Query 006634
Match_columns 637
No_of_seqs 235 out of 1013
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 12:16:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00145 DNA_methylase: C-5 cy 99.9 2.3E-24 5.1E-29 219.5 7.7 105 505-636 1-105 (335)
2 COG0270 Dcm Site-specific DNA 99.9 3.7E-24 8.1E-29 225.2 8.9 109 503-635 2-110 (328)
3 PRK10458 DNA cytosine methylas 99.9 4.4E-22 9.6E-27 218.8 10.6 126 503-636 87-222 (467)
4 cd00315 Cyt_C5_DNA_methylase C 99.9 8.3E-22 1.8E-26 202.9 8.6 106 505-636 1-106 (275)
5 TIGR00675 dcm DNA-methyltransf 99.9 8.4E-22 1.8E-26 206.5 8.3 103 507-636 1-103 (315)
6 KOG0919 C-5 cytosine-specific 99.3 6.6E-12 1.4E-16 127.6 6.9 111 503-635 2-112 (338)
7 cd00315 Cyt_C5_DNA_methylase C 99.2 8.8E-12 1.9E-16 128.8 4.1 157 308-497 102-273 (275)
8 PRK10458 DNA cytosine methylas 98.5 5.7E-08 1.2E-12 108.0 4.9 57 445-501 398-456 (467)
9 PF00145 DNA_methylase: C-5 cy 98.4 9.5E-08 2.1E-12 97.8 1.5 55 442-498 280-334 (335)
10 PF13659 Methyltransf_26: Meth 97.8 5.6E-05 1.2E-09 66.7 7.3 83 504-594 1-84 (117)
11 TIGR00675 dcm DNA-methyltransf 97.8 4.6E-06 1E-10 88.2 0.3 178 307-491 98-309 (315)
12 COG0270 Dcm Site-specific DNA 97.5 5.6E-05 1.2E-09 80.4 2.3 177 307-499 106-322 (328)
13 PF03602 Cons_hypoth95: Conser 97.4 0.00023 5E-09 70.2 5.5 82 503-590 42-124 (183)
14 TIGR00095 RNA methyltransferas 97.2 0.00074 1.6E-08 66.8 7.1 83 503-591 49-132 (189)
15 COG2520 Predicted methyltransf 97.2 0.00059 1.3E-08 73.7 6.1 95 485-590 171-266 (341)
16 PF02475 Met_10: Met-10+ like- 97.1 0.00094 2E-08 67.1 6.8 80 501-590 99-179 (200)
17 TIGR03704 PrmC_rel_meth putati 97.1 0.00092 2E-08 68.8 6.5 82 504-595 87-168 (251)
18 PRK15128 23S rRNA m(5)C1962 me 97.0 0.0014 3E-08 72.0 7.7 82 503-590 220-303 (396)
19 PRK10909 rsmD 16S rRNA m(2)G96 97.0 0.0017 3.7E-08 65.0 7.7 77 504-589 54-130 (199)
20 PF09445 Methyltransf_15: RNA 97.0 0.001 2.2E-08 65.1 4.9 81 506-595 2-84 (163)
21 PHA03412 putative methyltransf 96.9 0.0016 3.4E-08 67.4 5.7 122 449-594 5-128 (241)
22 PF13847 Methyltransf_31: Meth 96.8 0.0032 6.9E-08 58.9 6.7 84 503-594 3-87 (152)
23 TIGR01177 conserved hypothetic 96.7 0.01 2.2E-07 63.1 10.3 82 502-594 181-262 (329)
24 TIGR00446 nop2p NOL1/NOP2/sun 96.6 0.0046 1E-07 63.9 7.1 85 503-595 71-155 (264)
25 TIGR02085 meth_trns_rumB 23S r 96.5 0.0033 7.2E-08 68.3 5.6 76 504-589 234-309 (374)
26 PRK03522 rumB 23S rRNA methylu 96.5 0.0049 1.1E-07 65.2 6.5 81 504-594 174-254 (315)
27 PF05175 MTS: Methyltransferas 96.5 0.0082 1.8E-07 57.9 7.4 77 503-589 31-107 (170)
28 KOG0919 C-5 cytosine-specific 96.5 0.0022 4.8E-08 66.5 3.4 52 446-497 285-336 (338)
29 PRK09328 N5-glutamine S-adenos 96.4 0.012 2.5E-07 60.0 8.4 82 503-594 108-189 (275)
30 PHA03411 putative methyltransf 96.3 0.0063 1.4E-07 64.2 6.2 96 482-595 46-141 (279)
31 smart00165 UBA Ubiquitin assoc 96.3 0.0065 1.4E-07 44.6 4.5 36 78-115 2-37 (37)
32 TIGR00479 rumA 23S rRNA (uraci 96.2 0.013 2.9E-07 64.4 8.1 84 503-593 292-375 (431)
33 COG0742 N6-adenine-specific me 96.2 0.014 3E-07 58.4 7.5 92 493-591 33-125 (187)
34 PRK05031 tRNA (uracil-5-)-meth 96.2 0.0077 1.7E-07 65.3 6.0 82 505-590 208-298 (362)
35 TIGR00537 hemK_rel_arch HemK-r 96.2 0.017 3.7E-07 55.6 7.8 77 504-594 20-96 (179)
36 smart00650 rADc Ribosomal RNA 96.2 0.012 2.6E-07 56.4 6.6 76 503-591 13-88 (169)
37 PRK14904 16S rRNA methyltransf 96.2 0.011 2.3E-07 65.7 7.1 84 503-595 250-333 (445)
38 PRK11783 rlmL 23S rRNA m(2)G24 96.1 0.014 2.9E-07 68.6 8.1 83 503-594 538-622 (702)
39 PRK10901 16S rRNA methyltransf 96.1 0.015 3.2E-07 64.3 7.9 84 503-594 244-327 (427)
40 PF00627 UBA: UBA/TS-N domain; 96.1 0.012 2.6E-07 43.6 4.7 36 77-114 2-37 (37)
41 PRK13168 rumA 23S rRNA m(5)U19 96.0 0.014 3.1E-07 64.6 7.3 85 503-594 297-381 (443)
42 cd00194 UBA Ubiquitin Associat 95.9 0.017 3.6E-07 42.6 5.0 36 78-115 2-37 (38)
43 COG2263 Predicted RNA methylas 95.9 0.022 4.7E-07 57.3 7.0 72 503-589 45-117 (198)
44 PRK14902 16S rRNA methyltransf 95.9 0.019 4.2E-07 63.6 7.3 85 503-595 250-335 (444)
45 cd02440 AdoMet_MTases S-adenos 95.7 0.027 5.9E-07 45.9 5.9 79 506-593 1-79 (107)
46 PRK14967 putative methyltransf 95.6 0.023 5.1E-07 56.9 6.2 78 503-592 36-113 (223)
47 PRK14901 16S rRNA methyltransf 95.6 0.027 5.9E-07 62.3 7.2 89 503-595 252-340 (434)
48 PRK11805 N5-glutamine S-adenos 95.6 0.033 7.1E-07 59.2 7.5 80 505-594 135-215 (307)
49 COG2265 TrmA SAM-dependent met 95.5 0.016 3.4E-07 64.7 5.0 77 504-589 294-371 (432)
50 PF10672 Methyltrans_SAM: S-ad 95.5 0.056 1.2E-06 57.4 8.7 83 503-594 123-207 (286)
51 PF05958 tRNA_U5-meth_tr: tRNA 95.4 0.019 4.2E-07 62.0 5.2 81 506-589 199-287 (352)
52 TIGR03534 RF_mod_PrmC protein- 95.4 0.035 7.5E-07 55.5 6.6 82 503-594 87-168 (251)
53 PRK04338 N(2),N(2)-dimethylgua 95.3 0.034 7.3E-07 61.1 6.5 76 504-589 58-134 (382)
54 PRK14903 16S rRNA methyltransf 95.3 0.043 9.3E-07 61.0 7.3 85 503-595 237-322 (431)
55 smart00165 UBA Ubiquitin assoc 95.2 0.027 5.8E-07 41.3 3.7 34 151-186 3-36 (37)
56 TIGR02143 trmA_only tRNA (urac 95.1 0.033 7.1E-07 60.3 5.8 85 505-592 199-291 (353)
57 COG1092 Predicted SAM-dependen 95.1 0.096 2.1E-06 58.0 9.4 106 504-635 218-325 (393)
58 PRK14896 ksgA 16S ribosomal RN 95.1 0.046 1E-06 56.3 6.5 96 479-591 5-102 (258)
59 TIGR02987 met_A_Alw26 type II 94.9 0.028 6.1E-07 63.5 4.8 88 503-594 31-126 (524)
60 TIGR03533 L3_gln_methyl protei 94.9 0.066 1.4E-06 56.2 7.2 81 504-594 122-203 (284)
61 PF00627 UBA: UBA/TS-N domain; 94.6 0.045 9.7E-07 40.6 3.7 26 151-176 4-29 (37)
62 PRK00274 ksgA 16S ribosomal RN 94.6 0.083 1.8E-06 55.0 6.8 94 480-589 19-114 (272)
63 TIGR00563 rsmB ribosomal RNA s 94.3 0.12 2.6E-06 57.1 7.8 84 503-595 238-324 (426)
64 TIGR00755 ksgA dimethyladenosi 94.3 0.08 1.7E-06 54.2 6.0 75 503-589 29-103 (253)
65 TIGR02021 BchM-ChlM magnesium 94.3 0.13 2.9E-06 51.0 7.4 55 492-549 44-98 (219)
66 COG4123 Predicted O-methyltran 94.3 0.083 1.8E-06 55.1 6.0 102 482-593 26-128 (248)
67 TIGR00080 pimt protein-L-isoas 94.2 0.16 3.4E-06 50.7 7.8 84 503-594 77-160 (215)
68 PF01170 UPF0020: Putative RNA 94.1 0.046 1E-06 53.6 3.7 79 503-589 28-115 (179)
69 TIGR00536 hemK_fam HemK family 94.1 0.11 2.3E-06 54.4 6.6 80 505-594 116-196 (284)
70 PRK14968 putative methyltransf 94.0 0.17 3.6E-06 48.2 7.0 78 503-592 23-102 (188)
71 TIGR00308 TRM1 tRNA(guanine-26 93.9 0.093 2E-06 57.6 5.9 77 504-589 45-123 (374)
72 cd00194 UBA Ubiquitin Associat 93.9 0.085 1.8E-06 38.8 3.8 35 151-187 3-37 (38)
73 COG2890 HemK Methylase of poly 93.8 0.096 2.1E-06 55.2 5.6 78 506-594 113-190 (280)
74 PRK09489 rsmC 16S ribosomal RN 93.8 0.13 2.8E-06 55.6 6.7 98 479-590 170-271 (342)
75 PF12847 Methyltransf_18: Meth 93.7 0.19 4.1E-06 43.8 6.3 74 504-588 2-78 (112)
76 TIGR02469 CbiT precorrin-6Y C5 93.5 0.26 5.6E-06 43.3 6.9 76 503-586 19-94 (124)
77 TIGR00406 prmA ribosomal prote 93.4 0.17 3.6E-06 53.2 6.5 46 503-550 159-204 (288)
78 PF02384 N6_Mtase: N-6 DNA Met 93.4 0.074 1.6E-06 55.6 3.9 107 479-593 23-138 (311)
79 TIGR02752 MenG_heptapren 2-hep 93.1 0.33 7.1E-06 48.3 7.8 82 503-593 45-127 (231)
80 TIGR00138 gidB 16S rRNA methyl 93.1 0.2 4.3E-06 49.3 6.1 75 504-588 43-117 (181)
81 KOG3420 Predicted RNA methylas 92.9 0.15 3.3E-06 49.9 4.8 76 503-589 48-123 (185)
82 PTZ00338 dimethyladenosine tra 92.9 0.19 4.2E-06 53.3 6.0 98 479-591 12-112 (294)
83 PRK11207 tellurite resistance 92.6 0.47 1E-05 46.9 8.0 43 504-549 31-73 (197)
84 PRK00312 pcm protein-L-isoaspa 92.5 0.37 8.1E-06 47.7 7.2 80 503-593 78-157 (212)
85 PRK00517 prmA ribosomal protei 92.5 0.23 4.9E-06 50.9 5.8 52 496-549 112-163 (250)
86 PRK07402 precorrin-6B methylas 92.4 0.45 9.7E-06 46.6 7.6 47 503-550 40-86 (196)
87 PRK14966 unknown domain/N5-glu 92.4 0.3 6.4E-06 54.7 6.9 78 504-590 252-329 (423)
88 KOG2904 Predicted methyltransf 92.4 0.21 4.6E-06 53.1 5.4 83 505-591 150-233 (328)
89 PRK07580 Mg-protoporphyrin IX 92.1 0.38 8.2E-06 47.5 6.6 45 503-550 63-107 (230)
90 PRK08287 cobalt-precorrin-6Y C 92.1 0.5 1.1E-05 45.9 7.3 47 503-550 31-77 (187)
91 PF07499 RuvA_C: RuvA, C-termi 91.8 0.31 6.8E-06 38.2 4.5 37 77-113 3-41 (47)
92 PLN02396 hexaprenyldihydroxybe 91.8 0.44 9.6E-06 51.3 7.3 43 503-548 131-173 (322)
93 COG5207 UBP14 Isopeptidase T [ 91.5 0.93 2E-05 51.6 9.5 82 77-172 558-644 (749)
94 COG2264 PrmA Ribosomal protein 91.4 0.34 7.4E-06 52.0 5.7 55 493-549 152-206 (300)
95 PF09288 UBA_3: Fungal ubiquit 91.3 0.27 5.8E-06 40.4 3.8 29 77-105 9-37 (55)
96 PRK00377 cbiT cobalt-precorrin 91.0 0.65 1.4E-05 45.8 6.9 78 503-588 40-119 (198)
97 PRK15001 SAM-dependent 23S rib 91.0 0.41 8.8E-06 52.8 6.0 75 505-590 230-308 (378)
98 KOG2730 Methylase [General fun 90.9 0.33 7.2E-06 50.3 4.8 103 486-595 77-180 (263)
99 PLN02585 magnesium protoporphy 90.8 0.51 1.1E-05 50.7 6.5 43 503-548 144-186 (315)
100 PRK01544 bifunctional N5-gluta 90.8 0.52 1.1E-05 53.7 6.8 81 504-594 139-220 (506)
101 PRK11036 putative S-adenosyl-L 90.5 0.56 1.2E-05 47.9 6.2 78 502-589 43-121 (255)
102 COG2227 UbiG 2-polyprenyl-3-me 90.5 0.58 1.3E-05 48.8 6.2 72 503-586 59-130 (243)
103 PF00398 RrnaAD: Ribosomal RNA 90.4 0.34 7.4E-06 50.1 4.6 98 480-589 7-106 (262)
104 TIGR00478 tly hemolysin TlyA f 90.3 0.51 1.1E-05 48.5 5.8 75 503-587 75-150 (228)
105 PRK00107 gidB 16S rRNA methylt 90.1 0.68 1.5E-05 46.0 6.3 79 499-587 41-119 (187)
106 KOG0944 Ubiquitin-specific pro 89.8 1.5 3.2E-05 51.4 9.3 101 77-189 571-673 (763)
107 KOG1227 Putative methyltransfe 89.7 0.31 6.8E-06 52.4 3.7 54 493-549 185-239 (351)
108 PRK00121 trmB tRNA (guanine-N( 89.6 0.74 1.6E-05 45.8 6.1 81 503-590 40-121 (202)
109 PRK11188 rrmJ 23S rRNA methylt 89.0 1.1 2.3E-05 45.2 6.7 73 503-587 51-124 (209)
110 PRK00117 recX recombination re 88.7 11 0.00024 36.0 13.2 77 78-176 79-156 (157)
111 PF06325 PrmA: Ribosomal prote 88.7 0.71 1.5E-05 49.3 5.5 54 495-550 153-206 (295)
112 PRK13944 protein-L-isoaspartat 88.6 1.6 3.4E-05 43.5 7.6 82 503-593 72-155 (205)
113 PTZ00098 phosphoethanolamine N 88.4 1.6 3.5E-05 45.3 7.8 72 454-547 22-94 (263)
114 COG0116 Predicted N6-adenine-s 88.4 2 4.3E-05 47.6 8.8 109 497-632 186-333 (381)
115 PLN02244 tocopherol O-methyltr 88.4 1.3 2.9E-05 47.6 7.4 73 503-586 118-192 (340)
116 PRK13942 protein-L-isoaspartat 88.3 1.5 3.2E-05 44.0 7.2 88 490-587 65-152 (212)
117 PF13649 Methyltransf_25: Meth 88.2 1.1 2.4E-05 38.9 5.5 70 507-586 1-73 (101)
118 PRK05134 bifunctional 3-demeth 87.9 2.1 4.6E-05 42.7 8.1 44 503-549 48-91 (233)
119 PRK10742 putative methyltransf 87.7 2 4.3E-05 45.2 7.9 84 505-591 90-175 (250)
120 PLN02781 Probable caffeoyl-CoA 87.4 0.92 2E-05 46.4 5.3 93 490-588 56-152 (234)
121 PRK11933 yebU rRNA (cytosine-C 87.3 1.3 2.9E-05 50.2 6.8 85 503-595 113-198 (470)
122 TIGR02072 BioC biotin biosynth 87.1 1 2.2E-05 44.2 5.1 77 504-593 35-111 (240)
123 PRK10258 biotin biosynthesis p 87.0 1.5 3.3E-05 44.4 6.5 86 486-589 27-112 (251)
124 PRK12335 tellurite resistance 87.0 1.4 3.1E-05 46.0 6.5 42 506-550 123-164 (287)
125 TIGR03840 TMPT_Se_Te thiopurin 86.8 1.3 2.8E-05 44.9 5.8 40 502-544 33-72 (213)
126 PRK11783 rlmL 23S rRNA m(2)G24 85.7 2 4.3E-05 50.9 7.5 54 530-589 258-312 (702)
127 PF02005 TRM: N2,N2-dimethylgu 85.7 0.96 2.1E-05 49.9 4.5 62 485-549 32-95 (377)
128 PRK05785 hypothetical protein; 85.6 1.8 3.9E-05 43.9 6.2 73 503-593 51-123 (226)
129 TIGR01934 MenG_MenH_UbiE ubiqu 85.6 2.4 5.1E-05 41.3 6.8 74 503-586 39-112 (223)
130 PF01189 Nol1_Nop2_Fmu: NOL1/N 85.2 1.8 3.8E-05 45.7 6.1 86 504-595 86-171 (283)
131 COG1041 Predicted DNA modifica 85.1 2.1 4.6E-05 46.8 6.8 77 503-590 197-274 (347)
132 PF02086 MethyltransfD12: D12 85.1 0.63 1.4E-05 46.9 2.7 53 494-549 9-63 (260)
133 KOG0944 Ubiquitin-specific pro 85.1 2.9 6.3E-05 49.1 8.1 95 1-119 581-675 (763)
134 TIGR01983 UbiG ubiquinone bios 85.1 2.2 4.7E-05 42.1 6.4 43 503-548 45-87 (224)
135 PRK13943 protein-L-isoaspartat 84.6 2.7 5.9E-05 45.4 7.3 77 503-587 80-156 (322)
136 PLN02233 ubiquinone biosynthes 84.4 3.3 7.1E-05 43.0 7.6 77 503-588 73-153 (261)
137 PRK01683 trans-aconitate 2-met 84.1 2.2 4.7E-05 43.3 6.1 74 503-591 31-104 (258)
138 PF01555 N6_N4_Mtase: DNA meth 84.0 1.2 2.6E-05 43.1 4.0 39 503-544 191-229 (231)
139 PRK00216 ubiE ubiquinone/menaq 83.9 3.2 6.8E-05 40.8 6.9 75 504-586 52-127 (239)
140 TIGR00477 tehB tellurite resis 83.9 3.6 7.9E-05 40.6 7.3 43 504-549 31-73 (195)
141 PRK13255 thiopurine S-methyltr 83.5 2.6 5.6E-05 42.9 6.2 40 502-544 36-75 (218)
142 PF07499 RuvA_C: RuvA, C-termi 83.4 1.6 3.4E-05 34.2 3.6 33 152-184 6-40 (47)
143 PRK14135 recX recombination re 83.0 13 0.00029 38.3 11.4 82 77-176 178-262 (263)
144 PRK00811 spermidine synthase; 83.0 3.4 7.4E-05 43.5 7.1 78 502-588 75-158 (283)
145 PRK11727 23S rRNA mA1618 methy 82.5 3.9 8.5E-05 44.3 7.4 81 503-590 114-199 (321)
146 COG2226 UbiE Methylase involve 82.0 4 8.6E-05 42.6 7.0 83 503-594 51-133 (238)
147 PLN02672 methionine S-methyltr 81.9 2.5 5.5E-05 52.5 6.4 46 504-550 119-164 (1082)
148 TIGR00091 tRNA (guanine-N(7)-) 81.8 2.4 5.3E-05 41.7 5.2 83 503-591 16-98 (194)
149 PF01209 Ubie_methyltran: ubiE 81.6 2.9 6.4E-05 42.9 5.9 77 503-588 47-124 (233)
150 TIGR00438 rrmJ cell division p 81.2 3.5 7.5E-05 40.1 6.0 74 502-588 31-106 (188)
151 PRK14135 recX recombination re 81.1 27 0.00058 36.1 12.7 82 78-179 126-208 (263)
152 TIGR00417 speE spermidine synt 80.8 4.9 0.00011 41.8 7.2 47 503-550 72-118 (270)
153 PRK08317 hypothetical protein; 80.8 5.5 0.00012 38.8 7.2 45 503-547 19-63 (241)
154 PF03848 TehB: Tellurite resis 80.6 4.3 9.2E-05 41.0 6.5 42 504-548 31-72 (192)
155 PF01728 FtsJ: FtsJ-like methy 80.6 2.5 5.4E-05 40.8 4.7 81 503-594 23-107 (181)
156 KOG2561 Adaptor protein NUB1, 80.2 2.5 5.4E-05 47.7 5.0 78 79-176 377-456 (568)
157 COG0144 Sun tRNA and rRNA cyto 80.1 6.7 0.00015 42.8 8.3 89 503-596 156-245 (355)
158 TIGR02081 metW methionine bios 79.7 2.2 4.7E-05 41.8 4.0 47 497-545 7-53 (194)
159 COG0030 KsgA Dimethyladenosine 79.7 3.8 8.3E-05 43.2 6.0 76 504-591 31-106 (259)
160 PF01135 PCMT: Protein-L-isoas 79.6 3.1 6.6E-05 42.3 5.1 98 486-593 57-154 (209)
161 PRK00117 recX recombination re 79.3 7.4 0.00016 37.2 7.4 68 2-104 89-156 (157)
162 PRK11873 arsM arsenite S-adeno 79.0 4.8 0.0001 41.3 6.5 77 502-587 76-153 (272)
163 COG2813 RsmC 16S RNA G1207 met 78.8 6.2 0.00013 42.6 7.4 73 506-589 161-233 (300)
164 COG3963 Phospholipid N-methylt 77.2 5.5 0.00012 40.1 5.9 84 502-595 47-132 (194)
165 cd04708 BAH_plantDCM_II BAH, o 77.0 0.9 2E-05 46.3 0.5 16 502-517 187-202 (202)
166 PF09288 UBA_3: Fungal ubiquit 76.8 1.9 4.1E-05 35.6 2.1 29 1-29 19-55 (55)
167 PF08241 Methyltransf_11: Meth 76.6 7 0.00015 32.2 5.7 67 508-588 1-68 (95)
168 PRK06922 hypothetical protein; 76.4 5.5 0.00012 47.2 6.6 86 497-591 413-498 (677)
169 PRK15451 tRNA cmo(5)U34 methyl 75.9 6.4 0.00014 40.3 6.3 66 501-566 54-121 (247)
170 PRK14103 trans-aconitate 2-met 75.5 5.2 0.00011 40.8 5.5 73 503-592 29-101 (255)
171 COG5207 UBP14 Isopeptidase T [ 75.4 10 0.00023 43.6 8.1 81 1-104 568-648 (749)
172 PRK06202 hypothetical protein; 74.4 7.3 0.00016 39.1 6.2 44 502-546 59-106 (232)
173 PF13489 Methyltransf_23: Meth 73.9 5 0.00011 36.7 4.5 40 501-543 20-59 (161)
174 PF05185 PRMT5: PRMT5 arginine 73.9 6.3 0.00014 44.5 6.1 72 504-585 187-263 (448)
175 PRK04148 hypothetical protein; 73.7 9.4 0.0002 36.6 6.3 66 504-586 17-83 (134)
176 TIGR03587 Pse_Me-ase pseudamin 72.9 6.6 0.00014 39.4 5.4 44 502-547 42-86 (204)
177 KOG1270 Methyltransferases [Co 72.4 6.3 0.00014 42.0 5.3 41 504-547 90-130 (282)
178 PLN02336 phosphoethanolamine N 72.0 5.9 0.00013 44.2 5.3 80 504-594 38-117 (475)
179 PF03291 Pox_MCEL: mRNA cappin 72.0 6.1 0.00013 42.9 5.3 44 503-548 62-105 (331)
180 PRK03612 spermidine synthase; 71.9 9 0.00019 43.9 6.8 81 502-590 296-383 (521)
181 PRK14600 ruvA Holliday junctio 71.5 7.3 0.00016 39.1 5.3 39 77-115 145-183 (186)
182 PRK04266 fibrillarin; Provisio 70.5 12 0.00027 38.3 6.8 78 503-588 72-149 (226)
183 PRK13699 putative methylase; P 69.4 7.5 0.00016 39.8 5.0 43 503-548 163-205 (227)
184 PF07021 MetW: Methionine bios 68.7 9.5 0.00021 38.8 5.4 77 494-586 4-81 (193)
185 PLN02476 O-methyltransferase 67.9 14 0.0003 39.4 6.8 93 491-589 107-203 (278)
186 PRK11088 rrmA 23S rRNA methylt 67.9 11 0.00024 39.0 6.0 70 504-586 86-157 (272)
187 KOG2187 tRNA uracil-5-methyltr 67.5 6.1 0.00013 45.4 4.2 58 482-542 358-419 (534)
188 PRK15068 tRNA mo(5)U34 methylt 67.2 13 0.00029 39.9 6.6 36 504-541 123-158 (322)
189 PRK13256 thiopurine S-methyltr 67.0 11 0.00023 39.0 5.6 40 503-545 43-82 (226)
190 TIGR00740 methyltransferase, p 66.2 19 0.00041 36.3 7.1 82 502-593 52-135 (239)
191 PRK11524 putative methyltransf 65.7 8.1 0.00018 40.6 4.5 41 503-546 208-248 (284)
192 PTZ00146 fibrillarin; Provisio 65.0 19 0.0004 38.9 7.0 79 502-588 131-210 (293)
193 PRK14134 recX recombination re 64.6 82 0.0018 33.6 11.7 27 77-103 182-208 (283)
194 PRK14603 ruvA Holliday junctio 64.5 14 0.0003 37.5 5.6 39 77-115 152-193 (197)
195 PF02536 mTERF: mTERF; InterP 63.8 14 0.00031 39.1 6.0 23 151-173 245-267 (345)
196 TIGR00452 methyltransferase, p 63.3 26 0.00056 37.9 7.8 37 504-542 122-158 (314)
197 PLN02366 spermidine synthase 63.1 18 0.00038 39.0 6.5 80 502-588 90-173 (308)
198 TIGR01444 fkbM_fam methyltrans 61.8 17 0.00037 33.2 5.4 44 506-550 1-44 (143)
199 COG0293 FtsJ 23S rRNA methylas 61.5 16 0.00036 37.4 5.6 71 501-585 43-116 (205)
200 KOG0820 Ribosomal RNA adenine 60.4 24 0.00051 38.2 6.7 84 498-594 53-137 (315)
201 PF05724 TPMT: Thiopurine S-me 60.1 11 0.00023 38.6 4.0 39 503-544 37-75 (218)
202 PLN02336 phosphoethanolamine N 60.1 39 0.00085 37.7 8.8 42 502-546 265-307 (475)
203 PRK00050 16S rRNA m(4)C1402 me 58.7 20 0.00043 38.6 5.9 79 504-588 20-98 (296)
204 TIGR00084 ruvA Holliday juncti 57.9 18 0.00039 36.4 5.2 40 77-116 147-188 (191)
205 TIGR00601 rad23 UV excision re 57.9 12 0.00027 41.5 4.3 41 75-117 154-194 (378)
206 PRK14606 ruvA Holliday junctio 57.3 19 0.00041 36.3 5.2 39 77-115 143-182 (188)
207 COG3897 Predicted methyltransf 57.1 9.7 0.00021 39.2 3.1 78 503-594 79-156 (218)
208 TIGR03438 probable methyltrans 56.9 26 0.00056 37.2 6.4 87 502-594 62-152 (301)
209 KOG1271 Methyltransferases [Ge 56.6 18 0.0004 37.0 4.9 80 505-594 69-150 (227)
210 smart00828 PKS_MT Methyltransf 56.1 28 0.00062 34.4 6.2 43 506-549 2-44 (224)
211 PRK14602 ruvA Holliday junctio 55.5 23 0.0005 36.0 5.5 40 77-116 155-197 (203)
212 PRK04457 spermidine synthase; 55.4 16 0.00035 38.1 4.5 76 503-586 66-142 (262)
213 PRK11705 cyclopropane fatty ac 54.7 25 0.00054 38.8 6.1 42 503-547 167-209 (383)
214 PF10294 Methyltransf_16: Puta 54.3 42 0.00091 32.7 6.9 81 503-589 45-128 (173)
215 PF02353 CMAS: Mycolic acid cy 54.3 29 0.00064 36.6 6.3 46 502-550 61-107 (273)
216 PRK14121 tRNA (guanine-N(7)-)- 53.6 27 0.00058 39.1 6.1 82 503-591 122-203 (390)
217 PRK14136 recX recombination re 53.4 32 0.00069 37.4 6.4 28 77-104 278-305 (309)
218 KOG2561 Adaptor protein NUB1, 52.9 34 0.00074 39.1 6.7 85 1-119 385-469 (568)
219 PRK14605 ruvA Holliday junctio 52.1 28 0.00061 35.1 5.5 39 77-115 148-188 (194)
220 KOG2198 tRNA cytosine-5-methyl 52.1 38 0.00083 37.7 6.8 128 455-595 120-251 (375)
221 PRK14601 ruvA Holliday junctio 51.3 27 0.00059 35.1 5.2 38 77-115 142-179 (183)
222 PRK14600 ruvA Holliday junctio 48.1 19 0.00042 36.1 3.6 35 151-185 147-181 (186)
223 PLN03075 nicotianamine synthas 47.3 1.2E+02 0.0025 33.0 9.4 77 503-587 123-202 (296)
224 PLN02490 MPBQ/MSBQ methyltrans 45.6 42 0.00091 36.8 5.9 72 503-587 113-185 (340)
225 COG1867 TRM1 N2,N2-dimethylgua 45.1 47 0.001 37.1 6.1 43 504-549 53-97 (380)
226 COG2230 Cfa Cyclopropane fatty 44.9 57 0.0012 35.1 6.6 64 502-568 71-136 (283)
227 PF07223 DUF1421: Protein of u 44.6 19 0.0004 39.9 3.1 27 77-103 321-347 (358)
228 PLN03196 MOC1-like protein; Pr 44.3 45 0.00097 38.2 6.2 24 151-174 342-365 (487)
229 PF04695 Pex14_N: Peroxisomal 42.5 36 0.00079 32.4 4.3 32 75-106 21-52 (136)
230 PF02631 RecX: RecX family; I 42.4 2.7E+02 0.0058 25.4 11.2 71 79-172 47-118 (121)
231 PRK11760 putative 23S rRNA C24 42.4 45 0.00097 37.0 5.5 39 501-542 209-247 (357)
232 PRK14604 ruvA Holliday junctio 39.7 53 0.0011 33.3 5.2 39 77-115 149-189 (195)
233 PRK14603 ruvA Holliday junctio 37.9 37 0.00079 34.5 3.8 34 151-184 154-190 (197)
234 PF05401 NodS: Nodulation prot 37.0 52 0.0011 33.8 4.7 69 505-587 45-113 (201)
235 COG2521 Predicted archaeal met 36.9 20 0.00044 38.0 1.8 99 503-631 134-237 (287)
236 PRK01581 speE spermidine synth 36.7 81 0.0018 35.3 6.5 80 502-589 149-235 (374)
237 PRK00116 ruvA Holliday junctio 35.7 62 0.0013 32.5 5.0 39 77-115 149-188 (192)
238 PRK14602 ruvA Holliday junctio 35.1 43 0.00093 34.1 3.8 35 151-185 157-194 (203)
239 PRK14606 ruvA Holliday junctio 34.9 39 0.00085 34.0 3.4 34 151-184 145-179 (188)
240 KOG2078 tRNA modification enzy 34.5 32 0.00069 39.2 2.9 47 499-548 245-291 (495)
241 KOG0418 Ubiquitin-protein liga 34.3 38 0.00082 34.5 3.1 29 77-105 162-190 (200)
242 cd01968 Nitrogenase_NifE_I Nit 33.8 1.3E+02 0.0028 33.3 7.6 128 453-591 221-367 (410)
243 COG0863 DNA modification methy 33.1 66 0.0014 33.0 4.9 46 501-549 220-265 (302)
244 PF02631 RecX: RecX family; I 33.1 1.1E+02 0.0023 28.0 5.7 26 75-100 93-118 (121)
245 KOG1663 O-methyltransferase [S 32.8 72 0.0016 33.6 5.0 73 505-584 77-153 (237)
246 KOG4169 15-hydroxyprostaglandi 32.7 63 0.0014 34.3 4.5 73 511-588 14-91 (261)
247 KOG1500 Protein arginine N-met 32.5 86 0.0019 35.0 5.7 51 489-542 162-214 (517)
248 PRK14605 ruvA Holliday junctio 32.3 48 0.001 33.5 3.6 35 151-185 150-186 (194)
249 COG0421 SpeE Spermidine syntha 31.8 58 0.0013 34.9 4.2 91 485-586 60-155 (282)
250 COG2242 CobL Precorrin-6B meth 31.0 1E+02 0.0023 31.3 5.6 56 494-552 27-82 (187)
251 PF05219 DREV: DREV methyltran 30.8 1.1E+02 0.0023 32.9 5.9 76 453-545 58-133 (265)
252 PRK14601 ruvA Holliday junctio 30.6 51 0.0011 33.2 3.4 32 151-183 144-175 (183)
253 TIGR01283 nifE nitrogenase mol 30.5 2.2E+02 0.0047 32.2 8.7 131 453-594 260-409 (456)
254 KOG1099 SAM-dependent methyltr 30.4 72 0.0016 33.9 4.5 94 476-589 21-125 (294)
255 COG1189 Predicted rRNA methyla 30.3 66 0.0014 34.0 4.2 65 501-572 77-142 (245)
256 PRK14137 recX recombination re 29.4 1.9E+02 0.0041 29.4 7.2 28 77-104 155-182 (195)
257 PRK14478 nitrogenase molybdenu 29.1 2.3E+02 0.0049 32.4 8.6 128 453-591 254-404 (475)
258 PRK14136 recX recombination re 29.0 6.2E+02 0.013 27.9 11.3 75 79-176 230-305 (309)
259 COG0632 RuvA Holliday junction 28.6 54 0.0012 33.6 3.2 33 153-185 160-195 (201)
260 cd01971 Nitrogenase_VnfN_like 28.2 2.4E+02 0.0052 31.5 8.5 36 453-488 223-261 (427)
261 KOG1122 tRNA and rRNA cytosine 28.2 1.3E+02 0.0027 34.5 6.2 83 503-595 241-327 (460)
262 COG0632 RuvA Holliday junction 27.8 86 0.0019 32.1 4.5 34 81-114 160-196 (201)
263 PLN02823 spermine synthase 27.8 1.5E+02 0.0033 32.4 6.7 78 503-588 103-184 (336)
264 KOG1975 mRNA cap methyltransfe 27.4 61 0.0013 35.9 3.5 91 495-590 108-206 (389)
265 PF10440 WIYLD: Ubiquitin-bind 27.3 1.5E+02 0.0032 25.5 5.0 43 77-119 11-63 (65)
266 KOG3191 Predicted N6-DNA-methy 27.1 1.8E+02 0.004 29.9 6.6 87 495-594 37-124 (209)
267 PF02536 mTERF: mTERF; InterP 26.7 79 0.0017 33.5 4.3 27 76-102 242-268 (345)
268 KOG1499 Protein arginine N-met 26.5 79 0.0017 35.0 4.2 39 500-541 58-96 (346)
269 COG3243 PhaC Poly(3-hydroxyalk 25.7 18 0.00038 41.0 -0.9 74 310-391 332-412 (445)
270 TIGR00084 ruvA Holliday juncti 25.1 76 0.0016 32.0 3.5 36 151-186 149-186 (191)
271 COG1743 Adenine-specific DNA m 25.0 84 0.0018 38.3 4.3 66 498-568 86-151 (875)
272 PF03216 Rhabdo_ncap_2: Rhabdo 24.7 73 0.0016 34.6 3.5 58 3-97 41-98 (357)
273 PF07553 Lipoprotein_Ltp: Host 24.7 83 0.0018 25.3 3.0 25 76-100 20-47 (48)
274 PF08587 UBA_2: Ubiquitin asso 24.4 24 0.00053 28.2 -0.1 22 79-100 4-26 (46)
275 PRK14134 recX recombination re 23.5 2.9E+02 0.0063 29.5 7.7 79 79-175 129-208 (283)
276 cd01976 Nitrogenase_MoFe_alpha 22.7 3E+02 0.0064 30.9 7.9 129 453-594 235-383 (421)
277 PRK10904 DNA adenine methylase 22.4 49 0.0011 34.8 1.7 49 493-546 17-65 (271)
278 PF08242 Methyltransf_12: Meth 22.3 18 0.00038 31.0 -1.4 34 508-542 1-34 (99)
279 TIGR01285 nifN nitrogenase mol 22.2 2.1E+02 0.0046 32.2 6.7 126 452-594 248-387 (432)
280 PRK14604 ruvA Holliday junctio 22.2 89 0.0019 31.7 3.4 34 151-184 151-186 (195)
281 PF03115 Astro_capsid: Astrovi 21.7 31 0.00066 41.9 0.0 45 57-103 692-736 (787)
282 PHA01634 hypothetical protein 21.5 1.9E+02 0.0042 28.3 5.3 43 504-548 29-71 (156)
283 PF07553 Lipoprotein_Ltp: Host 21.5 83 0.0018 25.3 2.4 19 155-173 27-48 (48)
284 PRK13901 ruvA Holliday junctio 21.4 91 0.002 31.9 3.3 27 77-103 144-170 (196)
285 PF08704 GCD14: tRNA methyltra 21.4 1.8E+02 0.0039 30.6 5.5 72 491-564 30-102 (247)
286 PF02031 Peptidase_M7: Strepto 21.0 25 0.00055 33.8 -0.7 18 451-468 80-97 (132)
287 TIGR00571 dam DNA adenine meth 21.0 53 0.0012 34.3 1.6 47 495-546 16-63 (266)
No 1
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=99.90 E-value=2.3e-24 Score=219.47 Aligned_cols=105 Identities=22% Similarity=0.401 Sum_probs=87.3
Q ss_pred CcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 006634 505 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV 584 (637)
Q Consensus 505 l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLV 584 (637)
||||||||||||+++||+++|| ++++|+|+|+.|+++|+.+|. .+..+||++++.+.|+. ++|||
T Consensus 1 ~~~~dlFsG~Gg~~~g~~~ag~--~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~------~~D~l 65 (335)
T PF00145_consen 1 MKVIDLFSGIGGFSLGLEQAGF--EVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPK------DVDLL 65 (335)
T ss_dssp EEEEEET-TTTHHHHHHHHTTE--EEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHH------T-SEE
T ss_pred CcEEEEccCccHHHHHHHhcCc--EEEEEeecCHHHHHhhhhccc-------ccccccccccccccccc------cceEE
Confidence 5899999999999999999996 689999999999999998774 36789999999886652 59999
Q ss_pred EEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006634 585 ICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 636 (637)
Q Consensus 585 IGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK~~~ 636 (637)
+||||||+||.+ |++.|+.|+|+.||++|+|+|+++||..
T Consensus 66 ~ggpPCQ~fS~a------------g~~~~~~d~r~~L~~~~~~~v~~~~Pk~ 105 (335)
T PF00145_consen 66 IGGPPCQGFSIA------------GKRKGFDDPRNSLFFEFLRIVKELKPKY 105 (335)
T ss_dssp EEE---TTTSTT------------STHHCCCCHTTSHHHHHHHHHHHHS-SE
T ss_pred EeccCCceEecc------------ccccccccccchhhHHHHHHHhhccceE
Confidence 999999999975 3356899999999999999999999864
No 2
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=99.90 E-value=3.7e-24 Score=225.21 Aligned_cols=109 Identities=20% Similarity=0.350 Sum_probs=95.3
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.++++|||||||||+++||+++|| ++++++|||+.|++||+.++.. ..++..||.++..+.+... ++|
T Consensus 2 ~~~~~idLFsG~GG~~lGf~~agf--~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~~~~~-----~~D 69 (328)
T COG0270 2 EKMKVIDLFAGIGGLSLGFEEAGF--EIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEALRKS-----DVD 69 (328)
T ss_pred CCceEEeeccCCchHHHHHHhcCC--eEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhhcccc-----CCC
Confidence 468999999999999999999996 6899999999999999876532 3466789999998776532 799
Q ss_pred EEEEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 006634 583 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 635 (637)
Q Consensus 583 LVIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK~~ 635 (637)
+||||||||+||. ||+|.|++|+|++||++|+|+|..+||.
T Consensus 70 vligGpPCQ~FS~------------aG~r~~~~D~R~~L~~~~~r~I~~~~P~ 110 (328)
T COG0270 70 VLIGGPPCQDFSI------------AGKRRGYDDPRGSLFLEFIRLIEQLRPK 110 (328)
T ss_pred EEEeCCCCcchhh------------cCcccCCcCccceeeHHHHHHHHhhCCC
Confidence 9999999999996 4567789999999999999999999984
No 3
>PRK10458 DNA cytosine methylase; Provisional
Probab=99.86 E-value=4.4e-22 Score=218.78 Aligned_cols=126 Identities=17% Similarity=0.284 Sum_probs=97.6
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHH--------Hh
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE--------SL 574 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie--------~l 574 (637)
.++++|||||||||+++||+++|+ ++|+++|+|+.|++||+.+|.. .+..++..+||++++...+. ..
T Consensus 87 ~~~~~iDLFsGiGGl~lGfe~aG~--~~v~a~Eid~~A~~TY~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~ 162 (467)
T PRK10458 87 YAFRFIDLFAGIGGIRRGFEAIGG--QCVFTSEWNKHAVRTYKANWYC--DPATHRFNEDIRDITLSHKEGVSDEEAAEH 162 (467)
T ss_pred CCceEEEeCcCccHHHHHHHHcCC--EEEEEEechHHHHHHHHHHcCC--CCccceeccChhhCccccccccchhhhhhh
Confidence 368999999999999999999998 5899999999999999987642 23344567899999854322 11
Q ss_pred h-hccCCccEEEEcCCCCCcCccCccCCCCCccccccCCCCC-CCCcchHHHHHHHHHHhhccc
Q 006634 575 I-HKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLP-DFDFSLYYEFVRVVQRVRSMK 636 (637)
Q Consensus 575 ~-~~~g~~DLVIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~-D~Rs~LF~Ey~RIV~~vK~~~ 636 (637)
+ ...+++|||+||||||+||.++.. +++ -.|++.|+. |+|++||++|+|||+++||.+
T Consensus 163 ~~~~~p~~DvL~gGpPCQ~FS~AG~~--k~~--~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk~ 222 (467)
T PRK10458 163 IRQHIPDHDVLLAGFPCQPFSLAGVS--KKN--SLGRAHGFECETQGTLFFDVARIIDAKRPAI 222 (467)
T ss_pred hhccCCCCCEEEEcCCCCccchhccc--ccc--cccccccccCCccccHHHHHHHHHHHhCCCE
Confidence 1 134689999999999999987541 111 124455775 889999999999999999864
No 4
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=99.85 E-value=8.3e-22 Score=202.87 Aligned_cols=106 Identities=19% Similarity=0.364 Sum_probs=91.7
Q ss_pred CcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 006634 505 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV 584 (637)
Q Consensus 505 l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLV 584 (637)
++|+|||||+||+++||+++|+ ++++++|+++.|+++|+.+|.. .++.+||++++...+ .+++|||
T Consensus 1 ~~v~dLFsG~Gg~~~gl~~~G~--~~v~a~e~~~~a~~~~~~N~~~------~~~~~Di~~~~~~~~------~~~~D~l 66 (275)
T cd00315 1 LRVIDLFAGIGGFRLGLEKAGF--EIVAANEIDKSAAETYEANFPN------KLIEGDITKIDEKDF------IPDIDLL 66 (275)
T ss_pred CcEEEEccCcchHHHHHHHcCC--EEEEEEeCCHHHHHHHHHhCCC------CCccCccccCchhhc------CCCCCEE
Confidence 5899999999999999999997 5799999999999999986632 256799999987543 3579999
Q ss_pred EEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006634 585 ICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 636 (637)
Q Consensus 585 IGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK~~~ 636 (637)
+||||||+||.+ |++.|..|+|+.||++|+|+|+++||.+
T Consensus 67 ~~gpPCq~fS~a------------g~~~~~~d~r~~L~~~~~~~i~~~~P~~ 106 (275)
T cd00315 67 TGGFPCQPFSIA------------GKRKGFEDTRGTLFFEIIRILKEKKPKY 106 (275)
T ss_pred EeCCCChhhhHH------------hhcCCCCCchHHHHHHHHHHHHhcCCCE
Confidence 999999999975 3356788999999999999999999864
No 5
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.85 E-value=8.4e-22 Score=206.53 Aligned_cols=103 Identities=17% Similarity=0.366 Sum_probs=88.7
Q ss_pred ccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEEE
Q 006634 507 MLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVIC 586 (637)
Q Consensus 507 vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIG 586 (637)
||||||||||+++||+++|| ++++++|+++.|+++|+.+|. + .++.+||++++..++ +++|||+|
T Consensus 1 vidLF~G~GG~~~Gl~~aG~--~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~~-------~~~dvl~g 65 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGF--KCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSDI-------PDFDILLG 65 (315)
T ss_pred CEEEecCccHHHHHHHHcCC--eEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhhC-------CCcCEEEe
Confidence 68999999999999999997 579999999999999987653 3 355789999886543 47999999
Q ss_pred cCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006634 587 QNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 636 (637)
Q Consensus 587 GpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK~~~ 636 (637)
|||||+||.+ |++.|++|+|+.||++|+|+|+++||..
T Consensus 66 g~PCq~fS~a------------g~~~~~~d~r~~L~~~~~r~i~~~~P~~ 103 (315)
T TIGR00675 66 GFPCQPFSIA------------GKRKGFEDTRGTLFFEIVRILKEKKPKF 103 (315)
T ss_pred cCCCcccchh------------cccCCCCCchhhHHHHHHHHHhhcCCCE
Confidence 9999999975 3466888999999999999999999853
No 6
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=99.26 E-value=6.6e-12 Score=127.56 Aligned_cols=111 Identities=18% Similarity=0.321 Sum_probs=95.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
..++|++|++|+|||..+|+.+.|+-.+|.|+|+++.|..+|+. |..+.++-..||+.|+.+++..+ .++
T Consensus 2 ~pLrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~-----N~h~~L~k~~~I~~lt~kefd~l-----~~~ 71 (338)
T KOG0919|consen 2 MPLRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAH-----NYHSNLVKTRNIQSLTVKEFDKL-----QAN 71 (338)
T ss_pred CceehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhc-----CcccchhhccccceeeHhhhhhc-----ccc
Confidence 35899999999999999999999999999999999999999965 33456677889999999888765 789
Q ss_pred EEEEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 006634 583 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 635 (637)
Q Consensus 583 LVIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK~~ 635 (637)
++...||||+|... |.++.+.|+|+..|.+.+.+|-+++..
T Consensus 72 m~lMSPpCQPfTRi------------G~q~D~~D~Rs~aflhil~~lP~~q~L 112 (338)
T KOG0919|consen 72 MLLMSPPCQPFTRI------------GLQRDTEDKRSDAFLHILGLLPECQEL 112 (338)
T ss_pred eEeeCCCCCchhhh------------cccccccCchhHHHHHHHhhhhhhhhh
Confidence 99999999999953 234458899999999999999888653
No 7
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=99.20 E-value=8.8e-12 Score=128.84 Aligned_cols=157 Identities=13% Similarity=0.168 Sum_probs=110.7
Q ss_pred CCCCccccccccccch----hhHHHhhhhh----ccCCceeeccccc-chhccccccc-c---cCCCCCCC--CCCCCCC
Q 006634 308 AQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL-H---NLPTTNRF--HIPPEPP 372 (637)
Q Consensus 308 ~~ppfF~yeNV~~~~~----~~w~~IsrfL----~~i~Pe~vds~~f-saa~R~Rgy~-h---NLP~~~R~--~~~p~~p 372 (637)
.+|++|++|||..+-. ..+..|.+.| |.+.+.++|+..| .|+.|+|.|+ . .++...-. |-.+.++
T Consensus 102 ~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~~~l~a~~~GvPQ~R~R~~~ia~~~~~~~~~~~~~p~~~~~~ 181 (275)
T cd00315 102 KKPKYFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWKLLNASDYGVPQNRERVFIIGIRKDLILNFFSPFPKPSEKK 181 (275)
T ss_pred cCCCEEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEEEEEEHHHcCCCCCCcEEEEEEEeCCCCccccccCCCCCCCC
Confidence 4899999999999865 4566776666 6789999999999 7889999995 2 22222111 1122346
Q ss_pred CccccccCCCCCCCCCcCcccccceecccCcchhHHHHHHHHHHhhhcCCCchhhhHHHHHhhcccceeeecCccccCCC
Q 006634 373 MTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVD 452 (637)
Q Consensus 373 ~ti~e~lp~~~~~wp~wd~r~k~~ci~t~~~~~~~l~~ri~~~~~~~~~~~~~~~q~~vl~~c~~~nlvW~g~~~~~ple 452 (637)
.|+.|+| ++..|+. -..|+++.... ... ...+. ..-+|..+...+.|+
T Consensus 182 ~t~~d~l-----~~~~~~~--~~~ti~~~~~~---~~~----------~~~~~------------~~~~~~~~~~~R~lT 229 (275)
T cd00315 182 KTLKDIL-----RIRDPDE--PSPTLTASYGK---GTG----------SVHPT------------APDMIGKESNIRRLT 229 (275)
T ss_pred CcHHHHH-----hhhcCCC--CccceecCCCC---Ccc----------ccccC------------cccccccCCCCCCCC
Confidence 8999999 5566776 45677665421 001 00000 001145677899999
Q ss_pred hhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhhccc
Q 006634 453 PEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL 497 (637)
Q Consensus 453 ~~E~E~i~GfP~~~T~~~~~~~teR~k~Lgnsfqvdtv~~~lsvL 497 (637)
+.|+.||+|||++|+..++ +.+.+++.+||+..+..++++...+
T Consensus 230 ~rE~arlqgFPd~f~f~g~-~~~~~~~qiGNAVp~~~~~~I~~~i 273 (275)
T cd00315 230 PRECARLQGFPDDFEFPGK-SVTQAYRQIGNSVPVPVAEAIAKAI 273 (275)
T ss_pred HHHHHHHcCCCCCcEEcCC-CHHHHHHhhcCCcCHHHHHHHHHHH
Confidence 9999999999999998644 8999999999999998887766443
No 8
>PRK10458 DNA cytosine methylase; Provisional
Probab=98.54 E-value=5.7e-08 Score=108.00 Aligned_cols=57 Identities=11% Similarity=0.152 Sum_probs=48.5
Q ss_pred CccccCCChhhHHHHhcC--CCCCcccCCCChHHHHHhhhhhhcccchhhhhccccccC
Q 006634 445 AYKLGPVDPEHIELILGY--PSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMF 501 (637)
Q Consensus 445 ~~~~~ple~~E~E~i~Gf--P~~~T~~~~~~~teR~k~Lgnsfqvdtv~~~lsvLK~~f 501 (637)
.++++.|+|-|+-||+|| |..++....+|.++.||.+|||..|++++.++..|+.+.
T Consensus 398 ~~~~RrLTprE~aRLqGF~~pd~~~F~~~vSdtq~Ykq~GNSV~Vpvv~aIa~~L~~~~ 456 (467)
T PRK10458 398 QHRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGNSVVVPVFAAVAKLLEPKI 456 (467)
T ss_pred cCCcccCCHHHHHHhCCCCCCccccccCCCCHHHHHHHhCCcccHHHHHHHHHHHHHHH
Confidence 357899999999999999 555665568999999999999999999998887776643
No 9
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=98.39 E-value=9.5e-08 Score=97.83 Aligned_cols=55 Identities=11% Similarity=0.201 Sum_probs=42.1
Q ss_pred eecCccccCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhhcccc
Q 006634 442 WVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLK 498 (637)
Q Consensus 442 W~g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lgnsfqvdtv~~~lsvLK 498 (637)
+..+.+.+.|++.|+.||+|||++|.. ..+.+++++.+||+..+....++...|+
T Consensus 280 ~~hp~~~R~LT~rE~aRLqgFPd~~~f--~g~~~~~~~qiGNAVpp~v~~~I~~~i~ 334 (335)
T PF00145_consen 280 FIHPEQNRRLTPREAARLQGFPDDFKF--PGSKTQQYKQIGNAVPPPVAEAIAKAIK 334 (335)
T ss_dssp EBTTSSSCB-BHHHHHHHTTSSTTS-S---SSHHHHHHHHHCS--HHHHHHHHHHHH
T ss_pred ccCCCCCCcCcHHHHHHhCCCCCceEc--cCCHHHHhceECCCcCHHHHHHHHHHhh
Confidence 355789999999999999999999988 4556699999999998888777765543
No 10
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.82 E-value=5.6e-05 Score=66.73 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=59.1
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCcc
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
|.+|||+|||.|-+.+.+.+.| . ..++++|+|+.+....+.++...... ...++.+|++++.. . ...+.+|
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~-~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-~-----~~~~~~D 72 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-A-ARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPE-P-----LPDGKFD 72 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-T-CEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHH-T-----CTTT-EE
T ss_pred CCEEEEcCcchHHHHHHHHHHC-C-CeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchh-h-----ccCceeE
Confidence 4689999999999999999999 2 45789999999999998877654321 22355677765531 0 1236899
Q ss_pred EEEEcCCCCCcC
Q 006634 583 FVICQNSVPQIP 594 (637)
Q Consensus 583 LVIGGpPCQ~FS 594 (637)
+|++-||.-+..
T Consensus 73 ~Iv~npP~~~~~ 84 (117)
T PF13659_consen 73 LIVTNPPYGPRS 84 (117)
T ss_dssp EEEE--STTSBT
T ss_pred EEEECCCCcccc
Confidence 999999986543
No 11
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.81 E-value=4.6e-06 Score=88.22 Aligned_cols=178 Identities=14% Similarity=0.184 Sum_probs=94.6
Q ss_pred cCCCCccccccccccch----hhHHHhhhhh----ccCCceeeccccc-chhcccccccccCC---CCCCCCCCCC----
Q 006634 307 VAQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLHNLP---TTNRFHIPPE---- 370 (637)
Q Consensus 307 ~~~ppfF~yeNV~~~~~----~~w~~IsrfL----~~i~Pe~vds~~f-saa~R~Rgy~hNLP---~~~R~~~~p~---- 370 (637)
..+|.||++|||..+-. ..+..|-+-| |.+...++||..| .|++|+|.|+--.- ....+ ..|.
T Consensus 98 ~~~P~~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~~~l~a~dyGvPQ~R~R~f~ia~r~~~~~~~~-~~p~~~~~ 176 (315)
T TIGR00675 98 EKKPKFFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYYKVLNAKDFGVPQNRERIYIVGFRDFDDKLNF-EFPKPIYV 176 (315)
T ss_pred hcCCCEEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEEEEEcHHHCCCCCCccEEEEEEEeCCCcCcCC-CCCCCccc
Confidence 45899999999987643 3566665555 6778899999999 99999999875322 11111 2232
Q ss_pred -CCCccccccCCCC----CCCCCcCcccccceeccc-------------CcchhHHHHHHHHHHhhhcCCCchhhhHHHH
Q 006634 371 -PPMTIQDAIPHTK----KWWPSWDTRKHLSCINSG-------------TSGISQLCERFEKLLRDSRGVLSSQQQRDIL 432 (637)
Q Consensus 371 -~p~ti~e~lp~~~----~~wp~wd~r~k~~ci~t~-------------~~~~~~l~~ri~~~~~~~~~~~~~~~q~~vl 432 (637)
...||.|++.... .|+++-...+.+..+... .+.........+++..+.... ......+.
T Consensus 177 ~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~t~~ 254 (315)
T TIGR00675 177 AKKKRIGDLLDLSVDLEEKYYLSEEKKNGLLLLLENMRKKEGTGEQIGSFYNRESKSSIIRTLSARGYTF--VKGGKSVL 254 (315)
T ss_pred ccccchHHhcccccCcCCcEEeCHHHHHHHHHHhhccccccccccccceeeccCCccceeeeeecccccc--CCCCccee
Confidence 3567877774321 111110000000000000 000000000000111100000 00000000
Q ss_pred HhhcccceeeecCccccCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchh
Q 006634 433 HRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLG 491 (637)
Q Consensus 433 ~~c~~~nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lgnsfqvdtv~ 491 (637)
..+. .+.. .-+.+.+.|++.|.-||+|||++|.. ..+.+..++.+||+.-+....
T Consensus 255 ~~~~-~~~~-~hp~~~R~lT~RE~aRLQ~FPd~f~f--~~s~~~~~~qiGNAVPp~la~ 309 (315)
T TIGR00675 255 IVPH-KSTV-VHPGRIRRLTPRECARLQGFPDDFKF--PVSDSQLYKQAGNAVVVPVIE 309 (315)
T ss_pred eccc-ccee-ccCCceeeCCHHHHHHHcCCCcccEe--CCCHHHHHhhhCCcccHHHHH
Confidence 0011 0111 23567799999999999999999976 579999999999998665443
No 12
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.45 E-value=5.6e-05 Score=80.43 Aligned_cols=177 Identities=14% Similarity=0.139 Sum_probs=98.0
Q ss_pred cCCCCccccccccccchh---hHHHhhhhhc----cCCceeecccc-cchhcccccccc-----cCCCCCCCCCCCC---
Q 006634 307 VAQPPYFFYGNVVDVSID---CWVKMSHFLY----SLEPEFVNSQY-FSALSRREGYLH-----NLPTTNRFHIPPE--- 370 (637)
Q Consensus 307 ~~~ppfF~yeNV~~~~~~---~w~~IsrfL~----~i~Pe~vds~~-fsaa~R~Rgy~h-----NLP~~~R~~~~p~--- 370 (637)
..+|.||++|||..|-.. .|+.|.+-|. .+...++||+. --|++|.|.|+. |+-...--. .+.
T Consensus 106 ~~~P~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~~~~~ilna~dyGvPQ~ReRvfiig~~~~~~~~~~~~~-~~~~~~ 184 (328)
T COG0270 106 QLRPKFFVLENVKGLLSSKGQTFDEIKKELEELGYGVEFNILNAADYGVPQSRERVFIVGFRRDNIDLDPNVL-PPLPLG 184 (328)
T ss_pred hhCCCEEEEecCchHHhcCchHHHHHHHHHHHcCCcchHheeeHHhcCCCCCccEEEEEEecCcccccccccc-Cccccc
Confidence 456799999999999886 8888888774 45566777665 578999999999 777664311 111
Q ss_pred CCCcccccc-----CCCCCCCC-CcCcccccceecccCcchhHHHHHHHHH--------H---------hhhc-CCCchh
Q 006634 371 PPMTIQDAI-----PHTKKWWP-SWDTRKHLSCINSGTSGISQLCERFEKL--------L---------RDSR-GVLSSQ 426 (637)
Q Consensus 371 ~p~ti~e~l-----p~~~~~wp-~wd~r~k~~ci~t~~~~~~~l~~ri~~~--------~---------~~~~-~~~~~~ 426 (637)
...++-+++ +.+..-|. .+...-..+-+... ...++... . .+.. ..+...
T Consensus 185 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~t 258 (328)
T COG0270 185 RKKTLKEALKNNDLPETDELYLSRDLRNHEAKSLPKN------KGERLPSLRWGEALTLSRRYKGKGSYIRLHPDKPAPT 258 (328)
T ss_pred cccchhhhhhhccCcchhhhhccccccccccccCchh------hhccccccccccccccccccCCCceeEeCCCCCCCce
Confidence 022222211 11111000 00000000000000 00000000 0 0000 000000
Q ss_pred hhHHHHHhhcccceeeecCccccCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhhccccc
Q 006634 427 QQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS 499 (637)
Q Consensus 427 ~q~~vl~~c~~~nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lgnsfqvdtv~~~lsvLK~ 499 (637)
+ . ...+-.=+-+..-+.|++.|+-+|+|||+.|...+ +.+.+++.+||+..+....++..-+..
T Consensus 259 ~----~---~~~~~~~~h~~~~r~lt~rE~arlq~fPd~~~~~g--s~~~~~~qiGnsVp~~l~~~ia~~i~~ 322 (328)
T COG0270 259 V----R---GGGNERFIHPLEDRELTVREAARLQGFPDDFVFPG--SKTDQYRQIGNSVPPLLAEAIAKAILK 322 (328)
T ss_pred e----e---cCCCcccCCCCcCCCCCHHHHHHhcCCCCceEEec--cchhhhhhccCcCCHHHHHHHHHHHHH
Confidence 0 0 01111112355667799999999999999999975 999999999999988877776655443
No 13
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.39 E-value=0.00023 Score=70.22 Aligned_cols=82 Identities=22% Similarity=0.261 Sum_probs=49.3
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+.+|||||||.|.+.+=.-.-|. +-|+.||.++.++++++.+....+... ..++..|... .+..+......|
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~----~l~~~~~~~~~f 115 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFK----FLLKLAKKGEKF 115 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHH----HHHHHHHCTS-E
T ss_pred CCCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHH----HHHhhcccCCCc
Confidence 578899999999988764445576 468899999999999999887654221 1122333321 122222234689
Q ss_pred cEEEEcCCC
Q 006634 582 DFVICQNSV 590 (637)
Q Consensus 582 DLVIGGpPC 590 (637)
|||.--||=
T Consensus 116 DiIflDPPY 124 (183)
T PF03602_consen 116 DIIFLDPPY 124 (183)
T ss_dssp EEEEE--ST
T ss_pred eEEEECCCc
Confidence 999999983
No 14
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.24 E-value=0.00074 Score=66.75 Aligned_cols=83 Identities=17% Similarity=0.064 Sum_probs=56.2
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+-+|||||||.|.+.+.+-..|.. .|++||+++.+.++.+.++...+... ..++.+|+.+. +..+......+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~----l~~~~~~~~~~ 122 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRA----LKFLAKKPTFD 122 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHH----HHHhhccCCCc
Confidence 3568999999999999999888873 58999999999999998876543211 12344555321 11111111237
Q ss_pred cEEEEcCCCC
Q 006634 582 DFVICQNSVP 591 (637)
Q Consensus 582 DLVIGGpPCQ 591 (637)
|+|+--||=.
T Consensus 123 dvv~~DPPy~ 132 (189)
T TIGR00095 123 NVIYLDPPFF 132 (189)
T ss_pred eEEEECcCCC
Confidence 8998888853
No 15
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.17 E-value=0.00059 Score=73.69 Aligned_cols=95 Identities=21% Similarity=0.255 Sum_probs=70.0
Q ss_pred hcccchhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-Cccccccc
Q 006634 485 FQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDI 563 (637)
Q Consensus 485 fqvdtv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI 563 (637)
|+.-...-+..+++..++ |-+|+|+|||+|-+++-....|-. + |+|+|||+.|.+-++.+-.-+.-.+ ...+++|.
T Consensus 171 Fsprl~~ER~Rva~~v~~-GE~V~DmFAGVGpfsi~~Ak~g~~-~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~ 247 (341)
T COG2520 171 FSPRLSTERARVAELVKE-GETVLDMFAGVGPFSIPIAKKGRP-K-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDA 247 (341)
T ss_pred ECCCchHHHHHHHhhhcC-CCEEEEccCCcccchhhhhhcCCc-e-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccH
Confidence 555555555666666555 899999999999999999999953 4 8999999999999988764322222 12467887
Q ss_pred cccChhhHHHhhhccCCccEEEEcCCC
Q 006634 564 QALTTKKFESLIHKLGSIDFVICQNSV 590 (637)
Q Consensus 564 ~~Lt~~~Ie~l~~~~g~~DLVIGGpPC 590 (637)
+++-.+ .+.+|=||-|-|=
T Consensus 248 rev~~~--------~~~aDrIim~~p~ 266 (341)
T COG2520 248 REVAPE--------LGVADRIIMGLPK 266 (341)
T ss_pred HHhhhc--------cccCCEEEeCCCC
Confidence 766542 2678999999884
No 16
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.14 E-value=0.00094 Score=67.13 Aligned_cols=80 Identities=23% Similarity=0.285 Sum_probs=49.8
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCc-cccccccccChhhHHHhhhccC
Q 006634 501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTKKFESLIHKLG 579 (637)
Q Consensus 501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l-~~~~DI~~Lt~~~Ie~l~~~~g 579 (637)
+..+-+|+|+|||+|.+++-+.+.+ +.+.|+|+|+++.|.+-++.+-...+-.+.+ +..+|.+++.. .+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~---------~~ 168 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP---------EG 168 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG------------TT
T ss_pred CCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC---------cc
Confidence 4567899999999999999888743 2356899999999999998876543333322 35677766543 24
Q ss_pred CccEEEEcCCC
Q 006634 580 SIDFVICQNSV 590 (637)
Q Consensus 580 ~~DLVIGGpPC 590 (637)
.+|-|+.+.|=
T Consensus 169 ~~drvim~lp~ 179 (200)
T PF02475_consen 169 KFDRVIMNLPE 179 (200)
T ss_dssp -EEEEEE--TS
T ss_pred ccCEEEECChH
Confidence 68999988883
No 17
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.11 E-value=0.00092 Score=68.81 Aligned_cols=82 Identities=13% Similarity=0.138 Sum_probs=57.5
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 583 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 583 (637)
..+||||+||.|.+.+.+.+..-. ..++++|+++.+.+..+.+....+ ..+..+|+.+.-... ..+.||+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~-~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~~------~~~~fDl 156 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDG-IELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPTA------LRGRVDI 156 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcchh------cCCCEeE
Confidence 458999999999999988754211 246899999999998887764322 234567765422111 1246999
Q ss_pred EEEcCCCCCcCc
Q 006634 584 VICQNSVPQIPN 595 (637)
Q Consensus 584 VIGGpPCQ~FS~ 595 (637)
|+.-|||.+.+.
T Consensus 157 Vv~NPPy~~~~~ 168 (251)
T TIGR03704 157 LAANAPYVPTDA 168 (251)
T ss_pred EEECCCCCCchh
Confidence 999999998763
No 18
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.05 E-value=0.0014 Score=72.02 Aligned_cols=82 Identities=20% Similarity=0.210 Sum_probs=58.0
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC--CCccccccccccChhhHHHhhhccCC
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~--g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
.+-+|||||||+||+++.....|. .-|++||+++.+....+.++...+.. ...++.+|+.++ +..+....+.
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~----l~~~~~~~~~ 293 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKL----LRTYRDRGEK 293 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHH----HHHHHhcCCC
Confidence 467899999999999887666664 35789999999999998887654321 122456777543 2222222347
Q ss_pred ccEEEEcCCC
Q 006634 581 IDFVICQNSV 590 (637)
Q Consensus 581 ~DLVIGGpPC 590 (637)
||+||--||+
T Consensus 294 fDlVilDPP~ 303 (396)
T PRK15128 294 FDVIVMDPPK 303 (396)
T ss_pred CCEEEECCCC
Confidence 9999999997
No 19
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.05 E-value=0.0017 Score=65.01 Aligned_cols=77 Identities=12% Similarity=0.085 Sum_probs=52.4
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 583 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 583 (637)
+-+|||||||.|.+.+.+-..|. .-|++||+++.+.+..+.+....+.....++.+|+.+. +. ...+.+|+
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~----l~---~~~~~fDl 124 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF----LA---QPGTPHNV 124 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH----Hh---hcCCCceE
Confidence 46899999999999985433343 35789999999999999887654322222345555321 11 11236999
Q ss_pred EEEcCC
Q 006634 584 VICQNS 589 (637)
Q Consensus 584 VIGGpP 589 (637)
|+--||
T Consensus 125 V~~DPP 130 (199)
T PRK10909 125 VFVDPP 130 (199)
T ss_pred EEECCC
Confidence 999999
No 20
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.96 E-value=0.001 Score=65.11 Aligned_cols=81 Identities=22% Similarity=0.213 Sum_probs=48.0
Q ss_pred cccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCC-ccE
Q 006634 506 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGS-IDF 583 (637)
Q Consensus 506 ~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~-~DL 583 (637)
+|||+|||+||=++.|.+.+ ..|+|||+|+...+..+++-.-.+. ....++.+|..++-.. .+... +|+
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~------~~~~~~~D~ 72 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKR------LKSNKIFDV 72 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGG------B------SE
T ss_pred EEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhh------ccccccccE
Confidence 58999999999999999985 4589999999998888876443210 0112344555442211 01122 799
Q ss_pred EEEcCCCCCcCc
Q 006634 584 VICQNSVPQIPN 595 (637)
Q Consensus 584 VIGGpPCQ~FS~ 595 (637)
|...||=-+.+.
T Consensus 73 vFlSPPWGGp~Y 84 (163)
T PF09445_consen 73 VFLSPPWGGPSY 84 (163)
T ss_dssp EEE---BSSGGG
T ss_pred EEECCCCCCccc
Confidence 999999887775
No 21
>PHA03412 putative methyltransferase; Provisional
Probab=96.87 E-value=0.0016 Score=67.38 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=80.1
Q ss_pred cCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhhccccccCCCCCcccccCCCCChHHHHHHHcC--C
Q 006634 449 GPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLG--I 526 (637)
Q Consensus 449 ~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lgnsfqvdtv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aG--i 526 (637)
++|+-+|.|.++ .||+-. . .--.+.+|..|....+++++... . . .+.+|||+.||.|.+.+.+-+.- -
T Consensus 5 ~~~~~~~~~f~~---~n~~~~-~---~~~~~~~GqFfTP~~iAr~~~i~-~-~-~~grVLDlG~GSG~Lalala~~~~~~ 74 (241)
T PHA03412 5 KALTYEEKLFII---ENFHEG-A---FTNNSELGAFFTPIGLARDFTID-A-C-TSGSVVDLCAGIGGLSFAMVHMMMYA 74 (241)
T ss_pred ccccHHHHHHHH---hhcccc-c---ccccccCCccCCCHHHHHHHHHh-c-c-CCCEEEEccChHHHHHHHHHHhcccC
Confidence 456677777766 466662 1 12234557788888888776432 2 2 35799999999999999876531 1
Q ss_pred ceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEEEcCCCCCcC
Q 006634 527 KLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIP 594 (637)
Q Consensus 527 ~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS 594 (637)
+-..+.+||||+.+.+..+.+. ....++..|+..... .+.||+||+=||=-...
T Consensus 75 ~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~---------~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 75 KPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEF---------DTLFDMAISNPPFGKIK 128 (241)
T ss_pred CCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccc---------cCCccEEEECCCCCCcc
Confidence 1125789999999988776532 223355677764321 24799999999965543
No 22
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=96.79 E-value=0.0032 Score=58.91 Aligned_cols=84 Identities=20% Similarity=0.270 Sum_probs=62.4
Q ss_pred CCCcccccCCCCChHHHHHH-HcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~-~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+.+||||-||.|-+...|. +++-.. -++++|+++.+.+..+......+.....++.+||.++... ++ +.|
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~-~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-~~------~~~ 74 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGA-KIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-LE------EKF 74 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTS-EEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-SS------TTE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCC-EEEEEECcHHHHHHhhcccccccccccceEEeehhccccc-cC------CCe
Confidence 46899999999999999999 565433 3789999999999888766544333344677999886643 32 479
Q ss_pred cEEEEcCCCCCcC
Q 006634 582 DFVICQNSVPQIP 594 (637)
Q Consensus 582 DLVIGGpPCQ~FS 594 (637)
|+|+...++..+.
T Consensus 75 D~I~~~~~l~~~~ 87 (152)
T PF13847_consen 75 DIIISNGVLHHFP 87 (152)
T ss_dssp EEEEEESTGGGTS
T ss_pred eEEEEcCchhhcc
Confidence 9999998885444
No 23
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=96.66 E-value=0.01 Score=63.12 Aligned_cols=82 Identities=20% Similarity=0.165 Sum_probs=58.1
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
+.+.+|||+|||.|++.+.+...|. .++++|+++...+..+.+....+.....+..+|+.++... .+.+
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~---~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~--------~~~~ 249 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGA---KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS--------SESV 249 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCC---eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc--------cCCC
Confidence 3467899999999999877777775 3689999998877666665443322223456777765421 2479
Q ss_pred cEEEEcCCCCCcC
Q 006634 582 DFVICQNSVPQIP 594 (637)
Q Consensus 582 DLVIGGpPCQ~FS 594 (637)
|+|+.-|||...+
T Consensus 250 D~Iv~dPPyg~~~ 262 (329)
T TIGR01177 250 DAIATDPPYGRST 262 (329)
T ss_pred CEEEECCCCcCcc
Confidence 9999999986544
No 24
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=96.62 E-value=0.0046 Score=63.95 Aligned_cols=85 Identities=13% Similarity=0.099 Sum_probs=57.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+-+|||++||.||.++.+.++--+--.|+++|+++...+.++.+....+.....+...|.+.+.. ..+.||
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~--------~~~~fD 142 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGA--------AVPKFD 142 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhh--------hccCCC
Confidence 357899999999999988765311111478999999999888877654432211234455543321 124699
Q ss_pred EEEEcCCCCCcCc
Q 006634 583 FVICQNSVPQIPN 595 (637)
Q Consensus 583 LVIGGpPCQ~FS~ 595 (637)
+|+--+||.+...
T Consensus 143 ~Vl~D~Pcsg~G~ 155 (264)
T TIGR00446 143 AILLDAPCSGEGV 155 (264)
T ss_pred EEEEcCCCCCCcc
Confidence 9999999986654
No 25
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=96.52 E-value=0.0033 Score=68.28 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=54.2
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 583 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 583 (637)
+-+|||||||+|.+++.+...|- .|++||+++.+.+..+.+....+-....+..+|+.++... ..+.+|+
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~-------~~~~~D~ 303 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA-------QMSAPEL 303 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh-------cCCCCCE
Confidence 35899999999999998887763 4789999999999998876543221122455666443211 1135899
Q ss_pred EEEcCC
Q 006634 584 VICQNS 589 (637)
Q Consensus 584 VIGGpP 589 (637)
|+-=||
T Consensus 304 vi~DPP 309 (374)
T TIGR02085 304 VLVNPP 309 (374)
T ss_pred EEECCC
Confidence 999998
No 26
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=96.49 E-value=0.0049 Score=65.21 Aligned_cols=81 Identities=22% Similarity=0.214 Sum_probs=57.8
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 583 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 583 (637)
+-+|||||||.|.+++.|.+.|- -|+++|+++.+.+..+.+....+-....++.+|+.++... ..+.+|+
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~-------~~~~~D~ 243 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA-------QGEVPDL 243 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh-------cCCCCeE
Confidence 46899999999999999998774 4789999999998887765433221122455666543210 1236899
Q ss_pred EEEcCCCCCcC
Q 006634 584 VICQNSVPQIP 594 (637)
Q Consensus 584 VIGGpPCQ~FS 594 (637)
|+--||+.+..
T Consensus 244 Vv~dPPr~G~~ 254 (315)
T PRK03522 244 VLVNPPRRGIG 254 (315)
T ss_pred EEECCCCCCcc
Confidence 99999987653
No 27
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=96.48 E-value=0.0082 Score=57.87 Aligned_cols=77 Identities=21% Similarity=0.250 Sum_probs=54.3
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
..-++|||-||+|-+++.+.+.+-..+ ++++|+++.+....+.++...+-....+...|+.+-- ..+.||
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~-v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~---------~~~~fD 100 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAK-VTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL---------PDGKFD 100 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEE-EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC---------CTTCEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCE-EEEEcCCHHHHHHHHHHHHhcCccccccccccccccc---------ccccee
Confidence 457899999999999999999886544 8899999999999988876543221223445543211 135899
Q ss_pred EEEEcCC
Q 006634 583 FVICQNS 589 (637)
Q Consensus 583 LVIGGpP 589 (637)
+|+..||
T Consensus 101 ~Iv~NPP 107 (170)
T PF05175_consen 101 LIVSNPP 107 (170)
T ss_dssp EEEE---
T ss_pred EEEEccc
Confidence 9999999
No 28
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=96.46 E-value=0.0022 Score=66.49 Aligned_cols=52 Identities=15% Similarity=0.365 Sum_probs=48.5
Q ss_pred ccccCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhhccc
Q 006634 446 YKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL 497 (637)
Q Consensus 446 ~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lgnsfqvdtv~~~lsvL 497 (637)
=+|+.++|.|+-|++|||.++-.-.+++...||++||||.+|.+++++++.|
T Consensus 285 l~LRYFTprEvArLmgFPe~fefp~~~T~kq~YRLLGNSiNVkVV~~LIklL 336 (338)
T KOG0919|consen 285 LRLRYFTPREVARLMGFPENFEFPPETTNKQKYRLLGNSINVKVVGELIKLL 336 (338)
T ss_pred HHhhccCHHHHHHHcCCCcccCCCcchhHHHHHHHhcCcccceeHHHHHHHh
Confidence 4789999999999999999999888999999999999999999999988765
No 29
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.40 E-value=0.012 Score=60.01 Aligned_cols=82 Identities=13% Similarity=0.085 Sum_probs=56.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+.+|||+.||.|.+.+.+....-. ..++++|+++.+.+..+.+..........+...|+.+.. ..+.||
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~-~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~---------~~~~fD 177 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPD-AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL---------PGGRFD 177 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC---------CCCcee
Confidence 4578999999999999998877522 357899999999888887654111112223455552211 125799
Q ss_pred EEEEcCCCCCcC
Q 006634 583 FVICQNSVPQIP 594 (637)
Q Consensus 583 LVIGGpPCQ~FS 594 (637)
+|+.-||+-+.+
T Consensus 178 ~Iv~npPy~~~~ 189 (275)
T PRK09328 178 LIVSNPPYIPEA 189 (275)
T ss_pred EEEECCCcCCcc
Confidence 999999997765
No 30
>PHA03411 putative methyltransferase; Provisional
Probab=96.35 E-value=0.0063 Score=64.24 Aligned_cols=96 Identities=17% Similarity=0.221 Sum_probs=65.4
Q ss_pred hhhhcccchhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccc
Q 006634 482 RHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIE 561 (637)
Q Consensus 482 gnsfqvdtv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~ 561 (637)
|-.|..+.+.++| ++... .+-+||||+||+|.+.+.+....-. ..+++||+++.+.+..+..+ +...++.+
T Consensus 46 G~FfTP~~i~~~f-~~~~~--~~grVLDLGcGsGilsl~la~r~~~-~~V~gVDisp~al~~Ar~n~-----~~v~~v~~ 116 (279)
T PHA03411 46 GAFFTPEGLAWDF-TIDAH--CTGKVLDLCAGIGRLSFCMLHRCKP-EKIVCVELNPEFARIGKRLL-----PEAEWITS 116 (279)
T ss_pred eeEcCCHHHHHHH-Hhccc--cCCeEEEcCCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhC-----cCCEEEEC
Confidence 6667777888887 34332 2358999999999998777543211 24789999999988776532 22335567
Q ss_pred cccccChhhHHHhhhccCCccEEEEcCCCCCcCc
Q 006634 562 DIQALTTKKFESLIHKLGSIDFVICQNSVPQIPN 595 (637)
Q Consensus 562 DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~ 595 (637)
|+.++.. .+.||+|++-||-.....
T Consensus 117 D~~e~~~---------~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 117 DVFEFES---------NEKFDVVISNPPFGKINT 141 (279)
T ss_pred chhhhcc---------cCCCcEEEEcCCccccCc
Confidence 7765421 246999999999877543
No 31
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=96.34 E-value=0.0065 Score=44.58 Aligned_cols=36 Identities=31% Similarity=0.299 Sum_probs=30.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHH
Q 006634 78 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT 115 (637)
Q Consensus 78 ~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~ 115 (637)
.+++..|+.|||+++.+..|++.||-+ ++.-+++|+
T Consensus 2 ~~~v~~L~~mGf~~~~a~~aL~~~~~d--~~~A~~~L~ 37 (37)
T smart00165 2 EEKIDQLLEMGFSREEALKALRAANGN--VERAAEYLL 37 (37)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHC
Confidence 357889999999999999999999986 577777764
No 32
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=96.21 E-value=0.013 Score=64.40 Aligned_cols=84 Identities=12% Similarity=0.124 Sum_probs=58.4
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+-+|||||||+|.+++.|.+.+- .|+++|+++.+.+..+.+....+.....++.+|+.++ +..+....+.+|
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~----l~~~~~~~~~~D 364 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETV----LPKQPWAGQIPD 364 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHH----HHHHHhcCCCCC
Confidence 346899999999999999988763 4789999999998888776533222223456666542 111111124589
Q ss_pred EEEEcCCCCCc
Q 006634 583 FVICQNSVPQI 593 (637)
Q Consensus 583 LVIGGpPCQ~F 593 (637)
+|+--||.-+.
T Consensus 365 ~vi~dPPr~G~ 375 (431)
T TIGR00479 365 VLLLDPPRKGC 375 (431)
T ss_pred EEEECcCCCCC
Confidence 99999998663
No 33
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.21 E-value=0.014 Score=58.43 Aligned_cols=92 Identities=20% Similarity=0.276 Sum_probs=57.7
Q ss_pred hhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhH
Q 006634 493 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKF 571 (637)
Q Consensus 493 ~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~I 571 (637)
+|..|-+.+-.+-++||||||.|++.+=.-.-|. ..++.||.|..+..+++.|-...+..+ ..+...|.. .-+
T Consensus 33 lFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~----~~L 106 (187)
T COG0742 33 LFNILAPDEIEGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL----RAL 106 (187)
T ss_pred HHHhccccccCCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH----HHH
Confidence 3444555233578899999999987543334455 458899999999999998765443112 122233332 111
Q ss_pred HHhhhccCCccEEEEcCCCC
Q 006634 572 ESLIHKLGSIDFVICQNSVP 591 (637)
Q Consensus 572 e~l~~~~g~~DLVIGGpPCQ 591 (637)
.. ....+.||+|.==||=.
T Consensus 107 ~~-~~~~~~FDlVflDPPy~ 125 (187)
T COG0742 107 KQ-LGTREPFDLVFLDPPYA 125 (187)
T ss_pred Hh-cCCCCcccEEEeCCCCc
Confidence 11 12223599999999976
No 34
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.19 E-value=0.0077 Score=65.27 Aligned_cols=82 Identities=13% Similarity=0.140 Sum_probs=54.0
Q ss_pred CcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh----c---
Q 006634 505 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH----K--- 577 (637)
Q Consensus 505 l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~----~--- 577 (637)
-+|||||||.|++++++.+.. +-|++||+++.+.+..+.+-...+-....++.+|+.++-.+ +..... .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~-~~~~~~~~~~~~~~ 283 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQA-MNGVREFNRLKGID 283 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHH-Hhhccccccccccc
Confidence 469999999999999988764 35899999999999888765433211222456777553211 110000 0
Q ss_pred --cCCccEEEEcCCC
Q 006634 578 --LGSIDFVICQNSV 590 (637)
Q Consensus 578 --~g~~DLVIGGpPC 590 (637)
...+|+|+=-||=
T Consensus 284 ~~~~~~D~v~lDPPR 298 (362)
T PRK05031 284 LKSYNFSTIFVDPPR 298 (362)
T ss_pred ccCCCCCEEEECCCC
Confidence 1148999999993
No 35
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=96.19 E-value=0.017 Score=55.64 Aligned_cols=77 Identities=14% Similarity=0.168 Sum_probs=56.7
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 583 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 583 (637)
+-+||||.||.|.++..+.+.|. .++++|+++...+..+.+.... +....+...|+.+.. .+.||+
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~----------~~~fD~ 85 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLN-NVGLDVVMTDLFKGV----------RGKFDV 85 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHc-CCceEEEEccccccc----------CCcccE
Confidence 35799999999999999999885 4789999999988887765432 222223445654321 247999
Q ss_pred EEEcCCCCCcC
Q 006634 584 VICQNSVPQIP 594 (637)
Q Consensus 584 VIGGpPCQ~FS 594 (637)
|+..+|+....
T Consensus 86 Vi~n~p~~~~~ 96 (179)
T TIGR00537 86 ILFNPPYLPLE 96 (179)
T ss_pred EEECCCCCCCc
Confidence 99999997665
No 36
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=96.18 E-value=0.012 Score=56.41 Aligned_cols=76 Identities=17% Similarity=0.048 Sum_probs=55.7
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+-++||++||.|.++..+.+.+- .++++|+|+.+...++.++... ....++.+|+.++... ...+|
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~~--~~v~ii~~D~~~~~~~--------~~~~d 79 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAAA--DNLTVIHGDALKFDLP--------KLQPY 79 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhccC--CCEEEEECchhcCCcc--------ccCCC
Confidence 346899999999999999888753 4789999999999888766431 1223556777766421 12589
Q ss_pred EEEEcCCCC
Q 006634 583 FVICQNSVP 591 (637)
Q Consensus 583 LVIGGpPCQ 591 (637)
+|+|.+|=+
T Consensus 80 ~vi~n~Py~ 88 (169)
T smart00650 80 KVVGNLPYN 88 (169)
T ss_pred EEEECCCcc
Confidence 999998854
No 37
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.17 E-value=0.011 Score=65.69 Aligned_cols=84 Identities=12% Similarity=0.090 Sum_probs=58.1
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+-+|||++||.||.++.+.++.-.-..|+++|+++...+..+.+....+.....+..+|..++.. .+.||
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~---------~~~fD 320 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP---------EEQPD 320 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc---------CCCCC
Confidence 357899999999999876654210112478999999999888877654432212234566655431 24699
Q ss_pred EEEEcCCCCCcCc
Q 006634 583 FVICQNSVPQIPN 595 (637)
Q Consensus 583 LVIGGpPCQ~FS~ 595 (637)
+|+-.+||.+...
T Consensus 321 ~Vl~D~Pcsg~g~ 333 (445)
T PRK14904 321 AILLDAPCTGTGV 333 (445)
T ss_pred EEEEcCCCCCcch
Confidence 9999999988875
No 38
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.14 E-value=0.014 Score=68.64 Aligned_cols=83 Identities=18% Similarity=0.195 Sum_probs=59.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC--CCccccccccccChhhHHHhhhccCC
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~--g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
.+-+|||||||.||+++.+.+.|.. .|++||+++.+.+..+.+...++.. ...++.+|+.+. +.. ..+.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~----l~~---~~~~ 608 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAW----LKE---AREQ 608 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHH----HHH---cCCC
Confidence 3568999999999999999998863 5899999999999998887543321 122345665432 111 1257
Q ss_pred ccEEEEcCCCCCcC
Q 006634 581 IDFVICQNSVPQIP 594 (637)
Q Consensus 581 ~DLVIGGpPCQ~FS 594 (637)
||+||-=||+-.-+
T Consensus 609 fDlIilDPP~f~~~ 622 (702)
T PRK11783 609 FDLIFIDPPTFSNS 622 (702)
T ss_pred cCEEEECCCCCCCC
Confidence 99999999975543
No 39
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.13 E-value=0.015 Score=64.31 Aligned_cols=84 Identities=12% Similarity=0.177 Sum_probs=60.9
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+-+|||++||.||.+..+.+.+-. ..|+++|+++......+.+....+.. ..++.+|+.++.. . ...+.||
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~-----~-~~~~~fD 315 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQ-----W-WDGQPFD 315 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchh-----h-cccCCCC
Confidence 3578999999999999888876532 35889999999999998877654322 2345677765422 0 0124699
Q ss_pred EEEEcCCCCCcC
Q 006634 583 FVICQNSVPQIP 594 (637)
Q Consensus 583 LVIGGpPCQ~FS 594 (637)
+|+-.+||.+..
T Consensus 316 ~Vl~D~Pcs~~G 327 (427)
T PRK10901 316 RILLDAPCSATG 327 (427)
T ss_pred EEEECCCCCccc
Confidence 999999998754
No 40
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=96.07 E-value=0.012 Score=43.59 Aligned_cols=36 Identities=31% Similarity=0.351 Sum_probs=29.5
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHH
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFI 114 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I 114 (637)
..+++..|+.|||+++.+..|+..||-+ ++.=+++|
T Consensus 2 ~~~~v~~L~~mGf~~~~~~~AL~~~~~n--ve~A~~~L 37 (37)
T PF00627_consen 2 DEEKVQQLMEMGFSREQAREALRACNGN--VERAVDWL 37 (37)
T ss_dssp HHHHHHHHHHHTS-HHHHHHHHHHTTTS--HHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHhC
Confidence 3568899999999999999999999984 56777665
No 41
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=96.04 E-value=0.014 Score=64.62 Aligned_cols=85 Identities=19% Similarity=0.214 Sum_probs=59.1
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+-+|||||||.|.+++.|.+.+. .++++|+++.+.+..+.+....+.....++.+|+.+... .+....+.||
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~----~~~~~~~~fD 369 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFT----DQPWALGGFD 369 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhh----hhhhhcCCCC
Confidence 356899999999999999988763 578999999999888776543322223355677654321 1101124689
Q ss_pred EEEEcCCCCCcC
Q 006634 583 FVICQNSVPQIP 594 (637)
Q Consensus 583 LVIGGpPCQ~FS 594 (637)
+|+--||+.+..
T Consensus 370 ~Vi~dPPr~g~~ 381 (443)
T PRK13168 370 KVLLDPPRAGAA 381 (443)
T ss_pred EEEECcCCcChH
Confidence 999999987654
No 42
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=95.95 E-value=0.017 Score=42.55 Aligned_cols=36 Identities=33% Similarity=0.371 Sum_probs=31.2
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHH
Q 006634 78 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT 115 (637)
Q Consensus 78 ~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~ 115 (637)
.+++..|+.|||+++.|..|+..|+-+ ++.-+++|+
T Consensus 2 ~~~v~~L~~mGf~~~~~~~AL~~~~~d--~~~A~~~L~ 37 (38)
T cd00194 2 EEKLEQLLEMGFSREEARKALRATNNN--VERAVEWLL 37 (38)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHh
Confidence 357889999999999999999999985 577788876
No 43
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.87 E-value=0.022 Score=57.35 Aligned_cols=72 Identities=22% Similarity=0.291 Sum_probs=57.3
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+-+|+||=||+|=+.+|..-+|- ..|++||+|+.+..+.+.+-.. .-| ..+...||+++. +.+
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~-----------~~~ 109 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR-----------GKF 109 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcC-----------Ccc
Confidence 456799999999999999999996 4689999999999999986543 122 224567777655 478
Q ss_pred cEEEEcCC
Q 006634 582 DFVICQNS 589 (637)
Q Consensus 582 DLVIGGpP 589 (637)
|.||--||
T Consensus 110 dtvimNPP 117 (198)
T COG2263 110 DTVIMNPP 117 (198)
T ss_pred ceEEECCC
Confidence 99999888
No 44
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=95.85 E-value=0.019 Score=63.58 Aligned_cols=85 Identities=18% Similarity=0.266 Sum_probs=59.6
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+-+|||++||.||.++.+.++ |-. -.++++|+++...+..+.+....+.....+..+|+.++.. .+ .+.|
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~-~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~-~~------~~~f 321 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNT-GKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHE-KF------AEKF 321 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccc-hh------cccC
Confidence 3568999999999999887664 211 2478999999998888877654432222345677765431 11 1479
Q ss_pred cEEEEcCCCCCcCc
Q 006634 582 DFVICQNSVPQIPN 595 (637)
Q Consensus 582 DLVIGGpPCQ~FS~ 595 (637)
|+|+-.+||.++..
T Consensus 322 D~Vl~D~Pcsg~G~ 335 (444)
T PRK14902 322 DKILVDAPCSGLGV 335 (444)
T ss_pred CEEEEcCCCCCCee
Confidence 99999999987754
No 45
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=95.69 E-value=0.027 Score=45.89 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=52.0
Q ss_pred cccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEE
Q 006634 506 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI 585 (637)
Q Consensus 506 ~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVI 585 (637)
+++|+.||.|++...+.+.+ ...++++|+++.+....+............++..|+.+... ...+.+|+|+
T Consensus 1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~d~i~ 71 (107)
T cd02440 1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP-------EADESFDVII 71 (107)
T ss_pred CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc-------ccCCceEEEE
Confidence 57999999999998888733 24678999999887766532211111122234456554432 1236799999
Q ss_pred EcCCCCCc
Q 006634 586 CQNSVPQI 593 (637)
Q Consensus 586 GGpPCQ~F 593 (637)
..+||..+
T Consensus 72 ~~~~~~~~ 79 (107)
T cd02440 72 SDPPLHHL 79 (107)
T ss_pred Eccceeeh
Confidence 99998874
No 46
>PRK14967 putative methyltransferase; Provisional
Probab=95.62 E-value=0.023 Score=56.89 Aligned_cols=78 Identities=18% Similarity=0.187 Sum_probs=53.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+-+|||++||.|.+.+.+.+.|. ..++++|+++.+.+..+.+....+ ....++.+|+.+. + ..+.||
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~-~~~~~~~~d~~~~----~-----~~~~fD 103 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAG-VDVDVRRGDWARA----V-----EFRPFD 103 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhC-CeeEEEECchhhh----c-----cCCCee
Confidence 356899999999999998888875 357899999998887776554322 1122344555431 1 125799
Q ss_pred EEEEcCCCCC
Q 006634 583 FVICQNSVPQ 592 (637)
Q Consensus 583 LVIGGpPCQ~ 592 (637)
+|+..||-..
T Consensus 104 ~Vi~npPy~~ 113 (223)
T PRK14967 104 VVVSNPPYVP 113 (223)
T ss_pred EEEECCCCCC
Confidence 9999987443
No 47
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=95.58 E-value=0.027 Score=62.31 Aligned_cols=89 Identities=15% Similarity=0.150 Sum_probs=59.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+-+|||++||.||.+..+.++.-.--.++++|+++...+.++.+....+.....+...|..++.... ....+.||
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~----~~~~~~fD 327 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELK----PQWRGYFD 327 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccc----ccccccCC
Confidence 35789999999999998887652111247899999998888887665443222234456766543110 00124699
Q ss_pred EEEEcCCCCCcCc
Q 006634 583 FVICQNSVPQIPN 595 (637)
Q Consensus 583 LVIGGpPCQ~FS~ 595 (637)
.|+-.+||.+...
T Consensus 328 ~Vl~DaPCSg~G~ 340 (434)
T PRK14901 328 RILLDAPCSGLGT 340 (434)
T ss_pred EEEEeCCCCcccc
Confidence 9999999988553
No 48
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.58 E-value=0.033 Score=59.24 Aligned_cols=80 Identities=13% Similarity=0.085 Sum_probs=55.6
Q ss_pred CcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCccE
Q 006634 505 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDF 583 (637)
Q Consensus 505 l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 583 (637)
.+|||+.||.|.+.+.+....-. ..++++|+++.+.+..+.+....+... ..++.+|+.+. + ..+.||+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~-~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~----l-----~~~~fDl 204 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD-AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA----L-----PGRRYDL 204 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh----C-----CCCCccE
Confidence 58999999999999998776422 357899999999998888765432111 22345555321 1 1136999
Q ss_pred EEEcCCCCCcC
Q 006634 584 VICQNSVPQIP 594 (637)
Q Consensus 584 VIGGpPCQ~FS 594 (637)
|+.-||+-+..
T Consensus 205 IvsNPPyi~~~ 215 (307)
T PRK11805 205 IVSNPPYVDAE 215 (307)
T ss_pred EEECCCCCCcc
Confidence 99999987654
No 49
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.53 E-value=0.016 Score=64.71 Aligned_cols=77 Identities=17% Similarity=0.163 Sum_probs=52.9
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCcc
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
+-+|+|||||+|+|++.|-+.. +-|.+||+++.+....+.+-.. |+.. ..++.+|..++...-- ....+|
T Consensus 294 ~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~-n~i~N~~f~~~~ae~~~~~~~-----~~~~~d 364 (432)
T COG2265 294 GERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAA-NGIDNVEFIAGDAEEFTPAWW-----EGYKPD 364 (432)
T ss_pred CCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHH-cCCCcEEEEeCCHHHHhhhcc-----ccCCCC
Confidence 4689999999999999998655 4589999999999888776543 3322 3344455544433211 113678
Q ss_pred EEEEcCC
Q 006634 583 FVICQNS 589 (637)
Q Consensus 583 LVIGGpP 589 (637)
+|+==||
T Consensus 365 ~VvvDPP 371 (432)
T COG2265 365 VVVVDPP 371 (432)
T ss_pred EEEECCC
Confidence 8888777
No 50
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=95.48 E-value=0.056 Score=57.38 Aligned_cols=83 Identities=23% Similarity=0.299 Sum_probs=54.6
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-C-CccccccccccChhhHHHhhhccCC
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-G-ELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g-~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
.+-+||+|||=.||+++..-..|. +-|++||.++.+....+.++.-++.. . ..++..|+-+. +.. +.+.+.
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA--~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~----l~~-~~~~~~ 195 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGA--KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKF----LKR-LKKGGR 195 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTE--SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHH----HHH-HHHTT-
T ss_pred CCCceEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH----HHH-HhcCCC
Confidence 356999999999999999999996 45889999999999988887644322 1 12344555432 211 223468
Q ss_pred ccEEEEcCCCCCcC
Q 006634 581 IDFVICQNSVPQIP 594 (637)
Q Consensus 581 ~DLVIGGpPCQ~FS 594 (637)
||+||-=|| .|+
T Consensus 196 fD~IIlDPP--sF~ 207 (286)
T PF10672_consen 196 FDLIILDPP--SFA 207 (286)
T ss_dssp EEEEEE--S--SEE
T ss_pred CCEEEECCC--CCC
Confidence 999999999 565
No 51
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=95.43 E-value=0.019 Score=62.01 Aligned_cols=81 Identities=19% Similarity=0.210 Sum_probs=45.2
Q ss_pred cccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChh-----h---HHHhhhc
Q 006634 506 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTK-----K---FESLIHK 577 (637)
Q Consensus 506 ~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~-----~---Ie~l~~~ 577 (637)
++||||||+|.+++.|...+ +-|++||+++.+.+.-+.+-...+-....++..+..++... . +......
T Consensus 199 ~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~ 275 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLK 275 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GG
T ss_pred cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhh
Confidence 79999999999999997765 46899999999988777665433222222334444433221 0 1100011
Q ss_pred cCCccEEEEcCC
Q 006634 578 LGSIDFVICQNS 589 (637)
Q Consensus 578 ~g~~DLVIGGpP 589 (637)
...+|+|+==||
T Consensus 276 ~~~~d~vilDPP 287 (352)
T PF05958_consen 276 SFKFDAVILDPP 287 (352)
T ss_dssp CTTESEEEE---
T ss_pred hcCCCEEEEcCC
Confidence 226899998888
No 52
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=95.40 E-value=0.035 Score=55.50 Aligned_cols=82 Identities=15% Similarity=0.148 Sum_probs=57.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+.+|||+.||.|.+...+.+..-. ..++++|+++.+.+..+.+....+.....+..+|+.+.- ..+.+|
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---------~~~~fD 156 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPD-ARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL---------PGGKFD 156 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC---------cCCcee
Confidence 4568999999999999988876322 257899999999988877665432221224455654311 125799
Q ss_pred EEEEcCCCCCcC
Q 006634 583 FVICQNSVPQIP 594 (637)
Q Consensus 583 LVIGGpPCQ~FS 594 (637)
+|+.-||+...+
T Consensus 157 ~Vi~npPy~~~~ 168 (251)
T TIGR03534 157 LIVSNPPYIPEA 168 (251)
T ss_pred EEEECCCCCchh
Confidence 999999988765
No 53
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=95.27 E-value=0.034 Score=61.06 Aligned_cols=76 Identities=21% Similarity=0.227 Sum_probs=51.7
Q ss_pred CCcccccCCCCChHHHHHH-HcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 504 GLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~-~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
+.+|||+|||+|.+++-+. .+|. ..|+++|+++.+.+..+.+....+.....+..+|+..+ +...+.||
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~--~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~--------l~~~~~fD 127 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGV--EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANAL--------LHEERKFD 127 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHH--------HhhcCCCC
Confidence 3689999999999998874 4564 45899999999999998876533222222344554332 11124689
Q ss_pred EEEEcCC
Q 006634 583 FVICQNS 589 (637)
Q Consensus 583 LVIGGpP 589 (637)
+|+-=||
T Consensus 128 ~V~lDP~ 134 (382)
T PRK04338 128 VVDIDPF 134 (382)
T ss_pred EEEECCC
Confidence 9988766
No 54
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=95.26 E-value=0.043 Score=61.00 Aligned_cols=85 Identities=14% Similarity=0.269 Sum_probs=59.5
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+-+|||++||.||.++.+..+ |-. -.|+++|+++...+.++.+....+.....+...|.+++.. . ..+.|
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~-----~--~~~~f 308 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQ-GKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTE-----Y--VQDTF 308 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhh-----h--hhccC
Confidence 3568999999999999877664 111 2478999999999999887665432222244566654431 1 12469
Q ss_pred cEEEEcCCCCCcCc
Q 006634 582 DFVICQNSVPQIPN 595 (637)
Q Consensus 582 DLVIGGpPCQ~FS~ 595 (637)
|.|+-=+||.++..
T Consensus 309 D~Vl~DaPCsg~G~ 322 (431)
T PRK14903 309 DRILVDAPCTSLGT 322 (431)
T ss_pred CEEEECCCCCCCcc
Confidence 99999999998875
No 55
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=95.18 E-value=0.027 Score=41.29 Aligned_cols=34 Identities=32% Similarity=0.423 Sum_probs=27.3
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhh
Q 006634 151 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKI 186 (637)
Q Consensus 151 ~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I 186 (637)
+++..|+.|||++++|..|+.+||-| ++.-++.+
T Consensus 3 ~~v~~L~~mGf~~~~a~~aL~~~~~d--~~~A~~~L 36 (37)
T smart00165 3 EKIDQLLEMGFSREEALKALRAANGN--VERAAEYL 36 (37)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHH
Confidence 45669999999999999999999987 55444443
No 56
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=95.13 E-value=0.033 Score=60.31 Aligned_cols=85 Identities=9% Similarity=0.074 Sum_probs=55.1
Q ss_pred CcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHH--h--hh----
Q 006634 505 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES--L--IH---- 576 (637)
Q Consensus 505 l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~--l--~~---- 576 (637)
-+|||||||+|.+++.|.+.. +.|++||+++.+.+..+.+....+-....++.+|+.++-...... + ..
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL 275 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence 369999999999999888764 358999999999999988765432212224566765542211000 0 00
Q ss_pred ccCCccEEEEcCCCCC
Q 006634 577 KLGSIDFVICQNSVPQ 592 (637)
Q Consensus 577 ~~g~~DLVIGGpPCQ~ 592 (637)
....+|+|+=-||=.+
T Consensus 276 ~~~~~d~v~lDPPR~G 291 (353)
T TIGR02143 276 KSYNCSTIFVDPPRAG 291 (353)
T ss_pred ccCCCCEEEECCCCCC
Confidence 0013799999999433
No 57
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=95.12 E-value=0.096 Score=57.96 Aligned_cols=106 Identities=20% Similarity=0.236 Sum_probs=74.3
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCC--ccccccccccChhhHHHhhhccCCc
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE--LVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~--l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
|=+||+|||=.|||++..-..|- .-|++||+++.+...-+.+..-++..+. .++.+|+-+. |.....+-..|
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~----l~~~~~~g~~f 291 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKW----LRKAERRGEKF 291 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHH----HHHHHhcCCcc
Confidence 77899999999999999999998 3578999999999988887764433221 2445555432 22222222489
Q ss_pred cEEEEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 006634 582 DFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 635 (637)
Q Consensus 582 DLVIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK~~ 635 (637)
||||-=|| .|+.+ + ++ . .+++..|.+++.....+
T Consensus 292 DlIilDPP--sF~r~------k--------~~---~-~~~~rdy~~l~~~~~~i 325 (393)
T COG1092 292 DLIILDPP--SFARS------K--------KQ---E-FSAQRDYKDLNDLALRL 325 (393)
T ss_pred cEEEECCc--ccccC------c--------cc---c-hhHHHHHHHHHHHHHHH
Confidence 99999999 56631 1 11 2 66888898888876544
No 58
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=95.07 E-value=0.046 Score=56.35 Aligned_cols=96 Identities=15% Similarity=0.081 Sum_probs=63.2
Q ss_pred Hhhhhhhccc--chhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCC
Q 006634 479 ESLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE 556 (637)
Q Consensus 479 k~Lgnsfqvd--tv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~ 556 (637)
|.||-.|=+| ++....+.+. ...+-+|||+-||.|.++..+.+.+. -++++|+|+.....++..... ....
T Consensus 5 k~~GQnfl~d~~~~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~--~~~v 77 (258)
T PRK14896 5 KKLGQHFLIDDRVVDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIA--AGNV 77 (258)
T ss_pred CcCCccccCCHHHHHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhcc--CCCE
Confidence 3445555333 3333333332 12457899999999999999999874 378999999998888765432 1122
Q ss_pred ccccccccccChhhHHHhhhccCCccEEEEcCCCC
Q 006634 557 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP 591 (637)
Q Consensus 557 l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ 591 (637)
.++.+|+.++.- ..+|+|+|-+|=+
T Consensus 78 ~ii~~D~~~~~~----------~~~d~Vv~NlPy~ 102 (258)
T PRK14896 78 EIIEGDALKVDL----------PEFNKVVSNLPYQ 102 (258)
T ss_pred EEEEeccccCCc----------hhceEEEEcCCcc
Confidence 356778876542 2468999987744
No 59
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=94.92 E-value=0.028 Score=63.48 Aligned_cols=88 Identities=11% Similarity=0.029 Sum_probs=52.8
Q ss_pred CCCcccccCCCCChHHHHHHHcC--------CceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHh
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLG--------IKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL 574 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aG--------i~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l 574 (637)
...+|+|..||.|+|-+++.... +. ..++++|||+.+....+..+...+..+..++.+|.-.-+....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~-~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~--- 106 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVE-LNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNI--- 106 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccce-eeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccc---
Confidence 45799999999999988875422 22 4578999999998877765543321111122222111000000
Q ss_pred hhccCCccEEEEcCCCCCcC
Q 006634 575 IHKLGSIDFVICQNSVPQIP 594 (637)
Q Consensus 575 ~~~~g~~DLVIGGpPCQ~FS 594 (637)
....+.||+|||=||=-...
T Consensus 107 ~~~~~~fD~IIgNPPy~~~k 126 (524)
T TIGR02987 107 ESYLDLFDIVITNPPYGRLK 126 (524)
T ss_pred ccccCcccEEEeCCCccccC
Confidence 01236899999999976543
No 60
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=94.91 E-value=0.066 Score=56.22 Aligned_cols=81 Identities=12% Similarity=0.071 Sum_probs=56.3
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCcc
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
..+|||++||.|.+.+.+.+..-.. .++++|+++.+.+..+.+....+... ..+..+|+.+. + ..+.||
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~-~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~----~-----~~~~fD 191 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEA-EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA----L-----PGRKYD 191 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc----c-----CCCCcc
Confidence 4689999999999999998764222 47899999999988887764332111 12345565321 1 113699
Q ss_pred EEEEcCCCCCcC
Q 006634 583 FVICQNSVPQIP 594 (637)
Q Consensus 583 LVIGGpPCQ~FS 594 (637)
+|+.-||+-+.+
T Consensus 192 ~Iv~NPPy~~~~ 203 (284)
T TIGR03533 192 LIVSNPPYVDAE 203 (284)
T ss_pred EEEECCCCCCcc
Confidence 999999997655
No 61
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=94.65 E-value=0.045 Score=40.55 Aligned_cols=26 Identities=38% Similarity=0.516 Sum_probs=22.7
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhhCCC
Q 006634 151 EITLQLLEMGFSENQVSLAIEKFGSK 176 (637)
Q Consensus 151 ~k~~~L~~MGfseeEas~Ai~r~G~d 176 (637)
+++..|+.|||+++++..|+.+||-+
T Consensus 4 ~~v~~L~~mGf~~~~~~~AL~~~~~n 29 (37)
T PF00627_consen 4 EKVQQLMEMGFSREQAREALRACNGN 29 (37)
T ss_dssp HHHHHHHHHTS-HHHHHHHHHHTTTS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence 56779999999999999999999984
No 62
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=94.55 E-value=0.083 Score=54.97 Aligned_cols=94 Identities=17% Similarity=0.134 Sum_probs=63.2
Q ss_pred hhhhhhccc--chhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCc
Q 006634 480 SLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL 557 (637)
Q Consensus 480 ~Lgnsfqvd--tv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l 557 (637)
.+|..|-++ .+...+..+. ...+-+|||+=||.|.++..|.+.|- -++++|+|+.....++..+.. ....
T Consensus 19 ~~gq~fl~~~~i~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~---~~v~ 90 (272)
T PRK00274 19 SLGQNFLIDENILDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAE---DNLT 90 (272)
T ss_pred ccCcCcCCCHHHHHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhcc---CceE
Confidence 345544333 3333344332 23457899999999999999998874 478999999998888765422 2334
Q ss_pred cccccccccChhhHHHhhhccCCccEEEEcCC
Q 006634 558 VQIEDIQALTTKKFESLIHKLGSIDFVICQNS 589 (637)
Q Consensus 558 ~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpP 589 (637)
++.+|+.++.-..+ ..++|+|-+|
T Consensus 91 ~i~~D~~~~~~~~~--------~~~~vv~NlP 114 (272)
T PRK00274 91 IIEGDALKVDLSEL--------QPLKVVANLP 114 (272)
T ss_pred EEEChhhcCCHHHc--------CcceEEEeCC
Confidence 56788887753221 1588999888
No 63
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=94.31 E-value=0.12 Score=57.14 Aligned_cols=84 Identities=13% Similarity=0.118 Sum_probs=57.8
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCcc--ccccccccChhhHHHhhhccC
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELV--QIEDIQALTTKKFESLIHKLG 579 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~--~~~DI~~Lt~~~Ie~l~~~~g 579 (637)
.+-+|||++||.||.+.-+.++ + . -.++++|+++...+..+.+....+.. ..+ ..+|...+.. ....+
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~-~-~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v~~~~~d~~~~~~------~~~~~ 308 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAP-Q-AQVVALDIHEHRLKRVYENLKRLGLT-IKAETKDGDGRGPSQ------WAENE 308 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcC-C-CeEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeccccccccc------ccccc
Confidence 3578999999999999887764 3 2 24789999999998888876544221 111 2344432221 00124
Q ss_pred CccEEEEcCCCCCcCc
Q 006634 580 SIDFVICQNSVPQIPN 595 (637)
Q Consensus 580 ~~DLVIGGpPCQ~FS~ 595 (637)
.||.|+-.+||.++..
T Consensus 309 ~fD~VllDaPcSg~G~ 324 (426)
T TIGR00563 309 QFDRILLDAPCSATGV 324 (426)
T ss_pred ccCEEEEcCCCCCCcc
Confidence 7999999999999875
No 64
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=94.30 E-value=0.08 Score=54.23 Aligned_cols=75 Identities=17% Similarity=0.112 Sum_probs=54.3
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+-+|||+.||.|.++..|.+.+- .++++|+|+.....++..+.. .....++.+|+.++.... +...+
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~~-------~d~~~ 96 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLPD-------FPKQL 96 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChhH-------cCCcc
Confidence 457899999999999999999884 378999999999888765532 122235677887765321 11124
Q ss_pred EEEEcCC
Q 006634 583 FVICQNS 589 (637)
Q Consensus 583 LVIGGpP 589 (637)
+|+|..|
T Consensus 97 ~vvsNlP 103 (253)
T TIGR00755 97 KVVSNLP 103 (253)
T ss_pred eEEEcCC
Confidence 8888887
No 65
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=94.29 E-value=0.13 Score=51.02 Aligned_cols=55 Identities=20% Similarity=0.143 Sum_probs=40.7
Q ss_pred hhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhh
Q 006634 492 YHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 549 (637)
Q Consensus 492 ~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~ 549 (637)
.++..|......+.+|||+.||.|.+...+...+. .++++|+++.+....+....
T Consensus 44 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~ 98 (219)
T TIGR02021 44 KLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQ 98 (219)
T ss_pred HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHH
Confidence 34444442122467899999999999999988875 46899999999887766543
No 66
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=94.26 E-value=0.083 Score=55.12 Aligned_cols=102 Identities=19% Similarity=0.239 Sum_probs=62.3
Q ss_pred hhhhcccchhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-Ccccc
Q 006634 482 RHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQI 560 (637)
Q Consensus 482 gnsfqvdtv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~ 560 (637)
+.++++|.+ +|.-.-.. +..-+||||-||+|.+.+.+.+-==+ .-+++||+++.+..--+++-..++-.. ..++.
T Consensus 26 ~~~~~~Dai--LL~~~~~~-~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~ 101 (248)
T COG4123 26 GFRYGTDAI--LLAAFAPV-PKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIE 101 (248)
T ss_pred ccccccHHH--HHHhhccc-ccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEeh
Confidence 456677743 22222221 22678999999999999988765212 236899999998776655433221111 12456
Q ss_pred ccccccChhhHHHhhhccCCccEEEEcCCCCCc
Q 006634 561 EDIQALTTKKFESLIHKLGSIDFVICQNSVPQI 593 (637)
Q Consensus 561 ~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~F 593 (637)
.||.++.... .+..||+||.-||=-.-
T Consensus 102 ~Di~~~~~~~------~~~~fD~Ii~NPPyf~~ 128 (248)
T COG4123 102 ADIKEFLKAL------VFASFDLIICNPPYFKQ 128 (248)
T ss_pred hhHHHhhhcc------cccccCEEEeCCCCCCC
Confidence 7776654321 23469999999985443
No 67
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=94.25 E-value=0.16 Score=50.72 Aligned_cols=84 Identities=21% Similarity=0.197 Sum_probs=55.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+-+|||+.||.|.++..|.+..-+--.|+++|+++......+.+....+.....+..+|..+.-. ..+.||
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~--------~~~~fD 148 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE--------PLAPYD 148 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc--------ccCCCC
Confidence 467999999999999988876532111378999999988877776654332222344566643211 124799
Q ss_pred EEEEcCCCCCcC
Q 006634 583 FVICQNSVPQIP 594 (637)
Q Consensus 583 LVIGGpPCQ~FS 594 (637)
+|+-.+++....
T Consensus 149 ~Ii~~~~~~~~~ 160 (215)
T TIGR00080 149 RIYVTAAGPKIP 160 (215)
T ss_pred EEEEcCCccccc
Confidence 999777766543
No 68
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=94.14 E-value=0.046 Score=53.63 Aligned_cols=79 Identities=19% Similarity=0.177 Sum_probs=46.2
Q ss_pred CCCcccccCCCCChHHH--HHHHcCCc------eeeEEEeecCHHHHHHHHHHhhhcCCCCC-ccccccccccChhhHHH
Q 006634 503 GGLTMLSVFSGIGGAEV--TLHRLGIK------LKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFES 573 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlsl--GL~~aGi~------~k~vvaVEid~~a~~t~r~~~~~tn~~g~-l~~~~DI~~Lt~~~Ie~ 573 (637)
.+-.|||-|||.|++-+ ++....+. ...++++||++.+.+.-+.+....+.... .+...|.+++.
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~------ 101 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP------ 101 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG------
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc------
Confidence 46789999999999864 34444432 00167999999998888777654432211 12344555554
Q ss_pred hhhccCCccEEEEcCC
Q 006634 574 LIHKLGSIDFVICQNS 589 (637)
Q Consensus 574 l~~~~g~~DLVIGGpP 589 (637)
...+.+|+||.=||
T Consensus 102 --~~~~~~d~IvtnPP 115 (179)
T PF01170_consen 102 --LPDGSVDAIVTNPP 115 (179)
T ss_dssp --GTTSBSCEEEEE--
T ss_pred --cccCCCCEEEECcc
Confidence 12357999999988
No 69
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=94.13 E-value=0.11 Score=54.37 Aligned_cols=80 Identities=14% Similarity=0.074 Sum_probs=55.7
Q ss_pred CcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCccE
Q 006634 505 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDF 583 (637)
Q Consensus 505 l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 583 (637)
.+||||+||.|.+.+.+....-.. .++++|+++.+.+..+.+....+... ..++.+|+.+- +. ...||+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~-~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~----~~-----~~~fDl 185 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNA-EVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP----LA-----GQKIDI 185 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc----Cc-----CCCccE
Confidence 589999999999999988764222 47899999999988887764332211 22344555321 10 126999
Q ss_pred EEEcCCCCCcC
Q 006634 584 VICQNSVPQIP 594 (637)
Q Consensus 584 VIGGpPCQ~FS 594 (637)
|+.-||.-+.+
T Consensus 186 IvsNPPyi~~~ 196 (284)
T TIGR00536 186 IVSNPPYIDEE 196 (284)
T ss_pred EEECCCCCCcc
Confidence 99999998765
No 70
>PRK14968 putative methyltransferase; Provisional
Probab=93.96 E-value=0.17 Score=48.18 Aligned_cols=78 Identities=15% Similarity=0.108 Sum_probs=52.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g--~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
.+-++||+.||.|.+...+.+.|. .++++|+++.+....+++....+... ..+...|..+- +. .+.
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~~-----~~~ 90 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGK---KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP----FR-----GDK 90 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcc---eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc----cc-----ccC
Confidence 456899999999999999988864 46899999988777766543322111 22334554321 11 126
Q ss_pred ccEEEEcCCCCC
Q 006634 581 IDFVICQNSVPQ 592 (637)
Q Consensus 581 ~DLVIGGpPCQ~ 592 (637)
+|+|+..+|+..
T Consensus 91 ~d~vi~n~p~~~ 102 (188)
T PRK14968 91 FDVILFNPPYLP 102 (188)
T ss_pred ceEEEECCCcCC
Confidence 999999998754
No 71
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=93.93 E-value=0.093 Score=57.58 Aligned_cols=77 Identities=12% Similarity=0.073 Sum_probs=48.8
Q ss_pred CCcccccCCCCChHHHHHHHc--CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634 504 GLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~a--Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
+++|||+|||+|-..+-+..- |. +.|+++|+|+.+.+.++.+....+.....+...|...+-. .....|
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga--~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~-------~~~~~f 115 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGV--REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLR-------YRNRKF 115 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHH-------HhCCCC
Confidence 589999999999776555443 65 4689999999999999987743321111233344432211 112357
Q ss_pred cEEEEcCC
Q 006634 582 DFVICQNS 589 (637)
Q Consensus 582 DLVIGGpP 589 (637)
|+|.==||
T Consensus 116 DvIdlDPf 123 (374)
T TIGR00308 116 HVIDIDPF 123 (374)
T ss_pred CEEEeCCC
Confidence 88876554
No 72
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=93.88 E-value=0.085 Score=38.78 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=27.9
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhh
Q 006634 151 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIF 187 (637)
Q Consensus 151 ~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~ 187 (637)
+++..|+.|||+++++..|+.+|+-| ++.-++.|+
T Consensus 3 ~~v~~L~~mGf~~~~~~~AL~~~~~d--~~~A~~~L~ 37 (38)
T cd00194 3 EKLEQLLEMGFSREEARKALRATNNN--VERAVEWLL 37 (38)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHh
Confidence 45669999999999999999999985 555555543
No 73
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=93.83 E-value=0.096 Score=55.15 Aligned_cols=78 Identities=15% Similarity=0.245 Sum_probs=56.7
Q ss_pred cccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEE
Q 006634 506 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI 585 (637)
Q Consensus 506 ~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVI 585 (637)
+|+||.||.|-+.+++...+-. -.|+++||++.|.++-+.+....+- .++..+.. ++-. .-.+.||+|+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l-------~~~~~~~~-dlf~--~~~~~fDlIV 181 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGL-------VRVLVVQS-DLFE--PLRGKFDLIV 181 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCC-------ccEEEEee-eccc--ccCCceeEEE
Confidence 7999999999999999988754 3678999999999988887654431 12333333 2211 1235899999
Q ss_pred EcCCCCCcC
Q 006634 586 CQNSVPQIP 594 (637)
Q Consensus 586 GGpPCQ~FS 594 (637)
.-||==+-.
T Consensus 182 sNPPYip~~ 190 (280)
T COG2890 182 SNPPYIPAE 190 (280)
T ss_pred eCCCCCCCc
Confidence 999977766
No 74
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=93.82 E-value=0.13 Score=55.65 Aligned_cols=98 Identities=21% Similarity=0.237 Sum_probs=60.2
Q ss_pred Hhhhhhhcccch----hhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC
Q 006634 479 ESLRHCFQTDTL----GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT 554 (637)
Q Consensus 479 k~Lgnsfqvdtv----~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~ 554 (637)
..+...|+.+.+ +.+++.|.... . -+||||.||.|.+...+.+.+=.. .++++|+++.+.+.-+.+....+-.
T Consensus 170 ~~~pgvFs~~~lD~gt~lLl~~l~~~~-~-g~VLDlGCG~G~ls~~la~~~p~~-~v~~vDis~~Al~~A~~nl~~n~l~ 246 (342)
T PRK09489 170 KTLPGVFSRDGLDVGSQLLLSTLTPHT-K-GKVLDVGCGAGVLSAVLARHSPKI-RLTLSDVSAAALESSRATLAANGLE 246 (342)
T ss_pred EeCCCCCCCCCCCHHHHHHHHhccccC-C-CeEEEeccCcCHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHHHHHcCCC
Confidence 334445544333 33355444322 2 379999999999998888764222 3789999999988877766543222
Q ss_pred CCccccccccccChhhHHHhhhccCCccEEEEcCCC
Q 006634 555 GELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV 590 (637)
Q Consensus 555 g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPC 590 (637)
+ .+...|+.. .+ .+.||+|+..||=
T Consensus 247 ~-~~~~~D~~~----~~------~~~fDlIvsNPPF 271 (342)
T PRK09489 247 G-EVFASNVFS----DI------KGRFDMIISNPPF 271 (342)
T ss_pred C-EEEEccccc----cc------CCCccEEEECCCc
Confidence 2 233344421 01 2579999998883
No 75
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=93.65 E-value=0.19 Score=43.81 Aligned_cols=74 Identities=23% Similarity=0.334 Sum_probs=52.2
Q ss_pred CCcccccCCCCChHHHHHHH--cCCceeeEEEeecCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCC
Q 006634 504 GLTMLSVFSGIGGAEVTLHR--LGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~--aGi~~k~vvaVEid~~a~~t~r~~~~~tn~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
+-+||||=||.|.+...+.+ .|.+ +++||+++...+..+........ ....++.+|+ .... ...++
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~-------~~~~~ 70 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGAR---VVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDP-------DFLEP 70 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSE---EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGT-------TTSSC
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCE---EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCc-------ccCCC
Confidence 45799999999999999999 7764 78999999999988887632221 2223456777 2211 12357
Q ss_pred ccEEEEcC
Q 006634 581 IDFVICQN 588 (637)
Q Consensus 581 ~DLVIGGp 588 (637)
+|+|+...
T Consensus 71 ~D~v~~~~ 78 (112)
T PF12847_consen 71 FDLVICSG 78 (112)
T ss_dssp EEEEEECS
T ss_pred CCEEEECC
Confidence 99998655
No 76
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=93.49 E-value=0.26 Score=43.31 Aligned_cols=76 Identities=20% Similarity=0.187 Sum_probs=48.2
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+.+|+||.||.|.+..-+.+..=. ..++++|+++...+..+.+....+.....+..+|+...... ..+.+|
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~D 90 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED-------SLPEPD 90 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh-------hcCCCC
Confidence 3468999999999999888765211 34789999999988887765433222222334554422110 124688
Q ss_pred EEEE
Q 006634 583 FVIC 586 (637)
Q Consensus 583 LVIG 586 (637)
+|+-
T Consensus 91 ~v~~ 94 (124)
T TIGR02469 91 RVFI 94 (124)
T ss_pred EEEE
Confidence 8875
No 77
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=93.42 E-value=0.17 Score=53.15 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=39.2
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhh
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 550 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~ 550 (637)
.+-+|||+.||.|.+++++.++|. ..++++|+++.+.+..+.+...
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~ 204 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAEL 204 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHH
Confidence 457899999999999999999986 4688999999998888776643
No 78
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=93.41 E-value=0.074 Score=55.62 Aligned_cols=107 Identities=18% Similarity=0.108 Sum_probs=54.7
Q ss_pred HhhhhhhcccchhhhhccccccCCCCCcccccCCCCChHHHHHHHc------CCceeeEEEeecCHHHHHHHHHHhhhcC
Q 006634 479 ESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL------GIKLKGVISIETSETNRRILKRWWESSG 552 (637)
Q Consensus 479 k~Lgnsfqvdtv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~a------Gi~~k~vvaVEid~~a~~t~r~~~~~tn 552 (637)
|.+|..|....++.++.-+-... .+-+|+|.+||.|||-+++.+. -+.-..++++|+++.+..+.+.+..-++
T Consensus 23 k~~G~~~TP~~i~~l~~~~~~~~-~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~ 101 (311)
T PF02384_consen 23 KKLGQFYTPREIVDLMVKLLNPK-KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG 101 (311)
T ss_dssp TSCGGC---HHHHHHHHHHHTT--TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT
T ss_pred cccceeehHHHHHHHHHhhhhcc-ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc
Confidence 44566666666666654444332 3568999999999998877651 0112357899999999876554322111
Q ss_pred CCCC--ccccccccccChhhHHHhhh-ccCCccEEEEcCCCCCc
Q 006634 553 QTGE--LVQIEDIQALTTKKFESLIH-KLGSIDFVICQNSVPQI 593 (637)
Q Consensus 553 ~~g~--l~~~~DI~~Lt~~~Ie~l~~-~~g~~DLVIGGpPCQ~F 593 (637)
-... .+..+|. +..... ....+|+|+|-||=-..
T Consensus 102 ~~~~~~~i~~~d~-------l~~~~~~~~~~~D~ii~NPPf~~~ 138 (311)
T PF02384_consen 102 IDNSNINIIQGDS-------LENDKFIKNQKFDVIIGNPPFGSK 138 (311)
T ss_dssp HHCBGCEEEES-T-------TTSHSCTST--EEEEEEE--CTCE
T ss_pred ccccccccccccc-------ccccccccccccccccCCCCcccc
Confidence 0011 1223332 111111 13579999999996655
No 79
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=93.10 E-value=0.33 Score=48.28 Aligned_cols=82 Identities=18% Similarity=0.208 Sum_probs=53.6
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+-+|||+.||.|.+...+.+. |-. ..++++|+++...+..+......+.....++.+|+.++.. ..+.+
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~f 115 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPE-GHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPF--------DDNSF 115 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCC--------CCCCc
Confidence 4578999999999998887654 322 2478999999988777665432222222234566655431 12479
Q ss_pred cEEEEcCCCCCc
Q 006634 582 DFVICQNSVPQI 593 (637)
Q Consensus 582 DLVIGGpPCQ~F 593 (637)
|+|+-+...+.+
T Consensus 116 D~V~~~~~l~~~ 127 (231)
T TIGR02752 116 DYVTIGFGLRNV 127 (231)
T ss_pred cEEEEecccccC
Confidence 999987766554
No 80
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=93.09 E-value=0.2 Score=49.30 Aligned_cols=75 Identities=12% Similarity=0.125 Sum_probs=51.1
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 583 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 583 (637)
+.+|||+-||.|-+++.+..++-. ..|+++|+++......+.+..+.+.....++.+|+.++.. .+.+|+
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~-~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~---------~~~fD~ 112 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPE-LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH---------EEQFDV 112 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc---------cCCccE
Confidence 678999999999888777655422 2478999999888777766654432222345677765421 257999
Q ss_pred EEEcC
Q 006634 584 VICQN 588 (637)
Q Consensus 584 VIGGp 588 (637)
|+...
T Consensus 113 I~s~~ 117 (181)
T TIGR00138 113 ITSRA 117 (181)
T ss_pred EEehh
Confidence 98653
No 81
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.91 E-value=0.15 Score=49.88 Aligned_cols=76 Identities=17% Similarity=0.117 Sum_probs=54.3
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+.+++||-||||-++.|+...+- +.++++|||+.|..|+.++-+... -..-+.+.||.++-. ..|-||
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~--e~vlGfDIdpeALEIf~rNaeEfE-vqidlLqcdildle~--------~~g~fD 116 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKN--ESVLGFDIDPEALEIFTRNAEEFE-VQIDLLQCDILDLEL--------KGGIFD 116 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCC--ceEEeeecCHHHHHHHhhchHHhh-hhhheeeeeccchhc--------cCCeEe
Confidence 578899999999999999999886 578999999999999876543221 001123455554332 236788
Q ss_pred EEEEcCC
Q 006634 583 FVICQNS 589 (637)
Q Consensus 583 LVIGGpP 589 (637)
..+=-||
T Consensus 117 taviNpp 123 (185)
T KOG3420|consen 117 TAVINPP 123 (185)
T ss_pred eEEecCC
Confidence 8887776
No 82
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=92.87 E-value=0.19 Score=53.33 Aligned_cols=98 Identities=17% Similarity=0.122 Sum_probs=65.2
Q ss_pred Hhhhhhh--cccchhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcC-CCC
Q 006634 479 ESLRHCF--QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-QTG 555 (637)
Q Consensus 479 k~Lgnsf--qvdtv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn-~~g 555 (637)
|.||-.| +...+..++..+. ...+-+|||+-||.|.++..|...+- -++++|+|+.....++..+...+ ...
T Consensus 12 k~~GQnFL~d~~i~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~ 86 (294)
T PTZ00338 12 KKFGQHILKNPLVLDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPLASK 86 (294)
T ss_pred CCCCccccCCHHHHHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCCCCc
Confidence 4557766 2334444444332 22456899999999999999888764 37899999999998887654332 122
Q ss_pred CccccccccccChhhHHHhhhccCCccEEEEcCCCC
Q 006634 556 ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP 591 (637)
Q Consensus 556 ~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ 591 (637)
..++.+|+.++. +..+|+|++-.|=+
T Consensus 87 v~ii~~Dal~~~----------~~~~d~VvaNlPY~ 112 (294)
T PTZ00338 87 LEVIEGDALKTE----------FPYFDVCVANVPYQ 112 (294)
T ss_pred EEEEECCHhhhc----------ccccCEEEecCCcc
Confidence 235677776543 13578999877644
No 83
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=92.64 E-value=0.47 Score=46.91 Aligned_cols=43 Identities=19% Similarity=0.126 Sum_probs=36.2
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhh
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 549 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~ 549 (637)
+-+|||+=||.|..++-|.+.|++ |.++|+++.+....+..-.
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~~---V~gvD~S~~~i~~a~~~~~ 73 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGFD---VTAWDKNPMSIANLERIKA 73 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCCE---EEEEeCCHHHHHHHHHHHH
Confidence 468999999999999999999874 6899999998877766443
No 84
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=92.53 E-value=0.37 Score=47.68 Aligned_cols=80 Identities=23% Similarity=0.175 Sum_probs=54.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+.+|||+-||.|.++.-|.+++- .++++|+++......+.++...+.....+..+|..+.- ...+.||
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~fD 146 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW--------PAYAPFD 146 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC--------CcCCCcC
Confidence 468999999999999988777753 47899999998888887776543222223445543211 1125799
Q ss_pred EEEEcCCCCCc
Q 006634 583 FVICQNSVPQI 593 (637)
Q Consensus 583 LVIGGpPCQ~F 593 (637)
+|+-..+|..+
T Consensus 147 ~I~~~~~~~~~ 157 (212)
T PRK00312 147 RILVTAAAPEI 157 (212)
T ss_pred EEEEccCchhh
Confidence 99888777654
No 85
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=92.48 E-value=0.23 Score=50.91 Aligned_cols=52 Identities=23% Similarity=0.296 Sum_probs=41.4
Q ss_pred cccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhh
Q 006634 496 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 549 (637)
Q Consensus 496 vLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~ 549 (637)
.|..+...+-+|||+-||.|.+.+.+.+.|.. .++++|+|+.+.+..+.+..
T Consensus 112 ~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~ 163 (250)
T PRK00517 112 ALEKLVLPGKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAE 163 (250)
T ss_pred HHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHH
Confidence 33333446789999999999999999999864 47899999999887776654
No 86
>PRK07402 precorrin-6B methylase; Provisional
Probab=92.44 E-value=0.45 Score=46.63 Aligned_cols=47 Identities=23% Similarity=0.244 Sum_probs=36.9
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhh
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 550 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~ 550 (637)
.+-+|||++||.|.+...+.+++-. ..++++|+++...+..+.+...
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~-~~V~~vD~s~~~~~~a~~n~~~ 86 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPK-GRVIAIERDEEVVNLIRRNCDR 86 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHH
Confidence 3568999999999999888765322 3578999999999888876643
No 87
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=92.41 E-value=0.3 Score=54.65 Aligned_cols=78 Identities=12% Similarity=0.020 Sum_probs=52.4
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 583 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 583 (637)
+-++|||.||.|.+.+.+.+..-. ..++++|+++.+.+..+.+....+ ....+..+|+.+.. + ...+.||+
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~-a~VtAVDiS~~ALe~AreNa~~~g-~rV~fi~gDl~e~~---l----~~~~~FDL 322 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPD-AFVRASDISPPALETARKNAADLG-ARVEFAHGSWFDTD---M----PSEGKWDI 322 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcC-CcEEEEEcchhccc---c----ccCCCccE
Confidence 458999999999999887654211 247899999999998888765432 12224456664321 0 01246999
Q ss_pred EEEcCCC
Q 006634 584 VICQNSV 590 (637)
Q Consensus 584 VIGGpPC 590 (637)
|+.-||=
T Consensus 323 IVSNPPY 329 (423)
T PRK14966 323 IVSNPPY 329 (423)
T ss_pred EEECCCC
Confidence 9988873
No 88
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=92.37 E-value=0.21 Score=53.13 Aligned_cols=83 Identities=19% Similarity=0.256 Sum_probs=53.8
Q ss_pred CcccccCCCCChHHHHH-HHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634 505 LTMLSVFSGIGGAEVTL-HRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 583 (637)
Q Consensus 505 l~vLsLFSGiGGlslGL-~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 583 (637)
..++|++||.|.+++++ |.++ + -.+.|+|.++.|.+.-..|-....-.|.+-++.-|.+ .+.........|..|+
T Consensus 150 ~~ildlgtGSGaIslsll~~L~-~-~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me--~d~~~~~~l~~~~~dl 225 (328)
T KOG2904|consen 150 THILDLGTGSGAISLSLLHGLP-Q-CTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIME--SDASDEHPLLEGKIDL 225 (328)
T ss_pred ceEEEecCCccHHHHHHHhcCC-C-ceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccc--cccccccccccCceeE
Confidence 36999999999999996 5666 4 3678999999999887766543322233222222222 2222222234588999
Q ss_pred EEEcCCCC
Q 006634 584 VICQNSVP 591 (637)
Q Consensus 584 VIGGpPCQ 591 (637)
+++-||--
T Consensus 226 lvsNPPYI 233 (328)
T KOG2904|consen 226 LVSNPPYI 233 (328)
T ss_pred EecCCCcc
Confidence 99999853
No 89
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=92.08 E-value=0.38 Score=47.55 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=37.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhh
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 550 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~ 550 (637)
.+.+|||+-||.|.+...|.+.|.. +.++|+++......+..+..
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~~---v~~~D~s~~~i~~a~~~~~~ 107 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGAK---VVASDISPQMVEEARERAPE 107 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHh
Confidence 4678999999999999999988853 78999999988877776543
No 90
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=92.07 E-value=0.5 Score=45.89 Aligned_cols=47 Identities=17% Similarity=0.155 Sum_probs=37.4
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhh
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 550 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~ 550 (637)
.+-+|||+.||.|.+.+.+.+.+-. ..++++|+++.+....+.+...
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~n~~~ 77 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPS-LQVTAIERNPDALRLIKENRQR 77 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHH
Confidence 4678999999999999988776532 2478999999998888776543
No 91
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=91.82 E-value=0.31 Score=38.15 Aligned_cols=37 Identities=24% Similarity=0.272 Sum_probs=29.8
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHh--CCCCcHHHHHHH
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKL--GKDAPVYELVDF 113 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~--G~da~i~~Lld~ 113 (637)
.++.+..|++.||++.+|.+|+.+. +++.++++++--
T Consensus 3 ~~d~~~AL~~LGy~~~e~~~av~~~~~~~~~~~e~~ik~ 41 (47)
T PF07499_consen 3 LEDALEALISLGYSKAEAQKAVSKLLEKPGMDVEELIKQ 41 (47)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHHHHHSTTS-HHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHHHHHH
Confidence 4678899999999999999999999 788887776643
No 92
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=91.81 E-value=0.44 Score=51.32 Aligned_cols=43 Identities=23% Similarity=0.356 Sum_probs=36.7
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHh
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 548 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~ 548 (637)
.+.+|||+-||.|.+...|.+.|.. |++||+++...+..+.+.
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~---V~GID~s~~~i~~Ar~~~ 173 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGAT---VTGVDAVDKNVKIARLHA 173 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCE---EEEEeCCHHHHHHHHHHH
Confidence 4679999999999999999998863 789999999888777643
No 93
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=91.53 E-value=0.93 Score=51.64 Aligned_cols=82 Identities=16% Similarity=0.129 Sum_probs=55.8
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCccccc----c-hhh
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLY----G-TME 151 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~~~~~~~e~~d~~~d~d~~~~e~~~e~~~----~-~~~ 151 (637)
+--.+++|+.||||++...+|+=--|.-++ +.-.+.|+.+-.-.. ++ | ....++.+. + ...
T Consensus 558 Nqs~I~qL~~mGfp~~~~~rAL~~tgNqDa-EsAMNWLFqHMdDPd--------ln--d---P~~~~~~vPKkDkeVdE~ 623 (749)
T COG5207 558 NQSLIRQLVDMGFPEEDAARALGITGNQDA-ESAMNWLFQHMDDPD--------LN--D---PFVPPPNVPKKDKEVDES 623 (749)
T ss_pred hHHHHHHHHHcCCCHHHHHHHHhhccCcch-HHHHHHHHhhccCcc--------cC--C---CCCCCCCCCcccccccHH
Confidence 456789999999999999999999999886 788888887632111 11 1 000000000 1 124
Q ss_pred hHHHHHhcCCCHHHHHHHHHh
Q 006634 152 ITLQLLEMGFSENQVSLAIEK 172 (637)
Q Consensus 152 k~~~L~~MGfseeEas~Ai~r 172 (637)
+..+|+.|||....++-|+=-
T Consensus 624 ~~~Slle~Gln~n~~Rkal~~ 644 (749)
T COG5207 624 KARSLLENGLNPNLCRKALMD 644 (749)
T ss_pred HHHHHHHcCCCHHHHHHHHHH
Confidence 667999999999999987643
No 94
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=91.37 E-value=0.34 Score=51.95 Aligned_cols=55 Identities=22% Similarity=0.300 Sum_probs=46.6
Q ss_pred hhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhh
Q 006634 493 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 549 (637)
Q Consensus 493 ~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~ 549 (637)
=|.-|..+-..+.+|||+=||.|=+++|..++|. +-++++|||+.|.++-+.+-.
T Consensus 152 cL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~ 206 (300)
T COG2264 152 CLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENAR 206 (300)
T ss_pred HHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHH
Confidence 3555666666889999999999999999999997 468999999999998887654
No 95
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=91.34 E-value=0.27 Score=40.41 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=22.0
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCCCC
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKLGKDA 105 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da 105 (637)
+.+.+..|+.|||+.+-|..|+++.|-+.
T Consensus 9 ~~~lVd~F~~mGF~~dkVvevlrrlgik~ 37 (55)
T PF09288_consen 9 DKDLVDQFENMGFERDKVVEVLRRLGIKS 37 (55)
T ss_dssp SHHHHHHHHHHT--HHHHHHHHHHS--SS
T ss_pred CHHHHHHHHHcCCcHHHHHHHHHHhCCCC
Confidence 45678999999999999999999998754
No 96
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=90.99 E-value=0.65 Score=45.75 Aligned_cols=78 Identities=15% Similarity=0.179 Sum_probs=47.8
Q ss_pred CCCcccccCCCCChHHHHHHH-cCCceeeEEEeecCHHHHHHHHHHhhhcC-CCCCccccccccccChhhHHHhhhccCC
Q 006634 503 GGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSG-QTGELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~-aGi~~k~vvaVEid~~a~~t~r~~~~~tn-~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
.+-+|||+.||.|.+++.+.+ +|-. ..++++|+++...+..+.+....+ .....+..+|..++ +.. ..+.
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~-~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~----l~~---~~~~ 111 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGET-GKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI----LFT---INEK 111 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh----Hhh---cCCC
Confidence 457899999999999988754 3422 247899999998887766543322 01111233444321 111 1257
Q ss_pred ccEEEEcC
Q 006634 581 IDFVICQN 588 (637)
Q Consensus 581 ~DLVIGGp 588 (637)
+|+|+-|.
T Consensus 112 ~D~V~~~~ 119 (198)
T PRK00377 112 FDRIFIGG 119 (198)
T ss_pred CCEEEECC
Confidence 99988754
No 97
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=90.95 E-value=0.41 Score=52.79 Aligned_cols=75 Identities=13% Similarity=0.106 Sum_probs=50.8
Q ss_pred CcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCC----ccccccccccChhhHHHhhhccCC
Q 006634 505 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE----LVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 505 l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~----l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
-+||||.||.|-+.+.+.+.+=. --|++||+++.+...-+.++... .... .+...|+.+ .+ ..+.
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~-~~V~~vD~S~~Av~~A~~N~~~n-~~~~~~~v~~~~~D~l~-------~~--~~~~ 298 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETN-MPEALDRCEFMINNALS-------GV--EPFR 298 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHc-CcccCceEEEEEccccc-------cC--CCCC
Confidence 38999999999999988877522 24789999999999888877533 2211 122333321 00 1246
Q ss_pred ccEEEEcCCC
Q 006634 581 IDFVICQNSV 590 (637)
Q Consensus 581 ~DLVIGGpPC 590 (637)
||+|+.-||.
T Consensus 299 fDlIlsNPPf 308 (378)
T PRK15001 299 FNAVLCNPPF 308 (378)
T ss_pred EEEEEECcCc
Confidence 9999998885
No 98
>KOG2730 consensus Methylase [General function prediction only]
Probab=90.86 E-value=0.33 Score=50.31 Aligned_cols=103 Identities=16% Similarity=0.143 Sum_probs=63.3
Q ss_pred cccchhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-Ccccccccc
Q 006634 486 QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQ 564 (637)
Q Consensus 486 qvdtv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~ 564 (637)
++.-++-|+.--+.-+.+.-.+||-|||+||-..=|-.-|- .|.++|||+.....-+++-+-.+-+. ..++++|+-
T Consensus 77 Tpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~---~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~l 153 (263)
T KOG2730|consen 77 TPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP---YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFL 153 (263)
T ss_pred ccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC---eEEEEeccHHHHHHHhccceeecCCceeEEEechHH
Confidence 44455666554444444667899999999999999988885 36799999997665554322111111 114566665
Q ss_pred ccChhhHHHhhhccCCccEEEEcCCCCCcCc
Q 006634 565 ALTTKKFESLIHKLGSIDFVICQNSVPQIPN 595 (637)
Q Consensus 565 ~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~ 595 (637)
++-. .+ ++.+ .-+|+|.+.||=-+-|.
T Consensus 154 d~~~-~l-q~~K--~~~~~vf~sppwggp~y 180 (263)
T KOG2730|consen 154 DLAS-KL-KADK--IKYDCVFLSPPWGGPSY 180 (263)
T ss_pred HHHH-HH-hhhh--heeeeeecCCCCCCcch
Confidence 4321 11 1111 23789998888766664
No 99
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=90.81 E-value=0.51 Score=50.69 Aligned_cols=43 Identities=21% Similarity=0.170 Sum_probs=36.2
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHh
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 548 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~ 548 (637)
.+.+|||+-||.|.+...|.+.|.+ |+++|+++...+..+...
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~---V~gvD~S~~ml~~A~~~~ 186 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAI---VSASDISAAMVAEAERRA 186 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCE---EEEEECCHHHHHHHHHHH
Confidence 4679999999999999999999863 789999999877666543
No 100
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=90.75 E-value=0.52 Score=53.66 Aligned_cols=81 Identities=15% Similarity=0.066 Sum_probs=52.1
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCcc
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
+.+|||+.||.|.+.+++...- +-..++++|+++.+.+..+.+....+... ..+..+|+.+ .+ ..+.||
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-------~~--~~~~fD 208 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-------NI--EKQKFD 208 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-------hC--cCCCcc
Confidence 4689999999999998876431 11247899999999998887754332111 1123444321 11 124699
Q ss_pred EEEEcCCCCCcC
Q 006634 583 FVICQNSVPQIP 594 (637)
Q Consensus 583 LVIGGpPCQ~FS 594 (637)
+|+..||=-+.+
T Consensus 209 lIvsNPPYi~~~ 220 (506)
T PRK01544 209 FIVSNPPYISHS 220 (506)
T ss_pred EEEECCCCCCch
Confidence 999999855443
No 101
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=90.49 E-value=0.56 Score=47.93 Aligned_cols=78 Identities=21% Similarity=0.209 Sum_probs=53.2
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
+.+.+|||+=||.|.++..|.+.|.+ |+++|+++...+..+......+... ..++.+|+.++.. . ..+.
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~~---v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~-----~--~~~~ 112 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGHQ---VILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ-----H--LETP 112 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh-----h--cCCC
Confidence 35679999999999999999999863 6899999998887776543322111 1234566665432 0 1246
Q ss_pred ccEEEEcCC
Q 006634 581 IDFVICQNS 589 (637)
Q Consensus 581 ~DLVIGGpP 589 (637)
||+|+....
T Consensus 113 fD~V~~~~v 121 (255)
T PRK11036 113 VDLILFHAV 121 (255)
T ss_pred CCEEEehhH
Confidence 888886544
No 102
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=90.45 E-value=0.58 Score=48.83 Aligned_cols=72 Identities=33% Similarity=0.356 Sum_probs=52.1
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+++|||.=||.|=++.-+.++|. .|.++|+++.+..+-+.++..+. .. -|=...+.+ ++...-+.||
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga---~VtgiD~se~~I~~Ak~ha~e~g---v~---i~y~~~~~e---dl~~~~~~FD 126 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGA---SVTGIDASEKPIEVAKLHALESG---VN---IDYRQATVE---DLASAGGQFD 126 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCC---eeEEecCChHHHHHHHHhhhhcc---cc---ccchhhhHH---HHHhcCCCcc
Confidence 479999999999999999999996 47899999999999887775442 21 122223333 3332237899
Q ss_pred EEEE
Q 006634 583 FVIC 586 (637)
Q Consensus 583 LVIG 586 (637)
+|+.
T Consensus 127 vV~c 130 (243)
T COG2227 127 VVTC 130 (243)
T ss_pred EEEE
Confidence 9983
No 103
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=90.39 E-value=0.34 Score=50.09 Aligned_cols=98 Identities=20% Similarity=0.177 Sum_probs=65.6
Q ss_pred hhhhhh--cccchhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCc
Q 006634 480 SLRHCF--QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL 557 (637)
Q Consensus 480 ~Lgnsf--qvdtv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l 557 (637)
.+|-.| +..++..+.+.+... .+.+||++-+|.|-++..|...| +-++++|+|+.....++..+. ......
T Consensus 7 ~~gQnFL~~~~~~~~Iv~~~~~~--~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--~~~~~~ 79 (262)
T PF00398_consen 7 SLGQNFLVDPNIADKIVDALDLS--EGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--SNPNVE 79 (262)
T ss_dssp GCTSSEEEHHHHHHHHHHHHTCG--TTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--TCSSEE
T ss_pred CCCcCeeCCHHHHHHHHHhcCCC--CCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--hcccce
Confidence 344444 222344444444322 57889999999999999999998 458899999999999987543 122233
Q ss_pred cccccccccChhhHHHhhhccCCccEEEEcCC
Q 006634 558 VQIEDIQALTTKKFESLIHKLGSIDFVICQNS 589 (637)
Q Consensus 558 ~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpP 589 (637)
++.+|+.+++..... .....+|+|--|
T Consensus 80 vi~~D~l~~~~~~~~-----~~~~~~vv~NlP 106 (262)
T PF00398_consen 80 VINGDFLKWDLYDLL-----KNQPLLVVGNLP 106 (262)
T ss_dssp EEES-TTTSCGGGHC-----SSSEEEEEEEET
T ss_pred eeecchhccccHHhh-----cCCceEEEEEec
Confidence 567999888764321 235667888777
No 104
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=90.34 E-value=0.51 Score=48.55 Aligned_cols=75 Identities=16% Similarity=0.196 Sum_probs=48.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHH-HHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRR-ILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~-t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+-++||+-||.||++..+.+.|. +.|++||+++.-.. .++. +.........+|+.++.+++. ..+..+
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~-----~~~v~~~~~~ni~~~~~~~~~---~d~~~~ 144 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQ-----DERVKVLERTNIRYVTPADIF---PDFATF 144 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhc-----CCCeeEeecCCcccCCHhHcC---CCceee
Confidence 567899999999999999999985 56899999995322 2321 111112345677766655542 123456
Q ss_pred cEEEEc
Q 006634 582 DFVICQ 587 (637)
Q Consensus 582 DLVIGG 587 (637)
|+++-+
T Consensus 145 DvsfiS 150 (228)
T TIGR00478 145 DVSFIS 150 (228)
T ss_pred eEEEee
Confidence 666543
No 105
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=90.10 E-value=0.68 Score=46.03 Aligned_cols=79 Identities=19% Similarity=0.183 Sum_probs=52.9
Q ss_pred ccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 006634 499 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL 578 (637)
Q Consensus 499 ~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~ 578 (637)
++++.+.+|||+=||.|.+++.+.++.-. ..|+++|+++......+.+....+.....++.+|+.++.. .
T Consensus 41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~-~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~---------~ 110 (187)
T PRK00107 41 PYLPGGERVLDVGSGAGFPGIPLAIARPE-LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ---------E 110 (187)
T ss_pred hhcCCCCeEEEEcCCCCHHHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC---------C
Confidence 33444789999999999988877653322 2578999999988777766554432222345566655432 2
Q ss_pred CCccEEEEc
Q 006634 579 GSIDFVICQ 587 (637)
Q Consensus 579 g~~DLVIGG 587 (637)
+.||+|+..
T Consensus 111 ~~fDlV~~~ 119 (187)
T PRK00107 111 EKFDVVTSR 119 (187)
T ss_pred CCccEEEEc
Confidence 479999963
No 106
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=89.77 E-value=1.5 Score=51.45 Aligned_cols=101 Identities=21% Similarity=0.260 Sum_probs=63.6
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccC--CCCCCCCCCCCCCCCcccccchhhhHH
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKET--DDAPHDNDGTNEDKSDETLYGTMEITL 154 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~~~~~~~e~--~d~~~d~d~~~~e~~~e~~~~~~~k~~ 154 (637)
.--.+..|+.||||++-..+|+==-|...+ +.-...|+.+=.-...++-- .....-.++. +. +| +-..
T Consensus 571 d~s~i~qL~~MGFp~eac~rAly~tgN~~a-EaA~NWl~~HMdDpd~~~p~vvp~~~~~a~~~--~~-~e------~~v~ 640 (763)
T KOG0944|consen 571 DRSVISQLVEMGFPEEACRRALYYTGNSGA-EAASNWLMEHMDDPDIDDPFVVPGNSPKADAR--EV-DE------ESVA 640 (763)
T ss_pred hHHHHHHHHHcCCCHHHHHHHHhhhcCccH-HHHHHHHHHhccCcccCCceecCCCCCccccC--CC-Ch------hHhe
Confidence 344678999999999999999988888775 55566666553211110000 0000000110 01 11 2233
Q ss_pred HHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhhc
Q 006634 155 QLLEMGFSENQVSLAIEKFGSKTPISELADKIFSG 189 (637)
Q Consensus 155 ~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~Aa 189 (637)
+++.|||+..+|..|+.-. +..|+.+||-|++-
T Consensus 641 si~smGf~~~qa~~aL~~~--n~nveravDWif~h 673 (763)
T KOG0944|consen 641 SIVSMGFSRNQAIKALKAT--NNNVERAVDWIFSH 673 (763)
T ss_pred eeeeecCcHHHHHHHHHhc--CccHHHHHHHHHhc
Confidence 8899999999999888654 55799999999874
No 107
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=89.73 E-value=0.31 Score=52.38 Aligned_cols=54 Identities=26% Similarity=0.270 Sum_probs=43.3
Q ss_pred hhccccccCCCCCcccccCCCCChHHH-HHHHcCCceeeEEEeecCHHHHHHHHHHhh
Q 006634 493 HLSVLKSMFPGGLTMLSVFSGIGGAEV-TLHRLGIKLKGVISIETSETNRRILKRWWE 549 (637)
Q Consensus 493 ~lsvLK~~f~~~l~vLsLFSGiGGlsl-GL~~aGi~~k~vvaVEid~~a~~t~r~~~~ 549 (637)
-++|+ +++..+-.++|||||||=|++ -+-.+|. +.|+|+|+++-+...|++.-.
T Consensus 185 K~Rv~-~~sc~~eviVDLYAGIGYFTlpflV~agA--k~V~A~EwNp~svEaLrR~~~ 239 (351)
T KOG1227|consen 185 KKRVL-NTSCDGEVIVDLYAGIGYFTLPFLVTAGA--KTVFACEWNPWSVEALRRNAE 239 (351)
T ss_pred HHHhh-hcccccchhhhhhcccceEEeehhhccCc--cEEEEEecCHHHHHHHHHHHH
Confidence 34444 334556779999999999999 7789997 579999999999999998654
No 108
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=89.59 E-value=0.74 Score=45.77 Aligned_cols=81 Identities=20% Similarity=0.118 Sum_probs=53.3
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccc-cccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDI-QALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI-~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+.+|||+-||.|.+...+.+.. +-..+++||+++......+++..........++.+|+ ..+. .. ...+.|
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~-----~~-~~~~~~ 112 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLL-----DM-FPDGSL 112 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHH-----HH-cCcccc
Confidence 45789999999999999886653 2235899999999988887765433222222455666 3221 11 113569
Q ss_pred cEEEEcCCC
Q 006634 582 DFVICQNSV 590 (637)
Q Consensus 582 DLVIGGpPC 590 (637)
|+|+--+|.
T Consensus 113 D~V~~~~~~ 121 (202)
T PRK00121 113 DRIYLNFPD 121 (202)
T ss_pred ceEEEECCC
Confidence 999876554
No 109
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=89.01 E-value=1.1 Score=45.16 Aligned_cols=73 Identities=14% Similarity=0.059 Sum_probs=46.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccCh-hhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT-KKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~-~~Ie~l~~~~g~~ 581 (637)
.+-+||||=||.|+++..+.+..-.-..|++||+++.. +.++..++.+||.+... ..|.... ..+.+
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~-----------~~~~v~~i~~D~~~~~~~~~i~~~~-~~~~~ 118 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD-----------PIVGVDFLQGDFRDELVLKALLERV-GDSKV 118 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc-----------CCCCcEEEecCCCChHHHHHHHHHh-CCCCC
Confidence 45689999999999987665542122358999999831 12344467889887542 2222111 23679
Q ss_pred cEEEEc
Q 006634 582 DFVICQ 587 (637)
Q Consensus 582 DLVIGG 587 (637)
|+|+..
T Consensus 119 D~V~S~ 124 (209)
T PRK11188 119 QVVMSD 124 (209)
T ss_pred CEEecC
Confidence 999974
No 110
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=88.73 E-value=11 Score=35.95 Aligned_cols=77 Identities=14% Similarity=0.087 Sum_probs=50.5
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCcccccchhhhHH-HH
Q 006634 78 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITL-QL 156 (637)
Q Consensus 78 ~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~~~~~~~e~~d~~~d~d~~~~e~~~e~~~~~~~k~~-~L 156 (637)
-.....|..-||+.+.|..|++++.+ +. .+++..++.-...... ..+. ....|+. +|
T Consensus 79 ~~I~~~L~~kGi~~~~I~~~l~~~~~-d~-~e~a~~~~~k~~~~~~-------------------~~~~-~~k~Ki~~~L 136 (157)
T PRK00117 79 RRIRQELRQKGVDREIIEEALAELDI-DW-EELARELARKKFRRPL-------------------PDDA-KEKAKLVRFL 136 (157)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCc-cH-HHHHHHHHHHHcCCCC-------------------CCCH-HHHHHHHHHH
Confidence 34557899999999999999999973 32 2333333332221110 0001 1234665 99
Q ss_pred HhcCCCHHHHHHHHHhhCCC
Q 006634 157 LEMGFSENQVSLAIEKFGSK 176 (637)
Q Consensus 157 ~~MGfseeEas~Ai~r~G~d 176 (637)
..=||+-+.+..||+....+
T Consensus 137 ~rkGF~~~~I~~~l~~~~~~ 156 (157)
T PRK00117 137 ARRGFSMDVIQRVLRNALDD 156 (157)
T ss_pred HHCCCCHHHHHHHHHhhhcc
Confidence 99999999999999876654
No 111
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=88.68 E-value=0.71 Score=49.34 Aligned_cols=54 Identities=22% Similarity=0.258 Sum_probs=42.9
Q ss_pred ccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhh
Q 006634 495 SVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 550 (637)
Q Consensus 495 svLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~ 550 (637)
..|..+...+-+|||+=||.|=++++..++|.. -|+++|||+.|.++-+.|-..
T Consensus 153 ~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~--~v~a~DiDp~Av~~a~~N~~~ 206 (295)
T PF06325_consen 153 ELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAK--KVVAIDIDPLAVEAARENAEL 206 (295)
T ss_dssp HHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBS--EEEEEESSCHHHHHHHHHHHH
T ss_pred HHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHH
Confidence 334444445679999999999999999999984 589999999999988877543
No 112
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=88.57 E-value=1.6 Score=43.49 Aligned_cols=82 Identities=20% Similarity=0.107 Sum_probs=51.4
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
.+-+|||+.||.|..+.-+.++ +- -..|+++|+++......+.+....+... ..+..+|..+.-. ..+.
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~-~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~--------~~~~ 142 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIER-RGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE--------KHAP 142 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc--------cCCC
Confidence 3578999999999998777653 21 1247899999998776665554322111 1234566654221 1257
Q ss_pred ccEEEEcCCCCCc
Q 006634 581 IDFVICQNSVPQI 593 (637)
Q Consensus 581 ~DLVIGGpPCQ~F 593 (637)
||+|+-+..+..+
T Consensus 143 fD~Ii~~~~~~~~ 155 (205)
T PRK13944 143 FDAIIVTAAASTI 155 (205)
T ss_pred ccEEEEccCcchh
Confidence 8998877665444
No 113
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=88.42 E-value=1.6 Score=45.28 Aligned_cols=72 Identities=24% Similarity=0.316 Sum_probs=47.7
Q ss_pred hhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhhccccccCCCCCcccccCCCCChHHHHHHH-cCCceeeEE
Q 006634 454 EHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVI 532 (637)
Q Consensus 454 ~E~E~i~GfP~~~T~~~~~~~teR~k~Lgnsfqvdtv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~-aGi~~k~vv 532 (637)
.-.|+|||.-.-|+. ++..+... ++.|. .+.+.+|||+=||.|+....+.+ .|. .|+
T Consensus 22 ~~~e~~~g~~~~~~g--g~~~~~~~---------------l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~~~---~v~ 79 (263)
T PTZ00098 22 KAYEFIFGEDYISSG--GIEATTKI---------------LSDIE--LNENSKVLDIGSGLGGGCKYINEKYGA---HVH 79 (263)
T ss_pred hhHHHHhCCCCCCCC--chHHHHHH---------------HHhCC--CCCCCEEEEEcCCCChhhHHHHhhcCC---EEE
Confidence 345888887666665 45444333 22221 23467899999999998877754 344 378
Q ss_pred EeecCHHHHHHHHHH
Q 006634 533 SIETSETNRRILKRW 547 (637)
Q Consensus 533 aVEid~~a~~t~r~~ 547 (637)
++|+++......+..
T Consensus 80 giD~s~~~~~~a~~~ 94 (263)
T PTZ00098 80 GVDICEKMVNIAKLR 94 (263)
T ss_pred EEECCHHHHHHHHHH
Confidence 999999887766654
No 114
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=88.41 E-value=2 Score=47.60 Aligned_cols=109 Identities=19% Similarity=0.190 Sum_probs=69.8
Q ss_pred ccccCCCCCcccccCCCCChHHH--HHHHcC------------------------------------CceeeEEEeecCH
Q 006634 497 LKSMFPGGLTMLSVFSGIGGAEV--TLHRLG------------------------------------IKLKGVISIETSE 538 (637)
Q Consensus 497 LK~~f~~~l~vLsLFSGiGGlsl--GL~~aG------------------------------------i~~k~vvaVEid~ 538 (637)
|-.+.+. -.++|-|||.|.+-+ |+-.+. -++..++++|||+
T Consensus 186 lagw~~~-~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~ 264 (381)
T COG0116 186 LAGWKPD-EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDP 264 (381)
T ss_pred HcCCCCC-CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCH
Confidence 3344443 579999999998743 332221 1222467999999
Q ss_pred HHHHHHHHHhhhcCCCCCc-cccccccccChhhHHHhhhccCCccEEEEcCCCCCcCccCccCCCCCccccccCCCCCCC
Q 006634 539 TNRRILKRWWESSGQTGEL-VQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDF 617 (637)
Q Consensus 539 ~a~~t~r~~~~~tn~~g~l-~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~ 617 (637)
...+.-+.|.......+.+ +...|++.+... ++.+|+||+-||= |.|-|-+..
T Consensus 265 r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~--------~~~~gvvI~NPPY------------------GeRlg~~~~ 318 (381)
T COG0116 265 RHIEGAKANARAAGVGDLIEFKQADATDLKEP--------LEEYGVVISNPPY------------------GERLGSEAL 318 (381)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEcchhhCCCC--------CCcCCEEEeCCCc------------------chhcCChhh
Confidence 9999998888766433222 356777777653 2478999988882 224332222
Q ss_pred CcchHHHHHHHHHHh
Q 006634 618 DFSLYYEFVRVVQRV 632 (637)
Q Consensus 618 Rs~LF~Ey~RIV~~v 632 (637)
-..||-+|.+.++..
T Consensus 319 v~~LY~~fg~~lk~~ 333 (381)
T COG0116 319 VAKLYREFGRTLKRL 333 (381)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345899999888543
No 115
>PLN02244 tocopherol O-methyltransferase
Probab=88.36 E-value=1.3 Score=47.64 Aligned_cols=73 Identities=23% Similarity=0.228 Sum_probs=47.1
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
.+-+|||+-||.|++...|.+. |. .|++||+++...+..+......+.. ...++.+|+.++.- ..+.
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~---~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~--------~~~~ 186 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGA---NVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF--------EDGQ 186 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC--------CCCC
Confidence 4578999999999999888775 54 3689999999877665543322111 12244566655431 1245
Q ss_pred ccEEEE
Q 006634 581 IDFVIC 586 (637)
Q Consensus 581 ~DLVIG 586 (637)
||+|+.
T Consensus 187 FD~V~s 192 (340)
T PLN02244 187 FDLVWS 192 (340)
T ss_pred ccEEEE
Confidence 777765
No 116
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=88.26 E-value=1.5 Score=44.05 Aligned_cols=88 Identities=16% Similarity=0.113 Sum_probs=53.3
Q ss_pred hhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChh
Q 006634 490 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTK 569 (637)
Q Consensus 490 v~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~ 569 (637)
++..+..|. ...+-+|||+-||.|.++.-+.++.-.-..|+++|+++...+..+.++...+.....+..+|..+...
T Consensus 65 ~~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~- 141 (212)
T PRK13942 65 VAIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE- 141 (212)
T ss_pred HHHHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC-
Confidence 344444443 23468999999999999977765421112478999999998888776654322112234555543211
Q ss_pred hHHHhhhccCCccEEEEc
Q 006634 570 KFESLIHKLGSIDFVICQ 587 (637)
Q Consensus 570 ~Ie~l~~~~g~~DLVIGG 587 (637)
..+.||+|+-+
T Consensus 142 -------~~~~fD~I~~~ 152 (212)
T PRK13942 142 -------ENAPYDRIYVT 152 (212)
T ss_pred -------cCCCcCEEEEC
Confidence 12467887643
No 117
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=88.16 E-value=1.1 Score=38.93 Aligned_cols=70 Identities=24% Similarity=0.369 Sum_probs=47.8
Q ss_pred ccccCCCCChHHHHHHHc---CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634 507 MLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 583 (637)
Q Consensus 507 vLsLFSGiGGlslGL~~a---Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 583 (637)
||||=||.|-....|.+. |.. ..+.++|+++.+....+++....+. ...+++.|++++.. ..+.+|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~-~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~--------~~~~~D~ 70 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPS-SRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPF--------SDGKFDL 70 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHH--------HSSSEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhccc-ceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcc--------cCCCeeE
Confidence 689999999999998876 432 3578999999998888776643322 33457889877532 2358999
Q ss_pred EEE
Q 006634 584 VIC 586 (637)
Q Consensus 584 VIG 586 (637)
|+.
T Consensus 71 v~~ 73 (101)
T PF13649_consen 71 VVC 73 (101)
T ss_dssp EEE
T ss_pred EEE
Confidence 997
No 118
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=87.95 E-value=2.1 Score=42.65 Aligned_cols=44 Identities=30% Similarity=0.278 Sum_probs=35.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhh
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 549 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~ 549 (637)
.+.+||++.||.|.+...+.+.|.. ++++|+++......+....
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~~---v~~iD~s~~~~~~a~~~~~ 91 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGAD---VTGIDASEENIEVARLHAL 91 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCe---EEEEcCCHHHHHHHHHHHH
Confidence 4678999999999999999888853 6889999998776665443
No 119
>PRK10742 putative methyltransferase; Provisional
Probab=87.71 E-value=2 Score=45.17 Aligned_cols=84 Identities=15% Similarity=0.192 Sum_probs=55.9
Q ss_pred CcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCcc--ccccccccChhhHHHhhhccCCcc
Q 006634 505 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELV--QIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 505 l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~--~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+|||+|+|-|...+=+-.+|.. |+.||-++.....++.......+...+- +...|+-+..+.+.-+-.....||
T Consensus 90 p~VLD~TAGlG~Da~~las~G~~---V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fD 166 (250)
T PRK10742 90 PDVVDATAGLGRDAFVLASVGCR---VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ 166 (250)
T ss_pred CEEEECCCCccHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCc
Confidence 48999999999998888888974 7899999999999987665422211111 112344444444432222224699
Q ss_pred EEEEcCCCC
Q 006634 583 FVICQNSVP 591 (637)
Q Consensus 583 LVIGGpPCQ 591 (637)
+|.-=||=.
T Consensus 167 VVYlDPMfp 175 (250)
T PRK10742 167 VVYLDPMFP 175 (250)
T ss_pred EEEECCCCC
Confidence 999998744
No 120
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=87.44 E-value=0.92 Score=46.41 Aligned_cols=93 Identities=14% Similarity=0.133 Sum_probs=57.4
Q ss_pred hhhhhccccccCCCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccC
Q 006634 490 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALT 567 (637)
Q Consensus 490 v~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt 567 (637)
.+.+|..|-...+ .-+||++.+|+|.-.+.+.++ +-. -.++++|+++.+.+..+.+|...+... ..++.+|..++
T Consensus 56 ~g~~L~~l~~~~~-~~~vLEiGt~~G~s~l~la~~~~~~-g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~- 132 (234)
T PLN02781 56 EGLFLSMLVKIMN-AKNTLEIGVFTGYSLLTTALALPED-GRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA- 132 (234)
T ss_pred HHHHHHHHHHHhC-CCEEEEecCcccHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH-
Confidence 3445555555443 568999999999866655543 211 147899999999999999997664321 12345665432
Q ss_pred hhhHHHhhhc--cCCccEEEEcC
Q 006634 568 TKKFESLIHK--LGSIDFVICQN 588 (637)
Q Consensus 568 ~~~Ie~l~~~--~g~~DLVIGGp 588 (637)
+..+... .+.||+|.-..
T Consensus 133 ---L~~l~~~~~~~~fD~VfiDa 152 (234)
T PLN02781 133 ---LDQLLNNDPKPEFDFAFVDA 152 (234)
T ss_pred ---HHHHHhCCCCCCCCEEEECC
Confidence 2222222 25789887553
No 121
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=87.29 E-value=1.3 Score=50.18 Aligned_cols=85 Identities=11% Similarity=0.108 Sum_probs=58.6
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+.+|||+.||.||=+..+..+ +-. -.++|+|+++.-.++++.+....+.....+...|.+.+.. . ..+.|
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~-g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~-----~--~~~~f 184 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQ-GAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGA-----A--LPETF 184 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhh-----h--chhhc
Confidence 4678999999999999887653 111 1488999999998899887665432222233445444321 1 12469
Q ss_pred cEEEEcCCCCCcCc
Q 006634 582 DFVICQNSVPQIPN 595 (637)
Q Consensus 582 DLVIGGpPCQ~FS~ 595 (637)
|.|+==+||.+...
T Consensus 185 D~ILvDaPCSG~G~ 198 (470)
T PRK11933 185 DAILLDAPCSGEGT 198 (470)
T ss_pred CeEEEcCCCCCCcc
Confidence 99999999998875
No 122
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=87.09 E-value=1 Score=44.15 Aligned_cols=77 Identities=14% Similarity=0.074 Sum_probs=52.9
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 583 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 583 (637)
+.+||||-||.|.+...+.+.+... .++++|+++...+..+.... ....++..|+.++.. ..+.+|+
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~-~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~--------~~~~fD~ 101 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQA-EFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPL--------EDSSFDL 101 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCC-cEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCC--------CCCceeE
Confidence 4789999999999999999988543 47899999998776654332 111234566655431 1246899
Q ss_pred EEEcCCCCCc
Q 006634 584 VICQNSVPQI 593 (637)
Q Consensus 584 VIGGpPCQ~F 593 (637)
|+....++.+
T Consensus 102 vi~~~~l~~~ 111 (240)
T TIGR02072 102 IVSNLALQWC 111 (240)
T ss_pred EEEhhhhhhc
Confidence 9977665543
No 123
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=87.00 E-value=1.5 Score=44.40 Aligned_cols=86 Identities=15% Similarity=0.083 Sum_probs=55.1
Q ss_pred cccchhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccc
Q 006634 486 QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA 565 (637)
Q Consensus 486 qvdtv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~ 565 (637)
|......+++.|+. ...-+|||+=||.|.++..|...|. .++++|+++...+..+... ....++.+|+..
T Consensus 27 q~~~a~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~-----~~~~~~~~d~~~ 96 (251)
T PRK10258 27 QRQSADALLAMLPQ--RKFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKD-----AADHYLAGDIES 96 (251)
T ss_pred HHHHHHHHHHhcCc--cCCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhC-----CCCCEEEcCccc
Confidence 33333344455543 2346799999999999988888774 4789999999877665421 112245677765
Q ss_pred cChhhHHHhhhccCCccEEEEcCC
Q 006634 566 LTTKKFESLIHKLGSIDFVICQNS 589 (637)
Q Consensus 566 Lt~~~Ie~l~~~~g~~DLVIGGpP 589 (637)
+.- ..+.||+|+...+
T Consensus 97 ~~~--------~~~~fD~V~s~~~ 112 (251)
T PRK10258 97 LPL--------ATATFDLAWSNLA 112 (251)
T ss_pred CcC--------CCCcEEEEEECch
Confidence 431 1236898886543
No 124
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=86.95 E-value=1.4 Score=46.00 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=36.1
Q ss_pred cccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhh
Q 006634 506 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 550 (637)
Q Consensus 506 ~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~ 550 (637)
+|||+=||.|...+-|.+.|++ |+++|+++.+....+.....
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~~---V~avD~s~~ai~~~~~~~~~ 164 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGFD---VTAVDINQQSLENLQEIAEK 164 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHH
Confidence 8999999999999999888974 68999999998877765543
No 125
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=86.77 E-value=1.3 Score=44.85 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=35.3
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHH
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL 544 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~ 544 (637)
+.+-+||++.||.|--.+-|.+.|+. |++||+++.++..+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~~---V~gvD~S~~Ai~~~ 72 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGHR---VLGVELSEIAVEQF 72 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCCe---EEEEeCCHHHHHHH
Confidence 45679999999999999999999985 78999999998854
No 126
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=85.69 E-value=2 Score=50.91 Aligned_cols=54 Identities=11% Similarity=0.143 Sum_probs=37.0
Q ss_pred eEEEeecCHHHHHHHHHHhhhcCCCCC-ccccccccccChhhHHHhhhccCCccEEEEcCC
Q 006634 530 GVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFESLIHKLGSIDFVICQNS 589 (637)
Q Consensus 530 ~vvaVEid~~a~~t~r~~~~~tn~~g~-l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpP 589 (637)
.++++|+|+.+...-+.+....+.... .+..+|+.++.... ..+.+|+|+.=||
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~------~~~~~d~IvtNPP 312 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL------PKGPTGLVISNPP 312 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc------ccCCCCEEEECCC
Confidence 378999999999999988876543221 24567777654311 1245899998887
No 127
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=85.65 E-value=0.96 Score=49.87 Aligned_cols=62 Identities=23% Similarity=0.306 Sum_probs=43.1
Q ss_pred hcccchhhhhccccccCCCCCcccccCCCCC--hHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhh
Q 006634 485 FQTDTLGYHLSVLKSMFPGGLTMLSVFSGIG--GAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 549 (637)
Q Consensus 485 fqvdtv~~~lsvLK~~f~~~l~vLsLFSGiG--GlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~ 549 (637)
.++-.+. .+++++.-+..++++||-+||+| |+.++.+-.|. ..|+++|+|+.+.+.++.+-+
T Consensus 32 lsvl~~~-~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~--~~v~~NDi~~~a~~~i~~N~~ 95 (377)
T PF02005_consen 32 LSVLAIR-YLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGV--DKVTANDISPEAVELIKRNLE 95 (377)
T ss_dssp HHHHH----HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSE--CEEEEEES-HHHHHHHHHHHH
T ss_pred eeehhHH-HHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCC--CEEEEecCCHHHHHHHHHhHh
Confidence 4444444 45666655556799999999999 99999997776 468999999999999998754
No 128
>PRK05785 hypothetical protein; Provisional
Probab=85.64 E-value=1.8 Score=43.94 Aligned_cols=73 Identities=16% Similarity=0.183 Sum_probs=49.4
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+-+||||-||.|-+...|.+.+ . ..++++|+++...+.-+. . .. .+.+|..++.- ..+.||
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~-~~v~gvD~S~~Ml~~a~~----~---~~-~~~~d~~~lp~--------~d~sfD 112 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-K-YYVVALDYAENMLKMNLV----A---DD-KVVGSFEALPF--------RDKSFD 112 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-C-CEEEEECCCHHHHHHHHh----c---cc-eEEechhhCCC--------CCCCEE
Confidence 35789999999999988888873 1 247899999998776542 1 11 23566655431 125799
Q ss_pred EEEEcCCCCCc
Q 006634 583 FVICQNSVPQI 593 (637)
Q Consensus 583 LVIGGpPCQ~F 593 (637)
+|+.+.-.+.+
T Consensus 113 ~v~~~~~l~~~ 123 (226)
T PRK05785 113 VVMSSFALHAS 123 (226)
T ss_pred EEEecChhhcc
Confidence 99987654433
No 129
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=85.61 E-value=2.4 Score=41.27 Aligned_cols=74 Identities=22% Similarity=0.163 Sum_probs=49.0
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+.+|||+-||.|.+...+.+.+-....++++|+++......+..+. . .....+..+|+.++.. ..+.+|
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~-~~~i~~~~~d~~~~~~--------~~~~~D 108 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L-PLNIEFIQADAEALPF--------EDNSFD 108 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c-CCCceEEecchhcCCC--------CCCcEE
Confidence 46799999999999999888877431257899999988777766442 1 1112244566665431 123577
Q ss_pred EEEE
Q 006634 583 FVIC 586 (637)
Q Consensus 583 LVIG 586 (637)
+|+.
T Consensus 109 ~i~~ 112 (223)
T TIGR01934 109 AVTI 112 (223)
T ss_pred EEEE
Confidence 7764
No 130
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=85.21 E-value=1.8 Score=45.74 Aligned_cols=86 Identities=20% Similarity=0.197 Sum_probs=59.0
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 583 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 583 (637)
+-+|||+.||.||=+..+..+-..--.++|+|+++.-...++.+..+.+.....+...|-+++..... ...||.
T Consensus 86 ~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~------~~~fd~ 159 (283)
T PF01189_consen 86 GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKP------ESKFDR 159 (283)
T ss_dssp TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHH------TTTEEE
T ss_pred cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccc------ccccch
Confidence 56699999999999887776544223588999999999999887665543322222244443332211 125999
Q ss_pred EEEcCCCCCcCc
Q 006634 584 VICQNSVPQIPN 595 (637)
Q Consensus 584 VIGGpPCQ~FS~ 595 (637)
|+==+||.+...
T Consensus 160 VlvDaPCSg~G~ 171 (283)
T PF01189_consen 160 VLVDAPCSGLGT 171 (283)
T ss_dssp EEEECSCCCGGG
T ss_pred hhcCCCccchhh
Confidence 999999999864
No 131
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=85.12 E-value=2.1 Score=46.84 Aligned_cols=77 Identities=25% Similarity=0.251 Sum_probs=50.9
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCcccc-ccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQI-EDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~-~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.|-.|+|=|||.||+-+-.--.|.. ++++||+....+=-+.|....+-.+-.+.. .|.+++. +.+ ..|
T Consensus 197 ~G~~vlDPFcGTGgiLiEagl~G~~---viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp---l~~-----~~v 265 (347)
T COG1041 197 RGELVLDPFCGTGGILIEAGLMGAR---VIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP---LRD-----NSV 265 (347)
T ss_pred cCCEeecCcCCccHHHHhhhhcCce---EeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC---CCC-----Ccc
Confidence 3567999999999998888888874 678899998766555554332211221222 2666554 211 149
Q ss_pred cEEEEcCCC
Q 006634 582 DFVICQNSV 590 (637)
Q Consensus 582 DLVIGGpPC 590 (637)
|-|+.=||=
T Consensus 266 daIatDPPY 274 (347)
T COG1041 266 DAIATDPPY 274 (347)
T ss_pred ceEEecCCC
Confidence 999999983
No 132
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=85.10 E-value=0.63 Score=46.93 Aligned_cols=53 Identities=21% Similarity=0.227 Sum_probs=34.7
Q ss_pred hccccccCC--CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhh
Q 006634 494 LSVLKSMFP--GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 549 (637)
Q Consensus 494 lsvLK~~f~--~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~ 549 (637)
+..+.+++| ..-+++|+|||.|+..+.+...+ +.++..|+++.....++....
T Consensus 9 ~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~---~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 9 AKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPG---KRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp HHHHHHHS-S-S-SEEEETT-TTSHHHHCC---S---SEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCEEEEEecchhHHHHHhcccc---cceeeeechHHHHHHHHHHHh
Confidence 334455566 47889999999999988886644 467899999998887774443
No 133
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=85.09 E-value=2.9 Score=49.15 Aligned_cols=95 Identities=23% Similarity=0.179 Sum_probs=64.6
Q ss_pred CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhhcCCCCCCCcccCcCCCCCCCCCCCccCCCCCCCCCCccccchhhHH
Q 006634 1 MGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMDEGLHIEK 80 (637)
Q Consensus 1 MGF~~e~V~KaI~e~Ge~~~d~iLE~Lltysal~~~~s~ss~s~~~~~~d~~~~~~s~~~~~~~~~~e~~~~~~s~~~~~ 80 (637)
||||++--.||+==.|-.++++-.+-|+..- +|.+++|.-.-.+..-+.+.. +. ..+-
T Consensus 581 MGFp~eac~rAly~tgN~~aEaA~NWl~~HM------------dDpd~~~p~vvp~~~~~a~~~---~~-------~e~~ 638 (763)
T KOG0944|consen 581 MGFPEEACRRALYYTGNSGAEAASNWLMEHM------------DDPDIDDPFVVPGNSPKADAR---EV-------DEES 638 (763)
T ss_pred cCCCHHHHHHHHhhhcCccHHHHHHHHHHhc------------cCcccCCceecCCCCCccccC---CC-------ChhH
Confidence 9999999999999999999998888887763 223333321111000011100 11 1234
Q ss_pred HHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhh
Q 006634 81 RASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI 119 (637)
Q Consensus 81 ~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~ 119 (637)
+..++.|||++..+.+|+...-- .|+..+|.|+++--
T Consensus 639 v~si~smGf~~~qa~~aL~~~n~--nveravDWif~h~d 675 (763)
T KOG0944|consen 639 VASIVSMGFSRNQAIKALKATNN--NVERAVDWIFSHMD 675 (763)
T ss_pred heeeeeecCcHHHHHHHHHhcCc--cHHHHHHHHHhccc
Confidence 56789999999999999988754 47999999998743
No 134
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=85.07 E-value=2.2 Score=42.08 Aligned_cols=43 Identities=37% Similarity=0.359 Sum_probs=35.1
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHh
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 548 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~ 548 (637)
.+.+|||+-||.|.+...+.+.|.. ++++|+++......+...
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~---v~~iD~s~~~~~~a~~~~ 87 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGAN---VTGIDASEENIEVAKLHA 87 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHHHH
Confidence 3689999999999999988888763 789999998877666544
No 135
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=84.56 E-value=2.7 Score=45.43 Aligned_cols=77 Identities=19% Similarity=0.160 Sum_probs=46.4
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+.+|||+.||.|.++.-+.++.-.-..|+++|+++......+......+.....++.+|..+... ..+.+|
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~--------~~~~fD 151 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP--------EFAPYD 151 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc--------ccCCcc
Confidence 457899999999999888776431111378999999876665554433222222334556543211 123577
Q ss_pred EEEEc
Q 006634 583 FVICQ 587 (637)
Q Consensus 583 LVIGG 587 (637)
+|+-+
T Consensus 152 ~Ii~~ 156 (322)
T PRK13943 152 VIFVT 156 (322)
T ss_pred EEEEC
Confidence 77653
No 136
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=84.43 E-value=3.3 Score=42.96 Aligned_cols=77 Identities=17% Similarity=0.076 Sum_probs=48.6
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhh---hcCCCCCccccccccccChhhHHHhhhcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWE---SSGQTGELVQIEDIQALTTKKFESLIHKL 578 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~---~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~ 578 (637)
.+.+|||+-||.|.+...+.+. |-. ..++++|+++...+..+.... ........++.+|+.++.- ..
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~-~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~--------~~ 143 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSD-GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF--------DD 143 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC--------CC
Confidence 4678999999999998877653 422 247899999998777654221 0011112245667765541 12
Q ss_pred CCccEEEEcC
Q 006634 579 GSIDFVICQN 588 (637)
Q Consensus 579 g~~DLVIGGp 588 (637)
+.||+|+.+.
T Consensus 144 ~sfD~V~~~~ 153 (261)
T PLN02233 144 CYFDAITMGY 153 (261)
T ss_pred CCEeEEEEec
Confidence 4699998654
No 137
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=84.10 E-value=2.2 Score=43.33 Aligned_cols=74 Identities=12% Similarity=0.082 Sum_probs=48.9
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+-+|||+=||.|.+...|.+.. +-..+++||+++...+..+.... ...++.+|+.++.. ...+|
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~-----~~~~~~~d~~~~~~---------~~~fD 95 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLP-----DCQFVEADIASWQP---------PQALD 95 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCC-----CCeEEECchhccCC---------CCCcc
Confidence 46789999999999998887653 22357899999998877765321 12244566654421 12577
Q ss_pred EEEEcCCCC
Q 006634 583 FVICQNSVP 591 (637)
Q Consensus 583 LVIGGpPCQ 591 (637)
+|+.....+
T Consensus 96 ~v~~~~~l~ 104 (258)
T PRK01683 96 LIFANASLQ 104 (258)
T ss_pred EEEEccChh
Confidence 777665443
No 138
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=83.95 E-value=1.2 Score=43.10 Aligned_cols=39 Identities=33% Similarity=0.446 Sum_probs=31.3
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHH
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL 544 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~ 544 (637)
.+=.|||.|+|.|.-.++..++|-+ .+++|+++..+++.
T Consensus 191 ~gdiVlDpF~GSGTT~~aa~~l~R~---~ig~E~~~~y~~~a 229 (231)
T PF01555_consen 191 PGDIVLDPFAGSGTTAVAAEELGRR---YIGIEIDEEYCEIA 229 (231)
T ss_dssp TT-EEEETT-TTTHHHHHHHHTT-E---EEEEESSHHHHHHH
T ss_pred cceeeehhhhccChHHHHHHHcCCe---EEEEeCCHHHHHHh
Confidence 4567999999999999999999954 68999999987654
No 139
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=83.91 E-value=3.2 Score=40.83 Aligned_cols=75 Identities=21% Similarity=0.170 Sum_probs=49.1
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCcc
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
+.+|||+-||.|++...+.+.+-....++++|+++......+.++...+.. ...+...|+.++.. ..+.+|
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~D 123 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF--------PDNSFD 123 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC--------CCCCcc
Confidence 578999999999999988887621235789999998877777665432111 12234456654321 124678
Q ss_pred EEEE
Q 006634 583 FVIC 586 (637)
Q Consensus 583 LVIG 586 (637)
+|+.
T Consensus 124 ~I~~ 127 (239)
T PRK00216 124 AVTI 127 (239)
T ss_pred EEEE
Confidence 8764
No 140
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=83.86 E-value=3.6 Score=40.59 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=36.2
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhh
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 549 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~ 549 (637)
+.+|||+=||.|-.++-|.+.|.. |+++|+++.+.+..+....
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~~---V~~iD~s~~~l~~a~~~~~ 73 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGYD---VRAWDHNPASIASVLDMKA 73 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHH
Confidence 468999999999999999888863 7899999998887766543
No 141
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=83.48 E-value=2.6 Score=42.85 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=34.9
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHH
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL 544 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~ 544 (637)
+.+-+||++.||.|--.+-|.+.|+. |++||+++.|++.+
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~~---V~avD~s~~Ai~~~ 75 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGHE---VLGVELSELAVEQF 75 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCCe---EEEEccCHHHHHHH
Confidence 34579999999999999999999985 78999999998764
No 142
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=83.42 E-value=1.6 Score=34.23 Aligned_cols=33 Identities=21% Similarity=0.383 Sum_probs=26.5
Q ss_pred hHHHHHhcCCCHHHHHHHHHhh--CCCCChhhhhh
Q 006634 152 ITLQLLEMGFSENQVSLAIEKF--GSKTPISELAD 184 (637)
Q Consensus 152 k~~~L~~MGfseeEas~Ai~r~--G~da~i~eLvD 184 (637)
-+..|++.||++.||..|+.+. +++.++++++-
T Consensus 6 ~~~AL~~LGy~~~e~~~av~~~~~~~~~~~e~~ik 40 (47)
T PF07499_consen 6 ALEALISLGYSKAEAQKAVSKLLEKPGMDVEELIK 40 (47)
T ss_dssp HHHHHHHTTS-HHHHHHHHHHHHHSTTS-HHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHHHHH
Confidence 3458999999999999999999 88888888753
No 143
>PRK14135 recX recombination regulator RecX; Provisional
Probab=83.03 E-value=13 Score=38.31 Aligned_cols=82 Identities=18% Similarity=0.275 Sum_probs=50.8
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHh--hhcccccccCCCCCCCCCCCCCCCCcccccchhhhHH
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA--QISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITL 154 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~--q~~~~~~~e~~d~~~d~d~~~~e~~~e~~~~~~~k~~ 154 (637)
..+...+|..-||+.+.|..||+++..+...++-.+.+... ....... . ..+ .....|+.
T Consensus 178 k~Ki~~~L~rkGf~~~~I~~~l~~~~~e~d~~~e~e~l~~~~~k~~~k~~-~--------------~~~---~k~k~K~~ 239 (263)
T PRK14135 178 KQKIIQSLLTKGFSYEVIKAALEELDLEQDEEEEQELLQKELEKAYRKYS-K--------------YDG---YELKQKLK 239 (263)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHHHh-c--------------CCH---HHHHHHHH
Confidence 34566889999999999999999997543222222222211 1111111 0 000 11235665
Q ss_pred -HHHhcCCCHHHHHHHHHhhCCC
Q 006634 155 -QLLEMGFSENQVSLAIEKFGSK 176 (637)
Q Consensus 155 -~L~~MGfseeEas~Ai~r~G~d 176 (637)
+|..=||+-+.+..+|..+..+
T Consensus 240 ~~L~rrGF~~~~I~~~l~~~~~~ 262 (263)
T PRK14135 240 QALYRKGFSYDDIDSFLREYGIE 262 (263)
T ss_pred HHHHHCCCCHHHHHHHHHHhccC
Confidence 9999999999999999887543
No 144
>PRK00811 spermidine synthase; Provisional
Probab=82.95 E-value=3.4 Score=43.47 Aligned_cols=78 Identities=15% Similarity=0.224 Sum_probs=53.0
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcC-----CCCCccccccccccChhhHHHhh
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQALTTKKFESLI 575 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn-----~~g~l~~~~DI~~Lt~~~Ie~l~ 575 (637)
+++-+||+|-+|.|++..-+.+. +. +.|+.||+|+...+..+.|+...+ .+...++.+|..+.-.
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~--~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~------- 145 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSV--EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA------- 145 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCC--CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh-------
Confidence 45678999999999998766554 54 468899999999999998875321 1122244566544211
Q ss_pred hccCCccEEEEcC
Q 006634 576 HKLGSIDFVICQN 588 (637)
Q Consensus 576 ~~~g~~DLVIGGp 588 (637)
...+.+|+|+.-.
T Consensus 146 ~~~~~yDvIi~D~ 158 (283)
T PRK00811 146 ETENSFDVIIVDS 158 (283)
T ss_pred hCCCcccEEEECC
Confidence 1235799999754
No 145
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=82.51 E-value=3.9 Score=44.31 Aligned_cols=81 Identities=15% Similarity=0.231 Sum_probs=49.2
Q ss_pred CCCcccccCCCCChHHHHHH--HcCCceeeEEEeecCHHHHHHHHHHhhhc-CCCCCc--cccccccccChhhHHHhhhc
Q 006634 503 GGLTMLSVFSGIGGAEVTLH--RLGIKLKGVISIETSETNRRILKRWWESS-GQTGEL--VQIEDIQALTTKKFESLIHK 577 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~--~aGi~~k~vvaVEid~~a~~t~r~~~~~t-n~~g~l--~~~~DI~~Lt~~~Ie~l~~~ 577 (637)
.+.++|||=||+|++..-+- .-|. .++++|||+.+...-+.+-... +-.+.+ +...|...+- ..+...
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~---~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~----~~i~~~ 186 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGW---RFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIF----KGIIHK 186 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCC---EEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhh----hccccc
Confidence 45889999999998865443 3354 3689999999999888766543 111211 1112222211 111112
Q ss_pred cCCccEEEEcCCC
Q 006634 578 LGSIDFVICQNSV 590 (637)
Q Consensus 578 ~g~~DLVIGGpPC 590 (637)
.+.||+|+.=||=
T Consensus 187 ~~~fDlivcNPPf 199 (321)
T PRK11727 187 NERFDATLCNPPF 199 (321)
T ss_pred CCceEEEEeCCCC
Confidence 3579999999883
No 146
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=82.00 E-value=4 Score=42.56 Aligned_cols=83 Identities=18% Similarity=0.176 Sum_probs=53.0
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.|.+|||+-||.|=+.+.+.+..=.. -|+++|+++.-.++-+.-..+.+..+.-++.+|..+|.= .-..||
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g-~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf--------~D~sFD 121 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTG-EVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPF--------PDNSFD 121 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCc-eEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCC--------CCCccC
Confidence 58999999999999999887643133 468999999987766653332211112234566655542 114688
Q ss_pred EEEEcCCCCCcC
Q 006634 583 FVICQNSVPQIP 594 (637)
Q Consensus 583 LVIGGpPCQ~FS 594 (637)
+|+-++==+++.
T Consensus 122 ~vt~~fglrnv~ 133 (238)
T COG2226 122 AVTISFGLRNVT 133 (238)
T ss_pred EEEeeehhhcCC
Confidence 888776444443
No 147
>PLN02672 methionine S-methyltransferase
Probab=81.93 E-value=2.5 Score=52.46 Aligned_cols=46 Identities=9% Similarity=0.005 Sum_probs=37.4
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhh
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 550 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~ 550 (637)
+.+|+||-||.|-+.+.+...+=. ..++++||++.+....+.|...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~Al~~A~~Na~~ 164 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRAVKVAWINLYL 164 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHH
Confidence 358999999999999998776422 3578999999999988887653
No 148
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=81.84 E-value=2.4 Score=41.71 Aligned_cols=83 Identities=18% Similarity=0.078 Sum_probs=53.1
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
...++|||=||.|.+.+.+.+.. +-..++++|+++......++.....+.....++.+|+.++.... ...+.+|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~-----~~~~~~d 89 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKF-----FPDGSLS 89 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhh-----CCCCcee
Confidence 34579999999999998888764 22357899999987766655544332222234556765542111 1124689
Q ss_pred EEEEcCCCC
Q 006634 583 FVICQNSVP 591 (637)
Q Consensus 583 LVIGGpPCQ 591 (637)
.|+--+|..
T Consensus 90 ~v~~~~pdp 98 (194)
T TIGR00091 90 KVFLNFPDP 98 (194)
T ss_pred EEEEECCCc
Confidence 998877643
No 149
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=81.63 E-value=2.9 Score=42.93 Aligned_cols=77 Identities=22% Similarity=0.246 Sum_probs=44.4
Q ss_pred CCCcccccCCCCChHHHHHHH-cCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~-aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+.+|||+-||.|=++..+.+ +|-.. -|+++|+++.-.+.-+.-..+.......++.+|..++.-. -..|
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~-~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~--------d~sf 117 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNG-KVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFP--------DNSF 117 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS----EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S---------TT-E
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCcc-EEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCC--------CCce
Confidence 467999999999999888765 45332 4789999999887776543322222222456777776532 1469
Q ss_pred cEEEEcC
Q 006634 582 DFVICQN 588 (637)
Q Consensus 582 DLVIGGp 588 (637)
|+|+.++
T Consensus 118 D~v~~~f 124 (233)
T PF01209_consen 118 DAVTCSF 124 (233)
T ss_dssp EEEEEES
T ss_pred eEEEHHh
Confidence 9998766
No 150
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=81.15 E-value=3.5 Score=40.14 Aligned_cols=74 Identities=14% Similarity=0.052 Sum_probs=45.2
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh--ccC
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH--KLG 579 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~--~~g 579 (637)
+.+-+|||+=||.||++..+.+....-..++++|+++.. + ..+..++..|+.+... ++.+.. ..+
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~-------~~~i~~~~~d~~~~~~--~~~l~~~~~~~ 97 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----P-------IENVDFIRGDFTDEEV--LNKIRERVGDD 97 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----c-------CCCceEEEeeCCChhH--HHHHHHHhCCC
Confidence 346789999999999998877654322347899999853 1 1122244567765321 222211 124
Q ss_pred CccEEEEcC
Q 006634 580 SIDFVICQN 588 (637)
Q Consensus 580 ~~DLVIGGp 588 (637)
.+|+|+..+
T Consensus 98 ~~D~V~~~~ 106 (188)
T TIGR00438 98 KVDVVMSDA 106 (188)
T ss_pred CccEEEcCC
Confidence 699999643
No 151
>PRK14135 recX recombination regulator RecX; Provisional
Probab=81.06 E-value=27 Score=36.12 Aligned_cols=82 Identities=15% Similarity=0.175 Sum_probs=51.2
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCcccccchhhhHH-HH
Q 006634 78 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITL-QL 156 (637)
Q Consensus 78 ~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~~~~~~~e~~d~~~d~d~~~~e~~~e~~~~~~~k~~-~L 156 (637)
-+....|...||+.+.|..||+++-++.-++.+..+ ... ....... .+. ...-.|+. +|
T Consensus 126 ~~I~~kL~~kGi~~~~Ie~~l~~l~~~~~~d~a~~~-~~k-~~~~~~~---------------~~~---~~~k~Ki~~~L 185 (263)
T PRK14135 126 RVIKQKLLQKGIEDEIIEEALSEYTEEDQIEVAQKL-AEK-LLKKYQK---------------LPF---KALKQKIIQSL 185 (263)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhCChhhHHHHHHHH-HHH-HHHHhcC---------------CCH---HHHHHHHHHHH
Confidence 356678999999999999999999554433322211 111 1111000 000 01224554 89
Q ss_pred HhcCCCHHHHHHHHHhhCCCCCh
Q 006634 157 LEMGFSENQVSLAIEKFGSKTPI 179 (637)
Q Consensus 157 ~~MGfseeEas~Ai~r~G~da~i 179 (637)
..-||+.+.+..|++.+..+...
T Consensus 186 ~rkGf~~~~I~~~l~~~~~e~d~ 208 (263)
T PRK14135 186 LTKGFSYEVIKAALEELDLEQDE 208 (263)
T ss_pred HhCCCCHHHHHHHHHHcccCCCh
Confidence 99999999999999999765433
No 152
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=80.78 E-value=4.9 Score=41.83 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=36.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhh
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 550 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~ 550 (637)
++-+||+|.+|.|++...+.+.+ ....+..||+|+...+..+.++..
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~ 118 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPS 118 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHh
Confidence 44599999999999887776654 235688999999998888887643
No 153
>PRK08317 hypothetical protein; Provisional
Probab=80.76 E-value=5.5 Score=38.81 Aligned_cols=45 Identities=27% Similarity=0.184 Sum_probs=33.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHH
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW 547 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~ 547 (637)
.+.+|||+-||.|++...+.+...+...++++|+++......+..
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~ 63 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER 63 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Confidence 467899999999999888876532223578999999876655543
No 154
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=80.62 E-value=4.3 Score=41.01 Aligned_cols=42 Identities=21% Similarity=0.206 Sum_probs=35.1
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHh
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 548 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~ 548 (637)
+-++|||=||-|.=++=|.+.|+. |.|+|+++.+...++..-
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~---VtAvD~s~~al~~l~~~a 72 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFD---VTAVDISPVALEKLQRLA 72 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-E---EEEEESSHHHHHHHHHHH
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCe---EEEEECCHHHHHHHHHHH
Confidence 468999999999999999999995 789999999988777643
No 155
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=80.55 E-value=2.5 Score=40.75 Aligned_cols=81 Identities=19% Similarity=0.188 Sum_probs=49.4
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccCh-hhHHHhhh-ccCC
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT-KKFESLIH-KLGS 580 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~-~~Ie~l~~-~~g~ 580 (637)
.+.+||||-|+.||++..+.+.+-.-..|++||+.+.. ..++...+.+||.+... +.|..... ..+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~-----------~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD-----------PLQNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG-----------S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc-----------cccceeeeecccchhhHHHhhhhhccccccC
Confidence 45999999999999998888877334568999998772 12233456788866533 22333222 1258
Q ss_pred ccEEE--EcCCCCCcC
Q 006634 581 IDFVI--CQNSVPQIP 594 (637)
Q Consensus 581 ~DLVI--GGpPCQ~FS 594 (637)
+|+|+ |+|+|++..
T Consensus 92 ~dlv~~D~~~~~~g~~ 107 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGDR 107 (181)
T ss_dssp ESEEEE-------SSH
T ss_pred cceeccccccCCCCch
Confidence 99998 556777653
No 156
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.23 E-value=2.5 Score=47.72 Aligned_cols=78 Identities=18% Similarity=0.224 Sum_probs=51.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCcccccchh--hhHHHH
Q 006634 79 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTM--EITLQL 156 (637)
Q Consensus 79 ~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~~~~~~~e~~d~~~d~d~~~~e~~~e~~~~~~--~k~~~L 156 (637)
.-+..|++|||..+.|..|+.+.-.+ +..-||.+-..+. .+. ..-..+.... .++..|
T Consensus 377 rs~~rL~~mGyer~la~eaL~r~~Nd--i~~aldllq~esd----------el~--------~n~~~~p~~vd~~~la~L 436 (568)
T KOG2561|consen 377 RSLERLVSMGYERELAAEALRRNEND--IQKALDLLQDESD----------ELE--------SNKPKRPEQVDGISLAEL 436 (568)
T ss_pred HHHHHHHhcchHhHHHHHHHHhccCc--HHHHHHhcCCcch----------hhh--------ccCCCCCcccchhhHHHH
Confidence 44668999999999999999997543 4455554422211 000 0000111222 345599
Q ss_pred HhcCCCHHHHHHHHHhhCCC
Q 006634 157 LEMGFSENQVSLAIEKFGSK 176 (637)
Q Consensus 157 ~~MGfseeEas~Ai~r~G~d 176 (637)
+.|||.+--|..|++-.|..
T Consensus 437 v~mGF~e~~A~~ALe~~gnn 456 (568)
T KOG2561|consen 437 VSMGFEEGKARSALEAGGNN 456 (568)
T ss_pred HHhccccchHHHHHHhcCCc
Confidence 99999999999999999986
No 157
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=80.09 E-value=6.7 Score=42.83 Aligned_cols=89 Identities=17% Similarity=0.171 Sum_probs=59.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCc-eeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIK-LKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~-~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+-+|||+.|+.||=+.-+-++.-+ -.+|+|+|+++.-.+.++.+-..-+.....+...|=+.+.. .....+.|
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~-----~~~~~~~f 230 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAE-----LLPGGEKF 230 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccc-----cccccCcC
Confidence 3589999999999998887776643 23469999999988888876654432222233333332221 11111249
Q ss_pred cEEEEcCCCCCcCcc
Q 006634 582 DFVICQNSVPQIPNS 596 (637)
Q Consensus 582 DLVIGGpPCQ~FS~s 596 (637)
|.|.-=+||.+....
T Consensus 231 D~iLlDaPCSg~G~i 245 (355)
T COG0144 231 DRILLDAPCSGTGVI 245 (355)
T ss_pred cEEEECCCCCCCccc
Confidence 999999999998863
No 158
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=79.71 E-value=2.2 Score=41.80 Aligned_cols=47 Identities=17% Similarity=0.137 Sum_probs=34.0
Q ss_pred ccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHH
Q 006634 497 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILK 545 (637)
Q Consensus 497 LK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r 545 (637)
+.++.+.+.+|||+-||.|.+...+.+.+. . .++++|+++.+.+..+
T Consensus 7 i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~-~-~~~giD~s~~~i~~a~ 53 (194)
T TIGR02081 7 ILNLIPPGSRVLDLGCGDGELLALLRDEKQ-V-RGYGIEIDQDGVLACV 53 (194)
T ss_pred HHHhcCCCCEEEEeCCCCCHHHHHHHhccC-C-cEEEEeCCHHHHHHHH
Confidence 344445667899999999999988865432 1 3579999998766543
No 159
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=79.71 E-value=3.8 Score=43.24 Aligned_cols=76 Identities=17% Similarity=0.140 Sum_probs=56.5
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 583 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 583 (637)
+-+||++=+|.|+++..|-+.|- .|+|+|||+..+.+++..... .....++.+|+-+++-..+. .++.
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~~--~~n~~vi~~DaLk~d~~~l~-------~~~~ 98 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAA---RVTAIEIDRRLAEVLKERFAP--YDNLTVINGDALKFDFPSLA-------QPYK 98 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcC---eEEEEEeCHHHHHHHHHhccc--ccceEEEeCchhcCcchhhc-------CCCE
Confidence 57899999999999999999985 378999999999999875421 11123567898877643321 4677
Q ss_pred EEEcCCCC
Q 006634 584 VICQNSVP 591 (637)
Q Consensus 584 VIGGpPCQ 591 (637)
|+|--|=+
T Consensus 99 vVaNlPY~ 106 (259)
T COG0030 99 VVANLPYN 106 (259)
T ss_pred EEEcCCCc
Confidence 88777744
No 160
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=79.55 E-value=3.1 Score=42.29 Aligned_cols=98 Identities=20% Similarity=0.182 Sum_probs=60.3
Q ss_pred cccchhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccc
Q 006634 486 QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA 565 (637)
Q Consensus 486 qvdtv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~ 565 (637)
+...+++.+..|+ ...+.+||++-||.|=++.-|-.+.=+.-.|++||+++.....-+.++...+.....+..+|...
T Consensus 57 ~P~~~a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~ 134 (209)
T PF01135_consen 57 APSMVARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSE 134 (209)
T ss_dssp -HHHHHHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGG
T ss_pred HHHHHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhh
Confidence 3446666777776 44689999999999987777666522222478999999877766766654433233355666543
Q ss_pred cChhhHHHhhhccCCccEEEEcCCCCCc
Q 006634 566 LTTKKFESLIHKLGSIDFVICQNSVPQI 593 (637)
Q Consensus 566 Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~F 593 (637)
--. ..++||.|+-+.-|...
T Consensus 135 g~~--------~~apfD~I~v~~a~~~i 154 (209)
T PF01135_consen 135 GWP--------EEAPFDRIIVTAAVPEI 154 (209)
T ss_dssp TTG--------GG-SEEEEEESSBBSS-
T ss_pred ccc--------cCCCcCEEEEeeccchH
Confidence 221 24689999988766544
No 161
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=79.34 E-value=7.4 Score=37.16 Aligned_cols=68 Identities=15% Similarity=0.108 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhhcCCCCCCCcccCcCCCCCCCCCCCccCCCCCCCCCCccccchhhHHH
Q 006634 2 GFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMDEGLHIEKR 81 (637)
Q Consensus 2 GF~~e~V~KaI~e~Ge~~~d~iLE~Lltysal~~~~s~ss~s~~~~~~d~~~~~~s~~~~~~~~~~e~~~~~~s~~~~~~ 81 (637)
||+.++|..||++..+++.+.++..+-..- . + ... .+. ....+.+
T Consensus 89 Gi~~~~I~~~l~~~~~d~~e~a~~~~~k~~--~---~--------------------~~~----~~~------~~k~Ki~ 133 (157)
T PRK00117 89 GVDREIIEEALAELDIDWEELARELARKKF--R---R--------------------PLP----DDA------KEKAKLV 133 (157)
T ss_pred CCCHHHHHHHHHHcCccHHHHHHHHHHHHc--C---C--------------------CCC----CCH------HHHHHHH
Confidence 999999999999987544444444333321 0 0 000 000 1355778
Q ss_pred HHHHhcCCCHHHHHHHHHHhCCC
Q 006634 82 ASLLMMNFSVNEVDFALDKLGKD 104 (637)
Q Consensus 82 ~~lv~MGF~~eeV~~AI~~~G~d 104 (637)
.+|+.=||+-+.|..||++..++
T Consensus 134 ~~L~rkGF~~~~I~~~l~~~~~~ 156 (157)
T PRK00117 134 RFLARRGFSMDVIQRVLRNALDD 156 (157)
T ss_pred HHHHHCCCCHHHHHHHHHhhhcc
Confidence 89999999999999999987664
No 162
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=78.99 E-value=4.8 Score=41.34 Aligned_cols=77 Identities=23% Similarity=0.233 Sum_probs=46.4
Q ss_pred CCCCcccccCCCCChHHHHH-HHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006634 502 PGGLTMLSVFSGIGGAEVTL-HRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL-~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
+.+-+|||+=||.|...+-+ ...|-. ..++++|+++......+.+....+.....+..+|+.++.- ..+.
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~-~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~--------~~~~ 146 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPT-GKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPV--------ADNS 146 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCC--------CCCc
Confidence 35679999999997655433 344543 2478999999988877765543222122234466655431 1236
Q ss_pred ccEEEEc
Q 006634 581 IDFVICQ 587 (637)
Q Consensus 581 ~DLVIGG 587 (637)
||+|+..
T Consensus 147 fD~Vi~~ 153 (272)
T PRK11873 147 VDVIISN 153 (272)
T ss_pred eeEEEEc
Confidence 7877744
No 163
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=78.83 E-value=6.2 Score=42.55 Aligned_cols=73 Identities=12% Similarity=0.178 Sum_probs=50.2
Q ss_pred cccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEE
Q 006634 506 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI 585 (637)
Q Consensus 506 ~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVI 585 (637)
+|+||=||.|=+.+.+.+..= ..-+.-||+|..|.+.-+.++..++-.+..+...|+-+ .+ .+.||+||
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~----~v------~~kfd~Ii 229 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE----PV------EGKFDLII 229 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc----cc------cccccEEE
Confidence 899999999988777776652 23467899999999998888764432222233444321 11 23699999
Q ss_pred EcCC
Q 006634 586 CQNS 589 (637)
Q Consensus 586 GGpP 589 (637)
.-||
T Consensus 230 sNPP 233 (300)
T COG2813 230 SNPP 233 (300)
T ss_pred eCCC
Confidence 8887
No 164
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=77.18 E-value=5.5 Score=40.11 Aligned_cols=84 Identities=21% Similarity=0.203 Sum_probs=66.7
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc--C
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL--G 579 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~--g 579 (637)
..++.||+|=.|.|-++.++-+-|++-..+.++|++++-...|..- .++..++.+|.-.+.. ..+++ .
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~-----~p~~~ii~gda~~l~~-----~l~e~~gq 116 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL-----YPGVNIINGDAFDLRT-----TLGEHKGQ 116 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh-----CCCccccccchhhHHH-----HHhhcCCC
Confidence 4678999999999999999999999999999999999987777653 3455566777665543 22222 3
Q ss_pred CccEEEEcCCCCCcCc
Q 006634 580 SIDFVICQNSVPQIPN 595 (637)
Q Consensus 580 ~~DLVIGGpPCQ~FS~ 595 (637)
.||.||.|=|--+|+.
T Consensus 117 ~~D~viS~lPll~~P~ 132 (194)
T COG3963 117 FFDSVISGLPLLNFPM 132 (194)
T ss_pred eeeeEEeccccccCcH
Confidence 5899999999999985
No 165
>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=76.96 E-value=0.9 Score=46.25 Aligned_cols=16 Identities=38% Similarity=0.752 Sum_probs=14.0
Q ss_pred CCCCcccccCCCCChH
Q 006634 502 PGGLTMLSVFSGIGGA 517 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGl 517 (637)
.+.+..||+|||||||
T Consensus 187 ~~~LaTLDIFAGCGGL 202 (202)
T cd04708 187 ENRLATLDIFAGCGGL 202 (202)
T ss_pred ccccceeeeecccCCC
Confidence 3568999999999996
No 166
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=76.81 E-value=1.9 Score=35.56 Aligned_cols=29 Identities=31% Similarity=0.511 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHHHHhCCC--------CHHHHHHHHHH
Q 006634 1 MGFSPSLVDKVIEEKGQD--------NVDLLLETLIE 29 (637)
Q Consensus 1 MGF~~e~V~KaI~e~Ge~--------~~d~iLE~Llt 29 (637)
|||+.+.|..|++.-|=. ..+.|||.||.
T Consensus 19 mGF~~dkVvevlrrlgik~~n~~dn~t~~~ilEELLk 55 (55)
T PF09288_consen 19 MGFERDKVVEVLRRLGIKSMNGVDNETENKILEELLK 55 (55)
T ss_dssp HT--HHHHHHHHHHS--SS--SS--HHHHHHHHHHT-
T ss_pred cCCcHHHHHHHHHHhCCCCCCCccchhHHHHHHHHhC
Confidence 899999999999987622 24589999984
No 167
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=76.58 E-value=7 Score=32.21 Aligned_cols=67 Identities=22% Similarity=0.272 Sum_probs=44.8
Q ss_pred cccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEEE
Q 006634 508 LSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVIC 586 (637)
Q Consensus 508 LsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIG 586 (637)
||+=||.|-....|.+. +. .++++|+++...+..+.+.... +..+...|+.++.-. .+.||+|+.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~---~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~--------~~sfD~v~~ 66 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGA---SVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFP--------DNSFDVVFS 66 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTC---EEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS---------TT-EEEEEE
T ss_pred CEecCcCCHHHHHHHhccCC---EEEEEeCCHHHHHHHHhccccc---CchheeehHHhCccc--------ccccccccc
Confidence 56778999999999988 54 5789999999888777655332 222567777777421 257999985
Q ss_pred cC
Q 006634 587 QN 588 (637)
Q Consensus 587 Gp 588 (637)
..
T Consensus 67 ~~ 68 (95)
T PF08241_consen 67 NS 68 (95)
T ss_dssp ES
T ss_pred cc
Confidence 44
No 168
>PRK06922 hypothetical protein; Provisional
Probab=76.40 E-value=5.5 Score=47.19 Aligned_cols=86 Identities=20% Similarity=0.163 Sum_probs=53.7
Q ss_pred ccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh
Q 006634 497 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH 576 (637)
Q Consensus 497 LK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~ 576 (637)
+.++.+ +.+|||+.||.|.+...+.+.. +-.-++++|+++.+....+...... .....++.+|+.++.. .+
T Consensus 413 i~d~~~-g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~-g~~ie~I~gDa~dLp~-~f----- 483 (677)
T PRK06922 413 ILDYIK-GDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNE-GRSWNVIKGDAINLSS-SF----- 483 (677)
T ss_pred HhhhcC-CCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhc-CCCeEEEEcchHhCcc-cc-----
Confidence 344443 6799999999999988776642 2235789999999887776543221 1111234566655421 11
Q ss_pred ccCCccEEEEcCCCC
Q 006634 577 KLGSIDFVICQNSVP 591 (637)
Q Consensus 577 ~~g~~DLVIGGpPCQ 591 (637)
..+.||+|+..++-+
T Consensus 484 edeSFDvVVsn~vLH 498 (677)
T PRK06922 484 EKESVDTIVYSSILH 498 (677)
T ss_pred CCCCEEEEEEchHHH
Confidence 125799999876543
No 169
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=75.85 E-value=6.4 Score=40.26 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=42.1
Q ss_pred CCCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCcccccccccc
Q 006634 501 FPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQAL 566 (637)
Q Consensus 501 f~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~L 566 (637)
.+.+.+|||+=||.|.....+.+. ..+--.++++|+++...+..+......+.. ...++.+|+.++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~ 121 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI 121 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC
Confidence 346688999999999998877652 111124789999999887776654332211 122345666543
No 170
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=75.46 E-value=5.2 Score=40.80 Aligned_cols=73 Identities=12% Similarity=0.100 Sum_probs=48.6
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+-+|||+=||.|.+...|.+..-. ..++++|+++...+..+. . +..++.+|+.++.. .+.||
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~-~~v~gvD~s~~~~~~a~~----~---~~~~~~~d~~~~~~---------~~~fD 91 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPG-AVIEALDSSPEMVAAARE----R---GVDARTGDVRDWKP---------KPDTD 91 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHh----c---CCcEEEcChhhCCC---------CCCce
Confidence 4578999999999999888876311 247899999998765542 1 22245566654421 13678
Q ss_pred EEEEcCCCCC
Q 006634 583 FVICQNSVPQ 592 (637)
Q Consensus 583 LVIGGpPCQ~ 592 (637)
+|+.....+-
T Consensus 92 ~v~~~~~l~~ 101 (255)
T PRK14103 92 VVVSNAALQW 101 (255)
T ss_pred EEEEehhhhh
Confidence 8877665443
No 171
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=75.43 E-value=10 Score=43.59 Aligned_cols=81 Identities=22% Similarity=0.270 Sum_probs=56.5
Q ss_pred CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhhcCCCCCCCcccCcCCCCCCCCCCCccCCCCCCCCCCccccchhhHH
Q 006634 1 MGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMDEGLHIEK 80 (637)
Q Consensus 1 MGF~~e~V~KaI~e~Ge~~~d~iLE~Lltysal~~~~s~ss~s~~~~~~d~~~~~~s~~~~~~~~~~e~~~~~~s~~~~~ 80 (637)
||||.+--.||+=-.|-.|++.-++-|+..- +|.+.+| +.....+-|+.+. +-...+
T Consensus 568 mGfp~~~~~rAL~~tgNqDaEsAMNWLFqHM------------dDPdlnd------P~~~~~~vPKkDk-----eVdE~~ 624 (749)
T COG5207 568 MGFPEEDAARALGITGNQDAESAMNWLFQHM------------DDPDLND------PFVPPPNVPKKDK-----EVDESK 624 (749)
T ss_pred cCCCHHHHHHHHhhccCcchHHHHHHHHhhc------------cCcccCC------CCCCCCCCCcccc-----cccHHH
Confidence 9999999999999999999999999998773 2222332 2222222223222 223346
Q ss_pred HHHHHhcCCCHHHHHHHHHHhCCC
Q 006634 81 RASLLMMNFSVNEVDFALDKLGKD 104 (637)
Q Consensus 81 ~~~lv~MGF~~eeV~~AI~~~G~d 104 (637)
..+|+.|||.+...-||+=..--+
T Consensus 625 ~~Slle~Gln~n~~Rkal~~~n~d 648 (749)
T COG5207 625 ARSLLENGLNPNLCRKALMDMNTD 648 (749)
T ss_pred HHHHHHcCCCHHHHHHHHHHccCC
Confidence 789999999999999997655443
No 172
>PRK06202 hypothetical protein; Provisional
Probab=74.41 E-value=7.3 Score=39.12 Aligned_cols=44 Identities=25% Similarity=0.364 Sum_probs=34.0
Q ss_pred CCCCcccccCCCCChHHHHHHH----cCCceeeEEEeecCHHHHHHHHH
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHR----LGIKLKGVISIETSETNRRILKR 546 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~----aGi~~k~vvaVEid~~a~~t~r~ 546 (637)
..+.+||||=||.|++...|.+ .|... .++++|+++.+....+.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~-~v~gvD~s~~~l~~a~~ 106 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRL-EVTAIDPDPRAVAFARA 106 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCc-EEEEEcCCHHHHHHHHh
Confidence 3567899999999999887754 46543 47899999998776654
No 173
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=73.86 E-value=5 Score=36.69 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=34.3
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHH
Q 006634 501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRI 543 (637)
Q Consensus 501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t 543 (637)
.+.+.+|||+=||.|.+...|+..|+ -++++|+++.....
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK 59 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh
Confidence 35678999999999999999999998 36899999987644
No 174
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=73.86 E-value=6.3 Score=44.53 Aligned_cols=72 Identities=17% Similarity=0.203 Sum_probs=47.2
Q ss_pred CCcccccCCCCChHHHHHHHcC----CceeeEEEeecCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhcc
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLG----IKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKL 578 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aG----i~~k~vvaVEid~~a~~t~r~~~~~tn~-~g~l~~~~DI~~Lt~~~Ie~l~~~~ 578 (637)
...|+++=||-|-+....-+|| -. +-|+|||.++.|..+++..-...+- ....++.+|++++...+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a-~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-------- 257 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGA-VKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-------- 257 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCE-SEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--------
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCC-eEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC--------
Confidence 4679999999999987666665 22 3578999999998887543111111 22346789999987532
Q ss_pred CCccEEE
Q 006634 579 GSIDFVI 585 (637)
Q Consensus 579 g~~DLVI 585 (637)
.+||||
T Consensus 258 -kvDIIV 263 (448)
T PF05185_consen 258 -KVDIIV 263 (448)
T ss_dssp --EEEEE
T ss_pred -ceeEEE
Confidence 689976
No 175
>PRK04148 hypothetical protein; Provisional
Probab=73.67 E-value=9.4 Score=36.61 Aligned_cols=66 Identities=15% Similarity=0.161 Sum_probs=46.5
Q ss_pred CCcccccCCCCCh-HHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 504 GLTMLSVFSGIGG-AEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 504 ~l~vLsLFSGiGG-lslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
+.+++++=+|.|. +...|.++|++ |+++|+++.+....+.. +..+..+||.+-+.+ .++++|
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~~---ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~-------~y~~a~ 79 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGFD---VIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLE-------IYKNAK 79 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCCE---EEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHH-------HHhcCC
Confidence 4789999999876 78889999985 68999999987655432 334567787655432 134566
Q ss_pred EEEE
Q 006634 583 FVIC 586 (637)
Q Consensus 583 LVIG 586 (637)
+|--
T Consensus 80 liys 83 (134)
T PRK04148 80 LIYS 83 (134)
T ss_pred EEEE
Confidence 6643
No 176
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=72.85 E-value=6.6 Score=39.41 Aligned_cols=44 Identities=25% Similarity=0.299 Sum_probs=35.8
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHH
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRW 547 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~ 547 (637)
+.+-+|||+=||.|-....|.+. +. ..++++|+++.+.+..+.+
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~ 86 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAY 86 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhh
Confidence 45678999999999999999876 22 2478999999999888764
No 177
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=72.45 E-value=6.3 Score=42.00 Aligned_cols=41 Identities=29% Similarity=0.383 Sum_probs=37.4
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHH
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW 547 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~ 547 (637)
++++||.=||.|=++.-|-|+|. .|.++|+.+.+.++++..
T Consensus 90 g~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h 130 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEH 130 (282)
T ss_pred CceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHh
Confidence 68899999999999999999996 578999999999999865
No 178
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=72.01 E-value=5.9 Score=44.17 Aligned_cols=80 Identities=16% Similarity=0.171 Sum_probs=50.6
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 583 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 583 (637)
+-+||||-||.|.++..|.+.+. .++++|+++.+...-+.. +.......++..|+...... + ..+.||+
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~~---~v~giD~s~~~l~~a~~~--~~~~~~i~~~~~d~~~~~~~-~-----~~~~fD~ 106 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKAG---QVIALDFIESVIKKNESI--NGHYKNVKFMCADVTSPDLN-I-----SDGSVDL 106 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHH--hccCCceEEEEecccccccC-C-----CCCCEEE
Confidence 45899999999999999988764 468999999886543321 11111122445666432110 0 1246899
Q ss_pred EEEcCCCCCcC
Q 006634 584 VICQNSVPQIP 594 (637)
Q Consensus 584 VIGGpPCQ~FS 594 (637)
|+...++.-++
T Consensus 107 I~~~~~l~~l~ 117 (475)
T PLN02336 107 IFSNWLLMYLS 117 (475)
T ss_pred EehhhhHHhCC
Confidence 99887766543
No 179
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=71.98 E-value=6.1 Score=42.90 Aligned_cols=44 Identities=27% Similarity=0.406 Sum_probs=32.3
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHh
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 548 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~ 548 (637)
.+.+||||.||=||=-.=...+++ ..++++||+..+..-.+.-+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry 105 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERY 105 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHH
T ss_pred CCCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHH
Confidence 679999999999997666778887 46899999999887555544
No 180
>PRK03612 spermidine synthase; Provisional
Probab=71.89 E-value=9 Score=43.93 Aligned_cols=81 Identities=11% Similarity=0.055 Sum_probs=52.7
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHH--hhhcC-----CCCCccccccccccChhhHHHh
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW--WESSG-----QTGELVQIEDIQALTTKKFESL 574 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~--~~~tn-----~~g~l~~~~DI~~Lt~~~Ie~l 574 (637)
+++-+||++-+|.|++...+.+.+ .++.++.||||+...+..+.+ +..-| .+...++.+|.++. +.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~----l~-- 368 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNW----LR-- 368 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHH----HH--
Confidence 455789999999999987776654 235688999999999988873 22211 11222344555432 11
Q ss_pred hhccCCccEEEEcCCC
Q 006634 575 IHKLGSIDFVICQNSV 590 (637)
Q Consensus 575 ~~~~g~~DLVIGGpPC 590 (637)
...+.+|+|+.-+|-
T Consensus 369 -~~~~~fDvIi~D~~~ 383 (521)
T PRK03612 369 -KLAEKFDVIIVDLPD 383 (521)
T ss_pred -hCCCCCCEEEEeCCC
Confidence 112579999998764
No 181
>PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=71.49 E-value=7.3 Score=39.15 Aligned_cols=39 Identities=10% Similarity=0.176 Sum_probs=33.4
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHH
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT 115 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~ 115 (637)
.++.+..|+++||++.++.+|+.+..++.++++++-..+
T Consensus 145 ~~e~~~aL~~LGy~~~ea~~al~~v~~~~~~eelir~aL 183 (186)
T PRK14600 145 NDDALAALISLGYEKTKAFNAIQKIKPNLSTQDIIRKAL 183 (186)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 467889999999999999999999987777787776554
No 182
>PRK04266 fibrillarin; Provisional
Probab=70.51 E-value=12 Score=38.28 Aligned_cols=78 Identities=13% Similarity=0.132 Sum_probs=47.4
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+-+|||+-||.|+++..+.+.-=. -.|+++|+++...+.+...-.. .+....+.+|+.... ....+ ...||
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~~-g~V~avD~~~~ml~~l~~~a~~--~~nv~~i~~D~~~~~--~~~~l---~~~~D 143 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVEE-GVVYAVEFAPRPMRELLEVAEE--RKNIIPILADARKPE--RYAHV---VEKVD 143 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcCC-CeEEEEECCHHHHHHHHHHhhh--cCCcEEEECCCCCcc--hhhhc---cccCC
Confidence 4679999999999999888774201 2589999999766544332221 122234567776421 00111 13589
Q ss_pred EEEEcC
Q 006634 583 FVICQN 588 (637)
Q Consensus 583 LVIGGp 588 (637)
+|+-..
T Consensus 144 ~i~~d~ 149 (226)
T PRK04266 144 VIYQDV 149 (226)
T ss_pred EEEECC
Confidence 988543
No 183
>PRK13699 putative methylase; Provisional
Probab=69.36 E-value=7.5 Score=39.82 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=35.1
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHh
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 548 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~ 548 (637)
.+=.|||-|+|.|..-++..++|-+ .+++|+++...++....+
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~~r~---~~g~e~~~~y~~~~~~r~ 205 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQSGRR---YIGIELLEQYHRAGQQRL 205 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHcCCC---EEEEecCHHHHHHHHHHH
Confidence 4557999999999999999999974 578999998776654433
No 184
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=68.65 E-value=9.5 Score=38.76 Aligned_cols=77 Identities=19% Similarity=0.209 Sum_probs=51.4
Q ss_pred hccccccCCCCCcccccCCCCChHHHHHHH-cCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHH
Q 006634 494 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE 572 (637)
Q Consensus 494 lsvLK~~f~~~l~vLsLFSGiGGlslGL~~-aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie 572 (637)
|+.+.++-+.+-+||||=||-|-+=.-|.. .+. ..+++|||+......- ..|..++.+|+.+ .+.
T Consensus 4 ~~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v---~g~GvEid~~~v~~cv-------~rGv~Viq~Dld~----gL~ 69 (193)
T PF07021_consen 4 LQIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQV---DGYGVEIDPDNVAACV-------ARGVSVIQGDLDE----GLA 69 (193)
T ss_pred HHHHHHHcCCCCEEEecCCCchHHHHHHHHhcCC---eEEEEecCHHHHHHHH-------HcCCCEEECCHHH----hHh
Confidence 445566677789999999999988766665 454 3689999999754432 2355577888754 122
Q ss_pred HhhhccCCccEEEE
Q 006634 573 SLIHKLGSIDFVIC 586 (637)
Q Consensus 573 ~l~~~~g~~DLVIG 586 (637)
.+ .-+.||.||-
T Consensus 70 ~f--~d~sFD~VIl 81 (193)
T PF07021_consen 70 DF--PDQSFDYVIL 81 (193)
T ss_pred hC--CCCCccEEeh
Confidence 11 1256888874
No 185
>PLN02476 O-methyltransferase
Probab=67.93 E-value=14 Score=39.41 Aligned_cols=93 Identities=17% Similarity=0.233 Sum_probs=57.9
Q ss_pred hhhhccccccCCCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCC-ccccccccccCh
Q 006634 491 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTT 568 (637)
Q Consensus 491 ~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~-l~~~~DI~~Lt~ 568 (637)
+.+|..|-.+. +.-+||++.+|+|..++.+-++ +=. -.++++|+++...++-+.+|...+.... .++.+|..+
T Consensus 107 g~lL~~L~~~~-~ak~VLEIGT~tGySal~lA~al~~~-G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e--- 181 (278)
T PLN02476 107 AQLLAMLVQIL-GAERCIEVGVYTGYSSLAVALVLPES-GCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE--- 181 (278)
T ss_pred HHHHHHHHHhc-CCCeEEEecCCCCHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH---
Confidence 44444444443 3568999999999998887653 211 1378999999999999999987653311 123455432
Q ss_pred hhHHHhhh--ccCCccEEEEcCC
Q 006634 569 KKFESLIH--KLGSIDFVICQNS 589 (637)
Q Consensus 569 ~~Ie~l~~--~~g~~DLVIGGpP 589 (637)
.|+.+.. ..+.||+|+=..+
T Consensus 182 -~L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 182 -SLKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred -HHHHHHhcccCCCCCEEEECCC
Confidence 2333221 1257888765544
No 186
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=67.85 E-value=11 Score=38.98 Aligned_cols=70 Identities=13% Similarity=0.067 Sum_probs=45.6
Q ss_pred CCcccccCCCCChHHHHHHHcCCc--eeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIK--LKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~--~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
..+|||+=||.|.+...|.+..-. ...++++|+++.+.+..+.. .+...+..+|+.++.- ..+.|
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----~~~~~~~~~d~~~lp~--------~~~sf 152 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----YPQVTFCVASSHRLPF--------ADQSL 152 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----CCCCeEEEeecccCCC--------cCCce
Confidence 367999999999998888654211 01478999999988766432 2222345667766542 12468
Q ss_pred cEEEE
Q 006634 582 DFVIC 586 (637)
Q Consensus 582 DLVIG 586 (637)
|+|+.
T Consensus 153 D~I~~ 157 (272)
T PRK11088 153 DAIIR 157 (272)
T ss_pred eEEEE
Confidence 88874
No 187
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=67.46 E-value=6.1 Score=45.44 Aligned_cols=58 Identities=31% Similarity=0.355 Sum_probs=40.8
Q ss_pred hhhhcccchhh--hhccccccC--CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHH
Q 006634 482 RHCFQTDTLGY--HLSVLKSMF--PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRR 542 (637)
Q Consensus 482 gnsfqvdtv~~--~lsvLK~~f--~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~ 542 (637)
+..||++|.+. +.++..++- +.+-.++|+|||.|-+.+++.+- ++-|..||+++.+..
T Consensus 358 ~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~ 419 (534)
T KOG2187|consen 358 GAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVE 419 (534)
T ss_pred chhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc---ccceeeeecChhhcc
Confidence 44567776543 234444432 44567999999999999998763 356889999999864
No 188
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=67.23 E-value=13 Score=39.89 Aligned_cols=36 Identities=31% Similarity=0.246 Sum_probs=30.7
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHH
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNR 541 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~ 541 (637)
+-+|||+=||.|.+...+...|.. .|+++|.++...
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l 158 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFL 158 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHH
Confidence 468999999999999999888864 588999998754
No 189
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=67.03 E-value=11 Score=39.01 Aligned_cols=40 Identities=25% Similarity=0.180 Sum_probs=33.4
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHH
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILK 545 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r 545 (637)
.+-+||..=||-|==.+-|.+.|++ |++||+++.|+..+.
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~~---V~GvDlS~~Ai~~~~ 82 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGVK---VIGIELSEKAVLSFF 82 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCCc---EEEEecCHHHHHHHH
Confidence 4578998888888777889999985 789999999987653
No 190
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=66.21 E-value=19 Score=36.34 Aligned_cols=82 Identities=12% Similarity=0.076 Sum_probs=52.4
Q ss_pred CCCCcccccCCCCChHHHHHHHcC-CceeeEEEeecCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccC
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLG-IKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLG 579 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aG-i~~k~vvaVEid~~a~~t~r~~~~~tn~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g 579 (637)
+.+.+|||+=||.|.+...+.+.. .+-..++++|+++......+........ ....++.+|+.++.. +
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------~ 121 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI----------K 121 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC----------C
Confidence 456789999999999988876642 2112478999999988777765543211 112345677765531 2
Q ss_pred CccEEEEcCCCCCc
Q 006634 580 SIDFVICQNSVPQI 593 (637)
Q Consensus 580 ~~DLVIGGpPCQ~F 593 (637)
.+|+|+.....+-+
T Consensus 122 ~~d~v~~~~~l~~~ 135 (239)
T TIGR00740 122 NASMVILNFTLQFL 135 (239)
T ss_pred CCCEEeeecchhhC
Confidence 46777766654443
No 191
>PRK11524 putative methyltransferase; Provisional
Probab=65.71 E-value=8.1 Score=40.56 Aligned_cols=41 Identities=22% Similarity=0.190 Sum_probs=34.6
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHH
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR 546 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~ 546 (637)
.+=.|||-|+|.|.-.++.+++|= ..+++|+++..+.+.+.
T Consensus 208 ~GD~VLDPF~GSGTT~~AA~~lgR---~~IG~Ei~~~Y~~~a~~ 248 (284)
T PRK11524 208 PGDIVLDPFAGSFTTGAVAKASGR---KFIGIEINSEYIKMGLR 248 (284)
T ss_pred CCCEEEECCCCCcHHHHHHHHcCC---CEEEEeCCHHHHHHHHH
Confidence 455699999999999999999994 46899999988776654
No 192
>PTZ00146 fibrillarin; Provisional
Probab=64.98 E-value=19 Score=38.86 Aligned_cols=79 Identities=19% Similarity=0.199 Sum_probs=46.2
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
..+.+||||-||.|+++.-+... |-. -.|+|||+++...+-+...-.. .+....+..|++.- ..+.. ..+.
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~-G~VyAVD~s~r~~~dLl~~ak~--r~NI~~I~~Da~~p--~~y~~---~~~~ 202 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPE-GVVYAVEFSHRSGRDLTNMAKK--RPNIVPIIEDARYP--QKYRM---LVPM 202 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCC-CEEEEEECcHHHHHHHHHHhhh--cCCCEEEECCccCh--hhhhc---ccCC
Confidence 45689999999999998877754 221 2589999997643222221111 12223456777642 11111 1246
Q ss_pred ccEEEEcC
Q 006634 581 IDFVICQN 588 (637)
Q Consensus 581 ~DLVIGGp 588 (637)
||+|+--.
T Consensus 203 vDvV~~Dv 210 (293)
T PTZ00146 203 VDVIFADV 210 (293)
T ss_pred CCEEEEeC
Confidence 89887665
No 193
>PRK14134 recX recombination regulator RecX; Provisional
Probab=64.60 E-value=82 Score=33.59 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=23.3
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCC
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKLGK 103 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~ 103 (637)
..+...+|+.=||+.+.|..||+++-.
T Consensus 182 k~Kl~~~L~rrGFs~~~I~~vl~~~~~ 208 (283)
T PRK14134 182 YKKLGPYLISRGYSSNIAEWILNELIK 208 (283)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHh
Confidence 456778999999999999999988854
No 194
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=64.48 E-value=14 Score=37.49 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=31.0
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHh---CCCCcHHHHHHHHH
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKL---GKDAPVYELVDFIT 115 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~---G~da~i~~Lld~I~ 115 (637)
.++.+..|+.+||++.++.+||.++ .++.++++++-..+
T Consensus 152 ~~ea~~AL~~LGy~~~ea~~al~~i~~~~~~~~~e~lir~aL 193 (197)
T PRK14603 152 AEDAVLALLALGFREAQVRSVVAELLAQNPEASAQTLIRKAL 193 (197)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 4678899999999999999999998 33445677766544
No 195
>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []. The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.
Probab=63.85 E-value=14 Score=39.07 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=18.2
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhh
Q 006634 151 EITLQLLEMGFSENQVSLAIEKF 173 (637)
Q Consensus 151 ~k~~~L~~MGfseeEas~Ai~r~ 173 (637)
.|+..|..+||+++|+..++.+|
T Consensus 245 ~~i~~L~~lG~s~~ei~~mv~~~ 267 (345)
T PF02536_consen 245 PKIEFLQSLGFSEEEIAKMVRRF 267 (345)
T ss_dssp HHHHHHHTTT--HHHHHHHHHHS
T ss_pred HHHHHHHHhcCcHHHHHHHHHhC
Confidence 56669999999999999988887
No 196
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=63.26 E-value=26 Score=37.91 Aligned_cols=37 Identities=24% Similarity=0.221 Sum_probs=31.0
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHH
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRR 542 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~ 542 (637)
+-+|||+=||.|.+...+...|.. .|+++|.++....
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~ 158 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLC 158 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHH
Confidence 468999999999999999888863 5789999996543
No 197
>PLN02366 spermidine synthase
Probab=63.10 E-value=18 Score=39.00 Aligned_cols=80 Identities=18% Similarity=0.228 Sum_probs=51.4
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcC----CCCCccccccccccChhhHHHhhhc
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG----QTGELVQIEDIQALTTKKFESLIHK 577 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn----~~g~l~~~~DI~~Lt~~~Ie~l~~~ 577 (637)
++.-+||.+=+|.||+...+.+.. .+..+..||||+...+..+.|+...+ .+...++.+|-.+. ++.. .
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~----l~~~--~ 162 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEF----LKNA--P 162 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHH----Hhhc--c
Confidence 456789999999999887777652 34567889999998888888875421 11222344554321 1110 1
Q ss_pred cCCccEEEEcC
Q 006634 578 LGSIDFVICQN 588 (637)
Q Consensus 578 ~g~~DLVIGGp 588 (637)
.+.+|+||.-.
T Consensus 163 ~~~yDvIi~D~ 173 (308)
T PLN02366 163 EGTYDAIIVDS 173 (308)
T ss_pred CCCCCEEEEcC
Confidence 24699999743
No 198
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=61.80 E-value=17 Score=33.17 Aligned_cols=44 Identities=23% Similarity=0.275 Sum_probs=37.3
Q ss_pred cccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhh
Q 006634 506 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 550 (637)
Q Consensus 506 ~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~ 550 (637)
++||+-||.|-.++.+.+.|-. ..++++|.++.+...++.++..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~-~~v~~~E~~~~~~~~l~~~~~~ 44 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAE-GRVIAFEPLPDAYEILEENVKL 44 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCC-CEEEEEecCHHHHHHHHHHHHH
Confidence 5899999999999999988854 2578999999999988887654
No 199
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=61.51 E-value=16 Score=37.40 Aligned_cols=71 Identities=24% Similarity=0.414 Sum_probs=49.9
Q ss_pred CCCCCcccccCCCCChHHH-HHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 006634 501 FPGGLTMLSVFSGIGGAEV-TLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 579 (637)
Q Consensus 501 f~~~l~vLsLFSGiGGlsl-GL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g 579 (637)
|..+.+||||=|=-||-+. +.+++|-..+ |++||+.+.. ..++...+.+||+.-+. +..+....+
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~-ivavDi~p~~-----------~~~~V~~iq~d~~~~~~--~~~l~~~l~ 108 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGK-IVAVDILPMK-----------PIPGVIFLQGDITDEDT--LEKLLEALG 108 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCc-EEEEECcccc-----------cCCCceEEeeeccCccH--HHHHHHHcC
Confidence 4568999999999999986 6667774433 7899999884 24566678899986543 333333333
Q ss_pred --CccEEE
Q 006634 580 --SIDFVI 585 (637)
Q Consensus 580 --~~DLVI 585 (637)
.+|+|+
T Consensus 109 ~~~~DvV~ 116 (205)
T COG0293 109 GAPVDVVL 116 (205)
T ss_pred CCCcceEE
Confidence 369988
No 200
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=60.44 E-value=24 Score=38.15 Aligned_cols=84 Identities=20% Similarity=0.190 Sum_probs=59.5
Q ss_pred cccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCc-cccccccccChhhHHHhhh
Q 006634 498 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTKKFESLIH 576 (637)
Q Consensus 498 K~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l-~~~~DI~~Lt~~~Ie~l~~ 576 (637)
|.-.+.+-.||+.=-|.|-++..|-.+|- .|+|||+|+.-..-++.-...+...+.+ ++.+|.-+.+
T Consensus 53 ka~~k~tD~VLEvGPGTGnLT~~lLe~~k---kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d--------- 120 (315)
T KOG0820|consen 53 KADLKPTDVVLEVGPGTGNLTVKLLEAGK---KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD--------- 120 (315)
T ss_pred ccCCCCCCEEEEeCCCCCHHHHHHHHhcC---eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC---------
Confidence 33334456799999999999999999994 5899999999888887766544322222 4567765544
Q ss_pred ccCCccEEEEcCCCCCcC
Q 006634 577 KLGSIDFVICQNSVPQIP 594 (637)
Q Consensus 577 ~~g~~DLVIGGpPCQ~FS 594 (637)
+.-||++|---|-|=-|
T Consensus 121 -~P~fd~cVsNlPyqISS 137 (315)
T KOG0820|consen 121 -LPRFDGCVSNLPYQISS 137 (315)
T ss_pred -CcccceeeccCCccccC
Confidence 23578888777776443
No 201
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=60.10 E-value=11 Score=38.57 Aligned_cols=39 Identities=23% Similarity=0.158 Sum_probs=31.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHH
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL 544 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~ 544 (637)
.+-+||..-||-|=--+-|...|++ |+++|+++.|++.+
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~G~~---VvGvDls~~Ai~~~ 75 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQGHD---VVGVDLSPTAIEQA 75 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHTTEE---EEEEES-HHHHHHH
T ss_pred CCCeEEEeCCCChHHHHHHHHCCCe---EEEEecCHHHHHHH
Confidence 3467999999998777888899975 68999999998776
No 202
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=60.07 E-value=39 Score=37.73 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=32.6
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHH
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKR 546 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~ 546 (637)
..+.+|||+=||.|++...|.+. |. .++++|+++.+....+.
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvDiS~~~l~~A~~ 307 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDV---HVVGIDLSVNMISFALE 307 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHH
Confidence 34678999999999988777653 54 37899999988766554
No 203
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=58.72 E-value=20 Score=38.60 Aligned_cols=79 Identities=13% Similarity=0.034 Sum_probs=49.2
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 583 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 583 (637)
+-++||.=||.||.+.++-+..=+--.|+++|+|+.+....+..... ...-.++++|..++.. .+.. ..+.+|.
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~-~l~~---~~~~vDg 93 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKE-VLAE---GLGKVDG 93 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHH-HHHc---CCCccCE
Confidence 45799999999999999887641112478999999998877654321 1112245566665531 1111 1236888
Q ss_pred EEEcC
Q 006634 584 VICQN 588 (637)
Q Consensus 584 VIGGp 588 (637)
|+-=.
T Consensus 94 Il~DL 98 (296)
T PRK00050 94 ILLDL 98 (296)
T ss_pred EEECC
Confidence 87543
No 204
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=57.93 E-value=18 Score=36.39 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=32.0
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCC--CCcHHHHHHHHHH
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKLGK--DAPVYELVDFITA 116 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~--da~i~~Lld~I~a 116 (637)
.++.+..|+.+||++.+|.+||.+.-. +.++++|+..-+.
T Consensus 147 ~~e~~~aL~~LGy~~~e~~~ai~~~~~~~~~~~~~li~~aLk 188 (191)
T TIGR00084 147 RDELFEALVSLGYKPQEIQQALKKIKNKPDFAIEQDIEEALK 188 (191)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 467889999999999999999999843 4566777765543
No 205
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=57.89 E-value=12 Score=41.49 Aligned_cols=41 Identities=17% Similarity=0.245 Sum_probs=34.3
Q ss_pred chhhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 006634 75 GLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA 117 (637)
Q Consensus 75 s~~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~ 117 (637)
++....+..++.|||++++|..||.-.=. ++ +-=||||++-
T Consensus 154 ~~~e~~I~~i~eMGf~R~qV~~ALRAafN-NP-dRAVEYL~tG 194 (378)
T TIGR00601 154 SERETTIEEIMEMGYEREEVERALRAAFN-NP-DRAVEYLLTG 194 (378)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHhC-CH-HHHHHHHHhC
Confidence 34567889999999999999999987654 45 7899999987
No 206
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=57.33 E-value=19 Score=36.27 Aligned_cols=39 Identities=13% Similarity=0.136 Sum_probs=31.5
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCC-CCcHHHHHHHHH
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKLGK-DAPVYELVDFIT 115 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~-da~i~~Lld~I~ 115 (637)
.++.+..|+.+||++.++.+||++.-. +.++++|+-.-+
T Consensus 143 ~~e~~~AL~~LGy~~~ea~~av~~~~~~~~~~e~lik~AL 182 (188)
T PRK14606 143 YHESLEALVSLGYPEKQAREAVKHVYREGMKTSELIKEAL 182 (188)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 467889999999999999999999954 556676665544
No 207
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=57.11 E-value=9.7 Score=39.19 Aligned_cols=78 Identities=15% Similarity=0.162 Sum_probs=53.7
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+.+||||-||.|=.+++--++|-. -|++.||++.+...++.|-. ..|.. |.-+..+ ++...+.+|
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~--~v~a~d~~P~~~~ai~lNa~---angv~-----i~~~~~d----~~g~~~~~D 144 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAA--EVVAADIDPWLEQAIRLNAA---ANGVS-----ILFTHAD----LIGSPPAFD 144 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhH--HHHhcCCChHHHHHhhcchh---hccce-----eEEeecc----ccCCCccee
Confidence 4789999999999999999999984 57899999999887765322 22321 1111111 122346788
Q ss_pred EEEEcCCCCCcC
Q 006634 583 FVICQNSVPQIP 594 (637)
Q Consensus 583 LVIGGpPCQ~FS 594 (637)
||+-|-=|=+-+
T Consensus 145 l~LagDlfy~~~ 156 (218)
T COG3897 145 LLLAGDLFYNHT 156 (218)
T ss_pred EEEeeceecCch
Confidence 888887766555
No 208
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=56.87 E-value=26 Score=37.16 Aligned_cols=87 Identities=10% Similarity=-0.045 Sum_probs=52.8
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCC--ccccccccccChhhHHHhhhcc-
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE--LVQIEDIQALTTKKFESLIHKL- 578 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~--l~~~~DI~~Lt~~~Ie~l~~~~- 578 (637)
+.+.+||||=||.|-.+..|-+++.....++++|+++......+...... .++. ..+.+|+.+.-. +....
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~-~p~~~v~~i~gD~~~~~~-----~~~~~~ 135 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD-YPQLEVHGICADFTQPLA-----LPPEPA 135 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh-CCCceEEEEEEcccchhh-----hhcccc
Confidence 34578999999999999988877431124789999998755444322211 1221 124677764211 11111
Q ss_pred -CCccEEEEcCCCCCcC
Q 006634 579 -GSIDFVICQNSVPQIP 594 (637)
Q Consensus 579 -g~~DLVIGGpPCQ~FS 594 (637)
+...+++-|+++..|.
T Consensus 136 ~~~~~~~~~gs~~~~~~ 152 (301)
T TIGR03438 136 AGRRLGFFPGSTIGNFT 152 (301)
T ss_pred cCCeEEEEecccccCCC
Confidence 2455677788877776
No 209
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=56.65 E-value=18 Score=37.04 Aligned_cols=80 Identities=19% Similarity=0.174 Sum_probs=52.6
Q ss_pred CcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhhccCCcc
Q 006634 505 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 505 l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g--~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
-+||||=||-|-+-..|++-||+-+ ++.||+++.|...-+ +-...++.. .-+.+.||.+= +. ..+++|
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~-L~GvDYs~~AV~LA~-niAe~~~~~n~I~f~q~DI~~~--~~------~~~qfd 138 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSK-LTGVDYSEKAVELAQ-NIAERDGFSNEIRFQQLDITDP--DF------LSGQFD 138 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCC-ccccccCHHHHHHHH-HHHHhcCCCcceeEEEeeccCC--cc------ccccee
Confidence 4899999999999999999999754 789999999987543 333332222 22456677542 11 236788
Q ss_pred EEEEcCCCCCcC
Q 006634 583 FVICQNSVPQIP 594 (637)
Q Consensus 583 LVIGGpPCQ~FS 594 (637)
||.-=----..|
T Consensus 139 lvlDKGT~DAis 150 (227)
T KOG1271|consen 139 LVLDKGTLDAIS 150 (227)
T ss_pred EEeecCceeeee
Confidence 876433333334
No 210
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=56.13 E-value=28 Score=34.35 Aligned_cols=43 Identities=14% Similarity=0.113 Sum_probs=31.6
Q ss_pred cccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhh
Q 006634 506 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 549 (637)
Q Consensus 506 ~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~ 549 (637)
+|||+=||.|++...+.+..-.. .+.++|+++......+....
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~-~v~gid~s~~~~~~a~~~~~ 44 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHL-QLHGYTISPEQAEVGRERIR 44 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHH
Confidence 58999999999887776543122 36789999988776666543
No 211
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=55.52 E-value=23 Score=35.98 Aligned_cols=40 Identities=15% Similarity=0.067 Sum_probs=31.5
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhC---CCCcHHHHHHHHHH
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKLG---KDAPVYELVDFITA 116 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~G---~da~i~~Lld~I~a 116 (637)
.++.+..|+.+||++.++.+|+.++- ++.++++|+-.-+.
T Consensus 155 ~~ea~~AL~~LGy~~~ea~~av~~~~~~~~~~~~e~lir~ALk 197 (203)
T PRK14602 155 FRDALAGLANLGYGEEEARPVLKEVLEEEPDLDVGGALRAALK 197 (203)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Confidence 46788999999999999999999993 34456777665554
No 212
>PRK04457 spermidine synthase; Provisional
Probab=55.36 E-value=16 Score=38.12 Aligned_cols=76 Identities=12% Similarity=0.014 Sum_probs=48.9
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+-+||+|=+|.|.+...+.+.- +-..+.+||+|+...++.+.|+..... +...++.+|..+. +.. ..+.+
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~----l~~---~~~~y 137 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY----IAV---HRHST 137 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH----HHh---CCCCC
Confidence 34579999888888887776542 222478999999999998888753321 2223455666543 111 12478
Q ss_pred cEEEE
Q 006634 582 DFVIC 586 (637)
Q Consensus 582 DLVIG 586 (637)
|+|+-
T Consensus 138 D~I~~ 142 (262)
T PRK04457 138 DVILV 142 (262)
T ss_pred CEEEE
Confidence 99984
No 213
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=54.74 E-value=25 Score=38.82 Aligned_cols=42 Identities=19% Similarity=0.408 Sum_probs=33.0
Q ss_pred CCCcccccCCCCChHHHHHHH-cCCceeeEEEeecCHHHHHHHHHH
Q 006634 503 GGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRW 547 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~-aGi~~k~vvaVEid~~a~~t~r~~ 547 (637)
.+.+|||+=||.|++..-+.+ .|. .|+++|+++......+..
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~ 209 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQER 209 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHH
Confidence 467899999999999887665 465 368999999987766543
No 214
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=54.26 E-value=42 Score=32.70 Aligned_cols=81 Identities=21% Similarity=0.307 Sum_probs=43.4
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCC-CCCccccccccccCh-hhHHHhhhccC
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTT-KKFESLIHKLG 579 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~-~g~l~~~~DI~~Lt~-~~Ie~l~~~~g 579 (637)
.+.+||+|=||+|=..+.+..+ |- ..|+.-|.++ +...++.+-..++. ....+ .+..++= +.+.......+
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~--~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v---~v~~L~Wg~~~~~~~~~~~ 118 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGA--ARVVLTDYNE-VLELLRRNIELNGSLLDGRV---SVRPLDWGDELDSDLLEPH 118 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T---SEEEEEE-S--HHHHHHHHHHTT-----------EEEE--TTS-HHHHHHS-S
T ss_pred CCceEEEECCccchhHHHHHhccCC--ceEEEeccch-hhHHHHHHHHhccccccccc---cCcEEEecCcccccccccc
Confidence 5689999999999777888777 43 4578899999 77777776543220 11111 2333321 11211111235
Q ss_pred CccEEEEcCC
Q 006634 580 SIDFVICQNS 589 (637)
Q Consensus 580 ~~DLVIGGpP 589 (637)
.||+|+|.==
T Consensus 119 ~~D~IlasDv 128 (173)
T PF10294_consen 119 SFDVILASDV 128 (173)
T ss_dssp SBSEEEEES-
T ss_pred cCCEEEEecc
Confidence 7999998753
No 215
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=54.26 E-value=29 Score=36.60 Aligned_cols=46 Identities=22% Similarity=0.255 Sum_probs=30.8
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhh
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWES 550 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~ 550 (637)
..|.+||||=||-||+..-+.+. |.+ |.++.+++.-..-.+..-..
T Consensus 61 ~~G~~vLDiGcGwG~~~~~~a~~~g~~---v~gitlS~~Q~~~a~~~~~~ 107 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIYAAERYGCH---VTGITLSEEQAEYARERIRE 107 (273)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--E---EEEEES-HHHHHHHHHHHHC
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCcE---EEEEECCHHHHHHHHHHHHh
Confidence 35789999999999999877766 874 67899998876666554433
No 216
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=53.56 E-value=27 Score=39.08 Aligned_cols=82 Identities=16% Similarity=0.086 Sum_probs=52.1
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+..+||+=||.|.+.+.+.+.. +-..++++|+++.........-...+-....++.+|+..+.. .+ ..+.+|
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~-~~-----~~~s~D 194 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLE-LL-----PSNSVE 194 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhh-hC-----CCCcee
Confidence 35689999999999998888764 324688999998876555443322221122244566654321 11 235789
Q ss_pred EEEEcCCCC
Q 006634 583 FVICQNSVP 591 (637)
Q Consensus 583 LVIGGpPCQ 591 (637)
.|.--+|+.
T Consensus 195 ~I~lnFPdP 203 (390)
T PRK14121 195 KIFVHFPVP 203 (390)
T ss_pred EEEEeCCCC
Confidence 998777754
No 217
>PRK14136 recX recombination regulator RecX; Provisional
Probab=53.45 E-value=32 Score=37.43 Aligned_cols=28 Identities=14% Similarity=0.056 Sum_probs=24.0
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCCC
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKLGKD 104 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~d 104 (637)
.-+.+.+|+.=||+.+.|..+|+.+.++
T Consensus 278 k~K~iRfL~rRGFS~D~I~~vLk~~~de 305 (309)
T PRK14136 278 RAKQARFLAARGFSSATIVKLLKVGDDE 305 (309)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhchhc
Confidence 4566789999999999999999987664
No 218
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.91 E-value=34 Score=39.06 Aligned_cols=85 Identities=18% Similarity=0.266 Sum_probs=55.6
Q ss_pred CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhhcCCCCCCCcccCcCCCCCCCCCCCccCCCCCCCCCCccccchhhHH
Q 006634 1 MGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMDEGLHIEK 80 (637)
Q Consensus 1 MGF~~e~V~KaI~e~Ge~~~d~iLE~Lltysal~~~~s~ss~s~~~~~~d~~~~~~s~~~~~~~~~~e~~~~~~s~~~~~ 80 (637)
|||..+++..|++.+- +|...-|+.|-+-+. .=+.|.+.++ + ---...
T Consensus 385 mGyer~la~eaL~r~~-Ndi~~aldllq~esd------------------el~~n~~~~p------~-------~vd~~~ 432 (568)
T KOG2561|consen 385 MGYERELAAEALRRNE-NDIQKALDLLQDESD------------------ELESNKPKRP------E-------QVDGIS 432 (568)
T ss_pred cchHhHHHHHHHHhcc-CcHHHHHHhcCCcch------------------hhhccCCCCC------c-------ccchhh
Confidence 9999999999999863 466666666543321 0111211110 0 011236
Q ss_pred HHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhh
Q 006634 81 RASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI 119 (637)
Q Consensus 81 ~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~ 119 (637)
+..|+.|||.+-.+-.|++--|.. ++..+.+|.++-.
T Consensus 433 la~Lv~mGF~e~~A~~ALe~~gnn--~~~a~~~L~~s~~ 469 (568)
T KOG2561|consen 433 LAELVSMGFEEGKARSALEAGGNN--EDTAQRLLSASVA 469 (568)
T ss_pred HHHHHHhccccchHHHHHHhcCCc--HHHHHHHHHHhCC
Confidence 788999999999999999887764 4778888776543
No 219
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=52.11 E-value=28 Score=35.10 Aligned_cols=39 Identities=26% Similarity=0.396 Sum_probs=31.6
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCC--CCcHHHHHHHHH
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKLGK--DAPVYELVDFIT 115 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~--da~i~~Lld~I~ 115 (637)
.++.+..|+..||++.+|.+|+++++. +.++++++-.-+
T Consensus 148 ~~e~~~aL~~LGy~~~~a~~ai~~~~~~~~~~~~~~ir~aL 188 (194)
T PRK14605 148 NSDILATLTALGYSSSEAAKAISSLGDNGDLPLEERIKLAL 188 (194)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Confidence 467889999999999999999999985 446676665544
No 220
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=52.10 E-value=38 Score=37.73 Aligned_cols=128 Identities=13% Similarity=0.066 Sum_probs=79.6
Q ss_pred hHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCce-e--eE
Q 006634 455 HIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKL-K--GV 531 (637)
Q Consensus 455 E~E~i~GfP~~~T~~~~~~~teR~k~Lgnsfqvdtv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~-k--~v 531 (637)
-++++-+|=..-|-++++.+.+-...| ++++= +. ..+-+|||+.|--||=++.|.++.++- . .|
T Consensus 120 ~l~rf~~fl~~e~~vg~i~rqeavSml------PvL~L------~v-~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~v 186 (375)
T KOG2198|consen 120 PLSRFHGFLKLETGVGNIYRQEAVSML------PVLAL------GV-KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYV 186 (375)
T ss_pred chhhcchHhhhhcccccchhhhhhhcc------chhhc------cc-CCCCeeeeeccCCCccHHHHHHHHhcCCCCCee
Confidence 466777777777888888777766322 22221 11 236789999999999999999888741 1 47
Q ss_pred EEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhh-hccCCccEEEEcCCCCCcCc
Q 006634 532 ISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI-HKLGSIDFVICQNSVPQIPN 595 (637)
Q Consensus 532 vaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~-~~~g~~DLVIGGpPCQ~FS~ 595 (637)
+|.|++..=.+.+.+--...+.+...+...|++......+...- ...-.||=|..--||.+=+.
T Consensus 187 vaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt 251 (375)
T KOG2198|consen 187 VANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGT 251 (375)
T ss_pred EecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhhhhhcceeEEecccCCCcc
Confidence 89999988766665422222233333344555544433221000 12236899999999998864
No 221
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=51.32 E-value=27 Score=35.09 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=30.4
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHH
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT 115 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~ 115 (637)
.++.++.|+.+||++.++.+|+++.. +.++++|+-.-+
T Consensus 142 ~~ea~~AL~~LGy~~~ea~~a~~~~~-~~~~eelir~aL 179 (183)
T PRK14601 142 KSEALAALLTLGFKQEKIIKVLASCQ-STGTSELIKEAL 179 (183)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcc-cCCHHHHHHHHH
Confidence 46788999999999999999999994 556677665433
No 222
>PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=48.09 E-value=19 Score=36.15 Aligned_cols=35 Identities=17% Similarity=0.355 Sum_probs=29.6
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhh
Q 006634 151 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADK 185 (637)
Q Consensus 151 ~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~ 185 (637)
|-...|+.+||+..||..|+.+..++.++++++-.
T Consensus 147 e~~~aL~~LGy~~~ea~~al~~v~~~~~~eelir~ 181 (186)
T PRK14600 147 DALAALISLGYEKTKAFNAIQKIKPNLSTQDIIRK 181 (186)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhhcCCCHHHHHHH
Confidence 44569999999999999999999888888887654
No 223
>PLN03075 nicotianamine synthase; Provisional
Probab=47.32 E-value=1.2e+02 Score=32.97 Aligned_cols=77 Identities=13% Similarity=0.074 Sum_probs=47.3
Q ss_pred CCCcccccCCCCChHHHHHHHcC-CceeeEEEeecCHHHHHHHHHHhhh-cCCC-CCccccccccccChhhHHHhhhccC
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLG-IKLKGVISIETSETNRRILKRWWES-SGQT-GELVQIEDIQALTTKKFESLIHKLG 579 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aG-i~~k~vvaVEid~~a~~t~r~~~~~-tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g 579 (637)
.+-+|+++=||.||++.-+-.++ ++--.+..+|+|+.+...-+++... .... ...+..+|+.++.. ..+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~--------~l~ 194 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE--------SLK 194 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc--------ccC
Confidence 34679999899888865544332 2222477999999998877776643 1111 12245566655422 135
Q ss_pred CccEEEEc
Q 006634 580 SIDFVICQ 587 (637)
Q Consensus 580 ~~DLVIGG 587 (637)
+||+|+-=
T Consensus 195 ~FDlVF~~ 202 (296)
T PLN03075 195 EYDVVFLA 202 (296)
T ss_pred CcCEEEEe
Confidence 79998743
No 224
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=45.56 E-value=42 Score=36.80 Aligned_cols=72 Identities=15% Similarity=0.067 Sum_probs=44.4
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+.+||||=||.|.+...+.+. +- ..++++|+++...+..+...... ...++.+|+.++.- ..+.|
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~---~i~~i~gD~e~lp~--------~~~sF 179 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLK---ECKIIEGDAEDLPF--------PTDYA 179 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhcc---CCeEEeccHHhCCC--------CCCce
Confidence 4579999999999988877553 21 34788999998766665533211 11234556554321 11357
Q ss_pred cEEEEc
Q 006634 582 DFVICQ 587 (637)
Q Consensus 582 DLVIGG 587 (637)
|+|+..
T Consensus 180 DvVIs~ 185 (340)
T PLN02490 180 DRYVSA 185 (340)
T ss_pred eEEEEc
Confidence 777653
No 225
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=45.05 E-value=47 Score=37.12 Aligned_cols=43 Identities=19% Similarity=0.270 Sum_probs=34.5
Q ss_pred CCcccccCCCCC--hHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhh
Q 006634 504 GLTMLSVFSGIG--GAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 549 (637)
Q Consensus 504 ~l~vLsLFSGiG--GlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~ 549 (637)
..+|+|-|||.| |..++.+- |. ..++..||++.|..+.+.|-.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~-~~--~~v~lNDisp~Avelik~Nv~ 97 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVET-GV--VKVVLNDISPKAVELIKENVR 97 (380)
T ss_pred CeEEeecccccchhHhhhhhhc-Cc--cEEEEccCCHHHHHHHHHHHH
Confidence 588999999888 88777664 33 257899999999999988754
No 226
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=44.94 E-value=57 Score=35.11 Aligned_cols=64 Identities=20% Similarity=0.378 Sum_probs=41.4
Q ss_pred CCCCcccccCCCCChHHH-HHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccCh
Q 006634 502 PGGLTMLSVFSGIGGAEV-TLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTT 568 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlsl-GL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~ 568 (637)
..|++|||+=||-||+.+ +.++-|. .|+++.+++.-.+-.+.-....+-. ...+...|.++++.
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y~v---~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e 136 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEYGV---TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEE 136 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHcCC---EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccc
Confidence 468999999999999875 4444475 3689999998777665533322211 12244566665554
No 227
>PF07223 DUF1421: Protein of unknown function (DUF1421); InterPro: IPR010820 This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function.
Probab=44.63 E-value=19 Score=39.92 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=23.2
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCC
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKLGK 103 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~ 103 (637)
-+++|+.++.|||+.|-|.-.|.|+=|
T Consensus 321 ~ddvidKv~~MGf~rDqV~a~v~rl~E 347 (358)
T PF07223_consen 321 YDDVIDKVASMGFRRDQVRATVRRLTE 347 (358)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 578999999999999999888777644
No 228
>PLN03196 MOC1-like protein; Provisional
Probab=44.30 E-value=45 Score=38.22 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=18.7
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhhC
Q 006634 151 EITLQLLEMGFSENQVSLAIEKFG 174 (637)
Q Consensus 151 ~k~~~L~~MGfseeEas~Ai~r~G 174 (637)
.|+.+|.+|||+++|+..+|.+|=
T Consensus 342 ~kvefL~~~Gls~edI~~mv~k~P 365 (487)
T PLN03196 342 KHVEFLRGRGFSAQDVAKMVVRCP 365 (487)
T ss_pred HHHHHHHHcCCCHHHHHHHHHhCC
Confidence 455588899999999988887763
No 229
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=42.52 E-value=36 Score=32.35 Aligned_cols=32 Identities=25% Similarity=0.195 Sum_probs=24.4
Q ss_pred chhhHHHHHHHhcCCCHHHHHHHHHHhCCCCc
Q 006634 75 GLHIEKRASLLMMNFSVNEVDFALDKLGKDAP 106 (637)
Q Consensus 75 s~~~~~~~~lv~MGF~~eeV~~AI~~~G~da~ 106 (637)
+.-++|+.+|..-|.+++||..|+++.|....
T Consensus 21 sp~~~k~~FL~sKGLt~~EI~~al~~a~~~~~ 52 (136)
T PF04695_consen 21 SPLEKKIAFLESKGLTEEEIDEALGRAGSPPA 52 (136)
T ss_dssp S-HHHHHHHHHHCT--HHHHHHHHHHHT--S-
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHhcCCccc
Confidence 55789999999999999999999999999874
No 230
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=42.39 E-value=2.7e+02 Score=25.37 Aligned_cols=71 Identities=17% Similarity=0.127 Sum_probs=39.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCcccccchhhhHH-HHH
Q 006634 79 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITL-QLL 157 (637)
Q Consensus 79 ~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~~~~~~~e~~d~~~d~d~~~~e~~~e~~~~~~~k~~-~L~ 157 (637)
.....|..-|.+.+.|..|++ +....+. +.-+..-....... ..+ .....|+. +|+
T Consensus 47 ~I~~~L~~kGi~~~~i~~~l~---~~~~~e~-a~~~~~kk~~~~~~----------------~~~---~~~~~K~~~~L~ 103 (121)
T PF02631_consen 47 RIRQKLKQKGIDREIIEEALE---EYDEEEE-ALELAEKKYRRYRK----------------PSD---RKRKQKLIRFLM 103 (121)
T ss_dssp HHHHHHHHTT--HHHHHHHHT---CS-HHHH-HHHHHHHHHHHTTT----------------S-C---HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCChHHHHHHHH---HhhHHHH-HHHHHHHHHhcccC----------------CCC---HHHHHHHHHHHH
Confidence 455788899999999999998 3333233 22222222211100 000 12335665 999
Q ss_pred hcCCCHHHHHHHHHh
Q 006634 158 EMGFSENQVSLAIEK 172 (637)
Q Consensus 158 ~MGfseeEas~Ai~r 172 (637)
.-||+.+.+..||.+
T Consensus 104 rrGF~~~~i~~vi~~ 118 (121)
T PF02631_consen 104 RRGFSYDVIRRVISE 118 (121)
T ss_dssp HTT--HHHHHHHCHH
T ss_pred HCCCCHHHHHHHHhh
Confidence 999999999999887
No 231
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=42.35 E-value=45 Score=37.01 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=33.2
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHH
Q 006634 501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRR 542 (637)
Q Consensus 501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~ 542 (637)
+..+.++|||=|+.||++.-|.+.|. -|+|||..+.+-.
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g~l~~~ 247 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM---FVTAVDNGPMAQS 247 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC---EEEEEechhcCHh
Confidence 35688999999999999999999997 3789998877644
No 232
>PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=39.67 E-value=53 Score=33.29 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=30.2
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCC--CCcHHHHHHHHH
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKLGK--DAPVYELVDFIT 115 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~--da~i~~Lld~I~ 115 (637)
.++.+..|+.+||++.++.+||.++-. +.++++++-.-+
T Consensus 149 ~~e~~~aL~~LGy~~~ea~~ai~~i~~~~~~~~~~~ir~aL 189 (195)
T PRK14604 149 DRELSEILISLGYSAAEAAAAIAALPSDAPPDLEERLRLAL 189 (195)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 467889999999999999999999833 345566665444
No 233
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=37.88 E-value=37 Score=34.45 Aligned_cols=34 Identities=26% Similarity=0.477 Sum_probs=26.1
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhh---CCCCChhhhhh
Q 006634 151 EITLQLLEMGFSENQVSLAIEKF---GSKTPISELAD 184 (637)
Q Consensus 151 ~k~~~L~~MGfseeEas~Ai~r~---G~da~i~eLvD 184 (637)
|-...|+++||+..||..||.++ .++.++++++-
T Consensus 154 ea~~AL~~LGy~~~ea~~al~~i~~~~~~~~~e~lir 190 (197)
T PRK14603 154 DAVLALLALGFREAQVRSVVAELLAQNPEASAQTLIR 190 (197)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 44459999999999999999998 33456666543
No 234
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=37.00 E-value=52 Score=33.81 Aligned_cols=69 Identities=14% Similarity=0.112 Sum_probs=41.4
Q ss_pred CcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 006634 505 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV 584 (637)
Q Consensus 505 l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLV 584 (637)
-++|++=||+|-++..|.... .-+.++|+++.|...-+.--. ..+..-++..||....+ .+.||||
T Consensus 45 ~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~--~~~~V~~~~~dvp~~~P---------~~~FDLI 110 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLA--GLPHVEWIQADVPEFWP---------EGRFDLI 110 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTT--T-SSEEEEES-TTT------------SS-EEEE
T ss_pred ceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcC--CCCCeEEEECcCCCCCC---------CCCeeEE
Confidence 358999999999999987654 568999999999887765332 12222345566654322 2578888
Q ss_pred EEc
Q 006634 585 ICQ 587 (637)
Q Consensus 585 IGG 587 (637)
+-.
T Consensus 111 V~S 113 (201)
T PF05401_consen 111 VLS 113 (201)
T ss_dssp EEE
T ss_pred EEe
Confidence 743
No 235
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=36.86 E-value=20 Score=37.97 Aligned_cols=99 Identities=19% Similarity=0.307 Sum_probs=59.4
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHH--HHHHhhhcCCCC-CccccccccccChhhHHHhhhcc-
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRI--LKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL- 578 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t--~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~- 578 (637)
.+-+|||-+.|-|=..+..-+.|.. -|..||.|+..... +.-|-+.- +.. -.++.+|+-+ ++..+
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~--~VitvEkdp~VLeLa~lNPwSr~l-~~~~i~iilGD~~e--------~V~~~~ 202 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAI--HVITVEKDPNVLELAKLNPWSREL-FEIAIKIILGDAYE--------VVKDFD 202 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCc--EEEEEeeCCCeEEeeccCCCCccc-cccccEEecccHHH--------HHhcCC
Confidence 5788999999999888877778862 36789999874321 11111100 111 1134455432 23333
Q ss_pred -CCccEEEEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHH
Q 006634 579 -GSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQR 631 (637)
Q Consensus 579 -g~~DLVIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~ 631 (637)
..||.||.-|| -||.++. +.- -.+|.|++|||+.
T Consensus 203 D~sfDaIiHDPP--RfS~Age---------------LYs--eefY~El~RiLkr 237 (287)
T COG2521 203 DESFDAIIHDPP--RFSLAGE---------------LYS--EEFYRELYRILKR 237 (287)
T ss_pred ccccceEeeCCC--ccchhhh---------------HhH--HHHHHHHHHHcCc
Confidence 35999999999 5664311 211 2377888888763
No 236
>PRK01581 speE spermidine synthase; Validated
Probab=36.68 E-value=81 Score=35.25 Aligned_cols=80 Identities=13% Similarity=0.020 Sum_probs=48.0
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHh-----hhc--CCCCCccccccccccChhhHHHh
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW-----ESS--GQTGELVQIEDIQALTTKKFESL 574 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~-----~~t--n~~g~l~~~~DI~~Lt~~~Ie~l 574 (637)
++.-+||.|=+|.|++...+.+.. .+..++.||||+...++.+.+. .+. ..+...++.+|..+. +.
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~f----L~-- 221 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEF----LS-- 221 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHH----HH--
Confidence 455689999888777655555533 2456889999999888777531 111 011222345555432 11
Q ss_pred hhccCCccEEEEcCC
Q 006634 575 IHKLGSIDFVICQNS 589 (637)
Q Consensus 575 ~~~~g~~DLVIGGpP 589 (637)
...+.+|+||.-.|
T Consensus 222 -~~~~~YDVIIvDl~ 235 (374)
T PRK01581 222 -SPSSLYDVIIIDFP 235 (374)
T ss_pred -hcCCCccEEEEcCC
Confidence 12357999998754
No 237
>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed
Probab=35.67 E-value=62 Score=32.45 Aligned_cols=39 Identities=26% Similarity=0.271 Sum_probs=31.6
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCCC-CcHHHHHHHHH
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKLGKD-APVYELVDFIT 115 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~d-a~i~~Lld~I~ 115 (637)
..+....|...||++.++.+|+++.+.+ ..+++++...+
T Consensus 149 ~~ev~~aL~~LG~~~~~a~~~~~~~~~~~~~~~~~i~~aL 188 (192)
T PRK00116 149 LEEAVSALVALGYKPKEASKAVAKILKEAASVEELIREAL 188 (192)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 4678899999999999999999999974 35566665443
No 238
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=35.11 E-value=43 Score=34.08 Aligned_cols=35 Identities=9% Similarity=0.195 Sum_probs=26.9
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhhC---CCCChhhhhhh
Q 006634 151 EITLQLLEMGFSENQVSLAIEKFG---SKTPISELADK 185 (637)
Q Consensus 151 ~k~~~L~~MGfseeEas~Ai~r~G---~da~i~eLvD~ 185 (637)
|-...|+.+||+..||..|+.++- ++.++++|+-.
T Consensus 157 ea~~AL~~LGy~~~ea~~av~~~~~~~~~~~~e~lir~ 194 (203)
T PRK14602 157 DALAGLANLGYGEEEARPVLKEVLEEEPDLDVGGALRA 194 (203)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Confidence 445689999999999999999983 35566665543
No 239
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=34.87 E-value=39 Score=34.03 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=27.2
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhhCC-CCChhhhhh
Q 006634 151 EITLQLLEMGFSENQVSLAIEKFGS-KTPISELAD 184 (637)
Q Consensus 151 ~k~~~L~~MGfseeEas~Ai~r~G~-da~i~eLvD 184 (637)
|-...|+++||+..||..||.+.-. +.++++|+-
T Consensus 145 e~~~AL~~LGy~~~ea~~av~~~~~~~~~~e~lik 179 (188)
T PRK14606 145 ESLEALVSLGYPEKQAREAVKHVYREGMKTSELIK 179 (188)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhCCCCHHHHHH
Confidence 4456999999999999999999964 666766653
No 240
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=34.50 E-value=32 Score=39.18 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=39.1
Q ss_pred ccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHh
Q 006634 499 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 548 (637)
Q Consensus 499 ~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~ 548 (637)
.+|.-|-.|-|+|||+|=+++-+-.-| ..|+|.|.++...+.|+.+-
T Consensus 245 g~fk~gevv~D~FaGvGPfa~Pa~kK~---crV~aNDLNpesik~Lk~ni 291 (495)
T KOG2078|consen 245 GLFKPGEVVCDVFAGVGPFALPAAKKG---CRVYANDLNPESIKWLKANI 291 (495)
T ss_pred hccCCcchhhhhhcCcCccccchhhcC---cEEEecCCCHHHHHHHHHhc
Confidence 367778889999999999988777766 36899999999999888653
No 241
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.28 E-value=38 Score=34.51 Aligned_cols=29 Identities=28% Similarity=0.201 Sum_probs=24.3
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCCCC
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKLGKDA 105 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da 105 (637)
..+++..|..|||+++++..|+...+-+-
T Consensus 162 ~~~~v~~l~~mGf~~~~~i~~L~~~~w~~ 190 (200)
T KOG0418|consen 162 DKKKVDSLIEMGFSELEAILVLSGSDWNL 190 (200)
T ss_pred hHHHHHHHHHhcccHHHHHHHhhccccch
Confidence 45788999999999999999988776653
No 242
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=33.79 E-value=1.3e+02 Score=33.26 Aligned_cols=128 Identities=13% Similarity=0.195 Sum_probs=63.3
Q ss_pred hhhHHHHhcCCCCCcccCCCChH-HHHHhhhhhhcccc--------h-------hhhhccccccCCCCCcccccCCCC--
Q 006634 453 PEHIELILGYPSNHTQAAGNSLT-ARLESLRHCFQTDT--------L-------GYHLSVLKSMFPGGLTMLSVFSGI-- 514 (637)
Q Consensus 453 ~~E~E~i~GfP~~~T~~~~~~~t-eR~k~Lgnsfqvdt--------v-------~~~lsvLK~~f~~~l~vLsLFSGi-- 514 (637)
...||+-||-|.-+....|+..+ +.++.|+..+..+. + ..-+...+.++ .+.+|. ++.+.
T Consensus 221 a~~L~~~fGip~~~~~p~G~~~t~~~l~~ia~~~g~~~~~~~~~~~i~~e~~~~~~~l~~~~~~l-~gkrv~-i~~~~~~ 298 (410)
T cd01968 221 ARKMEEKYGIPYIEVSFYGIRDTSKSLRNIAELLGDEELIERTEELIAREEARLRPELAPYRARL-EGKKAA-LYTGGVK 298 (410)
T ss_pred HHHHHHHhCCCeEecCcCcHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCEEE-EEcCCch
Confidence 67788888888766554566555 44555655554331 1 11122222223 244443 34432
Q ss_pred -ChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEEEcCCCC
Q 006634 515 -GGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP 591 (637)
Q Consensus 515 -GGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ 591 (637)
-|+...|+.+|+.+..+.+-...+...+-++.. .+...++. .+.+..++...+.. ..+||++|++=..
T Consensus 299 ~~~la~~l~elGm~v~~~~~~~~~~~~~~~~~~~-----~~~~~~v~---~~~~~~e~~~~i~~-~~pDl~ig~s~~~ 367 (410)
T cd01968 299 SWSLVSALQDLGMEVVATGTQKGTKEDYERIKEL-----LGEGTVIV---DDANPRELKKLLKE-KKADLLVAGGKER 367 (410)
T ss_pred HHHHHHHHHHCCCEEEEEecccCCHHHHHHHHHH-----hCCCcEEE---eCCCHHHHHHHHhh-cCCCEEEECCcch
Confidence 356667889999764443334443322222221 11111222 23444455544433 3699999985443
No 243
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=33.13 E-value=66 Score=33.02 Aligned_cols=46 Identities=22% Similarity=0.301 Sum_probs=37.8
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhh
Q 006634 501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 549 (637)
Q Consensus 501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~ 549 (637)
-..+-.|+|-|+|.|-..++..++|-. .+.+|+++....+...-+.
T Consensus 220 s~~~diVlDpf~GsGtt~~aa~~~~r~---~ig~e~~~~y~~~~~~r~~ 265 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIAAKNLGRR---FIGIEINPEYVEVALKRLQ 265 (302)
T ss_pred CCCCCEEeecCCCCChHHHHHHHcCCc---eEEEecCHHHHHHHHHHHH
Confidence 345678999999999999999999964 4679999998887665554
No 244
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=33.09 E-value=1.1e+02 Score=28.00 Aligned_cols=26 Identities=12% Similarity=0.068 Sum_probs=21.0
Q ss_pred chhhHHHHHHHhcCCCHHHHHHHHHH
Q 006634 75 GLHIEKRASLLMMNFSVNEVDFALDK 100 (637)
Q Consensus 75 s~~~~~~~~lv~MGF~~eeV~~AI~~ 100 (637)
....+.+.+|+.-||+.++|..||++
T Consensus 93 ~~~~K~~~~L~rrGF~~~~i~~vi~~ 118 (121)
T PF02631_consen 93 KRKQKLIRFLMRRGFSYDVIRRVISE 118 (121)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHCHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHhh
Confidence 34667888999999999999999998
No 245
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.77 E-value=72 Score=33.58 Aligned_cols=73 Identities=25% Similarity=0.317 Sum_probs=44.1
Q ss_pred CcccccCCCCChHHHHHH--HcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhc--cCC
Q 006634 505 LTMLSVFSGIGGAEVTLH--RLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK--LGS 580 (637)
Q Consensus 505 l~vLsLFSGiGGlslGL~--~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~--~g~ 580 (637)
.-.|-.|+|-+-+..|+. .-| .|+++|||+.+-++....+... |+.-.+.=|..-.-+.|.+++.+ .+.
T Consensus 77 ~lelGvfTGySaL~~Alalp~dG----rv~a~eid~~~~~~~~~~~k~a---gv~~KI~~i~g~a~esLd~l~~~~~~~t 149 (237)
T KOG1663|consen 77 TLELGVFTGYSALAVALALPEDG----RVVAIEIDADAYEIGLELVKLA---GVDHKITFIEGPALESLDELLADGESGT 149 (237)
T ss_pred EEEEecccCHHHHHHHHhcCCCc----eEEEEecChHHHHHhHHHHHhc---cccceeeeeecchhhhHHHHHhcCCCCc
Confidence 334556999999888876 344 3789999999998887777644 22211122233333445555433 355
Q ss_pred ccEE
Q 006634 581 IDFV 584 (637)
Q Consensus 581 ~DLV 584 (637)
||++
T Consensus 150 fDfa 153 (237)
T KOG1663|consen 150 FDFA 153 (237)
T ss_pred eeEE
Confidence 5554
No 246
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=32.66 E-value=63 Score=34.27 Aligned_cols=73 Identities=21% Similarity=0.256 Sum_probs=41.8
Q ss_pred CCCCC-hHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh----ccCCccEEE
Q 006634 511 FSGIG-GAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH----KLGSIDFVI 585 (637)
Q Consensus 511 FSGiG-GlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~----~~g~~DLVI 585 (637)
++||| -++.+|-..|+..-++...+-++.|..-|++ .......+++.-|+++ ..+++..+. .+|.+|++|
T Consensus 14 agGIGl~~sk~Ll~kgik~~~i~~~~En~~a~akL~a---i~p~~~v~F~~~DVt~--~~~~~~~f~ki~~~fg~iDIlI 88 (261)
T KOG4169|consen 14 AGGIGLATSKALLEKGIKVLVIDDSEENPEAIAKLQA---INPSVSVIFIKCDVTN--RGDLEAAFDKILATFGTIDILI 88 (261)
T ss_pred CchhhHHHHHHHHHcCchheeehhhhhCHHHHHHHhc---cCCCceEEEEEecccc--HHHHHHHHHHHHHHhCceEEEE
Confidence 34444 2356777889864333222333444444443 3333345567789887 455655443 469999999
Q ss_pred EcC
Q 006634 586 CQN 588 (637)
Q Consensus 586 GGp 588 (637)
-|.
T Consensus 89 NgA 91 (261)
T KOG4169|consen 89 NGA 91 (261)
T ss_pred ccc
Confidence 765
No 247
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=32.49 E-value=86 Score=35.03 Aligned_cols=51 Identities=27% Similarity=0.305 Sum_probs=36.5
Q ss_pred chhhhhccccc--cCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHH
Q 006634 489 TLGYHLSVLKS--MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRR 542 (637)
Q Consensus 489 tv~~~lsvLK~--~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~ 542 (637)
|-.|+-.+|.+ -|.. -.|+|.=||.|=++.=..+||. +-|+|||-++.|..
T Consensus 162 TgTY~~Ail~N~sDF~~-kiVlDVGaGSGILS~FAaqAGA--~~vYAvEAS~MAqy 214 (517)
T KOG1500|consen 162 TGTYQRAILENHSDFQD-KIVLDVGAGSGILSFFAAQAGA--KKVYAVEASEMAQY 214 (517)
T ss_pred hhHHHHHHHhcccccCC-cEEEEecCCccHHHHHHHHhCc--ceEEEEehhHHHHH
Confidence 33444444544 2443 4489999999999998899998 46899998887643
No 248
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=32.32 E-value=48 Score=33.47 Aligned_cols=35 Identities=26% Similarity=0.478 Sum_probs=28.0
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhhCC--CCChhhhhhh
Q 006634 151 EITLQLLEMGFSENQVSLAIEKFGS--KTPISELADK 185 (637)
Q Consensus 151 ~k~~~L~~MGfseeEas~Ai~r~G~--da~i~eLvD~ 185 (637)
+-...|...||+..||..|+..++. +.++++++-.
T Consensus 150 e~~~aL~~LGy~~~~a~~ai~~~~~~~~~~~~~~ir~ 186 (194)
T PRK14605 150 DILATLTALGYSSSEAAKAISSLGDNGDLPLEERIKL 186 (194)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhhccCCCCHHHHHHH
Confidence 3445999999999999999999985 5577776543
No 249
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=31.79 E-value=58 Score=34.86 Aligned_cols=91 Identities=13% Similarity=0.177 Sum_probs=55.8
Q ss_pred hcccchhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCC----CCCcccc
Q 006634 485 FQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ----TGELVQI 560 (637)
Q Consensus 485 fqvdtv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~----~g~l~~~ 560 (637)
|.-..+..|.-.+.-- +.-+||=+=-|.||+.--+.+..- ++-++.||||+.-...-+.|+....+ +-..+++
T Consensus 60 ~~yhEml~h~~~~ah~--~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i 136 (282)
T COG0421 60 FIYHEMLAHVPLLAHP--NPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIII 136 (282)
T ss_pred HHHHHHHHhchhhhCC--CCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEe
Confidence 3444455555544332 223777777788888777776663 57789999999999999888765421 1112344
Q ss_pred ccccccChhhHHHhhhcc-CCccEEEE
Q 006634 561 EDIQALTTKKFESLIHKL-GSIDFVIC 586 (637)
Q Consensus 561 ~DI~~Lt~~~Ie~l~~~~-g~~DLVIG 586 (637)
+|..+ ++.+. ..+|+||-
T Consensus 137 ~Dg~~--------~v~~~~~~fDvIi~ 155 (282)
T COG0421 137 DDGVE--------FLRDCEEKFDVIIV 155 (282)
T ss_pred ccHHH--------HHHhCCCcCCEEEE
Confidence 44432 33323 36999874
No 250
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=31.02 E-value=1e+02 Score=31.33 Aligned_cols=56 Identities=25% Similarity=0.300 Sum_probs=42.3
Q ss_pred hccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcC
Q 006634 494 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG 552 (637)
Q Consensus 494 lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn 552 (637)
|+.|... .+-.++|+=||+|+.++-+-.+|=. --++|+|-++.+.++.++|....+
T Consensus 27 ls~L~~~--~g~~l~DIGaGtGsi~iE~a~~~p~-~~v~AIe~~~~a~~~~~~N~~~fg 82 (187)
T COG2242 27 LSKLRPR--PGDRLWDIGAGTGSITIEWALAGPS-GRVIAIERDEEALELIERNAARFG 82 (187)
T ss_pred HHhhCCC--CCCEEEEeCCCccHHHHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhC
Confidence 5566542 3457999988888887777666744 457899999999999998876553
No 251
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=30.84 E-value=1.1e+02 Score=32.85 Aligned_cols=76 Identities=25% Similarity=0.082 Sum_probs=49.6
Q ss_pred hhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEE
Q 006634 453 PEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVI 532 (637)
Q Consensus 453 ~~E~E~i~GfP~~~T~~~~~~~teR~k~Lgnsfqvdtv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vv 532 (637)
.|.+--++|...=| =+|..+=+++|...-...+ +. -...++|||=||.|+.+.-+..+ ++-|+
T Consensus 58 ~T~iNG~LgRG~MF----vfS~~Q~~~LL~~~~~~~~---------~~-~~~~~lLDlGAGdG~VT~~l~~~---f~~v~ 120 (265)
T PF05219_consen 58 KTDINGILGRGSMF----VFSEEQFRKLLRISGFSWN---------PD-WKDKSLLDLGAGDGEVTERLAPL---FKEVY 120 (265)
T ss_pred HHhHhhhhcCCcEE----EecHHHHHHHhhhhccCCC---------Cc-ccCCceEEecCCCcHHHHHHHhh---cceEE
Confidence 55666666544322 3466666666664421110 10 13468999999999999888653 56799
Q ss_pred EeecCHHHHHHHH
Q 006634 533 SIETSETNRRILK 545 (637)
Q Consensus 533 aVEid~~a~~t~r 545 (637)
+-|+++.-+..|+
T Consensus 121 aTE~S~~Mr~rL~ 133 (265)
T PF05219_consen 121 ATEASPPMRWRLS 133 (265)
T ss_pred eecCCHHHHHHHH
Confidence 9999999988775
No 252
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=30.63 E-value=51 Score=33.16 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=25.8
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhh
Q 006634 151 EITLQLLEMGFSENQVSLAIEKFGSKTPISELA 183 (637)
Q Consensus 151 ~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLv 183 (637)
+-...|+.+||+..||..|+.+. .+.++++++
T Consensus 144 ea~~AL~~LGy~~~ea~~a~~~~-~~~~~eeli 175 (183)
T PRK14601 144 EALAALLTLGFKQEKIIKVLASC-QSTGTSELI 175 (183)
T ss_pred HHHHHHHHcCCCHHHHHHHHHhc-ccCCHHHHH
Confidence 44569999999999999999998 355666654
No 253
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=30.54 E-value=2.2e+02 Score=32.16 Aligned_cols=131 Identities=14% Similarity=0.191 Sum_probs=65.9
Q ss_pred hhhHHHHhcCCCCCcccCCCChH-HHHHhhhhhhcccc--------h----hhhhccc---cccCCCCCcccccCCCCC-
Q 006634 453 PEHIELILGYPSNHTQAAGNSLT-ARLESLRHCFQTDT--------L----GYHLSVL---KSMFPGGLTMLSVFSGIG- 515 (637)
Q Consensus 453 ~~E~E~i~GfP~~~T~~~~~~~t-eR~k~Lgnsfqvdt--------v----~~~lsvL---K~~f~~~l~vLsLFSGiG- 515 (637)
...||+-||-|.-.....|+..| +.++.|+..+..+. + +.....| +..+ .+.+|. +|.|..
T Consensus 260 a~~L~e~~GiP~~~~~~~G~~~T~~~L~~Ia~~lg~~~~~~~~~~~i~~e~~~~~~~l~~~~~~L-~Gkrv~-i~~g~~~ 337 (456)
T TIGR01283 260 ARKMEEKYGIPYFEGSFYGIEDTSKALRDIADLFGDEELLKRTEELIAREEAKIRPALEPYRERL-KGKKAA-IYTGGVK 337 (456)
T ss_pred HHHHHHHcCCCEEecCCCcHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCEEE-EEcCCch
Confidence 67788888888765554566666 45666666665321 0 1111222 2222 244552 444421
Q ss_pred --hHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEEEcCCCCCc
Q 006634 516 --GAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQI 593 (637)
Q Consensus 516 --GlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~F 593 (637)
++...|+.+|+.+..+..-...+....-++.. .....++.. +-+..++.+.+.+. .+||++||+....+
T Consensus 338 ~~~l~~~l~elGmevv~~~t~~~~~~d~~~l~~~-----~~~~~~v~~---~~d~~e~~~~i~~~-~pDl~ig~~~~~~~ 408 (456)
T TIGR01283 338 SWSLVSALQDLGMEVVATGTQKGTEEDYARIREL-----MGEGTVMLD---DANPRELLKLLLEY-KADLLIAGGKERYT 408 (456)
T ss_pred HHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHH-----cCCCeEEEe---CCCHHHHHHHHhhc-CCCEEEEccchHHH
Confidence 34445688999764433333444333333221 111122222 23445555544333 68999998776555
Q ss_pred C
Q 006634 594 P 594 (637)
Q Consensus 594 S 594 (637)
+
T Consensus 409 a 409 (456)
T TIGR01283 409 A 409 (456)
T ss_pred H
Confidence 4
No 254
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=30.42 E-value=72 Score=33.92 Aligned_cols=94 Identities=21% Similarity=0.269 Sum_probs=59.1
Q ss_pred HHHHhhhhhhcccchhhhhccccccCCCCCcccccCCCCChHHHHHHH-cCC-------ceeeEEEeecCHHHHHHHHHH
Q 006634 476 ARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGI-------KLKGVISIETSETNRRILKRW 547 (637)
Q Consensus 476 eR~k~Lgnsfqvdtv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~-aGi-------~~k~vvaVEid~~a~~t~r~~ 547 (637)
+|-++--+-.|.|....+|. .--+|+||.+--|.-+.-|.+ +.- .-+-+||||+-+.+
T Consensus 21 wRARSAFKLlqideef~i~~-------gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma------- 86 (294)
T KOG1099|consen 21 WRARSAFKLLQIDEEFQIFE-------GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA------- 86 (294)
T ss_pred chHHhHHHHhhhhhhhhHHh-------hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-------
Confidence 34455555567776554442 335799999999999877653 221 11237899987765
Q ss_pred hhhcCCCCCccccccccccChhhHHHhhhccC--CccEEEE-cCC
Q 006634 548 WESSGQTGELVQIEDIQALTTKKFESLIHKLG--SIDFVIC-QNS 589 (637)
Q Consensus 548 ~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g--~~DLVIG-GpP 589 (637)
.-.|.+.+.+||++.+.. +..+.-|| ..|||+. |.|
T Consensus 87 ----PI~GV~qlq~DIT~~sta--e~Ii~hfggekAdlVvcDGAP 125 (294)
T KOG1099|consen 87 ----PIEGVIQLQGDITSASTA--EAIIEHFGGEKADLVVCDGAP 125 (294)
T ss_pred ----ccCceEEeecccCCHhHH--HHHHHHhCCCCccEEEeCCCC
Confidence 345777788999987653 33333343 5788773 444
No 255
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=30.33 E-value=66 Score=34.03 Aligned_cols=65 Identities=20% Similarity=0.284 Sum_probs=41.8
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHH
Q 006634 501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFE 572 (637)
Q Consensus 501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie 572 (637)
...+-.+||+=|-.|||+.-+-+.|.. -|+|||.-..- -.|.=.+.+ -..++..+++.++++++.
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk--~VyavDVG~~Q-----l~~kLR~d~rV~~~E~tN~r~l~~~~~~ 142 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRGAK--HVYAVDVGYGQ-----LHWKLRNDPRVIVLERTNVRYLTPEDFT 142 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcCCc--EEEEEEccCCc-----cCHhHhcCCcEEEEecCChhhCCHHHcc
Confidence 356788999999999999999888874 58899976421 122211111 122345666766666554
No 256
>PRK14137 recX recombination regulator RecX; Provisional
Probab=29.36 E-value=1.9e+02 Score=29.43 Aligned_cols=28 Identities=18% Similarity=-0.009 Sum_probs=23.4
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCCC
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKLGKD 104 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~d 104 (637)
..+.+.+|..=||+.+.|..||+++-..
T Consensus 155 k~K~~~~L~rRGFs~~~I~~al~~~~~~ 182 (195)
T PRK14137 155 RASAYAFLARRGFSGAVIWPAIREVAAL 182 (195)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 4567789999999999999999876553
No 257
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=29.07 E-value=2.3e+02 Score=32.37 Aligned_cols=128 Identities=14% Similarity=0.225 Sum_probs=66.6
Q ss_pred hhhHHHHhcCCCCCcccCCCChH-HHHHhhhhhh---cccc----------------hhhhhccccccCCCCCcccccCC
Q 006634 453 PEHIELILGYPSNHTQAAGNSLT-ARLESLRHCF---QTDT----------------LGYHLSVLKSMFPGGLTMLSVFS 512 (637)
Q Consensus 453 ~~E~E~i~GfP~~~T~~~~~~~t-eR~k~Lgnsf---qvdt----------------v~~~lsvLK~~f~~~l~vLsLFS 512 (637)
...||.-||-|--+....|+..| ..++.|+..+ ..+. +...+...+.++. +.+| -+|.
T Consensus 254 A~~L~erfGiP~~~~~p~G~~~T~~~l~~la~~~~~~~~~~~~~~~~e~~i~~e~~~~~~~l~~~~~~l~-Gk~v-aI~~ 331 (475)
T PRK14478 254 ARKMEERYGIPFFEGSFYGIEDTSDSLRQIARLLVERGADAELVERTEALIAEEEAKAWAALEPYRPRLE-GKRV-LLYT 331 (475)
T ss_pred HHHHHHHhCCCEEecCCCcHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCEE-EEEc
Confidence 67788888888766554566666 4455666655 2221 1111223333343 3344 2233
Q ss_pred CCC---hHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEEEcCC
Q 006634 513 GIG---GAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNS 589 (637)
Q Consensus 513 GiG---GlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpP 589 (637)
|.. ++...|..+|+.+..+++-...+...+.++... ... .++..| .+..++.+.+.+ ..+||++|++-
T Consensus 332 ~~~~~~~la~~l~ElGm~v~~~~~~~~~~~~~~~l~~~~----~~~-~~v~~d---~~~~e~~~~i~~-~~pDliig~s~ 402 (475)
T PRK14478 332 GGVKSWSVVKALQELGMEVVGTSVKKSTDEDKERIKELM----GPD-AHMIDD---ANPRELYKMLKE-AKADIMLSGGR 402 (475)
T ss_pred CCchHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHc----CCC-cEEEeC---CCHHHHHHHHhh-cCCCEEEecCc
Confidence 321 344457889998866655555554434443321 112 223333 344555544433 46999999865
Q ss_pred CC
Q 006634 590 VP 591 (637)
Q Consensus 590 CQ 591 (637)
-.
T Consensus 403 ~~ 404 (475)
T PRK14478 403 SQ 404 (475)
T ss_pred hh
Confidence 43
No 258
>PRK14136 recX recombination regulator RecX; Provisional
Probab=28.96 E-value=6.2e+02 Score=27.86 Aligned_cols=75 Identities=11% Similarity=0.026 Sum_probs=47.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCcccccchhhhHH-HHH
Q 006634 79 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITL-QLL 157 (637)
Q Consensus 79 ~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~~~~~~~e~~d~~~d~d~~~~e~~~e~~~~~~~k~~-~L~ 157 (637)
.....|..-|.+.+.|..|++++.+ +.+ +++--++.-... ... .. .....|.. +|.
T Consensus 230 rIrqELrQKGId~eLIEqALeeieE-DE~-E~A~~L~eKK~~-~~~----------------~d----~kek~K~iRfL~ 286 (309)
T PRK14136 230 RIVSELKRHAVGDALVESVGAQLRE-TEF-ERAQAVWRKKFG-ALP----------------QT----PAERAKQARFLA 286 (309)
T ss_pred HHHHHHHHcCCCHHHHHHHHHhccH-hHH-HHHHHHHHHHhc-ccC----------------cC----HHHHHHHHHHHH
Confidence 3446888999999999999998843 322 233233322221 000 00 01223444 999
Q ss_pred hcCCCHHHHHHHHHhhCCC
Q 006634 158 EMGFSENQVSLAIEKFGSK 176 (637)
Q Consensus 158 ~MGfseeEas~Ai~r~G~d 176 (637)
.=||+-+.+..+|..+..+
T Consensus 287 rRGFS~D~I~~vLk~~~de 305 (309)
T PRK14136 287 ARGFSSATIVKLLKVGDDE 305 (309)
T ss_pred HCCCCHHHHHHHHHhchhc
Confidence 9999999999999876544
No 259
>COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair]
Probab=28.65 E-value=54 Score=33.58 Aligned_cols=33 Identities=21% Similarity=0.430 Sum_probs=26.8
Q ss_pred HHHHHhcCCCHHHHHHHHHhhCC---CCChhhhhhh
Q 006634 153 TLQLLEMGFSENQVSLAIEKFGS---KTPISELADK 185 (637)
Q Consensus 153 ~~~L~~MGfseeEas~Ai~r~G~---da~i~eLvD~ 185 (637)
...|+.+||++.|+..|+...-. +++++++.-.
T Consensus 160 v~AL~~LGy~~~e~~~av~~v~~~~~~~~~~~~Ik~ 195 (201)
T COG0632 160 VEALVALGYKEKEIKKAVKKVLKENPDADVEELIKE 195 (201)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 56999999999999999988774 5777766543
No 260
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=28.20 E-value=2.4e+02 Score=31.50 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=24.6
Q ss_pred hhhHHHHhcCCCCCcc-c-CCCChHHH-HHhhhhhhccc
Q 006634 453 PEHIELILGYPSNHTQ-A-AGNSLTAR-LESLRHCFQTD 488 (637)
Q Consensus 453 ~~E~E~i~GfP~~~T~-~-~~~~~teR-~k~Lgnsfqvd 488 (637)
...||+-||-|..+.. + .|+..|++ ++.|+..+..+
T Consensus 223 a~~L~~~~giP~i~~~~~P~G~~~t~~~l~~i~~~~g~~ 261 (427)
T cd01971 223 AQHLEEKYGQPYIHSPTLPIGAKATAEFLRQVAKFAGIE 261 (427)
T ss_pred HHHHHHHhCCceEecCCCccCHHHHHHHHHHHHHHhCCC
Confidence 6778999999987654 2 57777754 46666666544
No 261
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=28.15 E-value=1.3e+02 Score=34.50 Aligned_cols=83 Identities=22% Similarity=0.314 Sum_probs=64.8
Q ss_pred CCCcccccCCCCChHHHH----HHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 006634 503 GGLTMLSVFSGIGGAEVT----LHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL 578 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslG----L~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~ 578 (637)
.+-++||+.|--||=+.- ++.-|+ ++|.|.+..-.+++..+.+.....++++...|..++..+.+ .
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~----I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~------~ 310 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGV----IFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEF------P 310 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCce----EEecccchHHHHHHHHHHHHhCCCceEEEccCccccccccc------C
Confidence 479999999999997643 345664 89999999999999988877767788888888887665432 1
Q ss_pred CCccEEEEcCCCCCcCc
Q 006634 579 GSIDFVICQNSVPQIPN 595 (637)
Q Consensus 579 g~~DLVIGGpPCQ~FS~ 595 (637)
+.||=|.=-.||.+...
T Consensus 311 ~~fDRVLLDAPCSGtgv 327 (460)
T KOG1122|consen 311 GSFDRVLLDAPCSGTGV 327 (460)
T ss_pred cccceeeecCCCCCCcc
Confidence 36999999999998543
No 262
>COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair]
Probab=27.84 E-value=86 Score=32.14 Aligned_cols=34 Identities=29% Similarity=0.369 Sum_probs=26.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHhCC---CCcHHHHHHHH
Q 006634 81 RASLLMMNFSVNEVDFALDKLGK---DAPVYELVDFI 114 (637)
Q Consensus 81 ~~~lv~MGF~~eeV~~AI~~~G~---da~i~~Lld~I 114 (637)
+..|+.+||++.|+.+|++..-. +.++++++-.-
T Consensus 160 v~AL~~LGy~~~e~~~av~~v~~~~~~~~~~~~Ik~a 196 (201)
T COG0632 160 VEALVALGYKEKEIKKAVKKVLKENPDADVEELIKEA 196 (201)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 78999999999999999998875 45556665443
No 263
>PLN02823 spermine synthase
Probab=27.77 E-value=1.5e+02 Score=32.43 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=45.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcC----CCCCccccccccccChhhHHHhhhcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG----QTGELVQIEDIQALTTKKFESLIHKL 578 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn----~~g~l~~~~DI~~Lt~~~Ie~l~~~~ 578 (637)
+.-+||-|=.|.|++..-+.+.. ..+.++.||||+...++.+.|+.... .+...++.+|.++. |+ ...
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~----L~---~~~ 174 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAE----LE---KRD 174 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHH----Hh---hCC
Confidence 44567666555555544344432 23568899999999999998875321 12222445555432 11 123
Q ss_pred CCccEEEEcC
Q 006634 579 GSIDFVICQN 588 (637)
Q Consensus 579 g~~DLVIGGp 588 (637)
+.+|+|+.-.
T Consensus 175 ~~yDvIi~D~ 184 (336)
T PLN02823 175 EKFDVIIGDL 184 (336)
T ss_pred CCccEEEecC
Confidence 5799999863
No 264
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=27.38 E-value=61 Score=35.92 Aligned_cols=91 Identities=21% Similarity=0.318 Sum_probs=53.2
Q ss_pred ccccccC-CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhh-cCCC-----CCccccccccccC
Q 006634 495 SVLKSMF-PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES-SGQT-----GELVQIEDIQALT 567 (637)
Q Consensus 495 svLK~~f-~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~-tn~~-----g~l~~~~DI~~Lt 567 (637)
|+|=+.| +.+--+++|=||=||=-+=..+|||. -++++||.++..+--+.-+.+ ++.. ...++.+|-...
T Consensus 108 s~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~--~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~- 184 (389)
T KOG1975|consen 108 SVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIG--EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKE- 184 (389)
T ss_pred HHHHHHHhccccccceeccCCcccHhHhhhhccc--ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchh-
Confidence 3443433 33445788999999998889999995 588999998765543332221 1111 223455665443
Q ss_pred hhhHHHhhhccC-CccEEEEcCCC
Q 006634 568 TKKFESLIHKLG-SIDFVICQNSV 590 (637)
Q Consensus 568 ~~~Ie~l~~~~g-~~DLVIGGpPC 590 (637)
.|..++.... .||||...+-|
T Consensus 185 --~l~d~~e~~dp~fDivScQF~~ 206 (389)
T KOG1975|consen 185 --RLMDLLEFKDPRFDIVSCQFAF 206 (389)
T ss_pred --HHHHhccCCCCCcceeeeeeeE
Confidence 2333332122 39999765533
No 265
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=27.29 E-value=1.5e+02 Score=25.47 Aligned_cols=43 Identities=21% Similarity=0.157 Sum_probs=32.8
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHh----C------CCCcHHHHHHHHHHhhh
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKL----G------KDAPVYELVDFITAAQI 119 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~----G------~da~i~~Lld~I~a~q~ 119 (637)
-+..+.++..|||+++.|.-.++++ | |+++-..|+|.|+..|.
T Consensus 11 ~daA~dam~~lG~~~~~v~~vl~~LL~lY~~nW~lIEed~Y~~L~dai~e~~e 63 (65)
T PF10440_consen 11 IDAALDAMRQLGFSKKQVRPVLKNLLKLYDGNWELIEEDNYRVLADAIFEEQE 63 (65)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhhhcccHHHHHHHHHHHhh
Confidence 3455678889999999999998876 2 33445678889988765
No 266
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=27.09 E-value=1.8e+02 Score=29.95 Aligned_cols=87 Identities=15% Similarity=0.062 Sum_probs=53.6
Q ss_pred ccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHH-HHHHhhhcCCCCCccccccccccChhhHHH
Q 006634 495 SVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRI-LKRWWESSGQTGELVQIEDIQALTTKKFES 573 (637)
Q Consensus 495 svLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t-~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~ 573 (637)
.-|+.+++ --++++=||.|-.+.-|.+.=.+.-..++.|||+.|+++ +++- ..|.-.-..+..|.. .
T Consensus 37 ~eL~~~~~--~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA--~~n~~~~~~V~tdl~--------~ 104 (209)
T KOG3191|consen 37 AELKGHNP--EICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETA--RCNRVHIDVVRTDLL--------S 104 (209)
T ss_pred HHHhhcCc--eeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHH--HhcCCccceeehhHH--------h
Confidence 44566553 568999999999988877643355568899999998875 3332 112111011222221 1
Q ss_pred hhhccCCccEEEEcCCCCCcC
Q 006634 574 LIHKLGSIDFVICQNSVPQIP 594 (637)
Q Consensus 574 l~~~~g~~DLVIGGpPCQ~FS 594 (637)
-+ +.+.+|+++--||=-+-+
T Consensus 105 ~l-~~~~VDvLvfNPPYVpt~ 124 (209)
T KOG3191|consen 105 GL-RNESVDVLVFNPPYVPTS 124 (209)
T ss_pred hh-ccCCccEEEECCCcCcCC
Confidence 11 237899999999865554
No 267
>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []. The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.
Probab=26.74 E-value=79 Score=33.48 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=20.8
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHhC
Q 006634 76 LHIEKRASLLMMNFSVNEVDFALDKLG 102 (637)
Q Consensus 76 ~~~~~~~~lv~MGF~~eeV~~AI~~~G 102 (637)
.-..+++.|..+||++++|.+++.++-
T Consensus 242 ~l~~~i~~L~~lG~s~~ei~~mv~~~P 268 (345)
T PF02536_consen 242 KLKPKIEFLQSLGFSEEEIAKMVRRFP 268 (345)
T ss_dssp HHHHHHHHHHTTT--HHHHHHHHHHSG
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHhCc
Confidence 345677899999999999999998873
No 268
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=26.47 E-value=79 Score=35.01 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=31.6
Q ss_pred cCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHH
Q 006634 500 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNR 541 (637)
Q Consensus 500 ~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~ 541 (637)
+|. +-+|||.=||.|=+++=-.+||- +.|+|||.+..+.
T Consensus 58 lf~-dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~ia~ 96 (346)
T KOG1499|consen 58 LFK-DKTVLDVGCGTGILSMFAAKAGA--RKVYAVEASSIAD 96 (346)
T ss_pred hcC-CCEEEEcCCCccHHHHHHHHhCc--ceEEEEechHHHH
Confidence 453 45699999999999988889996 5788999887763
No 269
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=25.69 E-value=18 Score=40.98 Aligned_cols=74 Identities=19% Similarity=0.303 Sum_probs=50.6
Q ss_pred CCccc-cccccccchhhHHHhhhhhcc-CCceeecccccc-----hhcccccccccCCCCCCCCCCCCCCCccccccCCC
Q 006634 310 PPYFF-YGNVVDVSIDCWVKMSHFLYS-LEPEFVNSQYFS-----ALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHT 382 (637)
Q Consensus 310 ppfF~-yeNV~~~~~~~w~~IsrfL~~-i~Pe~vds~~fs-----aa~R~Rgy~hNLP~~~R~~~~p~~p~ti~e~lp~~ 382 (637)
|-|++ =||=.-+|...=-.+.+-|.+ +.=.+++|-|+. |+.+++.||.|||..-. -=+.+|-.|-
T Consensus 332 pvy~~a~~~DhI~P~~Sv~~g~~l~~g~~~f~l~~sGHIa~vVN~p~~~k~~~w~n~~~~~~--------~Wl~~a~~~~ 403 (445)
T COG3243 332 PVYNLAAEEDHIAPWSSVYLGARLLGGEVTFVLSRSGHIAGVVNPPGNAKYQYWTNLPADAE--------AWLSGAKEHP 403 (445)
T ss_pred ceEEEeecccccCCHHHHHHHHHhcCCceEEEEecCceEEEEeCCcchhhhhcCCCCcchHH--------HHHHhhccCC
Confidence 44444 456666777777788888876 444556676664 68999999999776632 1233455677
Q ss_pred CCCCCCcCc
Q 006634 383 KKWWPSWDT 391 (637)
Q Consensus 383 ~~~wp~wd~ 391 (637)
-+|||.|+.
T Consensus 404 gsww~~w~~ 412 (445)
T COG3243 404 GSWWPHWQQ 412 (445)
T ss_pred CccccchHH
Confidence 789999986
No 270
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=25.11 E-value=76 Score=31.98 Aligned_cols=36 Identities=17% Similarity=0.359 Sum_probs=27.7
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhhCC--CCChhhhhhhh
Q 006634 151 EITLQLLEMGFSENQVSLAIEKFGS--KTPISELADKI 186 (637)
Q Consensus 151 ~k~~~L~~MGfseeEas~Ai~r~G~--da~i~eLvD~I 186 (637)
+-...|+.+||+..||..||.+.-. +.++++++...
T Consensus 149 e~~~aL~~LGy~~~e~~~ai~~~~~~~~~~~~~li~~a 186 (191)
T TIGR00084 149 ELFEALVSLGYKPQEIQQALKKIKNKPDFAIEQDIEEA 186 (191)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 3345999999999999999999843 56777776543
No 271
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=25.00 E-value=84 Score=38.31 Aligned_cols=66 Identities=27% Similarity=0.414 Sum_probs=45.7
Q ss_pred cccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccCh
Q 006634 498 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT 568 (637)
Q Consensus 498 K~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~ 568 (637)
+.+| .+.+++|=|+|-|.+-+=..|+|.. |+|||.+|++--+++.-.+-....|. ..+.|+.....
T Consensus 86 ~~~~-~~~~~lDPfAG~GSIPlEAlRLG~~---v~AvelnPvAylfLKavlEyPkkfg~-~liedv~~~~~ 151 (875)
T COG1743 86 ETPF-EGPKLLDPFAGGGSIPLEALRLGLE---VVAVELNPVAYLFLKAVLEYPKKFGP-ELIEDVERWGA 151 (875)
T ss_pred cCcc-cCCcccccccCCCccchHHHhcCce---eEEEecccHHHHHHHHHHhcchhhhH-HHHHHHHHHHH
Confidence 4445 3678999999999998888899964 78999999999888875542111121 22456655544
No 272
>PF03216 Rhabdo_ncap_2: Rhabdovirus nucleoprotein; InterPro: IPR004902 This is a family of Rhabdovirus nucleocapsid proteins. These proteins undergo phosphorylation.; GO: 0019013 viral nucleocapsid
Probab=24.75 E-value=73 Score=34.57 Aligned_cols=58 Identities=17% Similarity=0.212 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhhcCCCCCCCcccCcCCCCCCCCCCCccCCCCCCCCCCccccchhhHHHH
Q 006634 3 FSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMDEGLHIEKRA 82 (637)
Q Consensus 3 F~~e~V~KaI~e~Ge~~~d~iLE~Lltysal~~~~s~ss~s~~~~~~d~~~~~~s~~~~~~~~~~e~~~~~~s~~~~~~~ 82 (637)
|.-+|+.+|+-.-|-..+..-|-.||.|--.+..+ +.-.-+..
T Consensus 41 ~d~~~I~~AlsavGGpqT~~ALsvLlafV~~g~~~-------------------------------------~~~et~~k 83 (357)
T PF03216_consen 41 TDGKMIKRALSAVGGPQTNQALSVLLAFVTQGTNQ-------------------------------------DDTETKCK 83 (357)
T ss_pred cchHHHHHHHHHcCCchHHHHHHHHHHHHHcCCCh-------------------------------------hhhhhHHH
Confidence 56789999999999999999999999996554321 11234667
Q ss_pred HHHhcCCCHHHHHHH
Q 006634 83 SLLMMNFSVNEVDFA 97 (637)
Q Consensus 83 ~lv~MGF~~eeV~~A 97 (637)
-|..|||..+.+..|
T Consensus 84 iL~dmgFkv~~~p~a 98 (357)
T PF03216_consen 84 ILTDMGFKVTQVPRA 98 (357)
T ss_pred HHHHhCceeEecccC
Confidence 889999999988776
No 273
>PF07553 Lipoprotein_Ltp: Host cell surface-exposed lipoprotein; InterPro: IPR011434 This domain is found as 1-3 copies in a small family of proteins of unknown function.
Probab=24.66 E-value=83 Score=25.26 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=21.1
Q ss_pred hhhHHHHHHHhc---CCCHHHHHHHHHH
Q 006634 76 LHIEKRASLLMM---NFSVNEVDFALDK 100 (637)
Q Consensus 76 ~~~~~~~~lv~M---GF~~eeV~~AI~~ 100 (637)
|+..++..|+.= ||+++++.-||+-
T Consensus 20 Sk~~l~~QL~se~ge~Ft~e~A~YAv~~ 47 (48)
T PF07553_consen 20 SKQGLYDQLTSEYGEGFTEEEAQYAVDH 47 (48)
T ss_pred CHHHHHHHHHhhcccCCCHHHHHHHHHc
Confidence 577888899865 9999999999874
No 274
>PF08587 UBA_2: Ubiquitin associated domain (UBA) ; InterPro: IPR013896 This is a UBA (ubiquitin associated) protein []. Ubiquitin is involved in intracellular proteolysis. ; GO: 0004674 protein serine/threonine kinase activity; PDB: 3H4J_B.
Probab=24.44 E-value=24 Score=28.21 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=15.3
Q ss_pred HHHHHHH-hcCCCHHHHHHHHHH
Q 006634 79 EKRASLL-MMNFSVNEVDFALDK 100 (637)
Q Consensus 79 ~~~~~lv-~MGF~~eeV~~AI~~ 100 (637)
+++..|- .|||.+++|..||++
T Consensus 4 ~vv~~Ls~tMGY~kdeI~eaL~~ 26 (46)
T PF08587_consen 4 DVVSKLSKTMGYDKDEIYEALES 26 (46)
T ss_dssp CCHHHHHCTT---HHHHHHHCCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHc
Confidence 3455666 899999999999988
No 275
>PRK14134 recX recombination regulator RecX; Provisional
Probab=23.51 E-value=2.9e+02 Score=29.49 Aligned_cols=79 Identities=10% Similarity=0.097 Sum_probs=48.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCcccccchhhhHH-HHH
Q 006634 79 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITL-QLL 157 (637)
Q Consensus 79 ~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~~~~~~~e~~d~~~d~d~~~~e~~~e~~~~~~~k~~-~L~ 157 (637)
.....|..-|.+.+.|..|+++..++... +++--++.-..... . ..+.+....-.|+. +|.
T Consensus 129 ~I~~eL~qKGI~~~iIe~al~~~~~e~e~-e~a~~l~~Kk~~~~------------~-----~~~~~~~k~k~Kl~~~L~ 190 (283)
T PRK14134 129 KIKYTLLNKGIKENIIIEKINNIDEEKEK-KVAYKLAEKKYKIL------------I-----LSEKNKFKIYKKLGPYLI 190 (283)
T ss_pred HHHHHHHHCCCCHHHHHHHHHhCChhhHH-HHHHHHHHHhhccc------------c-----cccccHHHHHHHHHHHHH
Confidence 34468999999999999999987655432 22222222111110 0 00000111234564 999
Q ss_pred hcCCCHHHHHHHHHhhCC
Q 006634 158 EMGFSENQVSLAIEKFGS 175 (637)
Q Consensus 158 ~MGfseeEas~Ai~r~G~ 175 (637)
.=||+-+.+..||..+-.
T Consensus 191 rrGFs~~~I~~vl~~~~~ 208 (283)
T PRK14134 191 SRGYSSNIAEWILNELIK 208 (283)
T ss_pred HCCCCHHHHHHHHHHHHh
Confidence 999999999999988754
No 276
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=22.65 E-value=3e+02 Score=30.85 Aligned_cols=129 Identities=13% Similarity=0.154 Sum_probs=65.6
Q ss_pred hhhHHHHhcCCCCCcccCCCChH-HHHHhhhhhhcccc-------hhh----h---hccccccCCCCCcccccCCCCC--
Q 006634 453 PEHIELILGYPSNHTQAAGNSLT-ARLESLRHCFQTDT-------LGY----H---LSVLKSMFPGGLTMLSVFSGIG-- 515 (637)
Q Consensus 453 ~~E~E~i~GfP~~~T~~~~~~~t-eR~k~Lgnsfqvdt-------v~~----~---lsvLK~~f~~~l~vLsLFSGiG-- 515 (637)
...||+-||-|...+...|+..+ +.++.|+..+..+. +.. . +...+.++ .+.+|+ +|.|..
T Consensus 235 a~~Le~~fGiP~~~~~p~Gi~~t~~~l~~ia~~~g~~~~~~~e~~i~~e~~~~~~~l~~~~~~L-~Gkrv~-i~~g~~~~ 312 (421)
T cd01976 235 ARMMEEKYGIPWMEYNFFGPTKIAESLRKIAAYFDDEITAKTEEVIAEYKPAMEAVIAKYRPRL-EGKTVM-LYVGGLRP 312 (421)
T ss_pred HHHHHHHhCCcEEecccCCHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCEEE-EECCCCcH
Confidence 67889999999887766677666 44555655554321 111 1 11222333 345555 555432
Q ss_pred -hHHHHHHHcCCceeeEEEeec--CHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEEEcCCCCC
Q 006634 516 -GAEVTLHRLGIKLKGVISIET--SETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQ 592 (637)
Q Consensus 516 -GlslGL~~aGi~~k~vvaVEi--d~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~ 592 (637)
.+...++.+|+.+. +++... ++...+..+. . ..+. ++. .+-+..++++.+.+ -++|||+|++....
T Consensus 313 ~~~~~~l~elGmevv-~~g~~~~~~~~~~~~~~~----~-~~~~-~i~---~~~d~~e~~~~i~~-~~pDliig~~~~~~ 381 (421)
T cd01976 313 RHYIGAYEDLGMEVV-GTGYEFAHRDDYERTEVI----P-KEGT-LLY---DDVTHYELEEFVKR-LKPDLIGSGIKEKY 381 (421)
T ss_pred HHHHHHHHHCCCEEE-EEEeecCCHHHHhhHHhh----c-CCce-EEE---cCCCHHHHHHHHHH-hCCCEEEecCcchh
Confidence 33445678999753 233432 2221122211 0 0111 111 22233444444432 37899999998766
Q ss_pred cC
Q 006634 593 IP 594 (637)
Q Consensus 593 FS 594 (637)
.+
T Consensus 382 ~a 383 (421)
T cd01976 382 VF 383 (421)
T ss_pred hh
Confidence 65
No 277
>PRK10904 DNA adenine methylase; Provisional
Probab=22.37 E-value=49 Score=34.78 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=34.9
Q ss_pred hhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHH
Q 006634 493 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR 546 (637)
Q Consensus 493 ~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~ 546 (637)
++..|.+++|..-+.++-|+|.|+..+.+.. +.++..|+|+.-...|+.
T Consensus 17 l~~~i~~~~P~~~~yvEPF~GggaV~l~~~~-----~~~ilND~n~~Lin~y~~ 65 (271)
T PRK10904 17 LLDDIKRHLPKGECLIEPFVGAGSVFLNTDF-----SRYILADINSDLISLYNI 65 (271)
T ss_pred HHHHHHHhCCCCCcEEeccCCcceeeEecCC-----CeEEEEeCCHHHHHHHHH
Confidence 3445566677656799999999988776522 335668999998777664
No 278
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=22.28 E-value=18 Score=31.05 Aligned_cols=34 Identities=15% Similarity=0.013 Sum_probs=24.3
Q ss_pred cccCCCCChHHHHHHHcCCceeeEEEeecCHHHHH
Q 006634 508 LSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRR 542 (637)
Q Consensus 508 LsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~ 542 (637)
||+=||.|.+...+.+.. +..-++++|+++.+..
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~ 34 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLE 34 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTS
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHH
Confidence 467799999988887773 3345779999999863
No 279
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=22.19 E-value=2.1e+02 Score=32.19 Aligned_cols=126 Identities=13% Similarity=0.136 Sum_probs=67.9
Q ss_pred ChhhHHHHhcCCCCCc-ccCCCChHHH-HHhhhhhhcccch-------hhhhcccccc--CCCCCcccccCCCC---ChH
Q 006634 452 DPEHIELILGYPSNHT-QAAGNSLTAR-LESLRHCFQTDTL-------GYHLSVLKSM--FPGGLTMLSVFSGI---GGA 517 (637)
Q Consensus 452 e~~E~E~i~GfP~~~T-~~~~~~~teR-~k~Lgnsfqvdtv-------~~~lsvLK~~--f~~~l~vLsLFSGi---GGl 517 (637)
-...||+-||-|..+. ...|+..+++ ++.|...+..+.- +..+..+.++ +-.+.+| -++.|. -|+
T Consensus 248 ~a~~Lee~~giP~~~~~~p~G~~~t~~~l~~l~~~~g~~~~~~~~~~r~~~~~~l~~~~~~l~Gkrv-ai~~~~~~~~~l 326 (432)
T TIGR01285 248 AASLLADRCGVPYIVFPSLMGLEAVDAFLHVLMKISGRAVPERFERQRRQLQDAMLDTHFFLGGKKV-AIAAEPDLLAAW 326 (432)
T ss_pred HHHHHHHHHCCCeEecCCCcChHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHHHHHHHhhCCCEE-EEEcCHHHHHHH
Confidence 3778899999998776 4557777765 6666665543221 1122222221 1124444 344433 244
Q ss_pred HHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEEEcCCCCCcC
Q 006634 518 EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIP 594 (637)
Q Consensus 518 slGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS 594 (637)
.-.|..+|+.+..+++-...+.. +. . ..+ .+..+|. .++++++.+ .++|+|+|++-....+
T Consensus 327 ~~~l~elGm~v~~~~~~~~~~~~----~~----~-~~~-~~~~~D~-----~~l~~~i~~-~~~dliig~s~~k~~A 387 (432)
T TIGR01285 327 ATFFTSMGAQIVAAVTTTGSPLL----QK----L-PVE-TVVIGDL-----EDLEDLACA-AGADLLITNSHGRALA 387 (432)
T ss_pred HHHHHHCCCEEEEEEeCCCCHHH----Hh----C-CcC-cEEeCCH-----HHHHHHHhh-cCCCEEEECcchHHHH
Confidence 44577899987666655554432 11 1 112 2333554 345554433 3699999988665444
No 280
>PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=22.16 E-value=89 Score=31.69 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=26.0
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhhCC--CCChhhhhh
Q 006634 151 EITLQLLEMGFSENQVSLAIEKFGS--KTPISELAD 184 (637)
Q Consensus 151 ~k~~~L~~MGfseeEas~Ai~r~G~--da~i~eLvD 184 (637)
|-...|+.+||+..||..||.++-. +.++++++-
T Consensus 151 e~~~aL~~LGy~~~ea~~ai~~i~~~~~~~~~~~ir 186 (195)
T PRK14604 151 ELSEILISLGYSAAEAAAAIAALPSDAPPDLEERLR 186 (195)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 4446999999999999999999843 455666543
No 281
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=21.66 E-value=31 Score=41.92 Aligned_cols=45 Identities=7% Similarity=0.021 Sum_probs=0.0
Q ss_pred CCccCCCCCCCCCCccccchhhHHHHHHHhcCCCHHHHHHHHHHhCC
Q 006634 57 PEISTMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGK 103 (637)
Q Consensus 57 s~~~~~~~~~~e~~~~~~s~~~~~~~~lv~MGF~~eeV~~AI~~~G~ 103 (637)
.++.+..+++.|++. ++..--+.+.||.-|.|++++.+|-+|.=+
T Consensus 692 fDL~~~seSe~eDdd--e~~R~~L~nTLVNqGi~eerAaria~RAfP 736 (787)
T PF03115_consen 692 FDLHPSSESEDEDDD--ENNRVTLFNTLVNQGIPEERAARIAKRAFP 736 (787)
T ss_dssp -----------------------------------------------
T ss_pred cccCccccccccccc--chhHHHHHHHHHHcCCCHHHHHhhhhccCC
Confidence 344444444444433 244555678999999999999887665544
No 282
>PHA01634 hypothetical protein
Probab=21.49 E-value=1.9e+02 Score=28.32 Aligned_cols=43 Identities=19% Similarity=0.113 Sum_probs=36.7
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHh
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 548 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~ 548 (637)
+-+|+|+=++||--++=|--.|. +-|+++|.++..+++++.+-
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~GA--K~Vva~E~~~kl~k~~een~ 71 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLRGA--SFVVQYEKEEKLRKKWEEVC 71 (156)
T ss_pred CCEEEEecCCccchhhHHhhcCc--cEEEEeccCHHHHHHHHHHh
Confidence 46899999999999999999997 46899999999888877643
No 283
>PF07553 Lipoprotein_Ltp: Host cell surface-exposed lipoprotein; InterPro: IPR011434 This domain is found as 1-3 copies in a small family of proteins of unknown function.
Probab=21.48 E-value=83 Score=25.27 Aligned_cols=19 Identities=32% Similarity=0.632 Sum_probs=16.0
Q ss_pred HHHhc---CCCHHHHHHHHHhh
Q 006634 155 QLLEM---GFSENQVSLAIEKF 173 (637)
Q Consensus 155 ~L~~M---GfseeEas~Ai~r~ 173 (637)
.|+.- ||+++||..||+.+
T Consensus 27 QL~se~ge~Ft~e~A~YAv~~l 48 (48)
T PF07553_consen 27 QLTSEYGEGFTEEEAQYAVDHL 48 (48)
T ss_pred HHHhhcccCCCHHHHHHHHHcC
Confidence 77754 99999999999863
No 284
>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=21.43 E-value=91 Score=31.86 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=23.3
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCC
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKLGK 103 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~ 103 (637)
.++.++.|+.+||++.++.+|+.++-.
T Consensus 144 ~~ea~~AL~~LGy~~~ea~~al~~v~~ 170 (196)
T PRK13901 144 FKELEQSIVNMGFDRKLVNSAIKEIML 170 (196)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 467889999999999999999987643
No 285
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=21.42 E-value=1.8e+02 Score=30.61 Aligned_cols=72 Identities=22% Similarity=0.213 Sum_probs=45.8
Q ss_pred hhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCC-cccccccc
Q 006634 491 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQ 564 (637)
Q Consensus 491 ~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~-l~~~~DI~ 564 (637)
++++..| +.. .|.+||+-=.|.|.|+++|-++=-+-=-|++.|+.+.-.++-+.++........ .+.++||.
T Consensus 30 ~~I~~~l-~i~-pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~ 102 (247)
T PF08704_consen 30 SYILMRL-DIR-PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVC 102 (247)
T ss_dssp HHHHHHT-T---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GG
T ss_pred HHHHHHc-CCC-CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEeccee
Confidence 4444444 333 478999999999999999987421112478999999988888888876544332 35678885
No 286
>PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M7 (snapalysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. With a molecular weight of around 16kDa, Streptomyces extracellular neutral protease is one of the smallest known proteases []; it is capable of hydrolysing milk proteins []. The enzyme is synthesised as a proenzyme with a signal peptide, a propeptide and an active domain that contains the conserved HEXXH motif characteristic of metalloproteases. Although family M7 shows active site sequence similarity to other members, it differs in one major respect: the third zinc ligand appears to be an aspartate residue rather than the usual histidine.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 1C7K_A 1KUH_A.
Probab=20.99 E-value=25 Score=33.78 Aligned_cols=18 Identities=22% Similarity=0.460 Sum_probs=12.1
Q ss_pred CChhhHHHHhcCCCCCcc
Q 006634 451 VDPEHIELILGYPSNHTQ 468 (637)
Q Consensus 451 le~~E~E~i~GfP~~~T~ 468 (637)
+..+|+-+|||+|++|+-
T Consensus 80 IaaHE~GHiLGLPD~y~G 97 (132)
T PF02031_consen 80 IAAHELGHILGLPDHYPG 97 (132)
T ss_dssp HHHHHHHHHHT----TTS
T ss_pred eeeehhccccCCCCCCCC
Confidence 448999999999999986
No 287
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=20.97 E-value=53 Score=34.31 Aligned_cols=47 Identities=19% Similarity=0.202 Sum_probs=32.5
Q ss_pred ccccccCCC-CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHH
Q 006634 495 SVLKSMFPG-GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR 546 (637)
Q Consensus 495 svLK~~f~~-~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~ 546 (637)
..+.+++|. .-+.++.|+|.|+..+.+.. ..++..|+|+.-...|+.
T Consensus 16 ~~i~~~~p~~~~~yvEPF~Gggsv~l~~~~-----~~~~lND~n~~Li~~~~~ 63 (266)
T TIGR00571 16 PEIKKHLPKNFNCLVEPFVGGGAVFFNLNP-----KRYLLNDINEDLINLYKA 63 (266)
T ss_pred HHHHHhcCcccCEEEEecCCcchhheeecC-----cEEEEecCCHHHHHHHHH
Confidence 334455564 34799999998888765532 236678999998877664
Done!