++..+.++|||||.+++..
T Consensus 135 liFID----adK~-~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 135 LVFID----ADKA-DYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred EEEEe----CChh-hCHHHHHHHHHHhCCCcEEEEee
Confidence 99863 4444 67789999999999999999973
No 268
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00053 Score=68.51 Aligned_cols=100 Identities=16% Similarity=0.178 Sum_probs=67.2
Q ss_pred HHHHhc--ccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHc---------------CCCe
Q 006633 208 IGKLIN--LKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER---------------GVPA 266 (637)
Q Consensus 208 L~~lL~--~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~er---------------g~~~ 266 (637)
+.++|. +.+|. ++||+|.|+|.++..++.. +...+++ +..+..++.+.++ ....
T Consensus 72 ~le~L~~~L~pG~--s~LdvGsGSGYLt~~~~~mvg~~g~~~~GI---Eh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l 146 (237)
T KOG1661|consen 72 ALEYLDDHLQPGA--SFLDVGSGSGYLTACFARMVGATGGNVHGI---EHIPELVEYSKKNLDKDITTSESSSKLKRGEL 146 (237)
T ss_pred HHHHHHHhhccCc--ceeecCCCccHHHHHHHHHhcCCCccccch---hhhHHHHHHHHHHHHhhccCchhhhhhccCce
Confidence 334444 44544 8999999999988877643 4433444 5555555544432 1235
Q ss_pred EEEEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 267 LIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 267 ~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
.+.++|....--+...||.||+... .....+++...|+|||.+++-
T Consensus 147 ~ivvGDgr~g~~e~a~YDaIhvGAa--------a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 147 SIVVGDGRKGYAEQAPYDAIHVGAA--------ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred EEEeCCccccCCccCCcceEEEccC--------ccccHHHHHHhhccCCeEEEe
Confidence 6677777776667788999999753 334557888889999999885
No 269
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.00052 Score=72.25 Aligned_cols=159 Identities=19% Similarity=0.242 Sum_probs=98.8
Q ss_pred chhhHHHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHh----hcccch
Q 006633 451 FREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGLIGT 526 (637)
Q Consensus 451 f~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgl~~~ 526 (637)
...||..+...+. ..+ ..... +|||||||+|--|.+|++..- ..+|+.+|-++.-+.++.+ .|+.-+
T Consensus 92 Pr~dTe~Lve~~l---~~~---~~~~~--~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l~~~ 162 (280)
T COG2890 92 PRPDTELLVEAAL---ALL---LQLDK--RILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGLVRV 162 (280)
T ss_pred cCCchHHHHHHHH---Hhh---hhcCC--cEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCCccE
Confidence 4677888877765 111 12022 999999999999999987622 1577888887766666533 354221
Q ss_pred hhccccccCCCCCccceeeecc----------------------ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHHH
Q 006633 527 YQNWCEAMSTYPRTYDLIHADS----------------------IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDI 584 (637)
Q Consensus 527 ~~~wce~~~~yp~t~Dl~H~~~----------------------lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~ 584 (637)
+.--+.-|+..+..||+|-+|= ||+.....-.+..++-+..++|+|||++++.-..+.
T Consensus 163 ~~~~~dlf~~~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q 242 (280)
T COG2890 163 LVVQSDLFEPLRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQ 242 (280)
T ss_pred EEEeeecccccCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCc
Confidence 1111133555555788765421 222211111234788899999999999999888777
Q ss_pred HHHHHHHHhcCCceeEEeccCCCCCCcceEEEEEe
Q 006633 585 LVKIKSITDGMEWEGRIADHENGPRQREKILFANK 619 (637)
Q Consensus 585 ~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 619 (637)
...|+++.....+ ...+.....-.+.+.+.++++
T Consensus 243 ~~~v~~~~~~~~~-~~~v~~~~d~~g~~rv~~~~~ 276 (280)
T COG2890 243 GEAVKALFEDTGF-FEIVETLKDLFGRDRVVLAKL 276 (280)
T ss_pred HHHHHHHHHhcCC-ceEEEEEecCCCceEEEEEEe
Confidence 8889999888885 322222223334666666654
No 270
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.44 E-value=0.0014 Score=65.86 Aligned_cols=122 Identities=15% Similarity=0.201 Sum_probs=70.1
Q ss_pred CCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhhcccchhhccccccCCCC---Cccceeeeccccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP---RTYDLIHADSIFS 551 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~yp---~t~Dl~H~~~lfs 551 (637)
...-.|=|||||-|-.|+++.+. .|.-.-+++.... ++. |.- ..-| .+.|++-+ .
T Consensus 71 ~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~-----------Vta-----cdi-a~vPL~~~svDv~Vf----c 129 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPR-----------VTA-----CDI-ANVPLEDESVDVAVF----C 129 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--S---EEEEESS-SSTT-----------EEE-----S-T-TS-S--TT-EEEEEE----E
T ss_pred CCCEEEEECCCchHHHHHhcccCceEEEeeccCCCCC-----------EEE-----ecC-ccCcCCCCceeEEEE----E
Confidence 34568999999999999887643 4666666664332 111 211 2233 78887542 2
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEeCHH---HHHHHHHHHhcCCceeEEeccCCCCCCcceEEEEEecC
Q 006633 552 LYKDRCEMEDVLLEMDRILRPEGSVIIRDDVD---ILVKIKSITDGMEWEGRIADHENGPRQREKILFANKKY 621 (637)
Q Consensus 552 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~---~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K~~ 621 (637)
+.-=.-+..+.+.|..|||||||.++|.+-.. .++...+.++++..+....|..+ +--.++..+|.-
T Consensus 130 LSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~n---~~F~~f~F~K~~ 199 (219)
T PF05148_consen 130 LSLMGTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDESN---KHFVLFEFKKIR 199 (219)
T ss_dssp S---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--S---TTEEEEEEEE-S
T ss_pred hhhhCCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccCC---CeEEEEEEEEcC
Confidence 22223577899999999999999999986544 33445566888888888766543 345667777765
No 271
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=97.39 E-value=0.00024 Score=75.22 Aligned_cols=101 Identities=15% Similarity=0.276 Sum_probs=63.5
Q ss_pred CCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHH----hhcccchhhccccccC--CCCCccceeeecc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIY----ERGLIGTYQNWCEAMS--TYPRTYDLIHADS 548 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~----eRgl~~~~~~wce~~~--~yp~t~Dl~H~~~ 548 (637)
...+.|||+|||.|.++.++.++ |- .+++..|.+ .++..+. +.|+-.-++-.+..|. .+|. +|++-..+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~--~~~~~~D~~-~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~-~D~v~~~~ 223 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPE--LDSTILNLP-GAIDLVNENAAEKGVADRMRGIAVDIYKESYPE-ADAVLFCR 223 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCC--CEEEEEecH-HHHHHHHHHHHhCCccceEEEEecCccCCCCCC-CCEEEeEh
Confidence 45789999999999999988765 32 133333443 5665543 3465332222223332 3554 79865555
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD 581 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 581 (637)
++-.+.. -....+|-++-|.|||||.++|-|.
T Consensus 224 ~lh~~~~-~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 224 ILYSANE-QLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhhcCCh-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 4433322 1335789999999999999999863
No 272
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.37 E-value=0.00061 Score=76.22 Aligned_cols=98 Identities=17% Similarity=0.159 Sum_probs=58.0
Q ss_pred CCEEEEECCCCchHHHHHhhc--------CCEEEEcCccccHHHHHHHHHHcC--CCeEEEEeccccCCCCCCCeeEEEe
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--------NILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLPYPSRAFDMAHC 288 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--------~v~~vdisp~Dls~a~i~~A~erg--~~~~~~~~d~~~Lpfpd~sFDlV~~ 288 (637)
...|||||||+|.+....++. .|.+++-.+......+ +....++ ..+.+...+.+....|. .+|+|++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~-~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ-KRVNANGWGDKVTVIHGDMREVELPE-KVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH-HHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH-HHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEE
Confidence 358999999999887655543 3455554332221111 2223333 35888888888887664 7999999
Q ss_pred ccccccCCcCCHHHHHHHHHhcccCCeEEE
Q 006633 289 SRCLIPWGQYADGLYLIEVDRVLRPGGYWI 318 (637)
Q Consensus 289 s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lv 318 (637)
-..-.-...+-....|....|.|||||.++
T Consensus 265 ElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 265 ELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 443211122244567889999999999875
No 273
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.37 E-value=0.00049 Score=72.92 Aligned_cols=89 Identities=17% Similarity=0.248 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHHc-CCCeEEEEeccccCCCC
Q 006633 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALER-GVPALIGVMASIRLPYP 279 (637)
Q Consensus 203 ~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~er-g~~~~~~~~d~~~Lpfp 279 (637)
..++.+.+.+...++. +|||||||+|.++..|++++ ++++++++..+.....+++... ..++.+...|+...+++
T Consensus 23 ~i~~~Iv~~~~~~~~~--~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~ 100 (294)
T PTZ00338 23 LVLDKIVEKAAIKPTD--TVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP 100 (294)
T ss_pred HHHHHHHHhcCCCCcC--EEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc
Confidence 3556677766655544 89999999999999999874 5666664433332222222111 23577888887666553
Q ss_pred CCCeeEEEeccccccCC
Q 006633 280 SRAFDMAHCSRCLIPWG 296 (637)
Q Consensus 280 d~sFDlV~~s~~L~h~~ 296 (637)
.||.|+++.-+ ++.
T Consensus 101 --~~d~VvaNlPY-~Is 114 (294)
T PTZ00338 101 --YFDVCVANVPY-QIS 114 (294)
T ss_pred --ccCEEEecCCc-ccC
Confidence 68999987644 444
No 274
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.36 E-value=0.00045 Score=69.33 Aligned_cols=147 Identities=15% Similarity=0.258 Sum_probs=109.3
Q ss_pred HhhhccCCCCCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhhcc-----cchhhccccccCCCCCc
Q 006633 467 SVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL-----IGTYQNWCEAMSTYPRT 540 (637)
Q Consensus 467 ~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl-----~~~~~~wce~~~~yp~t 540 (637)
.++..+.. .+.++|.|+|||.|.--+.|+.+ |. --+..+|++..||..+.+|.. .|.+++||-. +.
T Consensus 21 dLla~Vp~-~~~~~v~DLGCGpGnsTelL~~RwP~--A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~-----~~ 92 (257)
T COG4106 21 DLLARVPL-ERPRRVVDLGCGPGNSTELLARRWPD--AVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPE-----QP 92 (257)
T ss_pred HHHhhCCc-cccceeeecCCCCCHHHHHHHHhCCC--CeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCC-----Cc
Confidence 34444555 67999999999999988888887 33 336788999999999999987 5778888832 56
Q ss_pred cceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE--eCHH--HHHHHHHHHhcCCceeEEeccC--CCCC-----
Q 006633 541 YDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR--DDVD--ILVKIKSITDGMEWEGRIADHE--NGPR----- 609 (637)
Q Consensus 541 ~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~--d~~~--~~~~~~~~~~~~~W~~~~~~~e--~~~~----- 609 (637)
.|||-++-+|--..+. ..+|-.+=--|+|||.+-+. |+.+ ...-|.+.++..-|...+-+.- -.+.
T Consensus 93 ~dllfaNAvlqWlpdH---~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~ 169 (257)
T COG4106 93 TDLLFANAVLQWLPDH---PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAA 169 (257)
T ss_pred cchhhhhhhhhhcccc---HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHH
Confidence 8999999999877766 67777777789999999987 4433 6678888999888887654311 0010
Q ss_pred -------CcceEEEEEecCCCC
Q 006633 610 -------QREKILFANKKYWTA 624 (637)
Q Consensus 610 -------~~~~~l~~~K~~w~~ 624 (637)
...+|=||.+.|-..
T Consensus 170 Yy~lLa~~~~rvDiW~T~Y~h~ 191 (257)
T COG4106 170 YYELLAPLACRVDIWHTTYYHQ 191 (257)
T ss_pred HHHHhCcccceeeeeeeecccc
Confidence 136777888877665
No 275
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.36 E-value=0.00029 Score=70.47 Aligned_cols=90 Identities=17% Similarity=0.113 Sum_probs=56.0
Q ss_pred ceeEeeecccchhhhhhhcCC---CeEEEEeccCCCCcchhHHHHh----hccc---chhh-ccccccCCCCCccceeee
Q 006633 478 YRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYE----RGLI---GTYQ-NWCEAMSTYPRTYDLIHA 546 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~e----Rgl~---~~~~-~wce~~~~yp~t~Dl~H~ 546 (637)
...|||+|||+|.+++.|.+. +- .|+.+|..++++..+.+ .|+- -+++ |..+.+. -...||.|.+
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g---~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~-~~~~fD~Ii~ 148 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRG---KVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE-KHAPFDAIIV 148 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc-cCCCccEEEE
Confidence 568999999999999887643 11 24444555556555443 3542 2222 2222221 1268999998
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 547 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 547 ~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
++.+. .+.-|+-|+|+|||.+++-.
T Consensus 149 ~~~~~---------~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 149 TAAAS---------TIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred ccCcc---------hhhHHHHHhcCcCcEEEEEE
Confidence 65432 33347789999999999853
No 276
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.34 E-value=0.00038 Score=69.71 Aligned_cols=90 Identities=17% Similarity=0.155 Sum_probs=58.6
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc--cchhhccccccCCCC--Cccceeeec
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTYP--RTYDLIHAD 547 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~~wce~~~~yp--~t~Dl~H~~ 547 (637)
....+|||+|||+|.+++.|.+..- .|..+|..++.+..+.++ |+ +-+.+ ...+..+| ..||+|.++
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~--~d~~~~~~~~~~fD~I~~~ 151 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRH--GDGWKGWPAYAPFDRILVT 151 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEE--CCcccCCCcCCCcCEEEEc
Confidence 3357899999999999987766421 345556555676666554 44 22222 12234444 689999885
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 548 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 548 ~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
..+ +.+.-++-+.|+|||.+++.
T Consensus 152 ~~~---------~~~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 152 AAA---------PEIPRALLEQLKEGGILVAP 174 (212)
T ss_pred cCc---------hhhhHHHHHhcCCCcEEEEE
Confidence 432 34455677899999999985
No 277
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=97.27 E-value=0.015 Score=61.43 Aligned_cols=129 Identities=17% Similarity=0.237 Sum_probs=75.3
Q ss_pred eEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHH----Hhhcccc--hhhccccccCCCCCccceeeeccccccC
Q 006633 480 NLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVI----YERGLIG--TYQNWCEAMSTYPRTYDLIHADSIFSLY 553 (637)
Q Consensus 480 ~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~----~eRgl~~--~~~~wce~~~~yp~t~Dl~H~~~lfs~~ 553 (637)
+|+|+|||+|=.|+.|++..= ...+.-+|.+..-++.+ .+-++-+ +++ .--++.-...||+|=+|==|-..
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~--s~~~~~v~~kfd~IisNPPfh~G 237 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENTEVWA--SNLYEPVEGKFDLIISNPPFHAG 237 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEE--ecccccccccccEEEeCCCccCC
Confidence 999999999999999987631 11222233321222221 1123322 232 12334444699998877666643
Q ss_pred CCC--cCHHHHHHHHhhcccCCcEEEEEeC--HHHHHHHHHHHhcCCceeEEeccCCCCCCcceEEEEEe
Q 006633 554 KDR--CEMEDVLLEMDRILRPEGSVIIRDD--VDILVKIKSITDGMEWEGRIADHENGPRQREKILFANK 619 (637)
Q Consensus 554 ~~~--c~~~~~l~e~dRiLrPgG~~i~~d~--~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 619 (637)
+.- --.+.++.+--+-|++||-++|=-+ ..+-.+|+++.. ++...... ++-+||=++|
T Consensus 238 ~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg----~v~~la~~----~gf~Vl~a~k 299 (300)
T COG2813 238 KAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG----NVEVLAKN----GGFKVLRAKK 299 (300)
T ss_pred cchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC----CEEEEEeC----CCEEEEEEec
Confidence 322 1123788888999999999988543 345666666665 44443322 3566776666
No 278
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.22 E-value=0.0018 Score=63.65 Aligned_cols=111 Identities=21% Similarity=0.310 Sum_probs=66.7
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CC-----------EEEEcCccccHHHHHHHHHHcCC--CeEE
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NI-----------LAVSFAPRDTHEAQVQFALERGV--PALI 268 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v-----------~~vdisp~Dls~a~i~~A~erg~--~~~~ 268 (637)
....+..+....++. .+||--||+|++..+.+.. ++ .+.|+++..+..+..+ +...+. .+.+
T Consensus 16 lA~~ll~la~~~~~~--~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N-~~~ag~~~~i~~ 92 (179)
T PF01170_consen 16 LAAALLNLAGWRPGD--VVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGAREN-LKAAGVEDYIDF 92 (179)
T ss_dssp HHHHHHHHTT--TTS---EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHH-HHHTT-CGGEEE
T ss_pred HHHHHHHHhCCCCCC--EEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHH-HHhcccCCceEE
Confidence 334455555555544 8999999999998665433 33 3677766554433333 223343 3678
Q ss_pred EEeccccCCCCCCCeeEEEeccccccCCcC---------CHHHHHHHHHhcccCCeEEEEE
Q 006633 269 GVMASIRLPYPSRAFDMAHCSRCLIPWGQY---------ADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 269 ~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~---------d~~~~L~ei~RvLKPGG~Lvls 320 (637)
...|+..+++.++++|.|+++. +|... -...+++++.|+|++...+++.
T Consensus 93 ~~~D~~~l~~~~~~~d~IvtnP---PyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 93 IQWDARELPLPDGSVDAIVTNP---PYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp EE--GGGGGGTTSBSCEEEEE-----STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred EecchhhcccccCCCCEEEECc---chhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 8889999998889999999976 33321 1125688999999995555554
No 279
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.002 Score=68.19 Aligned_cols=121 Identities=17% Similarity=0.176 Sum_probs=77.2
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc---cc-hhhccccccCCCC--Cccceeeecccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL---IG-TYQNWCEAMSTYP--RTYDLIHADSIF 550 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl---~~-~~~~wce~~~~yp--~t~Dl~H~~~lf 550 (637)
+.++|||+|||.|-+|-|.++.+. --|+.+|..+-.++++.|--. +. +.+.=+-..+..| +.||+|-||=|
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANIL- 238 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANIL- 238 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhh-
Confidence 389999999999999988888765 345666766667777766322 11 1111111123344 58999987211
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCceeEEeccC
Q 006633 551 SLYKDRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGMEWEGRIADHE 605 (637)
Q Consensus 551 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~W~~~~~~~e 605 (637)
. --+..+.=++-|.|||||++|++-= .+..+.|.+.+.+-.|++.-+...
T Consensus 239 A-----~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 239 A-----EVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred H-----HHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEec
Confidence 0 0011344455799999999999953 345677888887778877655444
No 280
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.21 E-value=0.0026 Score=69.88 Aligned_cols=95 Identities=14% Similarity=0.158 Sum_probs=62.8
Q ss_pred CEEEEECCCCchHHHHHhhc-C---CEEEEcCccccHHHHHHHHHHcCCC-eEEEEeccccCCCCCCCeeEEEecccccc
Q 006633 220 RTAIDTGCGVASWGAYLMSR-N---ILAVSFAPRDTHEAQVQFALERGVP-ALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-~---v~~vdisp~Dls~a~i~~A~erg~~-~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h 294 (637)
.+|||++||+|.++..++.. + |+++|+++..+..... .+..+++. ..+...|+..+....+.||+|+...
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~-N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP---- 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKK-NLELNGLENEKVFNKDANALLHEERKFDVVDIDP---- 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----
Confidence 38999999999999998764 4 5666665433332222 22223333 4466666654322145799999854
Q ss_pred CCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 295 WGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 295 ~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+. ....++..+.+.+++||.+.++.
T Consensus 134 ~G--s~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 134 FG--SPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred CC--CcHHHHHHHHHHhcCCCEEEEEe
Confidence 23 45678888788899999999984
No 281
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=97.21 E-value=0.00071 Score=71.69 Aligned_cols=128 Identities=15% Similarity=0.128 Sum_probs=70.9
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHH----hhcccchhhccccccCCCC-Cccceeeecccccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIY----ERGLIGTYQNWCEAMSTYP-RTYDLIHADSIFSL 552 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~----eRgl~~~~~~wce~~~~yp-~t~Dl~H~~~lfs~ 552 (637)
..+|||+|||+|-.|-+-++.+- -.|+.+|..+..+..+. .-|+-.-+. . ......+ ..||+|-||=+..
T Consensus 162 g~~vLDvG~GSGILaiaA~klGA--~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~-v-~~~~~~~~~~~dlvvANI~~~- 236 (295)
T PF06325_consen 162 GKRVLDVGCGSGILAIAAAKLGA--KKVVAIDIDPLAVEAARENAELNGVEDRIE-V-SLSEDLVEGKFDLVVANILAD- 236 (295)
T ss_dssp TSEEEEES-TTSHHHHHHHHTTB--SEEEEEESSCHHHHHHHHHHHHTT-TTCEE-E-SCTSCTCCS-EEEEEEES-HH-
T ss_pred CCEEEEeCCcHHHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHHcCCCeeEE-E-EEecccccccCCEEEECCCHH-
Confidence 45999999999976544444332 12344444434444443 334422111 1 1122344 8899998832222
Q ss_pred CCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCceeEEeccCCCCCCcceEEEEEec
Q 006633 553 YKDRCEMEDVLLEMDRILRPEGSVIIRDD-VDILVKIKSITDGMEWEGRIADHENGPRQREKILFANKK 620 (637)
Q Consensus 553 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K~ 620 (637)
-+..++-++.+.|+|||++|++-- .+....|.+.++. .|++.....+ +.-..|+++|+
T Consensus 237 -----vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~----~~W~~l~~~Kk 295 (295)
T PF06325_consen 237 -----VLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREE----GEWVALVFKKK 295 (295)
T ss_dssp -----HHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEE----TTEEEEEEEE-
T ss_pred -----HHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEE----CCEEEEEEEeC
Confidence 122455567899999999999842 2345666666666 7776544433 24567778775
No 282
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.20 E-value=0.00033 Score=69.67 Aligned_cols=119 Identities=18% Similarity=0.162 Sum_probs=76.5
Q ss_pred cCCCCCCCcccHHHHHHHHHHHh-cccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCCCe
Q 006633 190 FPGGGTMFPRGADAYIDDIGKLI-NLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPA 266 (637)
Q Consensus 190 Fpg~g~~f~~g~~~~i~~L~~lL-~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~~~ 266 (637)
|.|.|.||--..+.+.+ +...- +..+....++||+|+|.|..+..++.. .|.+. +++..|...-.+.+-++
T Consensus 84 ~lgrGsMFifSe~QF~k-lL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyAT-----ElS~tMr~rL~kk~ynV 157 (288)
T KOG3987|consen 84 FLGRGSMFIFSEEQFRK-LLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYAT-----ELSWTMRDRLKKKNYNV 157 (288)
T ss_pred ccccCceEEecHHHHHH-HHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHH-----HhhHHHHHHHhhcCCce
Confidence 67778887555544432 22121 122234568999999999999888765 33333 55666766555554332
Q ss_pred EEEEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccC-CeEEEEE
Q 006633 267 LIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRP-GGYWILS 320 (637)
Q Consensus 267 ~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKP-GG~Lvls 320 (637)
. . .....-.+-.||+|.|-..+..-. ++..+|+++..+|+| .|..+++
T Consensus 158 l-~---~~ew~~t~~k~dli~clNlLDRc~--~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 158 L-T---EIEWLQTDVKLDLILCLNLLDRCF--DPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred e-e---ehhhhhcCceeehHHHHHHHHhhc--ChHHHHHHHHHHhccCCCcEEEE
Confidence 2 1 112211234599999988774444 789999999999999 8888776
No 283
>PRK04457 spermidine synthase; Provisional
Probab=97.19 E-value=0.0014 Score=68.20 Aligned_cols=138 Identities=17% Similarity=0.142 Sum_probs=80.4
Q ss_pred CCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh-cccc------hhh-ccccccCCCCCccceeee
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER-GLIG------TYQ-NWCEAMSTYPRTYDLIHA 546 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR-gl~~------~~~-~wce~~~~yp~t~Dl~H~ 546 (637)
...++|||+|||.|.++.+|.+. |- +.+.-+|..+..+.++.+. ++.+ +.+ |.-+-+...|.+||+|=+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPD--TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence 34678999999999999988654 32 3445556655788887765 2221 111 211223445678999977
Q ss_pred ccccccC--CCCcCHHHHHHHHhhcccCCcEEEEE---eCHHHHHHHHHHHhcCCceeEEeccCCCCCCcceEEEEEe
Q 006633 547 DSIFSLY--KDRCEMEDVLLEMDRILRPEGSVIIR---DDVDILVKIKSITDGMEWEGRIADHENGPRQREKILFANK 619 (637)
Q Consensus 547 ~~lfs~~--~~~c~~~~~l~e~dRiLrPgG~~i~~---d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 619 (637)
+ .|... ........++.++-++|+|||.+++- .+......++.+.+.+.-.+.+...+. ....|+++.|
T Consensus 143 D-~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~~---~~N~v~~a~~ 216 (262)
T PRK04457 143 D-GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAES---HGNVAVFAFK 216 (262)
T ss_pred e-CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecCC---CccEEEEEEC
Confidence 5 34321 11122368999999999999999983 222222223333333332333333221 1346888876
No 284
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.19 E-value=0.00041 Score=67.35 Aligned_cols=114 Identities=19% Similarity=0.270 Sum_probs=69.6
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHh----hcccchhhccccccCCCC-Cccceeeeccccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYE----RGLIGTYQNWCEAMSTYP-RTYDLIHADSIFS 551 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~e----Rgl~~~~~~wce~~~~yp-~t~Dl~H~~~lfs 551 (637)
-.+|||+|||+|-.|.+|+++ +- ..|..+|.++..+..+.+ .++-.+.-.++..+...+ ..||+|=++-=|.
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~--~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPD--AKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTC--EEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SB
T ss_pred CCeEEEecCChHHHHHHHHHhCCC--CEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchh
Confidence 567999999999999999775 22 125555666667766644 333111112334444454 9999988865543
Q ss_pred cCCC--CcCHHHHHHHHhhcccCCcEEEE--EeCHHHHHHHHHHHh
Q 006633 552 LYKD--RCEMEDVLLEMDRILRPEGSVII--RDDVDILVKIKSITD 593 (637)
Q Consensus 552 ~~~~--~c~~~~~l~e~dRiLrPgG~~i~--~d~~~~~~~~~~~~~ 593 (637)
.... ...+..++.+.-++|+|||.+++ +.....-..++++..
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC
Confidence 2221 12356888999999999998854 433434444555554
No 285
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.18 E-value=0.0021 Score=66.28 Aligned_cols=121 Identities=18% Similarity=0.286 Sum_probs=84.0
Q ss_pred CceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhhcc--------cchhh-ccccccCCCC-Cccceee
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGL--------IGTYQ-NWCEAMSTYP-RTYDLIH 545 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl--------~~~~~-~wce~~~~yp-~t~Dl~H 545 (637)
....|||+|||.|..+-+|+++ += .-++.++-.+.+..++ .|.+ |-++| |.-+-....+ .+||+|=
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~--a~I~~VEiq~~~a~~A-~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii 120 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEK--AKIVGVEIQEEAAEMA-QRNVALNPLEERIQVIEADIKEFLKALVFASFDLII 120 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCC--CcEEEEEeCHHHHHHH-HHHHHhCcchhceeEehhhHHHhhhcccccccCEEE
Confidence 3889999999999988888877 31 1233334442333332 2222 44444 2111112223 4699988
Q ss_pred eccccc---------------cCCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCceeE
Q 006633 546 ADSIFS---------------LYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGR 600 (637)
Q Consensus 546 ~~~lfs---------------~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~ 600 (637)
|+==|= .+...|++++++-=.-++|+|||++.+=-+.+.+..|.+++++++|..+
T Consensus 121 ~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k 190 (248)
T COG4123 121 CNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPK 190 (248)
T ss_pred eCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCce
Confidence 764432 3445689999999999999999999999999999999999999999987
No 286
>PLN02823 spermine synthase
Probab=97.18 E-value=0.0017 Score=70.06 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=64.7
Q ss_pred CCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHc---------CCCeEEEEecccc-CCCCCCCe
Q 006633 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALER---------GVPALIGVMASIR-LPYPSRAF 283 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~er---------g~~~~~~~~d~~~-Lpfpd~sF 283 (637)
..++||.||+|.|..+.++++. .++++++ ++..++.|++. ...+.+...|... +.-.+++|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEi-----D~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~y 177 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDI-----DQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKF 177 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEEC-----CHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCc
Confidence 3568999999999999988875 3455655 44555555543 2346666666543 23345789
Q ss_pred eEEEeccccccCCcC-----CHHHHHH-HHHhcccCCeEEEEEe
Q 006633 284 DMAHCSRCLIPWGQY-----ADGLYLI-EVDRVLRPGGYWILSG 321 (637)
Q Consensus 284 DlV~~s~~L~h~~~~-----d~~~~L~-ei~RvLKPGG~Lvls~ 321 (637)
|+|++-. ..++... ....+++ .+.+.|+|||.+++..
T Consensus 178 DvIi~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 178 DVIIGDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cEEEecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 9999852 2222100 1345677 8999999999998753
No 287
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.13 E-value=0.00069 Score=68.49 Aligned_cols=97 Identities=12% Similarity=0.047 Sum_probs=60.8
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHH-Hhhcccch--------------hhccccccCCCC----
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVI-YERGLIGT--------------YQNWCEAMSTYP---- 538 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~-~eRgl~~~--------------~~~wce~~~~yp---- 538 (637)
-.+|||+|||.|-.|.+|++++. +|+.+|.++..+..+ .+.|+-.. +.-+|..+..++
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 46999999999999999999865 556666665556553 34454211 111343343333
Q ss_pred CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEE
Q 006633 539 RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVII 578 (637)
Q Consensus 539 ~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 578 (637)
.+||+|=..++|-.. .....+.++-.|-|.|||||++++
T Consensus 112 ~~fD~i~D~~~~~~l-~~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 112 GPVDAVYDRAALIAL-PEEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred CCcCEEEechhhccC-CHHHHHHHHHHHHHHcCCCCeEEE
Confidence 346654433333211 334457899999999999997444
No 288
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.12 E-value=0.00045 Score=73.31 Aligned_cols=100 Identities=15% Similarity=0.197 Sum_probs=66.2
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh---ccc-----chhhccccccCCCCCcc----c-ee
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER---GLI-----GTYQNWCEAMSTYPRTY----D-LI 544 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR---gl~-----~~~~~wce~~~~yp~t~----D-l~ 544 (637)
..+|||+|||+|.++..|++.-.=..+++++|.+..+|..+.++ ... ++..|.++.+ .+|..+ + ++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~-~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPL-ALPPEPAAGRRLGF 142 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchh-hhhcccccCCeEEE
Confidence 45799999999999998876611024689999999999998876 221 2222333322 233333 2 34
Q ss_pred eeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 545 HADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 545 H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
.+...|.... .-+...+|-++-+.|+|||.++|.
T Consensus 143 ~~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 143 FPGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EecccccCCC-HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 4434444432 334568999999999999999985
No 289
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.0059 Score=59.92 Aligned_cols=102 Identities=20% Similarity=0.243 Sum_probs=66.4
Q ss_pred CCEEEEECCCCchHHHHHhhc---CC--EEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccc
Q 006633 219 IRTAIDTGCGVASWGAYLMSR---NI--LAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~v--~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~ 293 (637)
...+||||||+|..+..|++. ++ .++|+.|... ++..+-|+.++..+.....|...- +..++.|+++.+.-+.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~-~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEAL-EATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHH-HHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcC
Confidence 458999999999999999887 33 4455544221 223344555566666665554332 2238999999987654
Q ss_pred cCCcC---------------C----HHHHHHHHHhcccCCeEEEEEeC
Q 006633 294 PWGQY---------------A----DGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 294 h~~~~---------------d----~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+-.++ + .++++..+..+|.|.|.|++..-
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 43322 1 23567777888999999999864
No 290
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.06 E-value=0.0022 Score=62.58 Aligned_cols=106 Identities=19% Similarity=0.256 Sum_probs=56.8
Q ss_pred HHHHHHHhc-ccCCCCCEEEEECCCCchHHHHHhhcC-----CEEEEcCccccHHHHHHHHHHcCCCeEEEEec------
Q 006633 205 IDDIGKLIN-LKDGSIRTAIDTGCGVASWGAYLMSRN-----ILAVSFAPRDTHEAQVQFALERGVPALIGVMA------ 272 (637)
Q Consensus 205 i~~L~~lL~-~~~g~~r~VLDIGCGtG~~a~~La~~~-----v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d------ 272 (637)
+.++.+..+ ...+...++||+||++|.|+..+++++ +.++|+.+.+.. ..+.+..+|
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~-----------~~~~~i~~d~~~~~~ 77 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL-----------QNVSFIQGDITNPEN 77 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS------------TTEEBTTGGGEEEEH
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc-----------cceeeeecccchhhH
Confidence 344555555 444456799999999999999999885 455666443111 111111111
Q ss_pred cccCC--C--CCCCeeEEEeccccccCCcC---C-------HHHHHHHHHhcccCCeEEEEEeC
Q 006633 273 SIRLP--Y--PSRAFDMAHCSRCLIPWGQY---A-------DGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 273 ~~~Lp--f--pd~sFDlV~~s~~L~h~~~~---d-------~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
...+. + ....||+|+|-.+. ..... + ....+.-+...|||||.|++-..
T Consensus 78 ~~~i~~~~~~~~~~~dlv~~D~~~-~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 78 IKDIRKLLPESGEKFDLVLSDMAP-NVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp SHHGGGSHGTTTCSESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred HHhhhhhccccccCcceecccccc-CCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 11111 1 12689999995532 11110 1 11234455677999999998754
No 291
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.06 E-value=0.00077 Score=68.38 Aligned_cols=96 Identities=11% Similarity=0.038 Sum_probs=65.0
Q ss_pred eeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHH-HHhhcccch--------------hhccccccCCC---C-C
Q 006633 479 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGV-IYERGLIGT--------------YQNWCEAMSTY---P-R 539 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~-~~eRgl~~~--------------~~~wce~~~~y---p-~ 539 (637)
.+|||.|||.|--|.+|++++. +|+.+|.++.-++. +.++|+-.. ++-++..+..+ + .
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 5899999999999999999976 56777777666664 356777422 11133433333 2 3
Q ss_pred ccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEE
Q 006633 540 TYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVII 578 (637)
Q Consensus 540 t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 578 (637)
+||+|--.++|... .....+.++-.|.++|+|||.+++
T Consensus 116 ~fd~v~D~~~~~~l-~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 116 DVDAVYDRAALIAL-PEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CeeEEEehHhHhhC-CHHHHHHHHHHHHHHcCCCCeEEE
Confidence 67776654544433 233457899999999999996444
No 292
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.05 E-value=0.0072 Score=63.43 Aligned_cols=197 Identities=21% Similarity=0.322 Sum_probs=109.8
Q ss_pred CCCCCCCCCcccccccccCCCCchhhhhhh-hcceEeecCCeeecCCCCCCCcccHHHHH----HHHHHHhc-c-cCCCC
Q 006633 147 GYTVPFRWPESRQFAWYANVPHKELTVEKK-NQNWVRFQGDRFSFPGGGTMFPRGADAYI----DDIGKLIN-L-KDGSI 219 (637)
Q Consensus 147 ~Y~~P~pwP~Srd~~wy~n~p~~~L~~~k~-~q~W~~~~g~~~~Fpg~g~~f~~g~~~~i----~~L~~lL~-~-~~g~~ 219 (637)
|+...|--=.+.|++ |.|.|.......+. .++|.+.-| + .|.+... +.|.+.+. + ..+..
T Consensus 70 G~~tGFDSGstLDYV-YrN~p~G~~~~GrliDr~yLnaiG----W--------rGIR~Rk~~l~~~i~~ai~~L~~~g~p 136 (311)
T PF12147_consen 70 GLETGFDSGSTLDYV-YRNQPQGKGPLGRLIDRNYLNAIG----W--------RGIRQRKVHLEELIRQAIARLREQGRP 136 (311)
T ss_pred chhcCCCCcchHhHH-hcCCCCCcchHHHHHHHhhhcccc----h--------HHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 455555554556655 67888766544432 333333211 1 1111111 12222222 1 23445
Q ss_pred CEEEEECCCCchHHHHHhhc------CCEEEEcCccccHHHHHHHHHHcCCC--eEEEEeccccC---CCCCCCeeEEEe
Q 006633 220 RTAIDTGCGVASWGAYLMSR------NILAVSFAPRDTHEAQVQFALERGVP--ALIGVMASIRL---PYPSRAFDMAHC 288 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~------~v~~vdisp~Dls~a~i~~A~erg~~--~~~~~~d~~~L---pfpd~sFDlV~~ 288 (637)
-+||||.||.|......+.. .+...|+++..+...+ +.+.++|.. +.|...|+... .--+-..|+++.
T Consensus 137 vrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~-~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iV 215 (311)
T PF12147_consen 137 VRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGR-ALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIV 215 (311)
T ss_pred eEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHH-HHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEE
Confidence 68999999999876665544 3455566554443332 344566654 37877775432 111334699999
Q ss_pred ccccccCCcCC-HHHHHHHHHhcccCCeEEEEEeCCCCccc---------c--ccCCCCchhhhHHhHhhHHHHHHHhce
Q 006633 289 SRCLIPWGQYA-DGLYLIEVDRVLRPGGYWILSGPPVNWES---------H--WKGWNRTTEDLKSEQNGIETIARSLCW 356 (637)
Q Consensus 289 s~~L~h~~~~d-~~~~L~ei~RvLKPGG~Lvls~pp~~w~~---------~--~~~w~~t~e~l~~~~~~ie~la~~l~w 356 (637)
+..++-+++.+ ....+.-+.+.|.|||+++.++-|.+-.. | ..+|--- ...+.++..+.+..+|
T Consensus 216 sGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMR----rRsq~EmD~Lv~~aGF 291 (311)
T PF12147_consen 216 SGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMR----RRSQAEMDQLVEAAGF 291 (311)
T ss_pred ecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEE----ecCHHHHHHHHHHcCC
Confidence 99887776422 34578899999999999999974322110 0 0123211 1234567778888888
Q ss_pred eeecc
Q 006633 357 KKLIQ 361 (637)
Q Consensus 357 ~~v~~ 361 (637)
+++.+
T Consensus 292 ~K~~q 296 (311)
T PF12147_consen 292 EKIDQ 296 (311)
T ss_pred chhhh
Confidence 76653
No 293
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.01 E-value=0.0038 Score=69.38 Aligned_cols=101 Identities=23% Similarity=0.239 Sum_probs=77.1
Q ss_pred EEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCCc
Q 006633 221 TAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (637)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~ 297 (637)
++|-+|||.-.+...+.+- .++.+|+++..+...+...+ .......+...+...+.|++.+||+|+--..+.++..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhccCCCcceeEEEecCccccccC
Confidence 8999999999998888876 46667666655554444444 2223577888899999999999999999888877765
Q ss_pred CC--------HHHHHHHHHhcccCCeEEEEEeC
Q 006633 298 YA--------DGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 298 ~d--------~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++ ....+.++.|+|+|||.++...-
T Consensus 130 de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 130 DEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 32 22457999999999999887643
No 294
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.01 E-value=0.0024 Score=66.07 Aligned_cols=91 Identities=14% Similarity=0.101 Sum_probs=60.5
Q ss_pred CEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHH----HcCC--CeEEEEecccc-CC-C-----CCC
Q 006633 220 RTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFAL----ERGV--PALIGVMASIR-LP-Y-----PSR 281 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~----erg~--~~~~~~~d~~~-Lp-f-----pd~ 281 (637)
++|||||+++|.-+.+|+.. .+++++..+ ...+.|+ +.|. .+.+..+++.. |+ + ..+
T Consensus 81 k~iLEiGT~~GySal~la~al~~~g~v~tiE~~~-----~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~ 155 (247)
T PLN02589 81 KNTMEIGVYTGYSLLATALALPEDGKILAMDINR-----ENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHG 155 (247)
T ss_pred CEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCH-----HHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCC
Confidence 48999999999998888864 355555543 2333332 2342 36666665433 22 1 136
Q ss_pred CeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 282 AFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 282 sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
+||+|+.- +... ....+++.+.+.|+|||.+++.
T Consensus 156 ~fD~iFiD----adK~-~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 156 TFDFIFVD----ADKD-NYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred cccEEEec----CCHH-HhHHHHHHHHHhcCCCeEEEEc
Confidence 89999974 3333 5567888889999999999886
No 295
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.00 E-value=0.003 Score=63.32 Aligned_cols=125 Identities=16% Similarity=0.152 Sum_probs=71.3
Q ss_pred eecCCeeecCCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhh--cC--CEEEEcCccccHHHHHH
Q 006633 182 RFQGDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS--RN--ILAVSFAPRDTHEAQVQ 257 (637)
Q Consensus 182 ~~~g~~~~Fpg~g~~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~--~~--v~~vdisp~Dls~a~i~ 257 (637)
...|-.|.+.-...+|..+...--.++.+.+ .++ .+|||+.||.|.|+..+++ +. |.++|+.|.... .+.+
T Consensus 69 ~E~G~~f~~D~~kvyfs~rl~~Er~Ri~~~v--~~~--e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~-~L~~ 143 (200)
T PF02475_consen 69 KENGIRFKVDLSKVYFSPRLSTERRRIANLV--KPG--EVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVE-YLKE 143 (200)
T ss_dssp EETTEEEEEETTTS---GGGHHHHHHHHTC----TT---EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHH-HHHH
T ss_pred EeCCEEEEEccceEEEccccHHHHHHHHhcC--Ccc--eEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHH-HHHH
Confidence 3344445544455666666554445566553 333 4999999999999999998 43 566666553222 3333
Q ss_pred HHHHcCCC--eEEEEeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEE
Q 006633 258 FALERGVP--ALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWI 318 (637)
Q Consensus 258 ~A~erg~~--~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lv 318 (637)
.++.+++. +....+|...+.- .+.||-|++.. +. ....+|..+.+++|+||.+-
T Consensus 144 Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l-----p~-~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 144 NIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL-----PE-SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HHHHTT-TTTEEEEES-GGG----TT-EEEEEE-------TS-SGGGGHHHHHHHEEEEEEEE
T ss_pred HHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC-----hH-HHHHHHHHHHHHhcCCcEEE
Confidence 34444443 5667788777654 78999888754 22 34468899999999999874
No 296
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=96.99 E-value=0.00082 Score=67.06 Aligned_cols=119 Identities=20% Similarity=0.240 Sum_probs=72.9
Q ss_pred ceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcc----hhHHHHhhcccchhhccccccC---C-C-CCccceeeec
Q 006633 478 YRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKIN----TLGVIYERGLIGTYQNWCEAMS---T-Y-PRTYDLIHAD 547 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~----~l~~~~eRgl~~~~~~wce~~~---~-y-p~t~Dl~H~~ 547 (637)
-..+||+|||.|.|..+|+.. |= .|++.++...+ .+..+..+||--+.--.|.+.. . + |.+.|.||.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd--~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i- 94 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPD--INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYI- 94 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTT--SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEE-
T ss_pred CCeEEEecCCCCHHHHHHHHHCCC--CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEE-
Confidence 349999999999999999653 21 25555555433 3445556666222222223322 2 2 489998887
Q ss_pred ccccc------CCCCcCH-HHHHHHHhhcccCCcEEEE-EeCHHHHHHHHHHHhcC--CceeE
Q 006633 548 SIFSL------YKDRCEM-EDVLLEMDRILRPEGSVII-RDDVDILVKIKSITDGM--EWEGR 600 (637)
Q Consensus 548 ~lfs~------~~~~c~~-~~~l~e~dRiLrPgG~~i~-~d~~~~~~~~~~~~~~~--~W~~~ 600 (637)
.|.. ...|..+ +.+|-++-|+|+|||.+.+ ||..++...+.+.+... .++..
T Consensus 95 -~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 95 -NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp -ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE
T ss_pred -eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEc
Confidence 5551 1123233 5888999999999999998 57777888888876664 44443
No 297
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=96.98 E-value=0.0014 Score=70.37 Aligned_cols=114 Identities=14% Similarity=0.135 Sum_probs=70.2
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cccchhhccccccCCC---CCccceeeecccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTY---PRTYDLIHADSIF 550 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wce~~~~y---p~t~Dl~H~~~lf 550 (637)
...|||.+||+|++...+...+ .+|...|....++..+.+. |+-. ++--+..+... +.+||+|-++-=|
T Consensus 183 g~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSESVDAIATDPPY 258 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCCCCEEEECCCC
Confidence 5589999999999965554433 2456667776677654432 4432 11112222222 3789999886433
Q ss_pred cc---CCC---CcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCc
Q 006633 551 SL---YKD---RCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEW 597 (637)
Q Consensus 551 s~---~~~---~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W 597 (637)
.. ... ......+|-|+-|+|+|||++++--..+ ..++++++.--|
T Consensus 259 g~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~ 309 (329)
T TIGR01177 259 GRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR 309 (329)
T ss_pred cCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc
Confidence 32 111 1335789999999999999988764332 144456677777
No 298
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=96.95 E-value=0.0025 Score=67.32 Aligned_cols=98 Identities=16% Similarity=0.233 Sum_probs=70.9
Q ss_pred CCceeEeeecccchhhhhhhcCCCe-EEEEeccCCCCcchhHHHHhhcccchh---hcc--c-cccCCCCCccceeeecc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPL-WVMNTVPVEAKINTLGVIYERGLIGTY---QNW--C-EAMSTYPRTYDLIHADS 548 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v-~~mnv~~~~~~~~~l~~~~eRgl~~~~---~~w--c-e~~~~yp~t~Dl~H~~~ 548 (637)
=+.|.|||+|||-|-+...|+..+- .|+-+=|.... .+|+-+-+-++|.- |-. . |.++. ..+||+|=|-|
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf--~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MG 190 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLF--YLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMG 190 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHH--HHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEee
Confidence 4578999999999999999988765 55666665443 56666666666521 110 1 33444 58999999988
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
|+= + |-+--+.|.++-..|||||-+|+-
T Consensus 191 VLY--H-rr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 191 VLY--H-RRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred ehh--c-cCCHHHHHHHHHHhhCCCCEEEEE
Confidence 875 3 445578899999999999999973
No 299
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.94 E-value=0.0027 Score=61.85 Aligned_cols=132 Identities=17% Similarity=0.298 Sum_probs=70.4
Q ss_pred CCceeEeeecccchhhhhhhcCCC-----eEEEEeccCCCCcchhHHHHhhcccchhhccc-----cccCCC-C---Ccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDP-----LWVMNTVPVEAKINTLGVIYERGLIGTYQNWC-----EAMSTY-P---RTY 541 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~-----v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wc-----e~~~~y-p---~t~ 541 (637)
+...+|||+||+.|||..++.++. |+.+-+.|.+.. +++..+-.|-. +.+... + +.|
T Consensus 22 ~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~---------~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~ 92 (181)
T PF01728_consen 22 GKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL---------QNVSFIQGDITNPENIKDIRKLLPESGEKF 92 (181)
T ss_dssp TTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS----------TTEEBTTGGGEEEEHSHHGGGSHGTTTCSE
T ss_pred ccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc---------cceeeeecccchhhHHHhhhhhccccccCc
Confidence 678999999999999999999886 344444444211 22211111111 112222 2 589
Q ss_pred ceeeeccccccCCCC---c--CHHHH---HHHHhhcccCCcEEEEE-----eCHHHHHHHHHHHhcCCceeEEeccCCCC
Q 006633 542 DLIHADSIFSLYKDR---C--EMEDV---LLEMDRILRPEGSVIIR-----DDVDILVKIKSITDGMEWEGRIADHENGP 608 (637)
Q Consensus 542 Dl~H~~~lfs~~~~~---c--~~~~~---l~e~dRiLrPgG~~i~~-----d~~~~~~~~~~~~~~~~W~~~~~~~e~~~ 608 (637)
|+|-||+-+.....+ . .+..+ |.=+-..|||||.+|+. +..+.+..++...+...+-. -.-.++
T Consensus 93 dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~K---p~~sr~ 169 (181)
T PF01728_consen 93 DLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIVK---PPSSRS 169 (181)
T ss_dssp SEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEEE----TTSBT
T ss_pred ceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEEE---CcCCCC
Confidence 999999966543321 1 11122 22234679999999885 22356666666655543322 223444
Q ss_pred CCcceEEEEEe
Q 006633 609 RQREKILFANK 619 (637)
Q Consensus 609 ~~~~~~l~~~K 619 (637)
...|.-|||++
T Consensus 170 ~s~E~Ylv~~~ 180 (181)
T PF01728_consen 170 ESSEEYLVCRG 180 (181)
T ss_dssp TCBEEEEESEE
T ss_pred CccEEEEEEcC
Confidence 56788888864
No 300
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.92 E-value=0.0021 Score=66.72 Aligned_cols=117 Identities=18% Similarity=0.273 Sum_probs=65.0
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHh-hc--CCEEEEcCccccHHHH--------------HHH-HHHcCC-
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLM-SR--NILAVSFAPRDTHEAQ--------------VQF-ALERGV- 264 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La-~~--~v~~vdisp~Dls~a~--------------i~~-A~erg~- 264 (637)
.++.+.+.+......+.++||||||.-..-..-+ +. .++..|+.+....+-+ .+. +.-.|.
T Consensus 42 ~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~ 121 (256)
T PF01234_consen 42 FLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKR 121 (256)
T ss_dssp HHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCc
Confidence 3444555555444456799999999864432222 22 5777777663332111 111 110110
Q ss_pred -------------CeEEEEeccccC-CCCC-----CCeeEEEeccccccCCcCCHH---HHHHHHHhcccCCeEEEEEe
Q 006633 265 -------------PALIGVMASIRL-PYPS-----RAFDMAHCSRCLIPWGQYADG---LYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 265 -------------~~~~~~~d~~~L-pfpd-----~sFDlV~~s~~L~h~~~~d~~---~~L~ei~RvLKPGG~Lvls~ 321 (637)
--.+...|.... |+.. ..||+|++++|++-... +.+ .+++++.++|||||+|++.+
T Consensus 122 ~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~-d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 122 EKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACK-DLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp SGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-S-SHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred chhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcC-CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 012344454443 3332 35999999999977665 444 67999999999999999985
No 301
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.92 E-value=0.0024 Score=67.67 Aligned_cols=118 Identities=22% Similarity=0.300 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhh---------c--CCEEEEcCccccHHHHHHHHHHcCC---CeE
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMS---------R--NILAVSFAPRDTHEAQVQFALERGV---PAL 267 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~---------~--~v~~vdisp~Dls~a~i~~A~erg~---~~~ 267 (637)
....+.+.+++....+. +|||..||+|.|...+.+ . .+.++++.+....-+.+.... ++. ...
T Consensus 32 ~~i~~l~~~~~~~~~~~--~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l-~~~~~~~~~ 108 (311)
T PF02384_consen 32 REIVDLMVKLLNPKKGD--SVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL-HGIDNSNIN 108 (311)
T ss_dssp HHHHHHHHHHHTT-TTE--EEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH-TTHHCBGCE
T ss_pred HHHHHHHHhhhhccccc--eeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh-hcccccccc
Confidence 55667777777554443 899999999999877765 2 345555543322222222222 222 123
Q ss_pred EEEeccccCCCC--CCCeeEEEeccccccC--CcC-----------------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 268 IGVMASIRLPYP--SRAFDMAHCSRCLIPW--GQY-----------------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 268 ~~~~d~~~Lpfp--d~sFDlV~~s~~L~h~--~~~-----------------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+...|....+.. ...||+|+++.-+... ... ..-.++..+.+.|++||.+++..|
T Consensus 109 i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 109 IIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp EEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 555565444332 4789999997544222 100 112578889999999999988876
No 302
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=96.91 E-value=0.00034 Score=62.63 Aligned_cols=99 Identities=18% Similarity=0.252 Sum_probs=62.4
Q ss_pred eeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc---cchhh-ccccccCCCC-Cccceeeeccc
Q 006633 479 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL---IGTYQ-NWCEAMSTYP-RTYDLIHADSI 549 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl---~~~~~-~wce~~~~yp-~t~Dl~H~~~l 549 (637)
-+|||+|||.|.|..++.+.. ..++..+|-.+..+.++..+ |+ +.+++ |+-+....++ ..||+|=++--
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 479999999999999998775 45666666664444444331 11 22222 2222222344 88999999888
Q ss_pred cccCC-----CCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 550 FSLYK-----DRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 550 fs~~~-----~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
|.... .+-....++.++.|+|||||.+++-
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 87431 1124468889999999999999873
No 303
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=96.91 E-value=0.004 Score=62.80 Aligned_cols=139 Identities=15% Similarity=0.153 Sum_probs=89.7
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccc--hhhccccccCCCCCccceeeeccccc--
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIG--TYQNWCEAMSTYPRTYDLIHADSIFS-- 551 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~--~~~~wce~~~~yp~t~Dl~H~~~lfs-- 551 (637)
+.-+-|||+|||+|--|+.|.+.+- -.+.+|.+..||.++.||-+=| ++.|..|.+++=|.|||-+-..+-..
T Consensus 49 ~~~~~iLDIGCGsGLSg~vL~~~Gh---~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWL 125 (270)
T KOG1541|consen 49 PKSGLILDIGCGSGLSGSVLSDSGH---QWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWL 125 (270)
T ss_pred CCCcEEEEeccCCCcchheeccCCc---eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeee
Confidence 5789999999999999999988863 1345677779999999977765 33488899998899999532211110
Q ss_pred -cCCCCcCHH-----HHHHHHhhcccCCcEEEEE---eCHHHHHHHHHHHhcCCcee-EEeccCCCCCCcceEEEE
Q 006633 552 -LYKDRCEME-----DVLLEMDRILRPEGSVIIR---DDVDILVKIKSITDGMEWEG-RIADHENGPRQREKILFA 617 (637)
Q Consensus 552 -~~~~~c~~~-----~~l~e~dRiLrPgG~~i~~---d~~~~~~~~~~~~~~~~W~~-~~~~~e~~~~~~~~~l~~ 617 (637)
.-...|..+ .++--+-..|.+|+..++. .+.+.++.|...+..--..- .++|.-.+..++-..||.
T Consensus 126 cnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~GGlvVd~Pes~k~kK~yLVL 201 (270)
T KOG1541|consen 126 CNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFGGGLVVDWPESTKNKKYYLVL 201 (270)
T ss_pred cccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccCCceeeecccccccceeEEEE
Confidence 011223323 4456688999999999998 45555666655543322221 233443233344455555
No 304
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=96.88 E-value=0.0092 Score=58.95 Aligned_cols=144 Identities=20% Similarity=0.252 Sum_probs=87.9
Q ss_pred cCcchhcchhh--HHHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhhhc-CCCeEEEEeccCCCCcchhHHH--
Q 006633 444 DGVTAEMFRED--TALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALV-DDPLWVMNTVPVEAKINTLGVI-- 518 (637)
Q Consensus 444 ~g~~~~~f~~d--~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~-~~~v~~mnv~~~~~~~~~l~~~-- 518 (637)
+|+..+.|..| ...-|+-|+- -.+..|.. .....++|+|||+|+.+-.++ -.|. .-|..++..+..+..+
T Consensus 2 ~gipD~~F~~~~~~p~TK~EIRa--l~ls~L~~-~~g~~l~DIGaGtGsi~iE~a~~~p~--~~v~AIe~~~~a~~~~~~ 76 (187)
T COG2242 2 PGIPDELFERDEGGPMTKEEIRA--LTLSKLRP-RPGDRLWDIGAGTGSITIEWALAGPS--GRVIAIERDEEALELIER 76 (187)
T ss_pred CCCCchhhccCCCCCCcHHHHHH--HHHHhhCC-CCCCEEEEeCCCccHHHHHHHHhCCC--ceEEEEecCHHHHHHHHH
Confidence 34556667666 2223444431 11333444 556799999999999886665 1222 3445555543333322
Q ss_pred -Hhh-cc--cchhhccc-cccCCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHH
Q 006633 519 -YER-GL--IGTYQNWC-EAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR-DDVDILVKIKSIT 592 (637)
Q Consensus 519 -~eR-gl--~~~~~~wc-e~~~~yp~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~ 592 (637)
.+| |+ +-++..+. +.++..| +||.|-. .. . -.++.||-....-|||||.+|.. -+.+.+.++-+..
T Consensus 77 N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFI-----GG-g-~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~ 148 (187)
T COG2242 77 NAARFGVDNLEVVEGDAPEALPDLP-SPDAIFI-----GG-G-GNIEEILEAAWERLKPGGRLVANAITLETLAKALEAL 148 (187)
T ss_pred HHHHhCCCcEEEEeccchHhhcCCC-CCCEEEE-----CC-C-CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHH
Confidence 222 22 11222222 4555556 6776554 21 2 67899999999999999999996 5778888888888
Q ss_pred hcCCc-eeE
Q 006633 593 DGMEW-EGR 600 (637)
Q Consensus 593 ~~~~W-~~~ 600 (637)
+.+.+ ++.
T Consensus 149 ~~~g~~ei~ 157 (187)
T COG2242 149 EQLGGREIV 157 (187)
T ss_pred HHcCCceEE
Confidence 99988 554
No 305
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=96.88 E-value=0.0019 Score=71.82 Aligned_cols=101 Identities=20% Similarity=0.283 Sum_probs=61.1
Q ss_pred CceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh----cccchhhccc-ccc--CC--CCCccceeee
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWC-EAM--ST--YPRTYDLIHA 546 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wc-e~~--~~--yp~t~Dl~H~ 546 (637)
...+|||||||.||++.+|++. + .-.|+..|.+..++..+.++ |+--.+.--+ ..+ .. -+.+||.|-+
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~--~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAP--QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 3578999999999999888764 2 12355556666677665443 5410010011 121 11 1378999986
Q ss_pred c------cccccCCC------CcC-------HHHHHHHHhhcccCCcEEEEE
Q 006633 547 D------SIFSLYKD------RCE-------MEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 547 ~------~lfs~~~~------~c~-------~~~~l~e~dRiLrPgG~~i~~ 579 (637)
+ |++..... .-+ -..+|-++-|+|||||.++++
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvys 367 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYA 367 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 5 33331110 000 137899999999999999997
No 306
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.85 E-value=0.0047 Score=67.17 Aligned_cols=111 Identities=13% Similarity=0.040 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCC
Q 006633 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP 277 (637)
Q Consensus 201 ~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lp 277 (637)
.+.+++.+.+++...+ .+|||+|||+|.++..|++. .++++++++..+..+.. .+...++ ++.+...|...+-
T Consensus 183 ~~~l~~~v~~~~~~~~---~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~-n~~~~~~~~v~~~~~d~~~~~ 258 (353)
T TIGR02143 183 NIKMLEWACEVTQGSK---GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQY-NIAANNIDNVQIIRMSAEEFT 258 (353)
T ss_pred HHHHHHHHHHHhhcCC---CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHH-HHHHcCCCcEEEEEcCHHHHH
Confidence 3445555555553222 26999999999999998876 45666665443332222 2223344 4677777754421
Q ss_pred --------C---C-----CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 278 --------Y---P-----SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 278 --------f---p-----d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+ . ...||+|+.-.--.. -...+++.+. +|++.++++..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G----~~~~~l~~l~---~~~~ivYvsC~ 312 (353)
T TIGR02143 259 QAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAG----LDPDTCKLVQ---AYERILYISCN 312 (353)
T ss_pred HHHhhccccccccccccccCCCCEEEECCCCCC----CcHHHHHHHH---cCCcEEEEEcC
Confidence 1 0 123799987542211 2334555544 48999999864
No 307
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.84 E-value=0.005 Score=67.15 Aligned_cols=110 Identities=15% Similarity=0.075 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccC-C
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRL-P 277 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~L-p 277 (637)
+..++.+.+.+... ..++||++||+|.++..|++. .++++++++..+..+.. .+...++ ++.+...|+... +
T Consensus 193 e~l~~~v~~~~~~~---~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~-N~~~~~~~~v~~~~~d~~~~l~ 268 (362)
T PRK05031 193 EKMLEWALDATKGS---KGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQY-NIAANGIDNVQIIRMSAEEFTQ 268 (362)
T ss_pred HHHHHHHHHHhhcC---CCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHH-HHHHhCCCcEEEEECCHHHHHH
Confidence 33444454444321 236999999999999988876 46666665443332222 2223344 577777776442 1
Q ss_pred -CC--------------CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 278 -YP--------------SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 278 -fp--------------d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+. ...||+|+.-.-. .. -...+++.+.+ |++.++++..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR---~G-~~~~~l~~l~~---~~~ivyvSC~ 321 (362)
T PRK05031 269 AMNGVREFNRLKGIDLKSYNFSTIFVDPPR---AG-LDDETLKLVQA---YERILYISCN 321 (362)
T ss_pred HHhhcccccccccccccCCCCCEEEECCCC---CC-CcHHHHHHHHc---cCCEEEEEeC
Confidence 10 2258999986522 11 23445555543 7888888864
No 308
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.84 E-value=0.01 Score=62.36 Aligned_cols=100 Identities=17% Similarity=0.107 Sum_probs=57.6
Q ss_pred CCCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHH---cCCCeE---EEE-eccccCCCCCCCeeEEEec
Q 006633 218 SIRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALE---RGVPAL---IGV-MASIRLPYPSRAFDMAHCS 289 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~e---rg~~~~---~~~-~d~~~Lpfpd~sFDlV~~s 289 (637)
..++|||+|||.|..+..+.+. + ....+...|.++.+.+++.. ...... +.. .-....++. ..|+|+++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DLvi~s 109 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDDLVIAS 109 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC--CCcEEEEe
Confidence 3568999999999765544442 1 11122222556666665542 121111 100 001122332 23999999
Q ss_pred cccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 290 RCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 290 ~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
++|..+..+....+++.+.+.+.+ +|++..|
T Consensus 110 ~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEp 140 (274)
T PF09243_consen 110 YVLNELPSAARAELVRSLWNKTAP--VLVLVEP 140 (274)
T ss_pred hhhhcCCchHHHHHHHHHHHhccC--cEEEEcC
Confidence 999888864566677777777765 8988877
No 309
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.81 E-value=0.03 Score=55.46 Aligned_cols=91 Identities=19% Similarity=0.174 Sum_probs=59.6
Q ss_pred EEEEECCCCchHHHHHhh--c--CCEEEEcCccccHHHHHHH-HHHcCCC-eEEEEeccccCCCCCCCeeEEEecccccc
Q 006633 221 TAIDTGCGVASWGAYLMS--R--NILAVSFAPRDTHEAQVQF-ALERGVP-ALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (637)
Q Consensus 221 ~VLDIGCGtG~~a~~La~--~--~v~~vdisp~Dls~a~i~~-A~erg~~-~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h 294 (637)
+++|||+|.|.-+.-|+= - .++.++-... ..+.++. +.+-+.. +.+....++. +.....||+|++-.+-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~K--K~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~-- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGK--KVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVA-- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHH--HHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSS--
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCch--HHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhc--
Confidence 799999999965555543 2 4455544321 2222332 2233443 7777777766 5567889999986544
Q ss_pred CCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 295 WGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 295 ~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
....++.-+...|++||.+++.
T Consensus 126 ----~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 126 ----PLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp ----SHHHHHHHHGGGEEEEEEEEEE
T ss_pred ----CHHHHHHHHHHhcCCCCEEEEE
Confidence 5777999999999999999886
No 310
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.80 E-value=0.004 Score=61.53 Aligned_cols=129 Identities=15% Similarity=0.179 Sum_probs=72.9
Q ss_pred CCeeecCCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCC---EEEEcCccccHHHHHHHHHH
Q 006633 185 GDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI---LAVSFAPRDTHEAQVQFALE 261 (637)
Q Consensus 185 g~~~~Fpg~g~~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v---~~vdisp~Dls~a~i~~A~e 261 (637)
|..+..|.+... ....+...+.+.+++....-.+.++||+-||+|.++...+++|. +.++. +....+..++
T Consensus 10 gr~l~~p~~~~~-RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~-----~~~a~~~i~~ 83 (183)
T PF03602_consen 10 GRKLKTPKGDNT-RPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEK-----NRKAIKIIKK 83 (183)
T ss_dssp T-EEE-TT--TS--SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES------HHHHHHHHH
T ss_pred CCEecCCCCCCc-CCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEEC-----CHHHHHHHHH
Confidence 344555554322 33345566667777764312244999999999999999999963 44444 3333333222
Q ss_pred ----cCC--CeEEEEeccc-cCC---CCCCCeeEEEeccccccCCcCC-HHHHHHHHH--hcccCCeEEEEEeC
Q 006633 262 ----RGV--PALIGVMASI-RLP---YPSRAFDMAHCSRCLIPWGQYA-DGLYLIEVD--RVLRPGGYWILSGP 322 (637)
Q Consensus 262 ----rg~--~~~~~~~d~~-~Lp---fpd~sFDlV~~s~~L~h~~~~d-~~~~L~ei~--RvLKPGG~Lvls~p 322 (637)
-+. .+.+...|.. .++ .....||+|+.-. |+.... ...++..+. .+|+++|.+++...
T Consensus 84 N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP---PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 84 NLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP---PYAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp HHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-----STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred HHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC---CcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 122 2556656632 221 2468899999876 444423 267777776 79999999999864
No 311
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=96.79 E-value=0.0065 Score=60.78 Aligned_cols=99 Identities=15% Similarity=0.140 Sum_probs=61.3
Q ss_pred ceeEeeecccchhhhhhhcC-CCeEEEEeccCCCCcchhHHHHhhcc------cc-hhhccccccCCCC-Cccceeeecc
Q 006633 478 YRNLLDMNAYLGGFAAALVD-DPLWVMNTVPVEAKINTLGVIYERGL------IG-TYQNWCEAMSTYP-RTYDLIHADS 548 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~-~~v~~mnv~~~~~~~~~l~~~~eRgl------~~-~~~~wce~~~~yp-~t~Dl~H~~~ 548 (637)
---||.+|||+|.-=-++-. +.+-|.- .|..++|-+++-.+-- +. .+|.-.|.+.-.+ .+||.|-+.-
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~---lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPINSVTC---LDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTL 153 (252)
T ss_pred ccceEEecccCCCCcccccCCCCceEEE---eCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEE
Confidence 44579999999964444433 3333333 4445567666544321 11 2333346666555 8999766532
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV 582 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 582 (637)
+.- +.-+....|-|+-|||||||.+|+-+.+
T Consensus 154 vLC---Sve~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 154 VLC---SVEDPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred EEe---ccCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 221 2234568999999999999999997643
No 312
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.76 E-value=0.0093 Score=67.22 Aligned_cols=99 Identities=17% Similarity=0.232 Sum_probs=62.9
Q ss_pred CCEEEEECCCCchHHHHHhhc----C-CEEEEcCccccHHHHHHHH----HHcCC-CeEEEEeccccCC-CCCCCeeEEE
Q 006633 219 IRTAIDTGCGVASWGAYLMSR----N-ILAVSFAPRDTHEAQVQFA----LERGV-PALIGVMASIRLP-YPSRAFDMAH 287 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~----~-v~~vdisp~Dls~a~i~~A----~erg~-~~~~~~~d~~~Lp-fpd~sFDlV~ 287 (637)
+.+|||+++|.|.=+..+++. + +.+.|+ +...++.. .+-|+ ++.+...|...+. ...+.||.|+
T Consensus 114 g~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~-----~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 114 PQRVLDMAAAPGSKTTQIAALMNNQGAIVANEY-----SASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeC-----CHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEE
Confidence 449999999999888887765 2 444555 33333322 22344 3556666665553 3346799999
Q ss_pred ----eccc--c-------ccCCcC-------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 288 ----CSRC--L-------IPWGQY-------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 288 ----~s~~--L-------~h~~~~-------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|+.. + ..|..+ -...+|..+.+.|||||+++.++-
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 5422 1 122221 124689999999999999999864
No 313
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.71 E-value=0.00028 Score=67.27 Aligned_cols=54 Identities=22% Similarity=0.258 Sum_probs=48.0
Q ss_pred cccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCc
Q 006633 273 SIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNW 326 (637)
Q Consensus 273 ~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w 326 (637)
....+|.+++.|+|++.++++|+..++...+++++.|+|||||+|-++.|..++
T Consensus 38 s~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f 91 (185)
T COG4627 38 SNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKF 91 (185)
T ss_pred hhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcch
Confidence 456789999999999999999999767778999999999999999999886654
No 314
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.63 E-value=0.0031 Score=64.29 Aligned_cols=99 Identities=16% Similarity=0.240 Sum_probs=66.9
Q ss_pred cCCCCCceeEeeecccchhhhhhhcCC--C--eEEEEeccCCCCcchhHHHHhhcccchhhccccccCCCCCccceeeec
Q 006633 472 LAQPGRYRNLLDMNAYLGGFAAALVDD--P--LWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHAD 547 (637)
Q Consensus 472 l~~~~~~r~vlD~~~g~ggfaa~l~~~--~--v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~yp~t~Dl~H~~ 547 (637)
... ...+.|+|+|+|.|.++.++.++ + ++++ |.+ ..++.+.+..=|... =..-|.++|. +|++...
T Consensus 96 ~d~-~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~-----Dlp-~v~~~~~~~~rv~~~--~gd~f~~~P~-~D~~~l~ 165 (241)
T PF00891_consen 96 FDF-SGFKTVVDVGGGSGHFAIALARAYPNLRATVF-----DLP-EVIEQAKEADRVEFV--PGDFFDPLPV-ADVYLLR 165 (241)
T ss_dssp STT-TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEE-----E-H-HHHCCHHHTTTEEEE--ES-TTTCCSS-ESEEEEE
T ss_pred ccc-cCccEEEeccCcchHHHHHHHHHCCCCcceee-----ccH-hhhhccccccccccc--cccHHhhhcc-ccceeee
Confidence 455 67899999999999999999754 2 3333 333 344444441111111 1134578899 9999998
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCC--cEEEEEeC
Q 006633 548 SIFSLYKDRCEMEDVLLEMDRILRPE--GSVIIRDD 581 (637)
Q Consensus 548 ~lfs~~~~~c~~~~~l~e~dRiLrPg--G~~i~~d~ 581 (637)
+++-.+.+. +...||-.+-+.|+|| |.++|-|.
T Consensus 166 ~vLh~~~d~-~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 166 HVLHDWSDE-DCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp SSGGGS-HH-HHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hhhhhcchH-HHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 888877653 4568999999999999 99999753
No 315
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=96.62 E-value=0.012 Score=61.49 Aligned_cols=142 Identities=11% Similarity=0.101 Sum_probs=77.5
Q ss_pred CCceeEeeecccchhhhhhhcCCC-eEEEEeccCCCCcchhHHHHhh--cc--------cchhh-ccccccCCCCCccce
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDP-LWVMNTVPVEAKINTLGVIYER--GL--------IGTYQ-NWCEAMSTYPRTYDL 543 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~eR--gl--------~~~~~-~wce~~~~yp~t~Dl 543 (637)
.+.++||++|||.|+++..+.+++ + .+++-+|..++.+..+.+. .+ +-+.+ |--+-....+++||+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~--~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDv 148 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSV--EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDV 148 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCc--ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccE
Confidence 345699999999999998887764 3 3455555555666666543 00 01111 111111223689999
Q ss_pred eeeccccccCCC-CcCHHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCceeEEeccC--CCCCCcceEE
Q 006633 544 IHADSIFSLYKD-RCEMEDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGRIADHE--NGPRQREKIL 615 (637)
Q Consensus 544 ~H~~~lfs~~~~-~c~~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~~e--~~~~~~~~~l 615 (637)
|=++........ .--....+-.+-|+|+|||.+++.- ..+.+..+.+.++..=..+..+..- .-+.+.-.++
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~~~~~~vp~~~~g~~~~~ 228 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITEYYTANIPTYPSGLWTFT 228 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeEEEEEEcCccccchhEEE
Confidence 876543221111 1113567778899999999999852 2334444444333332233322211 1111235688
Q ss_pred EEEe
Q 006633 616 FANK 619 (637)
Q Consensus 616 ~~~K 619 (637)
+|.|
T Consensus 229 ~as~ 232 (270)
T TIGR00417 229 IGSK 232 (270)
T ss_pred EEEC
Confidence 8887
No 316
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=96.60 E-value=0.0046 Score=64.43 Aligned_cols=98 Identities=17% Similarity=0.190 Sum_probs=60.0
Q ss_pred ceeEeeecccchhhhhhhcCC---CeEEEEeccCCCCcchhHHHHhh----cc--cchhh-ccccccCCCCCccceeeec
Q 006633 478 YRNLLDMNAYLGGFAAALVDD---PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTYPRTYDLIHAD 547 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~-~wce~~~~yp~t~Dl~H~~ 547 (637)
..+||||+||.|+++.+|++. .- .|+..|.+...+..+.++ |+ +-+++ |. ..+......||.|-+|
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~~~~g---~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~-~~~~~~~~~fD~Vl~D 147 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALMKNEG---AIVANEFSKSRTKVLIANINRCGVLNVAVTNFDG-RVFGAAVPKFDAILLD 147 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHcCCCC---EEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCH-HHhhhhccCCCEEEEc
Confidence 467999999999999877553 11 355667776677665443 43 22232 21 1222222569998765
Q ss_pred cccccCC------------CCcCH-------HHHHHHHhhcccCCcEEEEE
Q 006633 548 SIFSLYK------------DRCEM-------EDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 548 ~lfs~~~------------~~c~~-------~~~l~e~dRiLrPgG~~i~~ 579 (637)
-=.|... +.-++ ..+|-++-++|||||+++.+
T Consensus 148 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs 198 (264)
T TIGR00446 148 APCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS 198 (264)
T ss_pred CCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 4433210 00011 25888999999999999997
No 317
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.60 E-value=0.0043 Score=69.06 Aligned_cols=103 Identities=18% Similarity=0.232 Sum_probs=62.6
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc-cchh-hccccccCCCC-Cccceeeeccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL-IGTY-QNWCEAMSTYP-RTYDLIHADSI 549 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl-~~~~-~~wce~~~~yp-~t~Dl~H~~~l 549 (637)
....|||+|||.|+++.+|++..- -..|+..|.++.++..+.++ |+ +.+. +|..+....++ .+||.|=++.=
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 356899999999999988876510 02456667776777666443 33 1111 13222111233 68999875443
Q ss_pred cccCC------------CC-------cCHHHHHHHHhhcccCCcEEEEEe
Q 006633 550 FSLYK------------DR-------CEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 550 fs~~~------------~~-------c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
+|... .. .....+|-+.-++|||||.++++.
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 33210 00 112368889999999999999863
No 318
>PRK01581 speE spermidine synthase; Validated
Probab=96.56 E-value=0.015 Score=63.38 Aligned_cols=147 Identities=10% Similarity=0.019 Sum_probs=81.7
Q ss_pred CCceeEeeecccchhhhhhhcCCC-eEEEEeccCCCCcchhHHHHhh-ccc------------chhh-ccccccCCCCCc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDP-LWVMNTVPVEAKINTLGVIYER-GLI------------GTYQ-NWCEAMSTYPRT 540 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~eR-gl~------------~~~~-~wce~~~~yp~t 540 (637)
...++||++|||.|+.++.+.+.+ + .+|+-+|..+.+++++.+. .|. -+.+ |--+-+..-++.
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v--~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~ 226 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETV--LHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSL 226 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCC--CeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCC
Confidence 457899999999999988888764 4 4555556665788888752 111 0111 111111223468
Q ss_pred cceeeeccccccC--CCCcCHHHHHHHHhhcccCCcEEEEEeC-----HHHHHHHHHHHhcCCceeEEeccCCCCC-Ccc
Q 006633 541 YDLIHADSIFSLY--KDRCEMEDVLLEMDRILRPEGSVIIRDD-----VDILVKIKSITDGMEWEGRIADHENGPR-QRE 612 (637)
Q Consensus 541 ~Dl~H~~~lfs~~--~~~c~~~~~l~e~dRiLrPgG~~i~~d~-----~~~~~~~~~~~~~~~W~~~~~~~e~~~~-~~~ 612 (637)
||+|=++--.... ..+---..++-.+-|.|+|||.+++... .+....+.+.++..-..+..+..---+. ..-
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~W 306 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDW 306 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCce
Confidence 9998876211110 1111114678889999999999988643 2232333443333333333222111111 126
Q ss_pred eEEEEEecCCCC
Q 006633 613 KILFANKKYWTA 624 (637)
Q Consensus 613 ~~l~~~K~~w~~ 624 (637)
.+++|.|.....
T Consensus 307 gF~~as~~~~~~ 318 (374)
T PRK01581 307 GFHIAANSAYVL 318 (374)
T ss_pred EEEEEeCCcccc
Confidence 688888766544
No 319
>PRK00811 spermidine synthase; Provisional
Probab=96.56 E-value=0.013 Score=61.78 Aligned_cols=142 Identities=14% Similarity=0.109 Sum_probs=77.3
Q ss_pred CCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhh------cc-----cchhh-ccccccCCCCCccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYER------GL-----IGTYQ-NWCEAMSTYPRTYD 542 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eR------gl-----~~~~~-~wce~~~~yp~t~D 542 (637)
...++|||+|||.|+.+..++++ ++ .+|+-++..+..+.++.+. |+ +-+++ |--+-+..-+.+||
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~--~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSV--EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCC--CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence 45789999999999999999887 45 3455555555677777653 11 11111 11111122247899
Q ss_pred eeeeccccccCC-C-CcCHHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCceeEEecc--CCCCCCcce
Q 006633 543 LIHADSIFSLYK-D-RCEMEDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGRIADH--ENGPRQREK 613 (637)
Q Consensus 543 l~H~~~lfs~~~-~-~c~~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~~~~~--e~~~~~~~~ 613 (637)
+|=++. +..+. . .---+.++.++-|+|+|||.+++.- ..+.+..+.+.++..=-.+...-. ..-|.+...
T Consensus 153 vIi~D~-~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vp~~~~~~w~ 231 (283)
T PRK00811 153 VIIVDS-TDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIVRPYQAAIPTYPSGLWS 231 (283)
T ss_pred EEEECC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCCEEEEEeECCcccCchhe
Confidence 987642 21111 0 0011466778899999999999852 123333443333333223332211 111222345
Q ss_pred EEEEEec
Q 006633 614 ILFANKK 620 (637)
Q Consensus 614 ~l~~~K~ 620 (637)
+++|.|.
T Consensus 232 f~~as~~ 238 (283)
T PRK00811 232 FTFASKN 238 (283)
T ss_pred eEEeecC
Confidence 6778774
No 320
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.54 E-value=0.0089 Score=63.04 Aligned_cols=100 Identities=14% Similarity=0.130 Sum_probs=66.4
Q ss_pred CCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcC---------CCeEEEEeccccC-CCCCC
Q 006633 216 DGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERG---------VPALIGVMASIRL-PYPSR 281 (637)
Q Consensus 216 ~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg---------~~~~~~~~d~~~L-pfpd~ 281 (637)
.+..++||-||-|.|..++.+++. .++.+++ .++.++.+++.. ..+.+...|.... .-...
T Consensus 74 h~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEI-----D~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~ 148 (282)
T COG0421 74 HPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEI-----DPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE 148 (282)
T ss_pred CCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEc-----CHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCC
Confidence 334479999999999999999988 4566655 445666666542 2244555554332 21234
Q ss_pred CeeEEEeccccccCCcC---CHHHHHHHHHhcccCCeEEEEEe
Q 006633 282 AFDMAHCSRCLIPWGQY---ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 282 sFDlV~~s~~L~h~~~~---d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+||+|++-.. .+..+. ....+++.+.|.|+++|.++...
T Consensus 149 ~fDvIi~D~t-dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 149 KFDVIIVDST-DPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred cCCEEEEcCC-CCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 8999997332 121100 23679999999999999999973
No 321
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=96.51 E-value=0.005 Score=68.71 Aligned_cols=99 Identities=16% Similarity=0.184 Sum_probs=62.5
Q ss_pred ceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcchhHHHHhh----cc--cchhh-ccccccCCC-CCccceeeec
Q 006633 478 YRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTY-PRTYDLIHAD 547 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~-~wce~~~~y-p~t~Dl~H~~ 547 (637)
..+||||+||.||.+.+|++. +- -.|+..|.++..+..+.++ |+ +-+.+ |.. .+..+ +..||.|=+|
T Consensus 238 g~~VLD~cagpGgkt~~la~~~~~~--g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~-~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELMKDQ--GKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAE-RLTEYVQDTFDRILVD 314 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh-hhhhhhhccCCEEEEC
Confidence 568999999999998887653 11 1456667777788777554 44 22222 322 22223 4789998765
Q ss_pred cccccCCC---Cc---------C-------HHHHHHHHhhcccCCcEEEEE
Q 006633 548 SIFSLYKD---RC---------E-------MEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 548 ~lfs~~~~---~c---------~-------~~~~l~e~dRiLrPgG~~i~~ 579 (637)
.--|.... += + -..+|-+.-+.|||||.++++
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs 365 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYS 365 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 44332211 00 1 136688899999999999996
No 322
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.49 E-value=0.027 Score=60.66 Aligned_cols=92 Identities=15% Similarity=0.147 Sum_probs=62.7
Q ss_pred CCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCCc
Q 006633 218 SIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWGQ 297 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~~ 297 (637)
.+.++||+||++|.|+..|++++..++.+ |..+ ..-.......+.....+..+...+.+.+|+++|-.+-
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~~V~AV---D~g~--l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve----- 280 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGMFVTAV---DNGP--MAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVE----- 280 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCEEEEE---echh--cCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEeccc-----
Confidence 45699999999999999999998666666 3221 1111223345666666655443236789999996543
Q ss_pred CCHHHHHHHHHhcccCC--eEEEEE
Q 006633 298 YADGLYLIEVDRVLRPG--GYWILS 320 (637)
Q Consensus 298 ~d~~~~L~ei~RvLKPG--G~Lvls 320 (637)
.+.++++-+.+.|..| ..+++.
T Consensus 281 -~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 281 -KPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred -CHHHHHHHHHHHHhcCcccEEEEE
Confidence 6788888888888776 355554
No 323
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.48 E-value=0.012 Score=61.20 Aligned_cols=83 Identities=17% Similarity=0.191 Sum_probs=60.1
Q ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHHc---CCCeEEEEeccccCC
Q 006633 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALER---GVPALIGVMASIRLP 277 (637)
Q Consensus 203 ~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~er---g~~~~~~~~d~~~Lp 277 (637)
..++.|.+.+...++. .|||||+|.|.++..|++++ ++++.+++ ..+..-.+. ..++.+..+|+...+
T Consensus 17 ~v~~kIv~~a~~~~~d--~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~-----~l~~~L~~~~~~~~n~~vi~~DaLk~d 89 (259)
T COG0030 17 NVIDKIVEAANISPGD--NVLEIGPGLGALTEPLLERAARVTAIEIDR-----RLAEVLKERFAPYDNLTVINGDALKFD 89 (259)
T ss_pred HHHHHHHHhcCCCCCC--eEEEECCCCCHHHHHHHhhcCeEEEEEeCH-----HHHHHHHHhcccccceEEEeCchhcCc
Confidence 3567788777766644 99999999999999999984 56666644 333333333 345788888988888
Q ss_pred CCCC-CeeEEEecccc
Q 006633 278 YPSR-AFDMAHCSRCL 292 (637)
Q Consensus 278 fpd~-sFDlV~~s~~L 292 (637)
+++. .++.|+++.-.
T Consensus 90 ~~~l~~~~~vVaNlPY 105 (259)
T COG0030 90 FPSLAQPYKVVANLPY 105 (259)
T ss_pred chhhcCCCEEEEcCCC
Confidence 8754 68999998643
No 324
>PRK00536 speE spermidine synthase; Provisional
Probab=96.45 E-value=0.026 Score=58.90 Aligned_cols=91 Identities=11% Similarity=0.065 Sum_probs=62.1
Q ss_pred CCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHc---------CCCeEEEEeccccCCCCCCCee
Q 006633 216 DGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER---------GVPALIGVMASIRLPYPSRAFD 284 (637)
Q Consensus 216 ~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~er---------g~~~~~~~~d~~~Lpfpd~sFD 284 (637)
.+..++||=||.|.|..++.+++. .++.+++++ ..++.+++- .+.+.+.. .. ..-..++||
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~-----~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~--~~~~~~~fD 141 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADE-----KILDSFISFFPHFHEVKNNKNFTHAK-QL--LDLDIKKYD 141 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCH-----HHHHHHHHHCHHHHHhhcCCCEEEee-hh--hhccCCcCC
Confidence 345679999999999999999998 466666644 455555442 12333332 11 111236899
Q ss_pred EEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 285 MAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 285 lV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+|+.-.. ....+.+.+.|.|+|||.++...
T Consensus 142 VIIvDs~-------~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 142 LIICLQE-------PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred EEEEcCC-------CChHHHHHHHHhcCCCcEEEECC
Confidence 9997532 34567799999999999999964
No 325
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=96.44 E-value=0.0069 Score=64.91 Aligned_cols=97 Identities=10% Similarity=0.136 Sum_probs=62.8
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhccc------c-hhhcc-ccccCCCCCccceeeeccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLI------G-TYQNW-CEAMSTYPRTYDLIHADSI 549 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~------~-~~~~w-ce~~~~yp~t~Dl~H~~~l 549 (637)
..+|||+|||+|.++..|.+++. +|+.+|.+++++.++.+|.-- + ....+ +..+...+.+||+|=|..+
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 46899999999999999998753 678889888999998887320 0 11112 1223334689999888766
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
+-.+... .+..++..+.++ .+||. ||+.
T Consensus 222 L~H~p~~-~~~~ll~~l~~l-~~g~l-iIs~ 249 (315)
T PLN02585 222 LIHYPQD-KADGMIAHLASL-AEKRL-IISF 249 (315)
T ss_pred EEecCHH-HHHHHHHHHHhh-cCCEE-EEEe
Confidence 6544332 233455566654 45555 5553
No 326
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.0015 Score=62.87 Aligned_cols=135 Identities=17% Similarity=0.272 Sum_probs=78.9
Q ss_pred CCEEEEECCCCchHHHHHhhc--CCEEE-EcCccccHHHHHHHHHHcCCCe---EEEEe--c--cccCCCCCCCeeEEEe
Q 006633 219 IRTAIDTGCGVASWGAYLMSR--NILAV-SFAPRDTHEAQVQFALERGVPA---LIGVM--A--SIRLPYPSRAFDMAHC 288 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~--~v~~v-disp~Dls~a~i~~A~erg~~~---~~~~~--d--~~~Lpfpd~sFDlV~~ 288 (637)
+++||++|.|--.++..|... ....+ =.+..+.+...++....++... ...++ . ..+.....+.||+|+|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 468999999966555554433 22222 2233344444444333332100 11010 0 1112234568999999
Q ss_pred ccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeec-ccCcEEE
Q 006633 289 SRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLI-QKKDLAI 367 (637)
Q Consensus 289 s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~-~~~~~aI 367 (637)
+.|+ .+.+ ..+.+++.|.+.|||.|.-++..| +....++ +..+.+...++.... +.-+.+|
T Consensus 110 ADCl-FfdE-~h~sLvdtIk~lL~p~g~Al~fsP------------RRg~sL~----kF~de~~~~gf~v~l~enyde~i 171 (201)
T KOG3201|consen 110 ADCL-FFDE-HHESLVDTIKSLLRPSGRALLFSP------------RRGQSLQ----KFLDEVGTVGFTVCLEENYDEAI 171 (201)
T ss_pred ccch-hHHH-HHHHHHHHHHHHhCcccceeEecC------------cccchHH----HHHHHHHhceeEEEecccHhHHH
Confidence 9999 5655 778899999999999999888877 2222333 344555666676543 5556788
Q ss_pred Eecc
Q 006633 368 WQKP 371 (637)
Q Consensus 368 WqKP 371 (637)
|||-
T Consensus 172 wqrh 175 (201)
T KOG3201|consen 172 WQRH 175 (201)
T ss_pred HHHH
Confidence 8874
No 327
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=96.41 E-value=0.0056 Score=68.46 Aligned_cols=100 Identities=20% Similarity=0.289 Sum_probs=61.6
Q ss_pred ceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcchhHHHHhh----cc--cchhh-ccccccCCCCCccceeeecc
Q 006633 478 YRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMSTYPRTYDLIHADS 548 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~-~wce~~~~yp~t~Dl~H~~~ 548 (637)
..+|||||||.|+++.+|++. +- ..|+.+|.+++.+..+.++ |+ +-+.+ |..+....++++||+|=++.
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~--~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~ 328 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNT--GKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDA 328 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcC
Confidence 468999999999999888764 11 2455556666677666543 44 22222 33222223568899986543
Q ss_pred ------ccccC------CCCcCH-------HHHHHHHhhcccCCcEEEEE
Q 006633 549 ------IFSLY------KDRCEM-------EDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 549 ------lfs~~------~~~c~~-------~~~l~e~dRiLrPgG~~i~~ 579 (637)
++... .+..++ ..+|-+.-|+|||||.+|++
T Consensus 329 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys 378 (444)
T PRK14902 329 PCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYS 378 (444)
T ss_pred CCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 33211 011111 25788899999999999975
No 328
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.40 E-value=0.02 Score=65.50 Aligned_cols=74 Identities=16% Similarity=0.144 Sum_probs=41.5
Q ss_pred CCEEEEECCCCchHHHHHhhcC-----C--EEEEcCccccHHHHHHHHHHc----C-CCeEEEEeccccC-----CCCCC
Q 006633 219 IRTAIDTGCGVASWGAYLMSRN-----I--LAVSFAPRDTHEAQVQFALER----G-VPALIGVMASIRL-----PYPSR 281 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~-----v--~~vdisp~Dls~a~i~~A~er----g-~~~~~~~~d~~~L-----pfpd~ 281 (637)
..+|||.|||+|.|...++++. . ...++...|+++..+..+..+ + ....+...+.... .-..+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 4589999999999988877541 0 113333346666666655433 1 1222332221111 11125
Q ss_pred CeeEEEecccc
Q 006633 282 AFDMAHCSRCL 292 (637)
Q Consensus 282 sFDlV~~s~~L 292 (637)
.||+|+++.-+
T Consensus 112 ~fD~IIgNPPy 122 (524)
T TIGR02987 112 LFDIVITNPPY 122 (524)
T ss_pred cccEEEeCCCc
Confidence 79999997644
No 329
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.35 E-value=0.023 Score=61.05 Aligned_cols=99 Identities=10% Similarity=0.038 Sum_probs=60.5
Q ss_pred CEEEEECCCCchHHHHHhhc------CCEEEEcCccccHHHHHHHHHHcC-----CCeEE--EEecccc----CCC--CC
Q 006633 220 RTAIDTGCGVASWGAYLMSR------NILAVSFAPRDTHEAQVQFALERG-----VPALI--GVMASIR----LPY--PS 280 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~------~v~~vdisp~Dls~a~i~~A~erg-----~~~~~--~~~d~~~----Lpf--pd 280 (637)
..++|+|||.|.=+..|++. .+..+.+ |++.+.++.+.++. +.+.+ ..++... ++- ..
T Consensus 78 ~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~pl---DIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 78 SMLVELGSGNLRKVGILLEALERQKKSVDYYAL---DVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCCCceEEEE---ECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 38999999999876665543 2223322 55666665554332 23433 3333322 221 12
Q ss_pred CCeeEEEec-cccccCCcCCHHHHHHHHHh-cccCCeEEEEEe
Q 006633 281 RAFDMAHCS-RCLIPWGQYADGLYLIEVDR-VLRPGGYWILSG 321 (637)
Q Consensus 281 ~sFDlV~~s-~~L~h~~~~d~~~~L~ei~R-vLKPGG~Lvls~ 321 (637)
....+++.- ..+-.+.+++...+|+++.+ .|+|||.|++..
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 345666653 45656665466789999999 999999999974
No 330
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.35 E-value=0.029 Score=59.40 Aligned_cols=155 Identities=13% Similarity=0.204 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhcccC--CCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHH---HHHHHc----C-C-------
Q 006633 202 DAYIDDIGKLINLKD--GSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQV---QFALER----G-V------- 264 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~--g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i---~~A~er----g-~------- 264 (637)
...+++|..+.+... ....+||--|||.|.++..|+..|...-+ .+++--|. .+++.. + .
T Consensus 132 kpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qG---NEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh 208 (369)
T KOG2798|consen 132 KPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQG---NEFSYFMLICSSFILNYCKQENQFTIYPFIH 208 (369)
T ss_pred hhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccc---cHHHHHHHHHHHHHHHhhccCCcEEEEeeee
Confidence 446777777776432 23457999999999999999988653222 13343332 222210 0 0
Q ss_pred -------------Ce---------------EE--EEeccccC---CCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcc
Q 006633 265 -------------PA---------------LI--GVMASIRL---PYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVL 311 (637)
Q Consensus 265 -------------~~---------------~~--~~~d~~~L---pfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvL 311 (637)
++ .| ..+|..+. +-..++||+|+..+.+ .-.. +.-.++..|..+|
T Consensus 209 ~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFI-DTa~-NileYi~tI~~iL 286 (369)
T KOG2798|consen 209 QYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFI-DTAH-NILEYIDTIYKIL 286 (369)
T ss_pred ccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEe-echH-HHHHHHHHHHHhc
Confidence 00 00 01111000 0112469999987544 4443 7778999999999
Q ss_pred cCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeeccc
Q 006633 312 RPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQK 362 (637)
Q Consensus 312 KPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~~~ 362 (637)
||||+|+-.+|-.+......+ ......++-..+.+..+++.++|+.+.+.
T Consensus 287 k~GGvWiNlGPLlYHF~d~~g-~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 287 KPGGVWINLGPLLYHFEDTHG-VENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred cCCcEEEeccceeeeccCCCC-CcccccccccHHHHHHHHHhcCcEEEEee
Confidence 999999999885443322211 11233455566788899999999988865
No 331
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=96.35 E-value=0.012 Score=60.23 Aligned_cols=108 Identities=19% Similarity=0.309 Sum_probs=66.8
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhc-------c--cchhhccccccCCCCCccceeeec
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG-------L--IGTYQNWCEAMSTYPRTYDLIHAD 547 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg-------l--~~~~~~wce~~~~yp~t~Dl~H~~ 547 (637)
...+|||+|||+|+|.-.|++.++ -.|..+|.+.+++.--+... . |. +.+|-+-. .|++-+|
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~-~~~~~~~~------~d~~~~D 145 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQDERVKVLERTNIR-YVTPADIF------PDFATFD 145 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcc-cCCHhHcC------CCceeee
Confidence 467999999999999999998864 44566677756666533321 1 11 11333321 2444443
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEE-------------------eC---HHHHHHHHHHHhcCCceeE
Q 006633 548 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR-------------------DD---VDILVKIKSITDGMEWEGR 600 (637)
Q Consensus 548 ~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~-------------------d~---~~~~~~~~~~~~~~~W~~~ 600 (637)
-.|. .+..+|-.|.+.|+| |.+|+= |. .+.+.++...+..+.|++.
T Consensus 146 vsfi------S~~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (228)
T TIGR00478 146 VSFI------SLISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEK 213 (228)
T ss_pred EEEe------ehHhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEe
Confidence 3332 223468888899999 777752 32 2356666766777888765
No 332
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.34 E-value=0.031 Score=56.17 Aligned_cols=93 Identities=16% Similarity=0.107 Sum_probs=61.0
Q ss_pred CCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCC--------CCCCCeeE
Q 006633 219 IRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--------YPSRAFDM 285 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lp--------fpd~sFDl 285 (637)
+..|+|+|+-.|+|+..++++ .|.++|+.|.+.. ..+.+.++|+..-+ +....+|+
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~-----------~~V~~iq~d~~~~~~~~~l~~~l~~~~~Dv 114 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI-----------PGVIFLQGDITDEDTLEKLLEALGGAPVDV 114 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC-----------CCceEEeeeccCccHHHHHHHHcCCCCcce
Confidence 349999999999999988876 2788888775443 23566666654432 33445799
Q ss_pred EEecccc---ccCCcC-----C-HHHHHHHHHhcccCCeEEEEEeC
Q 006633 286 AHCSRCL---IPWGQY-----A-DGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 286 V~~s~~L---~h~~~~-----d-~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
|+|-.+- -++..+ . ...++.-+..+|+|||.|++-..
T Consensus 115 V~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 115 VLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred EEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 9973221 122211 1 22355666789999999999754
No 333
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.29 E-value=0.0073 Score=67.63 Aligned_cols=100 Identities=17% Similarity=0.236 Sum_probs=59.8
Q ss_pred ceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcchhHHHHhh----cccchhhccccccCCC-C-Cccceeeec--
Q 006633 478 YRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMSTY-P-RTYDLIHAD-- 547 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wce~~~~y-p-~t~Dl~H~~-- 547 (637)
...|||+|||.|+++.+|++. +- -.|+.+|.+..++..+.++ |+ ..+.-.+.....+ | .+||.|=+|
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~--~~V~avD~s~~~l~~~~~~~~~~g~-~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNR--GQITAVDRYPQKLEKIRSHASALGI-TIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCC--cEEEEEECCHHHHHHHHHHHHHhCC-CeEEEEeCcccccccCCCCCEEEEcCC
Confidence 468999999999988777642 11 1455667776777665443 44 1111112222222 3 689988753
Q ss_pred ----cccccCC------CCcCH-------HHHHHHHhhcccCCcEEEEEe
Q 006633 548 ----SIFSLYK------DRCEM-------EDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 548 ----~lfs~~~------~~c~~-------~~~l~e~dRiLrPgG~~i~~d 580 (637)
|+|.... ...++ ..+|-++-++|||||.+++..
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 3332110 11112 258999999999999999973
No 334
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.28 E-value=0.0094 Score=60.04 Aligned_cols=118 Identities=15% Similarity=0.118 Sum_probs=57.8
Q ss_pred cccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-C---CEEEEcCcccc--HHHHHHHHHH----cC---C
Q 006633 198 PRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-N---ILAVSFAPRDT--HEAQVQFALE----RG---V 264 (637)
Q Consensus 198 ~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-~---v~~vdisp~Dl--s~a~i~~A~e----rg---~ 264 (637)
++-.-..+..+.+.+++.++. ..+|||||.|......+-. + ..++.+.+.-. +..+.+...+ .+ .
T Consensus 24 GEi~~~~~~~il~~~~l~~~d--vF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~ 101 (205)
T PF08123_consen 24 GEISPEFVSKILDELNLTPDD--VFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPG 101 (205)
T ss_dssp GGCHHHHHHHHHHHTT--TT---EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---
T ss_pred eecCHHHHHHHHHHhCCCCCC--EEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 344445556666777666555 9999999999876555433 3 45666644211 1111111111 12 2
Q ss_pred CeEEEEeccccCCCCC---CCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 265 PALIGVMASIRLPYPS---RAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 265 ~~~~~~~d~~~Lpfpd---~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
++.+..+|....++.. ..-|+|+++... +.+ +....|.++..-||+|-.++-.
T Consensus 102 ~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~-~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 102 KVELIHGDFLDPDFVKDIWSDADVVFVNNTC--FDP-DLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp EEEEECS-TTTHHHHHHHGHC-SEEEE--TT--T-H-HHHHHHHHHHTTS-TT-EEEES
T ss_pred cceeeccCccccHhHhhhhcCCCEEEEeccc--cCH-HHHHHHHHHHhcCCCCCEEEEC
Confidence 3445555543322110 236999997643 333 5666778888899999887643
No 335
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=96.27 E-value=0.0047 Score=63.80 Aligned_cols=99 Identities=13% Similarity=0.143 Sum_probs=69.8
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc-cchhhc--------cccccCCCCCccceeeecc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IGTYQN--------WCEAMSTYPRTYDLIHADS 548 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-~~~~~~--------wce~~~~yp~t~Dl~H~~~ 548 (637)
.++|||+|||.|-....|+..+ -+|+.+|....++.++-|.-= -.+.-. -|+...-.-..||.|-|.-
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHH
Confidence 5789999999999999998887 588899999889999887721 001100 0111111212399888855
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV 582 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 582 (637)
+...+ -+.+.++--+=+.|+|||.++|++-.
T Consensus 167 vleHV---~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 167 VLEHV---KDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred HHHHH---hCHHHHHHHHHHHhCCCCceEeeehh
Confidence 54433 45578889999999999999998643
No 336
>PLN03075 nicotianamine synthase; Provisional
Probab=96.26 E-value=0.025 Score=60.00 Aligned_cols=137 Identities=11% Similarity=0.069 Sum_probs=80.2
Q ss_pred CceeEeeecccchhhhhhhcC----CCeEEEEeccCCCCcchhHHHHh-----hcc---cchh-hccccccCCCC--Ccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVD----DPLWVMNTVPVEAKINTLGVIYE-----RGL---IGTY-QNWCEAMSTYP--RTY 541 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~----~~v~~mnv~~~~~~~~~l~~~~e-----Rgl---~~~~-~~wce~~~~yp--~t~ 541 (637)
.-++|+|+|||-|++-+.+.. .+. -+..+|.++..++.+.+ .|| +... +|..+ ..+ ..|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~---~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~---~~~~l~~F 196 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTT---SFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMD---VTESLKEY 196 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhh---cccccCCc
Confidence 578999999998877555432 122 23444555555554432 333 1111 12222 232 689
Q ss_pred ceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC---HHHHHHHHHHHhcCCceeEEeccCCCCCCcceEEEEE
Q 006633 542 DLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD---VDILVKIKSITDGMEWEGRIADHENGPRQREKILFAN 618 (637)
Q Consensus 542 Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~---~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~ 618 (637)
|+|=+.-+ .|.+.-+.+.+|-.+-|.|||||+++++-- ...+..+-+...-=.|+....-|-.++ +-.-++|++
T Consensus 197 DlVF~~AL--i~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~gf~~~~~~~P~~~-v~Nsvi~~r 273 (296)
T PLN03075 197 DVVFLAAL--VGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLRGFEVLSVFHPTDE-VINSVIIAR 273 (296)
T ss_pred CEEEEecc--cccccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCCCeEEEEEECCCCC-ceeeEEEEE
Confidence 99888521 233345668999999999999999999841 222222111111117888765555444 457789999
Q ss_pred ecCC
Q 006633 619 KKYW 622 (637)
Q Consensus 619 K~~w 622 (637)
|.--
T Consensus 274 ~~~~ 277 (296)
T PLN03075 274 KPGG 277 (296)
T ss_pred eecC
Confidence 9663
No 337
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.26 E-value=0.017 Score=50.33 Aligned_cols=95 Identities=19% Similarity=0.309 Sum_probs=57.0
Q ss_pred Eeeecccchh--hhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc------cc-hhhccccccCCCCC--ccceeeeccc
Q 006633 481 LLDMNAYLGG--FAAALVDDPLWVMNTVPVEAKINTLGVIYERGL------IG-TYQNWCEAMSTYPR--TYDLIHADSI 549 (637)
Q Consensus 481 vlD~~~g~gg--faa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl------~~-~~~~wce~~~~yp~--t~Dl~H~~~l 549 (637)
++|+|||.|. +.+.+......+.. .|.+..++.....+.. +. ...+......+++. +||++ +...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVG---VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEE---EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 9999999998 45555554323333 4444445555333331 11 12122222233433 89998 6333
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV 582 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 582 (637)
...+.. ...++.++.|+|+|+|.+++.+..
T Consensus 128 ~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHLLP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 332222 689999999999999999998654
No 338
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.24 E-value=0.022 Score=63.65 Aligned_cols=114 Identities=20% Similarity=0.246 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcC-CCeEEEEeccccCCC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERG-VPALIGVMASIRLPY 278 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg-~~~~~~~~d~~~Lpf 278 (637)
+.+++...+.++..++. ++||+=||.|.|+..|+++ .|.++++++..+..++.+ |..++ .++.|..+++++..-
T Consensus 279 ekl~~~a~~~~~~~~~~--~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~N-A~~n~i~N~~f~~~~ae~~~~ 355 (432)
T COG2265 279 EKLYETALEWLELAGGE--RVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQEN-AAANGIDNVEFIAGDAEEFTP 355 (432)
T ss_pred HHHHHHHHHHHhhcCCC--EEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHH-HHHcCCCcEEEEeCCHHHHhh
Confidence 33444555555544434 8999999999999999977 677787777655544443 33444 458888888776653
Q ss_pred C---CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCC
Q 006633 279 P---SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPP 323 (637)
Q Consensus 279 p---d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp 323 (637)
. ...+|.|+.-.--.. -...+++.+.+ ++|-..+++|..|
T Consensus 356 ~~~~~~~~d~VvvDPPR~G----~~~~~lk~l~~-~~p~~IvYVSCNP 398 (432)
T COG2265 356 AWWEGYKPDVVVVDPPRAG----ADREVLKQLAK-LKPKRIVYVSCNP 398 (432)
T ss_pred hccccCCCCEEEECCCCCC----CCHHHHHHHHh-cCCCcEEEEeCCH
Confidence 2 357899997542211 22345555544 5788889998653
No 339
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.19 E-value=0.0072 Score=64.93 Aligned_cols=93 Identities=18% Similarity=0.070 Sum_probs=54.8
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHh----hcccchhhccccccCC-C--CCccceeeecccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGLIGTYQNWCEAMST-Y--PRTYDLIHADSIF 550 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgl~~~~~~wce~~~~-y--p~t~Dl~H~~~lf 550 (637)
..+|||+|||+|.+++.|++.---.-.|+.+|..+.++..+.+ .|+ .-++..+..... . ...||+|.++
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~~~~fD~Ii~~--- 156 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPEFAPYDVIFVT--- 156 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccccCCccEEEEC---
Confidence 4689999999999999887531000013444555566666554 344 111112222211 1 2579998873
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 551 SLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 551 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
..++.+.-.+-+.|+|||.+++-.
T Consensus 157 ------~g~~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 157 ------VGVDEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ------CchHHhHHHHHHhcCCCCEEEEEe
Confidence 223344455678999999998854
No 340
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=96.13 E-value=0.011 Score=60.48 Aligned_cols=113 Identities=18% Similarity=0.195 Sum_probs=76.3
Q ss_pred eeEeeecccchhhhhhhcCC----CeEEEEeccCCCCcchhHHHHhhcc--cchhhccc-cccCCCC--Cccceeeeccc
Q 006633 479 RNLLDMNAYLGGFAAALVDD----PLWVMNTVPVEAKINTLGVIYERGL--IGTYQNWC-EAMSTYP--RTYDLIHADSI 549 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~----~v~~mnv~~~~~~~~~l~~~~eRgl--~~~~~~wc-e~~~~yp--~t~Dl~H~~~l 549 (637)
..+|++|||.|.|=.+|+.+ +++.+-+-..... .-+..|-+.|| +-++..=+ +-+..++ .+.|-|+. .
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~-~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i--~ 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVA-KALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYI--N 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHH-HHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEE--E
Confidence 58999999999999999865 3444444443332 45667778888 55554223 4444454 49998887 5
Q ss_pred cc-------cCCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHH-HHHHHhc
Q 006633 550 FS-------LYKDRCEMEDVLLEMDRILRPEGSVIIR-DDVDILVK-IKSITDG 594 (637)
Q Consensus 550 fs-------~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~-~~~~~~~ 594 (637)
|. ..+.|=--+..|-++.|+|+|||.+.+. |..+..+. +.+....
T Consensus 127 FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~ 180 (227)
T COG0220 127 FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEH 180 (227)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhc
Confidence 66 2234434458889999999999999994 76666665 5555443
No 341
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.12 E-value=0.018 Score=59.49 Aligned_cols=98 Identities=17% Similarity=0.192 Sum_probs=64.2
Q ss_pred CCCEEEEECCCCchHHHHHhhcC----CEEEEcCccccHHHHHHHHHHc---------CCCeEEEEeccccC-CCCCC-C
Q 006633 218 SIRTAIDTGCGVASWGAYLMSRN----ILAVSFAPRDTHEAQVQFALER---------GVPALIGVMASIRL-PYPSR-A 282 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~----v~~vdisp~Dls~a~i~~A~er---------g~~~~~~~~d~~~L-pfpd~-s 282 (637)
..++||=||-|.|..+..+++.. ++++++++ ..++.|++- ...+.+...|.... .-..+ .
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~-----~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~ 150 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDP-----EVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEK 150 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-H-----HHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecCh-----HHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCc
Confidence 46699999999999999998863 56666644 444444421 24577777775432 11223 8
Q ss_pred eeEEEeccccccCCcC---CHHHHHHHHHhcccCCeEEEEEe
Q 006633 283 FDMAHCSRCLIPWGQY---ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 283 FDlV~~s~~L~h~~~~---d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
||+|+.-..- +.... ....+++.+.+.|+|||.+++..
T Consensus 151 yDvIi~D~~d-p~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 151 YDVIIVDLTD-PDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEEEESSS-TTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccEEEEeCCC-CCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 9999973322 22210 23578999999999999999975
No 342
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=96.12 E-value=0.029 Score=57.98 Aligned_cols=107 Identities=16% Similarity=0.232 Sum_probs=71.9
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhcccc-ccCCC-CCccceee-eccccccC
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCE-AMSTY-PRTYDLIH-ADSIFSLY 553 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce-~~~~y-p~t~Dl~H-~~~lfs~~ 553 (637)
.--.|-|||||-|-.|. =...+|..|-+++.+.. ++ -|. +-.+. .+|-|++- |-.|.
T Consensus 180 ~~~vIaD~GCGEakiA~-~~~~kV~SfDL~a~~~~-----------V~-----~cDm~~vPl~d~svDvaV~CLSLM--- 239 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS-SERHKVHSFDLVAVNER-----------VI-----ACDMRNVPLEDESVDVAVFCLSLM--- 239 (325)
T ss_pred CceEEEecccchhhhhh-ccccceeeeeeecCCCc-----------ee-----eccccCCcCccCcccEEEeeHhhh---
Confidence 45678999999886654 23457899999988765 11 121 11222 38999854 32222
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEeCHHH---HHHHHHHHhcCCceeEEeccC
Q 006633 554 KDRCEMEDVLLEMDRILRPEGSVIIRDDVDI---LVKIKSITDGMEWEGRIADHE 605 (637)
Q Consensus 554 ~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~---~~~~~~~~~~~~W~~~~~~~e 605 (637)
.-++.+.+.|..|||+|||.++|.+-... +....+-+..|..+....|.+
T Consensus 240 --gtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 240 --GTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred --cccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhh
Confidence 24677999999999999999999764432 233445577888888776655
No 343
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.09 E-value=0.02 Score=60.97 Aligned_cols=100 Identities=10% Similarity=0.075 Sum_probs=57.1
Q ss_pred CCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCCC--eEEEEeccccCCCCCCCeeEEEecccc
Q 006633 218 SIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGVP--ALIGVMASIRLPYPSRAFDMAHCSRCL 292 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~~--~~~~~~d~~~Lpfpd~sFDlV~~s~~L 292 (637)
.++.|||+|||+|.+....+..| |.++.. ....+...+....++.. +.+..+..++..+| +..|+|++-..-
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEA--S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG 253 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEA--SEMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMG 253 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEeh--hHHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccch
Confidence 46799999999998887777764 454443 22222222222223332 34444445555555 568999986543
Q ss_pred ccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 293 IPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 293 ~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
.-+..+..-...--..|.|||.|.++=+
T Consensus 254 ~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 254 YMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 2222111112223356999999998765
No 344
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.09 E-value=0.028 Score=61.93 Aligned_cols=100 Identities=14% Similarity=0.074 Sum_probs=67.5
Q ss_pred CCEEEEECCCCchHHHHHhhcCC-EEEEcCccccHHHHHHHHHHc----CC---CeEEEEeccccC-C---CCCCCeeEE
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GV---PALIGVMASIRL-P---YPSRAFDMA 286 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v-~~vdisp~Dls~a~i~~A~er----g~---~~~~~~~d~~~L-p---fpd~sFDlV 286 (637)
+++|||+=|=||.|+.+.+..|. .++.+ |.+...++.|+++ ++ ...|.++|+... . -....||+|
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~V---D~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSV---DLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEE---eccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 45999999999999999998765 44444 5555555555543 33 356777775332 2 224589999
Q ss_pred Eecc-cc-------ccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 287 HCSR-CL-------IPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 287 ~~s~-~L-------~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+.-. .| ..... +...++..+.++|+|||.++++..
T Consensus 295 ilDPPsF~r~k~~~~~~~r-dy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 295 ILDPPSFARSKKQEFSAQR-DYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred EECCcccccCcccchhHHH-HHHHHHHHHHHHcCCCCEEEEEec
Confidence 9721 11 01111 555789999999999999999864
No 345
>PRK04148 hypothetical protein; Provisional
Probab=96.08 E-value=0.027 Score=53.04 Aligned_cols=96 Identities=13% Similarity=0.122 Sum_probs=71.6
Q ss_pred CCceeEeeecccchh-hhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhccccccCCCCCccceeeeccccccCC
Q 006633 476 GRYRNLLDMNAYLGG-FAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYK 554 (637)
Q Consensus 476 ~~~r~vlD~~~g~gg-faa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~yp~t~Dl~H~~~lfs~~~ 554 (637)
++.+.|+|+|||+|. +|..|.+.+. .|+.+|.++..++-+.++|+-.+..|+-+.-...=+.+|+|-+
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liys-------- 83 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYS-------- 83 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEE--------
Confidence 344679999999996 9999998876 6667788878888899998855554433211111167888888
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCceeEEeccC
Q 006633 555 DRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHE 605 (637)
Q Consensus 555 ~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e 605 (637)
||-..+.+..+.++++++.=++.+.-..
T Consensus 84 -----------------------irpp~el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 84 -----------------------IRPPRDLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred -----------------------eCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 6677888899999999999998876544
No 346
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.05 E-value=0.024 Score=59.01 Aligned_cols=83 Identities=22% Similarity=0.301 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHHcCCC----eEEEEeccccC
Q 006633 203 AYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALERGVP----ALIGVMASIRL 276 (637)
Q Consensus 203 ~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~erg~~----~~~~~~d~~~L 276 (637)
..++.|.+..+++++. .|||+|.|||.++..|++.+ |.+++++|.++.+-..+. .|.+ ..+..+|....
T Consensus 45 ~v~~~I~~ka~~k~tD--~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv---~gtp~~~kLqV~~gD~lK~ 119 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTD--VVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRV---QGTPKSGKLQVLHGDFLKT 119 (315)
T ss_pred HHHHHHHhccCCCCCC--EEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHh---cCCCccceeeEEecccccC
Confidence 3456666666666655 99999999999999999985 556666555444322221 2333 56666676665
Q ss_pred CCCCCCeeEEEecccc
Q 006633 277 PYPSRAFDMAHCSRCL 292 (637)
Q Consensus 277 pfpd~sFDlV~~s~~L 292 (637)
++| .||.++++.-.
T Consensus 120 d~P--~fd~cVsNlPy 133 (315)
T KOG0820|consen 120 DLP--RFDGCVSNLPY 133 (315)
T ss_pred CCc--ccceeeccCCc
Confidence 554 59999987533
No 347
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=95.98 E-value=0.008 Score=57.80 Aligned_cols=70 Identities=19% Similarity=0.181 Sum_probs=47.8
Q ss_pred CCCCcchhHHHHhhcc---------cchhhccccccCCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEE
Q 006633 508 VEAKINTLGVIYERGL---------IGTYQNWCEAMSTYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVI 577 (637)
Q Consensus 508 ~~~~~~~l~~~~eRgl---------~~~~~~wce~~~~yp-~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i 577 (637)
+|-+++||.++.+|-- +..++.=++.++ ++ .+||+|=+..++... .+....|-|+.|+|||||.++
T Consensus 3 vD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~v~~~~~l~~~---~d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 3 LDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLP-FDDCEFDAVTMGYGLRNV---VDRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred EcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCC-CCCCCeeEEEecchhhcC---CCHHHHHHHHHHHcCcCeEEE
Confidence 4667789998866521 233332234443 44 799998775444433 356899999999999999999
Q ss_pred EEeC
Q 006633 578 IRDD 581 (637)
Q Consensus 578 ~~d~ 581 (637)
|.|-
T Consensus 79 i~d~ 82 (160)
T PLN02232 79 ILDF 82 (160)
T ss_pred EEEC
Confidence 8764
No 348
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=95.96 E-value=0.017 Score=64.89 Aligned_cols=123 Identities=21% Similarity=0.333 Sum_probs=64.4
Q ss_pred cchhcchhhHHHHHH---HHHHHHHhhhccCCCCC----ceeEeeecccchhhhhhh------cCCCeEEEEeccCCCCc
Q 006633 446 VTAEMFREDTALWKK---RVTYYKSVDYQLAQPGR----YRNLLDMNAYLGGFAAAL------VDDPLWVMNTVPVEAKI 512 (637)
Q Consensus 446 ~~~~~f~~d~~~w~~---~v~~y~~~~~~l~~~~~----~r~vlD~~~g~ggfaa~l------~~~~v~~mnv~~~~~~~ 512 (637)
.+-|.|+.|..++.. .|. +.+...+.. .+ .-+|||+|||.|-...+- ....+- |..++.++
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~--~al~D~~~~-~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~---VyAVEkn~ 224 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIE--EALKDRVRK-NSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVK---VYAVEKNP 224 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHH--HHHHHHHTT-S-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESE---EEEEESST
T ss_pred ccHhhHhcCHHHHHHHHHHHH--HHHHhhhhh-ccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeE---EEEEcCCH
Confidence 467899999765553 232 122122233 22 467999999999885211 111222 22223332
Q ss_pred c---hhH-HHHhhcc---cchhhccccccCCC--CCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEE
Q 006633 513 N---TLG-VIYERGL---IGTYQNWCEAMSTY--PRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVII 578 (637)
Q Consensus 513 ~---~l~-~~~eRgl---~~~~~~wce~~~~y--p~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 578 (637)
+ +++ .+.+.|+ |.++| +..... |.-.|+|=. -++..+...-.++..|.-.||.|+|||.+|=
T Consensus 225 ~A~~~l~~~v~~n~w~~~V~vi~---~d~r~v~lpekvDIIVS-ElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 225 NAVVTLQKRVNANGWGDKVTVIH---GDMREVELPEKVDIIVS-ELLGSFGDNELSPECLDAADRFLKPDGIMIP 295 (448)
T ss_dssp HHHHHHHHHHHHTTTTTTEEEEE---S-TTTSCHSS-EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred hHHHHHHHHHHhcCCCCeEEEEe---CcccCCCCCCceeEEEE-eccCCccccccCHHHHHHHHhhcCCCCEEeC
Confidence 2 332 2244454 44554 444444 678898764 3443334444778899999999999998763
No 349
>PRK03612 spermidine synthase; Provisional
Probab=95.95 E-value=0.017 Score=65.96 Aligned_cols=123 Identities=13% Similarity=0.107 Sum_probs=73.2
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhc-c------------cchhh-ccccccCCCCCcc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG-L------------IGTYQ-NWCEAMSTYPRTY 541 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg-l------------~~~~~-~wce~~~~yp~t~ 541 (637)
.+.++|||+|||.|+.+..+.+++- +..|+-+|..+..++.+.+.- + +-+++ |-=+-+...++.|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 3467899999999999988877642 134444555556888887631 1 11111 1001122346899
Q ss_pred ceeeeccccccCCCC-c-C-HHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCceeE
Q 006633 542 DLIHADSIFSLYKDR-C-E-MEDVLLEMDRILRPEGSVIIRD-----DVDILVKIKSITDGMEWEGR 600 (637)
Q Consensus 542 Dl~H~~~lfs~~~~~-c-~-~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~~~W~~~ 600 (637)
|+|-+|--. ..... . . -++++-++-|.|+|||.+++.. ..+....+.+.+++....+.
T Consensus 375 DvIi~D~~~-~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~ 440 (521)
T PRK03612 375 DVIIVDLPD-PSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATT 440 (521)
T ss_pred CEEEEeCCC-CCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEEE
Confidence 999886221 11100 0 1 1357778899999999999952 34455566666666544443
No 350
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=95.91 E-value=0.019 Score=64.13 Aligned_cols=114 Identities=17% Similarity=0.215 Sum_probs=66.1
Q ss_pred ceeEeeecccchhhhhhhcCC--CeEEEEeccCCCCcchhHHHHhh----cccchhhccccccCC-------CCCcccee
Q 006633 478 YRNLLDMNAYLGGFAAALVDD--PLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMST-------YPRTYDLI 544 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wce~~~~-------yp~t~Dl~ 544 (637)
...|||||||.||++.+|++. +- -.|+..|.+..++..+.++ |+ .-+.--|..... .+.+||.|
T Consensus 253 g~~VLDl~ag~G~kt~~la~~~~~~--g~v~a~D~~~~rl~~~~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAELMGDQ--GEIWAVDRSASRLKKLQENAQRLGL-KSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHHhCCC--ceEEEEcCCHHHHHHHHHHHHHcCC-CeEEEEeCChhhcccccccccccCCEE
Confidence 467999999999999888764 10 1345556666677666543 33 111111222222 23689987
Q ss_pred eec------cccccCCC------CcC-------HHHHHHHHhhcccCCcEEEEEe----CHHHHHHHHHHHhc
Q 006633 545 HAD------SIFSLYKD------RCE-------MEDVLLEMDRILRPEGSVIIRD----DVDILVKIKSITDG 594 (637)
Q Consensus 545 H~~------~lfs~~~~------~c~-------~~~~l~e~dRiLrPgG~~i~~d----~~~~~~~~~~~~~~ 594 (637)
=++ |++....+ ..+ ...+|-++-|+|||||.++.+. ..+....|+.+++.
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~ 402 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLAR 402 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHh
Confidence 754 23321110 011 2478999999999999999763 22334445555544
No 351
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=95.90 E-value=0.029 Score=57.56 Aligned_cols=128 Identities=11% Similarity=0.127 Sum_probs=70.7
Q ss_pred CceeEeeecccchhhhhhh----cCCCeEEEEeccCCCCcchhHHHHh----hcc---cchhh-ccccccCC----C-CC
Q 006633 477 RYRNLLDMNAYLGGFAAAL----VDDPLWVMNTVPVEAKINTLGVIYE----RGL---IGTYQ-NWCEAMST----Y-PR 539 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l----~~~~v~~mnv~~~~~~~~~l~~~~e----Rgl---~~~~~-~wce~~~~----y-p~ 539 (637)
.-++|||+|||+|.-+.+| .... .|+-+|..+..+.++.+ -|+ |.+.+ |..+.+.. . ..
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g----~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~ 143 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDG----RITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKP 143 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCC----EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCC
Confidence 3779999999999644433 2222 22333444344444433 344 22222 33333322 2 36
Q ss_pred ccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe---------CH--------HHHHHHHHH----HhcCCce
Q 006633 540 TYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD---------DV--------DILVKIKSI----TDGMEWE 598 (637)
Q Consensus 540 t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d---------~~--------~~~~~~~~~----~~~~~W~ 598 (637)
+||+|-+++-= -....++-++-|.|||||.+++-+ .. ....+|+++ ...=+|.
T Consensus 144 ~fD~VfiDa~k------~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~ 217 (234)
T PLN02781 144 EFDFAFVDADK------PNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVE 217 (234)
T ss_pred CCCEEEECCCH------HHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeE
Confidence 89999874321 233467778889999999998631 10 122344443 4444566
Q ss_pred eEEeccCCCCCCcceEEEEEec
Q 006633 599 GRIADHENGPRQREKILFANKK 620 (637)
Q Consensus 599 ~~~~~~e~~~~~~~~~l~~~K~ 620 (637)
..+.-. .+.+++++|.
T Consensus 218 ~~~lp~------gdG~~i~~k~ 233 (234)
T PLN02781 218 ISQISI------GDGVTLCRRL 233 (234)
T ss_pred EEEEEe------CCccEEEEEe
Confidence 665532 3678888875
No 352
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=95.83 E-value=0.15 Score=53.15 Aligned_cols=104 Identities=18% Similarity=0.250 Sum_probs=70.2
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHH----cCC--CeEEEEecc
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALE----RGV--PALIGVMAS 273 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~e----rg~--~~~~~~~d~ 273 (637)
+..|..++...+|+ +||+-|.|+|+++.++++. .+... |+++...+.|++ .++ ++.+..-|.
T Consensus 94 ia~I~~~L~i~PGs--vV~EsGTGSGSlShaiaraV~ptGhl~tf-----efH~~Ra~ka~eeFr~hgi~~~vt~~hrDV 166 (314)
T KOG2915|consen 94 IAMILSMLEIRPGS--VVLESGTGSGSLSHAIARAVAPTGHLYTF-----EFHETRAEKALEEFREHGIGDNVTVTHRDV 166 (314)
T ss_pred HHHHHHHhcCCCCC--EEEecCCCcchHHHHHHHhhCcCcceEEE-----EecHHHHHHHHHHHHHhCCCcceEEEEeec
Confidence 55788888888888 9999999999999998876 24444 446555555553 233 456666666
Q ss_pred ccCCC--CCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCe-EEEEEeC
Q 006633 274 IRLPY--PSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGG-YWILSGP 322 (637)
Q Consensus 274 ~~Lpf--pd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG-~Lvls~p 322 (637)
...-| .+..+|.|+.- ++ .+-.++--++.+||.+| +|+-..|
T Consensus 167 c~~GF~~ks~~aDaVFLD-----lP--aPw~AiPha~~~lk~~g~r~csFSP 211 (314)
T KOG2915|consen 167 CGSGFLIKSLKADAVFLD-----LP--APWEAIPHAAKILKDEGGRLCSFSP 211 (314)
T ss_pred ccCCccccccccceEEEc-----CC--ChhhhhhhhHHHhhhcCceEEeccH
Confidence 65554 46789999863 33 34446666777898877 4444344
No 353
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.74 E-value=0.082 Score=53.89 Aligned_cols=108 Identities=17% Similarity=0.162 Sum_probs=67.9
Q ss_pred HHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCC--CeEEEEecccc-C-
Q 006633 206 DDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGV--PALIGVMASIR-L- 276 (637)
Q Consensus 206 ~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~--~~~~~~~d~~~-L- 276 (637)
..+..++.....+ +.||||.=||.-+..++.. .+.++++.+...... .++....++ .+.+.++.+.. |
T Consensus 63 ~fl~~li~~~~ak--~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~-~~~~k~agv~~KI~~i~g~a~esLd 139 (237)
T KOG1663|consen 63 QFLQMLIRLLNAK--RTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIG-LELVKLAGVDHKITFIEGPALESLD 139 (237)
T ss_pred HHHHHHHHHhCCc--eEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHh-HHHHHhccccceeeeeecchhhhHH
Confidence 3444444444433 8999998888666555544 467777754322222 223333343 34555544322 2
Q ss_pred ----CCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 277 ----PYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 277 ----pfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
..+.++||+|+. .||.. +-..+++++.++||+||.+++..
T Consensus 140 ~l~~~~~~~tfDfaFv----DadK~-nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 140 ELLADGESGTFDFAFV----DADKD-NYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred HHHhcCCCCceeEEEE----ccchH-HHHHHHHHHHhhcccccEEEEec
Confidence 145789999985 36776 56689999999999999999973
No 354
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=95.70 E-value=0.019 Score=63.46 Aligned_cols=123 Identities=17% Similarity=0.191 Sum_probs=72.7
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----ccc----chhh-ccccccCCC---CCccceee
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLI----GTYQ-NWCEAMSTY---PRTYDLIH 545 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl~----~~~~-~wce~~~~y---p~t~Dl~H 545 (637)
.++|||++||+|+|+-+++..+- -.|+.+|.++..+..+.+- |+- -+++ |.-+.+..+ .++||+|=
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 46899999999999866544432 2445556666677655431 331 1111 222222223 25899988
Q ss_pred ecccc-ccCC-----CCcCHHHHHHHHhhcccCCcEEEEEe------CHHHHHHHHHHHhcCCceeEEe
Q 006633 546 ADSIF-SLYK-----DRCEMEDVLLEMDRILRPEGSVIIRD------DVDILVKIKSITDGMEWEGRIA 602 (637)
Q Consensus 546 ~~~lf-s~~~-----~~c~~~~~l~e~dRiLrPgG~~i~~d------~~~~~~~~~~~~~~~~W~~~~~ 602 (637)
+|-=+ +..+ ......+++.-.-++|+|||.++... ..+..+.+.+.+..-..++++.
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l 367 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFI 367 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 86443 1111 11245566667789999999999842 2345566666676666666654
No 355
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.69 E-value=0.19 Score=51.51 Aligned_cols=132 Identities=19% Similarity=0.201 Sum_probs=85.5
Q ss_pred CCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCCCeE-EEEeccccCC---CCCCCeeEEEecc
Q 006633 218 SIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGVPAL-IGVMASIRLP---YPSRAFDMAHCSR 290 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~~~~-~~~~d~~~Lp---fpd~sFDlV~~s~ 290 (637)
.++.+||+|+-||.|+-.++++| |.++|+.- .|+.--.+....+. +...++..+. +. +..|+|+|--
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~-----~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~Dv 152 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGY-----GQLHWKLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDV 152 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccC-----CccCHhHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEe
Confidence 35699999999999999999984 56666633 33333333333332 2223333332 22 3678999976
Q ss_pred ccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccc----cccCCCCchhhhHHhHhhHHHHHHHhceeeec
Q 006633 291 CLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWES----HWKGWNRTTEDLKSEQNGIETIARSLCWKKLI 360 (637)
Q Consensus 291 ~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~----~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~ 360 (637)
.|+ ....+|..+..+|+|+|.++.-.-|.--.. ..++--+.++.......++++.++..+|....
T Consensus 153 SFI-----SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~g 221 (245)
T COG1189 153 SFI-----SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKG 221 (245)
T ss_pred ehh-----hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEee
Confidence 664 456699999999999999988753321111 12223345556666777899999999997653
No 356
>PHA03411 putative methyltransferase; Provisional
Probab=95.53 E-value=0.018 Score=60.51 Aligned_cols=99 Identities=14% Similarity=0.176 Sum_probs=65.9
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhccccccCCCC--CccceeeeccccccCC-
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYP--RTYDLIHADSIFSLYK- 554 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~yp--~t~Dl~H~~~lfs~~~- 554 (637)
..+|||+|||.|.++..+.++.- ..+|+.+|.++.++..+.++ +.. ..-.+..+..++ ++||+|=++-=|-...
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n-~~~-v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRL-LPE-AEWITSDVFEFESNEKFDVVISNPPFGKINT 141 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHh-CcC-CEEEECchhhhcccCCCcEEEEcCCccccCc
Confidence 34799999999999888866410 13567777777888888765 211 111233444443 7899988866665311
Q ss_pred ----C-----------Cc-CHHHHHHHHhhcccCCcEEEEE
Q 006633 555 ----D-----------RC-EMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 555 ----~-----------~c-~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
. .+ .+...+...-++|.|+|.+++-
T Consensus 142 ~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 142 TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 0 11 2467888899999999988774
No 357
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=95.44 E-value=0.086 Score=59.05 Aligned_cols=131 Identities=18% Similarity=0.275 Sum_probs=79.9
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc--cchhh-ccccccCC--CC-Cccceeeec
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMST--YP-RTYDLIHAD 547 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~-~wce~~~~--yp-~t~Dl~H~~ 547 (637)
...|||+|||+|.|+.+|++.. ..|+.+|.++.++..+.+. |+ +-.++ |+-+.+.. ++ .+||+|-+|
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 4689999999999999998774 4677788888888877653 33 22222 33232322 32 679987652
Q ss_pred cccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCceeE---EeccCCCCCCcceEEEEEe
Q 006633 548 SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV-DILVKIKSITDGMEWEGR---IADHENGPRQREKILFANK 619 (637)
Q Consensus 548 ~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~~~W~~~---~~~~e~~~~~~~~~l~~~K 619 (637)
- .|..+..++-.+-+ |.|++.++++=+. ..-..+..+.+ -.|++. .+|.-.....=|-|.+.+|
T Consensus 375 P------Pr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~-~gY~l~~i~~~DmFP~T~HvE~v~lL~r 442 (443)
T PRK13168 375 P------PRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVE-AGYRLKRAGMLDMFPHTGHVESMALFER 442 (443)
T ss_pred c------CCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhh-CCcEEEEEEEeccCCCCCcEEEEEEEEe
Confidence 1 23334556655555 6999999999444 44455555543 236654 4454444434465555543
No 358
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=95.42 E-value=0.064 Score=54.14 Aligned_cols=109 Identities=14% Similarity=0.164 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCC---EEEEcCccccHHHHHHHHHHcC----CCeEEEEeccc
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNI---LAVSFAPRDTHEAQVQFALERG----VPALIGVMASI 274 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v---~~vdisp~Dls~a~i~~A~erg----~~~~~~~~d~~ 274 (637)
..+...+++.+.. .+++||.||-|-|.....+.++.. ..+.. ++...+.-++.+ .++.+..+--+
T Consensus 88 tpiMha~A~ai~t---kggrvLnVGFGMgIidT~iQe~~p~~H~IiE~-----hp~V~krmr~~gw~ek~nViil~g~We 159 (271)
T KOG1709|consen 88 TPIMHALAEAIST---KGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEA-----HPDVLKRMRDWGWREKENVIILEGRWE 159 (271)
T ss_pred hHHHHHHHHHHhh---CCceEEEeccchHHHHHHHhhcCCcceEEEec-----CHHHHHHHHhcccccccceEEEecchH
Confidence 4456666666653 355899999999998888877743 33433 333333333333 23333333222
Q ss_pred c-C-CCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 275 R-L-PYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 275 ~-L-pfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
+ + .++++.||-|+--..-.+.. |...+.+-+.|+|||+|.|-+-
T Consensus 160 Dvl~~L~d~~FDGI~yDTy~e~yE--dl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 160 DVLNTLPDKHFDGIYYDTYSELYE--DLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred hhhccccccCcceeEeechhhHHH--HHHHHHHHHhhhcCCCceEEEe
Confidence 1 2 26788999999743223333 7888899999999999999775
No 359
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=95.42 E-value=0.16 Score=55.07 Aligned_cols=117 Identities=13% Similarity=0.084 Sum_probs=76.6
Q ss_pred CCCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHHcCCC--eEEE
Q 006633 195 TMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALERGVP--ALIG 269 (637)
Q Consensus 195 ~~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~erg~~--~~~~ 269 (637)
.+|..+...--.++.++.. .|. +|||.=+|.|.|+..++..+ |.++|+.|..+. ...+.++-+++. +...
T Consensus 169 v~Fsprl~~ER~Rva~~v~--~GE--~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~-~L~eNi~LN~v~~~v~~i 243 (341)
T COG2520 169 VYFSPRLSTERARVAELVK--EGE--TVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVE-YLKENIRLNKVEGRVEPI 243 (341)
T ss_pred eEECCCchHHHHHHHhhhc--CCC--EEEEccCCcccchhhhhhcCCceEEEEecCHHHHH-HHHHHHHhcCccceeeEE
Confidence 3343433333334555543 344 99999999999999999874 555666553222 222233333332 5567
Q ss_pred EeccccCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 270 VMASIRLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 270 ~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.+|....+...+.||-|+....- ....++..+.+.|++||.+-+-..
T Consensus 244 ~gD~rev~~~~~~aDrIim~~p~------~a~~fl~~A~~~~k~~g~iHyy~~ 290 (341)
T COG2520 244 LGDAREVAPELGVADRIIMGLPK------SAHEFLPLALELLKDGGIIHYYEF 290 (341)
T ss_pred eccHHHhhhccccCCEEEeCCCC------cchhhHHHHHHHhhcCcEEEEEec
Confidence 78887777666889999986422 556788999999999999988753
No 360
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=95.40 E-value=0.024 Score=58.06 Aligned_cols=97 Identities=18% Similarity=0.270 Sum_probs=68.9
Q ss_pred eEeeecccchhhhhhhcCC----CeEEEEeccCCCCcchhHHHHhhcc------cchhhccccccCCCC---Cccceeee
Q 006633 480 NLLDMNAYLGGFAAALVDD----PLWVMNTVPVEAKINTLGVIYERGL------IGTYQNWCEAMSTYP---RTYDLIHA 546 (637)
Q Consensus 480 ~vlD~~~g~ggfaa~l~~~----~v~~mnv~~~~~~~~~l~~~~eRgl------~~~~~~wce~~~~yp---~t~Dl~H~ 546 (637)
.+|.+|||.|.--.=|++. ++-++ .-|-+++-+.++-++-- -..++|.++.=..+| .++|+|-+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~---acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVY---ACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEE---EcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEE
Confidence 8999999999876666543 23333 33444466666655543 346667774434443 89999999
Q ss_pred ccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 547 DSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 547 ~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
.-++|.-.. -.+...+-.+.|+|+|||.+++||
T Consensus 151 IFvLSAi~p-ek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 151 IFVLSAIHP-EKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred EEEEeccCh-HHHHHHHHHHHHHhCCCcEEEEee
Confidence 888886542 256789999999999999999997
No 361
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=95.37 E-value=0.15 Score=55.63 Aligned_cols=112 Identities=18% Similarity=0.200 Sum_probs=66.1
Q ss_pred HHHHhcccCCCCCEEEEECCCCchHHHHHhhc----CC--EEEEcCccccHHHHHHHHHHcCCC-eEEEEeccccCC--C
Q 006633 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----NI--LAVSFAPRDTHEAQVQFALERGVP-ALIGVMASIRLP--Y 278 (637)
Q Consensus 208 L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~v--~~vdisp~Dls~a~i~~A~erg~~-~~~~~~d~~~Lp--f 278 (637)
...++...+| .+|||+.++.|.=+..|++. +. +++|+++.-+. ...+...+-|+. +.....|...++ .
T Consensus 148 ~a~~L~p~pg--e~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~-~l~~nl~RlG~~nv~~~~~d~~~~~~~~ 224 (355)
T COG0144 148 PALVLDPKPG--ERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLK-RLRENLKRLGVRNVIVVNKDARRLAELL 224 (355)
T ss_pred HHHHcCCCCc--CEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHH-HHHHHHHHcCCCceEEEecccccccccc
Confidence 3344555555 49999999999877777765 23 45555332111 112222233443 456666666554 2
Q ss_pred CC-CCeeEEEe------cccc-------ccCCcC-------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 279 PS-RAFDMAHC------SRCL-------IPWGQY-------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 279 pd-~sFDlV~~------s~~L-------~h~~~~-------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+. ..||.|+. ..++ ..+... -...+|..+.++|||||.|+.++-
T Consensus 225 ~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 225 PGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred cccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 22 35999995 2222 011110 234689999999999999999964
No 362
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=95.37 E-value=0.1 Score=51.70 Aligned_cols=140 Identities=19% Similarity=0.271 Sum_probs=81.9
Q ss_pred hhhHHHHHHHHHHHHHhhhccCCCCCceeEeeecccchh--hhhhhcCCCeEEEEeccCCCCcchh-HHHHhhcc--cch
Q 006633 452 REDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGG--FAAALVDDPLWVMNTVPVEAKINTL-GVIYERGL--IGT 526 (637)
Q Consensus 452 ~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~gg--faa~l~~~~v~~mnv~~~~~~~~~l-~~~~eRgl--~~~ 526 (637)
.+..+.|.+++-.=..+++.+.. ... +++|+|+|-|= .--|+.....=+.=|-+..-..+.| .++.+=|| +-+
T Consensus 25 ~~~~~~~~~Hi~DSL~~~~~~~~-~~~-~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v 102 (184)
T PF02527_consen 25 RDPEEIWERHILDSLALLPFLPD-FGK-KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEV 102 (184)
T ss_dssp -SHHHHHHHHHHHHHGGGGCS-C-CCS-EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEE
T ss_pred CCHHHHHHHHHHHHHHhhhhhcc-CCc-eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEE
Confidence 45568888888654445555554 222 69999999662 2223333332222222222222333 34445566 345
Q ss_pred hhccccccCCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE---eCHHHHHHHHHHHhcCCceeEE
Q 006633 527 YQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR---DDVDILVKIKSITDGMEWEGRI 601 (637)
Q Consensus 527 ~~~wce~~~~yp~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~---d~~~~~~~~~~~~~~~~W~~~~ 601 (637)
+|.-.|. ..++..||++=| .+-..+..++--+-+.|+|||.+++- +..+.+...++..+.+.++...
T Consensus 103 ~~~R~E~-~~~~~~fd~v~a-------RAv~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~~ 172 (184)
T PF02527_consen 103 INGRAEE-PEYRESFDVVTA-------RAVAPLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVLS 172 (184)
T ss_dssp EES-HHH-TTTTT-EEEEEE-------ESSSSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEEE
T ss_pred EEeeecc-cccCCCccEEEe-------ehhcCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEee
Confidence 5544455 457899999887 34466777777779999999999985 4456777777778888777664
No 363
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=95.34 E-value=0.22 Score=49.41 Aligned_cols=131 Identities=18% Similarity=0.204 Sum_probs=75.8
Q ss_pred CCeeecCCCCCCCcccHHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC---CEEEEcCccccHHHHHHHHHH
Q 006633 185 GDRFSFPGGGTMFPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN---ILAVSFAPRDTHEAQVQFALE 261 (637)
Q Consensus 185 g~~~~Fpg~g~~f~~g~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~---v~~vdisp~Dls~a~i~~A~e 261 (637)
|..+.+|.+... ....+..-+.+.+++....-.+.++||+=+|+|.++...+.+| ++.++.+ ....+..++
T Consensus 11 gr~L~~p~~~~~-RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~-----~~a~~~l~~ 84 (187)
T COG0742 11 GRKLKTPDGPGT-RPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKD-----RKAVKILKE 84 (187)
T ss_pred CCcccCCCCCCc-CCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecC-----HHHHHHHHH
Confidence 344555554332 3334556666777775421234599999999999999999995 3444442 222222222
Q ss_pred c----C--CCeEEEEeccccC-CCCCC--CeeEEEeccccccCCcCCHHHHHHH--HHhcccCCeEEEEEeC
Q 006633 262 R----G--VPALIGVMASIRL-PYPSR--AFDMAHCSRCLIPWGQYADGLYLIE--VDRVLRPGGYWILSGP 322 (637)
Q Consensus 262 r----g--~~~~~~~~d~~~L-pfpd~--sFDlV~~s~~L~h~~~~d~~~~L~e--i~RvLKPGG~Lvls~p 322 (637)
+ + ....+...|+... +-... .||+|+.-.-+. ..--+....+.. -..+|+|+|.+++...
T Consensus 85 N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~-~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 85 NLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYA-KGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred HHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCc-cchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 1 2 3455666665532 22222 499999876442 111022333333 4578999999999854
No 364
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.31 E-value=0.029 Score=53.33 Aligned_cols=74 Identities=18% Similarity=0.154 Sum_probs=49.1
Q ss_pred CCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccc
Q 006633 218 SIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCL 292 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L 292 (637)
.+..++|+|||.|-+.....-. -+.++|++|..+. -..+.|.+-.+.+.+.+++...+-+..+.||.++.+.-|
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALE-If~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALE-IFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHH-HHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 3558999999999776433322 4666666553222 222334444566778888888887788999999988754
No 365
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=95.25 E-value=0.021 Score=61.66 Aligned_cols=130 Identities=20% Similarity=0.342 Sum_probs=71.9
Q ss_pred hhHHHHHHHHH--HHHHhhhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhc--------
Q 006633 453 EDTALWKKRVT--YYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERG-------- 522 (637)
Q Consensus 453 ~d~~~w~~~v~--~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRg-------- 522 (637)
..-..|.+.+- .|.+. +........||||+||=||=---....+| -.++.+|-+..-+.-+.+|=
T Consensus 39 R~fNNwvKs~LI~~~~~~---~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry~~~~~~~~ 113 (331)
T PF03291_consen 39 RNFNNWVKSVLIQKYAKK---VKQNRPGLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERYKQLKKRNN 113 (331)
T ss_dssp HHHHHHHHHHHHHHHCHC---CCCTTTT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT
T ss_pred HHHhHHHHHHHHHHHHHh---hhccCCCCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhccccc
Confidence 33455877753 44432 22224689999999999984333333343 34455566656677777765
Q ss_pred -------ccchhhccccccCC-----CC---Cccceeeecccccc---CCCCcCHHHHHHHHhhcccCCcEEEEE--eCH
Q 006633 523 -------LIGTYQNWCEAMST-----YP---RTYDLIHADSIFSL---YKDRCEMEDVLLEMDRILRPEGSVIIR--DDV 582 (637)
Q Consensus 523 -------l~~~~~~wce~~~~-----yp---~t~Dl~H~~~lfs~---~~~~c~~~~~l~e~dRiLrPgG~~i~~--d~~ 582 (637)
+....+ .+..|.. |+ +.||+|=| -|++ ..+.-....+|--+-.-|||||+||.+ |..
T Consensus 114 ~~~~~~~f~a~f~-~~D~f~~~l~~~~~~~~~~FDvVSc--QFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 114 SKQYRFDFIAEFI-AADCFSESLREKLPPRSRKFDVVSC--QFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp -HTSEECCEEEEE-ESTTCCSHHHCTSSSTTS-EEEEEE--ES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred cccccccchhhee-ccccccchhhhhccccCCCcceeeh--HHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 111111 1112221 32 59999776 4443 234444567999999999999999998 444
Q ss_pred HHHHHHHH
Q 006633 583 DILVKIKS 590 (637)
Q Consensus 583 ~~~~~~~~ 590 (637)
.++.++++
T Consensus 191 ~i~~~l~~ 198 (331)
T PF03291_consen 191 EIVKRLRE 198 (331)
T ss_dssp HHHCCHHC
T ss_pred HHHHHHHh
Confidence 45455555
No 366
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=95.25 E-value=0.3 Score=49.60 Aligned_cols=94 Identities=15% Similarity=0.117 Sum_probs=59.9
Q ss_pred CCEEEEECCCCchHHHHHh--hc--CCEEEEcCccccHHHHHHHH-HHcCCC-eEEEEeccccCCCCCCCeeEEEecccc
Q 006633 219 IRTAIDTGCGVASWGAYLM--SR--NILAVSFAPRDTHEAQVQFA-LERGVP-ALIGVMASIRLPYPSRAFDMAHCSRCL 292 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La--~~--~v~~vdisp~Dls~a~i~~A-~erg~~-~~~~~~d~~~Lpfpd~sFDlV~~s~~L 292 (637)
..+++|||.|.|.=+.-|+ .. +++.+|-.. =..+.++.+ .+-+.+ +.+....++.+.-...-||+|.|-.+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~--Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLG--KKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCc--hHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc
Confidence 4599999999997666655 22 444444322 222333333 344554 777777776665221119999885543
Q ss_pred ccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 293 IPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 293 ~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
....++.-+...||+||.+++.
T Consensus 146 ------~L~~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 146 ------SLNVLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred ------chHHHHHHHHHhcccCCcchhh
Confidence 5666888899999999988653
No 367
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.13 E-value=0.092 Score=52.30 Aligned_cols=107 Identities=18% Similarity=0.201 Sum_probs=62.5
Q ss_pred HhcccCCCCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHH-------HHHHHHHHcC-CCe------EEEEecc
Q 006633 211 LINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHE-------AQVQFALERG-VPA------LIGVMAS 273 (637)
Q Consensus 211 lL~~~~g~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~-------a~i~~A~erg-~~~------~~~~~d~ 273 (637)
+..++++. +|+|+=.|.|.|++.++.. .-.+..+.|.+... .+...+++.. .+. .+.....
T Consensus 43 FaGlkpg~--tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~p 120 (238)
T COG4798 43 FAGLKPGA--TVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAP 120 (238)
T ss_pred EeccCCCC--EEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCC
Confidence 33456655 9999999999999998876 22566776655421 1111221111 011 1111111
Q ss_pred ccCC-CCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 274 IRLP-YPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 274 ~~Lp-fpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+.+. .+..++|+++...-+ | .. ...++..++++.|||||.+++..+
T Consensus 121 q~~d~~~~~~~yhdmh~k~i-~-~~-~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 121 QKLDLVPTAQNYHDMHNKNI-H-PA-TAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred Ccccccccchhhhhhhcccc-C-cc-hHHHHHHHHHHhcCCCcEEEEEec
Confidence 1111 234455555554433 4 22 678899999999999999999865
No 368
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.12 E-value=0.068 Score=53.26 Aligned_cols=97 Identities=19% Similarity=0.181 Sum_probs=61.5
Q ss_pred CCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecccccc
Q 006633 218 SIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIP 294 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h 294 (637)
.+++|||+|.|+|..+..-+.. .+...|+.|. ...+..-.+..+++.+.+...|... .+..||+|+.+.++..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~-~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPW-LEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFYN 154 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChH-HHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceecC
Confidence 3569999999999777666655 3566677542 2222222344566666666544333 6678999999988844
Q ss_pred CCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 295 WGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 295 ~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
-. ...+++. +.+.|+..|.-++.+
T Consensus 155 ~~--~a~~l~~-~~~~l~~~g~~vlvg 178 (218)
T COG3897 155 HT--EADRLIP-WKDRLAEAGAAVLVG 178 (218)
T ss_pred ch--HHHHHHH-HHHHHHhCCCEEEEe
Confidence 43 4666777 666666666655554
No 369
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=95.11 E-value=0.1 Score=56.36 Aligned_cols=106 Identities=17% Similarity=0.176 Sum_probs=56.3
Q ss_pred CCCCCEEEEECCCCchHHHHHhhc------------C--------CEEEEcCccccHHHHHHHHHH-----cCCCeEEE-
Q 006633 216 DGSIRTAIDTGCGVASWGAYLMSR------------N--------ILAVSFAPRDTHEAQVQFALE-----RGVPALIG- 269 (637)
Q Consensus 216 ~g~~r~VLDIGCGtG~~a~~La~~------------~--------v~~vdisp~Dls~a~i~~A~e-----rg~~~~~~- 269 (637)
....-+|+|+||..|..+..+.+. + +.--|+-.+|.+.-....... ...++...
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 344568999999999877665432 1 223466556666443322211 12233322
Q ss_pred -EeccccCCCCCCCeeEEEeccccccCCcC------C--------------------------------HHHHHHHHHhc
Q 006633 270 -VMASIRLPYPSRAFDMAHCSRCLIPWGQY------A--------------------------------DGLYLIEVDRV 310 (637)
Q Consensus 270 -~~d~~~Lpfpd~sFDlV~~s~~L~h~~~~------d--------------------------------~~~~L~ei~Rv 310 (637)
-++...--||+++.|+++++.++ ||... + ...+|+-=.+-
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~al-HWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~E 172 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYAL-HWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEE 172 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-T-TB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchhhhccCCCCceEEEEEechh-hhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 22344445899999999999999 77542 1 11233444566
Q ss_pred ccCCeEEEEEeC
Q 006633 311 LRPGGYWILSGP 322 (637)
Q Consensus 311 LKPGG~Lvls~p 322 (637)
|+|||.+++...
T Consensus 173 Lv~GG~mvl~~~ 184 (334)
T PF03492_consen 173 LVPGGRMVLTFL 184 (334)
T ss_dssp EEEEEEEEEEEE
T ss_pred eccCcEEEEEEe
Confidence 899999999865
No 370
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=95.09 E-value=0.056 Score=60.21 Aligned_cols=113 Identities=16% Similarity=0.186 Sum_probs=69.3
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHh----hcc--cchhh-ccccccCCCC---Cccceeeec
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGL--IGTYQ-NWCEAMSTYP---RTYDLIHAD 547 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgl--~~~~~-~wce~~~~yp---~t~Dl~H~~ 547 (637)
..+|||++||+|.|+..|++.. -.|+.+|.++.++..+.+ .|+ +-+++ |..+.+..++ .+||+|-.+
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 4689999999999999998752 245666776677766654 233 22333 3333233332 478887652
Q ss_pred cccccCCCCcC-HHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCceeE
Q 006633 548 SIFSLYKDRCE-MEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGR 600 (637)
Q Consensus 548 ~lfs~~~~~c~-~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~ 600 (637)
- .|-. .+.++-++.+ |+|++.++++-+...+.+-.+.+..-.|++.
T Consensus 370 P------Pr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~ 416 (431)
T TIGR00479 370 P------PRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGIT 416 (431)
T ss_pred c------CCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEE
Confidence 1 1222 3455555555 8999999999666666544444444456654
No 371
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=95.05 E-value=0.17 Score=52.72 Aligned_cols=100 Identities=16% Similarity=0.185 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHH---cCCCeEEEEeccccC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALE---RGVPALIGVMASIRL 276 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~e---rg~~~~~~~~d~~~L 276 (637)
...++.|.+.+....+. .|||||+|.|.++..|++.+ +++++.++ ...+.-.+ ...++.+...|+..+
T Consensus 16 ~~~~~~Iv~~~~~~~~~--~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~-----~~~~~L~~~~~~~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGD--TVLEIGPGPGALTRELLKRGKRVIAVEIDP-----DLAKHLKERFASNPNVEVINGDFLKW 88 (262)
T ss_dssp HHHHHHHHHHHTCGTTS--EEEEESSTTSCCHHHHHHHSSEEEEEESSH-----HHHHHHHHHCTTCSSEEEEES-TTTS
T ss_pred HHHHHHHHHhcCCCCCC--EEEEeCCCCccchhhHhcccCcceeecCcH-----hHHHHHHHHhhhcccceeeecchhcc
Confidence 55677888888766444 99999999999999999874 66666643 34444434 245688888898887
Q ss_pred CCCC---CCeeEEEeccccccCCcCCHHHHHHHHHhcccC
Q 006633 277 PYPS---RAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRP 313 (637)
Q Consensus 277 pfpd---~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKP 313 (637)
..+. +.-..|+++. ++. -...++..+...-+.
T Consensus 89 ~~~~~~~~~~~~vv~Nl---Py~--is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 89 DLYDLLKNQPLLVVGNL---PYN--ISSPILRKLLELYRF 123 (262)
T ss_dssp CGGGHCSSSEEEEEEEE---TGT--GHHHHHHHHHHHGGG
T ss_pred ccHHhhcCCceEEEEEe---ccc--chHHHHHHHhhcccc
Confidence 7654 4567777765 332 345567776664444
No 372
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=94.97 E-value=0.1 Score=55.27 Aligned_cols=100 Identities=14% Similarity=0.159 Sum_probs=61.1
Q ss_pred CCEEEEECCCCchHHHHHhhcCC-EEEEcCccccHHHHHHHHHHc----CC---CeEEEEecccc-CC-C-CCCCeeEEE
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNI-LAVSFAPRDTHEAQVQFALER----GV---PALIGVMASIR-LP-Y-PSRAFDMAH 287 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v-~~vdisp~Dls~a~i~~A~er----g~---~~~~~~~d~~~-Lp-f-pd~sFDlV~ 287 (637)
+++|||+=|=||.|+.+.+..|. .++.+ |.+...++.++++ +. ...+...|... +. . ..+.||+|+
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~V---D~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSV---DSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEE---ES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEE---eCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 45999999999999998887763 34444 5555555554433 32 35677777533 11 1 246899999
Q ss_pred ecc-ccc----cCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 288 CSR-CLI----PWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 288 ~s~-~L~----h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+-. .+. .... +...++..+.++|+|||.+++...
T Consensus 201 lDPPsF~k~~~~~~~-~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 201 LDPPSFAKSKFDLER-DYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp E--SSEESSTCEHHH-HHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred ECCCCCCCCHHHHHH-HHHHHHHHHHHhcCCCCEEEEEcC
Confidence 821 110 1111 455788899999999999988753
No 373
>PHA03412 putative methyltransferase; Provisional
Probab=94.97 E-value=0.038 Score=56.88 Aligned_cols=95 Identities=21% Similarity=0.174 Sum_probs=59.9
Q ss_pred eeEeeecccchhhhhhhcCC----CeEEEEeccCCCCcchhHHHHhhcccchhhccccccCCC--CCccceeeecccccc
Q 006633 479 RNLLDMNAYLGGFAAALVDD----PLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTY--PRTYDLIHADSIFSL 552 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~----~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~y--p~t~Dl~H~~~lfs~ 552 (637)
.+|||+|||+|.++.+++++ +. .+|..+|-.+.++..+.+. +.. .+-.+..+..+ +..||+|=+|==|-.
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~--~~V~aVEID~~Al~~Ar~n-~~~-~~~~~~D~~~~~~~~~FDlIIsNPPY~~ 126 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKP--REIVCVELNHTYYKLGKRI-VPE-ATWINADALTTEFDTLFDMAISNPPFGK 126 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCC--cEEEEEECCHHHHHHHHhh-ccC-CEEEEcchhcccccCCccEEEECCCCCC
Confidence 48999999999999988653 22 3666777766677776643 322 22223444444 368999887655542
Q ss_pred C-----CC---CcCHH-HHHHHHhhcccCCcEEEE
Q 006633 553 Y-----KD---RCEME-DVLLEMDRILRPEGSVII 578 (637)
Q Consensus 553 ~-----~~---~c~~~-~~l~e~dRiLrPgG~~i~ 578 (637)
. .. ...+. .++-..-|+||||+. |+
T Consensus 127 ~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 127 IKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred ccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 1 12 22334 466666788888887 55
No 374
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=94.94 E-value=0.16 Score=51.79 Aligned_cols=100 Identities=20% Similarity=0.260 Sum_probs=66.0
Q ss_pred cccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCC--C--CCCCe
Q 006633 213 NLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP--Y--PSRAF 283 (637)
Q Consensus 213 ~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lp--f--pd~sF 283 (637)
++.+|+ +||-+|..+|+....+++- -|.++.+++.. -...+..|.+|. ++.-...|+. .| | --..+
T Consensus 70 ~ik~gs--kVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~-~rdL~~la~~R~-NIiPIl~DAr-~P~~Y~~lv~~V 144 (229)
T PF01269_consen 70 PIKPGS--KVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRS-MRDLLNLAKKRP-NIIPILEDAR-HPEKYRMLVEMV 144 (229)
T ss_dssp S--TT---EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHH-HHHHHHHHHHST-TEEEEES-TT-SGGGGTTTS--E
T ss_pred CCCCCC--EEEEecccCCCccchhhhccCCCCcEEEEEecchh-HHHHHHHhccCC-ceeeeeccCC-ChHHhhcccccc
Confidence 344555 9999999999888887764 36789998743 345667787774 5544445543 33 1 12479
Q ss_pred eEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 284 DMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 284 DlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
|+|++--+ -++ +.+.++.++...||+||+++++.
T Consensus 145 DvI~~DVa---Qp~-Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 145 DVIFQDVA---QPD-QARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EEEEEE-S---STT-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEEecCC---ChH-HHHHHHHHHHhhccCCcEEEEEE
Confidence 99998432 222 56678888999999999999984
No 375
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=94.89 E-value=0.062 Score=54.48 Aligned_cols=127 Identities=13% Similarity=0.186 Sum_probs=70.0
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHH-----hhcccchhhccc-cccCCCCCccceeeeccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIY-----ERGLIGTYQNWC-EAMSTYPRTYDLIHADSI 549 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~-----eRgl~~~~~~wc-e~~~~yp~t~Dl~H~~~l 549 (637)
.....+||.|||.|=....|+-+-.=.+-+|... +..+..+. +.+-++.+..-. |.|.+=+..||+|=+-=+
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~--~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~ 131 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPV--EKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWC 131 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES---HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEeccC--HHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHh
Confidence 4688999999999999988765533222333322 35777777 333444443111 334333479999776333
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHH----------------HHHHHHHHHhcCCceeEEeccC
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVD----------------ILVKIKSITDGMEWEGRIADHE 605 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~----------------~~~~~~~~~~~~~W~~~~~~~e 605 (637)
.... ..-++..+|...-.-|+|+|.+|+.|+.. ....+++|.+.=...+...+..
T Consensus 132 lghL-TD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 132 LGHL-TDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp GGGS--HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred hccC-CHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence 2222 22355677888889999999999975431 2356666666666665544433
No 376
>PLN02366 spermidine synthase
Probab=94.87 E-value=0.046 Score=58.45 Aligned_cols=102 Identities=19% Similarity=0.217 Sum_probs=59.2
Q ss_pred CCceeEeeecccchhhhhhhcCCC-eEEEEeccCCCCcchhHHHHhh------cc----cchhh-ccccccCCCC-Cccc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDP-LWVMNTVPVEAKINTLGVIYER------GL----IGTYQ-NWCEAMSTYP-RTYD 542 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~eR------gl----~~~~~-~wce~~~~yp-~t~D 542 (637)
...++|||+|+|.|+.+.++++++ |.-+-++..|. ..+.++.+. |+ +-+++ |--+-....| +.||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~--~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDK--MVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCH--HHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCC
Confidence 447899999999999999998874 43333344433 455555442 11 11111 1000112343 7899
Q ss_pred eeeeccccccCCCC-cCHHHHHHHHhhcccCCcEEEEE
Q 006633 543 LIHADSIFSLYKDR-CEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 543 l~H~~~lfs~~~~~-c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
+|-++.-....... ---+.++-.+-|.|+|||.++..
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 98875422111110 01146788899999999999873
No 377
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=94.85 E-value=0.03 Score=56.04 Aligned_cols=128 Identities=16% Similarity=0.232 Sum_probs=72.7
Q ss_pred chhhHHHHHHHHHHHH-HhhhccCCCCCceeEeeecccch----hhhhhhcC----CCeEEEEeccCCCCcchhHHHHhh
Q 006633 451 FREDTALWKKRVTYYK-SVDYQLAQPGRYRNLLDMNAYLG----GFAAALVD----DPLWVMNTVPVEAKINTLGVIYER 521 (637)
Q Consensus 451 f~~d~~~w~~~v~~y~-~~~~~l~~~~~~r~vlD~~~g~g----gfaa~l~~----~~v~~mnv~~~~~~~~~l~~~~eR 521 (637)
|-.|...|..-.+... .++..... ++.=+|..+||++| +.|-.|.+ ..-|-+.+..+|-+...|+.| .+
T Consensus 5 FFRd~~~f~~l~~~vlp~~~~~~~~-~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~A-r~ 82 (196)
T PF01739_consen 5 FFRDPEQFEALRDEVLPPLLARARP-GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKA-RA 82 (196)
T ss_dssp TTTTTTHHHHHHHHHH-------CS--S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHH-HH
T ss_pred ccCCHHHHHHHHHHHHHhhccccCC-CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHH-Hh
Confidence 5556666665554333 22222233 46788999999999 55555555 123578899999987777664 45
Q ss_pred cccc------------------------------------hhhccccccCCCCCccceeeeccccccCCCCcCHHHHHHH
Q 006633 522 GLIG------------------------------------TYQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLE 565 (637)
Q Consensus 522 gl~~------------------------------------~~~~wce~~~~yp~t~Dl~H~~~lfs~~~~~c~~~~~l~e 565 (637)
|+++ ..||.++ ..+.+.-||+|=|-+|+-.+. .-....++--
T Consensus 83 G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~-~~~~~~vl~~ 160 (196)
T PF01739_consen 83 GIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFD-PETQQRVLRR 160 (196)
T ss_dssp TEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS--HHHHHHHHHH
T ss_pred CCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeC-HHHHHHHHHH
Confidence 5533 2233333 223348899999999987553 3345789999
Q ss_pred HhhcccCCcEEEEEeCH
Q 006633 566 MDRILRPEGSVIIRDDV 582 (637)
Q Consensus 566 ~dRiLrPgG~~i~~d~~ 582 (637)
+-+.|+|||++++....
T Consensus 161 l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 161 LHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp HGGGEEEEEEEEE-TT-
T ss_pred HHHHcCCCCEEEEecCc
Confidence 99999999999997544
No 378
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=94.83 E-value=0.06 Score=57.25 Aligned_cols=53 Identities=15% Similarity=0.262 Sum_probs=38.0
Q ss_pred HHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHHHHHc
Q 006633 205 IDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQFALER 262 (637)
Q Consensus 205 i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~A~er 262 (637)
++.+.+.+...++. .+||.+||.|..+..+++. +..++++ |.++.+++.|.++
T Consensus 8 l~Evl~~L~~~pg~--~vlD~TlG~GGhS~~il~~~~~~g~Vigi---D~D~~al~~ak~~ 63 (296)
T PRK00050 8 LDEVVDALAIKPDG--IYVDGTFGGGGHSRAILERLGPKGRLIAI---DRDPDAIAAAKDR 63 (296)
T ss_pred HHHHHHhhCCCCCC--EEEEeCcCChHHHHHHHHhCCCCCEEEEE---cCCHHHHHHHHHh
Confidence 44555565545443 8999999999999999987 2456666 6667777777655
No 379
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=94.76 E-value=0.068 Score=58.16 Aligned_cols=67 Identities=15% Similarity=0.225 Sum_probs=36.5
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccc
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASI 274 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~ 274 (637)
.++.+.++++..+ ..+||+-||+|.|+..|++. .|+++++.+..+..+.. .|..+++ ++.|..+++.
T Consensus 185 l~~~~~~~l~~~~---~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~-Na~~N~i~n~~f~~~~~~ 254 (352)
T PF05958_consen 185 LYEQALEWLDLSK---GDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARE-NAKLNGIDNVEFIRGDAE 254 (352)
T ss_dssp HHHHHHHHCTT-T---TEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHH-HHHHTT--SEEEEE--SH
T ss_pred HHHHHHHHhhcCC---CcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHH-HHHHcCCCcceEEEeecc
Confidence 3444444544332 27999999999999999997 45555554433332222 2233343 5777766544
No 380
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.75 E-value=0.093 Score=57.72 Aligned_cols=50 Identities=22% Similarity=0.310 Sum_probs=35.4
Q ss_pred ccCCCCCCCeeEEEeccccccCCcCC-------------------------------------HHHHHHHHHhcccCCeE
Q 006633 274 IRLPYPSRAFDMAHCSRCLIPWGQYA-------------------------------------DGLYLIEVDRVLRPGGY 316 (637)
Q Consensus 274 ~~Lpfpd~sFDlV~~s~~L~h~~~~d-------------------------------------~~~~L~ei~RvLKPGG~ 316 (637)
..--||+++.+++|++.++ ||...- ...+|+-=.+-|.|||.
T Consensus 154 Y~RLfP~~Slh~~~Ss~sl-HWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~ 232 (386)
T PLN02668 154 YRRLFPARSIDVFHSAFSL-HWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGA 232 (386)
T ss_pred cccccCCCceEEEEeeccc-eecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcE
Confidence 3334899999999999999 887521 11233334566899999
Q ss_pred EEEEeCCC
Q 006633 317 WILSGPPV 324 (637)
Q Consensus 317 Lvls~pp~ 324 (637)
++++....
T Consensus 233 mvl~~~Gr 240 (386)
T PLN02668 233 MFLVCLGR 240 (386)
T ss_pred EEEEEecC
Confidence 99996543
No 381
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=94.70 E-value=0.088 Score=57.83 Aligned_cols=95 Identities=9% Similarity=0.127 Sum_probs=63.7
Q ss_pred CEEEEECCCCchHHHHHhhc--C---CEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCC-CCCCCeeEEEecccc
Q 006633 220 RTAIDTGCGVASWGAYLMSR--N---ILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLP-YPSRAFDMAHCSRCL 292 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--~---v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lp-fpd~sFDlV~~s~~L 292 (637)
.+|||+.||+|..+..++.+ + |+++|+++....... +.+..++. ++.+...|+..+- .....||+|..-.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~-~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIK-NNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--
Confidence 48999999999999999886 3 566666553332222 22222333 3566666655442 1235799998753
Q ss_pred ccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 293 IPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 293 ~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+. .+..++..+.+.+++||.+.++.
T Consensus 123 --fG--s~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 --FG--TPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred --CC--CcHHHHHHHHHhcccCCEEEEEe
Confidence 33 45679999999999999999983
No 382
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=94.65 E-value=0.17 Score=52.97 Aligned_cols=103 Identities=17% Similarity=0.114 Sum_probs=53.8
Q ss_pred CCCEEEEECCCCc--hHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCCC--eEEEEeccccCC--CC----CCC
Q 006633 218 SIRTAIDTGCGVA--SWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVP--ALIGVMASIRLP--YP----SRA 282 (637)
Q Consensus 218 ~~r~VLDIGCGtG--~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~~--~~~~~~d~~~Lp--fp----d~s 282 (637)
.++..||||||.= .....++++ .|..+|.+|.-+..+.. -+..... ..+..+|..+.. +. .+-
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ra--lL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~ 145 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARA--LLADNPRGRTAYVQADLRDPEAILAHPEVRGL 145 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHH--HHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHh--hhcCCCCccEEEEeCCCCCHHHHhcCHHHHhc
Confidence 3678999999943 455666554 57777776633322221 1122334 667777754321 00 112
Q ss_pred ee-----EEEeccccccCCc-CCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 283 FD-----MAHCSRCLIPWGQ-YADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 283 FD-----lV~~s~~L~h~~~-~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+| .|+...+|+++.+ +++..++..+...|.||.+|+++..
T Consensus 146 lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 146 LDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp --TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred CCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 22 4555677766655 3888999999999999999999964
No 383
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=94.55 E-value=0.12 Score=55.21 Aligned_cols=129 Identities=13% Similarity=0.133 Sum_probs=77.7
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cccchhhccccccCC----CCCccceeeeccc
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGTYQNWCEAMST----YPRTYDLIHADSI 549 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~wce~~~~----yp~t~Dl~H~~~l 549 (637)
...|||+|||+|.|+..|+++. ..|+.+|.++.++..+.+. |+ .-.+-.+..... .+..||+|-.+
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~d-- 247 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVN-- 247 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEEC--
Confidence 3689999999999999999864 3678888887788776543 44 111111222211 22579998875
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHH-HHHHHHHhcCCceeE---EeccCCCCCCcceEEEEEe
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDVDIL-VKIKSITDGMEWEGR---IADHENGPRQREKILFANK 619 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~-~~~~~~~~~~~W~~~---~~~~e~~~~~~~~~l~~~K 619 (637)
..|..+...++++=.-++|++.++++-+...+ +.++.+ . .|++. .+|.-.....=|-|.+.+|
T Consensus 248 ----PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l-~--~y~~~~~~~~DmFP~T~HvE~v~~l~r 314 (315)
T PRK03522 248 ----PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL-P--GYRIERVQLFDMFPHTAHYEVLTLLVR 314 (315)
T ss_pred ----CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc-c--CcEEEEEEEeccCCCCCeEEEEEEEEc
Confidence 23444444444554447899999998555433 444444 2 46655 3454444434466666554
No 384
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=94.48 E-value=0.064 Score=52.92 Aligned_cols=113 Identities=13% Similarity=0.148 Sum_probs=67.1
Q ss_pred eEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHH----HHhhccc---chhh-ccccccCCCCCccceeeeccccc
Q 006633 480 NLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGV----IYERGLI---GTYQ-NWCEAMSTYPRTYDLIHADSIFS 551 (637)
Q Consensus 480 ~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~----~~eRgl~---~~~~-~wce~~~~yp~t~Dl~H~~~lfs 551 (637)
+|||.|||-|.+=..|++.+.-- -++.+|=++..+.. +-.+|+- .... |.-.. ...+.-||+||=-|-|.
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCcee
Confidence 99999999999999998876311 14555555444332 2334542 1111 22222 22467788888666654
Q ss_pred ---cC--CCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhc
Q 006633 552 ---LY--KDRCEMEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDG 594 (637)
Q Consensus 552 ---~~--~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~ 594 (637)
+. .....+..++--++++|+|||.|+|+.=.-..+++.+....
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~ 195 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFEN 195 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhc
Confidence 22 11122345677789999999999999755444444444333
No 385
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=94.18 E-value=0.11 Score=53.12 Aligned_cols=124 Identities=22% Similarity=0.254 Sum_probs=78.4
Q ss_pred CCceeEeeecccchhhhhhhcCCCe-EEEEeccCCCCcchhHHH----Hhhcc----cchhh-ccccccCCCC-Cccce-
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPL-WVMNTVPVEAKINTLGVI----YERGL----IGTYQ-NWCEAMSTYP-RTYDL- 543 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v-~~mnv~~~~~~~~~l~~~----~eRgl----~~~~~-~wce~~~~yp-~t~Dl- 543 (637)
.+.-+|||.-.|+|=+|..-++++- .|..| .+|. |-|+.+ +-|+| |-+++ |--|...+|+ .+||.
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~Vitv-Ekdp--~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI 209 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITV-EKDP--NVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI 209 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEE-eeCC--CeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceE
Confidence 5678999999999999988877754 22222 2221 222222 23444 33444 4447778898 78994
Q ss_pred eeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE--------eCHHHHHHHHHHHhcCCceeEEec
Q 006633 544 IHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR--------DDVDILVKIKSITDGMEWEGRIAD 603 (637)
Q Consensus 544 ~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~--------d~~~~~~~~~~~~~~~~W~~~~~~ 603 (637)
||=--=||.-. .=--+.+--|+-|||||||.+.=- --.+....|.+.+.+.-..+.-..
T Consensus 210 iHDPPRfS~Ag-eLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~ 276 (287)
T COG2521 210 IHDPPRFSLAG-ELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKV 276 (287)
T ss_pred eeCCCccchhh-hHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeee
Confidence 78655566433 111157888999999999998753 123466777777777777654443
No 386
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=94.06 E-value=0.035 Score=56.06 Aligned_cols=89 Identities=18% Similarity=0.259 Sum_probs=46.6
Q ss_pred CceeEeeecccchhhhhhhcCC--Ce-EEEEeccCCCCcchhHHHHhh----cc--cchhhccccccCCCC--Cccceee
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD--PL-WVMNTVPVEAKINTLGVIYER----GL--IGTYQNWCEAMSTYP--RTYDLIH 545 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~--~v-~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~~wce~~~~yp--~t~Dl~H 545 (637)
..-+|||+|||+|=++|.|... ++ -|.. ++..+.....+.++ |+ +.+.+ ......+| ..||.||
T Consensus 72 pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~---vE~~~~l~~~A~~~l~~~~~~nv~~~~--gdg~~g~~~~apfD~I~ 146 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQAALLAHLVGPVGRVVS---VERDPELAERARRNLARLGIDNVEVVV--GDGSEGWPEEAPFDRII 146 (209)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHHSTTEEEEE---EESBHHHHHHHHHHHHHHTTHSEEEEE--S-GGGTTGGG-SEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHhcCccceEEE---ECccHHHHHHHHHHHHHhccCceeEEE--cchhhccccCCCcCEEE
Confidence 3679999999999887777542 22 2232 23332333333222 33 22232 12344455 4699999
Q ss_pred eccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 546 ADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 546 ~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
+.+ ..+.+--++-+-|||||.+|+-
T Consensus 147 v~~---------a~~~ip~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 147 VTA---------AVPEIPEALLEQLKPGGRLVAP 171 (209)
T ss_dssp ESS---------BBSS--HHHHHTEEEEEEEEEE
T ss_pred Eee---------ccchHHHHHHHhcCCCcEEEEE
Confidence 832 2233334444559999999984
No 387
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=94.05 E-value=0.061 Score=51.92 Aligned_cols=95 Identities=8% Similarity=0.107 Sum_probs=56.8
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc----cchhhccccccCCC--C-Cccceeeecc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL----IGTYQNWCEAMSTY--P-RTYDLIHADS 548 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl----~~~~~~wce~~~~y--p-~t~Dl~H~~~ 548 (637)
....+|||+|||.|.++..|+++. -.|+.+|.++.+++.+.++-- +.+++ ..+..+ + ..||.|=++-
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~---~D~~~~~~~~~~~d~vi~n~ 85 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAADNLTVIH---GDALKFDLPKLQPYKVVGNL 85 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccCCCEEEEE---CchhcCCccccCCCEEEECC
Confidence 345689999999999999999873 356666777677777766521 22333 333333 3 3578765533
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
-|.. ..-.+..+ ++.. -+.++|.+++..
T Consensus 86 Py~~--~~~~i~~~-l~~~-~~~~~~~l~~q~ 113 (169)
T smart00650 86 PYNI--STPILFKL-LEEP-PAFRDAVLMVQK 113 (169)
T ss_pred Cccc--HHHHHHHH-HhcC-CCcceEEEEEEH
Confidence 3321 11222233 3322 256899998864
No 388
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=93.68 E-value=0.13 Score=56.21 Aligned_cols=120 Identities=17% Similarity=0.215 Sum_probs=67.7
Q ss_pred chhhHHHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhcc
Q 006633 451 FREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNW 530 (637)
Q Consensus 451 f~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~w 530 (637)
|.+....|.+ .++|..+...+.+ +. -++|++||+|+...+...-.. -++...+....++...-+--.-..+++-
T Consensus 88 ~~~~~~~~~~-~~~~~~l~~~~~~-~~--~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~~~~~~~l~~k 161 (364)
T KOG1269|consen 88 GNSNEMFWIR-HEGIVALRESCFP-GS--KVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANELAKKAYLDNK 161 (364)
T ss_pred hhHHHHHHHh-hcchHHHhhcCcc-cc--cccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHHHHHHHHhhhh
Confidence 4445555654 3445554444555 33 778999999999888764422 3334444442333332222221122222
Q ss_pred cc------ccCCCC-CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 531 CE------AMSTYP-RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 531 ce------~~~~yp-~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
|. ...+++ .+||.+-+. ....+.-+.+.++.|+-|+|+|||++|.-
T Consensus 162 ~~~~~~~~~~~~fedn~fd~v~~l---d~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 162 CNFVVADFGKMPFEDNTFDGVRFL---EVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred cceehhhhhcCCCCccccCcEEEE---eecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 21 122455 899975541 11123356679999999999999999985
No 389
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=93.21 E-value=0.1 Score=50.93 Aligned_cols=99 Identities=22% Similarity=0.333 Sum_probs=52.4
Q ss_pred CCceeEeeecccch--hhhhhhcCCCeEEEEeccCCCCc--chhHHHHhhcc------cc-hhhcccccc--CCC-CCcc
Q 006633 476 GRYRNLLDMNAYLG--GFAAALVDDPLWVMNTVPVEAKI--NTLGVIYERGL------IG-TYQNWCEAM--STY-PRTY 541 (637)
Q Consensus 476 ~~~r~vlD~~~g~g--gfaa~l~~~~v~~mnv~~~~~~~--~~l~~~~eRgl------~~-~~~~wce~~--~~y-p~t~ 541 (637)
.+.++||++|||+| |.+++... + ...|+-+|.++ ..+....++.. +- ...+|.+.. ... ++.|
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~-~--~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLF-G--AARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT--T---SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred cCCceEEEECCccchhHHHHHhcc-C--CceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 45789999999998 55555551 1 12233344432 23334444322 11 334898744 112 4789
Q ss_pred ceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 542 DLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 542 Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
|+|-+.-++=. .-..+.++-=+.++|.|+|.+++..
T Consensus 121 D~IlasDv~Y~---~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 121 DVILASDVLYD---EELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp SEEEEES--S----GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred CEEEEecccch---HHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 99998444321 1234677777899999999988863
No 390
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=92.98 E-value=0.26 Score=46.36 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=18.8
Q ss_pred CCCEEEEECCCCchHHHHHhh
Q 006633 218 SIRTAIDTGCGVASWGAYLMS 238 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~ 238 (637)
....|+|+|||.|.++..|+.
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~ 45 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAH 45 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHH
Confidence 355899999999999999988
No 391
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=92.98 E-value=0.76 Score=50.38 Aligned_cols=113 Identities=16% Similarity=0.124 Sum_probs=72.0
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC-------------------------------------------CEE
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN-------------------------------------------ILA 243 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~-------------------------------------------v~~ 243 (637)
.|..+....++ ..++|-=||+|++....+-.+ +.+
T Consensus 182 Ail~lagw~~~--~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G 259 (381)
T COG0116 182 AILLLAGWKPD--EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYG 259 (381)
T ss_pred HHHHHcCCCCC--CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEE
Confidence 34444444444 489999999999987765442 346
Q ss_pred EEcCccccHHHHHHHHHHcCCC--eEEEEeccccCCCCCCCeeEEEeccccc-cCCcC-CHH----HHHHHHHhcccCCe
Q 006633 244 VSFAPRDTHEAQVQFALERGVP--ALIGVMASIRLPYPSRAFDMAHCSRCLI-PWGQY-ADG----LYLIEVDRVLRPGG 315 (637)
Q Consensus 244 vdisp~Dls~a~i~~A~erg~~--~~~~~~d~~~Lpfpd~sFDlV~~s~~L~-h~~~~-d~~----~~L~ei~RvLKPGG 315 (637)
+|+++..+..+.. .|++.|+. +.|.++|...++-+-..+|+|+|+.-.- -+..+ ..+ .+...+.+.++--+
T Consensus 260 ~Did~r~i~~Ak~-NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws 338 (381)
T COG0116 260 SDIDPRHIEGAKA-NARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWS 338 (381)
T ss_pred ecCCHHHHHHHHH-HHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCc
Confidence 6776655443332 44555665 7899999988875447899999987320 11110 122 34456667888888
Q ss_pred EEEEEeC
Q 006633 316 YWILSGP 322 (637)
Q Consensus 316 ~Lvls~p 322 (637)
.++++++
T Consensus 339 ~~v~tt~ 345 (381)
T COG0116 339 RYVFTTS 345 (381)
T ss_pred eEEEEcc
Confidence 8888865
No 392
>PLN02476 O-methyltransferase
Probab=92.97 E-value=0.37 Score=50.89 Aligned_cols=131 Identities=12% Similarity=0.169 Sum_probs=73.6
Q ss_pred CceeEeeecccchhhhhhhcC----CC-eEEEEeccCCCCcchhHHHHhhcc---cchhh-ccccccCCC-----CCccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVD----DP-LWVMNTVPVEAKINTLGVIYERGL---IGTYQ-NWCEAMSTY-----PRTYD 542 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~----~~-v~~mnv~~~~~~~~~l~~~~eRgl---~~~~~-~wce~~~~y-----p~t~D 542 (637)
+.++||++|+++|..+.+|+. .+ |+++-.-|.... -..+.+-+-|+ |-+.+ +-.+.+..+ +.+||
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~-~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLE-VAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHH-HHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 478999999999999988865 22 333332221111 11222234455 11111 222222222 45899
Q ss_pred eeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe---------C---HHHHHHHHH----HHhcCCceeEEeccCC
Q 006633 543 LIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD---------D---VDILVKIKS----ITDGMEWEGRIADHEN 606 (637)
Q Consensus 543 l~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d---------~---~~~~~~~~~----~~~~~~W~~~~~~~e~ 606 (637)
+|=.++ +.-....++-..-+.|||||.+|+-+ . ......|++ +.+.=+++..+.-.
T Consensus 197 ~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPi-- 268 (278)
T PLN02476 197 FAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPI-- 268 (278)
T ss_pred EEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEe--
Confidence 987643 22345677777789999999998841 1 011123333 45556677776533
Q ss_pred CCCCcceEEEEEec
Q 006633 607 GPRQREKILFANKK 620 (637)
Q Consensus 607 ~~~~~~~~l~~~K~ 620 (637)
.+.+++++|+
T Consensus 269 ----gDGl~i~~K~ 278 (278)
T PLN02476 269 ----GDGMTICRKR 278 (278)
T ss_pred ----CCeeEEEEEC
Confidence 3678888874
No 393
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=92.97 E-value=0.2 Score=50.54 Aligned_cols=131 Identities=20% Similarity=0.287 Sum_probs=75.8
Q ss_pred CceeEeeecccchhhhhhhcC----C-CeEEEEeccCCCCcchhHHHHhhcc---cchhh-ccccccCCC-----CCccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVD----D-PLWVMNTVPVEAKINTLGVIYERGL---IGTYQ-NWCEAMSTY-----PRTYD 542 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~----~-~v~~mnv~~~~~~~~~l~~~~eRgl---~~~~~-~wce~~~~y-----p~t~D 542 (637)
+.++||.+|+++|=-+.+|++ . .|+++-.-|.... -..+.+..-|+ |-+.+ |..+.+... +.+||
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~-~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAE-IARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHH-HHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHH-HHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 478999999999977777753 2 3555555443222 22233344465 33332 344444433 35899
Q ss_pred eeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC----------------HHHHHHHHHHHhcCCceeEEeccCC
Q 006633 543 LIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD----------------VDILVKIKSITDGMEWEGRIADHEN 606 (637)
Q Consensus 543 l~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~----------------~~~~~~~~~~~~~~~W~~~~~~~e~ 606 (637)
+|=.++ +.-....++-..-+.|||||.+|+-+- ..+.+-.+.+.+.=+.+..+...
T Consensus 124 ~VFiDa------~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llpi-- 195 (205)
T PF01596_consen 124 FVFIDA------DKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLPI-- 195 (205)
T ss_dssp EEEEES------TGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEECS--
T ss_pred EEEEcc------cccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEEe--
Confidence 987654 233444566666799999999998521 11223334456666777777643
Q ss_pred CCCCcceEEEEEec
Q 006633 607 GPRQREKILFANKK 620 (637)
Q Consensus 607 ~~~~~~~~l~~~K~ 620 (637)
.+.|++++|+
T Consensus 196 ----gdGl~l~~K~ 205 (205)
T PF01596_consen 196 ----GDGLTLARKR 205 (205)
T ss_dssp ----TTEEEEEEE-
T ss_pred ----CCeeEEEEEC
Confidence 4678999885
No 394
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=92.80 E-value=0.17 Score=56.87 Aligned_cols=71 Identities=24% Similarity=0.349 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccc
Q 006633 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGV-PALIGVMASI 274 (637)
Q Consensus 201 ~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~ 274 (637)
++.+...+.+.+.+..++ .+||+-||||.++..+++. .|+++.++|.++..|.. .|..+|+ ++.|.++.++
T Consensus 368 aevLys~i~e~~~l~~~k--~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~-nA~~NgisNa~Fi~gqaE 441 (534)
T KOG2187|consen 368 AEVLYSTIGEWAGLPADK--TLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEK-NAQINGISNATFIVGQAE 441 (534)
T ss_pred HHHHHHHHHHHhCCCCCc--EEEEEeecCCceehhhhccccceeeeecChhhcchhhh-cchhcCccceeeeecchh
Confidence 344455566666665554 8999999999999999987 67888887766665544 3445554 5778776433
No 395
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=92.62 E-value=0.21 Score=52.80 Aligned_cols=112 Identities=18% Similarity=0.204 Sum_probs=64.5
Q ss_pred HHHHhcccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCCC-eEEEEeccccC-C-CC
Q 006633 208 IGKLINLKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVP-ALIGVMASIRL-P-YP 279 (637)
Q Consensus 208 L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~~-~~~~~~d~~~L-p-fp 279 (637)
....+...++ ..|||+.+|.|.=+..+++. .+.+.|+.+.-+. .......+-|.. +.....|.... + ..
T Consensus 77 ~~~~L~~~~~--~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~-~l~~~~~r~g~~~v~~~~~D~~~~~~~~~ 153 (283)
T PF01189_consen 77 VALALDPQPG--ERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLK-RLKENLKRLGVFNVIVINADARKLDPKKP 153 (283)
T ss_dssp HHHHHTTTTT--SEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHH-HHHHHHHHTT-SSEEEEESHHHHHHHHHH
T ss_pred cccccccccc--ccccccccCCCCceeeeeecccchhHHHHhccCHHHHH-HHHHHHHhcCCceEEEEeecccccccccc
Confidence 3444444444 48999999999888777765 2555666432111 111222233443 44444555444 1 23
Q ss_pred CCCeeEEEe----ccc--cccCC-------cC-------CHHHHHHHHHhcc----cCCeEEEEEeC
Q 006633 280 SRAFDMAHC----SRC--LIPWG-------QY-------ADGLYLIEVDRVL----RPGGYWILSGP 322 (637)
Q Consensus 280 d~sFDlV~~----s~~--L~h~~-------~~-------d~~~~L~ei~RvL----KPGG~Lvls~p 322 (637)
...||.|+. +.. +..-+ ++ -...+|..+.+.| ||||+++.++-
T Consensus 154 ~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 154 ESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp TTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred ccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 446999995 222 21111 10 2336899999999 99999999964
No 396
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=92.58 E-value=0.29 Score=49.85 Aligned_cols=135 Identities=19% Similarity=0.254 Sum_probs=80.3
Q ss_pred CceeEeeecccchhhhhhhcC----CC-eEEEEeccCCCCcchhHHHHhhcc---cchhh--ccccccCC-CCCccceee
Q 006633 477 RYRNLLDMNAYLGGFAAALVD----DP-LWVMNTVPVEAKINTLGVIYERGL---IGTYQ--NWCEAMST-YPRTYDLIH 545 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~----~~-v~~mnv~~~~~~~~~l~~~~eRgl---~~~~~--~wce~~~~-yp~t~Dl~H 545 (637)
..++||.+|.+.|=-|..|+. .. +.+.-+-|.-.. ...+...+-|+ |-.+. |+-+.++- ...+||+|-
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~-~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAE-IARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHH-HHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 489999999999866666643 22 333333332221 22333344455 22333 77777774 679999976
Q ss_pred eccccccCCCCcCHHHHHHHHhhcccCCcEEEEE--------------eCHHHHHHHHHHHhcCCceeEEeccCCCCCCc
Q 006633 546 ADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR--------------DDVDILVKIKSITDGMEWEGRIADHENGPRQR 611 (637)
Q Consensus 546 ~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~--------------d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~ 611 (637)
.+. +.-+-+..|-+.=+.|||||.+|+- +......+|++...-+.++-+.. +.--| ..
T Consensus 138 IDa------dK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-t~~lP-~g 209 (219)
T COG4122 138 IDA------DKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYD-TVLLP-LG 209 (219)
T ss_pred EeC------ChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCce-eEEEe-cC
Confidence 521 4455678888888999999999884 11234555666555555543221 11012 23
Q ss_pred ceEEEEEec
Q 006633 612 EKILFANKK 620 (637)
Q Consensus 612 ~~~l~~~K~ 620 (637)
+.++++.|.
T Consensus 210 DGl~v~~k~ 218 (219)
T COG4122 210 DGLLLSRKR 218 (219)
T ss_pred CceEEEeec
Confidence 789999885
No 397
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=92.58 E-value=0.3 Score=47.59 Aligned_cols=65 Identities=22% Similarity=0.239 Sum_probs=38.4
Q ss_pred EEEEECCCCchHHHHHhhcC--CEEEEcCccccHHHHHHHHHH----cCC--CeEEEEeccccCC--CCCCC-eeEEEec
Q 006633 221 TAIDTGCGVASWGAYLMSRN--ILAVSFAPRDTHEAQVQFALE----RGV--PALIGVMASIRLP--YPSRA-FDMAHCS 289 (637)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~--v~~vdisp~Dls~a~i~~A~e----rg~--~~~~~~~d~~~Lp--fpd~s-FDlV~~s 289 (637)
.|||+.||.|..+..+++.. |+++|+ ++..++.|+. -|+ ++.+..+|...+. +.... ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidi-----d~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDI-----DPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES------HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEEC-----CHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 79999999999999999985 555655 4445444443 343 4788888855432 22222 7999986
Q ss_pred c
Q 006633 290 R 290 (637)
Q Consensus 290 ~ 290 (637)
.
T Consensus 77 P 77 (163)
T PF09445_consen 77 P 77 (163)
T ss_dssp -
T ss_pred C
Confidence 6
No 398
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=92.57 E-value=0.13 Score=51.62 Aligned_cols=98 Identities=12% Similarity=0.103 Sum_probs=53.8
Q ss_pred eeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHh----hcc--cchhh-ccccccCCCCCccceeeeccccc
Q 006633 479 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE----RGL--IGTYQ-NWCEAMSTYPRTYDLIHADSIFS 551 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----Rgl--~~~~~-~wce~~~~yp~t~Dl~H~~~lfs 551 (637)
.+|||++||+|.++..++.+.. -.|+.++..+..+..+.+ -|+ +-+++ |+.+.+....+.||+|=+|-=|-
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~ 132 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFR 132 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCC
Confidence 4799999999999975444432 244555555445544432 122 22222 33222221225699887755442
Q ss_pred cCCCCcCHHHHHHHH--hhcccCCcEEEEEeCH
Q 006633 552 LYKDRCEMEDVLLEM--DRILRPEGSVIIRDDV 582 (637)
Q Consensus 552 ~~~~~c~~~~~l~e~--dRiLrPgG~~i~~d~~ 582 (637)
.. ..+.++--+ ..+|.|+|.+++.-..
T Consensus 133 ---~g-~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 133 ---KG-LLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred ---CC-hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 11 123333333 3568999999997543
No 399
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.46 E-value=0.083 Score=53.29 Aligned_cols=91 Identities=25% Similarity=0.317 Sum_probs=52.9
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc--cch--hhc-cccccCCCC--Cccceeeecc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL--IGT--YQN-WCEAMSTYP--RTYDLIHADS 548 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl--~~~--~~~-wce~~~~yp--~t~Dl~H~~~ 548 (637)
.....||++|||.|=-+|-|.+. +-.|.-++.- .+|.-...+-| .|. ++. ......-|| .-||.|+..+
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l---~~~V~siEr~-~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vta 146 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARL---VGRVVSIERI-EELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTA 146 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHHH---hCeEEEEEEc-HHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEee
Confidence 44689999999999555544433 1244444443 44444444433 121 222 224455577 6799988632
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
-+ -.++.-|+| -|+|||.+|+=
T Consensus 147 aa------~~vP~~Ll~---QL~~gGrlv~P 168 (209)
T COG2518 147 AA------PEVPEALLD---QLKPGGRLVIP 168 (209)
T ss_pred cc------CCCCHHHHH---hcccCCEEEEE
Confidence 22 234555655 69999999984
No 400
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=92.04 E-value=2.3 Score=44.00 Aligned_cols=139 Identities=15% Similarity=0.064 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCc-hHHHHHhhc--CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCC
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVA-SWGAYLMSR--NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPY 278 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG-~~a~~La~~--~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpf 278 (637)
+..+.++.-+.....-.+++||=+|=+-- +++..|... .++++|++.+-+. ...+.|.+.+.++.....|.. .|+
T Consensus 28 eT~~~Ra~~~~~~gdL~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~-fI~~~a~~~gl~i~~~~~DlR-~~L 105 (243)
T PF01861_consen 28 ETTLRRAALMAERGDLEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLD-FINRVAEEEGLPIEAVHYDLR-DPL 105 (243)
T ss_dssp HHHHHHHHHHHHTT-STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHH-HHHHHHHHHT--EEEE---TT-S--
T ss_pred HHHHHHHHHHHhcCcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHH-HHHHHHHHcCCceEEEEeccc-ccC
Confidence 44444554444444445679999996654 444444333 6888988654333 333467777888887777753 344
Q ss_pred C---CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCe-EEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHh
Q 006633 279 P---SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGG-YWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSL 354 (637)
Q Consensus 279 p---d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG-~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l 354 (637)
| .++||++++-. ++..+-...++.+....||.-| ..+++-. ..+.....|.++++....+
T Consensus 106 P~~~~~~fD~f~TDP---PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~-------------~~~~s~~~~~~~Q~~l~~~ 169 (243)
T PF01861_consen 106 PEELRGKFDVFFTDP---PYTPEGLKLFLSRGIEALKGEGCAGYFGFT-------------HKEASPDKWLEVQRFLLEM 169 (243)
T ss_dssp -TTTSS-BSEEEE------SSHHHHHHHHHHHHHTB-STT-EEEEEE--------------TTT--HHHHHHHHHHHHTS
T ss_pred CHHHhcCCCEEEeCC---CCCHHHHHHHHHHHHHHhCCCCceEEEEEe-------------cCcCcHHHHHHHHHHHHHC
Confidence 4 48899999987 5554456678999999998766 3333311 0111233455677777777
Q ss_pred ceee
Q 006633 355 CWKK 358 (637)
Q Consensus 355 ~w~~ 358 (637)
++-.
T Consensus 170 gl~i 173 (243)
T PF01861_consen 170 GLVI 173 (243)
T ss_dssp --EE
T ss_pred CcCH
Confidence 7633
No 401
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=91.76 E-value=0.28 Score=55.45 Aligned_cols=98 Identities=19% Similarity=0.248 Sum_probs=57.1
Q ss_pred CceeEeeecccchhhhhhhcC----CCeEEEEeccCCCCcch---hHHHHhh-ccc--chhh-cccccc-CCCCCcccee
Q 006633 477 RYRNLLDMNAYLGGFAAALVD----DPLWVMNTVPVEAKINT---LGVIYER-GLI--GTYQ-NWCEAM-STYPRTYDLI 544 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~----~~v~~mnv~~~~~~~~~---l~~~~eR-gl~--~~~~-~wce~~-~~yp~t~Dl~ 544 (637)
....||||.|+-||=..+|++ .+. |+..|.+..- |.-.++| |+- -+.+ |=. .+ ..+|..||.|
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~----lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~-~~~~~~~~~fD~I 187 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGA----IVANEYSASRVKVLHANISRCGVSNVALTHFDGR-VFGAALPETFDAI 187 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCE----EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchh-hhhhhchhhcCeE
Confidence 356899999999997777654 343 3333443333 3444455 441 1221 111 12 2457889998
Q ss_pred e----eccccccCCCC-----c---CH-------HHHHHHHhhcccCCcEEEEE
Q 006633 545 H----ADSIFSLYKDR-----C---EM-------EDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 545 H----~~~lfs~~~~~-----c---~~-------~~~l~e~dRiLrPgG~~i~~ 579 (637)
- |+|.=..-++- - ++ ..||-..-+.|||||.+|.+
T Consensus 188 LvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYS 241 (470)
T PRK11933 188 LLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS 241 (470)
T ss_pred EEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 8 55442222110 0 11 27888889999999999987
No 402
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=91.58 E-value=0.26 Score=49.51 Aligned_cols=99 Identities=18% Similarity=0.203 Sum_probs=51.2
Q ss_pred EEEEECCCCchHHHHHhhc----CCEEEEcCc--cccHHHHHHHHHHcC-----CCeEEEEeccccCCCCCCCeeEEEec
Q 006633 221 TAIDTGCGVASWGAYLMSR----NILAVSFAP--RDTHEAQVQFALERG-----VPALIGVMASIRLPYPSRAFDMAHCS 289 (637)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~----~v~~vdisp--~Dls~a~i~~A~erg-----~~~~~~~~d~~~Lpfpd~sFDlV~~s 289 (637)
.+.|||||.|.+...|+.. -+.++.|-- .|.-++.++..+... .++.+.. ...+-|-.+-|..-..+
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr--~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLR--TNAMKFLPNFFEKGQLS 140 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeee--ccchhhccchhhhcccc
Confidence 6899999999999999887 244444411 133344444433221 1111111 11121222222222222
Q ss_pred cccccCCcC-----------CHHHHHHHHHhcccCCeEEEEEe
Q 006633 290 RCLIPWGQY-----------ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 290 ~~L~h~~~~-----------d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
-.+..+++. --..++.+..-+|++||.++..+
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 222112210 12257899999999999999874
No 403
>PLN02672 methionine S-methyltransferase
Probab=91.41 E-value=0.33 Score=59.86 Aligned_cols=119 Identities=9% Similarity=0.050 Sum_probs=71.2
Q ss_pred eeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHh---h----------------cc---cchhh-cccccc
Q 006633 479 RNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYE---R----------------GL---IGTYQ-NWCEAM 534 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~e---R----------------gl---~~~~~-~wce~~ 534 (637)
..|||+|||+|-.+-+|+++ +- -.|+.+|-++..+.++.+ + ++ +-+++ ||.+.+
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~--~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLP--SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 47999999999999998764 32 145666777677766622 1 11 23333 666544
Q ss_pred CCCCCccceeeecc--------------------------------ccccC--CCCc-CHHHHHHHHhhcccCCcEEEEE
Q 006633 535 STYPRTYDLIHADS--------------------------------IFSLY--KDRC-EMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 535 ~~yp~t~Dl~H~~~--------------------------------lfs~~--~~~c-~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
......||+|-++= ||..+ .+.- .+..|+-+.-++|+|||++++-
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 21112578754421 11110 1111 1247888899999999999997
Q ss_pred eCHHHHHHHH-HHHhcCCcee
Q 006633 580 DDVDILVKIK-SITDGMEWEG 599 (637)
Q Consensus 580 d~~~~~~~~~-~~~~~~~W~~ 599 (637)
-..+.-+.|. +++++..|+.
T Consensus 278 iG~~q~~~v~~~l~~~~gf~~ 298 (1082)
T PLN02672 278 MGGRPGQAVCERLFERRGFRI 298 (1082)
T ss_pred ECccHHHHHHHHHHHHCCCCe
Confidence 5555555666 4666555544
No 404
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=91.36 E-value=0.9 Score=49.22 Aligned_cols=93 Identities=18% Similarity=0.165 Sum_probs=62.7
Q ss_pred CCEEEEECCC-CchHHHHHhh-cCCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCC
Q 006633 219 IRTAIDTGCG-VASWGAYLMS-RNILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (637)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~-~~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~ 296 (637)
+.+|+=+|+| .|..+..+++ .+..++.+ +.++...+.|++-|....+...+.....--.+.||+|+..-
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~---~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv------ 237 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAI---TRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV------ 237 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEE---eCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC------
Confidence 3488888887 4477788887 46666666 66777888888877654443222222221122399999754
Q ss_pred cCCHHHHHHHHHhcccCCeEEEEEeCC
Q 006633 297 QYADGLYLIEVDRVLRPGGYWILSGPP 323 (637)
Q Consensus 297 ~~d~~~~L~ei~RvLKPGG~Lvls~pp 323 (637)
- ...+....+.||+||.+++.+-+
T Consensus 238 --~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 --G-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred --C-hhhHHHHHHHHhcCCEEEEECCC
Confidence 2 44678889999999999999754
No 405
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=91.26 E-value=0.5 Score=48.08 Aligned_cols=123 Identities=14% Similarity=0.148 Sum_probs=77.8
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHH-hhcccc------h--------hhccccccCCCC--
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIY-ERGLIG------T--------YQNWCEAMSTYP-- 538 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~-eRgl~~------~--------~~~wce~~~~yp-- 538 (637)
..-..||+-|||.|--+.+|++++. +|+.+|.++.-++-++ ++++-. . +.-+|..|-.++
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCeEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 3456899999999999999999985 6777787766666664 455411 1 112455555553
Q ss_pred --CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEE-E-e--------CH--HHHHHHHHHHhcCCceeEEec
Q 006633 539 --RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVII-R-D--------DV--DILVKIKSITDGMEWEGRIAD 603 (637)
Q Consensus 539 --~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~-~-d--------~~--~~~~~~~~~~~~~~W~~~~~~ 603 (637)
..||+|-=-+.|-... .-..+.+..-|.++|+|||.+++ + + +. -....|+++.. -.|++....
T Consensus 113 ~~g~fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp CHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEE
T ss_pred hcCCceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEe
Confidence 3588876444443332 23456999999999999999433 3 1 00 03366777776 777776443
No 406
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=91.16 E-value=1.3 Score=48.03 Aligned_cols=104 Identities=16% Similarity=0.191 Sum_probs=54.1
Q ss_pred CCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCCC-eEEEE--eccccCCCC-CCCeeEEEe
Q 006633 218 SIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVP-ALIGV--MASIRLPYP-SRAFDMAHC 288 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~~-~~~~~--~d~~~Lpfp-d~sFDlV~~ 288 (637)
+..+|||+|.|.|.-+..+-.- .+..++.+| .+.+.--..+..-... ..+.. ....+++++ ...|++|+.
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp-~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~ 191 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASP-ALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIV 191 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCH-HHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhh
Confidence 3557999999998754443322 233333322 1111111122111110 01111 112345544 456777776
Q ss_pred ccccccCCcC-CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 289 SRCLIPWGQY-ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 289 s~~L~h~~~~-d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
..-|.|-..+ .....++.+..++.|||.|++..+
T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred hhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 6555444432 233478889999999999999976
No 407
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=91.12 E-value=0.54 Score=48.17 Aligned_cols=97 Identities=5% Similarity=0.009 Sum_probs=62.5
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHh-hccc--------------chhhccccccCCCC----
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYE-RGLI--------------GTYQNWCEAMSTYP---- 538 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e-Rgl~--------------~~~~~wce~~~~yp---- 538 (637)
...||+.|||-|==+.+|++++. .|+.+|-++.-+...++ .|+- +.+.-+|..|-..+
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 46899999999999999999876 45666666555555444 2221 11223444444443
Q ss_pred --CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEE
Q 006633 539 --RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVII 578 (637)
Q Consensus 539 --~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 578 (637)
..||+|---+.|-... .-....+..-|-++|||||.+++
T Consensus 121 ~~~~fD~VyDra~~~Alp-p~~R~~Y~~~l~~lL~pgg~lll 161 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALP-NDLRTNYAKMMLEVCSNNTQILL 161 (226)
T ss_pred ccCCcCeeeeehhHhcCC-HHHHHHHHHHHHHHhCCCcEEEE
Confidence 3678755444444332 12345899999999999998877
No 408
>PLN02823 spermine synthase
Probab=91.03 E-value=1.4 Score=47.84 Aligned_cols=99 Identities=11% Similarity=0.167 Sum_probs=57.8
Q ss_pred CCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHhhcccchhh-------------ccccccCCCCCcc
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYERGLIGTYQ-------------NWCEAMSTYPRTY 541 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~-------------~wce~~~~yp~t~ 541 (637)
...++||-+|+|.|+.+..+.+. ++- .|+-++..+..++++.+. ++..+ |=-+-+..-++.|
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~--~v~~VEiD~~vv~lar~~--~~~~~~~~~dprv~v~~~Da~~~L~~~~~~y 177 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVE--KVVMCDIDQEVVDFCRKH--LTVNREAFCDKRLELIINDARAELEKRDEKF 177 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCC--eEEEEECCHHHHHHHHHh--cccccccccCCceEEEEChhHHHHhhCCCCc
Confidence 35789999999999999988775 453 344444444577766554 12111 0001111124689
Q ss_pred ceeeeccccccCC-CCcC--H-HHHHH-HHhhcccCCcEEEEE
Q 006633 542 DLIHADSIFSLYK-DRCE--M-EDVLL-EMDRILRPEGSVIIR 579 (637)
Q Consensus 542 Dl~H~~~lfs~~~-~~c~--~-~~~l~-e~dRiLrPgG~~i~~ 579 (637)
|+|=++ ++.-.. ..|. . ...+- .+.|.|+|||.+++.
T Consensus 178 DvIi~D-~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 178 DVIIGD-LADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cEEEec-CCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 998886 332111 1121 1 23444 688999999999874
No 409
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=90.90 E-value=0.12 Score=47.00 Aligned_cols=47 Identities=30% Similarity=0.547 Sum_probs=31.1
Q ss_pred CeeEEEecccc--ccC--CcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccc
Q 006633 282 AFDMAHCSRCL--IPW--GQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHW 330 (637)
Q Consensus 282 sFDlV~~s~~L--~h~--~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~ 330 (637)
.||+|+|-.+. +|+ .++-...+++.+.+.|+|||.|++. |..|....
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE--pQ~w~sY~ 51 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE--PQPWKSYK 51 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-----HHHHH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe--CCCcHHHH
Confidence 48999996654 333 2223457999999999999999998 34455443
No 410
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=90.64 E-value=0.69 Score=48.97 Aligned_cols=131 Identities=22% Similarity=0.274 Sum_probs=83.9
Q ss_pred cCCCCCceeEeeecccchhhhh-hhcCCCeEEEEeccCCCC----cchhHHHHhhcccchhh-ccccccCC--CC---Cc
Q 006633 472 LAQPGRYRNLLDMNAYLGGFAA-ALVDDPLWVMNTVPVEAK----INTLGVIYERGLIGTYQ-NWCEAMST--YP---RT 540 (637)
Q Consensus 472 l~~~~~~r~vlD~~~g~ggfaa-~l~~~~v~~mnv~~~~~~----~~~l~~~~eRgl~~~~~-~wce~~~~--yp---~t 540 (637)
|...++--.||||-||.|-.-- +|.+.+--..+|.=.|-+ +.--..|.+|||-++.. .-..+|.. |- -.
T Consensus 130 L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~ 209 (311)
T PF12147_consen 130 LREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPA 209 (311)
T ss_pred HHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCC
Confidence 4333677889999999874311 112222111122222222 13456899999955422 11123332 42 45
Q ss_pred cceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH--HHHHHHHHHHhc----CCceeEEe
Q 006633 541 YDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV--DILVKIKSITDG----MEWEGRIA 602 (637)
Q Consensus 541 ~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~--~~~~~~~~~~~~----~~W~~~~~ 602 (637)
++|+-.+|||.++.+.-.+..-|-=+-++|.|||++|.+-.. -.++.|...+.+ --|-.+..
T Consensus 210 P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrR 277 (311)
T PF12147_consen 210 PTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRR 277 (311)
T ss_pred CCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEec
Confidence 789999999999998877778888999999999999999743 366777777755 35877643
No 411
>PRK00536 speE spermidine synthase; Provisional
Probab=90.63 E-value=1.4 Score=46.08 Aligned_cols=94 Identities=15% Similarity=0.157 Sum_probs=61.7
Q ss_pred cCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhc----cc-----cccCCCCCccc
Q 006633 472 LAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQN----WC-----EAMSTYPRTYD 542 (637)
Q Consensus 472 l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~----wc-----e~~~~yp~t~D 542 (637)
+.. +..++||=+|.|-||-+.-+.+++- +|+-++-.+..+.+..+ ..+..|. -- .-.....++||
T Consensus 68 ~~h-~~pk~VLIiGGGDGg~~REvLkh~~---~v~mVeID~~Vv~~~k~--~lP~~~~~~~DpRv~l~~~~~~~~~~~fD 141 (262)
T PRK00536 68 CTK-KELKEVLIVDGFDLELAHQLFKYDT---HVDFVQADEKILDSFIS--FFPHFHEVKNNKNFTHAKQLLDLDIKKYD 141 (262)
T ss_pred hhC-CCCCeEEEEcCCchHHHHHHHCcCC---eeEEEECCHHHHHHHHH--HCHHHHHhhcCCCEEEeehhhhccCCcCC
Confidence 344 6789999999999999999999873 44444443334444333 1111210 00 00111247899
Q ss_pred eeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 543 LIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 543 l~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
+|=.+.+|+ +...-.+.|+|+|||.++..
T Consensus 142 VIIvDs~~~--------~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 142 LIICLQEPD--------IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred EEEEcCCCC--------hHHHHHHHHhcCCCcEEEEC
Confidence 999988776 45556789999999999996
No 412
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=90.46 E-value=0.26 Score=48.94 Aligned_cols=92 Identities=17% Similarity=0.105 Sum_probs=62.8
Q ss_pred EEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHc-----CCCeEEEEeccccCCCCCCCeeEEEeccccc
Q 006633 221 TAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER-----GVPALIGVMASIRLPYPSRAFDMAHCSRCLI 293 (637)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~er-----g~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~ 293 (637)
.+.|+|+|+|.++...++. .|.++..+| ...+.|.++ ..+..+..+|+....| ...|+|+|-..=.
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~A~rViAiE~dP-----k~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDT 107 (252)
T COG4076 35 TFADLGAGSGILSVVAAHAAERVIAIEKDP-----KRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDT 107 (252)
T ss_pred ceeeccCCcchHHHHHHhhhceEEEEecCc-----HHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhH
Confidence 7999999999887766665 677776644 233455554 2357788888888777 3479999943222
Q ss_pred cCCcCCHHHHHHHHHhcccCCeEEEE
Q 006633 294 PWGQYADGLYLIEVDRVLRPGGYWIL 319 (637)
Q Consensus 294 h~~~~d~~~~L~ei~RvLKPGG~Lvl 319 (637)
-+..+.....+..+...||-.+.++=
T Consensus 108 aLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 108 ALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HhhcccccHHHHHHHHHhhcCCcccc
Confidence 23332455678888888998888764
No 413
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=90.12 E-value=0.13 Score=45.34 Aligned_cols=93 Identities=17% Similarity=0.104 Sum_probs=37.8
Q ss_pred EEECCCCchHHHHHhhc-------CCEEEEcCccccHHHHHHHHHHcC--CCeEEEEeccccC--CCCCCCeeEEEeccc
Q 006633 223 IDTGCGVASWGAYLMSR-------NILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRL--PYPSRAFDMAHCSRC 291 (637)
Q Consensus 223 LDIGCGtG~~a~~La~~-------~v~~vdisp~Dls~a~i~~A~erg--~~~~~~~~d~~~L--pfpd~sFDlV~~s~~ 291 (637)
||||+..|..+..+++. .+.++|..+. .+...+..++.+ ..+.+...+.... .+++++||+|+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~--~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG--DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc--ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 68999999888777763 2455665432 111222222222 2466776665432 133678999997542
Q ss_pred cccCCcCCHHHHHHHHHhcccCCeEEEEE
Q 006633 292 LIPWGQYADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 292 L~h~~~~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
|-.+ .....++.+.+.|+|||.+++.
T Consensus 79 --H~~~-~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 79 --HSYE-AVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ----HH-HHHHHHHHHGGGEEEEEEEEEE
T ss_pred --CCHH-HHHHHHHHHHHHcCCCeEEEEe
Confidence 3232 5667889999999999999885
No 414
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=90.03 E-value=0.64 Score=49.76 Aligned_cols=61 Identities=15% Similarity=0.285 Sum_probs=38.0
Q ss_pred Cccceeeeccccc-cCCCCcCHHHHHHHHhhcccCCcEEEEE--eCHHHHHHHHHHHhcCCceeE
Q 006633 539 RTYDLIHADSIFS-LYKDRCEMEDVLLEMDRILRPEGSVIIR--DDVDILVKIKSITDGMEWEGR 600 (637)
Q Consensus 539 ~t~Dl~H~~~lfs-~~~~~c~~~~~l~e~dRiLrPgG~~i~~--d~~~~~~~~~~~~~~~~W~~~ 600 (637)
..||++-|--.|- .+.+--.....|.-+-+-|||||+||=+ |...++.+++.. ...+|.-.
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~-e~~~~gNd 258 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG-EVERFGND 258 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc-cchhhcce
Confidence 3499987633322 1122223346778889999999999998 444566777765 33455433
No 415
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=89.63 E-value=2 Score=44.60 Aligned_cols=105 Identities=17% Similarity=0.158 Sum_probs=68.8
Q ss_pred ceeEeeecccchhhhhhhc----CC-CeEEEEeccCCCCcchhHHHHh----hcccc-hh---hccccccCCCCCcccee
Q 006633 478 YRNLLDMNAYLGGFAAALV----DD-PLWVMNTVPVEAKINTLGVIYE----RGLIG-TY---QNWCEAMSTYPRTYDLI 544 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~----~~-~v~~mnv~~~~~~~~~l~~~~e----Rgl~~-~~---~~wce~~~~yp~t~Dl~ 544 (637)
...|||.|.|.|.+.++|+ .. .|++.-. .+..++++.+ -||.- +- .|-++.. .+..||.|
T Consensus 95 g~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~-----r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~--~~~~vDav 167 (256)
T COG2519 95 GSRVLEAGTGSGALTAYLARAVGPEGHVTTYEI-----REDFAKTARENLSEFGLGDRVTLKLGDVREGI--DEEDVDAV 167 (256)
T ss_pred CCEEEEcccCchHHHHHHHHhhCCCceEEEEEe-----cHHHHHHHHHHHHHhccccceEEEeccccccc--cccccCEE
Confidence 7789999999999999998 33 3444433 3344444432 25533 11 1334322 23478877
Q ss_pred eeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHhcCCc
Q 006633 545 HADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR-DDVDILVKIKSITDGMEW 597 (637)
Q Consensus 545 H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~~~~W 597 (637)
-. +--+-..+|--++.+|+|||.+++- -..+++.++-+.++..+|
T Consensus 168 ~L--------Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 168 FL--------DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred EE--------cCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 76 4444568999999999999999885 456666666666666665
No 416
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=89.53 E-value=0.39 Score=51.80 Aligned_cols=94 Identities=16% Similarity=0.222 Sum_probs=55.9
Q ss_pred CceeEeeecccchhhhhhhc---CCCeEEEEeccCCCCcchhHHHHhhcc---cchhhccccccCCCC-Cccceeeeccc
Q 006633 477 RYRNLLDMNAYLGGFAAALV---DDPLWVMNTVPVEAKINTLGVIYERGL---IGTYQNWCEAMSTYP-RTYDLIHADSI 549 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~---~~~v~~mnv~~~~~~~~~l~~~~eRgl---~~~~~~wce~~~~yp-~t~Dl~H~~~l 549 (637)
+.++|||+|||+|-....=+ .+.| +-|-..+...-..++|.+-|+ |.+++.--|.. --| .-.|+|-+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V--~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi-~LP~eKVDiIvS--- 133 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKV--YAVEASSIADFARKIVKDNGLEDVITVIKGKVEDI-ELPVEKVDIIVS--- 133 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceE--EEEechHHHHHHHHHHHhcCccceEEEeecceEEE-ecCccceeEEee---
Confidence 37899999999997543333 3334 223222222234556667776 44444333444 345 77787664
Q ss_pred cccCCCCcC-----HHHHHHHHhhcccCCcEEEE
Q 006633 550 FSLYKDRCE-----MEDVLLEMDRILRPEGSVII 578 (637)
Q Consensus 550 fs~~~~~c~-----~~~~l~e~dRiLrPgG~~i~ 578 (637)
-|..-|. +..+|.-=||.|.|||.++=
T Consensus 134 --EWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 134 --EWMGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred --hhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 3333333 34677778999999998763
No 417
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=89.10 E-value=2.5 Score=44.52 Aligned_cols=158 Identities=16% Similarity=0.230 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHHHHh-------hccc
Q 006633 453 EDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGVIYE-------RGLI 524 (637)
Q Consensus 453 ~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~e-------Rgl~ 524 (637)
-.|+.|.+.|-.=.+ .... .+.-.++|+|||.|.-+-.|... += --|..+|-++..+..+-| .|-|
T Consensus 128 pETEE~V~~Vid~~~---~~~~-~~~~~ildlgtGSGaIslsll~~L~~--~~v~AiD~S~~Ai~La~eN~qr~~l~g~i 201 (328)
T KOG2904|consen 128 PETEEWVEAVIDALN---NSEH-SKHTHILDLGTGSGAISLSLLHGLPQ--CTVTAIDVSKAAIKLAKENAQRLKLSGRI 201 (328)
T ss_pred ccHHHHHHHHHHHHh---hhhh-cccceEEEecCCccHHHHHHHhcCCC--ceEEEEeccHHHHHHHHHHHHHHhhcCce
Confidence 457889888763221 1122 22338999999999888887653 21 123344444444444433 3557
Q ss_pred chhhc-cc-cccCCCC---Cccceeeecc--ccc-----------cCCC--------CcCH--HHHHHHHhhcccCCcEE
Q 006633 525 GTYQN-WC-EAMSTYP---RTYDLIHADS--IFS-----------LYKD--------RCEM--EDVLLEMDRILRPEGSV 576 (637)
Q Consensus 525 ~~~~~-wc-e~~~~yp---~t~Dl~H~~~--lfs-----------~~~~--------~c~~--~~~l~e~dRiLrPgG~~ 576 (637)
++.|. .- +.+.++| ..+|+|-+|- +++ .|.. .|.. ..++.=.-|.|+|||++
T Consensus 202 ~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~ 281 (328)
T KOG2904|consen 202 EVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFE 281 (328)
T ss_pred EEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeE
Confidence 77763 22 5777787 8888876642 222 1111 1111 13445557999999999
Q ss_pred EEEeC-----HHHHHHHHH-HHhcCCceeEEeccCCCCCCcceEEEEEe
Q 006633 577 IIRDD-----VDILVKIKS-ITDGMEWEGRIADHENGPRQREKILFANK 619 (637)
Q Consensus 577 i~~d~-----~~~~~~~~~-~~~~~~W~~~~~~~e~~~~~~~~~l~~~K 619 (637)
++.-. ...+..+.. ..+.--|.+.++..- -+.+++++-.+
T Consensus 282 ~le~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~Df---~~~~Rfv~i~r 327 (328)
T KOG2904|consen 282 QLELVERKEHSYLVRIWMISLKDDSNGKAAVVSDF---AGRPRFVIIHR 327 (328)
T ss_pred EEEecccccCcHHHHHHHHhchhhccchhheeecc---cCCcceEEEEe
Confidence 99632 223344333 244444555553211 23556665443
No 418
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=88.95 E-value=2.8 Score=46.05 Aligned_cols=125 Identities=11% Similarity=0.160 Sum_probs=70.4
Q ss_pred eeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc--cchhh-ccccccCC-CCCccceeeecccc
Q 006633 479 RNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ-NWCEAMST-YPRTYDLIHADSIF 550 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~-~wce~~~~-yp~t~Dl~H~~~lf 550 (637)
++|||++||+|.|+..|+.+. ..|+.+|..+..+..+.+. |+ +-.+. |. +.+.. .-..||+|-+|=
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~-~~~~~~~~~~~D~vi~DP-- 308 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDS-AKFATAQMSAPELVLVNP-- 308 (374)
T ss_pred CEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH-HHHHHhcCCCCCEEEECC--
Confidence 589999999999999998764 3566777766677666543 22 11111 11 11111 113488877642
Q ss_pred ccCCCCcCH-HHHHHHHhhcccCCcEEEEEeCHH-HHHHHHHHHhcCCceeE---EeccCCCCCCcceEEEE
Q 006633 551 SLYKDRCEM-EDVLLEMDRILRPEGSVIIRDDVD-ILVKIKSITDGMEWEGR---IADHENGPRQREKILFA 617 (637)
Q Consensus 551 s~~~~~c~~-~~~l~e~dRiLrPgG~~i~~d~~~-~~~~~~~~~~~~~W~~~---~~~~e~~~~~~~~~l~~ 617 (637)
.|..+ +.++-.+. -|+|++.++++-+.. ..+-++.+ . .|++. .+|-=.....=|-|.+.
T Consensus 309 ----Pr~G~~~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L-~--gy~l~~~~~~DmFPqT~HvE~v~ll 372 (374)
T TIGR02085 309 ----PRRGIGKELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL-S--GYQIERVQLFDMFPHTSHYEVLTLL 372 (374)
T ss_pred ----CCCCCcHHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh-c--CceEEEEEEeccCCCCCcEEEEEEE
Confidence 23222 33333333 479999999996655 44555555 2 47665 33433333333544443
No 419
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=88.60 E-value=0.65 Score=46.80 Aligned_cols=134 Identities=17% Similarity=0.253 Sum_probs=82.3
Q ss_pred eEeeecccchhhhhhhcCC-CeEEEEeccCCCCcchhHH----HHhhcccc----hhhccccc-------cCCCCCccce
Q 006633 480 NLLDMNAYLGGFAAALVDD-PLWVMNTVPVEAKINTLGV----IYERGLIG----TYQNWCEA-------MSTYPRTYDL 543 (637)
Q Consensus 480 ~vlD~~~g~ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~----~~eRgl~~----~~~~wce~-------~~~yp~t~Dl 543 (637)
.||.+|+|+|--|++++.. |- +---|+|...+.+.- +.+.|+.- +.-|-++. -..++.+||.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~--l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPH--LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCC--CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 7999999999988888764 43 234677766455433 34566622 11222222 2235689998
Q ss_pred eeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE------------------------eC---HHHHHHHHHHHhcCC
Q 006633 544 IHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR------------------------DD---VDILVKIKSITDGME 596 (637)
Q Consensus 544 ~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~------------------------d~---~~~~~~~~~~~~~~~ 596 (637)
|-|..++-.-.- ...+-+|.+..|+|+|||.+++- |. ..-++.|.+++..-.
T Consensus 106 i~~~N~lHI~p~-~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 106 IFCINMLHISPW-SAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred eeehhHHHhcCH-HHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 666444432221 22368999999999999999995 11 114466777777766
Q ss_pred ceeEEeccCCCCCCcceEEEEEe
Q 006633 597 WEGRIADHENGPRQREKILFANK 619 (637)
Q Consensus 597 W~~~~~~~e~~~~~~~~~l~~~K 619 (637)
+.... .-+-| ...++||++|
T Consensus 185 L~l~~--~~~MP-ANN~~Lvfrk 204 (204)
T PF06080_consen 185 LELEE--DIDMP-ANNLLLVFRK 204 (204)
T ss_pred CccCc--ccccC-CCCeEEEEeC
Confidence 65432 11223 2478999887
No 420
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=88.51 E-value=1.9 Score=45.94 Aligned_cols=93 Identities=16% Similarity=0.257 Sum_probs=43.9
Q ss_pred cHHHHHHHHHHHhcccCCC---CCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCC--CeEEEE
Q 006633 200 GADAYIDDIGKLINLKDGS---IRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGV--PALIGV 270 (637)
Q Consensus 200 g~~~~i~~L~~lL~~~~g~---~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~--~~~~~~ 270 (637)
+.-.|+..|.+++...... .-++||||+|....-..|..+ .++++|+++..+..++.......+. .+.+..
T Consensus 81 ~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~ 160 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRK 160 (299)
T ss_dssp HHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE
T ss_pred hhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEE
Confidence 3456787888887643322 358999999988665555433 4566666554444444333322122 244433
Q ss_pred ecccc-----CCCCCCCeeEEEecccc
Q 006633 271 MASIR-----LPYPSRAFDMAHCSRCL 292 (637)
Q Consensus 271 ~d~~~-----Lpfpd~sFDlV~~s~~L 292 (637)
..... +.-++..||+..|+.-|
T Consensus 161 ~~~~~~i~~~i~~~~e~~dftmCNPPF 187 (299)
T PF05971_consen 161 QKNPDNIFDGIIQPNERFDFTMCNPPF 187 (299)
T ss_dssp --ST-SSTTTSTT--S-EEEEEE----
T ss_pred cCCccccchhhhcccceeeEEecCCcc
Confidence 32111 11234689999999855
No 421
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=88.46 E-value=0.87 Score=42.09 Aligned_cols=28 Identities=21% Similarity=0.481 Sum_probs=21.1
Q ss_pred EEEEECCCCchHHHHHhhcC--CEEEEcCc
Q 006633 221 TAIDTGCGVASWGAYLMSRN--ILAVSFAP 248 (637)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~--v~~vdisp 248 (637)
++||+|||.|.++..+++.+ ..++.+.|
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~ 30 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEP 30 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEec
Confidence 48999999999999988773 23555533
No 422
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=88.30 E-value=0.33 Score=50.81 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=33.8
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER 521 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR 521 (637)
..+|||+|||+|.++.+|+++.- .|+.+|..+.+++.+.++
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~ 83 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAET 83 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHh
Confidence 56899999999999999988743 567777777888888775
No 423
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=88.13 E-value=3.4 Score=41.70 Aligned_cols=100 Identities=19% Similarity=0.234 Sum_probs=66.9
Q ss_pred cccCCCCCEEEEECCCCchHHHHHhhc---C-CEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCC----CCCCCee
Q 006633 213 NLKDGSIRTAIDTGCGVASWGAYLMSR---N-ILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLP----YPSRAFD 284 (637)
Q Consensus 213 ~~~~g~~r~VLDIGCGtG~~a~~La~~---~-v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lp----fpd~sFD 284 (637)
++..++ +||=+|+.+|+....++.- | +.++.+++.... ..+..|.+|. ++.-...|+ +.| .-=...|
T Consensus 73 pi~~g~--~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~r-eLl~~a~~R~-Ni~PIL~DA-~~P~~Y~~~Ve~VD 147 (231)
T COG1889 73 PIKEGS--KVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMR-ELLDVAEKRP-NIIPILEDA-RKPEKYRHLVEKVD 147 (231)
T ss_pred CcCCCC--EEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHH-HHHHHHHhCC-Cceeeeccc-CCcHHhhhhccccc
Confidence 344555 9999999999887777664 4 788999996655 5666777664 332233333 333 1124589
Q ss_pred EEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 285 MAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 285 lV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+|+.--+ -+. +.+.+..++...||+||+++++.
T Consensus 148 viy~DVA---Qp~-Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 148 VIYQDVA---QPN-QAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred EEEEecC---Cch-HHHHHHHHHHHhcccCCeEEEEE
Confidence 9987321 121 45667888999999999988874
No 424
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=88.00 E-value=4 Score=43.12 Aligned_cols=97 Identities=9% Similarity=0.165 Sum_probs=52.9
Q ss_pred CCEEEEECCCCchHHHHHhh-c---C--CEEEEcCccccHHHHHHHHHH-------cCCCeEEEEeccccCCCCCCCeeE
Q 006633 219 IRTAIDTGCGVASWGAYLMS-R---N--ILAVSFAPRDTHEAQVQFALE-------RGVPALIGVMASIRLPYPSRAFDM 285 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~-~---~--v~~vdisp~Dls~a~i~~A~e-------rg~~~~~~~~d~~~Lpfpd~sFDl 285 (637)
..+|+=||+|.=-++..+.. + + +..+|+++ +.++.+++ -+....|..+|....+..-..||+
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~-----~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~Dv 195 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDP-----EANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDV 195 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSH-----HHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCH-----HHHHHHHHHHhhcccccCCeEEEecchhccccccccCCE
Confidence 45999999997766655443 3 3 34555544 33333321 134567887787766655568999
Q ss_pred EEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 286 AHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 286 V~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
|+..... ....++...++..+.+.++||..+++..
T Consensus 196 V~lAalV-g~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 196 VFLAALV-GMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp EEE-TT--S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred EEEhhhc-ccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 9986544 4444478899999999999999999974
No 425
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=87.78 E-value=5.9 Score=40.35 Aligned_cols=169 Identities=18% Similarity=0.178 Sum_probs=93.2
Q ss_pred cccCccccccCCcccccCcccCcchhcchhhHHHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhh--hcCCCeE
Q 006633 424 LTKWPERLNAIPPRVNRGAVDGVTAEMFREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAA--LVDDPLW 501 (637)
Q Consensus 424 ~~~wp~rl~~~p~~i~~~~~~g~~~~~f~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~--l~~~~v~ 501 (637)
+.+|-++.+-+- ..+..+.|.+++-.=..+.+.+.. . -.+++|+|+|-|-=|-= +...++-
T Consensus 31 L~~wN~~~NLt~---------------~~~~~e~~~rHilDSl~~~~~~~~-~-~~~~~DIGSGaGfPGipLAI~~p~~~ 93 (215)
T COG0357 31 LLKWNKAYNLTA---------------IRDPEELWQRHILDSLVLLPYLDG-K-AKRVLDIGSGAGFPGIPLAIAFPDLK 93 (215)
T ss_pred HHHhhHhcCCCC---------------CCCHHHHHHHHHHHHhhhhhcccc-c-CCEEEEeCCCCCCchhhHHHhccCCc
Confidence 567777775321 345578899887543333332222 1 58999999997733332 3333332
Q ss_pred EEEeccCCC-Ccchh-HHHHhhcc--cchhhccccccCCCCCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEE
Q 006633 502 VMNTVPVEA-KINTL-GVIYERGL--IGTYQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVI 577 (637)
Q Consensus 502 ~mnv~~~~~-~~~~l-~~~~eRgl--~~~~~~wce~~~~yp~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i 577 (637)
.-++.... ..+.| .++.|=|| +.++|.--|.|..=++-||+|=| .+-+++..++-=.-.+|++||.++
T Consensus 94 -vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vts-------RAva~L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 94 -VTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTS-------RAVASLNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred -EEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEe-------ehccchHHHHHHHHHhcccCCcch
Confidence 12222222 11223 23445566 44555444444431111999887 222444444444479999999875
Q ss_pred ---EEeCHHHHHHHHHHHhcCCceeEEeccCCCCCC-cceEEEE
Q 006633 578 ---IRDDVDILVKIKSITDGMEWEGRIADHENGPRQ-REKILFA 617 (637)
Q Consensus 578 ---~~d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~-~~~~l~~ 617 (637)
+.--.+++..+++....+.+.+..+..-.-|.. .++.|+.
T Consensus 166 ~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~~~p~~~~~r~l~i 209 (215)
T COG0357 166 AYKGLAGKDELPEAEKAILPLGGQVEKVFSLTVPELDGERHLVI 209 (215)
T ss_pred hhhHHhhhhhHHHHHHHHHhhcCcEEEEEEeecCCCCCceEEEE
Confidence 345566888888888888888876543333322 3444443
No 426
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=87.33 E-value=3.3 Score=45.23 Aligned_cols=130 Identities=17% Similarity=0.153 Sum_probs=73.1
Q ss_pred ecCCCCCCCcccHHHHHHHHHHHh--cccC--CCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHH
Q 006633 189 SFPGGGTMFPRGADAYIDDIGKLI--NLKD--GSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFAL 260 (637)
Q Consensus 189 ~Fpg~g~~f~~g~~~~i~~L~~lL--~~~~--g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~ 260 (637)
-+..|+.+|.+. |++ +..+.+ +... ...++||-+|.|.|.-++.|.+. .++-+|++|.+++-+.-..+.
T Consensus 259 LYldG~LQfsTr-De~--RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vl 335 (508)
T COG4262 259 LYLDGGLQFSTR-DEY--RYHESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVL 335 (508)
T ss_pred EEEcCceeeeec-hhh--hhhheeeecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHh
Confidence 367777777554 333 122222 1111 23468999999999999999987 466677766544433211111
Q ss_pred H---cC----CCeEEEEeccccC-CCCCCCeeEEEeccccccCCcC----CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 261 E---RG----VPALIGVMASIRL-PYPSRAFDMAHCSRCLIPWGQY----ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 261 e---rg----~~~~~~~~d~~~L-pfpd~sFDlV~~s~~L~h~~~~----d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
. .+ +.+.+...|+... .-..+.||.|+.-. ..+-.+. .-..+..-+.|.|+++|.+++...
T Consensus 336 r~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl-~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 336 RALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDL-PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred hhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeC-CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 1 11 2244444443222 22356899998632 1111110 223567778899999999999743
No 427
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=86.50 E-value=0.92 Score=47.10 Aligned_cols=112 Identities=13% Similarity=0.229 Sum_probs=66.5
Q ss_pred cCCCCCceeEeeecccchhhhhhhcC----C-CeEEEEeccCCCCcchhHHH----Hhhcc---cchhh-ccc-cccCC-
Q 006633 472 LAQPGRYRNLLDMNAYLGGFAAALVD----D-PLWVMNTVPVEAKINTLGVI----YERGL---IGTYQ-NWC-EAMST- 536 (637)
Q Consensus 472 l~~~~~~r~vlD~~~g~ggfaa~l~~----~-~v~~mnv~~~~~~~~~l~~~----~eRgl---~~~~~-~wc-e~~~~- 536 (637)
|.+ ...|++.|.|.|++..+|+. . .|++.-+ ++.....+ .+-|| +.+.| |.| +.|..
T Consensus 38 i~p---G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~-----~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 38 IRP---GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEF-----REDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp --T---T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEES-----SHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred CCC---CCEEEEecCCcHHHHHHHHHHhCCCeEEEcccc-----CHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 555 77999999999999999974 2 3444443 22333333 33455 44555 888 56732
Q ss_pred CCCccceeeeccccccCCCCcCHHHHHHHHhhcc-cCCcEEEE-EeCHHHHHHHHHHHhcCCcee
Q 006633 537 YPRTYDLIHADSIFSLYKDRCEMEDVLLEMDRIL-RPEGSVII-RDDVDILVKIKSITDGMEWEG 599 (637)
Q Consensus 537 yp~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiL-rPgG~~i~-~d~~~~~~~~~~~~~~~~W~~ 599 (637)
....+|.|-. +-=+--..+--+-++| ||||.+.. +-..+++.+.-+.++...|.-
T Consensus 110 ~~~~~DavfL--------Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~ 166 (247)
T PF08704_consen 110 LESDFDAVFL--------DLPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTD 166 (247)
T ss_dssp -TTSEEEEEE--------ESSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEE
T ss_pred ccCcccEEEE--------eCCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCee
Confidence 3477887766 2222236777888999 99999877 456666666666666666754
No 428
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=86.37 E-value=0.59 Score=49.20 Aligned_cols=95 Identities=21% Similarity=0.228 Sum_probs=57.4
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhcccccc-CCCC-CccceeeeccccccCCC
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAM-STYP-RTYDLIHADSIFSLYKD 555 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~-~~yp-~t~Dl~H~~~lfs~~~~ 555 (637)
--.++|+|||.| .++...|. .-+++-|....-++.+-.-|--.+ -.|.++ .+|+ .+||..-...+-+.+..
T Consensus 46 gsv~~d~gCGng---ky~~~~p~--~~~ig~D~c~~l~~~ak~~~~~~~--~~ad~l~~p~~~~s~d~~lsiavihhlsT 118 (293)
T KOG1331|consen 46 GSVGLDVGCGNG---KYLGVNPL--CLIIGCDLCTGLLGGAKRSGGDNV--CRADALKLPFREESFDAALSIAVIHHLST 118 (293)
T ss_pred cceeeecccCCc---ccCcCCCc--ceeeecchhhhhccccccCCCcee--ehhhhhcCCCCCCccccchhhhhhhhhhh
Confidence 667999999976 45554442 122333433222222222221111 112222 2343 78998666666666778
Q ss_pred CcCHHHHHHHHhhcccCCcEEEEE
Q 006633 556 RCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 556 ~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
++....+|-|+-|+|||||...|.
T Consensus 119 ~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 119 RERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEE
Confidence 888999999999999999996664
No 429
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=86.27 E-value=2.3 Score=43.49 Aligned_cols=133 Identities=17% Similarity=0.265 Sum_probs=85.0
Q ss_pred CceeEeeecccchhhhhhhcC----C-CeEEEEeccCCCCcchhHHHHhhcc-cchhhccccccCCCCCcccee--eecc
Q 006633 477 RYRNLLDMNAYLGGFAAALVD----D-PLWVMNTVPVEAKINTLGVIYERGL-IGTYQNWCEAMSTYPRTYDLI--HADS 548 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~----~-~v~~mnv~~~~~~~~~l~~~~eRgl-~~~~~~wce~~~~yp~t~Dl~--H~~~ 548 (637)
....||-.||..|....++.+ . .|+.+.+.|.... +.+.++-.|-- |.++.| .++|..|-++ ..|-
T Consensus 73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~r-dL~~la~~R~NIiPIl~D-----Ar~P~~Y~~lv~~VDv 146 (229)
T PF01269_consen 73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMR-DLLNLAKKRPNIIPILED-----ARHPEKYRMLVEMVDV 146 (229)
T ss_dssp TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHH-HHHHHHHHSTTEEEEES------TTSGGGGTTTS--EEE
T ss_pred CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHH-HHHHHhccCCceeeeecc-----CCChHHhhcccccccE
Confidence 467999999999999998864 3 4689999998776 78888888865 667765 3355444332 2444
Q ss_pred ccccCCCCcCHHHHHHHHhhcccCCcEEEEEe----------CHHHHHHHHHHHhcCCcee-EEeccCCCCCCcceEEEE
Q 006633 549 IFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD----------DVDILVKIKSITDGMEWEG-RIADHENGPRQREKILFA 617 (637)
Q Consensus 549 lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d----------~~~~~~~~~~~~~~~~W~~-~~~~~e~~~~~~~~~l~~ 617 (637)
+|..-..+-..+.+++-+..-||+||+++|.- ..++...-.+.++.-..+. ...+.| |+.++.++|.
T Consensus 147 I~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~Le--Py~~dH~~vv 224 (229)
T PF01269_consen 147 IFQDVAQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLE--PYERDHAMVV 224 (229)
T ss_dssp EEEE-SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-T--TTSTTEEEEE
T ss_pred EEecCCChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccC--CCCCCcEEEE
Confidence 55544445556688888999999999999962 2233333333344333444 234455 5566666654
No 430
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=86.24 E-value=6.6 Score=42.77 Aligned_cols=90 Identities=16% Similarity=0.180 Sum_probs=60.4
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcccchhhccccccCCC--CCccceeeeccccccCC
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTY--PRTYDLIHADSIFSLYK 554 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~y--p~t~Dl~H~~~lfs~~~ 554 (637)
...+|||+||..|||.-.|.+++. .|+.+|.. .+-+.+.+-+-+-.+.. ..|..- ++.+|++-||-+
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g-~l~~~L~~~~~V~h~~~--d~fr~~p~~~~vDwvVcDmv----- 279 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGM---FVTAVDNG-PMAQSLMDTGQVEHLRA--DGFKFRPPRKNVDWLVCDMV----- 279 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCC---EEEEEech-hcCHhhhCCCCEEEEec--cCcccCCCCCCCCEEEEecc-----
Confidence 467999999999999999999985 56666754 45555555555443321 122223 477999988322
Q ss_pred CCcCHHHHHHHHhhcccCC--cEEEEE
Q 006633 555 DRCEMEDVLLEMDRILRPE--GSVIIR 579 (637)
Q Consensus 555 ~~c~~~~~l~e~dRiLrPg--G~~i~~ 579 (637)
|.-..++-=|-++|.-| ..+|+.
T Consensus 280 --e~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 280 --EKPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred --cCHHHHHHHHHHHHhcCcccEEEEE
Confidence 33446666678888776 578886
No 431
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=86.23 E-value=0.96 Score=41.09 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=25.2
Q ss_pred CCEEEEECCCCchHHHHHhhcCCEEEEcC
Q 006633 219 IRTAIDTGCGVASWGAYLMSRNILAVSFA 247 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~~v~~vdis 247 (637)
....+|||||+|.+.--|.+.|..+.+++
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~GiD 87 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWGID 87 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCccccc
Confidence 44799999999999999988898888883
No 432
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=86.10 E-value=5.6 Score=38.78 Aligned_cols=120 Identities=20% Similarity=0.214 Sum_probs=69.7
Q ss_pred ECCCCchHHHHHhhc-----CCEEEEcCccccH-------HHHHHHHHHcCCCeEEEEeccccCC----CCCCCeeEEEe
Q 006633 225 TGCGVASWGAYLMSR-----NILAVSFAPRDTH-------EAQVQFALERGVPALIGVMASIRLP----YPSRAFDMAHC 288 (637)
Q Consensus 225 IGCGtG~~a~~La~~-----~v~~vdisp~Dls-------~a~i~~A~erg~~~~~~~~d~~~Lp----fpd~sFDlV~~ 288 (637)
||=|.=+|+..|++. ++++++++..+.- ...++.-++.|+.+.+. .|+..+. ...+.||.|+.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~-VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHG-VDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccC-CCCCcccccccccCCcCCEEEE
Confidence 566777888888876 4566666432111 11222223445555544 3555553 35688999998
Q ss_pred ccccccCCcC-----------CHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhcee
Q 006633 289 SRCLIPWGQY-----------ADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWK 357 (637)
Q Consensus 289 s~~L~h~~~~-----------d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~ 357 (637)
++-......+ -...++..+.++|+++|.+.++..... .+.. |. ++.+|+..++.
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~---py~~-----------W~-i~~lA~~~gl~ 146 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ---PYDS-----------WN-IEELAAEAGLV 146 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC---CCcc-----------cc-HHHHHHhcCCE
Confidence 7643221110 233578899999999999999853111 0111 22 66778877775
Q ss_pred eec
Q 006633 358 KLI 360 (637)
Q Consensus 358 ~v~ 360 (637)
.+.
T Consensus 147 l~~ 149 (166)
T PF10354_consen 147 LVR 149 (166)
T ss_pred EEE
Confidence 543
No 433
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=85.73 E-value=0.82 Score=47.46 Aligned_cols=42 Identities=10% Similarity=0.128 Sum_probs=32.6
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER 521 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR 521 (637)
...+|||+|||.|.+...|.++.. .|+.+|..+.+++.+.++
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~ 70 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDD 70 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHH
Confidence 367999999999999999998743 455566666777777664
No 434
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=85.68 E-value=4.4 Score=42.40 Aligned_cols=91 Identities=15% Similarity=0.245 Sum_probs=55.5
Q ss_pred CEEEEECCC-CchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccC-----CCCCCCeeEEEecccc
Q 006633 220 RTAIDTGCG-VASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL-----PYPSRAFDMAHCSRCL 292 (637)
Q Consensus 220 r~VLDIGCG-tG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~L-----pfpd~sFDlV~~s~~L 292 (637)
.+||..|+| .|..+..+++. ++.++.+ +.++...+.+++.+....+...+ ... ....+.+|+|+...
T Consensus 167 ~~vli~g~g~vG~~~~~la~~~G~~V~~~---~~s~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~D~vid~~-- 240 (338)
T cd08254 167 ETVLVIGLGGLGLNAVQIAKAMGAAVIAV---DIKEEKLELAKELGADEVLNSLD-DSPKDKKAAGLGGGFDVIFDFV-- 240 (338)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCEEEEE---cCCHHHHHHHHHhCCCEEEcCCC-cCHHHHHHHhcCCCceEEEECC--
Confidence 478888876 47777777765 6665555 33445555665555433222111 000 12346799988532
Q ss_pred ccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 293 IPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 293 ~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.....+.++.+.|+++|.++..+.
T Consensus 241 ------g~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 241 ------GTQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred ------CCHHHHHHHHHHhhcCCEEEEECC
Confidence 123478889999999999998753
No 435
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=85.21 E-value=0.63 Score=45.21 Aligned_cols=43 Identities=28% Similarity=0.449 Sum_probs=34.8
Q ss_pred CCCeeEEEeccccccCCcC---------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 280 SRAFDMAHCSRCLIPWGQY---------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 280 d~sFDlV~~s~~L~h~~~~---------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.++||.+.|..+++|..-. -..+.+.++.++|||||.|+++.|
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence 4679999998888775411 344788999999999999999987
No 436
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=84.80 E-value=4.5 Score=44.90 Aligned_cols=104 Identities=15% Similarity=0.235 Sum_probs=61.0
Q ss_pred ccCCCCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHH----HHHHHcCC-CeEEEEeccccCC---CCCC
Q 006633 214 LKDGSIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQV----QFALERGV-PALIGVMASIRLP---YPSR 281 (637)
Q Consensus 214 ~~~g~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i----~~A~erg~-~~~~~~~d~~~Lp---fpd~ 281 (637)
+.+..+.+|||+.+-.|.=+.+++.. |++ +.. |.....+ +.+.+-|+ +......|...+| |+.
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I-~An---D~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~- 311 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVI-FAN---DSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG- 311 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceE-Eec---ccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-
Confidence 34555669999999999544444432 432 222 3232322 23333454 3555666666555 454
Q ss_pred CeeEEE----eccccccCCcC----------------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 282 AFDMAH----CSRCLIPWGQY----------------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 282 sFDlV~----~s~~L~h~~~~----------------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+||-|+ |+..-.-+.+. -..++|..+...+++||+|+.++-
T Consensus 312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTC 372 (460)
T KOG1122|consen 312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTC 372 (460)
T ss_pred ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEee
Confidence 899998 44411011110 244688888999999999999964
No 437
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=84.73 E-value=5.8 Score=43.26 Aligned_cols=99 Identities=17% Similarity=0.090 Sum_probs=59.1
Q ss_pred CCEEEEECCCC-chHHHHHhhc-CC-EEEEcCccccHHHHHHHHHHcCCCeEEEEecccc-----C-CC-CCCCeeEEEe
Q 006633 219 IRTAIDTGCGV-ASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-----L-PY-PSRAFDMAHC 288 (637)
Q Consensus 219 ~r~VLDIGCGt-G~~a~~La~~-~v-~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~-----L-pf-pd~sFDlV~~ 288 (637)
+.+||.+|||. |..+..+++. +. .++.+ +.++...+.+++.+ .+.+....... + .+ ....+|+|+.
T Consensus 185 g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~---~~~~~~~~~~~~~~-~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld 260 (386)
T cd08283 185 GDTVAVWGCGPVGLFAARSAKLLGAERVIAI---DRVPERLEMARSHL-GAETINFEEVDDVVEALRELTGGRGPDVCID 260 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEE---cCCHHHHHHHHHcC-CcEEEcCCcchHHHHHHHHHcCCCCCCEEEE
Confidence 34899999987 7787778776 54 24444 33456666776663 12222111110 1 12 2346899986
Q ss_pred cccc-------ccC-------CcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 289 SRCL-------IPW-------GQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 289 s~~L-------~h~-------~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.-.- ++. .. +....+.++.+.|+|+|.+++.+.
T Consensus 261 ~vg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 261 AVGMEAHGSPLHKAEQALLKLET-DRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCCccccccccccccccccccc-CchHHHHHHHHHhccCCEEEEEcC
Confidence 4211 011 11 446688999999999999999853
No 438
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=84.70 E-value=6.2 Score=39.85 Aligned_cols=115 Identities=13% Similarity=0.031 Sum_probs=66.8
Q ss_pred EEEECCCCchHHHHHhhcC----CEEEEcCccccHHHHHHHHHHcC--CCeEEEEeccccCCCCCC-CeeEEEecccccc
Q 006633 222 AIDTGCGVASWGAYLMSRN----ILAVSFAPRDTHEAQVQFALERG--VPALIGVMASIRLPYPSR-AFDMAHCSRCLIP 294 (637)
Q Consensus 222 VLDIGCGtG~~a~~La~~~----v~~vdisp~Dls~a~i~~A~erg--~~~~~~~~d~~~Lpfpd~-sFDlV~~s~~L~h 294 (637)
|.||||--|.+..+|.+++ +.++|+.+.-+..+....+. .+ ..+.+..+|... +++.+ ..|.|+...+--
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~-~~l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGMGG- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAK-YGLEDRIEVRLGDGLE-VLKPGEDVDTIVIAGMGG- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH-TT-TTTEEEEE-SGGG-G--GGG---EEEEEEE-H-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH-cCCcccEEEEECCccc-ccCCCCCCCEEEEecCCH-
Confidence 6899999999999999985 56677766555544444433 33 236667666433 23333 378888765331
Q ss_pred CCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhceeeecc
Q 006633 295 WGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWKKLIQ 361 (637)
Q Consensus 295 ~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~~v~~ 361 (637)
. -...+|++....++..-.|++.-. . ....++......+|..+.+
T Consensus 78 -~--lI~~ILe~~~~~~~~~~~lILqP~------------~-------~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 78 -E--LIIEILEAGPEKLSSAKRLILQPN------------T-------HAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp -H--HHHHHHHHTGGGGTT--EEEEEES------------S--------HHHHHHHHHHTTEEEEEE
T ss_pred -H--HHHHHHHhhHHHhccCCeEEEeCC------------C-------ChHHHHHHHHHCCCEEEEe
Confidence 1 244567777777777677777521 1 1344777888889977764
No 439
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=84.52 E-value=9.1 Score=40.36 Aligned_cols=122 Identities=17% Similarity=0.162 Sum_probs=71.5
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcc---hhHHHHhhcc-------cchhhccccccCC--------CC
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKIN---TLGVIYERGL-------IGTYQNWCEAMST--------YP 538 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~---~l~~~~eRgl-------~~~~~~wce~~~~--------yp 538 (637)
.--+||==|||+|-.|--++.++..+-. .+-+-- ...+|+.... ..-.|.||...+. +|
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~g---nE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQG---NEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEE---EEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 3457999999999999999999875421 122211 1234444321 2344555432222 22
Q ss_pred ----C-----ccceeeeccccc-cCCCC------------------cCHHHHHHHHhhcccCCcEEEE--------EeC-
Q 006633 539 ----R-----TYDLIHADSIFS-LYKDR------------------CEMEDVLLEMDRILRPEGSVII--------RDD- 581 (637)
Q Consensus 539 ----~-----t~Dl~H~~~lfs-~~~~~------------------c~~~~~l~e~dRiLrPgG~~i~--------~d~- 581 (637)
. .=+|-.+.|=|. .|... -++-++|-.+-++|||||++|= .+.
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~ 212 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMS 212 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCC
Confidence 0 111212223332 22221 1355889999999999997663 233
Q ss_pred ------HH-HHHHHHHHHhcCCceeEE
Q 006633 582 ------VD-ILVKIKSITDGMEWEGRI 601 (637)
Q Consensus 582 ------~~-~~~~~~~~~~~~~W~~~~ 601 (637)
++ .++.|+++++.+.|+...
T Consensus 213 ~~~~~sveLs~eEi~~l~~~~GF~~~~ 239 (270)
T PF07942_consen 213 IPNEMSVELSLEEIKELIEKLGFEIEK 239 (270)
T ss_pred CCCCcccCCCHHHHHHHHHHCCCEEEE
Confidence 33 679999999999999875
No 440
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=84.39 E-value=4.6 Score=38.40 Aligned_cols=73 Identities=22% Similarity=0.239 Sum_probs=42.8
Q ss_pred ccHHHHHHHHHHc----CC--CeEEEEeccccCC--CCCCCeeEEEeccccccCCcC-------CHHHHHHHHHhcccCC
Q 006633 250 DTHEAQVQFALER----GV--PALIGVMASIRLP--YPSRAFDMAHCSRCLIPWGQY-------ADGLYLIEVDRVLRPG 314 (637)
Q Consensus 250 Dls~a~i~~A~er----g~--~~~~~~~d~~~Lp--fpd~sFDlV~~s~~L~h~~~~-------d~~~~L~ei~RvLKPG 314 (637)
|+.+.+++..+++ +. .+.+...+-+.+. .+.+.+|+|+.+....+-.+. .--.+++.+.++|+||
T Consensus 6 DIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~lL~~g 85 (140)
T PF06962_consen 6 DIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALELLKPG 85 (140)
T ss_dssp ES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHHEEEE
T ss_pred ECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHhhccC
Confidence 5555555555433 22 3666655555554 233589999998766443321 1236899999999999
Q ss_pred eEEEEEeC
Q 006633 315 GYWILSGP 322 (637)
Q Consensus 315 G~Lvls~p 322 (637)
|.+.+...
T Consensus 86 G~i~iv~Y 93 (140)
T PF06962_consen 86 GIITIVVY 93 (140)
T ss_dssp EEEEEEE-
T ss_pred CEEEEEEe
Confidence 99999864
No 441
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=84.31 E-value=9.3 Score=43.61 Aligned_cols=117 Identities=20% Similarity=0.265 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc----C--CEEEEcCccccHHHHHHHHHH----cCCC--eEE
Q 006633 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR----N--ILAVSFAPRDTHEAQVQFALE----RGVP--ALI 268 (637)
Q Consensus 201 ~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~----~--v~~vdisp~Dls~a~i~~A~e----rg~~--~~~ 268 (637)
....++.+.+++...+.. +|.|..||+|++.....+. . +...+. +......+.|+- ++++ +..
T Consensus 171 P~~v~~liv~~l~~~~~~--~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGq---E~~~~t~~l~~mN~~lhgi~~~~~i 245 (489)
T COG0286 171 PREVSELIVELLDPEPRN--SIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQ---EINDTTYRLAKMNLILHGIEGDANI 245 (489)
T ss_pred hHHHHHHHHHHcCCCCCC--eecCCCCchhHHHHHHHHHHHhhccceeEEEE---eCCHHHHHHHHHHHHHhCCCccccc
Confidence 355677788887654444 8999999999876554332 2 222222 333344444432 2333 455
Q ss_pred EEeccccCCC-----CCCCeeEEEeccccc--cCCcC---------------------CHHHHHHHHHhcccCCeEEEEE
Q 006633 269 GVMASIRLPY-----PSRAFDMAHCSRCLI--PWGQY---------------------ADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 269 ~~~d~~~Lpf-----pd~sFDlV~~s~~L~--h~~~~---------------------d~~~~L~ei~RvLKPGG~Lvls 320 (637)
...+...-|. ..+.||.|+++.-+. .|... ....+++.+.+.|+|||...++
T Consensus 246 ~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 246 RHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred cccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 5555444442 336799999865441 12110 2357899999999999977777
Q ss_pred eC
Q 006633 321 GP 322 (637)
Q Consensus 321 ~p 322 (637)
.|
T Consensus 326 l~ 327 (489)
T COG0286 326 LP 327 (489)
T ss_pred ec
Confidence 65
No 442
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=84.29 E-value=7.8 Score=40.36 Aligned_cols=100 Identities=14% Similarity=0.151 Sum_probs=56.4
Q ss_pred CCEEEEECCCCchHHHHHhhc---CCEEEEcCccccHHHHHHH------HH-HcCCCeEEEEecccc---CCCCCCC-ee
Q 006633 219 IRTAIDTGCGVASWGAYLMSR---NILAVSFAPRDTHEAQVQF------AL-ERGVPALIGVMASIR---LPYPSRA-FD 284 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~---~v~~vdisp~Dls~a~i~~------A~-erg~~~~~~~~d~~~---Lpfpd~s-FD 284 (637)
..+||++|.|+|.-+...+.. .+...|.. +.-...... +. +.+..+.+...+-.. ..+-... ||
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~--~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLP--KVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCch--hhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 457999999999666655553 33333331 222111111 11 112233333222111 1111222 99
Q ss_pred EEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 285 MAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 285 lV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+|+++.|+.+-. ..+.++.-+...|-.+|.+++..+
T Consensus 165 lilasDvvy~~~--~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 165 LILASDVVYEEE--SFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred EEEEeeeeecCC--cchhHHHHHHHHHhcCCeEEEEEe
Confidence 999999995555 678888889999999997777654
No 443
>PRK10742 putative methyltransferase; Provisional
Probab=83.94 E-value=4.4 Score=42.15 Aligned_cols=87 Identities=13% Similarity=0.067 Sum_probs=53.7
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHcC-----------CCeEEEEecccc
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALERG-----------VPALIGVMASIR 275 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~erg-----------~~~~~~~~d~~~ 275 (637)
.|.+.+.++.+...+|||.=+|.|..+..++.+|..++-+...-...+.++...++. ..+.+...+...
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~ 156 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT 156 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHH
Confidence 466666666655458999999999999999999866655533333333444443331 123444444322
Q ss_pred C-CCCCCCeeEEEeccccc
Q 006633 276 L-PYPSRAFDMAHCSRCLI 293 (637)
Q Consensus 276 L-pfpd~sFDlV~~s~~L~ 293 (637)
. .-...+||+|+.-..+-
T Consensus 157 ~L~~~~~~fDVVYlDPMfp 175 (250)
T PRK10742 157 ALTDITPRPQVVYLDPMFP 175 (250)
T ss_pred HHhhCCCCCcEEEECCCCC
Confidence 2 21234799999877663
No 444
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=83.24 E-value=1.9 Score=43.52 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=18.6
Q ss_pred HHHHHHHhhcccCCcEEEEEeCH
Q 006633 560 EDVLLEMDRILRPEGSVIIRDDV 582 (637)
Q Consensus 560 ~~~l~e~dRiLrPgG~~i~~d~~ 582 (637)
..+|.|.--+||+||.++..-++
T Consensus 163 ~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 163 STLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred hhHHHHHHhhhhcCceEEEEeeH
Confidence 37899999999999999875333
No 445
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=83.02 E-value=8.8 Score=39.68 Aligned_cols=117 Identities=18% Similarity=0.273 Sum_probs=71.9
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhhcc-cchhhccccccCCCC----Cccceeeeccccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYERGL-IGTYQNWCEAMSTYP----RTYDLIHADSIFS 551 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eRgl-~~~~~~wce~~~~yp----~t~Dl~H~~~lfs 551 (637)
..+++||+|+-+|||--.|.+++. --|..+|-..++|.-=+.... +-++ .-+-...-.| .-.|++-|+--|-
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~kLR~d~rV~~~-E~tN~r~l~~~~~~~~~d~~v~DvSFI 155 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHWKLRNDPRVIVL-ERTNVRYLTPEDFTEKPDLIVIDVSFI 155 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCC--cEEEEEEccCCccCHhHhcCCcEEEE-ecCChhhCCHHHcccCCCeEEEEeehh
Confidence 579999999999999999988754 122233333344433322222 0011 0000011111 2456777655443
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEE-------------------eC---HHHHHHHHHHHhcCCceeEEe
Q 006633 552 LYKDRCEMEDVLLEMDRILRPEGSVIIR-------------------DD---VDILVKIKSITDGMEWEGRIA 602 (637)
Q Consensus 552 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~-------------------d~---~~~~~~~~~~~~~~~W~~~~~ 602 (637)
.+..+|-.+..+|.|+|-++.- |. ..++.+|.+.++.+.|.+.-.
T Consensus 156 ------SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl 222 (245)
T COG1189 156 ------SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGL 222 (245)
T ss_pred ------hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeee
Confidence 3457899999999999988874 32 357889999999999998743
No 446
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=82.82 E-value=1.2 Score=45.73 Aligned_cols=97 Identities=14% Similarity=0.283 Sum_probs=67.9
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh---cccchhhccccccCCCC-Cccceeeeccccc-
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER---GLIGTYQNWCEAMSTYP-RTYDLIHADSIFS- 551 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR---gl~~~~~~wce~~~~yp-~t~Dl~H~~~lfs- 551 (637)
..-.++|+||+.|-.+..|...+| --+.-.|.+-.|++-..+- +++-.|-.=-|-|..|- +++|||-. -.|
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~v--ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiis--Slsl 147 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGV--EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIIS--SLSL 147 (325)
T ss_pred hCcceeecccchhhhhHHHHhcch--hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhh--hhhh
Confidence 466899999999999999999987 3333345555677666554 55555544447777775 99998654 111
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 552 LYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 552 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
.|. -+++--|...--+|+|.|.||-+
T Consensus 148 HW~--NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 148 HWT--NDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhh--ccCchHHHHHHHhcCCCccchhH
Confidence 122 34677788888899999999875
No 447
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=82.42 E-value=0.96 Score=46.67 Aligned_cols=43 Identities=12% Similarity=0.160 Sum_probs=31.5
Q ss_pred CCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh
Q 006633 476 GRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER 521 (637)
Q Consensus 476 ~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR 521 (637)
....+|||+|||+|.+.+.|.++.- .|+.+|..+.+++.+.++
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~ 70 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKL 70 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHH
Confidence 4467999999999999999988742 245555555677766544
No 448
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=82.06 E-value=17 Score=39.86 Aligned_cols=104 Identities=20% Similarity=0.200 Sum_probs=57.3
Q ss_pred ccCCCCCEEEEECCCCchHHHHHhhcCC------EEEEcCccccHHH---HHHHHHHcCCC--eEEEEeccccCC-----
Q 006633 214 LKDGSIRTAIDTGCGVASWGAYLMSRNI------LAVSFAPRDTHEA---QVQFALERGVP--ALIGVMASIRLP----- 277 (637)
Q Consensus 214 ~~~g~~r~VLDIGCGtG~~a~~La~~~v------~~vdisp~Dls~a---~i~~A~erg~~--~~~~~~d~~~Lp----- 277 (637)
.+++. +|||+.+..|+=++.|++.-. .++.- |.... ++.....+-.. ..+...+....|
T Consensus 153 v~p~~--~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaN---D~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~ 227 (375)
T KOG2198|consen 153 VKPGD--KVLDMCAAPGGKTAQLLEALHKDPTRGYVVAN---DVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLK 227 (375)
T ss_pred cCCCC--eeeeeccCCCccHHHHHHHHhcCCCCCeeEec---ccCHHHHHHHHHHHhccCCcceeeecccceeccccccc
Confidence 44544 999999999998888877511 22222 33322 33333333222 222222222222
Q ss_pred ----CCCCCeeEEEec-ccc------------cc-CCcC-------CHHHHHHHHHhcccCCeEEEEEeC
Q 006633 278 ----YPSRAFDMAHCS-RCL------------IP-WGQY-------ADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 278 ----fpd~sFDlV~~s-~~L------------~h-~~~~-------d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.....||-|+|- .|- -. |... -.-.+|.+..++||+||.++.++-
T Consensus 228 ~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTC 297 (375)
T KOG2198|consen 228 DGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTC 297 (375)
T ss_pred cCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 233469999870 000 00 1110 123578899999999999999964
No 449
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=79.95 E-value=7.6 Score=41.48 Aligned_cols=93 Identities=15% Similarity=0.100 Sum_probs=53.9
Q ss_pred CCEEEEECCC-CchHHHHHhhc-CC-EEEEcCccccHHHHHHHHHHcCCCeEEEEe--ccccCCCCCCCeeEEEeccccc
Q 006633 219 IRTAIDTGCG-VASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVM--ASIRLPYPSRAFDMAHCSRCLI 293 (637)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~~-~v-~~vdisp~Dls~a~i~~A~erg~~~~~~~~--d~~~Lpfpd~sFDlV~~s~~L~ 293 (637)
+.+||=+||| .|.++..+++. +. .++-+ +.++...+++++.|....+... +...+.-..+.||+|+-.-.
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~---~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G-- 244 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCA---DVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG-- 244 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEE---eCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC--
Confidence 4488888876 34555666654 54 23333 3345666777776654322111 11111111235898885421
Q ss_pred cCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 294 PWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 294 h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
....+....+.||+||.+++.+.
T Consensus 245 ------~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 ------HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 22467888999999999999864
No 450
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=79.76 E-value=7.2 Score=39.06 Aligned_cols=20 Identities=30% Similarity=0.607 Sum_probs=17.6
Q ss_pred CEEEEECCCCchHHHHHhhc
Q 006633 220 RTAIDTGCGVASWGAYLMSR 239 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~ 239 (637)
.+|||+||..|+|+.-..++
T Consensus 71 ~~VlD~G~APGsWsQVavqr 90 (232)
T KOG4589|consen 71 DTVLDCGAAPGSWSQVAVQR 90 (232)
T ss_pred CEEEEccCCCChHHHHHHHh
Confidence 49999999999998877776
No 451
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=79.43 E-value=4.8 Score=41.49 Aligned_cols=94 Identities=13% Similarity=0.245 Sum_probs=51.1
Q ss_pred ccHHHHHHHHHHHhcccCC----CCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHHcCCC--eEE
Q 006633 199 RGADAYIDDIGKLINLKDG----SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALERGVP--ALI 268 (637)
Q Consensus 199 ~g~~~~i~~L~~lL~~~~g----~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~erg~~--~~~ 268 (637)
.|...|+..|.++|....+ +..++||||.|.--.-..+--+ ..++.++++..++.+..-.....+.. +.+
T Consensus 55 PgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~l 134 (292)
T COG3129 55 PGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRL 134 (292)
T ss_pred CChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeE
Confidence 3456688899998864433 4458999998876443333222 34555665554444443333221221 222
Q ss_pred EEeccccCCC-----CCCCeeEEEecccc
Q 006633 269 GVMASIRLPY-----PSRAFDMAHCSRCL 292 (637)
Q Consensus 269 ~~~d~~~Lpf-----pd~sFDlV~~s~~L 292 (637)
.......--| ..+.||++.|+.-|
T Consensus 135 r~qk~~~~if~giig~nE~yd~tlCNPPF 163 (292)
T COG3129 135 RRQKDSDAIFNGIIGKNERYDATLCNPPF 163 (292)
T ss_pred EeccCccccccccccccceeeeEecCCCc
Confidence 2211111112 25779999999966
No 452
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=78.98 E-value=7.6 Score=41.61 Aligned_cols=94 Identities=20% Similarity=0.180 Sum_probs=56.4
Q ss_pred CCEEEEECCC-CchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccC--CCCCCCeeEEEecccccc
Q 006633 219 IRTAIDTGCG-VASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL--PYPSRAFDMAHCSRCLIP 294 (637)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~L--pfpd~sFDlV~~s~~L~h 294 (637)
+.+||=+|+| .|.++..+++. +..++.++..+.++...+++++.|... ........ ....+.||+|+-.-.
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~--v~~~~~~~~~~~~~~~~d~vid~~g--- 247 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATY--VNSSKTPVAEVKLVGEFDLIIEATG--- 247 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE--ecCCccchhhhhhcCCCCEEEECcC---
Confidence 3489989987 35666666665 665555544333556666777666432 11111110 001245898886431
Q ss_pred CCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 295 WGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 295 ~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
....+.+..++|++||.+++.+.
T Consensus 248 -----~~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 248 -----VPPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred -----CHHHHHHHHHHccCCcEEEEEec
Confidence 12367889999999999998764
No 453
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=78.51 E-value=3.5 Score=45.66 Aligned_cols=146 Identities=19% Similarity=0.223 Sum_probs=84.4
Q ss_pred chhhHHHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cccch
Q 006633 451 FREDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGT 526 (637)
Q Consensus 451 f~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl~~~ 526 (637)
+.++|..|-.+-..=+. +.... ..+.|||+=|.+|||+-+.+.-+- -.|+.+|.+..-|+.+.+- |+-+.
T Consensus 195 ~g~kTGfFlDqR~~R~~-l~~~~---~GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~~~~ 268 (393)
T COG1092 195 DGLKTGFFLDQRDNRRA-LGELA---AGKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGLDGD 268 (393)
T ss_pred CcccceeeHHhHHHHHH-Hhhhc---cCCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCCCcc
Confidence 44555566554332222 11111 267899999999999877665443 1234446665556655543 44344
Q ss_pred hhccc--cccCCC---CC---ccceeeecc-ccccCCCC-----cCHHHHHHHHhhcccCCcEEEEEe------CHHHHH
Q 006633 527 YQNWC--EAMSTY---PR---TYDLIHADS-IFSLYKDR-----CEMEDVLLEMDRILRPEGSVIIRD------DVDILV 586 (637)
Q Consensus 527 ~~~wc--e~~~~y---p~---t~Dl~H~~~-lfs~~~~~-----c~~~~~l~e~dRiLrPgG~~i~~d------~~~~~~ 586 (637)
-|.|- ..|.-. -| +||+|-.|= -|+.-+.. =+..+++...-+||+|||.+++.- ....+.
T Consensus 269 ~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~ 348 (393)
T COG1092 269 RHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLE 348 (393)
T ss_pred ceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHH
Confidence 45553 233332 23 999987642 24432221 233588899999999999999973 334566
Q ss_pred HHHHHHhcCCceeEEe
Q 006633 587 KIKSITDGMEWEGRIA 602 (637)
Q Consensus 587 ~~~~~~~~~~W~~~~~ 602 (637)
.|.+-+..+.=..++.
T Consensus 349 ~i~~a~~~~~~~~~~~ 364 (393)
T COG1092 349 IIARAAAAAGRRAQEI 364 (393)
T ss_pred HHHHHHHhcCCcEEEe
Confidence 6666555554444433
No 454
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=77.87 E-value=1.8 Score=46.03 Aligned_cols=44 Identities=20% Similarity=0.492 Sum_probs=35.8
Q ss_pred CCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006633 538 PRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV 582 (637)
Q Consensus 538 p~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 582 (637)
+..||+|-|-+||... +.-....++-.+.+.|+|||++++.-..
T Consensus 221 ~~~fD~I~cRNvliyF-~~~~~~~vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 221 PGPFDAIFCRNVMIYF-DKTTQERILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred CCCcceeeHhhHHhcC-CHHHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence 3789999999998654 3345679999999999999999987543
No 455
>PRK13699 putative methylase; Provisional
Probab=77.85 E-value=4.8 Score=41.16 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCceeEEeccCCCCCCcceEEEEEec
Q 006633 559 MEDVLLEMDRILRPEGSVIIRDDVDILVKIKSITDGMEWEGRIADHENGPRQREKILFANKK 620 (637)
Q Consensus 559 ~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~e~~~~~~~~~l~~~K~ 620 (637)
++.++.|+.|||+|||.+++--....+..+..+.+...|...- .+||.|+
T Consensus 51 ~~~~l~E~~RVLKpgg~l~if~~~~~~~~~~~al~~~GF~l~~------------~IiW~K~ 100 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVG------------HLVFTKN 100 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHHHCCCEEee------------EEEEECC
No 456
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=77.61 E-value=20 Score=39.04 Aligned_cols=126 Identities=13% Similarity=0.167 Sum_probs=69.0
Q ss_pred eEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cc--cchhh----ccccccCC---CC--------
Q 006633 480 NLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GL--IGTYQ----NWCEAMST---YP-------- 538 (637)
Q Consensus 480 ~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl--~~~~~----~wce~~~~---yp-------- 538 (637)
.|||++||+|.|+-+|.+.- -.|+.+|.+..++..+.+. |+ +.++. +|...+.. ++
T Consensus 200 ~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred cEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 39999999999999888752 2566667776777776653 22 11111 11111000 10
Q ss_pred -CccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCceeE---EeccCCCCCCcce
Q 006633 539 -RTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDDV-DILVKIKSITDGMEWEGR---IADHENGPRQREK 613 (637)
Q Consensus 539 -~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~~~W~~~---~~~~e~~~~~~~~ 613 (637)
..||+|=.| ..|..+..-+++ .|++|++.++++=+. ..-.-++.+.++ |++. .+|.-.....=|-
T Consensus 277 ~~~~d~v~lD------PPR~G~~~~~l~--~l~~~~~ivYvsC~p~tlaRDl~~L~~~--Y~l~~v~~~DmFP~T~HvE~ 346 (353)
T TIGR02143 277 SYNCSTIFVD------PPRAGLDPDTCK--LVQAYERILYISCNPETLKANLEQLSET--HRVERFALFDQFPYTHHMEC 346 (353)
T ss_pred cCCCCEEEEC------CCCCCCcHHHHH--HHHcCCcEEEEEcCHHHHHHHHHHHhcC--cEEEEEEEcccCCCCCcEEE
Confidence 014554431 124343322222 355699999998554 455667766655 7765 3454444434455
Q ss_pred EEEEE
Q 006633 614 ILFAN 618 (637)
Q Consensus 614 ~l~~~ 618 (637)
|....
T Consensus 347 v~lL~ 351 (353)
T TIGR02143 347 GVLLE 351 (353)
T ss_pred EEEEE
Confidence 55543
No 457
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=76.83 E-value=2.5 Score=46.62 Aligned_cols=91 Identities=14% Similarity=0.196 Sum_probs=52.8
Q ss_pred eeEeeecccchhhhhhhcC-CCeEEEEeccCCCCcchhHHHHh----hcccc--hhh-ccccccCCCCCccceeeecccc
Q 006633 479 RNLLDMNAYLGGFAAALVD-DPLWVMNTVPVEAKINTLGVIYE----RGLIG--TYQ-NWCEAMSTYPRTYDLIHADSIF 550 (637)
Q Consensus 479 r~vlD~~~g~ggfaa~l~~-~~v~~mnv~~~~~~~~~l~~~~e----Rgl~~--~~~-~wce~~~~yp~t~Dl~H~~~lf 550 (637)
.+|||+.||+|.||..++. .++ -.|+..|..++.+..+.+ -|+-. +++ |..+-+.. ...||+|..|- |
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~--~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~-~~~fD~V~lDP-~ 134 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGV--EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE-ERKFDVVDIDP-F 134 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh-cCCCCEEEECC-C
Confidence 4799999999999999854 342 223444554444444432 23311 222 22111211 45699999864 3
Q ss_pred ccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 551 SLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 551 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
++. ..+|-..-+.++|||.+.++
T Consensus 135 -----Gs~-~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -----GSP-APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -----CCc-HHHHHHHHHHhcCCCEEEEE
Confidence 222 23444436778999999997
No 458
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=76.76 E-value=28 Score=36.44 Aligned_cols=101 Identities=16% Similarity=0.188 Sum_probs=58.6
Q ss_pred CEEEEECCCCchHHHHHhhc--------CCEEEEcCccccHHHHHHHHHHc-CCCeEEEEecc----ccCCCCCCCeeEE
Q 006633 220 RTAIDTGCGVASWGAYLMSR--------NILAVSFAPRDTHEAQVQFALER-GVPALIGVMAS----IRLPYPSRAFDMA 286 (637)
Q Consensus 220 r~VLDIGCGtG~~a~~La~~--------~v~~vdisp~Dls~a~i~~A~er-g~~~~~~~~d~----~~Lpfpd~sFDlV 286 (637)
-+.+|+|.|+..=++.|... .+..+|++..-+.....+...+. ++++.-..++. ..+| ..+.==++
T Consensus 80 ~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~-~~~~Rl~~ 158 (321)
T COG4301 80 CTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP-RGGRRLFV 158 (321)
T ss_pred ceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc-CCCeEEEE
Confidence 38999999999877776653 24445554432332222222222 22332222221 1222 12222334
Q ss_pred EeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 287 HCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 287 ~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+....+-.+.+++-..+|..+...|+||-+|++-.
T Consensus 159 flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 159 FLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 44555667776577789999999999999999975
No 459
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=76.47 E-value=39 Score=34.90 Aligned_cols=161 Identities=12% Similarity=0.112 Sum_probs=88.2
Q ss_pred hhhHHHHHHHHHHHHHhhhccCCCCCceeEeeecccchhhhhhhcCCC-eEEEEeccCCCCcchhHHHHhhcccchhh--
Q 006633 452 REDTALWKKRVTYYKSVDYQLAQPGRYRNLLDMNAYLGGFAAALVDDP-LWVMNTVPVEAKINTLGVIYERGLIGTYQ-- 528 (637)
Q Consensus 452 ~~d~~~w~~~v~~y~~~~~~l~~~~~~r~vlD~~~g~ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~eRgl~~~~~-- 528 (637)
..|....++.+.+.--+ .. .+.++||=+|.|-|+.+..|.+.+ +--+-+|..|. ..+.++.+ .++..+
T Consensus 56 e~de~~y~e~l~h~~~~----~~-~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~--~Vv~~a~~--~f~~~~~~ 126 (246)
T PF01564_consen 56 ERDEFIYHEMLVHPPLL----LH-PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDP--EVVELARK--YFPEFSEG 126 (246)
T ss_dssp TTTHHHHHHHHHHHHHH----HS-SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-H--HHHHHHHH--HTHHHHTT
T ss_pred EechHHHHHHHhhhHhh----cC-CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecCh--HHHHHHHH--hchhhccc
Confidence 34444455544433222 22 468999999999999999999876 53344555554 35555433 223221
Q ss_pred -----------ccccccCCCCC-ccceeeeccccccCC-CCcCHHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHH
Q 006633 529 -----------NWCEAMSTYPR-TYDLIHADSIFSLYK-DRCEMEDVLLEMDRILRPEGSVIIRD-----DVDILVKIKS 590 (637)
Q Consensus 529 -----------~wce~~~~yp~-t~Dl~H~~~lfs~~~-~~c~~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~ 590 (637)
|=-+-+...++ +||+|=.+..-.... ..---...+-.+.|.|+|+|.+++.- ..+.+..+.+
T Consensus 127 ~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~ 206 (246)
T PF01564_consen 127 LDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILK 206 (246)
T ss_dssp GGSTTEEEEESTHHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHH
T ss_pred cCCCceEEEEhhhHHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHH
Confidence 11112344676 999876533211100 01112477888899999999999862 3456666777
Q ss_pred HHhcCCceeEEeccCCCCC--CcceEEEEEecC
Q 006633 591 ITDGMEWEGRIADHENGPR--QREKILFANKKY 621 (637)
Q Consensus 591 ~~~~~~W~~~~~~~e~~~~--~~~~~l~~~K~~ 621 (637)
.++...-.+..+-.---.. .---++++.|..
T Consensus 207 tl~~~F~~v~~~~~~vP~~~~~~~~~~~~s~~~ 239 (246)
T PF01564_consen 207 TLRSVFPQVKPYTAYVPSYGSGWWSFASASKDI 239 (246)
T ss_dssp HHHTTSSEEEEEEEECTTSCSSEEEEEEEESST
T ss_pred HHHHhCCceEEEEEEcCeecccceeEEEEeCCC
Confidence 6666666665432211111 123466666654
No 460
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=76.42 E-value=10 Score=39.54 Aligned_cols=141 Identities=23% Similarity=0.263 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHH----HcCCCeEEEEeccc
Q 006633 201 ADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFAL----ERGVPALIGVMASI 274 (637)
Q Consensus 201 ~~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~----erg~~~~~~~~d~~ 274 (637)
.+.+.+.+...++ ...+|+|||||.=-++...... +.+.+.+ |++..++++.. .-+++..+.+.|..
T Consensus 92 Ld~fY~~if~~~~----~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~---DID~~~ve~l~~~l~~l~~~~~~~v~Dl~ 164 (251)
T PF07091_consen 92 LDEFYDEIFGRIP----PPDSVLDIGCGLNPLALPWMPEAPGATYIAY---DIDSQLVEFLNAFLAVLGVPHDARVRDLL 164 (251)
T ss_dssp HHHHHHHHCCCS-------SEEEEET-TTCHHHHHTTTSSTT-EEEEE---ESBHHHHHHHHHHHHHTT-CEEEEEE-TT
T ss_pred HHHHHHHHHhcCC----CCchhhhhhccCCceehhhcccCCCcEEEEE---eCCHHHHHHHHHHHHhhCCCcceeEeeee
Confidence 3444444443332 2459999999999988876655 3444444 55555555443 33567777776655
Q ss_pred cCCCCCCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHh
Q 006633 275 RLPYPSRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSL 354 (637)
Q Consensus 275 ~Lpfpd~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l 354 (637)
.-+ +....|+++..-++ |..+........++...++ .=.++++.|...--.+.++ ........++.++..-
T Consensus 165 ~~~-~~~~~DlaLllK~l-p~le~q~~g~g~~ll~~~~-~~~~vVSfPtrSL~gR~~g------m~~~y~~~fe~~~~~~ 235 (251)
T PF07091_consen 165 SDP-PKEPADLALLLKTL-PCLERQRRGAGLELLDALR-SPHVVVSFPTRSLGGRNKG------MEQTYSAWFEALAAER 235 (251)
T ss_dssp TSH-TTSEESEEEEET-H-HHHHHHSTTHHHHHHHHSC-ESEEEEEEES-------TT------HHHCHHHHHHHHCCTT
T ss_pred ccC-CCCCcchhhHHHHH-HHHHHHhcchHHHHHHHhC-CCeEEEeccccccccCccc------cccCHHHHHHHhcccC
Confidence 543 45678999987666 4442111122223333332 2245556553332222222 1111224567777777
Q ss_pred cee
Q 006633 355 CWK 357 (637)
Q Consensus 355 ~w~ 357 (637)
+|.
T Consensus 236 ~~~ 238 (251)
T PF07091_consen 236 GWI 238 (251)
T ss_dssp CEE
T ss_pred Cce
Confidence 775
No 461
>PRK11524 putative methyltransferase; Provisional
Probab=76.28 E-value=2.2 Score=44.99 Aligned_cols=52 Identities=17% Similarity=0.087 Sum_probs=0.0
Q ss_pred EEEEeccccC--CCCCCCeeEEEecccccc---------------CCcCCHHHHHHHHHhcccCCeEEEE
Q 006633 267 LIGVMASIRL--PYPSRAFDMAHCSRCLIP---------------WGQYADGLYLIEVDRVLRPGGYWIL 319 (637)
Q Consensus 267 ~~~~~d~~~L--pfpd~sFDlV~~s~~L~h---------------~~~~d~~~~L~ei~RvLKPGG~Lvl 319 (637)
.+..+|.... .+++++||+|++..-+.- +.. -...++.++.|+|||||.+++
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~rvLK~~G~i~i 78 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFID-WLYEWIDECHRVLKKQGTMYI 78 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHH-HHHHHHHHHHHHhCCCcEEEE
No 462
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=76.26 E-value=15 Score=42.29 Aligned_cols=97 Identities=15% Similarity=0.168 Sum_probs=59.1
Q ss_pred CCEEEEECCCCc-hHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcCCCeEEEEecccc-----------C--C------
Q 006633 219 IRTAIDTGCGVA-SWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIR-----------L--P------ 277 (637)
Q Consensus 219 ~r~VLDIGCGtG-~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~-----------L--p------ 277 (637)
+.+|+=+|||.- ..+...++. |..++-+ |.+.+..+.+++-|.. +...+... + .
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~---D~~~~rle~aeslGA~--~v~i~~~e~~~~~~gya~~~s~~~~~~~~ 239 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAF---DTRPEVAEQVESMGAE--FLELDFEEEGGSGDGYAKVMSEEFIKAEM 239 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCe--EEEeccccccccccchhhhcchhHHHHHH
Confidence 559999999964 455555554 6554444 5666777777776543 22111111 0 0
Q ss_pred --CCC--CCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 278 --YPS--RAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 278 --fpd--~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+.+ +.+|+|+..-.. +-.. .+..+.+++.+.+||||.++..+-
T Consensus 240 ~~~~~~~~gaDVVIetag~-pg~~-aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 240 ALFAEQAKEVDIIITTALI-PGKP-APKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHhccCCCCEEEECCCC-Cccc-CcchHHHHHHHhcCCCCEEEEEcc
Confidence 111 458999986533 2221 233446999999999999998754
No 463
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=75.58 E-value=4.7 Score=36.33 Aligned_cols=84 Identities=24% Similarity=0.308 Sum_probs=54.8
Q ss_pred CCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccc---cC-C-CCCCCeeEEEeccccccCCcCCHH
Q 006633 228 GVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASI---RL-P-YPSRAFDMAHCSRCLIPWGQYADG 301 (637)
Q Consensus 228 GtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~---~L-p-fpd~sFDlV~~s~~L~h~~~~d~~ 301 (637)
|.|.++..+++. |..++.+ +.++...+.+++.|....+...+.. .+ . .+.+.+|+|+-.- -..
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~---~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~--------g~~ 69 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIAT---DRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCV--------GSG 69 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEE---ESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESS--------SSH
T ss_pred ChHHHHHHHHHHcCCEEEEE---ECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEec--------CcH
Confidence 467888888876 6666666 4566677788777743333211110 00 1 2345799998532 235
Q ss_pred HHHHHHHhcccCCeEEEEEeC
Q 006633 302 LYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 302 ~~L~ei~RvLKPGG~Lvls~p 322 (637)
..+.+...+|++||.+++.+-
T Consensus 70 ~~~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 70 DTLQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp HHHHHHHHHEEEEEEEEEESS
T ss_pred HHHHHHHHHhccCCEEEEEEc
Confidence 688999999999999999975
No 464
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=75.25 E-value=10 Score=40.25 Aligned_cols=121 Identities=12% Similarity=0.124 Sum_probs=70.6
Q ss_pred cCCCCCceeEeeecccchhhhhhhcCCC-eEEEEeccCCCCcchhHHHHhhcccchhhcccc-------------ccCCC
Q 006633 472 LAQPGRYRNLLDMNAYLGGFAAALVDDP-LWVMNTVPVEAKINTLGVIYERGLIGTYQNWCE-------------AMSTY 537 (637)
Q Consensus 472 l~~~~~~r~vlD~~~g~ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce-------------~~~~y 537 (637)
+.. +..|.||=+|.|-||.+..+.+.+ |=-+-+|.+|.. - +.+.|..++..|.++. -...+
T Consensus 72 ~ah-~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~--V--i~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~ 146 (282)
T COG0421 72 LAH-PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPA--V--IELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC 146 (282)
T ss_pred hhC-CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHH--H--HHHHHHhccCcccccCCCceEEEeccHHHHHHhC
Confidence 445 445899999999999999998875 422333444432 3 4455666666653332 11225
Q ss_pred CCccceeeeccccccCCCCcCH-HHHHHHHhhcccCCcEEEEEeC-----HHHHHHHHHHHhcCCc
Q 006633 538 PRTYDLIHADSIFSLYKDRCEM-EDVLLEMDRILRPEGSVIIRDD-----VDILVKIKSITDGMEW 597 (637)
Q Consensus 538 p~t~Dl~H~~~lfs~~~~~c~~-~~~l~e~dRiLrPgG~~i~~d~-----~~~~~~~~~~~~~~~W 597 (637)
+++||+|=.|.-=-...+.-.. +..+-...|.|+|+|.++..-. .+.+..+.+..+++.+
T Consensus 147 ~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~ 212 (282)
T COG0421 147 EEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFS 212 (282)
T ss_pred CCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhcc
Confidence 6789987652211000000011 4666777999999999999711 1334445555555533
No 465
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=74.75 E-value=2.8 Score=44.59 Aligned_cols=41 Identities=12% Similarity=0.242 Sum_probs=30.7
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER 521 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR 521 (637)
..+|||+|||.|.+..+|++... .|+.+|..+.+++.+.++
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~ 77 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKR 77 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHH
Confidence 56899999999999999987642 345566666677776553
No 466
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=74.57 E-value=2.6 Score=43.71 Aligned_cols=41 Identities=20% Similarity=0.354 Sum_probs=28.3
Q ss_pred Cccceeeeccccc---cCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 539 RTYDLIHADSIFS---LYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 539 ~t~Dl~H~~~lfs---~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
+-||+|-|-.|=- +-.+.-.+-.+|--+-|.|+|||++|+-
T Consensus 165 ~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 165 PEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 4578777633321 1123345678889999999999999995
No 467
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=74.07 E-value=35 Score=34.68 Aligned_cols=135 Identities=19% Similarity=0.320 Sum_probs=93.5
Q ss_pred CceeEeeecccchhhhhhhcC---CC-eEEEEeccCCCCcchhHHHHhhcc-cchhhccccccCCCCCcccee--eeccc
Q 006633 477 RYRNLLDMNAYLGGFAAALVD---DP-LWVMNTVPVEAKINTLGVIYERGL-IGTYQNWCEAMSTYPRTYDLI--HADSI 549 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~---~~-v~~mnv~~~~~~~~~l~~~~eRgl-~~~~~~wce~~~~yp~t~Dl~--H~~~l 549 (637)
....||=.||-.|.-..++.+ .+ |..+-++|.-.. ..|.++-+|-- +.++-| -.+|.+|-.+ |.+.+
T Consensus 76 ~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~r-eLl~~a~~R~Ni~PIL~D-----A~~P~~Y~~~Ve~VDvi 149 (231)
T COG1889 76 EGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMR-ELLDVAEKRPNIIPILED-----ARKPEKYRHLVEKVDVI 149 (231)
T ss_pred CCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHH-HHHHHHHhCCCceeeecc-----cCCcHHhhhhcccccEE
Confidence 467899999999999988854 45 689999998886 88888888854 677765 5577666543 45666
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEEEEE----------eCHHHHH-HHHHHHhcCCceeE-EeccCCCCCCcceEEEE
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSVIIR----------DDVDILV-KIKSITDGMEWEGR-IADHENGPRQREKILFA 617 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~----------d~~~~~~-~~~~~~~~~~W~~~-~~~~e~~~~~~~~~l~~ 617 (637)
|..-..+-..+-+..-++.-|++||++++. |..++.. .++++-.+ ..++. ..+.| |..++-++|.
T Consensus 150 y~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~-~f~i~e~~~Le--Pye~DH~~i~ 226 (231)
T COG1889 150 YQDVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEG-GFEILEVVDLE--PYEKDHALIV 226 (231)
T ss_pred EEecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhc-CceeeEEeccC--CcccceEEEE
Confidence 665555555667788899999999999885 4445554 44444332 23333 33444 6667777777
Q ss_pred Eec
Q 006633 618 NKK 620 (637)
Q Consensus 618 ~K~ 620 (637)
.|.
T Consensus 227 ~~~ 229 (231)
T COG1889 227 AKY 229 (231)
T ss_pred Eee
Confidence 653
No 468
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=73.82 E-value=3.4 Score=42.48 Aligned_cols=91 Identities=21% Similarity=0.286 Sum_probs=53.6
Q ss_pred CCEEEEECCCCchHHHHHhhc-------------CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccC--------C
Q 006633 219 IRTAIDTGCGVASWGAYLMSR-------------NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL--------P 277 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-------------~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~L--------p 277 (637)
..+++|+.+..|+|...|.++ .+.++|+.+. | --..+.-.++|+... -
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M---------a--PI~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM---------A--PIEGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC---------C--ccCceEEeecccCCHhHHHHHHHH
Confidence 458999999999999888765 1455555331 0 011123334443322 1
Q ss_pred CCCCCeeEEEeccc-----cccCCcC----CHHHHHHHHHhcccCCeEEEEE
Q 006633 278 YPSRAFDMAHCSRC-----LIPWGQY----ADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 278 fpd~sFDlV~~s~~-----L~h~~~~----d~~~~L~ei~RvLKPGG~Lvls 320 (637)
|....-|+|+|-.+ +|.+.+. -.-.+|.-...+|||||.|+--
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 44557899998433 3222210 1123456667999999999875
No 469
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=73.24 E-value=24 Score=40.48 Aligned_cols=143 Identities=17% Similarity=0.160 Sum_probs=77.0
Q ss_pred CceeEeeecccchhhhhhhcCCC-------eEEEEeccCCCCcchhHHHHhh----c-c-cchhh-c-ccccc---CCCC
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDP-------LWVMNTVPVEAKINTLGVIYER----G-L-IGTYQ-N-WCEAM---STYP 538 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~-------v~~mnv~~~~~~~~~l~~~~eR----g-l-~~~~~-~-wce~~---~~yp 538 (637)
...+|+|-+||.|+|.+++.++- -.-.|+...|-.+..+..+..+ + + +-+.+ | .|..+ ..+.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 35689999999999998886531 1346677777665555544432 2 1 11111 1 12222 1234
Q ss_pred CccceeeeccccccCC--------------------------------CCcC-----------HHHHHHHH-hhcccCCc
Q 006633 539 RTYDLIHADSIFSLYK--------------------------------DRCE-----------MEDVLLEM-DRILRPEG 574 (637)
Q Consensus 539 ~t~Dl~H~~~lfs~~~--------------------------------~~c~-----------~~~~l~e~-dRiLrPgG 574 (637)
..||+|=++==|...+ ..|. .-.+++|. -++|+|||
T Consensus 111 ~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G 190 (524)
T TIGR02987 111 DLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNG 190 (524)
T ss_pred CcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCC
Confidence 5799877654443221 1111 11245674 89999999
Q ss_pred EEEEEeCHH-----HHHHHHH-HHhcCCceeEEeccC------CCCCCcceEEEEEec
Q 006633 575 SVIIRDDVD-----ILVKIKS-ITDGMEWEGRIADHE------NGPRQREKILFANKK 620 (637)
Q Consensus 575 ~~i~~d~~~-----~~~~~~~-~~~~~~W~~~~~~~e------~~~~~~~~~l~~~K~ 620 (637)
++.+=-+.. .-..+++ +++.......+ +-+ ++...+-.|++.+|.
T Consensus 191 ~~~~I~P~s~l~~~~~~~lR~~ll~~~~i~~I~-~f~~~~~lF~~v~~~~~i~~l~k~ 247 (524)
T TIGR02987 191 YVSIISPASWLGDKTGENLREYIFNNRLINCIQ-YFQEEAKLFSGVNQATSIIHLNSG 247 (524)
T ss_pred EEEEEEChHHhcCccHHHHHHHHHhCCeeEEEE-ECCccccCcCCCCcceEEEEEECC
Confidence 987633222 2245555 45555554332 222 123345567777764
No 470
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=72.93 E-value=25 Score=37.40 Aligned_cols=88 Identities=19% Similarity=0.112 Sum_probs=52.6
Q ss_pred CCEEEEECCC-CchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCC
Q 006633 219 IRTAIDTGCG-VASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (637)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~ 296 (637)
+.+||=.|+| .|.++..+++. +..++.+ +.+....+++++.|....+. .... ..+.+|+++-...
T Consensus 166 g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~---~~~~~~~~~a~~~Ga~~vi~---~~~~--~~~~~d~~i~~~~----- 232 (329)
T TIGR02822 166 GGRLGLYGFGGSAHLTAQVALAQGATVHVM---TRGAAARRLALALGAASAGG---AYDT--PPEPLDAAILFAP----- 232 (329)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHCCCeEEEE---eCChHHHHHHHHhCCceecc---cccc--CcccceEEEECCC-----
Confidence 3489999975 34455556554 6555444 33445567777777543221 1111 1235787653221
Q ss_pred cCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 297 QYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 297 ~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
....+.+..+.|++||.+++.+.
T Consensus 233 ---~~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 233 ---AGGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ---cHHHHHHHHHhhCCCcEEEEEec
Confidence 12378889999999999999864
No 471
>KOG2730 consensus Methylase [General function prediction only]
Probab=72.02 E-value=9.3 Score=39.20 Aligned_cols=90 Identities=20% Similarity=0.294 Sum_probs=55.6
Q ss_pred EEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc----CCC--eEEEEecccc----CCCCCCCeeEEEecc
Q 006633 221 TAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----GVP--ALIGVMASIR----LPYPSRAFDMAHCSR 290 (637)
Q Consensus 221 ~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er----g~~--~~~~~~d~~~----Lpfpd~sFDlV~~s~ 290 (637)
.|+|.-||.|..+...+.++..++++ |+++..+..|+++ |++ +.|.++|... +.+...-+|+|+-+.
T Consensus 97 ~iidaf~g~gGntiqfa~~~~~VisI---diDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 97 VIVDAFCGVGGNTIQFALQGPYVIAI---DIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP 173 (263)
T ss_pred hhhhhhhcCCchHHHHHHhCCeEEEE---eccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence 79999999999999999887655555 5555556566544 443 6777777433 345545577777665
Q ss_pred ccccCCcC-CHHHHHHHHHhcccCCeE
Q 006633 291 CLIPWGQY-ADGLYLIEVDRVLRPGGY 316 (637)
Q Consensus 291 ~L~h~~~~-d~~~~L~ei~RvLKPGG~ 316 (637)
+|... ....-+..+...+.|.|.
T Consensus 174 ---pwggp~y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 174 ---PWGGPSYLRADVYDLETHLKPMGT 197 (263)
T ss_pred ---CCCCcchhhhhhhhhhhhcchhHH
Confidence 44421 233334444555555543
No 472
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=71.99 E-value=2.6 Score=42.38 Aligned_cols=89 Identities=15% Similarity=0.172 Sum_probs=44.4
Q ss_pred ceeEeeecccchhhhhhhcC--CC--eEEEEeccCCCCcchhHHHHhh-cc---cchhhccccccCCCCCccceeeeccc
Q 006633 478 YRNLLDMNAYLGGFAAALVD--DP--LWVMNTVPVEAKINTLGVIYER-GL---IGTYQNWCEAMSTYPRTYDLIHADSI 549 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~--~~--v~~mnv~~~~~~~~~l~~~~eR-gl---~~~~~~wce~~~~yp~t~Dl~H~~~l 549 (637)
..+|+||-||+|.|+-.+++ +. |+..=+-|..- ..|....++ ++ |-.++.=|..|.. ...||-+.+
T Consensus 102 ~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~--~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim--- 175 (200)
T PF02475_consen 102 GEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAV--EYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIM--- 175 (200)
T ss_dssp T-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHH--HHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE---
T ss_pred ceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHH--HHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEE---
Confidence 67999999999999988876 43 44433333221 233333322 23 2222211223333 577885555
Q ss_pred cccCCCCcCHHHHHHHHhhcccCCcEE
Q 006633 550 FSLYKDRCEMEDVLLEMDRILRPEGSV 576 (637)
Q Consensus 550 fs~~~~~c~~~~~l~e~dRiLrPgG~~ 576 (637)
.+...+ ...|-+.-+++|+||.+
T Consensus 176 --~lp~~~--~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 176 --NLPESS--LEFLDAALSLLKEGGII 198 (200)
T ss_dssp ----TSSG--GGGHHHHHHHEEEEEEE
T ss_pred --CChHHH--HHHHHHHHHHhcCCcEE
Confidence 122121 25677788899999876
No 473
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=71.29 E-value=4.7 Score=42.88 Aligned_cols=98 Identities=16% Similarity=0.164 Sum_probs=61.3
Q ss_pred CCCEEEEECCCCchHHHHHhhc----CCEEEEcCccccHHHHHHHHHH---------cCCCeEEEEeccccC--CCCCCC
Q 006633 218 SIRTAIDTGCGVASWGAYLMSR----NILAVSFAPRDTHEAQVQFALE---------RGVPALIGVMASIRL--PYPSRA 282 (637)
Q Consensus 218 ~~r~VLDIGCGtG~~a~~La~~----~v~~vdisp~Dls~a~i~~A~e---------rg~~~~~~~~d~~~L--pfpd~s 282 (637)
..+++|=||-|-|.+.+...++ ++..+++ ....++..++ .+..+.+..+|...+ ..+.+.
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~ei-----D~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~ 195 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEI-----DENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENP 195 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehh-----hHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCC
Confidence 3568999999999998888776 3444444 2223322221 133455555554332 245789
Q ss_pred eeEEEeccccccCCcC---CHHHHHHHHHhcccCCeEEEEEe
Q 006633 283 FDMAHCSRCLIPWGQY---ADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 283 FDlV~~s~~L~h~~~~---d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
||+|+.-..= +..+. -.+.++..+.+.||+||+++..+
T Consensus 196 ~dVii~dssd-pvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 196 FDVIITDSSD-PVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred ceEEEEecCC-ccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 9999962211 22210 34567888999999999999975
No 474
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=70.89 E-value=22 Score=39.10 Aligned_cols=111 Identities=21% Similarity=0.118 Sum_probs=65.7
Q ss_pred HHHHhcccCCCCCEEEEECCCCc----hHHHHHhhc-------CCEEEEc----Ccc---ccHHHHHHHHHHcCCCeEEE
Q 006633 208 IGKLINLKDGSIRTAIDTGCGVA----SWGAYLMSR-------NILAVSF----APR---DTHEAQVQFALERGVPALIG 269 (637)
Q Consensus 208 L~~lL~~~~g~~r~VLDIGCGtG----~~a~~La~~-------~v~~vdi----sp~---Dls~a~i~~A~erg~~~~~~ 269 (637)
|.+.+... ..-.|+|+|.|.| ++...|+.+ .+++++. ... +......++|+.-|++..|.
T Consensus 102 IleA~~g~--~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~ 179 (374)
T PF03514_consen 102 ILEAFEGE--RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFH 179 (374)
T ss_pred HHHHhccC--cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEE
Confidence 44444322 3348999999999 455566665 2455544 111 12222345677778888887
Q ss_pred Eec---cc-----cCCCCCCCeeEEEeccccccCCcC-----CHHHHHHHHHhcccCCeEEEEE
Q 006633 270 VMA---SI-----RLPYPSRAFDMAHCSRCLIPWGQY-----ADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 270 ~~d---~~-----~Lpfpd~sFDlV~~s~~L~h~~~~-----d~~~~L~ei~RvLKPGG~Lvls 320 (637)
..- .+ .+...++..=+|.|...++|+..+ ++...+-...|-|+|.-..+..
T Consensus 180 ~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 180 PVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE 243 (374)
T ss_pred ecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence 642 11 223344556666677878777632 3445667778899999666554
No 475
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=70.86 E-value=1.9 Score=37.92 Aligned_cols=95 Identities=20% Similarity=0.200 Sum_probs=32.8
Q ss_pred eeecccchhhhhhhcCC----C-eEEEEeccCCCCcchhHHHHhhcccchhhccc----cccCCCC-Cccceeeeccccc
Q 006633 482 LDMNAYLGGFAAALVDD----P-LWVMNTVPVEAKINTLGVIYERGLIGTYQNWC----EAMSTYP-RTYDLIHADSIFS 551 (637)
Q Consensus 482 lD~~~g~ggfaa~l~~~----~-v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wc----e~~~~yp-~t~Dl~H~~~lfs 551 (637)
|.+|+..|..+..|.+- . ..+..|-+-...+....++.+.++-..++-.+ +.++.++ +.||++|.+|-=+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~ 80 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS 80 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC
Confidence 45787788777666542 2 12233333322113344444456644333222 2334466 8999999865211
Q ss_pred cCCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006633 552 LYKDRCEMEDVLLEMDRILRPEGSVIIRD 580 (637)
Q Consensus 552 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 580 (637)
......-|..+-+.|+|||.+++-|
T Consensus 81 ----~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 81 ----YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred ----HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 1223345666678899999998855
No 476
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=70.80 E-value=9.1 Score=39.50 Aligned_cols=88 Identities=17% Similarity=0.183 Sum_probs=44.0
Q ss_pred HHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHHHc----C-C------CeEEEEecccc
Q 006633 207 DIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFALER----G-V------PALIGVMASIR 275 (637)
Q Consensus 207 ~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~er----g-~------~~~~~~~d~~~ 275 (637)
.|.+.+.++++...+|||.=+|-|.-+..|+..|..++.+...-+-...++.+.++ . . .+.+...|...
T Consensus 64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~ 143 (234)
T PF04445_consen 64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE 143 (234)
T ss_dssp HHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC
T ss_pred HHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH
Confidence 35566666666555899999999998888887766555553322222333332221 1 1 24566666443
Q ss_pred -CCCCCCCeeEEEecccccc
Q 006633 276 -LPYPSRAFDMAHCSRCLIP 294 (637)
Q Consensus 276 -Lpfpd~sFDlV~~s~~L~h 294 (637)
|..++++||+|+.-.+|-+
T Consensus 144 ~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 144 YLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp HCCCHSS--SEEEE--S---
T ss_pred HHhhcCCCCCEEEECCCCCC
Confidence 4556899999999877743
No 477
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=70.45 E-value=16 Score=38.08 Aligned_cols=100 Identities=17% Similarity=0.226 Sum_probs=63.1
Q ss_pred ccCCCCCEEEEECCCCchHHHHHhhc-----CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCC----CCCee
Q 006633 214 LKDGSIRTAIDTGCGVASWGAYLMSR-----NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYP----SRAFD 284 (637)
Q Consensus 214 ~~~g~~r~VLDIGCGtG~~a~~La~~-----~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfp----d~sFD 284 (637)
+++++ +||=+|+++|.....+.+- -|.++.++...- ...+..|.+|- ++.-.+-|+ +.|.. -.-.|
T Consensus 154 ikpGs--KVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsG-RdL~nmAkkRt-NiiPIiEDA-rhP~KYRmlVgmVD 228 (317)
T KOG1596|consen 154 IKPGS--KVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSG-RDLINMAKKRT-NIIPIIEDA-RHPAKYRMLVGMVD 228 (317)
T ss_pred ecCCc--eEEEeeccCCceeehhhcccCCCceEEEEEecccch-HHHHHHhhccC-CceeeeccC-CCchheeeeeeeEE
Confidence 44555 9999999999877776654 367788876432 34556676663 333333333 33321 23578
Q ss_pred EEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 285 MAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 285 lV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
+|++-- .-++ ....+..+....||+||.|+++..
T Consensus 229 vIFaDv---aqpd-q~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 229 VIFADV---AQPD-QARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred EEeccC---CCch-hhhhhhhhhhhhhccCCeEEEEEe
Confidence 887632 1222 445567788899999999999853
No 478
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=70.17 E-value=13 Score=42.54 Aligned_cols=101 Identities=17% Similarity=0.076 Sum_probs=60.3
Q ss_pred CCEEEEECCCCchHHHHHhh------cCCE--EEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEecc
Q 006633 219 IRTAIDTGCGVASWGAYLMS------RNIL--AVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSR 290 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~------~~v~--~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~ 290 (637)
...|+=+|+|-|-+....++ +.|. ++.=.|..+..-+-..-..-...+.+...|...++-|....|++++-.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSEL 447 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSEL 447 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHh
Confidence 34678899999976654433 3443 444444333211111111112346777778888876668899999743
Q ss_pred ccccCCc-CCHHHHHHHHHhcccCCeEEEEE
Q 006633 291 CLIPWGQ-YADGLYLIEVDRVLRPGGYWILS 320 (637)
Q Consensus 291 ~L~h~~~-~d~~~~L~ei~RvLKPGG~Lvls 320 (637)
.- -+.+ +--...|.-+-+.|||.|..+=.
T Consensus 448 LG-SFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 448 LG-SFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred hc-cccCccCCHHHHHHHHhhcCCCceEccc
Confidence 22 2321 12346899999999999877544
No 479
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=69.80 E-value=3.5 Score=43.54 Aligned_cols=38 Identities=13% Similarity=0.302 Sum_probs=27.2
Q ss_pred CeeEEEeccccccCCcCCHHHH-HHHHHhcccCCeEEEEEe
Q 006633 282 AFDMAHCSRCLIPWGQYADGLY-LIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 282 sFDlV~~s~~L~h~~~~d~~~~-L~ei~RvLKPGG~Lvls~ 321 (637)
.||+|.++..+.... ....+ .......+++.|.+++.+
T Consensus 196 ~ydlIlsSetiy~~~--~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 196 HYDLILSSETIYSID--SLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred chhhhhhhhhhhCcc--hhhhhHhhhhhhcCCccchhhhhh
Confidence 689998888774444 33333 667778889999988874
No 480
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=69.18 E-value=4.1 Score=38.20 Aligned_cols=58 Identities=12% Similarity=0.154 Sum_probs=36.3
Q ss_pred HHHHHHhhhcc----CCCCCceeEeeecccchhhhhhhcC-----CCeEEEEeccCCCCcchhHHHHhh
Q 006633 462 VTYYKSVDYQL----AQPGRYRNLLDMNAYLGGFAAALVD-----DPLWVMNTVPVEAKINTLGVIYER 521 (637)
Q Consensus 462 v~~y~~~~~~l----~~~~~~r~vlD~~~g~ggfaa~l~~-----~~v~~mnv~~~~~~~~~l~~~~eR 521 (637)
|.++..++..+ ....+...|.|+|||-|=.+.+|.. . ...+|+.+|..+..+..+.+|
T Consensus 6 i~~~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~--~~~~v~~iD~~~~~~~~a~~~ 72 (141)
T PF13679_consen 6 IERMAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSS--PNLRVLGIDCNESLVESAQKR 72 (141)
T ss_pred HHHHHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcC--CCCeEEEEECCcHHHHHHHHH
Confidence 55555554432 1226799999999999999988877 4 234555556554444444444
No 481
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=69.12 E-value=41 Score=35.19 Aligned_cols=93 Identities=15% Similarity=0.130 Sum_probs=52.1
Q ss_pred CCEEEEECCC-CchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccCCCCCCCeeEEEeccccccCC
Q 006633 219 IRTAIDTGCG-VASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRLPYPSRAFDMAHCSRCLIPWG 296 (637)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~Lpfpd~sFDlV~~s~~L~h~~ 296 (637)
+.+||-+|+| .|..+..+++. ++.++.++ .+....+.+.+.+....+.........-..+.+|+++...
T Consensus 163 ~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~------ 233 (330)
T cd08245 163 GERVAVLGIGGLGHLAVQYARAMGFETVAIT---RSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTV------ 233 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEe---CCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECC------
Confidence 3488888887 66666666665 66555542 2334455554444322221110000000124589888532
Q ss_pred cCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 297 QYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 297 ~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
-....+.++.+.|+++|.++..+.
T Consensus 234 --~~~~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 234 --VSGAAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred --CcHHHHHHHHHhcccCCEEEEECC
Confidence 123467888999999999998753
No 482
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=67.94 E-value=69 Score=33.43 Aligned_cols=103 Identities=14% Similarity=0.028 Sum_probs=66.3
Q ss_pred CCEEEEECCCCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcC----CCeEEEEeccc-----cC---CCCCCCeeE
Q 006633 219 IRTAIDTGCGVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERG----VPALIGVMASI-----RL---PYPSRAFDM 285 (637)
Q Consensus 219 ~r~VLDIGCGtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg----~~~~~~~~d~~-----~L---pfpd~sFDl 285 (637)
.+.|+.+|||-=+-...|... ++..++++-.+..+...+.-.+.+ ....+...|.. .| .|..+.--+
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl 161 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTA 161 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCee
Confidence 347999999998877777544 688888854443333333332221 23444444432 11 132333457
Q ss_pred EEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 286 AHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 286 V~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
+++-.+++++.+++...+|..+.+...||+.+++..
T Consensus 162 ~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~ 197 (260)
T TIGR00027 162 WLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDY 197 (260)
T ss_pred eeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 777777877777677789999999988999999974
No 483
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=67.81 E-value=40 Score=33.53 Aligned_cols=90 Identities=20% Similarity=0.173 Sum_probs=52.4
Q ss_pred CCEEEEECCCC-chHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccC-------CCCCCCeeEEEec
Q 006633 219 IRTAIDTGCGV-ASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL-------PYPSRAFDMAHCS 289 (637)
Q Consensus 219 ~r~VLDIGCGt-G~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~L-------pfpd~sFDlV~~s 289 (637)
+.+||.+|+|. |..+..+++. +..++.++. ++...+.+.+.+....+ +.... ....+.+|+|+..
T Consensus 135 ~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~d~vi~~ 208 (271)
T cd05188 135 GDTVLVLGAGGVGLLAAQLAKAAGARVIVTDR---SDEKLELAKELGADHVI---DYKEEDLEEELRLTGGGGADVVIDA 208 (271)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEcC---CHHHHHHHHHhCCceec---cCCcCCHHHHHHHhcCCCCCEEEEC
Confidence 44899999985 6666666654 555555532 23344445444422111 11111 1124569999864
Q ss_pred cccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 290 RCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 290 ~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.. ....+..+.+.|+++|.++..+.
T Consensus 209 ~~--------~~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 209 VG--------GPETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred CC--------CHHHHHHHHHhcccCCEEEEEcc
Confidence 31 11357778899999999998754
No 484
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=67.22 E-value=35 Score=34.20 Aligned_cols=126 Identities=18% Similarity=0.202 Sum_probs=69.3
Q ss_pred CceeEeeecccchhhhhhhcCC---CeEEE--EeccCCCCcchhHHHHhhcc-cchhh-cccccc-----------CCC-
Q 006633 477 RYRNLLDMNAYLGGFAAALVDD---PLWVM--NTVPVEAKINTLGVIYERGL-IGTYQ-NWCEAM-----------STY- 537 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~---~v~~m--nv~~~~~~~~~l~~~~eRgl-~~~~~-~wce~~-----------~~y- 537 (637)
....+|++|||.|-.-++|++. ++..| -+.|.-. ..|+..+.-.+. |-++. |.-..+ ++|
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~-~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEAL-EATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYV 121 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHH-HHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcC
Confidence 3778999999999988888765 34333 2333322 255555554444 22211 211111 223
Q ss_pred CCccceeeeccccccCC----CCcCHHHHHHHHhhcccCCcEEEEEe-CHHHHHHHHHHHhcCCceeEEec
Q 006633 538 PRTYDLIHADSIFSLYK----DRCEMEDVLLEMDRILRPEGSVIIRD-DVDILVKIKSITDGMEWEGRIAD 603 (637)
Q Consensus 538 p~t~Dl~H~~~lfs~~~----~~c~~~~~l~e~dRiLrPgG~~i~~d-~~~~~~~~~~~~~~~~W~~~~~~ 603 (637)
|-+.+=+-..++=+.|- .|--+..+|--++-||-|-|.+++-- ......+|-++.+.-.|.+++..
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~~ 192 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIAM 192 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEEE
Confidence 33333332333333222 22224466667889999999999842 22233455557777788777654
No 485
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=67.20 E-value=31 Score=36.08 Aligned_cols=92 Identities=16% Similarity=0.096 Sum_probs=51.3
Q ss_pred CCEEEEECCC-CchHHHHHhhc-CCE-EEEcCccccHHHHHHHHHHcCCCeEEEEeccccC----CCCCCCeeEEEeccc
Q 006633 219 IRTAIDTGCG-VASWGAYLMSR-NIL-AVSFAPRDTHEAQVQFALERGVPALIGVMASIRL----PYPSRAFDMAHCSRC 291 (637)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~~-~v~-~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~L----pfpd~sFDlV~~s~~ 291 (637)
+.+||-+|+| .|..+..+++. ++. ++-++. +......+.+.+.. .+...+.... ....+.+|+|+...
T Consensus 160 g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~---~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~vd~v~~~~- 234 (334)
T cd08234 160 GDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEP---NEEKLELAKKLGAT-ETVDPSREDPEAQKEDNPYGFDVVIEAT- 234 (334)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECC---CHHHHHHHHHhCCe-EEecCCCCCHHHHHHhcCCCCcEEEECC-
Confidence 3488988865 24555555554 554 333322 23344455555543 2221111110 11345689998642
Q ss_pred cccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 292 LIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 292 L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
.....+.++.+.|+++|.++..+.
T Consensus 235 -------~~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 235 -------GVPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred -------CChHHHHHHHHHHhcCCEEEEEec
Confidence 123477888999999999988754
No 486
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=66.86 E-value=19 Score=37.90 Aligned_cols=128 Identities=18% Similarity=0.282 Sum_probs=80.0
Q ss_pred chhhHHHHHHHHHHHHHhhhcc-CCC-CCceeEeeecccch----hhhhhhcCCCe----EEEEeccCCCCcchhHHHH-
Q 006633 451 FREDTALWKKRVTYYKSVDYQL-AQP-GRYRNLLDMNAYLG----GFAAALVDDPL----WVMNTVPVEAKINTLGVIY- 519 (637)
Q Consensus 451 f~~d~~~w~~~v~~y~~~~~~l-~~~-~~~r~vlD~~~g~g----gfaa~l~~~~v----~~mnv~~~~~~~~~l~~~~- 519 (637)
|--|..+|..--.+ +++.| ... ++.=+|.-+||++| +.|-.|.+... +.+.|..+|.+..-|+.|.
T Consensus 71 FFR~~~~f~~l~~~---v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 71 FFRDPEHFEELRDE---VLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred hccCcHHHHHHHHH---HHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 55566666543321 22222 110 24678999999999 66666666543 5788999998866555432
Q ss_pred ---h-----hcccc---------------------------hhhccccccCCCCCccceeeeccccccCCCCcCHHHHHH
Q 006633 520 ---E-----RGLIG---------------------------TYQNWCEAMSTYPRTYDLIHADSIFSLYKDRCEMEDVLL 564 (637)
Q Consensus 520 ---e-----Rgl~~---------------------------~~~~wce~~~~yp~t~Dl~H~~~lfs~~~~~c~~~~~l~ 564 (637)
. +|+.. -+||.-+.-. ++.-||+|-|-.|+-.. ++-.-..|+-
T Consensus 148 G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIYF-d~~~q~~il~ 225 (268)
T COG1352 148 GIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIYF-DEETQERILR 225 (268)
T ss_pred CCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEee-CHHHHHHHHH
Confidence 2 44422 1122111111 66889999998886533 2333468999
Q ss_pred HHhhcccCCcEEEEEeCHH
Q 006633 565 EMDRILRPEGSVIIRDDVD 583 (637)
Q Consensus 565 e~dRiLrPgG~~i~~d~~~ 583 (637)
.+...|+|||++++-....
T Consensus 226 ~f~~~L~~gG~LflG~sE~ 244 (268)
T COG1352 226 RFADSLKPGGLLFLGHSET 244 (268)
T ss_pred HHHHHhCCCCEEEEccCcc
Confidence 9999999999999976653
No 487
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.76 E-value=2.1 Score=41.46 Aligned_cols=44 Identities=30% Similarity=0.407 Sum_probs=34.0
Q ss_pred CCC-CCccceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006633 535 STY-PRTYDLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIR 579 (637)
Q Consensus 535 ~~y-p~t~Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 579 (637)
+.| |++-|+|-|.++.....-+ .-...+-|--|+|||||++-|.
T Consensus 41 ~~F~dns~d~iyaeHvlEHlt~~-Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 41 SMFEDNSVDAIYAEHVLEHLTYD-EGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred ccCCCcchHHHHHHHHHHHHhHH-HHHHHHHHHHHHhCcCcEEEEE
Confidence 455 7999999998887643322 2247788999999999999986
No 488
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=66.65 E-value=2.7 Score=44.83 Aligned_cols=44 Identities=11% Similarity=0.067 Sum_probs=33.4
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER 521 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR 521 (637)
..+++|++||.||++.++++.-==--.|+..|..+.++..+.+|
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~ 63 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDR 63 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHh
Confidence 45899999999999999987610003477778888888888765
No 489
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=66.24 E-value=9 Score=40.70 Aligned_cols=123 Identities=21% Similarity=0.281 Sum_probs=65.4
Q ss_pred ceeEeeecccchhhhhhhcCCCeEEEEeccCCCCcchhHHHHhh----cccchhhc-ccc-ccCCC-----CCccceeee
Q 006633 478 YRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKINTLGVIYER----GLIGTYQN-WCE-AMSTY-----PRTYDLIHA 546 (637)
Q Consensus 478 ~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~eR----gl~~~~~~-wce-~~~~y-----p~t~Dl~H~ 546 (637)
.++|||.=|.+|||+.+.+.-+- ..|+-+|.+...|..+.+- |+-..-|. +++ .|... .+.||+|=+
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA--~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGA--KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTE--SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCceEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 46999999999999987666553 2334446665566655543 33111121 111 12111 257998765
Q ss_pred c------cccccCCCCcCHHHHHHHHhhcccCCcEEEEEeC------HHHHHHHHHHHhcCCceeEEeccC
Q 006633 547 D------SIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRDD------VDILVKIKSITDGMEWEGRIADHE 605 (637)
Q Consensus 547 ~------~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~------~~~~~~~~~~~~~~~W~~~~~~~e 605 (637)
| +-|+.. -+...++.-.-++|+|||.+++.-. ...++.+.+.+..++---+....+
T Consensus 202 DPPsF~k~~~~~~---~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~a~~~~~~~~~~~p~ 269 (286)
T PF10672_consen 202 DPPSFAKSKFDLE---RDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEAAREVEFIERLGQPP 269 (286)
T ss_dssp --SSEESSTCEHH---HHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHHHHHCEEEEEEE---
T ss_pred CCCCCCCCHHHHH---HHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHhCccceEeeeecccc
Confidence 3 222221 1344778888899999999988632 234455666565544443343333
No 490
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.22 E-value=6.7 Score=38.39 Aligned_cols=117 Identities=17% Similarity=0.226 Sum_probs=73.0
Q ss_pred CceeEeeecccchhhhhhhcCCCeEEEEeccCCCCc---chhHHHHhhcccchh-------hccccccCCC-CCccceee
Q 006633 477 RYRNLLDMNAYLGGFAAALVDDPLWVMNTVPVEAKI---NTLGVIYERGLIGTY-------QNWCEAMSTY-PRTYDLIH 545 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~~~v~~mnv~~~~~~~---~~l~~~~eRgl~~~~-------~~wce~~~~y-p~t~Dl~H 545 (637)
+.|.||..|+|+-|.|.-|....+-+-.|--+|+.+ ..++-|.-+...--+ .+|=.+.+.- -.|||+|-
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 457899999999999999976543333444445432 344555555421111 1222233333 36999999
Q ss_pred eccccccCCCCcCH-----HHHHHHHhhcccCCcEEEEEeCH--HHHHHHHHHHhcCCceeEE
Q 006633 546 ADSIFSLYKDRCEM-----EDVLLEMDRILRPEGSVIIRDDV--DILVKIKSITDGMEWEGRI 601 (637)
Q Consensus 546 ~~~lfs~~~~~c~~-----~~~l~e~dRiLrPgG~~i~~d~~--~~~~~~~~~~~~~~W~~~~ 601 (637)
| +.|.. ++++--+-+.|||.|..++..+. +.+++..+.++..-..+.+
T Consensus 109 a--------ADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~v~l 163 (201)
T KOG3201|consen 109 A--------ADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFTVCL 163 (201)
T ss_pred e--------ccchhHHHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeEEEe
Confidence 8 66765 37888889999999999986432 4666666665555444443
No 491
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=66.11 E-value=1.7 Score=39.59 Aligned_cols=59 Identities=19% Similarity=0.284 Sum_probs=32.0
Q ss_pred cceeeeccccc---cCCCCcCHHHHHHHHhhcccCCcEEEEEeC--------HHHHHHHHHHHhcCCcee
Q 006633 541 YDLIHADSIFS---LYKDRCEMEDVLLEMDRILRPEGSVIIRDD--------VDILVKIKSITDGMEWEG 599 (637)
Q Consensus 541 ~Dl~H~~~lfs---~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~--------~~~~~~~~~~~~~~~W~~ 599 (637)
||+|-|-+|-- +-.....+..++-.|-+.|||||.+|+--. ......+.+-.+.+.+.-
T Consensus 2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP 71 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRP 71 (110)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----G
T ss_pred ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEECh
Confidence 77777622211 111234566888899999999999999521 123344555555555543
No 492
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=65.71 E-value=12 Score=37.44 Aligned_cols=83 Identities=19% Similarity=0.254 Sum_probs=53.0
Q ss_pred ceeEeeecccchhhh--hhhcC-CCeEEEEeccCCCCcchhHHHHhhcccchhhccccccCCCCCccceeeeccccccCC
Q 006633 478 YRNLLDMNAYLGGFA--AALVD-DPLWVMNTVPVEAKINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSIFSLYK 554 (637)
Q Consensus 478 ~r~vlD~~~g~ggfa--a~l~~-~~v~~mnv~~~~~~~~~l~~~~eRgl~~~~~~wce~~~~yp~t~Dl~H~~~lfs~~~ 554 (637)
.+.|+|.|||+|.+| |+|.. .-|..+-+=|.-. ....-+.++ +-|-+---|...+.+..-+|.+-.|-=|....
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~--ei~r~N~~~-l~g~v~f~~~dv~~~~~~~dtvimNPPFG~~~ 122 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEAL--EIARANAEE-LLGDVEFVVADVSDFRGKFDTVIMNPPFGSQR 122 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHH--HHHHHHHHh-hCCceEEEEcchhhcCCccceEEECCCCcccc
Confidence 567999999999775 44443 4455554443221 233334455 33434333456677788899888888888777
Q ss_pred CCcCHHHHH
Q 006633 555 DRCEMEDVL 563 (637)
Q Consensus 555 ~~c~~~~~l 563 (637)
.+-|.++++
T Consensus 123 rhaDr~Fl~ 131 (198)
T COG2263 123 RHADRPFLL 131 (198)
T ss_pred ccCCHHHHH
Confidence 778888765
No 493
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=64.98 E-value=12 Score=36.85 Aligned_cols=53 Identities=11% Similarity=0.021 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcCCEEEEcCccccHHHHHHHHH
Q 006633 202 DAYIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRNILAVSFAPRDTHEAQVQFAL 260 (637)
Q Consensus 202 ~~~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~v~~vdisp~Dls~a~i~~A~ 260 (637)
.++++.+.++.. .+ +..|||.=||+|+.+....+.+-..+++ ++++...+.|.
T Consensus 178 ~~l~~~lI~~~t-~~--gdiVlDpF~GSGTT~~aa~~l~R~~ig~---E~~~~y~~~a~ 230 (231)
T PF01555_consen 178 VELIERLIKAST-NP--GDIVLDPFAGSGTTAVAAEELGRRYIGI---EIDEEYCEIAK 230 (231)
T ss_dssp HHHHHHHHHHHS--T--T-EEEETT-TTTHHHHHHHHTT-EEEEE---ESSHHHHHHHH
T ss_pred HHHHHHHHHhhh-cc--ceeeehhhhccChHHHHHHHcCCeEEEE---eCCHHHHHHhc
Confidence 344555555542 23 4489999999999887777766444555 45555555553
No 494
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=64.91 E-value=6.1 Score=41.04 Aligned_cols=131 Identities=15% Similarity=0.154 Sum_probs=68.3
Q ss_pred CceeEeeecccchhhhhhhcC----C-CeEEEEeccCCCCcchhHHHHhhcc---cchhh-ccccccCC------CCCcc
Q 006633 477 RYRNLLDMNAYLGGFAAALVD----D-PLWVMNTVPVEAKINTLGVIYERGL---IGTYQ-NWCEAMST------YPRTY 541 (637)
Q Consensus 477 ~~r~vlD~~~g~ggfaa~l~~----~-~v~~mnv~~~~~~~~~l~~~~eRgl---~~~~~-~wce~~~~------yp~t~ 541 (637)
..++||.+|+++|=-|-+|+. . .|+++=.-|.-.. --.+.+-+-|+ |-+.+ +..+.+.. +..+|
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~-~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYE-LGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHH-HHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 478999999988865555542 2 2444333221111 11223344454 22221 22232222 45689
Q ss_pred ceeeeccccccCCCCcCHHHHHHHHhhcccCCcEEEEEe---------CH-----HHH--------HHHHHHHhcCCcee
Q 006633 542 DLIHADSIFSLYKDRCEMEDVLLEMDRILRPEGSVIIRD---------DV-----DIL--------VKIKSITDGMEWEG 599 (637)
Q Consensus 542 Dl~H~~~lfs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d---------~~-----~~~--------~~~~~~~~~~~W~~ 599 (637)
|+|=.++= +-....++-..-+.|||||.+|+-+ .. ... +..+.+.+.=+++.
T Consensus 158 D~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~~~ 231 (247)
T PLN02589 158 DFIFVDAD------KDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEI 231 (247)
T ss_pred cEEEecCC------HHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCEEE
Confidence 99877432 2222344444458999999988731 10 111 11223455667777
Q ss_pred EEeccCCCCCCcceEEEEEec
Q 006633 600 RIADHENGPRQREKILFANKK 620 (637)
Q Consensus 600 ~~~~~e~~~~~~~~~l~~~K~ 620 (637)
.+.-. .+.+++++|.
T Consensus 232 ~llPi------gDGl~l~~k~ 246 (247)
T PLN02589 232 CMLPV------GDGITLCRRI 246 (247)
T ss_pred EEEEe------CCccEEEEEe
Confidence 76532 3678888875
No 495
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=64.89 E-value=48 Score=34.80 Aligned_cols=92 Identities=14% Similarity=0.096 Sum_probs=54.5
Q ss_pred CCEEEEECC--CCchHHHHHhhc-CCEEEEcCccccHHHHHHHHHHcCCCeEEEEeccccC-----CCCCCCeeEEEecc
Q 006633 219 IRTAIDTGC--GVASWGAYLMSR-NILAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL-----PYPSRAFDMAHCSR 290 (637)
Q Consensus 219 ~r~VLDIGC--GtG~~a~~La~~-~v~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~L-----pfpd~sFDlV~~s~ 290 (637)
+.+||=.|. |.|.++..+++. |..++.++ .+....+++++.|....+...+.... ....+.+|+|+-..
T Consensus 139 g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~---~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~ 215 (325)
T TIGR02825 139 GETVMVNAAAGAVGSVVGQIAKLKGCKVVGAA---GSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNV 215 (325)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECC
Confidence 348888884 477787778776 66655552 23445566666564332221110000 11234689998532
Q ss_pred ccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 291 CLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 291 ~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
- ...+.+..+.|++||.++..+.
T Consensus 216 --------G-~~~~~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 216 --------G-GEFSNTVIGQMKKFGRIAICGA 238 (325)
T ss_pred --------C-HHHHHHHHHHhCcCcEEEEecc
Confidence 1 2346888999999999998753
No 496
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=64.86 E-value=32 Score=36.21 Aligned_cols=91 Identities=22% Similarity=0.227 Sum_probs=51.3
Q ss_pred CCEEEEECCCC-chHHHHHhhc-CC-EEEEcCccccHHHHHHHHHHcCCCeEEEEec---cccCCCCCCCeeEEEecccc
Q 006633 219 IRTAIDTGCGV-ASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMA---SIRLPYPSRAFDMAHCSRCL 292 (637)
Q Consensus 219 ~r~VLDIGCGt-G~~a~~La~~-~v-~~vdisp~Dls~a~i~~A~erg~~~~~~~~d---~~~Lpfpd~sFDlV~~s~~L 292 (637)
+.+||-.|||. |..+..+++. ++ .++.+ +.++.+.+.+.+.+....+ ... ...+....+.+|+|+....
T Consensus 166 ~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~---~~s~~~~~~~~~~g~~~vi-~~~~~~~~~~~~~~~~vd~vld~~g- 240 (339)
T cd08232 166 GKRVLVTGAGPIGALVVAAARRAGAAEIVAT---DLADAPLAVARAMGADETV-NLARDPLAAYAADKGDFDVVFEASG- 240 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEE---CCCHHHHHHHHHcCCCEEE-cCCchhhhhhhccCCCccEEEECCC-
Confidence 45888888774 5566666654 65 44444 2233444444444432222 111 1112212235899986431
Q ss_pred ccCCcCCHHHHHHHHHhcccCCeEEEEEe
Q 006633 293 IPWGQYADGLYLIEVDRVLRPGGYWILSG 321 (637)
Q Consensus 293 ~h~~~~d~~~~L~ei~RvLKPGG~Lvls~ 321 (637)
....+.++.+.|+++|.++..+
T Consensus 241 -------~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 241 -------APAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred -------CHHHHHHHHHHHhcCCEEEEEe
Confidence 1346788999999999999765
No 497
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=64.57 E-value=21 Score=38.27 Aligned_cols=54 Identities=20% Similarity=0.332 Sum_probs=37.5
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhc--CCEEEEcCccccHHHHHHHHHHc
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSR--NILAVSFAPRDTHEAQVQFALER 262 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~--~v~~vdisp~Dls~a~i~~A~er 262 (637)
+.+.+.+.+...++. .++|.=+|.|..+..++++ ...++++ |.++.+++.+.++
T Consensus 8 ll~Evl~~L~~~~gg--iyVD~TlG~GGHS~~iL~~l~~g~vigi---D~D~~Al~~ak~~ 63 (305)
T TIGR00006 8 LLDEVVEGLNIKPDG--IYIDCTLGFGGHSKAILEQLGTGRLIGI---DRDPQAIAFAKER 63 (305)
T ss_pred hHHHHHHhcCcCCCC--EEEEeCCCChHHHHHHHHhCCCCEEEEE---cCCHHHHHHHHHH
Confidence 445566666555543 8999999999999999876 3455555 5556666666554
No 498
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=64.44 E-value=29 Score=37.52 Aligned_cols=91 Identities=19% Similarity=0.158 Sum_probs=52.3
Q ss_pred CEEEEECCC-CchHHHHHhhc-CC-EEEEcCccccHHHHHHHHHHcCCCeEEEEeccccC-----CCCCCCeeEEEeccc
Q 006633 220 RTAIDTGCG-VASWGAYLMSR-NI-LAVSFAPRDTHEAQVQFALERGVPALIGVMASIRL-----PYPSRAFDMAHCSRC 291 (637)
Q Consensus 220 r~VLDIGCG-tG~~a~~La~~-~v-~~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~L-----pfpd~sFDlV~~s~~ 291 (637)
.+||=+|+| .|.++..+++. +. .++.+ +.++...+++++.+....+.. ....+ ....+.+|+|+-.-
T Consensus 193 ~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~---~~~~~r~~~a~~~Ga~~~i~~-~~~~~~~~i~~~~~~g~d~vid~~- 267 (371)
T cd08281 193 QSVAVVGLGGVGLSALLGAVAAGASQVVAV---DLNEDKLALARELGATATVNA-GDPNAVEQVRELTGGGVDYAFEMA- 267 (371)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCcEEEE---cCCHHHHHHHHHcCCceEeCC-CchhHHHHHHHHhCCCCCEEEECC-
Confidence 378878876 35556666654 55 34444 445566667766664322211 11110 01123589988532
Q ss_pred cccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 292 LIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 292 L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
-....+....+.|++||.+++.+.
T Consensus 268 -------G~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 268 -------GSVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred -------CChHHHHHHHHHHhcCCEEEEEcc
Confidence 112467788899999999998753
No 499
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=63.77 E-value=34 Score=36.73 Aligned_cols=92 Identities=13% Similarity=0.064 Sum_probs=52.7
Q ss_pred CCEEEEECCC-CchHHHHHhhc-CCE-EEEcCccccHHHHHHHHHHcCCCeEEEEeccccC-----C-CCCCCeeEEEec
Q 006633 219 IRTAIDTGCG-VASWGAYLMSR-NIL-AVSFAPRDTHEAQVQFALERGVPALIGVMASIRL-----P-YPSRAFDMAHCS 289 (637)
Q Consensus 219 ~r~VLDIGCG-tG~~a~~La~~-~v~-~vdisp~Dls~a~i~~A~erg~~~~~~~~d~~~L-----p-fpd~sFDlV~~s 289 (637)
+.+||=.|+| .|..+..+++. +.. ++.+ +.+....+++++.+....+. ...... . .....+|+|+-.
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~---~~~~~~~~~~~~~Ga~~~i~-~~~~~~~~~i~~~~~~~g~d~vid~ 252 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAV---DIDDRKLEWAREFGATHTVN-SSGTDPVEAIRALTGGFGADVVIDA 252 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEE---cCCHHHHHHHHHcCCceEEc-CCCcCHHHHHHHHhCCCCCCEEEEC
Confidence 3488888875 24555666664 553 4444 33455666776666432221 111110 0 122358988843
Q ss_pred cccccCCcCCHHHHHHHHHhcccCCeEEEEEeC
Q 006633 290 RCLIPWGQYADGLYLIEVDRVLRPGGYWILSGP 322 (637)
Q Consensus 290 ~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~p 322 (637)
-. ....+.+..+.||+||.+++.+.
T Consensus 253 ~g--------~~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 253 VG--------RPETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CC--------CHHHHHHHHHHhccCCEEEEECC
Confidence 21 12367778899999999998864
No 500
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=63.11 E-value=1.3e+02 Score=30.97 Aligned_cols=130 Identities=14% Similarity=0.071 Sum_probs=75.6
Q ss_pred HHHHHHHHhcccCCCCCEEEEECCCCchHHHHHhhcC----CEEEEcCccccHHHHHHHHHHcCC-CeEEEEeccccCCC
Q 006633 204 YIDDIGKLINLKDGSIRTAIDTGCGVASWGAYLMSRN----ILAVSFAPRDTHEAQVQFALERGV-PALIGVMASIRLPY 278 (637)
Q Consensus 204 ~i~~L~~lL~~~~g~~r~VLDIGCGtG~~a~~La~~~----v~~vdisp~Dls~a~i~~A~erg~-~~~~~~~d~~~Lpf 278 (637)
.+..++++++. +. ++.||||--|.+..+|.+.+ +++.++.+.-+..+..++...+.. .+....+|. -.++
T Consensus 6 RL~~va~~V~~--~~--~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg-l~~l 80 (226)
T COG2384 6 RLTTVANLVKQ--GA--RIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG-LAVL 80 (226)
T ss_pred HHHHHHHHHHc--CC--ceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC-cccc
Confidence 45566666643 22 59999999999999999874 456666665555444333332222 234444444 2233
Q ss_pred C-CCCeeEEEeccccccCCcCCHHHHHHHHHhcccCCeEEEEEeCCCCccccccCCCCchhhhHHhHhhHHHHHHHhcee
Q 006633 279 P-SRAFDMAHCSRCLIPWGQYADGLYLIEVDRVLRPGGYWILSGPPVNWESHWKGWNRTTEDLKSEQNGIETIARSLCWK 357 (637)
Q Consensus 279 p-d~sFDlV~~s~~L~h~~~~d~~~~L~ei~RvLKPGG~Lvls~pp~~w~~~~~~w~~t~e~l~~~~~~ie~la~~l~w~ 357 (637)
. +..+|+|+...+-- . -...+|++-...|+-==.|++- |.. . -..++.......|.
T Consensus 81 ~~~d~~d~ivIAGMGG--~--lI~~ILee~~~~l~~~~rlILQ-Pn~-----------~-------~~~LR~~L~~~~~~ 137 (226)
T COG2384 81 ELEDEIDVIVIAGMGG--T--LIREILEEGKEKLKGVERLILQ-PNI-----------H-------TYELREWLSANSYE 137 (226)
T ss_pred CccCCcCEEEEeCCcH--H--HHHHHHHHhhhhhcCcceEEEC-CCC-----------C-------HHHHHHHHHhCCce
Confidence 3 44799998765331 1 2345666666777644455553 211 1 12366677788887
Q ss_pred eecc
Q 006633 358 KLIQ 361 (637)
Q Consensus 358 ~v~~ 361 (637)
.+.+
T Consensus 138 I~~E 141 (226)
T COG2384 138 IKAE 141 (226)
T ss_pred eeee
Confidence 7654
Done!