BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006634
(637 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M548|DRM2_ARATH DNA (cytosine-5)-methyltransferase DRM2 OS=Arabidopsis thaliana
GN=DRM2 PE=1 SV=1
Length = 626
Score = 297 bits (760), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/339 (43%), Positives = 205/339 (60%), Gaps = 13/339 (3%)
Query: 301 RSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLP 360
RS+ ++ PP+F+Y NV W +S L+ + PEFV+S+YF +R+ GY+HNLP
Sbjct: 297 RSLPELARGPPFFYYENVALTPKGVWETISRHLFEIPPEFVDSKYFCVAARKRGYIHNLP 356
Query: 361 TTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSR 420
NRF I P P TI DA P +K+WWP WD R L+CI + T G +QL R L
Sbjct: 357 INNRFQIQPPPKYTIHDAFPLSKRWWPEWDKRTKLNCILTCT-GSAQLTNRIRVALEPYN 415
Query: 421 GVLSSQQ--QRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARL 478
+ QR ++ + +K NLVWVG K P++P+ +E ILG+P NHT+ G S T R
Sbjct: 416 EEPEPPKHVQRYVIDQCKKWNLVWVGKNKAAPLEPDEMESILGFPKNHTRGGGMSRTERF 475
Query: 479 ESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSE 538
+SL + FQ DT+ YHLSVLK +FP G+ +LS+F+GIGG EV LHRL IK+K V+S+E S+
Sbjct: 476 KSLGNSFQVDTVAYHLSVLKPIFPHGINVLSLFTGIGGGEVALHRLQIKMKLVVSVEISK 535
Query: 539 TNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQ 598
NR ILK +WE + QTGEL++ DIQ LT E L+ K G D VI + + +
Sbjct: 536 VNRNILKDFWEQTNQTGELIEFSDIQHLTNDTIEGLMEKYGGFDLVIGGSPCNNLAGGNR 595
Query: 599 ISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR 637
+S ++ E D SL++E+ R+++ VR+ R
Sbjct: 596 VS-----RVGLEGDQS-----SLFFEYCRILEVVRARMR 624
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 1 MGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQE--SNSQSSDSLDTLFGDKDANSPPE 58
MGF V K I+E G+DN++ + L+ ++ + + D +D D D N
Sbjct: 121 MGFDEEKVVKAIQEHGEDNMEAIANALLSCPEAKKLPAAVEEEDGIDWSSSDDDTNYTDM 180
Query: 59 ISTMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 118
+++ +++PN + G I SL+ M FS E A+++ G++ + EL DF+ AAQ
Sbjct: 181 LNS--DDEKDPNSNENGSKIR---SLVKMGFSELEASLAVERCGENVDIAELTDFLCAAQ 235
Query: 119 ISENF 123
++ F
Sbjct: 236 MAREF 240
Score = 40.0 bits (92), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 83/203 (40%), Gaps = 49/203 (24%)
Query: 1 MGFSPSLVDKVIEEKGQD-NVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEI 59
MGF ++ + I+E G + ++++T+ +Y++ E+ S S ++D
Sbjct: 71 MGFPVEMISRAIKETGPNVETSVIIDTISKYSSDCEAGSSKSKAID-------------- 116
Query: 60 STMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKD---APVYELVDFITA 116
L M F +V A+ + G+D A L+ A
Sbjct: 117 -----------------------HFLAMGFDEEKVVKAIQEHGEDNMEAIANALLSCPEA 153
Query: 117 AQISENFEKE-------TDDAPHDNDGTN-EDKSDETLYGTMEITLQLLEMGFSENQVSL 168
++ E+E +DD + D N +D+ D L++MGFSE + SL
Sbjct: 154 KKLPAAVEEEDGIDWSSSDDDTNYTDMLNSDDEKDPNSNENGSKIRSLVKMGFSELEASL 213
Query: 169 AIEKFGSKTPISELADKIFSGQI 191
A+E+ G I+EL D + + Q+
Sbjct: 214 AVERCGENVDIAELTDFLCAAQM 236
>sp|Q9LXE5|DRM1_ARATH DNA (cytosine-5)-methyltransferase DRM1 OS=Arabidopsis thaliana
GN=DRM1 PE=4 SV=2
Length = 624
Score = 286 bits (733), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 199/640 (31%), Positives = 316/640 (49%), Gaps = 91/640 (14%)
Query: 1 MGFSPSLVDKVIEEKGQDNVD--LLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPE 58
MGFS ++ + IEE N++ ++LETL Y+A E++S S ++ A PE
Sbjct: 69 MGFSTQMIARAIEETAGANMEPMMILETLFNYSASTEASSSKSKVINHFI----AMGFPE 124
Query: 59 ISTMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 118
+++ +E D G E +LL + EVD KL + + ++
Sbjct: 125 -EHVIKAMQEHGDEDVG---EITNALL----TYAEVD----KLRESEDMNININDDDDDN 172
Query: 119 ISENFEKETDDAPHD-NDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKT 177
+ + +DD + N+ +NED+ I L++MG+ ++AIE+ G
Sbjct: 173 L---YSLSSDDEEDELNNSSNEDR----------ILQALIKMGYLREDAAIAIERCGEDA 219
Query: 178 PISELADKIFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEY 237
+ E+ D I + Q+ +R +D + Y PD + MN ++ R
Sbjct: 220 SMEEVVDFICAAQM------ARQFDEI-----YAEPD---KKELMNNNKKRR-------- 257
Query: 238 FDDFSNSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSWEEKVKPNSSRYGMQQAFNS 297
+ E P++ + D S V PN M +
Sbjct: 258 --------------TYTET-----PRKPNTDQLISLPKEMIGFGV-PNHPGLMMHRPV-- 295
Query: 298 NPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLH 357
I + PP+F+Y NV W K+S LY + PEFV+S++F A +R+ GY+H
Sbjct: 296 ----PIPDIARGPPFFYYENVAMTPKGVWAKISSHLYDIVPEFVDSKHFCAAARKRGYIH 351
Query: 358 NLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLR 417
NLP NRF I P TIQ+A P TK+WWPSWD R L+C+ + + S+L E+ + L
Sbjct: 352 NLPIQNRFQIQPPQHNTIQEAFPLTKRWWPSWDGRTKLNCLLTCIAS-SRLTEKIREALE 410
Query: 418 DSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTAR 477
G Q+ +++ +K NLVWVG KL P+D + +E +LG+P +HT+ G S T R
Sbjct: 411 RYDGETPLDVQKWVMYECKKWNLVWVGKNKLAPLDADEMEKLLGFPRDHTRGGGISTTDR 470
Query: 478 LESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETS 537
+SL + FQ DT+ YHLSVLK +FP G+ +LS+F+GIGG EV LHRL IK+ V+S+E S
Sbjct: 471 YKSLGNSFQVDTVAYHLSVLKPLFPNGINVLSLFTGIGGGEVALHRLQIKMNVVVSVEIS 530
Query: 538 ETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSK 597
+ NR IL+ +WE + Q G L + +D+Q L E L+ + G D VI + P +
Sbjct: 531 DANRNILRSFWEQTNQKGILREFKDVQKLDDNTIERLMDEYGGFDLVIGGS-----PCNN 585
Query: 598 QISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR 637
++ ++ ++ SL++++ R+++ VR R
Sbjct: 586 LAGGNRHHRVGLGGEH-----SSLFFDYCRILEAVRRKAR 620
>sp|Q5ZKH8|ODR4_CHICK Protein odr-4 homolog OS=Gallus gallus GN=ODR4 PE=2 SV=1
Length = 446
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 442 WVGAYKLGPVDPEHIELILGY--PSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS 499
+V +G P+ +I P Q GN+ ++L+S+ + T H S +
Sbjct: 25 YVTGLLIGQCSPQRDYIIRAARTPPKEEQKEGNTSPSKLDSIDEEWFT----AHASQISR 80
Query: 500 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILK 545
M PGGL +LSVF I E++ K + SIE S T RR+ K
Sbjct: 81 MLPGGLLVLSVFI-IATPELSKDCQNTLRKLIFSIEKSLTKRRLWK 125
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 238,729,013
Number of Sequences: 539616
Number of extensions: 10187223
Number of successful extensions: 21530
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 21481
Number of HSP's gapped (non-prelim): 80
length of query: 637
length of database: 191,569,459
effective HSP length: 124
effective length of query: 513
effective length of database: 124,657,075
effective search space: 63949079475
effective search space used: 63949079475
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)