BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006634
         (637 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QV2|A Chain A, Structure Analysis Of Entamoeba Histolytica
           Methyltransferase Ehmeth
          Length = 327

 Score = 32.0 bits (71), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 7/79 (8%)

Query: 497 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGV-ISIETSETNRRILKRWWESSGQTG 555
           L SM    + ++  FSGIGG   +  R  I +    I  + +E   +I  + ++      
Sbjct: 3   LGSMQQKQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFK------ 56

Query: 556 ELVQIEDIQALTTKKFESL 574
           E VQ++++ +++ K+ ESL
Sbjct: 57  EEVQVKNLDSISIKQIESL 75


>pdb|3J21|T Chain T, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
           Revealed By Cryo-em: Implications For Evolution Of
           Eukaryotic Ribosomes (50s Ribosomal Proteins)
          Length = 86

 Score = 30.0 bits (66), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 152 ITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQI----FLDTPRSRSYDTVKVK 207
           +T + + +   EN+++  +++  +K  I    ++IF+ ++     L TPR      VK+K
Sbjct: 12  VTEKAISLIEKENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLK 71

Query: 208 TEYCSPDVVSQ 218
            EY + +V ++
Sbjct: 72  PEYSASEVAAR 82


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.132    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,615,773
Number of Sequences: 62578
Number of extensions: 762916
Number of successful extensions: 1843
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1839
Number of HSP's gapped (non-prelim): 5
length of query: 637
length of database: 14,973,337
effective HSP length: 105
effective length of query: 532
effective length of database: 8,402,647
effective search space: 4470208204
effective search space used: 4470208204
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 55 (25.8 bits)