Query 006634
Match_columns 637
No_of_seqs 235 out of 1013
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 04:51:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006634.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006634hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ubt_Y Modification methylase 99.9 2.6E-26 9.1E-31 235.6 6.9 105 505-636 1-105 (331)
2 2qrv_A DNA (cytosine-5)-methyl 99.9 1.2E-24 4E-29 225.0 11.2 116 500-635 12-127 (295)
3 4h0n_A DNMT2; SAH binding, tra 99.9 1.1E-23 3.6E-28 220.9 9.7 110 504-635 3-113 (333)
4 3qv2_A 5-cytosine DNA methyltr 99.9 7.5E-24 2.6E-28 221.7 8.5 117 496-635 2-124 (327)
5 3me5_A Cytosine-specific methy 99.9 2.3E-23 7.9E-28 228.3 9.2 125 504-636 88-222 (482)
6 2c7p_A Modification methylase 99.9 1.4E-22 4.9E-27 211.7 10.8 106 503-636 10-115 (327)
7 3g7u_A Cytosine-specific methy 99.9 7.8E-23 2.7E-27 217.5 8.8 113 504-636 2-114 (376)
8 1g55_A DNA cytosine methyltran 99.9 1.6E-22 5.3E-27 212.1 8.8 110 504-635 2-113 (343)
9 4ft4_B DNA (cytosine-5)-methyl 99.9 1.6E-22 5.3E-27 231.3 7.5 122 502-636 210-427 (784)
10 4dkj_A Cytosine-specific methy 99.8 5.9E-22 2E-26 212.9 7.3 111 503-631 9-167 (403)
11 3swr_A DNA (cytosine-5)-methyl 99.8 1.2E-19 4.2E-24 212.9 5.8 119 502-636 538-664 (1002)
12 3av4_A DNA (cytosine-5)-methyl 99.8 1.4E-19 4.9E-24 216.9 3.5 118 503-636 850-975 (1330)
13 2qrv_B DNA (cytosine-5)-methyl 99.7 5E-19 1.7E-23 177.5 5.7 86 503-635 32-117 (230)
14 2pv0_B DNA (cytosine-5)-methyl 99.7 6E-18 2.1E-22 180.3 7.6 87 502-635 187-273 (386)
15 2qrv_A DNA (cytosine-5)-methyl 99.5 2.5E-14 8.6E-19 147.9 9.7 160 310-502 132-293 (295)
16 4h0n_A DNMT2; SAH binding, tra 99.4 3E-14 1E-18 149.4 2.9 177 309-498 111-332 (333)
17 3qv2_A 5-cytosine DNA methyltr 99.4 1.5E-13 5.2E-18 143.8 3.8 178 309-501 122-325 (327)
18 3ubt_Y Modification methylase 98.9 2.2E-10 7.7E-15 117.3 0.2 192 307-499 100-322 (331)
19 4dkj_A Cytosine-specific methy 98.8 1.7E-09 5.7E-14 116.5 4.4 187 307-503 175-394 (403)
20 3me5_A Cytosine-specific methy 98.8 5.5E-09 1.9E-13 114.8 7.4 177 307-501 217-456 (482)
21 2c7p_A Modification methylase 98.7 9.2E-09 3.1E-13 107.5 6.2 182 308-500 111-321 (327)
22 4ae4_A Ubiquitin-associated pr 98.7 1.6E-08 5.4E-13 92.2 6.7 98 1-118 18-115 (118)
23 2qrv_B DNA (cytosine-5)-methyl 98.6 4.3E-09 1.5E-13 105.7 1.2 60 304-364 116-176 (230)
24 1g55_A DNA cytosine methyltran 98.6 3.1E-08 1.1E-12 103.7 7.1 54 444-497 288-341 (343)
25 4ae4_A Ubiquitin-associated pr 98.6 1.1E-07 3.8E-12 86.6 8.3 103 76-188 7-113 (118)
26 4ft4_B DNA (cytosine-5)-methyl 98.3 7.2E-07 2.5E-11 102.2 6.9 55 437-493 679-733 (784)
27 2lbc_A Ubiquitin carboxyl-term 98.1 1.5E-05 5.2E-10 72.6 10.4 106 78-189 4-116 (126)
28 3g7u_A Cytosine-specific methy 98.0 2.6E-06 9E-11 90.6 3.5 53 445-499 313-365 (376)
29 2lbc_A Ubiquitin carboxyl-term 97.9 4.9E-05 1.7E-09 69.3 10.7 102 1-118 13-117 (126)
30 3c0k_A UPF0064 protein YCCW; P 97.8 5.5E-05 1.9E-09 79.9 9.6 86 503-594 220-307 (396)
31 2pv0_B DNA (cytosine-5)-methyl 97.7 1.7E-05 5.6E-10 85.1 4.3 54 311-365 280-333 (386)
32 1wy7_A Hypothetical protein PH 97.6 0.00019 6.5E-09 67.5 8.5 78 503-594 49-126 (207)
33 2igt_A SAM dependent methyltra 97.5 0.00012 4E-09 76.4 7.5 85 503-594 153-239 (332)
34 3k6r_A Putative transferase PH 97.5 0.00011 3.6E-09 75.5 6.4 82 500-592 122-204 (278)
35 2frn_A Hypothetical protein PH 97.5 0.00015 5.1E-09 73.0 7.3 80 502-592 124-204 (278)
36 3gdh_A Trimethylguanosine synt 97.4 0.00019 6.6E-09 69.2 6.9 81 503-595 78-159 (241)
37 3swr_A DNA (cytosine-5)-methyl 97.4 0.00022 7.4E-09 84.7 8.0 48 447-496 946-993 (1002)
38 2yx1_A Hypothetical protein MJ 97.3 0.00045 1.5E-08 71.7 8.7 76 502-592 194-270 (336)
39 1ws6_A Methyltransferase; stru 97.3 0.00048 1.6E-08 62.0 6.9 83 501-591 39-121 (171)
40 4dmg_A Putative uncharacterize 97.2 0.00035 1.2E-08 74.7 6.6 77 503-590 214-290 (393)
41 3p9n_A Possible methyltransfer 97.2 0.00031 1.1E-08 65.5 5.3 81 503-591 44-124 (189)
42 3a27_A TYW2, uncharacterized p 97.2 0.00069 2.4E-08 68.0 8.0 80 501-590 117-196 (272)
43 2fpo_A Methylase YHHF; structu 97.2 0.00051 1.7E-08 65.5 6.6 77 504-589 55-131 (202)
44 2b78_A Hypothetical protein SM 97.2 0.00057 1.9E-08 72.4 7.4 86 503-594 212-299 (385)
45 2ift_A Putative methylase HI07 97.1 0.00055 1.9E-08 65.2 6.0 79 504-590 54-135 (201)
46 2as0_A Hypothetical protein PH 97.1 0.00098 3.3E-08 70.3 8.3 86 503-594 217-303 (396)
47 3ajd_A Putative methyltransfer 97.1 0.00061 2.1E-08 68.3 6.1 87 503-595 83-171 (274)
48 1ne2_A Hypothetical protein TA 97.0 0.0013 4.5E-08 61.7 7.4 74 503-594 51-124 (200)
49 3bt7_A TRNA (uracil-5-)-methyl 97.0 0.00097 3.3E-08 69.9 6.8 84 504-594 214-309 (369)
50 1wgn_A UBAP1, ubiquitin associ 96.9 0.00079 2.7E-08 54.8 4.4 42 75-118 17-58 (63)
51 3evz_A Methyltransferase; NYSG 96.9 0.0023 8E-08 61.0 8.2 83 501-594 53-137 (230)
52 1wxx_A TT1595, hypothetical pr 96.9 0.0018 6.2E-08 68.1 8.0 85 503-594 209-293 (382)
53 2fhp_A Methylase, putative; al 96.8 0.0025 8.7E-08 58.2 7.7 81 503-589 44-125 (187)
54 3lpm_A Putative methyltransfer 96.8 0.0024 8.1E-08 62.9 7.4 83 503-593 49-132 (259)
55 3grz_A L11 mtase, ribosomal pr 96.7 0.0024 8E-08 60.0 7.0 87 494-592 51-137 (205)
56 3av4_A DNA (cytosine-5)-methyl 96.7 0.0022 7.5E-08 78.1 8.3 50 308-357 971-1029(1330)
57 1ixk_A Methyltransferase; open 96.7 0.0036 1.2E-07 64.3 8.5 85 503-595 118-202 (315)
58 4dzr_A Protein-(glutamine-N5) 96.7 0.0015 5.1E-08 60.6 5.1 87 502-594 29-115 (215)
59 2jjq_A Uncharacterized RNA met 96.6 0.0036 1.2E-07 67.4 8.0 78 502-593 289-366 (425)
60 2b9e_A NOL1/NOP2/SUN domain fa 96.6 0.0045 1.6E-07 64.0 8.3 87 503-595 102-189 (309)
61 3mti_A RRNA methylase; SAM-dep 96.5 0.0042 1.4E-07 57.2 7.1 84 497-590 16-99 (185)
62 3tm4_A TRNA (guanine N2-)-meth 96.5 0.0056 1.9E-07 64.3 8.9 80 502-590 216-296 (373)
63 2h00_A Methyltransferase 10 do 96.5 0.0048 1.6E-07 60.1 7.8 86 503-594 65-154 (254)
64 3axs_A Probable N(2),N(2)-dime 96.5 0.0028 9.4E-08 68.0 6.5 80 503-592 52-137 (392)
65 2g3q_A Protein YBL047C; endocy 96.5 0.0039 1.3E-07 46.6 5.2 38 77-116 4-41 (43)
66 3v97_A Ribosomal RNA large sub 96.5 0.0046 1.6E-07 70.8 8.1 83 503-594 539-623 (703)
67 2h1r_A Dimethyladenosine trans 96.4 0.0025 8.7E-08 65.0 5.4 100 479-593 18-119 (299)
68 3tma_A Methyltransferase; thum 96.4 0.006 2.1E-07 63.1 8.1 80 503-591 203-283 (354)
69 1nv8_A HEMK protein; class I a 96.4 0.0063 2.1E-07 61.7 8.1 81 504-594 124-206 (284)
70 2esr_A Methyltransferase; stru 96.4 0.0056 1.9E-07 55.9 7.0 79 503-590 31-110 (177)
71 2b3t_A Protein methyltransfera 96.4 0.0054 1.8E-07 60.9 7.4 82 503-594 109-190 (276)
72 2ekk_A UBA domain from E3 ubiq 96.4 0.0023 7.9E-08 48.8 3.6 38 77-117 9-46 (47)
73 1vg5_A RSGI RUH-014, rhomboid 96.4 0.0038 1.3E-07 52.4 5.2 42 76-119 28-69 (73)
74 1ify_A HHR23A, UV excision rep 96.3 0.0049 1.7E-07 47.6 5.2 40 76-117 7-46 (49)
75 2dak_A Ubiquitin carboxyl-term 96.3 0.0045 1.5E-07 50.1 4.8 41 77-119 9-49 (63)
76 1whc_A RSGI RUH-027, UBA/UBX 3 96.3 0.0045 1.5E-07 50.5 4.8 40 79-119 11-50 (64)
77 2ozv_A Hypothetical protein AT 96.2 0.0084 2.9E-07 59.5 7.3 89 503-593 36-128 (260)
78 3m4x_A NOL1/NOP2/SUN family pr 96.2 0.0044 1.5E-07 67.7 5.7 85 503-595 105-190 (456)
79 1zq9_A Probable dimethyladenos 96.1 0.0055 1.9E-07 62.0 5.9 100 479-593 4-106 (285)
80 3ll7_A Putative methyltransfer 96.1 0.0076 2.6E-07 65.1 7.1 79 504-591 94-174 (410)
81 1wji_A Tudor domain containing 96.1 0.0081 2.8E-07 48.9 5.5 40 78-119 10-49 (63)
82 1ve3_A Hypothetical protein PH 96.1 0.013 4.4E-07 55.2 7.8 76 502-589 37-112 (227)
83 2dul_A N(2),N(2)-dimethylguano 96.1 0.0064 2.2E-07 64.6 6.2 79 503-591 47-142 (378)
84 3m6w_A RRNA methylase; rRNA me 96.0 0.0083 2.8E-07 65.7 7.0 85 503-595 101-185 (464)
85 2frx_A Hypothetical protein YE 96.0 0.01 3.5E-07 65.0 7.4 85 503-595 117-202 (479)
86 1uwv_A 23S rRNA (uracil-5-)-me 96.0 0.013 4.4E-07 62.8 8.1 85 503-594 286-370 (433)
87 1vek_A UBP14, ubiquitin-specif 96.0 0.016 5.5E-07 49.7 7.1 42 77-119 29-70 (84)
88 1veg_A NEDD8 ultimate buster-1 95.9 0.0088 3E-07 51.4 5.3 41 77-119 29-69 (83)
89 2vdv_E TRNA (guanine-N(7)-)-me 95.9 0.012 4.1E-07 57.4 6.9 85 503-593 49-141 (246)
90 1dus_A MJ0882; hypothetical pr 95.9 0.013 4.4E-07 53.3 6.6 77 503-591 52-130 (194)
91 2dag_A Ubiquitin carboxyl-term 95.9 0.0093 3.2E-07 50.0 5.0 42 77-119 9-50 (74)
92 2pxx_A Uncharacterized protein 95.9 0.015 5.1E-07 54.0 7.0 81 498-590 37-117 (215)
93 3lbf_A Protein-L-isoaspartate 95.9 0.023 8E-07 53.2 8.4 80 503-593 77-156 (210)
94 2yxl_A PH0851 protein, 450AA l 95.8 0.017 5.9E-07 62.2 8.3 87 503-595 259-345 (450)
95 2crn_A Ubash3A protein; compac 95.8 0.0079 2.7E-07 49.1 4.3 39 80-119 12-50 (64)
96 3dmg_A Probable ribosomal RNA 95.8 0.016 5.4E-07 61.5 7.8 77 503-591 233-309 (381)
97 3gru_A Dimethyladenosine trans 95.8 0.0094 3.2E-07 61.4 5.7 97 480-591 27-125 (295)
98 2pbf_A Protein-L-isoaspartate 95.7 0.027 9.1E-07 53.6 8.4 97 493-593 70-175 (227)
99 3k0b_A Predicted N6-adenine-sp 95.7 0.017 5.7E-07 61.7 7.6 79 503-590 201-317 (393)
100 2f8l_A Hypothetical protein LM 95.7 0.0092 3.1E-07 61.5 5.5 80 503-592 130-213 (344)
101 3tqs_A Ribosomal RNA small sub 95.7 0.0099 3.4E-07 59.8 5.5 99 479-589 5-105 (255)
102 3eey_A Putative rRNA methylase 95.7 0.011 3.7E-07 55.0 5.3 82 501-590 20-103 (197)
103 2nxc_A L11 mtase, ribosomal pr 95.6 0.013 4.5E-07 57.9 6.0 75 502-589 119-193 (254)
104 3fut_A Dimethyladenosine trans 95.6 0.011 3.8E-07 60.2 5.5 95 480-590 24-120 (271)
105 3ldu_A Putative methylase; str 95.6 0.013 4.5E-07 62.2 6.2 78 503-589 195-310 (385)
106 2yxd_A Probable cobalt-precorr 95.6 0.024 8E-07 51.1 7.0 75 503-589 35-109 (183)
107 2cpw_A CBL-interacting protein 95.6 0.0077 2.6E-07 49.1 3.3 39 79-118 21-59 (64)
108 1z96_A DNA-damage, UBA-domain 95.6 0.015 5.2E-07 42.2 4.6 36 77-114 4-39 (40)
109 1i1n_A Protein-L-isoaspartate 95.6 0.026 8.7E-07 53.7 7.5 92 493-593 67-164 (226)
110 3e05_A Precorrin-6Y C5,15-meth 95.5 0.03 1E-06 52.5 7.8 80 503-591 40-119 (204)
111 3m70_A Tellurite resistance pr 95.5 0.027 9.2E-07 55.6 7.8 76 503-591 120-195 (286)
112 3q87_B N6 adenine specific DNA 95.5 0.01 3.5E-07 54.9 4.4 69 504-594 24-92 (170)
113 2knz_A Ubiquilin-4; cytoplasm, 95.5 0.017 5.9E-07 45.3 4.8 42 75-118 9-51 (53)
114 3cgg_A SAM-dependent methyltra 95.4 0.021 7.2E-07 51.9 6.2 76 501-592 44-119 (195)
115 1wiv_A UBP14, ubiquitin-specif 95.4 0.015 5.3E-07 48.5 4.8 41 76-118 28-68 (73)
116 1sqg_A SUN protein, FMU protei 95.4 0.023 7.8E-07 60.7 7.3 85 503-595 246-330 (429)
117 3ldg_A Putative uncharacterize 95.4 0.024 8.2E-07 60.4 7.3 79 503-590 194-310 (384)
118 1oqy_A HHR23A, UV excision rep 95.4 0.024 8.3E-07 60.5 7.3 41 75-117 166-206 (368)
119 3l8d_A Methyltransferase; stru 95.3 0.021 7.1E-07 54.4 6.0 81 493-587 43-123 (242)
120 1qam_A ERMC' methyltransferase 95.3 0.032 1.1E-06 55.0 7.4 96 480-590 7-104 (244)
121 1yzh_A TRNA (guanine-N(7)-)-me 95.3 0.035 1.2E-06 52.6 7.4 82 503-591 41-122 (214)
122 2xvm_A Tellurite resistance pr 95.2 0.042 1.4E-06 50.4 7.5 74 504-589 33-106 (199)
123 3njr_A Precorrin-6Y methylase; 95.2 0.047 1.6E-06 52.1 8.0 75 503-588 55-130 (204)
124 3sm3_A SAM-dependent methyltra 95.2 0.032 1.1E-06 52.5 6.7 85 496-591 23-112 (235)
125 2ih2_A Modification methylase 95.1 0.0074 2.5E-07 63.0 2.2 96 479-595 16-113 (421)
126 2dai_A Ubadc1, ubiquitin assoc 95.1 0.027 9.1E-07 48.3 5.2 41 77-119 29-69 (83)
127 2qm3_A Predicted methyltransfe 95.0 0.041 1.4E-06 57.6 7.7 80 504-592 173-253 (373)
128 2kw5_A SLR1183 protein; struct 95.0 0.036 1.2E-06 51.5 6.5 73 502-587 29-101 (202)
129 1m6y_A S-adenosyl-methyltransf 94.9 0.042 1.4E-06 56.7 7.4 84 503-591 26-109 (301)
130 2jy5_A Ubiquilin-1; UBA, alter 94.9 0.031 1.1E-06 43.7 4.8 40 76-117 11-51 (52)
131 3g5l_A Putative S-adenosylmeth 94.9 0.035 1.2E-06 53.6 6.3 73 503-588 44-116 (253)
132 1l3i_A Precorrin-6Y methyltran 94.9 0.054 1.9E-06 49.0 7.2 80 503-593 33-113 (192)
133 3e23_A Uncharacterized protein 94.8 0.059 2E-06 50.5 7.5 70 501-588 41-110 (211)
134 1wgn_A UBAP1, ubiquitin associ 94.7 0.018 6.1E-07 47.0 3.1 40 149-190 19-58 (63)
135 3kkz_A Uncharacterized protein 94.7 0.065 2.2E-06 52.3 7.8 82 502-593 45-127 (267)
136 1vbf_A 231AA long hypothetical 94.7 0.075 2.6E-06 50.5 8.0 79 503-594 70-148 (231)
137 3f4k_A Putative methyltransfer 94.7 0.093 3.2E-06 50.4 8.8 81 502-592 45-126 (257)
138 3mb5_A SAM-dependent methyltra 94.7 0.055 1.9E-06 52.4 7.1 79 503-591 93-173 (255)
139 2oyr_A UPF0341 protein YHIQ; a 94.7 0.033 1.1E-06 56.4 5.7 42 505-549 90-131 (258)
140 3pfg_A N-methyltransferase; N, 94.7 0.028 9.5E-07 54.7 5.0 78 494-588 41-118 (263)
141 1y8c_A S-adenosylmethionine-de 94.7 0.051 1.7E-06 51.5 6.6 74 502-588 36-109 (246)
142 3dou_A Ribosomal RNA large sub 94.6 0.039 1.3E-06 52.4 5.8 77 501-591 23-102 (191)
143 3s1s_A Restriction endonucleas 94.5 0.037 1.3E-06 64.6 6.2 103 482-591 295-410 (878)
144 2dkl_A Trinucleotide repeat co 94.4 0.041 1.4E-06 47.3 4.9 41 77-119 21-61 (85)
145 3bgv_A MRNA CAP guanine-N7 met 94.4 0.049 1.7E-06 54.8 6.3 96 489-588 20-122 (313)
146 1dv0_A DNA repair protein HHR2 94.4 0.012 4E-07 45.3 1.3 38 78-117 5-42 (47)
147 1dl5_A Protein-L-isoaspartate 94.4 0.075 2.6E-06 54.1 7.7 84 503-594 75-158 (317)
148 1wzn_A SAM-dependent methyltra 94.4 0.078 2.7E-06 50.9 7.3 61 503-567 41-101 (252)
149 2cos_A Serine/threonine protei 94.4 0.042 1.4E-06 43.6 4.3 41 77-118 9-49 (54)
150 3ggd_A SAM-dependent methyltra 94.4 0.11 3.7E-06 49.9 8.2 87 499-594 52-138 (245)
151 4htf_A S-adenosylmethionine-de 94.3 0.065 2.2E-06 52.8 6.6 79 501-589 66-145 (285)
152 4dcm_A Ribosomal RNA large sub 94.3 0.051 1.7E-06 57.4 6.2 78 504-591 223-303 (375)
153 3duw_A OMT, O-methyltransferas 94.2 0.09 3.1E-06 49.8 7.3 84 503-593 58-146 (223)
154 3dh0_A SAM dependent methyltra 94.2 0.083 2.8E-06 49.5 6.9 79 502-588 36-114 (219)
155 3vc1_A Geranyl diphosphate 2-C 94.2 0.079 2.7E-06 53.3 7.2 85 491-587 106-192 (312)
156 3ou2_A SAM-dependent methyltra 94.2 0.067 2.3E-06 49.8 6.2 81 490-587 34-114 (218)
157 2r6z_A UPF0341 protein in RSP 94.2 0.038 1.3E-06 55.5 4.8 81 503-590 83-171 (258)
158 2ekk_A UBA domain from E3 ubiq 94.2 0.028 9.5E-07 42.8 2.9 35 151-188 11-45 (47)
159 1o9g_A RRNA methyltransferase; 94.1 0.033 1.1E-06 54.2 4.2 46 503-548 51-97 (250)
160 1ify_A HHR23A, UV excision rep 94.1 0.042 1.4E-06 42.4 3.9 37 150-188 9-45 (49)
161 4azs_A Methyltransferase WBDD; 94.0 0.033 1.1E-06 61.8 4.2 76 503-587 66-141 (569)
162 3lcc_A Putative methyl chlorid 94.0 0.059 2E-06 51.5 5.5 77 505-593 68-145 (235)
163 1g8a_A Fibrillarin-like PRE-rR 94.0 0.15 5.2E-06 48.4 8.3 79 503-589 73-152 (227)
164 1o54_A SAM-dependent O-methylt 93.9 0.089 3.1E-06 52.0 6.9 79 503-591 112-192 (277)
165 2zig_A TTHA0409, putative modi 93.9 0.052 1.8E-06 55.1 5.3 45 503-550 235-279 (297)
166 3kr9_A SAM-dependent methyltra 93.9 0.12 4.2E-06 51.3 7.8 53 498-551 10-62 (225)
167 2g3q_A Protein YBL047C; endocy 93.9 0.053 1.8E-06 40.3 3.9 35 151-187 6-40 (43)
168 1pjz_A Thiopurine S-methyltran 93.9 0.11 3.7E-06 49.3 7.0 75 502-586 21-107 (203)
169 2yqz_A Hypothetical protein TT 93.8 0.11 3.6E-06 50.0 7.0 77 501-589 37-113 (263)
170 2yvl_A TRMI protein, hypotheti 93.8 0.13 4.4E-06 49.2 7.6 76 503-589 91-167 (248)
171 2okc_A Type I restriction enzy 93.8 0.071 2.4E-06 57.1 6.4 83 503-594 171-267 (445)
172 3bzb_A Uncharacterized protein 93.8 0.17 5.8E-06 50.7 8.7 44 503-548 79-123 (281)
173 3mgg_A Methyltransferase; NYSG 93.8 0.13 4.5E-06 50.1 7.8 82 501-591 35-116 (276)
174 1jsx_A Glucose-inhibited divis 93.8 0.092 3.1E-06 48.9 6.3 73 504-586 66-138 (207)
175 1xxl_A YCGJ protein; structura 93.7 0.1 3.6E-06 50.2 6.8 77 503-590 21-97 (239)
176 2ar0_A M.ecoki, type I restric 93.7 0.14 4.8E-06 56.8 8.6 106 480-594 147-275 (541)
177 2dak_A Ubiquitin carboxyl-term 93.7 0.051 1.8E-06 43.9 3.7 38 151-190 11-48 (63)
178 3ftd_A Dimethyladenosine trans 93.6 0.03 1E-06 56.0 2.8 98 479-591 7-106 (249)
179 1yb2_A Hypothetical protein TA 93.6 0.12 4.2E-06 51.1 7.2 76 502-589 109-188 (275)
180 1xdz_A Methyltransferase GIDB; 93.6 0.067 2.3E-06 51.8 5.1 81 502-588 69-149 (240)
181 2p7i_A Hypothetical protein; p 93.6 0.08 2.7E-06 49.9 5.5 68 491-566 31-98 (250)
182 2pwy_A TRNA (adenine-N(1)-)-me 93.5 0.15 5.2E-06 49.0 7.6 80 503-591 96-177 (258)
183 3jwh_A HEN1; methyltransferase 93.5 0.19 6.7E-06 47.2 8.1 78 503-589 29-111 (217)
184 1mjf_A Spermidine synthase; sp 93.5 0.052 1.8E-06 54.6 4.4 78 502-590 74-162 (281)
185 3h2b_A SAM-dependent methyltra 93.5 0.13 4.3E-06 47.8 6.7 69 504-588 42-110 (203)
186 3hm2_A Precorrin-6Y C5,15-meth 93.5 0.14 4.7E-06 46.1 6.8 82 503-592 25-106 (178)
187 3dtn_A Putative methyltransfer 93.4 0.11 3.6E-06 49.5 6.2 78 502-593 43-122 (234)
188 2ex4_A Adrenal gland protein A 93.4 0.073 2.5E-06 51.1 5.1 75 503-587 79-153 (241)
189 3ocj_A Putative exported prote 93.3 0.13 4.5E-06 51.5 7.0 79 500-587 115-194 (305)
190 1vg5_A RSGI RUH-014, rhomboid 93.3 0.076 2.6E-06 44.5 4.3 39 150-190 30-68 (73)
191 1vl5_A Unknown conserved prote 93.3 0.15 5.1E-06 49.4 7.1 93 486-591 22-114 (260)
192 2yxe_A Protein-L-isoaspartate 93.3 0.18 6E-06 47.4 7.3 83 503-593 77-159 (215)
193 2qfm_A Spermine synthase; sper 93.2 0.11 3.9E-06 55.3 6.7 86 502-593 187-280 (364)
194 1wji_A Tudor domain containing 93.2 0.078 2.7E-06 43.1 4.2 41 151-193 11-51 (63)
195 3tr6_A O-methyltransferase; ce 93.2 0.18 6.3E-06 47.6 7.4 81 504-591 65-151 (225)
196 3dxy_A TRNA (guanine-N(7)-)-me 93.2 0.11 3.7E-06 50.4 5.9 84 503-592 34-117 (218)
197 2ooa_A E3 ubiquitin-protein li 93.1 0.16 5.3E-06 40.1 5.5 35 79-115 13-47 (52)
198 1r18_A Protein-L-isoaspartate( 93.1 0.1 3.4E-06 49.9 5.5 94 491-593 72-176 (227)
199 3ntv_A MW1564 protein; rossman 93.1 0.17 5.9E-06 48.8 7.2 84 503-593 71-155 (232)
200 1ri5_A MRNA capping enzyme; me 93.1 0.11 3.9E-06 50.7 6.0 78 502-588 63-141 (298)
201 1inl_A Spermidine synthase; be 93.1 0.094 3.2E-06 53.3 5.5 81 502-591 89-174 (296)
202 3hnr_A Probable methyltransfer 93.1 0.18 6.3E-06 47.2 7.2 73 503-591 45-117 (220)
203 3iv6_A Putative Zn-dependent a 93.1 0.11 3.8E-06 52.6 5.9 81 502-594 44-124 (261)
204 2gb4_A Thiopurine S-methyltran 93.0 0.14 4.6E-06 51.0 6.5 74 503-586 68-158 (252)
205 2fca_A TRNA (guanine-N(7)-)-me 93.0 0.17 6E-06 48.3 7.0 82 503-591 38-119 (213)
206 3jwg_A HEN1, methyltransferase 93.0 0.22 7.5E-06 46.8 7.6 46 503-549 29-74 (219)
207 3d2l_A SAM-dependent methyltra 93.0 0.11 3.6E-06 49.4 5.4 73 501-587 31-103 (243)
208 3ofk_A Nodulation protein S; N 93.0 0.08 2.7E-06 49.7 4.5 72 503-588 51-122 (216)
209 3adn_A Spermidine synthase; am 93.0 0.14 4.7E-06 52.4 6.5 81 502-590 82-167 (294)
210 3v97_A Ribosomal RNA large sub 93.0 0.13 4.5E-06 58.8 7.0 82 503-590 190-313 (703)
211 1fbn_A MJ fibrillarin homologu 92.9 0.23 7.8E-06 47.7 7.7 77 503-588 74-151 (230)
212 3m33_A Uncharacterized protein 92.9 0.15 5.1E-06 48.8 6.4 72 502-588 47-119 (226)
213 3hem_A Cyclopropane-fatty-acyl 92.9 0.2 6.9E-06 49.9 7.6 73 502-588 71-145 (302)
214 1oqy_A HHR23A, UV excision rep 92.9 0.17 5.8E-06 54.0 7.3 41 76-118 324-364 (368)
215 3g89_A Ribosomal RNA small sub 92.9 0.11 3.9E-06 51.3 5.7 79 502-586 79-157 (249)
216 1z96_A DNA-damage, UBA-domain 92.9 0.083 2.8E-06 38.2 3.4 27 150-176 5-31 (40)
217 3lec_A NADB-rossmann superfami 92.8 0.21 7.2E-06 49.9 7.6 53 498-551 16-68 (230)
218 1iy9_A Spermidine synthase; ro 92.8 0.15 5.1E-06 51.3 6.4 80 502-590 74-158 (275)
219 3r0q_C Probable protein argini 92.8 0.19 6.7E-06 52.6 7.6 74 503-588 63-137 (376)
220 1veg_A NEDD8 ultimate buster-1 92.7 0.082 2.8E-06 45.4 3.7 39 150-190 30-68 (83)
221 1jg1_A PIMT;, protein-L-isoasp 92.6 0.26 8.9E-06 47.3 7.7 81 503-593 91-171 (235)
222 1zx0_A Guanidinoacetate N-meth 92.6 0.13 4.3E-06 49.5 5.4 75 503-586 60-134 (236)
223 2bwb_A Ubiquitin-like protein 92.6 0.16 5.3E-06 38.8 4.8 39 76-116 6-45 (46)
224 1i9g_A Hypothetical protein RV 92.6 0.22 7.4E-06 48.8 7.2 79 503-590 99-181 (280)
225 3lkd_A Type I restriction-modi 92.6 0.1 3.4E-06 58.2 5.3 84 503-591 221-308 (542)
226 1wiv_A UBP14, ubiquitin-specif 92.6 0.095 3.3E-06 43.7 3.8 39 150-190 30-68 (73)
227 3bxo_A N,N-dimethyltransferase 92.5 0.094 3.2E-06 49.6 4.4 73 496-585 33-105 (239)
228 3g2m_A PCZA361.24; SAM-depende 92.5 0.15 5.1E-06 50.8 5.9 70 505-586 84-156 (299)
229 3bkw_A MLL3908 protein, S-aden 92.5 0.23 8E-06 47.0 7.0 74 503-589 43-116 (243)
230 3gnl_A Uncharacterized protein 92.4 0.23 7.8E-06 50.1 7.2 53 498-551 16-68 (244)
231 2ipx_A RRNA 2'-O-methyltransfe 92.4 0.3 1E-05 46.7 7.7 79 503-589 77-156 (233)
232 2pjd_A Ribosomal RNA small sub 92.4 0.25 8.5E-06 50.9 7.6 76 504-591 197-272 (343)
233 2gpy_A O-methyltransferase; st 92.3 0.18 6.1E-06 48.2 6.1 85 503-593 54-139 (233)
234 2d9s_A CBL E3 ubiquitin protei 92.3 0.21 7.1E-06 39.6 5.2 36 79-116 11-46 (53)
235 4gek_A TRNA (CMO5U34)-methyltr 92.3 0.25 8.4E-06 49.4 7.2 78 501-588 68-147 (261)
236 3ujc_A Phosphoethanolamine N-m 92.2 0.19 6.5E-06 48.1 6.1 75 502-589 54-129 (266)
237 2avn_A Ubiquinone/menaquinone 92.1 0.19 6.5E-06 49.0 6.1 72 501-589 52-123 (260)
238 3uzu_A Ribosomal RNA small sub 92.1 0.13 4.6E-06 52.3 5.2 103 479-589 18-123 (279)
239 3q7e_A Protein arginine N-meth 92.1 0.27 9.1E-06 51.0 7.5 76 503-589 66-142 (349)
240 2cos_A Serine/threonine protei 92.1 0.094 3.2E-06 41.6 3.0 31 1-31 19-49 (54)
241 3tfw_A Putative O-methyltransf 92.1 0.28 9.6E-06 48.0 7.2 83 503-593 63-149 (248)
242 2avd_A Catechol-O-methyltransf 92.0 0.34 1.2E-05 45.9 7.6 85 503-591 69-156 (229)
243 2y1w_A Histone-arginine methyl 92.0 0.24 8.4E-06 51.2 7.0 76 503-590 50-126 (348)
244 2dah_A Ubiquilin-3; UBA domain 91.9 0.22 7.4E-06 39.3 5.0 40 77-118 9-49 (54)
245 1wr1_B Ubiquitin-like protein 91.9 0.21 7.3E-06 40.0 5.0 41 75-117 15-56 (58)
246 1xtp_A LMAJ004091AAA; SGPP, st 91.9 0.17 5.8E-06 48.4 5.3 74 503-588 93-166 (254)
247 3u81_A Catechol O-methyltransf 91.7 0.14 4.8E-06 48.8 4.4 83 504-593 59-147 (221)
248 2gs9_A Hypothetical protein TT 91.6 0.29 1E-05 45.6 6.6 75 497-589 30-104 (211)
249 1ej0_A FTSJ; methyltransferase 91.6 0.15 5.3E-06 44.9 4.3 80 502-594 21-102 (180)
250 2fyt_A Protein arginine N-meth 91.6 0.33 1.1E-05 50.2 7.4 75 503-588 64-139 (340)
251 1dv0_A DNA repair protein HHR2 91.5 0.095 3.2E-06 40.2 2.5 37 150-188 5-41 (47)
252 2fk8_A Methoxy mycolic acid sy 91.5 0.38 1.3E-05 48.2 7.6 72 503-588 90-163 (318)
253 3dlc_A Putative S-adenosyl-L-m 91.5 0.44 1.5E-05 44.0 7.5 75 506-591 46-122 (219)
254 1vej_A Riken cDNA 4931431F19; 91.4 0.37 1.3E-05 40.5 6.2 42 75-118 27-69 (74)
255 3g5t_A Trans-aconitate 3-methy 91.4 0.39 1.3E-05 47.7 7.6 85 503-589 36-122 (299)
256 1g60_A Adenine-specific methyl 91.3 0.17 5.7E-06 50.4 4.7 44 503-549 212-255 (260)
257 1kpg_A CFA synthase;, cyclopro 91.2 0.45 1.5E-05 46.7 7.7 72 502-587 63-136 (287)
258 1g6q_1 HnRNP arginine N-methyl 91.1 0.41 1.4E-05 49.1 7.5 76 503-589 38-114 (328)
259 3khk_A Type I restriction-modi 91.0 0.18 6.1E-06 56.1 5.1 80 505-591 246-340 (544)
260 3cc8_A Putative methyltransfer 91.0 0.32 1.1E-05 45.3 6.0 42 502-546 31-72 (230)
261 3g07_A 7SK snRNA methylphospha 90.9 0.42 1.4E-05 47.9 7.3 52 493-547 36-89 (292)
262 2p8j_A S-adenosylmethionine-de 90.9 0.61 2.1E-05 43.1 7.9 74 503-588 23-97 (209)
263 1yub_A Ermam, rRNA methyltrans 90.7 0.025 8.5E-07 55.4 -1.9 77 503-592 29-105 (245)
264 1nkv_A Hypothetical protein YJ 90.6 0.48 1.6E-05 45.4 7.1 72 503-586 36-109 (256)
265 3ihp_A Ubiquitin carboxyl-term 90.4 0.89 3.1E-05 53.2 10.4 99 1-119 662-760 (854)
266 3gu3_A Methyltransferase; alph 90.4 0.29 9.9E-06 48.5 5.4 75 502-589 21-98 (284)
267 2cpw_A CBL-interacting protein 90.3 0.21 7.3E-06 40.5 3.6 39 151-190 21-59 (64)
268 4hc4_A Protein arginine N-meth 90.3 0.35 1.2E-05 51.5 6.3 71 504-586 84-155 (376)
269 2o07_A Spermidine synthase; st 90.2 0.28 9.5E-06 50.2 5.3 81 502-590 94-178 (304)
270 3dr5_A Putative O-methyltransf 90.2 0.24 8.3E-06 48.0 4.6 82 504-592 57-141 (221)
271 3b3j_A Histone-arginine methyl 90.2 0.39 1.3E-05 52.4 6.7 75 503-589 158-233 (480)
272 2b25_A Hypothetical protein; s 90.1 0.49 1.7E-05 48.2 7.0 83 503-592 105-199 (336)
273 2p35_A Trans-aconitate 2-methy 90.0 0.5 1.7E-05 45.2 6.7 74 503-593 33-108 (259)
274 3e8s_A Putative SAM dependent 89.9 0.67 2.3E-05 43.0 7.2 74 504-591 53-127 (227)
275 2i7c_A Spermidine synthase; tr 89.7 0.32 1.1E-05 49.0 5.1 81 502-590 77-161 (283)
276 1whc_A RSGI RUH-027, UBA/UBX 3 89.7 0.36 1.2E-05 39.2 4.4 31 1-31 19-49 (64)
277 4fzv_A Putative methyltransfer 89.4 0.86 2.9E-05 48.3 8.4 87 503-593 148-236 (359)
278 4hg2_A Methyltransferase type 89.4 0.19 6.6E-06 50.2 3.3 76 495-587 31-106 (257)
279 2juj_A E3 ubiquitin-protein li 89.4 0.55 1.9E-05 37.4 5.1 39 76-116 6-44 (56)
280 3dli_A Methyltransferase; PSI- 89.1 0.76 2.6E-05 43.9 7.1 44 499-545 37-80 (240)
281 3thr_A Glycine N-methyltransfe 89.1 0.84 2.9E-05 44.8 7.6 76 503-586 57-136 (293)
282 2oo9_A E3 ubiquitin-protein li 89.1 0.73 2.5E-05 35.4 5.4 37 77-115 4-40 (46)
283 2nyu_A Putative ribosomal RNA 89.0 0.46 1.6E-05 43.6 5.3 77 502-590 21-107 (196)
284 2knz_A Ubiquilin-4; cytoplasm, 89.0 0.38 1.3E-05 37.6 4.0 39 150-190 12-51 (53)
285 2hnk_A SAM-dependent O-methylt 89.0 0.67 2.3E-05 44.6 6.7 49 503-551 60-108 (239)
286 1uir_A Polyamine aminopropyltr 88.8 0.45 1.5E-05 48.7 5.6 81 502-590 76-161 (314)
287 2o57_A Putative sarcosine dime 88.8 0.77 2.6E-05 45.2 7.1 75 502-587 81-157 (297)
288 2crn_A Ubash3A protein; compac 88.8 0.45 1.5E-05 38.7 4.4 31 1-31 19-49 (64)
289 2pt6_A Spermidine synthase; tr 88.7 0.37 1.3E-05 49.6 5.0 80 502-589 115-198 (321)
290 2oo3_A Protein involved in cat 88.6 0.19 6.5E-06 51.9 2.7 90 490-590 80-169 (283)
291 2dai_A Ubadc1, ubiquitin assoc 88.6 0.36 1.2E-05 41.3 3.9 39 150-190 30-68 (83)
292 3bus_A REBM, methyltransferase 88.5 1.2 4.1E-05 43.1 8.2 80 503-593 61-142 (273)
293 1qyr_A KSGA, high level kasuga 88.4 0.61 2.1E-05 46.6 6.1 82 503-592 21-102 (252)
294 1p91_A Ribosomal RNA large sub 88.4 0.58 2E-05 45.4 5.8 71 502-588 84-156 (269)
295 1wj7_A Hypothetical protein (R 88.3 0.54 1.9E-05 42.0 5.0 40 77-118 39-79 (104)
296 1ixs_A Holliday junction DNA h 88.3 0.77 2.6E-05 37.1 5.5 40 76-115 16-58 (62)
297 3c3y_A Pfomt, O-methyltransfer 88.3 0.81 2.8E-05 44.5 6.8 83 503-592 70-159 (237)
298 3k9o_A Ubiquitin-conjugating e 88.3 0.52 1.8E-05 45.8 5.3 38 77-116 163-200 (201)
299 3c3p_A Methyltransferase; NP_9 88.2 0.77 2.6E-05 43.1 6.4 78 504-592 57-138 (210)
300 3bwc_A Spermidine synthase; SA 88.1 0.39 1.3E-05 48.9 4.5 82 502-590 94-179 (304)
301 2vdw_A Vaccinia virus capping 88.1 1.2 4.2E-05 45.2 8.3 47 502-550 47-93 (302)
302 2b2c_A Spermidine synthase; be 87.9 0.5 1.7E-05 48.7 5.3 80 502-589 107-190 (314)
303 4fp9_B Mterf domain-containing 87.5 1.3 4.5E-05 46.5 8.3 86 79-173 80-173 (335)
304 3ccf_A Cyclopropane-fatty-acyl 87.5 0.97 3.3E-05 44.3 6.9 71 503-590 57-127 (279)
305 3i9f_A Putative type 11 methyl 87.5 1.2 4.2E-05 39.8 7.0 43 502-547 16-58 (170)
306 3ihp_A Ubiquitin carboxyl-term 87.4 1.5 5E-05 51.4 9.4 104 77-188 652-757 (854)
307 2plw_A Ribosomal RNA methyltra 87.1 1.1 3.9E-05 41.2 6.8 55 502-567 21-76 (201)
308 1sui_A Caffeoyl-COA O-methyltr 87.0 0.56 1.9E-05 46.1 4.8 84 503-593 79-169 (247)
309 2dna_A Unnamed protein product 86.6 0.74 2.5E-05 38.0 4.5 43 75-119 17-60 (67)
310 2i62_A Nicotinamide N-methyltr 86.3 0.54 1.9E-05 45.0 4.2 45 503-549 56-100 (265)
311 2dkl_A Trinucleotide repeat co 86.3 0.56 1.9E-05 40.3 3.8 39 150-190 22-60 (85)
312 2jy5_A Ubiquilin-1; UBA, alter 86.1 0.71 2.4E-05 35.9 4.0 36 151-188 14-50 (52)
313 3cbg_A O-methyltransferase; cy 86.1 1.4 4.8E-05 42.4 7.1 84 504-591 73-159 (232)
314 3uwp_A Histone-lysine N-methyl 85.8 1.5 5.1E-05 47.9 7.7 80 503-590 173-262 (438)
315 3fzg_A 16S rRNA methylase; met 85.7 0.69 2.4E-05 45.6 4.6 49 502-551 48-96 (200)
316 1xj5_A Spermidine synthase 1; 85.6 0.54 1.9E-05 48.9 4.1 81 502-589 119-203 (334)
317 2cmg_A Spermidine synthase; tr 85.5 0.5 1.7E-05 47.4 3.6 73 502-588 71-147 (262)
318 3mq2_A 16S rRNA methyltransfer 85.5 0.56 1.9E-05 44.1 3.8 40 503-543 27-66 (218)
319 3gjy_A Spermidine synthase; AP 85.3 0.59 2E-05 48.7 4.2 76 504-588 90-167 (317)
320 3htx_A HEN1; HEN1, small RNA m 85.0 0.8 2.8E-05 54.0 5.4 45 503-547 721-765 (950)
321 3r3h_A O-methyltransferase, SA 84.8 0.34 1.2E-05 47.6 1.9 85 504-592 61-148 (242)
322 3fpf_A Mtnas, putative unchara 84.2 1.9 6.4E-05 44.7 7.3 72 502-586 121-194 (298)
323 2dag_A Ubiquitin carboxyl-term 84.2 0.85 2.9E-05 38.0 3.8 31 1-31 19-49 (74)
324 1vlm_A SAM-dependent methyltra 84.0 0.86 2.9E-05 43.0 4.3 70 496-588 41-110 (219)
325 2cwb_A Chimera of immunoglobul 83.1 1.8 6.2E-05 38.8 5.7 39 77-117 66-105 (108)
326 2ooa_A E3 ubiquitin-protein li 83.0 0.98 3.4E-05 35.6 3.4 30 150-179 12-41 (52)
327 3id6_C Fibrillarin-like rRNA/T 82.5 2.6 9.1E-05 41.7 7.4 80 502-589 75-155 (232)
328 3ege_A Putative methyltransfer 82.5 1 3.5E-05 43.8 4.4 72 502-590 33-104 (261)
329 1vek_A UBP14, ubiquitin-specif 82.1 1.1 3.8E-05 38.2 3.8 31 1-31 39-69 (84)
330 2dah_A Ubiquilin-3; UBA domain 80.7 1.2 4.1E-05 35.1 3.2 38 150-189 10-48 (54)
331 3ckk_A TRNA (guanine-N(7)-)-me 80.5 2.1 7.1E-05 41.8 5.7 85 503-593 46-136 (235)
332 3hp7_A Hemolysin, putative; st 80.4 0.91 3.1E-05 46.8 3.2 38 503-542 85-122 (291)
333 3orh_A Guanidinoacetate N-meth 80.3 1.2 4.1E-05 43.2 3.9 76 502-586 59-134 (236)
334 4fsd_A Arsenic methyltransfera 80.0 1.7 5.7E-05 45.4 5.2 83 503-588 83-174 (383)
335 3ufb_A Type I restriction-modi 79.3 1.8 6.3E-05 47.8 5.5 83 504-590 218-312 (530)
336 1wj7_A Hypothetical protein (R 78.8 1.3 4.4E-05 39.6 3.2 39 150-190 40-79 (104)
337 1qzz_A RDMB, aclacinomycin-10- 78.8 5.8 0.0002 40.4 8.7 80 502-593 181-261 (374)
338 2d9s_A CBL E3 ubiquitin protei 78.5 1.5 5.3E-05 34.7 3.2 28 150-177 10-37 (53)
339 2cp8_A NEXT to BRCA1 gene 1 pr 77.9 3.1 0.00011 33.0 4.8 39 78-118 10-49 (54)
340 1boo_A Protein (N-4 cytosine-s 77.7 1.1 3.8E-05 46.1 2.9 43 503-548 252-294 (323)
341 2r3s_A Uncharacterized protein 77.6 3.2 0.00011 41.5 6.2 79 502-593 164-245 (335)
342 2a14_A Indolethylamine N-methy 77.3 0.67 2.3E-05 45.5 1.1 45 503-549 55-99 (263)
343 1ixs_A Holliday junction DNA h 77.1 2.2 7.6E-05 34.4 3.9 35 151-185 19-56 (62)
344 1u2z_A Histone-lysine N-methyl 77.1 5.5 0.00019 43.1 8.2 41 502-544 241-282 (433)
345 2zfu_A Nucleomethylin, cerebra 76.0 2.8 9.6E-05 39.0 4.9 74 485-588 50-123 (215)
346 4df3_A Fibrillarin-like rRNA/T 75.7 9.1 0.00031 38.0 8.8 81 502-590 76-157 (233)
347 1nt2_A Fibrillarin-like PRE-rR 75.5 6 0.0002 37.7 7.2 78 502-587 56-133 (210)
348 1tte_A Ubiquitin-conjugating e 75.2 2.3 8E-05 42.0 4.3 29 77-105 169-197 (215)
349 1tw3_A COMT, carminomycin 4-O- 75.1 7.6 0.00026 39.4 8.3 80 502-593 182-262 (360)
350 3e46_A Ubiquitin-conjugating e 75.1 3.3 0.00011 41.9 5.5 39 76-116 214-252 (253)
351 1x19_A CRTF-related protein; m 73.6 7.7 0.00026 39.6 7.9 72 490-565 179-251 (359)
352 3opn_A Putative hemolysin; str 73.5 1.9 6.5E-05 42.2 3.2 40 502-543 36-75 (232)
353 3bkx_A SAM-dependent methyltra 73.3 3.5 0.00012 39.8 5.0 82 503-591 43-133 (275)
354 2juj_A E3 ubiquitin-protein li 72.1 2.8 9.7E-05 33.4 3.2 30 150-179 8-37 (56)
355 1i4w_A Mitochondrial replicati 71.9 4.6 0.00016 42.7 5.8 85 479-567 28-118 (353)
356 2oo9_A E3 ubiquitin-protein li 69.5 3.9 0.00013 31.4 3.4 26 151-176 6-31 (46)
357 2bwb_A Ubiquitin-like protein 69.5 4.8 0.00016 30.5 3.9 28 1-29 17-45 (46)
358 4e2x_A TCAB9; kijanose, tetron 69.4 9.2 0.00031 39.8 7.5 40 503-545 107-146 (416)
359 2qsf_X RAD23, UV excision repa 68.0 5.5 0.00019 38.3 4.9 39 76-116 129-167 (171)
360 2cp8_A NEXT to BRCA1 gene 1 pr 67.7 3.2 0.00011 32.9 2.7 30 1-31 19-49 (54)
361 1wg8_A Predicted S-adenosylmet 67.2 12 0.00042 38.6 7.7 76 504-591 23-100 (285)
362 1eg2_A Modification methylase 66.8 3.9 0.00013 42.2 4.0 43 503-548 242-287 (319)
363 2p41_A Type II methyltransfera 66.4 1.9 6.5E-05 44.1 1.5 32 501-536 80-111 (305)
364 3k9o_A Ubiquitin-conjugating e 66.3 3.6 0.00012 39.8 3.4 27 150-176 164-190 (201)
365 3sso_A Methyltransferase; macr 66.2 4.5 0.00015 43.9 4.4 74 502-586 215-294 (419)
366 4fp9_B Mterf domain-containing 66.0 10 0.00034 39.8 6.9 87 77-174 46-138 (335)
367 1wr1_B Ubiquitin-like protein 65.0 5.6 0.00019 31.7 3.6 29 1-30 27-56 (58)
368 1cuk_A RUVA protein; DNA repai 64.1 7.8 0.00027 37.9 5.3 40 76-115 159-199 (203)
369 3p2e_A 16S rRNA methylase; met 64.0 8.8 0.0003 37.0 5.6 64 503-567 24-91 (225)
370 2xyq_A Putative 2'-O-methyl tr 62.5 18 0.00063 36.9 7.9 65 502-590 62-133 (290)
371 1vej_A Riken cDNA 4931431F19; 59.8 6.8 0.00023 32.8 3.4 29 1-30 39-68 (74)
372 2w84_A Peroxisomal membrane pr 59.0 13 0.00044 31.0 4.8 32 75-106 33-64 (70)
373 3d5l_A Regulatory protein RECX 58.0 44 0.0015 32.7 9.5 81 79-179 131-212 (221)
374 4auk_A Ribosomal RNA large sub 58.0 9.2 0.00031 40.9 4.9 74 501-592 209-282 (375)
375 2ztd_A Holliday junction ATP-d 57.4 14 0.00048 36.5 5.8 40 77-116 164-206 (212)
376 2dna_A Unnamed protein product 57.3 8.1 0.00028 31.9 3.4 38 151-190 21-59 (67)
377 2qsf_X RAD23, UV excision repa 56.6 5.3 0.00018 38.4 2.5 31 149-179 130-160 (171)
378 1tte_A Ubiquitin-conjugating e 55.7 6.7 0.00023 38.7 3.1 28 150-177 170-197 (215)
379 2kna_A Baculoviral IAP repeat- 55.0 16 0.00055 32.1 5.2 53 66-120 18-75 (104)
380 2dpm_A M.dpnii 1, protein (ade 54.5 7.2 0.00025 39.7 3.3 46 496-546 27-73 (284)
381 3ua3_A Protein arginine N-meth 54.5 5.5 0.00019 46.1 2.6 88 496-588 399-503 (745)
382 3dfg_A Xcrecx, regulatory prot 52.0 17 0.00059 33.9 5.2 67 2-103 95-161 (162)
383 2g1p_A DNA adenine methylase; 52.0 6.4 0.00022 39.9 2.4 47 495-546 19-65 (278)
384 2oxt_A Nucleoside-2'-O-methylt 51.8 5 0.00017 40.2 1.6 35 501-539 72-106 (265)
385 2wa2_A Non-structural protein 50.4 5.6 0.00019 40.1 1.7 35 501-539 80-114 (276)
386 2cwb_A Chimera of immunoglobul 50.1 11 0.00039 33.7 3.4 37 150-188 67-104 (108)
387 3frh_A 16S rRNA methylase; met 47.5 23 0.00077 36.1 5.5 44 502-549 104-147 (253)
388 3lcv_B Sisomicin-gentamicin re 47.4 14 0.00049 38.1 4.1 48 502-550 131-178 (281)
389 3e3v_A Regulatory protein RECX 47.0 1.3E+02 0.0045 28.2 10.6 77 79-175 88-165 (177)
390 3e46_A Ubiquitin-conjugating e 45.9 13 0.00043 37.7 3.4 27 150-176 216-242 (253)
391 1yf3_A DNA adenine methylase; 45.6 6.2 0.00021 39.5 1.1 48 494-547 15-62 (259)
392 4gqb_A Protein arginine N-meth 45.2 11 0.00038 42.9 3.2 70 504-585 358-433 (637)
393 3dfg_A Xcrecx, regulatory prot 45.0 89 0.003 29.0 8.9 74 76-174 33-109 (162)
394 3cvo_A Methyltransferase-like 44.6 50 0.0017 32.1 7.4 59 503-566 30-92 (202)
395 1cuk_A RUVA protein; DNA repai 44.5 15 0.00051 35.9 3.6 34 151-184 162-196 (203)
396 2w84_A Peroxisomal membrane pr 44.1 20 0.00069 29.9 3.7 28 151-178 37-64 (70)
397 2pwq_A Ubiquitin conjugating e 44.0 4.8 0.00016 39.8 0.0 37 78-116 178-214 (216)
398 3c6k_A Spermine synthase; sper 43.6 48 0.0016 35.5 7.6 85 504-594 206-298 (381)
399 3m66_A Mterf3, mterf domain-co 43.4 53 0.0018 32.4 7.5 81 78-173 77-172 (270)
400 3ff5_A PEX14P, peroxisomal bio 42.8 22 0.00074 28.2 3.6 27 75-101 28-54 (54)
401 4fs3_A Enoyl-[acyl-carrier-pro 41.9 34 0.0012 33.3 5.8 66 517-587 24-93 (256)
402 3mva_O Transcription terminati 41.8 30 0.001 35.6 5.6 16 158-173 249-264 (343)
403 2ip2_A Probable phenazine-spec 40.0 26 0.0009 35.0 4.7 77 505-593 169-246 (334)
404 2g72_A Phenylethanolamine N-me 40.0 14 0.00046 36.3 2.6 44 503-548 71-114 (289)
405 3mcz_A O-methyltransferase; ad 37.4 43 0.0015 33.6 5.9 82 503-593 179-261 (352)
406 1ixr_A Holliday junction DNA h 36.8 7.3 0.00025 37.8 0.0 34 78-111 147-183 (191)
407 2ztd_A Holliday junction ATP-d 35.9 27 0.00092 34.5 3.9 35 151-185 166-203 (212)
408 2bm8_A Cephalosporin hydroxyla 32.2 25 0.00086 34.0 3.0 73 504-586 82-158 (236)
409 3e3v_A Regulatory protein RECX 32.1 34 0.0011 32.4 3.8 29 77-105 139-167 (177)
410 4fn4_A Short chain dehydrogena 31.6 48 0.0017 33.0 5.0 63 518-586 24-90 (254)
411 3ged_A Short-chain dehydrogena 31.0 41 0.0014 33.4 4.3 60 518-587 19-82 (247)
412 3d5l_A Regulatory protein RECX 30.9 26 0.00091 34.2 2.9 31 76-106 181-211 (221)
413 2kna_A Baculoviral IAP repeat- 30.7 51 0.0017 28.9 4.4 31 1-31 37-73 (104)
414 3ff5_A PEX14P, peroxisomal bio 30.2 36 0.0012 27.0 3.0 24 150-173 31-54 (54)
415 3c1d_A Protein ORAA, regulator 29.5 60 0.0021 29.9 5.0 26 76-101 132-157 (159)
416 1xu9_A Corticosteroid 11-beta- 28.7 1.4E+02 0.0047 29.0 7.7 97 483-585 3-111 (286)
417 2aot_A HMT, histamine N-methyl 28.4 1.2E+02 0.004 29.7 7.2 46 503-548 52-102 (292)
418 2k4m_A TR8_protein, UPF0146 pr 27.8 39 0.0013 32.0 3.3 40 500-542 32-73 (153)
419 3gwz_A MMCR; methyltransferase 27.8 1E+02 0.0035 31.5 6.9 82 501-594 200-282 (369)
420 3m66_A Mterf3, mterf domain-co 27.3 46 0.0016 32.8 4.0 41 76-116 4-50 (270)
421 3i53_A O-methyltransferase; CO 24.6 2E+02 0.0068 28.6 8.2 47 502-550 168-214 (332)
422 4g81_D Putative hexonate dehyd 23.9 82 0.0028 31.3 5.1 64 518-587 26-93 (255)
423 1ixr_A Holliday junction DNA h 22.7 18 0.00062 35.0 0.0 33 151-183 148-183 (191)
424 4b79_A PA4098, probable short- 22.4 45 0.0015 33.1 2.8 57 518-586 28-84 (242)
425 3dp7_A SAM-dependent methyltra 22.3 1.8E+02 0.0062 29.6 7.5 81 503-593 179-261 (363)
426 3o4f_A Spermidine synthase; am 22.2 1.2E+02 0.0041 31.1 6.1 80 502-589 82-166 (294)
427 3oig_A Enoyl-[acyl-carrier-pro 20.8 1.4E+02 0.0047 28.5 5.9 67 517-588 25-95 (266)
No 1
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=99.92 E-value=2.6e-26 Score=235.60 Aligned_cols=105 Identities=17% Similarity=0.347 Sum_probs=93.2
Q ss_pred CcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 006634 505 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV 584 (637)
Q Consensus 505 l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLV 584 (637)
|+||||||||||+++||++||| ++++++|+|+.|++||+.+|. ..++.+||++|+.+++ +.+|||
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~--~~v~a~e~d~~a~~ty~~N~~------~~~~~~DI~~i~~~~~-------~~~D~l 65 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGF--RIICANEYDKSIWKTYESNHS------AKLIKGDISKISSDEF-------PKCDGI 65 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTC--EEEEEEECCTTTHHHHHHHCC------SEEEESCGGGCCGGGS-------CCCSEE
T ss_pred CeEEEeCcCccHHHHHHHHCCC--EEEEEEeCCHHHHHHHHHHCC------CCcccCChhhCCHhhC-------CcccEE
Confidence 6899999999999999999998 579999999999999998653 2366899999998765 479999
Q ss_pred EEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006634 585 ICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 636 (637)
Q Consensus 585 IGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK~~~ 636 (637)
+||||||+||.+ |+++|++|+|+.||++|+|+|+++||.+
T Consensus 66 ~ggpPCQ~fS~a------------g~~~g~~d~R~~L~~~~~r~i~~~~Pk~ 105 (331)
T 3ubt_Y 66 IGGPPSQSWSEG------------GSLRGIDDPRGKLFYEYIRILKQKKPIF 105 (331)
T ss_dssp ECCCCGGGTEET------------TEECCTTCGGGHHHHHHHHHHHHHCCSE
T ss_pred EecCCCCCcCCC------------CCccCCCCchhHHHHHHHHHHhccCCeE
Confidence 999999999964 5577899999999999999999999864
No 2
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=99.91 E-value=1.2e-24 Score=224.95 Aligned_cols=116 Identities=22% Similarity=0.371 Sum_probs=100.9
Q ss_pred cCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 006634 500 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 579 (637)
Q Consensus 500 ~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g 579 (637)
..+.+++||||||||||+++||+++||++++++++|+|+.|+++|+.+|. +..++.+||++++.+.+.+ .+
T Consensus 12 ~~~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~-----~~~~~~~DI~~i~~~~i~~----~~ 82 (295)
T 2qrv_A 12 EKRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ-----GKIMYVGDVRSVTQKHIQE----WG 82 (295)
T ss_dssp CCCCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT-----TCEEEECCGGGCCHHHHHH----TC
T ss_pred ccCCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC-----CCceeCCChHHccHHHhcc----cC
Confidence 45678999999999999999999999987779999999999999987653 3446789999999987764 36
Q ss_pred CccEEEEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 006634 580 SIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 635 (637)
Q Consensus 580 ~~DLVIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK~~ 635 (637)
++|||+||||||+||.+|+ +|.|++|+|+.||++|+|||+++||.
T Consensus 83 ~~Dll~ggpPCQ~fS~ag~-----------~r~g~~d~r~~L~~~~~rii~~~~P~ 127 (295)
T 2qrv_A 83 PFDLVIGGSPCNDLSIVNP-----------ARKGLYEGTGRLFFEFYRLLHDARPK 127 (295)
T ss_dssp CCSEEEECCCCGGGBTTCT-----------TCCTTTSTTTTHHHHHHHHHHHHSCC
T ss_pred CcCEEEecCCCccccccCc-----------cccccccccchhHHHHHHHHHHhCcc
Confidence 8999999999999997631 36789999999999999999999986
No 3
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=99.89 E-value=1.1e-23 Score=220.94 Aligned_cols=110 Identities=14% Similarity=0.237 Sum_probs=97.1
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 583 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 583 (637)
.+++|||||||||+++||+++|+.+++++++|+|+.|+++|+.+|.. ..++.+||++++.+++.. ..+||
T Consensus 3 ~~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~-----~~~~~~DI~~~~~~~~~~-----~~~D~ 72 (333)
T 4h0n_A 3 SHKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE-----TNLLNRNIQQLTPQVIKK-----WNVDT 72 (333)
T ss_dssp CEEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----SCEECCCGGGCCHHHHHH-----TTCCE
T ss_pred CCEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC-----CceeccccccCCHHHhcc-----CCCCE
Confidence 58999999999999999999999889999999999999999987642 335679999999988764 26999
Q ss_pred EEEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhh-cc
Q 006634 584 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVR-SM 635 (637)
Q Consensus 584 VIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK-~~ 635 (637)
|+||||||+||.+ |+++|++|+|+.||++|+|+|+++| |.
T Consensus 73 l~ggpPCQ~fS~a------------g~~~~~~d~r~~L~~~~~r~i~~~~~P~ 113 (333)
T 4h0n_A 73 ILMSPPCQPFTRN------------GKYLDDNDPRTNSFLYLIGILDQLDNVD 113 (333)
T ss_dssp EEECCCCCCSEET------------TEECCTTCTTSCCHHHHHHHGGGCTTCC
T ss_pred EEecCCCcchhhh------------hhccCCcCcccccHHHHHHHHHHhcCCC
Confidence 9999999999974 4567899999999999999999997 75
No 4
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=99.89 E-value=7.5e-24 Score=221.69 Aligned_cols=117 Identities=18% Similarity=0.322 Sum_probs=98.2
Q ss_pred cccccCCCCCcccccCCCCChHHHHHHHcCCceeeE-EEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHh
Q 006634 496 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGV-ISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL 574 (637)
Q Consensus 496 vLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~v-vaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l 574 (637)
+|+++...++++|||||||||+++||+++||+++++ +++|+|+.|++||+.+|..+ ++.+||++++.++|..
T Consensus 2 ~l~~m~~~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~------~~~~DI~~~~~~~i~~- 74 (327)
T 3qv2_A 2 PLGSMQQKQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE------VQVKNLDSISIKQIES- 74 (327)
T ss_dssp ------CCCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC------CBCCCTTTCCHHHHHH-
T ss_pred CCccccCCCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC------cccCChhhcCHHHhcc-
Confidence 456677778999999999999999999999877899 99999999999999877422 5679999999988764
Q ss_pred hhccCCccEEEEcCCCCCc--CccCccCCCCCccccccCCCCCCCCcchHHHHHH-HHHHh--hcc
Q 006634 575 IHKLGSIDFVICQNSVPQI--PNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVR-VVQRV--RSM 635 (637)
Q Consensus 575 ~~~~g~~DLVIGGpPCQ~F--S~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~R-IV~~v--K~~ 635 (637)
..+|||+||||||+| |. ||+++|++|+|+.||++|+| +|+++ ||.
T Consensus 75 ----~~~Dil~ggpPCQ~fs~S~------------ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~ 124 (327)
T 3qv2_A 75 ----LNCNTWFMSPPCQPYNNSI------------MSKHKDINDPRAKSVLHLYRDILPYLINKPK 124 (327)
T ss_dssp ----TCCCEEEECCCCTTCSHHH------------HTTTCTTTCGGGHHHHHHHHTTGGGCSSCCS
T ss_pred ----CCCCEEEecCCccCccccc------------CCCCCCCccccchhHHHHHHHHHHHhccCCC
Confidence 279999999999999 75 45577899999999999999 99998 665
No 5
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=99.88 E-value=2.3e-23 Score=228.33 Aligned_cols=125 Identities=18% Similarity=0.272 Sum_probs=88.6
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhh--------H-HHh
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKK--------F-ESL 574 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~--------I-e~l 574 (637)
++++|||||||||+++||+++|+ ++|++||+|+.|++||+.+|.. .++..++.+||++++... + ..+
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG~--~~v~avE~d~~A~~ty~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i 163 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIGG--QCVFTSEWNKHAVRTYKANHYC--DPATHHFNEDIRDITLSHQEGVSDEAAAEHI 163 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTTE--EEEEEECCCHHHHHHHHHHSCC--CTTTCEEESCTHHHHCTTCTTSCHHHHHHHH
T ss_pred cceEEEecCCccHHHHHHHHCCC--EEEEEEeCCHHHHHHHHHhccc--CCCcceeccchhhhhhccccccchhhHHhhh
Confidence 58999999999999999999997 5799999999999999988732 234456679999887432 1 111
Q ss_pred hhccCCccEEEEcCCCCCcCccCccCCCCCccccccCCCCC-CCCcchHHHHHHHHHHhhccc
Q 006634 575 IHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLP-DFDFSLYYEFVRVVQRVRSMK 636 (637)
Q Consensus 575 ~~~~g~~DLVIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~-D~Rs~LF~Ey~RIV~~vK~~~ 636 (637)
....+++|||+||||||+||.+|+.. ++ ..|++.|+. |+|+.||++|+|+|+++||.+
T Consensus 164 ~~~~~~~Dvl~gGpPCQ~FS~AG~~k--~~--~~g~~~G~~~D~R~~Lf~e~~riI~~~rPk~ 222 (482)
T 3me5_A 164 RQHIPEHDVLLAGFPCQPFSLAGVSK--KN--SLGRAHGFACDTQGTLFFDVVRIIDARRPAM 222 (482)
T ss_dssp HHHSCCCSEEEEECCCCCC----------------------CTTTTSHHHHHHHHHHHHCCSE
T ss_pred hhcCCCCCEEEecCCCcchhhhCccc--cc--ccccccccccCccccHHHHHHHHHHHcCCcE
Confidence 12457899999999999999886421 11 123455775 899999999999999999864
No 6
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=99.87 E-value=1.4e-22 Score=211.65 Aligned_cols=106 Identities=19% Similarity=0.323 Sum_probs=92.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.++++||||||+||+++||+++|+ +++++||+|+.|+++|+.+|... . .+||++++.+.+ +.+|
T Consensus 10 ~~~~~~dLFaG~Gg~~~g~~~aG~--~~v~~~e~d~~a~~t~~~N~~~~------~-~~Di~~~~~~~~-------~~~D 73 (327)
T 2c7p_A 10 TGLRFIDLFAGLGGFRLALESCGA--ECVYSNEWDKYAQEVYEMNFGEK------P-EGDITQVNEKTI-------PDHD 73 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTC--EEEEEECCCHHHHHHHHHHHSCC------C-BSCGGGSCGGGS-------CCCS
T ss_pred CCCcEEEECCCcCHHHHHHHHCCC--eEEEEEeCCHHHHHHHHHHcCCC------C-cCCHHHcCHhhC-------CCCC
Confidence 468999999999999999999998 57999999999999999987532 1 689999987644 3699
Q ss_pred EEEEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006634 583 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 636 (637)
Q Consensus 583 LVIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK~~~ 636 (637)
||+||||||+||.+ |++.|++|+|+.||++|+|+|+++||..
T Consensus 74 ~l~~gpPCQ~fS~a------------g~~~g~~d~r~~L~~~~~r~i~~~~P~~ 115 (327)
T 2c7p_A 74 ILCAGFPCQAFSIS------------GKQKGFEDSRGTLFFDIARIVREKKPKV 115 (327)
T ss_dssp EEEEECCCTTTCTT------------SCCCGGGSTTSCHHHHHHHHHHHHCCSE
T ss_pred EEEECCCCCCcchh------------cccCCCcchhhHHHHHHHHHHHhccCcE
Confidence 99999999999975 4466888999999999999999999853
No 7
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=99.87 E-value=7.8e-23 Score=217.47 Aligned_cols=113 Identities=20% Similarity=0.306 Sum_probs=92.6
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 583 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 583 (637)
.++||||||||||+++||+++|+ +++++||+|+.|+++|+.+|. ...++.+||++++.+++.......+.+||
T Consensus 2 ~~~vidLFsG~GGlslG~~~aG~--~~v~avE~d~~a~~t~~~N~~-----~~~~~~~DI~~~~~~~~~~~~~~~~~~D~ 74 (376)
T 3g7u_A 2 SLNVIDLFSGVGGLSLGAARAGF--DVKMAVEIDQHAINTHAINFP-----RSLHVQEDVSLLNAEIIKGFFKNDMPIDG 74 (376)
T ss_dssp CCEEEEETCTTSHHHHHHHHHTC--EEEEEECSCHHHHHHHHHHCT-----TSEEECCCGGGCCHHHHHHHHCSCCCCCE
T ss_pred CCeEEEEccCcCHHHHHHHHCCC--cEEEEEeCCHHHHHHHHHhCC-----CCceEecChhhcCHHHHHhhcccCCCeeE
Confidence 48999999999999999999997 579999999999999998653 33467899999998877543223468999
Q ss_pred EEEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006634 584 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 636 (637)
Q Consensus 584 VIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK~~~ 636 (637)
|+||||||+||.+ |++ +.+|+|+.||++|+|+|+++||.+
T Consensus 75 i~ggpPCQ~fS~a------------g~~-~~~d~r~~L~~~~~~~v~~~~P~~ 114 (376)
T 3g7u_A 75 IIGGPPCQGFSSI------------GKG-NPDDSRNQLYMHFYRLVSELQPLF 114 (376)
T ss_dssp EEECCCCCTTC--------------------CHHHHHHHHHHHHHHHHHCCSE
T ss_pred EEecCCCCCcccc------------cCC-CCCCchHHHHHHHHHHHHHhCCCE
Confidence 9999999999975 334 688999999999999999999864
No 8
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=99.86 E-value=1.6e-22 Score=212.05 Aligned_cols=110 Identities=17% Similarity=0.358 Sum_probs=80.6
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 583 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 583 (637)
+++|||||||+||+++||+++|++++++++||+|+.|+++|+.+|.. ..++.+||++++.+.+... .+|+
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~-----~~~~~~Di~~~~~~~~~~~-----~~D~ 71 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH-----TQLLAKTIEGITLEEFDRL-----SFDM 71 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----SCEECSCGGGCCHHHHHHH-----CCSE
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc-----cccccCCHHHccHhHcCcC-----CcCE
Confidence 47899999999999999999998778999999999999999987643 2356899999988766532 6999
Q ss_pred EEEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhh--cc
Q 006634 584 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVR--SM 635 (637)
Q Consensus 584 VIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK--~~ 635 (637)
|+||||||+||.+ |++.|++|+|+.||++|+|+|++++ |.
T Consensus 72 l~~gpPCq~fS~a------------g~~~g~~d~r~~l~~~~~~~i~~~~~~P~ 113 (343)
T 1g55_A 72 ILMSPPCQPFTRI------------GRQGDMTDSRTNSFLHILDILPRLQKLPK 113 (343)
T ss_dssp EEECCC------------------------------CHHHHHHHHGGGCSSCCS
T ss_pred EEEcCCCcchhhc------------CCcCCccCccchHHHHHHHHHHHhcCCCC
Confidence 9999999999975 4567899999999999999999998 64
No 9
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=99.86 E-value=1.6e-22 Score=231.26 Aligned_cols=122 Identities=17% Similarity=0.170 Sum_probs=94.6
Q ss_pred CCCCcccccCCCCChHHHHHHHcCC----ceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHH----
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGI----KLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES---- 573 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi----~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~---- 573 (637)
...++|||||||||||++||++||. .+++++|||+|+.|++||+.+| +.+.+..+||.++....++.
T Consensus 210 ~k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh-----p~~~~~~~di~~i~~~~~~~~~~~ 284 (784)
T 4ft4_B 210 TRTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH-----PQTEVRNEKADEFLALLKEWAVLC 284 (784)
T ss_dssp CEEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC-----TTSEEEESCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC-----CCCceecCcHHHhhhhhhhccccc
Confidence 3569999999999999999999982 2578999999999999998754 44456678887664432221
Q ss_pred --------------------------------------------------------------------------------
Q 006634 574 -------------------------------------------------------------------------------- 573 (637)
Q Consensus 574 -------------------------------------------------------------------------------- 573 (637)
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~ 364 (784)
T 4ft4_B 285 KKYVQDVDSNLASSEDQADEDSPLDKDEFVVEKLVGICYGGSDRENGIYFKVQWEGYGPEEDTWEPIDNLSDCPQKIREF 364 (784)
T ss_dssp HHTC-----------------------CCCEEEEEEEEESCSSSCSSEEEEEEETTCCTTSCEEEESGGGTTCHHHHHHH
T ss_pred ccccccccccccccccccccccccccccchhhhhcccccccccccccccchhhhcccccccccccccccccccchhcccc
Confidence
Q ss_pred --------hhhccCCccEEEEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006634 574 --------LIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 636 (637)
Q Consensus 574 --------l~~~~g~~DLVIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK~~~ 636 (637)
.....|++|||+||||||+||.+|+.. |...++.|+|+.||++|+|+|+++||.+
T Consensus 365 ~~~~~~~~~~~~~G~VDvl~GGpPCQ~FS~aG~~k--------g~~~~~~D~R~~L~~~~~riv~~~rPk~ 427 (784)
T 4ft4_B 365 VQEGHKRKILPLPGDVDVICGGPPCQGISGFNRYR--------NRDEPLKDEKNKQMVTFMDIVAYLKPKY 427 (784)
T ss_dssp HHHHHHHTSSCCTTSCSEEEECCCCCSSSGGGGGS--------CTTSTTTSTTCHHHHHHHHHHHHHCCSE
T ss_pred ccccchhhccCCCCCeEEEEecCCCcchhhhhccc--------CcCccccCchhHHHHHHHHHHHHHCCCE
Confidence 011236899999999999999875521 2234588999999999999999999864
No 10
>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}
Probab=99.85 E-value=5.9e-22 Score=212.88 Aligned_cols=111 Identities=13% Similarity=0.125 Sum_probs=90.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceee----EEEeecCHHHHHHHHHHhhhcCCC---------------C-Cc-----
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKG----VISIETSETNRRILKRWWESSGQT---------------G-EL----- 557 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~----vvaVEid~~a~~t~r~~~~~tn~~---------------g-~l----- 557 (637)
.+++||||||||||+++||+++|+++++ |++||+|+.|+++|+.+|...... + ..
T Consensus 9 ~~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~~~~~~~~~~~~~l~~~s~d~k~~~~~~~ 88 (403)
T 4dkj_A 9 KVIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSKNFNPKIERLDRDILSISNDSKMPISEYG 88 (403)
T ss_dssp EEEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCSSCCCCCBCCCTTCCCCBSSSSSCCCHHH
T ss_pred ccceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCCCcccchhhhhhhhhhccccccccccccc
Confidence 4699999999999999999999976666 999999999999999988643100 0 00
Q ss_pred --------------------cccccccccChhhHHHhhhccCCccEEEEcCCCCCcCccCccCCCCCccccccCCCCCC-
Q 006634 558 --------------------VQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPD- 616 (637)
Q Consensus 558 --------------------~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D- 616 (637)
...+||++++..+++ +.+|||+||||||+||.+ |++.|++|
T Consensus 89 i~~l~~~~l~~i~~~~~~~~~~~~DI~~i~~~~ip------~~vDll~ggpPCQ~fS~a------------g~~~g~~d~ 150 (403)
T 4dkj_A 89 IKKINNTIKASYLNYAKKHFNNLFDIKKVNKDNFP------KNIDIFTYSFPCQDLSVQ------------GLQKGIDKE 150 (403)
T ss_dssp HHHHTTBHHHHHHHHHHHHSCBCCCGGGCCTTTSC------SSCSEEEECCCCTTTCTT------------SCCCCCCGG
T ss_pred cccccHHHHHHHHhhcccCCCcccchhhcCHhhCC------CCCcEEEEeCCCCCHHHh------------CCCCCCCcc
Confidence 024888888876653 358999999999999975 44668876
Q ss_pred --CCcchHHHHHHHHHH
Q 006634 617 --FDFSLYYEFVRVVQR 631 (637)
Q Consensus 617 --~Rs~LF~Ey~RIV~~ 631 (637)
+|+.||++|+|+|++
T Consensus 151 ~~~r~~L~~~~~rii~~ 167 (403)
T 4dkj_A 151 LNTRSGLLWEIERILEE 167 (403)
T ss_dssp GCCSGGGHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHH
Confidence 999999999999998
No 11
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.77 E-value=1.2e-19 Score=212.93 Aligned_cols=119 Identities=21% Similarity=0.257 Sum_probs=91.8
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHH----Hhh--
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE----SLI-- 575 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie----~l~-- 575 (637)
...+++|||||||||+++||++||| .++++|||||+.|+.||+.+| ++..++.+||.+|....+. ...
T Consensus 538 ~~~l~~iDLFaG~GGlslGl~~AG~-~~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~~di~~~~~~ 611 (1002)
T 3swr_A 538 LPKLRTLDVFSGCGGLSEGFHQAGI-SDTLWAIEMWDPAAQAFRLNN-----PGSTVFTEDCNILLKLVMAGETTNSRGQ 611 (1002)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHTS-EEEEEEECSSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHHHTCSBCTTCC
T ss_pred CCCCeEEEeccCccHHHHHHHHCCC-CceEEEEECCHHHHHHHHHhC-----CCCccccccHHHHhhhccchhhhhhhhh
Confidence 4579999999999999999999998 368999999999999998765 3445667888776432111 110
Q ss_pred --hccCCccEEEEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006634 576 --HKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 636 (637)
Q Consensus 576 --~~~g~~DLVIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK~~~ 636 (637)
...+.+|||+||||||+||.+|+. + ..+..|+|+.||++|+|+|+++||..
T Consensus 612 ~lp~~~~vDll~GGpPCQ~FS~ag~~----~------~~~~~d~R~~L~~~~~riv~~~rPk~ 664 (1002)
T 3swr_A 612 RLPQKGDVEMLCGGPPCQGFSGMNRF----N------SRTYSKFKNSLVVSFLSYCDYYRPRF 664 (1002)
T ss_dssp BCCCTTTCSEEEECCCCTTCCSSSCC----C------HHHHHHHTTSHHHHHHHHHHHHCCSE
T ss_pred hcccCCCeeEEEEcCCCcchhhhCCC----C------CCcccchhhHHHHHHHHHHHHhCCCE
Confidence 123579999999999999987431 0 12356889999999999999999864
No 12
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.75 E-value=1.4e-19 Score=216.94 Aligned_cols=118 Identities=21% Similarity=0.282 Sum_probs=90.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHH----H----h
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE----S----L 574 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie----~----l 574 (637)
..+++|||||||||+++||++||| .+++++||+++.|++||+.+|. +..++.+||.++....+. . .
T Consensus 850 ~~l~viDLFsG~GGlslGfe~AG~-~~vv~avEid~~A~~ty~~N~p-----~~~~~~~DI~~l~~~~~~gdi~~~~~~~ 923 (1330)
T 3av4_A 850 PKLRTLDVFSGCGGLSEGFHQAGI-SETLWAIEMWDPAAQAFRLNNP-----GTTVFTEDCNVLLKLVMAGEVTNSLGQR 923 (1330)
T ss_dssp CCEEEEEETCTTSHHHHHHHHTTS-EEEEEEECCSHHHHHHHHHHCT-----TSEEECSCHHHHHHHHTTTCSBCSSCCB
T ss_pred CCceEEecccCccHHHHHHHHCCC-CceEEEEECCHHHHHHHHHhCC-----CCcEeeccHHHHhHhhhccchhhhhhhh
Confidence 568999999999999999999998 3689999999999999988653 334556787765432210 0 0
Q ss_pred hhccCCccEEEEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006634 575 IHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 636 (637)
Q Consensus 575 ~~~~g~~DLVIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK~~~ 636 (637)
+...+.+|||+||||||+||.+|+. + ..+..|+|+.||++|+|+|+++||.+
T Consensus 924 lp~~~~vDvl~GGpPCQ~FS~agr~----~------~~~~~d~R~~L~~~~lriv~~~rPk~ 975 (1330)
T 3av4_A 924 LPQKGDVEMLCGGPPCQGFSGMNRF----N------SRTYSKFKNSLVVSFLSYCDYYRPRF 975 (1330)
T ss_dssp CCCTTTCSEEEECCCCTTTCSSSCC----C------HHHHHHHHHSHHHHHHHHHHHHCCSE
T ss_pred ccccCccceEEecCCCccccccccc----c------cccccchhhHHHHHHHHHHHHhcCcE
Confidence 1112579999999999999987431 0 12456889999999999999999863
No 13
>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=99.75 E-value=5e-19 Score=177.51 Aligned_cols=86 Identities=22% Similarity=0.300 Sum_probs=70.3
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+++|||||||||| ||++|||++ + .|+++.+++.+||++|+.++|++ ++++|
T Consensus 32 ~~~~vidLFaGig~---Gl~~aGf~~----------------~-----~N~~~~~~~~~DI~~i~~~~i~~----~~~~D 83 (230)
T 2qrv_B 32 QPVRVLSLFEDIKK---ELTSLGFLE----------------S-----GSDPGQLKHVVDVTDTVRKDVEE----WGPFD 83 (230)
T ss_dssp CCCCEEEESSCCTT---TTTTTTSCC--------------------------CCEEEESCCTTCCHHHHHH----TCCCS
T ss_pred CCceEEEeccChhH---HHHHCCCch----------------h-----hcCCCCcEecCChhhCCHhHhcc----cCCCC
Confidence 45899999999998 899999963 1 23445556789999999988764 47899
Q ss_pred EEEEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 006634 583 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 635 (637)
Q Consensus 583 LVIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK~~ 635 (637)
||+||||||+||.+ ++|++||++|+|||+++||.
T Consensus 84 lliGG~PCQ~FS~a-------------------g~rg~Lf~ef~Riv~~~rPk 117 (230)
T 2qrv_B 84 LVYGATPPLGHTCD-------------------RPPSWYLFQFHRLLQYARPK 117 (230)
T ss_dssp EEEEECCCTTTSSC-------------------SCTHHHHHHHHHHHHHHCCC
T ss_pred EEEECCCCCccccc-------------------CCCchHHHHHHHHHHHHCcC
Confidence 99999999999964 25889999999999999986
No 14
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=99.71 E-value=6e-18 Score=180.25 Aligned_cols=87 Identities=23% Similarity=0.302 Sum_probs=73.3
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
..+++|||||||||| ||++|||++ ..|+++..++.+||++|+.++|++ .+++
T Consensus 187 ~~~ikvidLFaGiGg---Gl~~aGf~v---------------------~~N~~~~~~~~~DI~~i~~~~i~~----~~~~ 238 (386)
T 2pv0_B 187 RQPVRVLSLFEDIKK---ELTSLGFLE---------------------SGSDPGQLKHVVDVTDTVRKDVEE----WGPF 238 (386)
T ss_dssp CCCCCEEEESSCCHH---HHHHTTSSC---------------------SSCCSCSEEEESCCTTCCHHHHHH----SCCC
T ss_pred hcCceeeEEeccCCh---hHhhcCccH---------------------HHcCCCCcEEeCChhhCCHhHhcc----cCCC
Confidence 456999999999997 999999963 135556566789999999987764 4689
Q ss_pred cEEEEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 006634 582 DFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 635 (637)
Q Consensus 582 DLVIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK~~ 635 (637)
|||+||||||+||.+ |+|++||++|+|||+++||.
T Consensus 239 DlliGG~PCQ~FS~A-------------------~~Rg~Lf~ef~Riv~~~rPk 273 (386)
T 2pv0_B 239 DLVYGATPPLGHTCD-------------------RPPSWYLFQFHRLLQYARPK 273 (386)
T ss_dssp SEEEEECCCTTTCSC-------------------SCTHHHHHHHHHHHHHHSCC
T ss_pred CEEEECCCCCccccc-------------------CCcchHHHHHHHHHHHhCCC
Confidence 999999999999963 36899999999999999985
No 15
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=99.51 E-value=2.5e-14 Score=147.88 Aligned_cols=160 Identities=20% Similarity=0.320 Sum_probs=117.4
Q ss_pred CC-ccccccccccchhhHHHhhhhhccCCceeecccccchhcccccccccCCCCCCCCCCC-CCCCccccccCCCCCCCC
Q 006634 310 PP-YFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPP-EPPMTIQDAIPHTKKWWP 387 (637)
Q Consensus 310 pp-fF~yeNV~~~~~~~w~~IsrfL~~i~Pe~vds~~fsaa~R~Rgy~hNLP~~~R~~~~p-~~p~ti~e~lp~~~~~wp 387 (637)
+| ||++|||..+-...+.+|.++|. ..+.+|||+.|.|++|+|.||.++|...+....+ .+.+|++|+|...+.
T Consensus 132 ~P~~~l~ENV~gl~~~~~~~~~~~l~-~~~~vl~a~~~~PQ~R~R~~i~~~~~~~~p~~~~~~~~~tv~d~l~~~~~--- 207 (295)
T 2qrv_A 132 RPFFWLFENVVAMGVSDKRDISRFLE-SNPVMIDAKEVSAAHRARYFWGNLPGMNRPLASTVNDKLELQECLEHGRI--- 207 (295)
T ss_dssp CCCEEEEEEESSBCHHHHHHHHHHHT-SCCCCEEGGGTSSBCCEEEEEECCTTSSSCCCCCSSCCCSGGGTSCTTCE---
T ss_pred CccEEEEEcCcchhhcCccHHHHHHh-cCcEEeecceECCccCcEEEEEEecCccCCCcccccCcccHHHHhcCCcc---
Confidence 44 78999999998888888999996 5899999999999999999999999876522111 236899999976543
Q ss_pred CcCcccccceecccCcchhHHHHHHHHHHhhhcCCCchhhhHHHHHhhcccceeeecCccccCCChhhHHHHhcCCCCCc
Q 006634 388 SWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHT 467 (637)
Q Consensus 388 ~wd~r~k~~ci~t~~~~~~~l~~ri~~~~~~~~~~~~~~~q~~vl~~c~~~nlvW~g~~~~~ple~~E~E~i~GfP~~~T 467 (637)
....+++++++....+. ..++ +.+-. ...++.+.|++.|+.||+|||++|+
T Consensus 208 --~~~~~~~~i~~~~~~~~-----------~g~~--------------~~~~~--~~~~~~R~lt~rE~arlqgFPd~~~ 258 (295)
T 2qrv_A 208 --AKFSKVRTITTRSNSIK-----------QGKD--------------QHFPV--FMNEKEDILWCTEMERVFGFPVHYT 258 (295)
T ss_dssp --ESSSSBC---------------------------------------CCSCE--EETTEEECCCHHHHHHHHTCCTTTT
T ss_pred --cccCccccccCCCceec-----------CCCC--------------CCccc--ccCCCcCCCCHHHHHHHcCCCHHHe
Confidence 22345555554321110 1110 00111 2246789999999999999999999
Q ss_pred ccCCCChHHHHHhhhhhhcccchhhhhccccccCC
Q 006634 468 QAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFP 502 (637)
Q Consensus 468 ~~~~~~~teR~k~Lgnsfqvdtv~~~lsvLK~~f~ 502 (637)
..++++.++++|.+||++.++.+.++...|+.++.
T Consensus 259 ~~~~~s~~~~~~qiGNaVpv~~~~~i~~~i~~~l~ 293 (295)
T 2qrv_A 259 DVSNMSRLARQRLLGRSWSVPVIRHLFAPLKEYFA 293 (295)
T ss_dssp CCTTCCHHHHHHHHHTSCCHHHHHHHHGGGGGGSC
T ss_pred eCCCcCHHHHhccEecCcCHHHHHHHHHHHHHHhc
Confidence 99899999999999999999999999988887764
No 16
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=99.42 E-value=3e-14 Score=149.40 Aligned_cols=177 Identities=12% Similarity=0.103 Sum_probs=114.0
Q ss_pred CCCccccccccccch-hhHHHhhhhh----ccCCceeeccccc-chhccccccc----ccCCCC--------CCCCCCCC
Q 006634 309 QPPYFFYGNVVDVSI-DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL----HNLPTT--------NRFHIPPE 370 (637)
Q Consensus 309 ~ppfF~yeNV~~~~~-~~w~~IsrfL----~~i~Pe~vds~~f-saa~R~Rgy~----hNLP~~--------~R~~~~p~ 370 (637)
+|.||++|||..+-. ..|..|.+.| |.++..++||..| .|++|+|.|+ ..++.. ..+|..+.
T Consensus 111 ~P~~~vlENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~~~~~~f~~~~~~~~~~P~~~~ 190 (333)
T 4h0n_A 111 NVDYILMENVKGFENSTVRNLFIDKLKECNFIYQEFLLCPSTVGVPNSRLRYYCTARRNNLTWPFKRRDEIITRLPKDFG 190 (333)
T ss_dssp TCCEEEEEECTTGGGSHHHHHHHHHHHHTTEEEEEEEECTTTTTCSCCCCEEEEEEEETTSCCCSCCCSSCBSSCSSCCC
T ss_pred CCCEEEEecchhhhhhhHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEeCCCCCCCCcccchhhhCCCCcc
Confidence 399999999998864 3577777777 7889999999999 9999999997 222211 01122222
Q ss_pred CCCccccccCCC-----------CCCCCCcCcccc--cce-ecccCcc-------h------hHHHHHHHHHHhhhcCCC
Q 006634 371 PPMTIQDAIPHT-----------KKWWPSWDTRKH--LSC-INSGTSG-------I------SQLCERFEKLLRDSRGVL 423 (637)
Q Consensus 371 ~p~ti~e~lp~~-----------~~~wp~wd~r~k--~~c-i~t~~~~-------~------~~l~~ri~~~~~~~~~~~ 423 (637)
.+.+|.|+|... .+||..+|-.+. .+| ..|...+ + .....++.+.+....+ .
T Consensus 191 ~~~~l~d~Le~~~~~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~k~~~~~~~g~gs~~~~~~~~~~~~~~~~~~~~~~-G 269 (333)
T 4h0n_A 191 VPHSLESIIEEDVDEKFLVPEKMLRCAKVFDICYKTSKRSCCFTKAYTHYADGTGSIFTDKPREVVQKCYAAAAQNEI-G 269 (333)
T ss_dssp SCCCSSTTCCSSCCGGGBCCHHHHTTGGGCCEECTTCSCCCCCCTTBTTBSSSSCCEECSSCHHHHHHHHHHGGGSCT-T
T ss_pred ccccHHHHhccCCcccccCCHHHHHHHHHhccCChhhhhhhhhccccceEEeccCceeccccccchhhhhcccccCCC-C
Confidence 268899998521 145555553221 111 1111100 0 0011122111111100 0
Q ss_pred chhhhHHHHHhhcccceeeecCccccCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhhcccc
Q 006634 424 SSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLK 498 (637)
Q Consensus 424 ~~~~q~~vl~~c~~~nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lgnsfqvdtv~~~lsvLK 498 (637)
.+.+ +.+..+.++++|+|.|++||+|||.+||...+++.++|||.+||+..|++++++.+.|.
T Consensus 270 -~~~~-----------~~~~~~~~~R~lt~~E~~rl~gfp~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~l~ 332 (333)
T 4h0n_A 270 -GEKF-----------VELFKELKLRYFTPKEVLMIMCFPKSYNLPTNISMKQCYRLLGNSVNVKVISELLKILF 332 (333)
T ss_dssp -CHHH-----------HHHHHTTTCBCCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred -cccc-----------eeeccCCCcCCCCHHHHHHhCCCCccccCCCCCCHHHHHHHhCCccCHHHHHHHHHHHh
Confidence 1111 12234678999999999999999999998888999999999999999999999987763
No 17
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=99.37 E-value=1.5e-13 Score=143.84 Aligned_cols=178 Identities=15% Similarity=0.149 Sum_probs=118.5
Q ss_pred CCCccccccccccch-hhHHHhhhhh----ccCCceeeccccc-chhccccccc-ccCCCCCCCCCC--CCCCCcccccc
Q 006634 309 QPPYFFYGNVVDVSI-DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL-HNLPTTNRFHIP--PEPPMTIQDAI 379 (637)
Q Consensus 309 ~ppfF~yeNV~~~~~-~~w~~IsrfL----~~i~Pe~vds~~f-saa~R~Rgy~-hNLP~~~R~~~~--p~~p~ti~e~l 379 (637)
+|.||++|||..+-. ..|..|.+.| |.++..++||..| .|++|+|.|+ +.... -.+|.. +.++.+|+|+|
T Consensus 122 ~P~~~~lENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~yGvPQ~R~R~fivg~r~~-f~fP~~~~~~~~~~l~d~L 200 (327)
T 3qv2_A 122 KPKHIFIENVPLFKESLVFKEIYNILIKNQYYIKDIICSPIDIGIPNSRTRYYVMARLTP-FKNEIQLHQEKESMISNYL 200 (327)
T ss_dssp CCSEEEEEECGGGGGSHHHHHHHHHHHHTTCEEEEEEECGGGGTCSBCCCEEEEEEESSC-CCSCCCCCCCSCCCGGGGC
T ss_pred CCCEEEEEchhhhcChHHHHHHHHHHHhCCCEEEEEEEeHHHcCCCccceEEEEEEEeCC-CCCCCcccccccccHHHHh
Confidence 799999999998865 4677787777 7789999999999 9999999994 44433 122221 12358899998
Q ss_pred CC--------CCCCCCCcCcc--------cccceecccCcchhHHHHHHHHHHhhhcCCCchhhhHHHHHhhcccceeee
Q 006634 380 PH--------TKKWWPSWDTR--------KHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWV 443 (637)
Q Consensus 380 p~--------~~~~wp~wd~r--------~k~~ci~t~~~~~~~l~~ri~~~~~~~~~~~~~~~q~~vl~~c~~~nlvW~ 443 (637)
+. ..+||..|... ++-.|.|..+. . . ....++.+.... -......++++.
T Consensus 201 e~~~~~~y~l~~~~~~~~~~~~di~~~~~~~~~~~t~~y~-~--y-------~~~~gs~l~~~~----~~~~~~~~~~~~ 266 (327)
T 3qv2_A 201 DNNVNESYSIPSDLILKKGMLFDIVGKDDKRTCCFTKSYT-K--I-------VEGTGSIYCPIE----PHFIPVKKAEDL 266 (327)
T ss_dssp CSSCCGGGBCCHHHHHHHGGGSCEEETTSSCBCCCCTTTT-T--S-------STTSCCEEESSC----SSCCCCSSGGGG
T ss_pred cccccccccCCHHHHHhhhcccccccccccccccccccce-E--E-------ecCCCceeeccc----ccccccCCceee
Confidence 62 22233333211 11123322110 0 0 001111110000 000112346677
Q ss_pred cCccccCCChhhHHHHhcCCCCCccc-CCCChHHHHHhhhhhhcccchhhhhccccccC
Q 006634 444 GAYKLGPVDPEHIELILGYPSNHTQA-AGNSLTARLESLRHCFQTDTLGYHLSVLKSMF 501 (637)
Q Consensus 444 g~~~~~ple~~E~E~i~GfP~~~T~~-~~~~~teR~k~Lgnsfqvdtv~~~lsvLK~~f 501 (637)
.+++++.|+|.|+.||+|||.+|+.. .+++.+++||.+|||+.+++++++...|+++.
T Consensus 267 ~~~~~R~lt~~E~~rlqgfP~~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~l~~~l 325 (327)
T 3qv2_A 267 LNKNLRYFTPNEIKKIHGFSSNFTTQIDGLTDKQQYQCLGNSVSCFVIAQLMEYLFDDL 325 (327)
T ss_dssp TTSCCBCCCHHHHHHHTTCCTTCCSCCTTCCHHHHHHHHHTSCCHHHHHHHHHHHTTTS
T ss_pred cCCccccCcHHHHHHhCcCCHHHcCCcCCCCHHHHHHHccCccCHHHHHHHHHHHHHHh
Confidence 88999999999999999999999987 78999999999999999999999988887653
No 18
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=98.87 E-value=2.2e-10 Score=117.34 Aligned_cols=192 Identities=18% Similarity=0.170 Sum_probs=101.6
Q ss_pred cCCCCccccccccccch----hhHHHhhhhh----ccCCceeeccccc-chhccccccc----ccCCCCCCCCCCCCCCC
Q 006634 307 VAQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL----HNLPTTNRFHIPPEPPM 373 (637)
Q Consensus 307 ~~~ppfF~yeNV~~~~~----~~w~~IsrfL----~~i~Pe~vds~~f-saa~R~Rgy~----hNLP~~~R~~~~p~~p~ 373 (637)
..+|.||++|||..+-. ..+..|-+.| |.|.+.++||.+| .||+|+|.|+ ..++..--+|.--....
T Consensus 100 ~~~Pk~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vlna~~yGvPQ~R~Rvfivg~r~~~~~~~~~p~~~~~~~ 179 (331)
T 3ubt_Y 100 QKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIGFRKELNINYLPPIPHLIKP 179 (331)
T ss_dssp HHCCSEEEEEECCGGGGCTTSHHHHHHHHHHHHHTEEEEEEEEEGGGTTCSBCCEEEEEEEEEGGGCCCCCCCCCCSCCC
T ss_pred ccCCeEEEeeeecccccccccchhhhhhhhhccCCcEEEEEecccccCCCCcccceEEEEEEcCCCCcCCCCCCCcCCCC
Confidence 45899999999987743 4566666666 6799999999999 9999999997 33333322222112256
Q ss_pred ccccccCCCC-CCCCCcCcccc--cceeccc-------CcchhHHHHHHHHH------HhhhcCCCch-hhhHHHHHhhc
Q 006634 374 TIQDAIPHTK-KWWPSWDTRKH--LSCINSG-------TSGISQLCERFEKL------LRDSRGVLSS-QQQRDILHRSE 436 (637)
Q Consensus 374 ti~e~lp~~~-~~wp~wd~r~k--~~ci~t~-------~~~~~~l~~ri~~~------~~~~~~~~~~-~~q~~vl~~c~ 436 (637)
|+.|++.... .-+|.+++... ..++... .........+++.. +...+..... ...+.+...++
T Consensus 180 t~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (331)
T 3ubt_Y 180 TFKDVIWDLKDNPIPALDKNKTNGNKCIYPNHEYFIGSYSTIFMSRNRVRQWNEPAFTVQASGRQCQLHPQAPVMLKVSK 259 (331)
T ss_dssp CGGGTSGGGSSSCEECBGGGBCCGGGSSSTTCEECCSCCCTTGGGSCCBCCTTSCBCCCCSCSTTCCBCTTSCCCEEEET
T ss_pred cHHHHhhhcccCCcccccccccccccccccchhhhcccccccccccccccccccccccccccCcccccccccceeeeecC
Confidence 7777652110 01111111000 0000000 00000000000000 0000000000 00000000111
Q ss_pred ccceee-ecCccccCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhhccccc
Q 006634 437 KLNLVW-VGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS 499 (637)
Q Consensus 437 ~~nlvW-~g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lgnsfqvdtv~~~lsvLK~ 499 (637)
..+-.+ ..++..+.|++.|+.||+|||++|+.- +.+.++++|.+||+..+....++...++.
T Consensus 260 ~~~~~~~~~~~~~R~LT~rE~aRLQgFPd~f~f~-~~s~~~~ykqiGNAVpp~la~~I~~~I~~ 322 (331)
T 3ubt_Y 260 NLNKFVEGKEHLYRRLTVRECARVQGFPDDFIFH-YESLNDGYKMIGNAVPVNLAYEIAKTIKS 322 (331)
T ss_dssp TEEECCTTCGGGCCBCBHHHHHHHHTCCTTCCCC-CSBHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CCCcccCCCCCcCcCCCHHHHHHhCCCCCCCEeC-CCCHHHHhhhCccCccHHHHHHHHHHHHH
Confidence 111111 134557999999999999999999863 35899999999999998877776655543
No 19
>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}
Probab=98.81 E-value=1.7e-09 Score=116.46 Aligned_cols=187 Identities=12% Similarity=0.119 Sum_probs=111.7
Q ss_pred cCCCCccccccccccchh----hHHHhhhhh----ccCCceeeccccc-chhcccccccc------cCCCCCCC---CCC
Q 006634 307 VAQPPYFFYGNVVDVSID----CWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLH------NLPTTNRF---HIP 368 (637)
Q Consensus 307 ~~~ppfF~yeNV~~~~~~----~w~~IsrfL----~~i~Pe~vds~~f-saa~R~Rgy~h------NLP~~~R~---~~~ 368 (637)
..+|.||++|||..+-.. .|..|.+.| |.+.+.++||..| .|++|+|.|+= ..|..... .++
T Consensus 175 ~~~Pk~~l~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~~f~fP~~~~~~~~~~~ 254 (403)
T 4dkj_A 175 EEMPKYLLMENVKNLLSHKNKKNYNTWLKQLEKFGYKSKTYLLNSKNFDNCQNRERVFCLSIRDDYLEKTGFKFKELEKV 254 (403)
T ss_dssp GGSCSEEEEEEEGGGGSHHHHHHHHHHHHHHHHTTEEEEEEEEEGGGTTCSBCCEEEEEEEEEHHHHHHHCCCCCCGGGC
T ss_pred ccCCCEEEEecchhhhhhccchHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEcCCCCCCCcccccccccc
Confidence 378999999999998653 566776666 6689999999999 99999999962 22222111 111
Q ss_pred CCCCCccccccCCC--CCC-------CCCc-CcccccceecccCcchhHHHHHHHHHHhhhcC-CCchhhhHHHHHhhcc
Q 006634 369 PEPPMTIQDAIPHT--KKW-------WPSW-DTRKHLSCINSGTSGISQLCERFEKLLRDSRG-VLSSQQQRDILHRSEK 437 (637)
Q Consensus 369 p~~p~ti~e~lp~~--~~~-------wp~w-d~r~k~~ci~t~~~~~~~l~~ri~~~~~~~~~-~~~~~~q~~vl~~c~~ 437 (637)
..++.+|.|+|... .++ .|.. .++.++.+..+.-.....-..+ +. ...+ .++... .+..
T Consensus 255 ~~~~~~l~dile~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~-~~~~~~~Tlt~------~~~~ 324 (403)
T 4dkj_A 255 KNPPKKIKDILVDSSNYKYLNLNKYETTTFRETKSNIISRPLKNYTTFNSENY---VY-NINGIGPTLTA------SGAN 324 (403)
T ss_dssp CCCCCCGGGGCCCCSCCCCCCCTTSCCCCCEECTTSBEEEECTTSCSCGGGSE---EE-ETTSBBCCCCS------SSGG
T ss_pred ccccccHHHHhccccccccchhhhhccccccccccchhccccccccccccCcc---ee-cCCCcccceec------CCCC
Confidence 22467999999733 111 1110 1111111111000000000000 00 0000 000000 0011
Q ss_pred cceeeecCccccCCChhhHHHHhcCCC-CCcccC--C-CChHHHHHhhhhhhcccchhhhhccccccCCC
Q 006634 438 LNLVWVGAYKLGPVDPEHIELILGYPS-NHTQAA--G-NSLTARLESLRHCFQTDTLGYHLSVLKSMFPG 503 (637)
Q Consensus 438 ~nlvW~g~~~~~ple~~E~E~i~GfP~-~~T~~~--~-~~~teR~k~Lgnsfqvdtv~~~lsvLK~~f~~ 503 (637)
.-++-....+++.|+|.|+.||+|||. +|.... + ++.+++||.+|||..|+++.+++..|+..+..
T Consensus 325 ~~~~~~~~~~~R~ltprE~~rlqGFpd~~~~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~i~~~l~~ 394 (403)
T 4dkj_A 325 SRIKIETQQGVRYLTPLECFKYMQFDVNDFKKVQSTNLISENKMIYIAGNSIPVKILEAIFNTLEFVNNE 394 (403)
T ss_dssp GSCEEEETTEEEECCHHHHHHHTTCCHHHHHHHHHTSCSCHHHHHHHHHTSCCHHHHHHHHHTCCCCCCC
T ss_pred ceeEEccCCCcccCCHHHHHHHcCCCHHHhhhhhccCCCCHHHHHhhcCCccCHHHHHHHHHHHHHHHhc
Confidence 122223457799999999999999999 687653 3 79999999999999999999999888876653
No 20
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=98.79 E-value=5.5e-09 Score=114.84 Aligned_cols=177 Identities=13% Similarity=0.235 Sum_probs=106.0
Q ss_pred cCCCCccccccccccch----hhHHHhhhhh----ccCC---------ceeecccccchhccccccc----ccCCCCCCC
Q 006634 307 VAQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLE---------PEFVNSQYFSALSRREGYL----HNLPTTNRF 365 (637)
Q Consensus 307 ~~~ppfF~yeNV~~~~~----~~w~~IsrfL----~~i~---------Pe~vds~~fsaa~R~Rgy~----hNLP~~~R~ 365 (637)
..+|.||++|||..+-. ..|..|.+-| |.|. +.++||++|.||+|+|.|+ .+++....|
T Consensus 217 ~~rPk~fvlENV~gl~s~~~g~~f~~i~~~L~~lGY~v~~~~~~g~~~~~vlnA~~~vPQ~R~R~fivg~r~~~~~~~~F 296 (482)
T 3me5_A 217 ARRPAMFVLENVKNLKSHDKGKTFRIIMQTLDELGYDVADAEDNGPDDPKIIDGKHFLPQHRERIVLVGFRRDLNLKADF 296 (482)
T ss_dssp HHCCSEEEEEEETTTTTGGGGHHHHHHHHHHHHTTEEETTTTCCSTTCTTEEEGGGTSSBCCEEEEEEEEEGGGCCCTTC
T ss_pred HcCCcEEEEeCcHHHhcccCCcHHHHHHHHHhcCCcEEEeccccCcccceeeeccccCCccceEEEEEEEecCcccccCc
Confidence 46899999999999854 3566666666 4554 7899999999999999997 344433333
Q ss_pred C------CCCCCCCccccccCCCCCCCCCcCcccccceecccCcchhHHHHHHHHH----HhhhcCC-C---chhhhHHH
Q 006634 366 H------IPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKL----LRDSRGV-L---SSQQQRDI 431 (637)
Q Consensus 366 ~------~~p~~p~ti~e~lp~~~~~wp~wd~r~k~~ci~t~~~~~~~l~~ri~~~----~~~~~~~-~---~~~~q~~v 431 (637)
. ..|.++.||.|+|.... + .|. ..+ .++-+.+.+. ..+..++ + ......
T Consensus 297 ~~~~~~~~~p~~~~~l~diLe~~~------~--~ky--~l~-----~~~~~~l~~~~~~~~~~g~gf~~~i~~~~~~~-- 359 (482)
T 3me5_A 297 TLRDISECFPAQRVTLAQLLDPMV------E--AKY--ILT-----PVLWKYLYRYAKKHQARGNGFGYGMVYPNNPQ-- 359 (482)
T ss_dssp CGGGGGGGSCSSCCCTGGGSCSSC------C--GGG--BCC-----HHHHHHHHHHHHC----------CEECTTSGG--
T ss_pred CccccccccCCCcccHHHHhhccc------c--ccc--ccC-----HHHHHHHHHHHHhhhcccCCcccceecCCccc--
Confidence 2 24556679999885221 0 000 000 0111111110 0011110 0 000000
Q ss_pred HHhhcc---------cce-e---e-------------ecCccccCCChhhHHHHhcCCCC--CcccCCCChHHHHHhhhh
Q 006634 432 LHRSEK---------LNL-V---W-------------VGAYKLGPVDPEHIELILGYPSN--HTQAAGNSLTARLESLRH 483 (637)
Q Consensus 432 l~~c~~---------~nl-v---W-------------~g~~~~~ple~~E~E~i~GfP~~--~T~~~~~~~teR~k~Lgn 483 (637)
..|+. .++ + | ....+++.|+|.|+.||+|||.. ++..+.++.+.+||.+||
T Consensus 360 -~~~~Ti~a~~~k~gs~~~i~~~~~~~~~~~~~~~~~~~~~~~R~lTprE~~rlqgFp~~~~~~~~~~~s~~~~y~q~GN 438 (482)
T 3me5_A 360 -SVTRTLSARYYKDGAEILIDRGWDMATGEKDFDDPLNQQHRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGN 438 (482)
T ss_dssp -GGTCCBCCC---CCSSSEECCCCCHHHHHHCTTCTTGGGGCCEECCHHHHHHHHTSSCTTCCCSCCCSCHHHHHHHHHT
T ss_pred -ccceeeEEeeeccCcceeecccccccCCccccccccccCCCcccCCHHHHHHHcCCCCccccceeccCCHHHHHHHcCC
Confidence 00100 011 1 1 01357899999999999999943 344458999999999999
Q ss_pred hhcccchhhhhccccccC
Q 006634 484 CFQTDTLGYHLSVLKSMF 501 (637)
Q Consensus 484 sfqvdtv~~~lsvLK~~f 501 (637)
+..++++..+...|+.++
T Consensus 439 sV~v~v~~~i~~~l~~~l 456 (482)
T 3me5_A 439 SVVVPVFAAVAKLLEPKI 456 (482)
T ss_dssp SCCHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHH
Confidence 999999999887776643
No 21
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=98.72 E-value=9.2e-09 Score=107.50 Aligned_cols=182 Identities=13% Similarity=0.117 Sum_probs=104.2
Q ss_pred CCCCccccccccccch----hhHHHhhhhh----ccCCceeeccccc-chhcccccccccCC-CCCC-CCCCCCC---CC
Q 006634 308 AQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLHNLP-TTNR-FHIPPEP---PM 373 (637)
Q Consensus 308 ~~ppfF~yeNV~~~~~----~~w~~IsrfL----~~i~Pe~vds~~f-saa~R~Rgy~hNLP-~~~R-~~~~p~~---p~ 373 (637)
.+|.||++|||..+-. ..|..|.+.| |.+...++||..| .|++|+|.|+=-.- ..+. ....|.| +.
T Consensus 111 ~~P~~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~~iv~~~~~~~~~~~~fP~~~~~~~ 190 (327)
T 2c7p_A 111 KKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELNT 190 (327)
T ss_dssp HCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEEEEEEGGGGTCSBCCEEEEEEEEBGGGCCCCCCCCCCCCCCC
T ss_pred ccCcEEEEeCcHHHHhccccHHHHHHHHHHHhCCCEEEEEEEEHHHcCCCccceEEEEEEEeCCCCcccccCCCCcCCCC
Confidence 5899999999998864 3566776666 6788999999999 99999999984321 1110 0122332 57
Q ss_pred ccccccCCC--CCCCC-C-----cCcccccceecccCcchhHHH-HHHHHHHhhhc-CCCchhhhHHHHHh----hc-cc
Q 006634 374 TIQDAIPHT--KKWWP-S-----WDTRKHLSCINSGTSGISQLC-ERFEKLLRDSR-GVLSSQQQRDILHR----SE-KL 438 (637)
Q Consensus 374 ti~e~lp~~--~~~wp-~-----wd~r~k~~ci~t~~~~~~~l~-~ri~~~~~~~~-~~~~~~~q~~vl~~----c~-~~ 438 (637)
|+.|++... ..+|. + |.-..+....... ....+. ..... ..+.. +.+... |... +. ..
T Consensus 191 tl~d~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~T----i~~~~~~~~~~~~ 263 (327)
T 2c7p_A 191 FVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKT--VRLGIVGKGGQG-ERIYSTRGIAIT----LSAYGGGIFAKTG 263 (327)
T ss_dssp CGGGTCCCGGGTGGGEECCTTCEECSCCCSSCCSSC--CEEEESTTCCTT-CEEEETTSCBCC----CCSSCCSTTTTTC
T ss_pred cHHHHhcccCCcccccccCCcceeEeeccccCccch--hhhhhccCCccc-cccccCCCCcCc----eecCCCCccCCCC
Confidence 899998421 11111 0 0000000000000 000000 00000 00000 000000 0000 11 11
Q ss_pred ceeeecCccccCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhhcccccc
Q 006634 439 NLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSM 500 (637)
Q Consensus 439 nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lgnsfqvdtv~~~lsvLK~~ 500 (637)
+.+. +.+.+.|++.|+.||+|||++|+. ..+.++++|.+||+..+....++...|+..
T Consensus 264 ~~~~--~~~~R~LT~rE~aRLQgFPd~f~f--~gs~~~~ykqIGNAVp~~l~~~Ia~~i~~~ 321 (327)
T 2c7p_A 264 GYLV--NGKTRKLHPRECARVMGYPDSYKV--HPSTSQAYKQFGNSVVINVLQYIAYNIGSS 321 (327)
T ss_dssp EEEE--TTEEEECCHHHHHHHTTCCTTSCC--CSSHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccCC--CCCCcCCCHHHHHHHCCCCcCcEe--CCCHHHHHhHccCCCCHHHHHHHHHHHHHH
Confidence 2232 677899999999999999999997 479999999999999998888776666543
No 22
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.71 E-value=1.6e-08 Score=92.20 Aligned_cols=98 Identities=19% Similarity=0.222 Sum_probs=69.8
Q ss_pred CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhhcCCCCCCCcccCcCCCCCCCCCCCccCCCCCCCCCCccccchhhHH
Q 006634 1 MGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMDEGLHIEK 80 (637)
Q Consensus 1 MGF~~e~V~KaI~e~Ge~~~d~iLE~Lltysal~~~~s~ss~s~~~~~~d~~~~~~s~~~~~~~~~~e~~~~~~s~~~~~ 80 (637)
||||.+.|.||++.+|. |.+.++|-|++|..|+..+-...+ .+. .+. ..+..+.. ......+
T Consensus 18 MGFp~~~~~kAl~~~g~-~~e~amewL~~h~~L~d~~~d~~~----------~e~--~l~-~~~~~~~~----~~~~~~~ 79 (118)
T 4ae4_A 18 MGYSYECVLRAMKAAGA-NIEQILDYLFAHGQLCEKGFDPLL----------VEE--ALE-MHQCSEEK----MMEFLQL 79 (118)
T ss_dssp TTCCHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHTTCCHHH----------HHH--HHH-HCSSCHHH----HHHHHHH
T ss_pred cCCCHHHHHHHHHHHCc-CHHHHHHHHHHhchhcccCCChhh----------hHH--HHH-hccCCccc----cccCHHH
Confidence 99999999999999999 999999999999988754211000 000 000 00000000 0123456
Q ss_pred HHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhh
Q 006634 81 RASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 118 (637)
Q Consensus 81 ~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q 118 (637)
+..|+.|||+++.|.+|+.+++-+ ++.=+|.|++.-
T Consensus 80 v~~L~eMGF~~~~a~~AL~~~~nd--~erAlewL~~~~ 115 (118)
T 4ae4_A 80 MSKFKEMGFELKDIKEVLLLHNND--QDNALEDLMARA 115 (118)
T ss_dssp HHHHHHTTCCHHHHHHHHHHTTTC--HHHHHHHHHHHC
T ss_pred HHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHHhc
Confidence 899999999999999999999987 589999999864
No 23
>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=98.65 E-value=4.3e-09 Score=105.72 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=47.5
Q ss_pred ccccCCCC-ccccccccccchhhHHHhhhhhccCCceeecccccchhcccccccccCCCCCC
Q 006634 304 NKVVAQPP-YFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNR 364 (637)
Q Consensus 304 ~~~~~~pp-fF~yeNV~~~~~~~w~~IsrfL~~i~Pe~vds~~fsaa~R~Rgy~hNLP~~~R 364 (637)
|+...++| ||++|||..|.......|.+||. +.+.+|||.+|.+++|+|.||+|+|.+++
T Consensus 116 Pk~~~~~P~~fv~ENV~gL~~~~~~~i~~~l~-~~~~vLnA~dfgvpQrRr~f~g~~~~~~~ 176 (230)
T 2qrv_B 116 PKPGSPRPFFWMFVDNLVLNKEDLDVASRFLE-MEPVTIPDVHGGSLQNAVRVWSNIPAIRS 176 (230)
T ss_dssp CCSSCCSCCEEEEEECSCSCHHHHHHHHHHHT-SCCEECCCCCSCC----CEEEECSTTSST
T ss_pred cCcccCCCcEEEEeccHHhhhccHHHHHHHHc-CCcEEEEcccCCcCcccEEEEeecCCCCc
Confidence 44333345 67899999998888899999995 79999999999999999999999998865
No 24
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=98.63 E-value=3.1e-08 Score=103.74 Aligned_cols=54 Identities=19% Similarity=0.311 Sum_probs=48.2
Q ss_pred cCccccCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhhccc
Q 006634 444 GAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL 497 (637)
Q Consensus 444 g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lgnsfqvdtv~~~lsvL 497 (637)
.+.+++.|++.|+.||+|||++|+..++++.+++||.+||+..|+.+..++..|
T Consensus 288 h~~~~R~lT~RE~aRLqgFPd~f~f~g~~s~~~~ykqiGNAVpv~v~~~I~~~l 341 (343)
T 1g55_A 288 LILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKIL 341 (343)
T ss_dssp HTTCEECCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred CCCCccccCHHHHHHHcCCChhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHH
Confidence 466789999999999999999999876789999999999999999888776544
No 25
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.58 E-value=1.1e-07 Score=86.60 Aligned_cols=103 Identities=13% Similarity=0.127 Sum_probs=69.7
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCC--CC-CCcccc-cchhh
Q 006634 76 LHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTN--ED-KSDETL-YGTME 151 (637)
Q Consensus 76 ~~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~~~~~~~e~~d~~~d~d~~~--~e-~~~e~~-~~~~~ 151 (637)
+..+.+..|+.||||++.|.+|+..+|. + ++.++++|++++.+...+- +|.+... +- ..++.- ....+
T Consensus 7 ~e~~~v~~l~~MGFp~~~~~kAl~~~g~-~-~e~amewL~~h~~L~d~~~------d~~~~e~~l~~~~~~~~~~~~~~~ 78 (118)
T 4ae4_A 7 SERQCVETVVNMGYSYECVLRAMKAAGA-N-IEQILDYLFAHGQLCEKGF------DPLLVEEALEMHQCSEEKMMEFLQ 78 (118)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHCS-C-HHHHHHHHHHHHHHHHTTC------CHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHCc-C-HHHHHHHHHHhchhcccCC------ChhhhHHHHHhccCCccccccCHH
Confidence 5677889999999999999999999998 5 5999999999986543211 0000000 00 000000 01124
Q ss_pred hHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhh
Q 006634 152 ITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFS 188 (637)
Q Consensus 152 k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~A 188 (637)
++..|..|||++++|.-|+-+++.| ++-=+|-+++
T Consensus 79 ~v~~L~eMGF~~~~a~~AL~~~~nd--~erAlewL~~ 113 (118)
T 4ae4_A 79 LMSKFKEMGFELKDIKEVLLLHNND--QDNALEDLMA 113 (118)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTTC--HHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHH
Confidence 5679999999999999999999987 3444444443
No 26
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=98.27 E-value=7.2e-07 Score=102.22 Aligned_cols=55 Identities=7% Similarity=0.042 Sum_probs=44.2
Q ss_pred ccceeeecCccccCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhh
Q 006634 437 KLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYH 493 (637)
Q Consensus 437 ~~nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lgnsfqvdtv~~~ 493 (637)
..+..|+-+.+.+.|+|.|+.||+|||++|+.. -+.+++||.+||+.-+.....+
T Consensus 679 ~~~~~~iHp~~~R~LTpRE~ARLQgFPD~y~f~--Gs~~~~ykQIGNAVpp~lA~aI 733 (784)
T 4ft4_B 679 PHNQVIIHPTQARVLTIRENARLQGFPDYYRLF--GPIKEKYIQVGNAVAVPVARAL 733 (784)
T ss_dssp SSSSEEECSSSSSBCCHHHHHHHTTCCTTCCCC--SCHHHHHHHHHHSCCHHHHHHH
T ss_pred CCCCeecCCCCCcCCcHHHHHHHCCCCCCCEeC--CCHHHHHhhccCCCCHHHHHHH
Confidence 334445556788999999999999999999874 4899999999999866654444
No 27
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=98.09 E-value=1.5e-05 Score=72.64 Aligned_cols=106 Identities=19% Similarity=0.185 Sum_probs=70.6
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCcc-------cccchh
Q 006634 78 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDE-------TLYGTM 150 (637)
Q Consensus 78 ~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~~~~~~~e~~d~~~d~d~~~~e~~~e-------~~~~~~ 150 (637)
.+.+..|+.||||+..+.+|+..||..+ ++.-+++|+.++.-...+..- .....++.. ....+ .+....
T Consensus 4 ~~~l~~L~~MGF~~~~a~~AL~~t~n~~-~e~A~~wL~~~~~d~di~epl--~~~~~~s~~-~~~~~~l~~~~~~~~~~e 79 (126)
T 2lbc_A 4 ESSVMQLAEMGFPLEACRKAVYFTGNMG-AEVAFNWIIVHMEEPDFAEPL--TMPGYGGAA-SAGASVFGASGLDNQPPE 79 (126)
T ss_dssp THHHHHHHTTSSCCHHHHHHHHHHTSCC-HHHHHHHHHHGGGCSSSSCTT--CCSSCCSSS-SSCCCCSTTSSCCCCCCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCC-HHHHHHHHHHhcccccccccc--ccccccccc-ccchhhhcccccccCcCH
Confidence 3578899999999999999999998854 689999999986533211000 000000000 00000 111234
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhhc
Q 006634 151 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSG 189 (637)
Q Consensus 151 ~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~Aa 189 (637)
+++..|+.|||++++|..|+..+|-+ ++.-++.++..
T Consensus 80 ~~v~~L~~MGF~~~~a~~AL~~~~~~--~e~A~e~L~~~ 116 (126)
T 2lbc_A 80 EIVAIITSMGFQRNQAIQALRATNNN--LERALDWIFSH 116 (126)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHTSC--HHHHHHHHHTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhC
Confidence 56779999999999999999999874 66667777653
No 28
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=97.98 E-value=2.6e-06 Score=90.61 Aligned_cols=53 Identities=13% Similarity=0.178 Sum_probs=41.6
Q ss_pred CccccCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhhccccc
Q 006634 445 AYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS 499 (637)
Q Consensus 445 ~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lgnsfqvdtv~~~lsvLK~ 499 (637)
+.+-++|++-|.-||+|||++|... .+.++.+|.+||+.-+.....+-..++.
T Consensus 313 P~~~R~lTvRE~ARlQsFPD~f~f~--g~~~~~~~qIGNAVPp~la~aia~~I~~ 365 (376)
T 3g7u_A 313 PYHPRVITPREAARLQGFPDWFRFH--VTKWHSFRQIGNSVSPIVAEYILKGLYN 365 (376)
T ss_dssp SSSSSBCCHHHHHHHHTCCTTCCCC--SSHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CccCcCCCHHHHHHhCCCCcceEEC--CChHHhheeeecCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999884 5788889999999876654444444443
No 29
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=97.94 E-value=4.9e-05 Score=69.30 Aligned_cols=102 Identities=18% Similarity=0.157 Sum_probs=66.9
Q ss_pred CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhhcCCCCCCCcccCcCCCCCCCCCCCccCCCCCCCCCC--c-cccchh
Q 006634 1 MGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPN--V-MDEGLH 77 (637)
Q Consensus 1 MGF~~e~V~KaI~e~Ge~~~d~iLE~Lltysal~~~~s~ss~s~~~~~~d~~~~~~s~~~~~~~~~~e~~--~-~~~s~~ 77 (637)
|||+++.+.||+...|..+.+.-++-|+....-. ..++.- ..+..........+.. . ......
T Consensus 13 MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d~------------di~epl--~~~~~~s~~~~~~~~l~~~~~~~~~~ 78 (126)
T 2lbc_A 13 MGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEP------------DFAEPL--TMPGYGGAASAGASVFGASGLDNQPP 78 (126)
T ss_dssp TSSCCHHHHHHHHHHTSCCHHHHHHHHHHGGGCS------------SSSCTT--CCSSCCSSSSSCCCCSTTSSCCCCCC
T ss_pred cCCCHHHHHHHHHHcCCCCHHHHHHHHHHhcccc------------cccccc--cccccccccccchhhhcccccccCcC
Confidence 9999999999999999889999999999885311 000000 0000000000000000 0 000135
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhh
Q 006634 78 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 118 (637)
Q Consensus 78 ~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q 118 (637)
.+.+..|+.|||+++.|.+|+..+|-+ ++.=+++|+...
T Consensus 79 e~~v~~L~~MGF~~~~a~~AL~~~~~~--~e~A~e~L~~~~ 117 (126)
T 2lbc_A 79 EEIVAIITSMGFQRNQAIQALRATNNN--LERALDWIFSHP 117 (126)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHTSC--HHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence 678899999999999999999999753 588899998753
No 30
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=97.79 E-value=5.5e-05 Score=79.91 Aligned_cols=86 Identities=19% Similarity=0.146 Sum_probs=62.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCC-C-CCccccccccccChhhHHHhhhccCC
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-T-GELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~-~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
.+-+|||||||+|++++.+.+.|. ..|++||+++.+.+..+.+....+. . ...++.+|+.++.. .+....+.
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g~--~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~----~~~~~~~~ 293 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLR----TYRDRGEK 293 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHH----HHHHTTCC
T ss_pred CCCeEEEeeccCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHH----HHHhcCCC
Confidence 467899999999999999999884 4689999999999999887754322 1 22345667654421 12112357
Q ss_pred ccEEEEcCCCCCcC
Q 006634 581 IDFVICQNSVPQIP 594 (637)
Q Consensus 581 ~DLVIGGpPCQ~FS 594 (637)
||+|+..||+...+
T Consensus 294 fD~Ii~dpP~~~~~ 307 (396)
T 3c0k_A 294 FDVIVMDPPKFVEN 307 (396)
T ss_dssp EEEEEECCSSTTTC
T ss_pred CCEEEECCCCCCCC
Confidence 99999999987665
No 31
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=97.72 E-value=1.7e-05 Score=85.08 Aligned_cols=54 Identities=15% Similarity=0.173 Sum_probs=47.1
Q ss_pred CccccccccccchhhHHHhhhhhccCCceeecccccchhcccccccccCCCCCCC
Q 006634 311 PYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRF 365 (637)
Q Consensus 311 pfF~yeNV~~~~~~~w~~IsrfL~~i~Pe~vds~~fsaa~R~Rgy~hNLP~~~R~ 365 (637)
.||++|||..|......+|.+||. +.+.+|||++|.+++|+|-||+|+|+++|.
T Consensus 280 ~~fv~ENV~gL~~~~~~~i~~~L~-v~~~VLnA~dyGVPQrRrRf~g~~~~~~~~ 333 (386)
T 2pv0_B 280 FFWMFVDNLVLNKEDLDVASRFLE-MEPVTIPDVHGGSLQNAVRVWSNIPAIRSR 333 (386)
T ss_dssp CEEEEEECSCSCHHHHHHHHHHTT-SCCCEEECCCSSSCCCEEEEEECSSSSSTT
T ss_pred cEEEEEechhhhhcchHHHHHHHc-CCeEEEEccccCccccccEEEEECCCcCCc
Confidence 377899999998888889999995 899999999997776666699999999873
No 32
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=97.56 E-value=0.00019 Score=67.49 Aligned_cols=78 Identities=21% Similarity=0.186 Sum_probs=59.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+-+|||++||.|++...+.+.|. ..++++|+++.+.+..+.+....+. ...++.+|+.++. +.||
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-----------~~~D 114 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN-----------SRVD 114 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC-----------CCCS
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHcC-----------CCCC
Confidence 457899999999999999999885 3588999999999888876543321 2234567776653 2699
Q ss_pred EEEEcCCCCCcC
Q 006634 583 FVICQNSVPQIP 594 (637)
Q Consensus 583 LVIGGpPCQ~FS 594 (637)
+|+..||+...+
T Consensus 115 ~v~~~~p~~~~~ 126 (207)
T 1wy7_A 115 IVIMNPPFGSQR 126 (207)
T ss_dssp EEEECCCCSSSS
T ss_pred EEEEcCCCcccc
Confidence 999999976554
No 33
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=97.54 E-value=0.00012 Score=76.36 Aligned_cols=85 Identities=15% Similarity=0.073 Sum_probs=62.0
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g--~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
.+.+|||||||.|++++.+.+.|. .|++||+++.+.+..+.+....+... ..++.+|+.++.. .+....+.
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~----~~~~~~~~ 225 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQ----REERRGST 225 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHH----HHHHHTCC
T ss_pred CCCcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHH----HHHhcCCC
Confidence 356899999999999999999986 47899999999999988765433221 2345677765422 11112357
Q ss_pred ccEEEEcCCCCCcC
Q 006634 581 IDFVICQNSVPQIP 594 (637)
Q Consensus 581 ~DLVIGGpPCQ~FS 594 (637)
||+|+..|||.+.+
T Consensus 226 fD~Ii~dPP~~~~~ 239 (332)
T 2igt_A 226 YDIILTDPPKFGRG 239 (332)
T ss_dssp BSEEEECCCSEEEC
T ss_pred ceEEEECCccccCC
Confidence 99999999997655
No 34
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=97.50 E-value=0.00011 Score=75.51 Aligned_cols=82 Identities=16% Similarity=0.123 Sum_probs=60.9
Q ss_pred cCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc
Q 006634 500 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL 578 (637)
Q Consensus 500 ~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~ 578 (637)
++..+-+|||+|||+|++++.+.+.|- .-|+++|+|+.+.+.++.+-...+-.+ ..++.+|.+++.. .
T Consensus 122 ~~~~g~~VlD~~aG~G~~~i~~a~~g~--~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~---------~ 190 (278)
T 3k6r_A 122 VAKPDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG---------E 190 (278)
T ss_dssp HCCTTCEEEETTCTTTTTTHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---------C
T ss_pred hcCCCCEEEEecCcCcHHHHHHHHhcC--CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc---------c
Confidence 345678999999999999998877774 247899999999999988765432222 1245677776543 2
Q ss_pred CCccEEEEcCCCCC
Q 006634 579 GSIDFVICQNSVPQ 592 (637)
Q Consensus 579 g~~DLVIGGpPCQ~ 592 (637)
+.+|.|+-++|+-.
T Consensus 191 ~~~D~Vi~~~p~~~ 204 (278)
T 3k6r_A 191 NIADRILMGYVVRT 204 (278)
T ss_dssp SCEEEEEECCCSSG
T ss_pred cCCCEEEECCCCcH
Confidence 46999999999754
No 35
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=97.49 E-value=0.00015 Score=72.99 Aligned_cols=80 Identities=16% Similarity=0.129 Sum_probs=61.3
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
+.+-+|||+|||.|++++.+.+.|.. .|+++|+++.+.+..+.+....+... ..++.+|+.++.. .+.
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~---------~~~ 192 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG---------ENI 192 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---------CSC
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc---------cCC
Confidence 34678999999999999999998864 57899999999998887765433222 2256778876653 247
Q ss_pred ccEEEEcCCCCC
Q 006634 581 IDFVICQNSVPQ 592 (637)
Q Consensus 581 ~DLVIGGpPCQ~ 592 (637)
||+|+..+|+..
T Consensus 193 fD~Vi~~~p~~~ 204 (278)
T 2frn_A 193 ADRILMGYVVRT 204 (278)
T ss_dssp EEEEEECCCSSG
T ss_pred ccEEEECCchhH
Confidence 999999999653
No 36
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=97.43 E-value=0.00019 Score=69.20 Aligned_cols=81 Identities=17% Similarity=0.176 Sum_probs=61.6
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+.+|||+.||.|++.+.|.+.|. .|+++|+++.+.+..+.+....+. ....++.+|+.++. ..+.|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---------~~~~~ 145 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTGM---RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA---------SFLKA 145 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG---------GGCCC
T ss_pred CCCEEEECccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc---------ccCCC
Confidence 467899999999999999999984 478999999999888876654321 11224566766543 12579
Q ss_pred cEEEEcCCCCCcCc
Q 006634 582 DFVICQNSVPQIPN 595 (637)
Q Consensus 582 DLVIGGpPCQ~FS~ 595 (637)
|+|+..+||..+..
T Consensus 146 D~v~~~~~~~~~~~ 159 (241)
T 3gdh_A 146 DVVFLSPPWGGPDY 159 (241)
T ss_dssp SEEEECCCCSSGGG
T ss_pred CEEEECCCcCCcch
Confidence 99999999998764
No 37
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=97.38 E-value=0.00022 Score=84.70 Aligned_cols=48 Identities=6% Similarity=-0.023 Sum_probs=38.8
Q ss_pred cccCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhhcc
Q 006634 447 KLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSV 496 (637)
Q Consensus 447 ~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lgnsfqvdtv~~~lsv 496 (637)
+.++|++-|..||+|||++|... -+.+++++.+||+.-+.....+...
T Consensus 946 ~~R~lt~rE~arlQ~fPd~~~f~--g~~~~~~~qiGNaVp~~~~~~i~~~ 993 (1002)
T 3swr_A 946 QHRVVSVRECARSQGFPDTYRLF--GNILDKHRQVGNAVPPPLAKAIGLE 993 (1002)
T ss_dssp SSSBCCHHHHHHHTTCCTTCCCC--SSHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred cccCCCHHHHHHhCCCCcceEEc--CChHHHheeeeccCCHHHHHHHHHH
Confidence 55889999999999999999885 4788999999999876654444333
No 38
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=97.33 E-value=0.00045 Score=71.68 Aligned_cols=76 Identities=13% Similarity=0.164 Sum_probs=56.3
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
..+-+|||||||+|++++. .+ |. ..|+++|+++.+.+..+.+....+.. ...++.+|+.++. +.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~-~~--~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~-----------~~ 258 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK-NA--KKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD-----------VK 258 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT-TS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC-----------CC
T ss_pred CCCCEEEEccCccCHHHHh-cc-CC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc-----------CC
Confidence 3567899999999999888 55 42 45889999999999988876543321 2235567776543 47
Q ss_pred ccEEEEcCCCCC
Q 006634 581 IDFVICQNSVPQ 592 (637)
Q Consensus 581 ~DLVIGGpPCQ~ 592 (637)
||+|+..||...
T Consensus 259 fD~Vi~dpP~~~ 270 (336)
T 2yx1_A 259 GNRVIMNLPKFA 270 (336)
T ss_dssp EEEEEECCTTTG
T ss_pred CcEEEECCcHhH
Confidence 999999988654
No 39
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=97.25 E-value=0.00048 Score=62.04 Aligned_cols=83 Identities=16% Similarity=0.213 Sum_probs=58.4
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006634 501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
++.+-+|||+.||.|.+...+.+.|.. ++++|+++.+.+..+.+....+. ...+..+|+.+.. .......+.
T Consensus 39 ~~~~~~vLD~GcG~G~~~~~l~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~----~~~~~~~~~ 110 (171)
T 1ws6_A 39 YPRRGRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFL----PEAKAQGER 110 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHH----HHHHHTTCC
T ss_pred ccCCCeEEEeCCCcCHHHHHHHHCCCe---EEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHH----HhhhccCCc
Confidence 435678999999999999999999864 89999999999888876654322 2234556665421 111111236
Q ss_pred ccEEEEcCCCC
Q 006634 581 IDFVICQNSVP 591 (637)
Q Consensus 581 ~DLVIGGpPCQ 591 (637)
+|+|+..+|..
T Consensus 111 ~D~i~~~~~~~ 121 (171)
T 1ws6_A 111 FTVAFMAPPYA 121 (171)
T ss_dssp EEEEEECCCTT
T ss_pred eEEEEECCCCc
Confidence 99999988864
No 40
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=97.22 E-value=0.00035 Score=74.69 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=56.7
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+-+|||+|||.|++++.+.+.|. + |++||+++.+.+..+.+....+... .+..+|+.++- . ...+.||
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga--~-V~avDis~~al~~a~~n~~~ng~~~-~~~~~D~~~~l----~---~~~~~fD 282 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGA--Y-ALAVDKDLEALGVLDQAALRLGLRV-DIRHGEALPTL----R---GLEGPFH 282 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTC--E-EEEEESCHHHHHHHHHHHHHHTCCC-EEEESCHHHHH----H---TCCCCEE
T ss_pred CCCeEEEcccchhHHHHHHHHcCC--e-EEEEECCHHHHHHHHHHHHHhCCCC-cEEEccHHHHH----H---HhcCCCC
Confidence 477999999999999999999886 3 8999999999998888765443222 23355554321 1 1124599
Q ss_pred EEEEcCCC
Q 006634 583 FVICQNSV 590 (637)
Q Consensus 583 LVIGGpPC 590 (637)
+|+.-|||
T Consensus 283 ~Ii~dpP~ 290 (393)
T 4dmg_A 283 HVLLDPPT 290 (393)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 99999999
No 41
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=97.20 E-value=0.00031 Score=65.52 Aligned_cols=81 Identities=19% Similarity=0.354 Sum_probs=58.1
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+-+||||+||.|++.+.+...|. ..|+++|+++.+.+..+.+....+.....++.+|+.++... + ..+.||
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~--~~~~fD 115 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSRGA--ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAA----G--TTSPVD 115 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHH----C--CSSCCS
T ss_pred CCCEEEEeCCCcCHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhh----c--cCCCcc
Confidence 457899999999999997777775 35889999999999888876554322223456676543210 0 135799
Q ss_pred EEEEcCCCC
Q 006634 583 FVICQNSVP 591 (637)
Q Consensus 583 LVIGGpPCQ 591 (637)
+|+..+|..
T Consensus 116 ~i~~~~p~~ 124 (189)
T 3p9n_A 116 LVLADPPYN 124 (189)
T ss_dssp EEEECCCTT
T ss_pred EEEECCCCC
Confidence 999998854
No 42
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=97.19 E-value=0.00069 Score=68.04 Aligned_cols=80 Identities=19% Similarity=0.132 Sum_probs=59.7
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006634 501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
+..+-+|||||||+|++++.+.+.+-. ..|+++|+++.+.+..+.+....+.....++.+|+.++ .. .+.
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~-~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~--------~~~ 186 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKP-KLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-EL--------KDV 186 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCC-SEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CC--------TTC
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-Cc--------cCC
Confidence 345678999999999999998876422 25789999999999888876543322334667888776 32 247
Q ss_pred ccEEEEcCCC
Q 006634 581 IDFVICQNSV 590 (637)
Q Consensus 581 ~DLVIGGpPC 590 (637)
+|+|+-.+|.
T Consensus 187 ~D~Vi~d~p~ 196 (272)
T 3a27_A 187 ADRVIMGYVH 196 (272)
T ss_dssp EEEEEECCCS
T ss_pred ceEEEECCcc
Confidence 9999999996
No 43
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=97.17 E-value=0.00051 Score=65.49 Aligned_cols=77 Identities=14% Similarity=0.106 Sum_probs=55.3
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 583 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 583 (637)
+.+||||+||.|.+++.+.+.|. ..|++||+++.+.+..+.+....+.....++.+|+.++.. ...+.||+
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~--~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~-------~~~~~fD~ 125 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLA-------QKGTPHNI 125 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHS-------SCCCCEEE
T ss_pred CCeEEEeCCCcCHHHHHHHhcCC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHh-------hcCCCCCE
Confidence 56899999999999998777775 3588999999999998887654432122244566544211 12257999
Q ss_pred EEEcCC
Q 006634 584 VICQNS 589 (637)
Q Consensus 584 VIGGpP 589 (637)
|+..+|
T Consensus 126 V~~~~p 131 (202)
T 2fpo_A 126 VFVDPP 131 (202)
T ss_dssp EEECCS
T ss_pred EEECCC
Confidence 999888
No 44
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=97.16 E-value=0.00057 Score=72.37 Aligned_cols=86 Identities=16% Similarity=0.174 Sum_probs=60.1
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC--CCccccccccccChhhHHHhhhccCC
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~--g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
.+-+|||||||.|++++.+.+.|. ..|++||+++.+.+..+.+....+.. ...++.+|+.++ +..+......
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~ga--~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~----l~~~~~~~~~ 285 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDY----FKYARRHHLT 285 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHH----HHHHHHTTCC
T ss_pred CCCeEEEEeeccCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHH----HHHHHHhCCC
Confidence 457899999999999999988875 35889999999999888877544322 223456676542 2222112347
Q ss_pred ccEEEEcCCCCCcC
Q 006634 581 IDFVICQNSVPQIP 594 (637)
Q Consensus 581 ~DLVIGGpPCQ~FS 594 (637)
||+|+.-||+-+.+
T Consensus 286 fD~Ii~DPP~~~~~ 299 (385)
T 2b78_A 286 YDIIIIDPPSFARN 299 (385)
T ss_dssp EEEEEECCCCC---
T ss_pred ccEEEECCCCCCCC
Confidence 99999999986443
No 45
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=97.10 E-value=0.00055 Score=65.20 Aligned_cols=79 Identities=16% Similarity=0.085 Sum_probs=55.3
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCC--CCCccccccccccChhhHHHhhhccCC-
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ--TGELVQIEDIQALTTKKFESLIHKLGS- 580 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~--~g~l~~~~DI~~Lt~~~Ie~l~~~~g~- 580 (637)
+.+||||+||.|++++.+...|. ..|+++|+++.+.+..+.+....+. ....++.+|+.++... ...+.
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~ 125 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQ------PQNQPH 125 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTS------CCSSCC
T ss_pred CCeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHh------hccCCC
Confidence 56899999999999998777775 3588999999999988877654322 1222445665543210 01246
Q ss_pred ccEEEEcCCC
Q 006634 581 IDFVICQNSV 590 (637)
Q Consensus 581 ~DLVIGGpPC 590 (637)
||+|+..+|.
T Consensus 126 fD~I~~~~~~ 135 (201)
T 2ift_A 126 FDVVFLDPPF 135 (201)
T ss_dssp EEEEEECCCS
T ss_pred CCEEEECCCC
Confidence 9999999883
No 46
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=97.08 E-value=0.00098 Score=70.26 Aligned_cols=86 Identities=20% Similarity=0.138 Sum_probs=61.0
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+-+|||||||+|++++.+.+.|. ..|++||+++.+.+..+.+....+.. ...++.+|+.++.. .+....+.|
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~--~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~----~~~~~~~~f 290 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGA--DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEME----KLQKKGEKF 290 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH----HHHHTTCCE
T ss_pred CCCeEEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHH----HHHhhCCCC
Confidence 567899999999999999998875 45899999999999888877543221 12245566654321 111123579
Q ss_pred cEEEEcCCCCCcC
Q 006634 582 DFVICQNSVPQIP 594 (637)
Q Consensus 582 DLVIGGpPCQ~FS 594 (637)
|+|+.-||+-..+
T Consensus 291 D~Vi~dpP~~~~~ 303 (396)
T 2as0_A 291 DIVVLDPPAFVQH 303 (396)
T ss_dssp EEEEECCCCSCSS
T ss_pred CEEEECCCCCCCC
Confidence 9999999985544
No 47
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=97.06 E-value=0.00061 Score=68.28 Aligned_cols=87 Identities=16% Similarity=0.186 Sum_probs=57.8
Q ss_pred CCCcccccCCCCChHHHHHHHc--CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a--Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
.+.+|||++||.||.+..+.++ |- ..|+++|+++...+.++.+....+.....+..+|+.++... +....+.
T Consensus 83 ~g~~VLDlgaG~G~~t~~la~~~~~~--~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~----~~~~~~~ 156 (274)
T 3ajd_A 83 EDDFILDMCAAPGGKTTHLAQLMKNK--GTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDY----LLKNEIF 156 (274)
T ss_dssp TTCEEEETTCTTCHHHHHHHHHTTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHH----HHHTTCC
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCC--CEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchh----hhhcccc
Confidence 4678999999999999888763 31 24789999999998888776544322233445666544211 0011357
Q ss_pred ccEEEEcCCCCCcCc
Q 006634 581 IDFVICQNSVPQIPN 595 (637)
Q Consensus 581 ~DLVIGGpPCQ~FS~ 595 (637)
||+|+..+||.++..
T Consensus 157 fD~Vl~d~Pcs~~g~ 171 (274)
T 3ajd_A 157 FDKILLDAPCSGNII 171 (274)
T ss_dssp EEEEEEEECCC----
T ss_pred CCEEEEcCCCCCCcc
Confidence 999999999998764
No 48
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=96.99 E-value=0.0013 Score=61.65 Aligned_cols=74 Identities=19% Similarity=0.241 Sum_probs=55.4
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+-+|||++||.|++...+.+.|. ..++++|+++.+....+.+.. ...++.+|+.++. +.||
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~~-----------~~~D 112 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLGA--ESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS-----------GKYD 112 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTB--SEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC-----------CCEE
T ss_pred CCCEEEEEeCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHCC-----------CCee
Confidence 457899999999999999998875 358999999999888876532 2235677877653 3799
Q ss_pred EEEEcCCCCCcC
Q 006634 583 FVICQNSVPQIP 594 (637)
Q Consensus 583 LVIGGpPCQ~FS 594 (637)
+|+..||-..+.
T Consensus 113 ~v~~~~p~~~~~ 124 (200)
T 1ne2_A 113 TWIMNPPFGSVV 124 (200)
T ss_dssp EEEECCCC----
T ss_pred EEEECCCchhcc
Confidence 999998866544
No 49
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=96.95 E-value=0.00097 Score=69.93 Aligned_cols=84 Identities=10% Similarity=0.060 Sum_probs=58.5
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhc------
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK------ 577 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~------ 577 (637)
+-+|||||||+|++++.+.+.+ .-|++||+++.+.+..+.+....+.....++.+|+.++.. .+...
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~---~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~----~~~~~~~~~~l 286 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF---DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQ----AMNGVREFNRL 286 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS---SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHH----HHSSCCCCTTG
T ss_pred CCEEEEccCCCCHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHH----HHhhccccccc
Confidence 4579999999999999888744 3588999999999988887654332223345667654321 11110
Q ss_pred ------cCCccEEEEcCCCCCcC
Q 006634 578 ------LGSIDFVICQNSVPQIP 594 (637)
Q Consensus 578 ------~g~~DLVIGGpPCQ~FS 594 (637)
.+.||+|+--||+.+..
T Consensus 287 ~~~~~~~~~fD~Vv~dPPr~g~~ 309 (369)
T 3bt7_A 287 QGIDLKSYQCETIFVDPPRSGLD 309 (369)
T ss_dssp GGSCGGGCCEEEEEECCCTTCCC
T ss_pred cccccccCCCCEEEECcCccccH
Confidence 02699999999987653
No 50
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.92 E-value=0.00079 Score=54.84 Aligned_cols=42 Identities=19% Similarity=0.278 Sum_probs=37.4
Q ss_pred chhhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhh
Q 006634 75 GLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 118 (637)
Q Consensus 75 s~~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q 118 (637)
.+..+.+..|+.|||+++.+.+|++.+|.+ ++..+|.|+++.
T Consensus 17 ~se~e~V~~LvsMGFs~~qA~kALKat~~N--vErAaDWLFSH~ 58 (63)
T 1wgn_A 17 PSERQCVETVVNMGYSYECVLRAMKKKGEN--IEQILDYLFAHS 58 (63)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHCSC--HHHHHHHHHHHS
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence 355667899999999999999999999986 699999999984
No 51
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=96.87 E-value=0.0023 Score=60.97 Aligned_cols=83 Identities=14% Similarity=0.153 Sum_probs=58.8
Q ss_pred CCCCCcccccCCC-CChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 006634 501 FPGGLTMLSVFSG-IGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL 578 (637)
Q Consensus 501 f~~~l~vLsLFSG-iGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~ 578 (637)
.+.+.+|||+.|| .|.+.+.+.+. +. .++++|+++.+.+..+.+....+. ...++.+|+..+.. + ..
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~--~-----~~ 121 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFFNC---KVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIKG--V-----VE 121 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSSTT--T-----CC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhhh--c-----cc
Confidence 3467899999999 99999999887 54 478999999999888876654332 23345677654332 1 12
Q ss_pred CCccEEEEcCCCCCcC
Q 006634 579 GSIDFVICQNSVPQIP 594 (637)
Q Consensus 579 g~~DLVIGGpPCQ~FS 594 (637)
+.||+|+.-||+-...
T Consensus 122 ~~fD~I~~npp~~~~~ 137 (230)
T 3evz_A 122 GTFDVIFSAPPYYDKP 137 (230)
T ss_dssp SCEEEEEECCCCC---
T ss_pred CceeEEEECCCCcCCc
Confidence 5799999999986654
No 52
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=96.87 E-value=0.0018 Score=68.09 Aligned_cols=85 Identities=20% Similarity=0.129 Sum_probs=60.0
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+-+|||+|||.|++++.+.+.+ .-|+++|+++.+....+.+....+.....++.+|+.++.. .+....+.||
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~----~~~~~~~~fD 281 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLR----RLEKEGERFD 281 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHH----HHHHTTCCEE
T ss_pred CCCeEEEeeeccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHH----HHHhcCCCee
Confidence 45789999999999999988763 4688999999999988877654332223345666654321 1211235799
Q ss_pred EEEEcCCCCCcC
Q 006634 583 FVICQNSVPQIP 594 (637)
Q Consensus 583 LVIGGpPCQ~FS 594 (637)
+|+.-||+-..+
T Consensus 282 ~Ii~dpP~~~~~ 293 (382)
T 1wxx_A 282 LVVLDPPAFAKG 293 (382)
T ss_dssp EEEECCCCSCCS
T ss_pred EEEECCCCCCCC
Confidence 999999985544
No 53
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=96.82 E-value=0.0025 Score=58.21 Aligned_cols=81 Identities=19% Similarity=0.226 Sum_probs=55.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+-+|||+.||.|++...+.+.|. ..++++|+++.+.+..+.+....+.. ...++.+|+.+... .+....+.|
T Consensus 44 ~~~~vLD~GcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~~~f 117 (187)
T 2fhp_A 44 DGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALE----QFYEEKLQF 117 (187)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHH----HHHHTTCCE
T ss_pred CCCCEEEeCCccCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHH----HHHhcCCCC
Confidence 356899999999999998777764 35789999999988888766543211 12245566654321 111123579
Q ss_pred cEEEEcCC
Q 006634 582 DFVICQNS 589 (637)
Q Consensus 582 DLVIGGpP 589 (637)
|+|+..+|
T Consensus 118 D~i~~~~~ 125 (187)
T 2fhp_A 118 DLVLLDPP 125 (187)
T ss_dssp EEEEECCC
T ss_pred CEEEECCC
Confidence 99998877
No 54
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=96.76 E-value=0.0024 Score=62.92 Aligned_cols=83 Identities=16% Similarity=0.121 Sum_probs=59.9
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+.+|||+.||.|++.+.+.+.+-. .++++|+++.+....+.+....+... ..++.+|+.++... + ..+.|
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~-~-----~~~~f 120 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDL-I-----PKERA 120 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGT-S-----CTTCE
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhh-h-----ccCCc
Confidence 4678999999999999999888742 57899999999988887765443222 23566788765421 0 13579
Q ss_pred cEEEEcCCCCCc
Q 006634 582 DFVICQNSVPQI 593 (637)
Q Consensus 582 DLVIGGpPCQ~F 593 (637)
|+|+.-||+-..
T Consensus 121 D~Ii~npPy~~~ 132 (259)
T 3lpm_A 121 DIVTCNPPYFAT 132 (259)
T ss_dssp EEEEECCCC---
T ss_pred cEEEECCCCCCC
Confidence 999999998766
No 55
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=96.74 E-value=0.0024 Score=60.01 Aligned_cols=87 Identities=18% Similarity=0.197 Sum_probs=61.7
Q ss_pred hccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHH
Q 006634 494 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES 573 (637)
Q Consensus 494 lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~ 573 (637)
+..|..+.+.+.+|||+.||.|.+...+.+.|. ..++++|+++.+.+..+.+....+.....+..+|+.+..
T Consensus 51 ~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------ 122 (205)
T 3grz_A 51 MLGIERAMVKPLTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV------ 122 (205)
T ss_dssp HHHHHHHCSSCCEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC------
T ss_pred HHHHHHhccCCCEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC------
Confidence 333444445678999999999999999999875 357899999999888877655433222334566665432
Q ss_pred hhhccCCccEEEEcCCCCC
Q 006634 574 LIHKLGSIDFVICQNSVPQ 592 (637)
Q Consensus 574 l~~~~g~~DLVIGGpPCQ~ 592 (637)
.+.+|+|+..+|.+.
T Consensus 123 ----~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 123 ----DGKFDLIVANILAEI 137 (205)
T ss_dssp ----CSCEEEEEEESCHHH
T ss_pred ----CCCceEEEECCcHHH
Confidence 257999999887654
No 56
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=96.73 E-value=0.0022 Score=78.13 Aligned_cols=50 Identities=18% Similarity=0.250 Sum_probs=40.4
Q ss_pred CCCCccccccccccch----hhHHHhhhhh----ccCCceeeccccc-chhcccccccc
Q 006634 308 AQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLH 357 (637)
Q Consensus 308 ~~ppfF~yeNV~~~~~----~~w~~IsrfL----~~i~Pe~vds~~f-saa~R~Rgy~h 357 (637)
.+|.||++|||..+-. ..+..|.+.| |.|...++||..| .||+|.|.|+=
T Consensus 971 ~rPk~fv~ENV~glls~~~g~~~~~il~~L~~lGY~v~~~vLnA~dyGVPQ~R~Rvfiv 1029 (1330)
T 3av4_A 971 YRPRFFLLENVRNFVSYRRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIIL 1029 (1330)
T ss_dssp HCCSEEEEEEEGGGGTTTTTHHHHHHHHHHHHHTCEEEEEEEEGGGGSCSBCCEEEEEE
T ss_pred hcCcEEEEeccHHHhccCccHHHHHHHHHHHhcCCeeeEEEecHHHcCCCccccEEEEE
Confidence 5799999999999853 2455565554 6788999999999 99999999963
No 57
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=96.69 E-value=0.0036 Score=64.28 Aligned_cols=85 Identities=11% Similarity=0.028 Sum_probs=61.4
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+.+|||+.||.||.+..+.+..-.--.|+++|+++...+..+.+....+.....++.+|+.++.. ..+.||
T Consensus 118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~--------~~~~fD 189 (315)
T 1ixk_A 118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE--------LNVEFD 189 (315)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG--------GCCCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccc--------ccccCC
Confidence 467899999999999998876521112478999999998888877654432223355677766532 124799
Q ss_pred EEEEcCCCCCcCc
Q 006634 583 FVICQNSVPQIPN 595 (637)
Q Consensus 583 LVIGGpPCQ~FS~ 595 (637)
+|+--+||.+...
T Consensus 190 ~Il~d~Pcsg~g~ 202 (315)
T 1ixk_A 190 KILLDAPCTGSGT 202 (315)
T ss_dssp EEEEECCTTSTTT
T ss_pred EEEEeCCCCCccc
Confidence 9999999988764
No 58
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=96.68 E-value=0.0015 Score=60.65 Aligned_cols=87 Identities=14% Similarity=0.043 Sum_probs=47.4
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
+.+.+|||+.||.|.+...+.+.+-. ..++++|+++.+.+..+.+....+. ...+..+|+.+ .+.......+.|
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~----~~~~~~~~~~~f 102 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPG-VSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIE----WLIERAERGRPW 102 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTT-EEEEEEECC--------------------CCHHHHHH----HHHHHHHTTCCB
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHh----hhhhhhhccCcc
Confidence 45789999999999999999988532 2578999999988877665432211 12234556554 111111123689
Q ss_pred cEEEEcCCCCCcC
Q 006634 582 DFVICQNSVPQIP 594 (637)
Q Consensus 582 DLVIGGpPCQ~FS 594 (637)
|+|+..||+-...
T Consensus 103 D~i~~npp~~~~~ 115 (215)
T 4dzr_A 103 HAIVSNPPYIPTG 115 (215)
T ss_dssp SEEEECCCCCC--
T ss_pred cEEEECCCCCCCc
Confidence 9999999986554
No 59
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=96.59 E-value=0.0036 Score=67.43 Aligned_cols=78 Identities=19% Similarity=0.308 Sum_probs=59.2
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
..+-+|||||||.|.+++.|.+.+. -|+++|+++.+.+..+.+....+.. ..++.+|+.++... .|
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~~~---~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~----------~f 354 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKRGF---NVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVK----------GF 354 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCT----------TC
T ss_pred CCCCEEEEeeccchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCcc----------CC
Confidence 3567899999999999999988764 4789999999998888776543322 34567787765421 58
Q ss_pred cEEEEcCCCCCc
Q 006634 582 DFVICQNSVPQI 593 (637)
Q Consensus 582 DLVIGGpPCQ~F 593 (637)
|+|+--||..+.
T Consensus 355 D~Vv~dPPr~g~ 366 (425)
T 2jjq_A 355 DTVIVDPPRAGL 366 (425)
T ss_dssp SEEEECCCTTCS
T ss_pred CEEEEcCCccch
Confidence 999999986544
No 60
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=96.57 E-value=0.0045 Score=63.97 Aligned_cols=87 Identities=10% Similarity=0.155 Sum_probs=60.8
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+-+|||++||.||.++.+..+ +=. -.|+++|+++...+.++.+....+.....++.+|..++.... ..++.|
T Consensus 102 ~g~~VLDlcaG~G~kt~~la~~~~~~-g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~-----~~~~~f 175 (309)
T 2b9e_A 102 PGSHVIDACAAPGNKTSHLAALLKNQ-GKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSD-----PRYHEV 175 (309)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTC-----GGGTTE
T ss_pred CCCEEEEeCCChhHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccc-----cccCCC
Confidence 4678999999999999887763 211 247899999999999988776543222335567877664321 113579
Q ss_pred cEEEEcCCCCCcCc
Q 006634 582 DFVICQNSVPQIPN 595 (637)
Q Consensus 582 DLVIGGpPCQ~FS~ 595 (637)
|+|+--+||.++..
T Consensus 176 D~Vl~D~PcSg~G~ 189 (309)
T 2b9e_A 176 HYILLDPSCSGSGM 189 (309)
T ss_dssp EEEEECCCCCC---
T ss_pred CEEEEcCCcCCCCC
Confidence 99999999998875
No 61
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=96.54 E-value=0.0042 Score=57.18 Aligned_cols=84 Identities=13% Similarity=0.104 Sum_probs=56.8
Q ss_pred ccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh
Q 006634 497 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH 576 (637)
Q Consensus 497 LK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~ 576 (637)
++...+.+-+|||+.||.|.++..|.+.|. .|+++|+++.+....+.+....+.....++..|+..+.. .
T Consensus 16 l~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~-----~-- 85 (185)
T 3mti_A 16 LAEVLDDESIVVDATMGNGNDTAFLAGLSK---KVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDH-----Y-- 85 (185)
T ss_dssp HHTTCCTTCEEEESCCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGG-----T--
T ss_pred HHHhCCCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHh-----h--
Confidence 445556678999999999999999998865 478999999998888776654322112233345544321 1
Q ss_pred ccCCccEEEEcCCC
Q 006634 577 KLGSIDFVICQNSV 590 (637)
Q Consensus 577 ~~g~~DLVIGGpPC 590 (637)
..+.||+|+..+|.
T Consensus 86 ~~~~fD~v~~~~~~ 99 (185)
T 3mti_A 86 VREPIRAAIFNLGY 99 (185)
T ss_dssp CCSCEEEEEEEEC-
T ss_pred ccCCcCEEEEeCCC
Confidence 12579999877543
No 62
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=96.54 E-value=0.0056 Score=64.33 Aligned_cols=80 Identities=19% Similarity=0.125 Sum_probs=58.6
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
+.+.+|||++||.|++.+.+.+.|.. ..++++|+++.+.+..+.+....+.. ...+..+|+.++.. ..+.
T Consensus 216 ~~~~~vLD~gCGsG~~~i~~a~~~~~-~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~--------~~~~ 286 (373)
T 3tm4_A 216 LDGGSVLDPMCGSGTILIELALRRYS-GEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQ--------YVDS 286 (373)
T ss_dssp CCSCCEEETTCTTCHHHHHHHHTTCC-SCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGG--------TCSC
T ss_pred CCCCEEEEccCcCcHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCc--------ccCC
Confidence 45678999999999999999888752 24789999999998888876544321 12345677766532 1257
Q ss_pred ccEEEEcCCC
Q 006634 581 IDFVICQNSV 590 (637)
Q Consensus 581 ~DLVIGGpPC 590 (637)
+|+|+.-||.
T Consensus 287 fD~Ii~npPy 296 (373)
T 3tm4_A 287 VDFAISNLPY 296 (373)
T ss_dssp EEEEEEECCC
T ss_pred cCEEEECCCC
Confidence 9999998884
No 63
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=96.53 E-value=0.0048 Score=60.09 Aligned_cols=86 Identities=13% Similarity=0.030 Sum_probs=55.7
Q ss_pred CCCcccccCCCCChHHHHHHHc--CCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhc-c
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK-L 578 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a--Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~-~ 578 (637)
.+.+||||.||.|++...+.+. +. .++++|+++.+.+..+.+....+... ..++.+|+.+.-.+.+. .. .
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~---~~~~ 138 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGW---YFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALK---EESE 138 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTST---TCCS
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhh---cccC
Confidence 4678999999999988777654 43 47899999999988887665433222 23456776552101111 00 1
Q ss_pred CCccEEEEcCCCCCcC
Q 006634 579 GSIDFVICQNSVPQIP 594 (637)
Q Consensus 579 g~~DLVIGGpPCQ~FS 594 (637)
+.||+|+..||+-...
T Consensus 139 ~~fD~i~~npp~~~~~ 154 (254)
T 2h00_A 139 IIYDFCMCNPPFFANQ 154 (254)
T ss_dssp CCBSEEEECCCCC---
T ss_pred CcccEEEECCCCccCc
Confidence 4699999999987554
No 64
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=96.52 E-value=0.0028 Score=68.02 Aligned_cols=80 Identities=9% Similarity=0.015 Sum_probs=55.1
Q ss_pred CCCcccccCCCCChHHHHHHHc--CCceeeEEEeecCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhh-c
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIH-K 577 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a--Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g--~l~~~~DI~~Lt~~~Ie~l~~-~ 577 (637)
.+.+|||||||+|++++-+.+. |. .-|++||+++.+.+.++.+....+-.. ..++.+|+.++ +. .
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga--~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~--------l~~~ 121 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCV--EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFF--------LRKE 121 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCE--EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH--------HHSC
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHH--------HHHh
Confidence 4678999999999998866552 43 458999999999999998875432211 22344554332 22 1
Q ss_pred -cCCccEEEEcCCCCC
Q 006634 578 -LGSIDFVICQNSVPQ 592 (637)
Q Consensus 578 -~g~~DLVIGGpPCQ~ 592 (637)
.+.||+|+--|||..
T Consensus 122 ~~~~fD~V~lDP~g~~ 137 (392)
T 3axs_A 122 WGFGFDYVDLDPFGTP 137 (392)
T ss_dssp CSSCEEEEEECCSSCC
T ss_pred hCCCCcEEEECCCcCH
Confidence 246999999988763
No 65
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=96.47 E-value=0.0039 Score=46.57 Aligned_cols=38 Identities=24% Similarity=0.231 Sum_probs=32.6
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA 116 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a 116 (637)
..+.+..|+.|||+++.+.+|+..|+-+ ++.=+++|+.
T Consensus 4 ~e~~i~~L~~MGF~~~~a~~AL~~~~~n--~e~A~~~L~~ 41 (43)
T 2g3q_A 4 KSLAVEELSGMGFTEEEAHNALEKCNWD--LEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHTSC--HHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCcC--HHHHHHHHHc
Confidence 3567899999999999999999999753 5788888875
No 66
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=96.45 E-value=0.0046 Score=70.75 Aligned_cols=83 Identities=19% Similarity=0.187 Sum_probs=59.1
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC--CCccccccccccChhhHHHhhhccCC
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~--g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
.+-+|||||||.|++++.+.+.|. .-|++||+++.+....+.+....+.. ...++.+|+.++ +. ...+.
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga--~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~----l~---~~~~~ 609 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGA--RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAW----LR---EANEQ 609 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHH----HH---HCCCC
T ss_pred CCCcEEEeeechhHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH----HH---hcCCC
Confidence 467899999999999999988886 35889999999999988877544322 122345666542 11 12357
Q ss_pred ccEEEEcCCCCCcC
Q 006634 581 IDFVICQNSVPQIP 594 (637)
Q Consensus 581 ~DLVIGGpPCQ~FS 594 (637)
||+|+--|||-.-|
T Consensus 610 fD~Ii~DPP~f~~~ 623 (703)
T 3v97_A 610 FDLIFIDPPTFSNS 623 (703)
T ss_dssp EEEEEECCCSBC--
T ss_pred ccEEEECCccccCC
Confidence 99999999984333
No 67
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=96.44 E-value=0.0025 Score=65.02 Aligned_cols=100 Identities=16% Similarity=0.064 Sum_probs=62.5
Q ss_pred Hhhhhhhccc--chhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCC
Q 006634 479 ESLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE 556 (637)
Q Consensus 479 k~Lgnsfqvd--tv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~ 556 (637)
|.+|..|-++ .+...+..+.. ..+-+|||+.||.|.++..|.+.|. .|+++|+++......+......+....
T Consensus 18 k~~Gq~fl~~~~i~~~i~~~~~~--~~~~~VLDiG~G~G~lt~~La~~~~---~v~~vDi~~~~~~~a~~~~~~~~~~~v 92 (299)
T 2h1r_A 18 YFQGQHLLKNPGILDKIIYAAKI--KSSDIVLEIGCGTGNLTVKLLPLAK---KVITIDIDSRMISEVKKRCLYEGYNNL 92 (299)
T ss_dssp -----CEECCHHHHHHHHHHHCC--CTTCEEEEECCTTSTTHHHHTTTSS---EEEEECSCHHHHHHHHHHHHHTTCCCE
T ss_pred hccccceecCHHHHHHHHHhcCC--CCcCEEEEEcCcCcHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCCce
Confidence 3446666433 33444444321 3467899999999999999988874 478999999998888876543222223
Q ss_pred ccccccccccChhhHHHhhhccCCccEEEEcCCCCCc
Q 006634 557 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQI 593 (637)
Q Consensus 557 l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~F 593 (637)
.++.+|+.++. ++.+|+|++-+|++..
T Consensus 93 ~~~~~D~~~~~----------~~~~D~Vv~n~py~~~ 119 (299)
T 2h1r_A 93 EVYEGDAIKTV----------FPKFDVCTANIPYKIS 119 (299)
T ss_dssp EC----CCSSC----------CCCCSEEEEECCGGGH
T ss_pred EEEECchhhCC----------cccCCEEEEcCCcccc
Confidence 35667877654 2368999999997743
No 68
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=96.42 E-value=0.006 Score=63.08 Aligned_cols=80 Identities=15% Similarity=0.114 Sum_probs=57.9
Q ss_pred CCCcccccCCCCChHHHHHHHcC-CceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLG-IKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aG-i~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+.+|||+|||.|++.+-+...+ -. ..++++|+|+.+.+..+.+....+.....+..+|+.++.. ..+.+
T Consensus 203 ~~~~vLD~gcGsG~~~ie~a~~~~~~-~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~--------~~~~~ 273 (354)
T 3tma_A 203 PGMRVLDPFTGSGTIALEAASTLGPT-SPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPR--------FFPEV 273 (354)
T ss_dssp TTCCEEESSCTTSHHHHHHHHHHCTT-SCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGG--------TCCCC
T ss_pred CCCEEEeCCCCcCHHHHHHHHhhCCC-ceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcc--------ccCCC
Confidence 46789999999999988777654 11 2468999999999988887765432223356677776542 12458
Q ss_pred cEEEEcCCCC
Q 006634 582 DFVICQNSVP 591 (637)
Q Consensus 582 DLVIGGpPCQ 591 (637)
|+|+.-|||-
T Consensus 274 D~Ii~npPyg 283 (354)
T 3tma_A 274 DRILANPPHG 283 (354)
T ss_dssp SEEEECCCSC
T ss_pred CEEEECCCCc
Confidence 9999999973
No 69
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=96.42 E-value=0.0063 Score=61.67 Aligned_cols=81 Identities=16% Similarity=0.207 Sum_probs=58.9
Q ss_pred CCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006634 504 GLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
+.+|||+.||.|.+.+.+.+. +. .++++|+++.+.+..+.+....+... ..++.+|+.+.- . ..++.+
T Consensus 124 ~~~vLDlG~GsG~~~~~la~~~~~---~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~----~---~~f~~~ 193 (284)
T 1nv8_A 124 IKTVADIGTGSGAIGVSVAKFSDA---IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF----K---EKFASI 193 (284)
T ss_dssp CCEEEEESCTTSHHHHHHHHHSSC---EEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG----G---GGTTTC
T ss_pred CCEEEEEeCchhHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc----c---cccCCC
Confidence 468999999999999999887 43 57899999999998888765433222 235567776521 1 123344
Q ss_pred cEEEEcCCCCCcC
Q 006634 582 DFVICQNSVPQIP 594 (637)
Q Consensus 582 DLVIGGpPCQ~FS 594 (637)
|+|+.-|||-+..
T Consensus 194 D~IvsnPPyi~~~ 206 (284)
T 1nv8_A 194 EMILSNPPYVKSS 206 (284)
T ss_dssp CEEEECCCCBCGG
T ss_pred CEEEEcCCCCCcc
Confidence 9999999998776
No 70
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=96.41 E-value=0.0056 Score=55.95 Aligned_cols=79 Identities=15% Similarity=0.252 Sum_probs=55.0
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+-+|||++||.|.+...+.+.|. ..++++|+++.+.+..+.+....+... ..++.+|+.+. +. ...+.|
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~---~~~~~f 101 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA----ID---CLTGRF 101 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH----HH---HBCSCE
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHh----HH---hhcCCC
Confidence 456899999999999999888874 357899999999988887665432111 12345555432 11 122569
Q ss_pred cEEEEcCCC
Q 006634 582 DFVICQNSV 590 (637)
Q Consensus 582 DLVIGGpPC 590 (637)
|+|+..+|.
T Consensus 102 D~i~~~~~~ 110 (177)
T 2esr_A 102 DLVFLDPPY 110 (177)
T ss_dssp EEEEECCSS
T ss_pred CEEEECCCC
Confidence 999988774
No 71
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=96.41 E-value=0.0054 Score=60.95 Aligned_cols=82 Identities=9% Similarity=0.029 Sum_probs=58.1
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+.+|||+.||.|++.+.+...- +-..++++|+++.+.+..+.+....+.....+..+|+.+.- ..+.||
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~---------~~~~fD 178 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL---------AGQQFA 178 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG---------TTCCEE
T ss_pred CCCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhc---------ccCCcc
Confidence 45789999999999999887541 11247899999999998887765432222334556665421 125799
Q ss_pred EEEEcCCCCCcC
Q 006634 583 FVICQNSVPQIP 594 (637)
Q Consensus 583 LVIGGpPCQ~FS 594 (637)
+|+.-|||.+.+
T Consensus 179 ~Iv~npPy~~~~ 190 (276)
T 2b3t_A 179 MIVSNPPYIDEQ 190 (276)
T ss_dssp EEEECCCCBCTT
T ss_pred EEEECCCCCCcc
Confidence 999999998764
No 72
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.39 E-value=0.0023 Score=48.80 Aligned_cols=38 Identities=13% Similarity=0.188 Sum_probs=33.4
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA 117 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~ 117 (637)
..+++..|+.|||+++.+.+|+..+| + ++.-+++|+.+
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~~~--n-~e~A~~~L~~h 46 (47)
T 2ekk_A 9 NQQQLQQLMDMGFTREHAMEALLNTS--T-MEQATEYLLTH 46 (47)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHHHHSC--S-HHHHHHHHHTC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcC--C-HHHHHHHHHcC
Confidence 45688999999999999999999997 3 68999999864
No 73
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=96.38 E-value=0.0038 Score=52.40 Aligned_cols=42 Identities=21% Similarity=0.277 Sum_probs=36.4
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhh
Q 006634 76 LHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI 119 (637)
Q Consensus 76 ~~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~ 119 (637)
...+++..|+.|||++++|..|+..|+-+ ++.-+|+|+..+.
T Consensus 28 ~~ee~I~~L~eMGF~r~~a~~AL~~~~~n--ve~Ave~Ll~~~~ 69 (73)
T 1vg5_A 28 ASEEQIQKLVAMGFDRTQVEVALAAADDD--LTVAVEILMSQSG 69 (73)
T ss_dssp CCHHHHHHHHTTTCCHHHHHHHHHHHTSC--HHHHHHHHHTCSC
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHHCCC
Confidence 34678999999999999999999999974 6899999998653
No 74
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.34 E-value=0.0049 Score=47.64 Aligned_cols=40 Identities=13% Similarity=0.108 Sum_probs=34.7
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 006634 76 LHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA 117 (637)
Q Consensus 76 ~~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~ 117 (637)
...+++..|+.|||+++.|.+|+..+|-+ ++.-+++|++.
T Consensus 7 ~~~~~i~~L~~MGF~~~~a~~AL~~~~~n--~e~A~e~L~~g 46 (49)
T 1ify_A 7 EYETMLTEIMSMGYERERVVAALRASYNN--PHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHTTTSC--SHHHHHHHHHC
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHhC
Confidence 35678899999999999999999999974 47889999874
No 75
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.27 E-value=0.0045 Score=50.11 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=36.0
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhh
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI 119 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~ 119 (637)
..+++..|+.|||+++.+.+|+..++-+ ++.-+++|+..+.
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~t~~n--ve~A~e~L~~~~~ 49 (63)
T 2dak_A 9 PEDCVTTIVSMGFSRDQALKALRATNNS--LERAVDWIFSHID 49 (63)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTSC--SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCCC
Confidence 3567899999999999999999999874 6899999998754
No 76
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.26 E-value=0.0045 Score=50.47 Aligned_cols=40 Identities=20% Similarity=0.290 Sum_probs=35.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhh
Q 006634 79 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI 119 (637)
Q Consensus 79 ~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~ 119 (637)
+.+..|+.|||+++.|.+|+..+|..+ ++.-+++|+.++.
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~~~n-ve~A~ewLl~~~~ 50 (64)
T 1whc_A 11 TALESLIEMGFPRGRAEKALALTGNQG-IEAAMDWLMEHED 50 (64)
T ss_dssp CHHHHHHTTTCCHHHHHHHHHHHTSCC-HHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcCCC-HHHHHHHHHhCCC
Confidence 478899999999999999999998655 6999999998753
No 77
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=96.18 E-value=0.0084 Score=59.53 Aligned_cols=89 Identities=16% Similarity=0.068 Sum_probs=58.6
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhh---cCCCC-CccccccccccChhhHHHhhhcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES---SGQTG-ELVQIEDIQALTTKKFESLIHKL 578 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~---tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~ 578 (637)
.+.+||||.||.|.+.+.+.+.+-. ..+++||+++.+....+.+... .+... ..++.+|+.++....+... ...
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~~-~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~-~~~ 113 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLEK-AEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAG-LPD 113 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCTT-EEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTT-CCT
T ss_pred CCCEEEEeCChHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhc-cCC
Confidence 4578999999999999988876522 3578999999999888876543 22111 2356788877632211100 012
Q ss_pred CCccEEEEcCCCCCc
Q 006634 579 GSIDFVICQNSVPQI 593 (637)
Q Consensus 579 g~~DLVIGGpPCQ~F 593 (637)
+.||+|+.-||....
T Consensus 114 ~~fD~Vv~nPPy~~~ 128 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDA 128 (260)
T ss_dssp TCEEEEEECCCC---
T ss_pred CCcCEEEECCCCcCC
Confidence 579999999998765
No 78
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=96.17 E-value=0.0044 Score=67.67 Aligned_cols=85 Identities=18% Similarity=0.138 Sum_probs=59.4
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+.+|||++||.||.++.+..+ +=. -.|+++|+++...+.++.+....+.....+..+|..++. .. ..+.|
T Consensus 105 ~g~~VLDlcaGpGgkt~~lA~~~~~~-g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~-----~~--~~~~F 176 (456)
T 3m4x_A 105 PGEKVLDLCAAPGGKSTQLAAQMKGK-GLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELV-----PH--FSGFF 176 (456)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTC-SEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHH-----HH--HTTCE
T ss_pred CCCEEEEECCCcCHHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh-----hh--ccccC
Confidence 4679999999999999887654 211 147899999999999988765543222223345554332 11 12579
Q ss_pred cEEEEcCCCCCcCc
Q 006634 582 DFVICQNSVPQIPN 595 (637)
Q Consensus 582 DLVIGGpPCQ~FS~ 595 (637)
|+|+--+||.+...
T Consensus 177 D~Il~DaPCSg~G~ 190 (456)
T 3m4x_A 177 DRIVVDAPCSGEGM 190 (456)
T ss_dssp EEEEEECCCCCGGG
T ss_pred CEEEECCCCCCccc
Confidence 99999999998875
No 79
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=96.13 E-value=0.0055 Score=62.02 Aligned_cols=100 Identities=13% Similarity=0.064 Sum_probs=65.1
Q ss_pred Hhhhhhhccc--chhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCC-CC
Q 006634 479 ESLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TG 555 (637)
Q Consensus 479 k~Lgnsfqvd--tv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~-~g 555 (637)
|.+|..|-++ .+...+..+.. ..+-+|||+-||.|.++..|.+.|. .|+++|+|+.....++......+. ..
T Consensus 4 k~~gq~fl~d~~i~~~i~~~~~~--~~~~~VLDiG~G~G~lt~~L~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~ 78 (285)
T 1zq9_A 4 TGIGQHILKNPLIINSIIDKAAL--RPTDVVLEVGPGTGNMTVKLLEKAK---KVVACELDPRLVAELHKRVQGTPVASK 78 (285)
T ss_dssp ----CCEECCHHHHHHHHHHTCC--CTTCEEEEECCTTSTTHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTSTTGGG
T ss_pred CCCCcCccCCHHHHHHHHHhcCC--CCCCEEEEEcCcccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHhcCCCCc
Confidence 3455555322 33444444422 3457899999999999999998875 478999999998888776532211 12
Q ss_pred CccccccccccChhhHHHhhhccCCccEEEEcCCCCCc
Q 006634 556 ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQI 593 (637)
Q Consensus 556 ~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~F 593 (637)
..++.+|+.++. +..+|+|++..|++-.
T Consensus 79 v~~~~~D~~~~~----------~~~fD~vv~nlpy~~~ 106 (285)
T 1zq9_A 79 LQVLVGDVLKTD----------LPFFDTCVANLPYQIS 106 (285)
T ss_dssp EEEEESCTTTSC----------CCCCSEEEEECCGGGH
T ss_pred eEEEEcceeccc----------chhhcEEEEecCcccc
Confidence 235567877653 2368999999998753
No 80
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=96.10 E-value=0.0076 Score=65.10 Aligned_cols=79 Identities=13% Similarity=0.087 Sum_probs=57.9
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhc--CCCCCccccccccccChhhHHHhhhccCCc
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS--GQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~t--n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
+-+||||+||+|+.++.|.+.|. .|++||+|+.+....+.+.... +.....++.+|+.+.-.. + ..+.|
T Consensus 94 g~~VLDLgcG~G~~al~LA~~g~---~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~-~-----~~~~f 164 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSKAS---QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPL-I-----KTFHP 164 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTTCS---EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHH-H-----HHHCC
T ss_pred CCEEEEeCCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhh-c-----cCCCc
Confidence 68899999999999999999885 4789999999999998887643 221223566787654111 1 11379
Q ss_pred cEEEEcCCCC
Q 006634 582 DFVICQNSVP 591 (637)
Q Consensus 582 DLVIGGpPCQ 591 (637)
|+|+--||=.
T Consensus 165 DvV~lDPPrr 174 (410)
T 3ll7_A 165 DYIYVDPARR 174 (410)
T ss_dssp SEEEECCEEC
T ss_pred eEEEECCCCc
Confidence 9999888743
No 81
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.10 E-value=0.0081 Score=48.91 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=35.4
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhh
Q 006634 78 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI 119 (637)
Q Consensus 78 ~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~ 119 (637)
.+++..|+.|||+++.|.+|+..|+-+ ++.-+++|+..+.
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~~~~n--ve~A~e~L~~~~~ 49 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMDNGNN--LEAALNVLLTSNK 49 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTSC--HHHHHHHHHHHSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHHCCC
Confidence 467899999999999999999999874 6899999998754
No 82
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=96.09 E-value=0.013 Score=55.18 Aligned_cols=76 Identities=22% Similarity=0.323 Sum_probs=56.0
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
+.+.+|||+-||.|.+...+.+.|. .++++|+++......+.+....+ ....+..+|+.++.. ..+.+
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~--------~~~~~ 104 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSF--------EDKTF 104 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCS--------CTTCE
T ss_pred CCCCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcCCC--------CCCcE
Confidence 3468999999999999999999986 47899999998888777654332 233356677776531 12468
Q ss_pred cEEEEcCC
Q 006634 582 DFVICQNS 589 (637)
Q Consensus 582 DLVIGGpP 589 (637)
|+|+..++
T Consensus 105 D~v~~~~~ 112 (227)
T 1ve3_A 105 DYVIFIDS 112 (227)
T ss_dssp EEEEEESC
T ss_pred EEEEEcCc
Confidence 99987766
No 83
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=96.06 E-value=0.0064 Score=64.59 Aligned_cols=79 Identities=15% Similarity=0.122 Sum_probs=54.3
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhc---------------CCCCCcccccccccc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS---------------GQTGELVQIEDIQAL 566 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~t---------------n~~g~l~~~~DI~~L 566 (637)
.+.+|||||||+|++++.+... |- .-|+++|+++.+.+..+.+.... +.....++.+|+.++
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~--~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~ 124 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPA--EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRL 124 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSC--SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHH
Confidence 3678999999999999887665 53 23889999999999998877543 111112233444322
Q ss_pred ChhhHHHhhhc-cCCccEEEEcCCCC
Q 006634 567 TTKKFESLIHK-LGSIDFVICQNSVP 591 (637)
Q Consensus 567 t~~~Ie~l~~~-~g~~DLVIGGpPCQ 591 (637)
... .+.||+|+--|||.
T Consensus 125 --------~~~~~~~fD~I~lDP~~~ 142 (378)
T 2dul_A 125 --------MAERHRYFHFIDLDPFGS 142 (378)
T ss_dssp --------HHHSTTCEEEEEECCSSC
T ss_pred --------HHhccCCCCEEEeCCCCC
Confidence 211 24699999988886
No 84
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=96.03 E-value=0.0083 Score=65.70 Aligned_cols=85 Identities=16% Similarity=-0.005 Sum_probs=60.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+.+||||+||.||.++.+.++--.--.|+++|+++...+.++.+....+.. ..+..+|..++. .. ..+.||
T Consensus 101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~-----~~--~~~~FD 172 (464)
T 3m6w_A 101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALA-----EA--FGTYFH 172 (464)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHH-----HH--HCSCEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhh-----hh--ccccCC
Confidence 4689999999999999888754111114789999999999998876654333 334456655432 11 135799
Q ss_pred EEEEcCCCCCcCc
Q 006634 583 FVICQNSVPQIPN 595 (637)
Q Consensus 583 LVIGGpPCQ~FS~ 595 (637)
+|+--+||.+...
T Consensus 173 ~Il~D~PcSg~G~ 185 (464)
T 3m6w_A 173 RVLLDAPCSGEGM 185 (464)
T ss_dssp EEEEECCCCCGGG
T ss_pred EEEECCCcCCccc
Confidence 9999999998875
No 85
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=95.97 E-value=0.01 Score=65.01 Aligned_cols=85 Identities=9% Similarity=0.063 Sum_probs=60.6
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+.+|||++||.||.++.+.++ +-. -.|+++|+++...+.++.+....+.....+..+|..++.. . ..+.|
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~-g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~-----~--~~~~f 188 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNE-GAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGA-----A--VPEMF 188 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTC-SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHH-----H--STTCE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhh-----h--ccccC
Confidence 4679999999999999888764 211 2478999999999998887654432223345566665421 0 12479
Q ss_pred cEEEEcCCCCCcCc
Q 006634 582 DFVICQNSVPQIPN 595 (637)
Q Consensus 582 DLVIGGpPCQ~FS~ 595 (637)
|+|+--+||.+...
T Consensus 189 D~Il~D~PcSg~G~ 202 (479)
T 2frx_A 189 DAILLDAPCSGEGV 202 (479)
T ss_dssp EEEEEECCCCCGGG
T ss_pred CEEEECCCcCCccc
Confidence 99999999998764
No 86
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=95.97 E-value=0.013 Score=62.83 Aligned_cols=85 Identities=15% Similarity=0.119 Sum_probs=60.7
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+-+||||+||.|.+++.|.+.+. .|+++|+++.+.+..+.+....+.....++.+|+.+.-.. +....+.||
T Consensus 286 ~~~~VLDlgcG~G~~~~~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~----~~~~~~~fD 358 (433)
T 1uwv_A 286 PEDRVLDLFCGMGNFTLPLATQAA---SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK----QPWAKNGFD 358 (433)
T ss_dssp TTCEEEEESCTTTTTHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSS----SGGGTTCCS
T ss_pred CCCEEEECCCCCCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhh----hhhhcCCCC
Confidence 456899999999999999988854 4789999999998888776543322334567787663211 001124699
Q ss_pred EEEEcCCCCCcC
Q 006634 583 FVICQNSVPQIP 594 (637)
Q Consensus 583 LVIGGpPCQ~FS 594 (637)
+|+--||..+..
T Consensus 359 ~Vv~dPPr~g~~ 370 (433)
T 1uwv_A 359 KVLLDPARAGAA 370 (433)
T ss_dssp EEEECCCTTCCH
T ss_pred EEEECCCCccHH
Confidence 999999987654
No 87
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.97 E-value=0.016 Score=49.68 Aligned_cols=42 Identities=21% Similarity=0.147 Sum_probs=36.8
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhh
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI 119 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~ 119 (637)
....+..|+.|||+++.|.+|+...|..+ ++.=+++|+++..
T Consensus 29 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~n-~e~A~ewL~~h~~ 70 (84)
T 1vek_A 29 NEEIVAQLVSMGFSQLHCQKAAINTSNAG-VEEAMNWLLSHMD 70 (84)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTTCC-HHHHHHHHHHHTT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHcCCC-HHHHHHHHHhCCC
Confidence 56788999999999999999999998765 5888999998753
No 88
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.94 E-value=0.0088 Score=51.42 Aligned_cols=41 Identities=20% Similarity=0.166 Sum_probs=36.6
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhh
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI 119 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~ 119 (637)
..+++..|+.|||+++.|.+|+..+|-+ ++.-+++|+.++-
T Consensus 29 ~ee~I~~Lv~MGF~~~~A~~AL~~t~gd--ve~A~e~L~sh~~ 69 (83)
T 1veg_A 29 SQESINQLVYMGFDTVVAEAALRVFGGN--VQLAAQTLAHHGG 69 (83)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHTTTC--HHHHHHHHHHHTS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCCC
Confidence 4578999999999999999999999976 6899999998754
No 89
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=95.91 E-value=0.012 Score=57.42 Aligned_cols=85 Identities=13% Similarity=0.114 Sum_probs=56.0
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhc--------CCCCCccccccccccChhhHHHh
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS--------GQTGELVQIEDIQALTTKKFESL 574 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~t--------n~~g~l~~~~DI~~Lt~~~Ie~l 574 (637)
.+.+|||++||.|++.+.+.+.+-. ..+++||+++.+....+.+.... +.....++.+|+.+.-...+
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~--- 124 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPE-DLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFF--- 124 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTT-SEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTS---
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCC-CCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhc---
Confidence 4678999999999999999888732 24789999999887776654322 11222345677765211111
Q ss_pred hhccCCccEEEEcCCCCCc
Q 006634 575 IHKLGSIDFVICQNSVPQI 593 (637)
Q Consensus 575 ~~~~g~~DLVIGGpPCQ~F 593 (637)
..+.+|.|+--.|...+
T Consensus 125 --~~~~~d~v~~~~p~p~~ 141 (246)
T 2vdv_E 125 --EKGQLSKMFFCFPDPHF 141 (246)
T ss_dssp --CTTCEEEEEEESCCCC-
T ss_pred --cccccCEEEEECCCccc
Confidence 13578888877776443
No 90
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=95.89 E-value=0.013 Score=53.27 Aligned_cols=77 Identities=10% Similarity=0.023 Sum_probs=54.9
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g--~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
.+.+|||+.||.|.+...+.+.|. .++++|+++.+....+.+....+... ..+...|+.+... .+.
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~---------~~~ 119 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK---------DRK 119 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT---------TSC
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc---------cCC
Confidence 457899999999999999888864 47899999999888877665432222 2345566654321 247
Q ss_pred ccEEEEcCCCC
Q 006634 581 IDFVICQNSVP 591 (637)
Q Consensus 581 ~DLVIGGpPCQ 591 (637)
+|+|+..+|..
T Consensus 120 ~D~v~~~~~~~ 130 (194)
T 1dus_A 120 YNKIITNPPIR 130 (194)
T ss_dssp EEEEEECCCST
T ss_pred ceEEEECCCcc
Confidence 99999876643
No 91
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.86 E-value=0.0093 Score=50.00 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=36.5
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhh
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI 119 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~ 119 (637)
..+.+..|+.|||+++.+.+|+..+|-.+ ++.=+++|+.++.
T Consensus 9 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~~-ve~A~ewL~~~~~ 50 (74)
T 2dag_A 9 DESVIIQLVEMGFPMDACRKAVYYTGNSG-AEAAMNWVMSHMD 50 (74)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHHTSCC-HHHHHHHHHHHTT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCC-HHHHHHHHHhCCC
Confidence 45688999999999999999999999744 5889999998854
No 92
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=95.86 E-value=0.015 Score=53.97 Aligned_cols=81 Identities=15% Similarity=0.125 Sum_probs=58.5
Q ss_pred cccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhc
Q 006634 498 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK 577 (637)
Q Consensus 498 K~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~ 577 (637)
..+.+.+.+|||+-||.|.+...+.+.|.. .++++|+++.+....+..... .....+...|+.++.. .
T Consensus 37 ~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~~--------~ 104 (215)
T 2pxx_A 37 EPELRPEDRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLDF--------P 104 (215)
T ss_dssp GGGCCTTCCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCCS--------C
T ss_pred HHhcCCCCeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCCC--------C
Confidence 344456789999999999999999999863 578999999998888765432 1223345677776531 1
Q ss_pred cCCccEEEEcCCC
Q 006634 578 LGSIDFVICQNSV 590 (637)
Q Consensus 578 ~g~~DLVIGGpPC 590 (637)
.+.||+|+..++.
T Consensus 105 ~~~fD~v~~~~~~ 117 (215)
T 2pxx_A 105 SASFDVVLEKGTL 117 (215)
T ss_dssp SSCEEEEEEESHH
T ss_pred CCcccEEEECcch
Confidence 2579999976654
No 93
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=95.86 E-value=0.023 Score=53.23 Aligned_cols=80 Identities=18% Similarity=0.085 Sum_probs=58.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+.+|||+.||.|.+...|.+.|. .++++|+++......+.+....+.....+..+|+.+... ..+.||
T Consensus 77 ~~~~vLdiG~G~G~~~~~la~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~~D 145 (210)
T 3lbf_A 77 PQSRVLEIGTGSGYQTAILAHLVQ---HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQ--------ARAPFD 145 (210)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG--------GGCCEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCc--------cCCCcc
Confidence 467999999999999999988864 478999999998888877654432223355677765332 135799
Q ss_pred EEEEcCCCCCc
Q 006634 583 FVICQNSVPQI 593 (637)
Q Consensus 583 LVIGGpPCQ~F 593 (637)
+|+...++..+
T Consensus 146 ~i~~~~~~~~~ 156 (210)
T 3lbf_A 146 AIIVTAAPPEI 156 (210)
T ss_dssp EEEESSBCSSC
T ss_pred EEEEccchhhh
Confidence 99987666544
No 94
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=95.83 E-value=0.017 Score=62.18 Aligned_cols=87 Identities=14% Similarity=0.119 Sum_probs=61.2
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+.+|||+.||.||.+..+...--.--.++++|+++...+..+.+....+.....+..+|+.++... + ..+.||
T Consensus 259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~-~-----~~~~fD 332 (450)
T 2yxl_A 259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEI-I-----GEEVAD 332 (450)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSS-S-----CSSCEE
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchh-h-----ccCCCC
Confidence 4578999999999999888764211024789999999988888776544322333456777665421 1 114699
Q ss_pred EEEEcCCCCCcCc
Q 006634 583 FVICQNSVPQIPN 595 (637)
Q Consensus 583 LVIGGpPCQ~FS~ 595 (637)
+|+--+||.++..
T Consensus 333 ~Vl~D~Pcsg~g~ 345 (450)
T 2yxl_A 333 KVLLDAPCTSSGT 345 (450)
T ss_dssp EEEEECCCCCGGG
T ss_pred EEEEcCCCCCCee
Confidence 9999999998875
No 95
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.81 E-value=0.0079 Score=49.11 Aligned_cols=39 Identities=23% Similarity=0.247 Sum_probs=34.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhh
Q 006634 80 KRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI 119 (637)
Q Consensus 80 ~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~ 119 (637)
.+..|+.|||+++.|.+|+..+|..+ ++.=+++|++++.
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t~n~~-~e~A~~wL~~h~~ 50 (64)
T 2crn_A 12 LLEPLLAMGFPVHTALKALAATGRKT-AEEALAWLHDHCN 50 (64)
T ss_dssp SHHHHHHTSCCHHHHHHHHHHHTSCC-HHHHHHHHHHHSS
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCCC-HHHHHHHHHhCCC
Confidence 56899999999999999999999855 5899999998853
No 96
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=95.81 E-value=0.016 Score=61.52 Aligned_cols=77 Identities=18% Similarity=0.280 Sum_probs=59.1
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+.+||||.||.|.+.+.+.+.|. -|++||+++.+....+.+....+ ....++..|+.+.... .+.||
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~g~---~V~gvDis~~al~~A~~n~~~~~-~~v~~~~~D~~~~~~~--------~~~fD 300 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARMGA---EVVGVEDDLASVLSLQKGLEANA-LKAQALHSDVDEALTE--------EARFD 300 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHTTC---EEEEEESBHHHHHHHHHHHHHTT-CCCEEEECSTTTTSCT--------TCCEE
T ss_pred CCCEEEEEeeeCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcC-CCeEEEEcchhhcccc--------CCCeE
Confidence 467899999999999999999986 46899999999998888765432 2233566777665421 25799
Q ss_pred EEEEcCCCC
Q 006634 583 FVICQNSVP 591 (637)
Q Consensus 583 LVIGGpPCQ 591 (637)
+|+..+|..
T Consensus 301 ~Ii~npp~~ 309 (381)
T 3dmg_A 301 IIVTNPPFH 309 (381)
T ss_dssp EEEECCCCC
T ss_pred EEEECCchh
Confidence 999988865
No 97
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=95.76 E-value=0.0094 Score=61.45 Aligned_cols=97 Identities=15% Similarity=0.095 Sum_probs=66.2
Q ss_pred hhhhhhccc--chhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCc
Q 006634 480 SLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL 557 (637)
Q Consensus 480 ~Lgnsfqvd--tv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l 557 (637)
.+|-.|-+| .+..++..+.. ..+-+|||+-||.|.++..|.+.|- -|++||+|+.....++..+.. .....
T Consensus 27 ~~GQnfL~d~~i~~~Iv~~l~~--~~~~~VLEIG~G~G~lT~~La~~~~---~V~aVEid~~li~~a~~~~~~--~~~v~ 99 (295)
T 3gru_A 27 KLGQCFLIDKNFVNKAVESANL--TKDDVVLEIGLGKGILTEELAKNAK---KVYVIEIDKSLEPYANKLKEL--YNNIE 99 (295)
T ss_dssp ---CCEECCHHHHHHHHHHTTC--CTTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCGGGHHHHHHHHHH--CSSEE
T ss_pred ccCccccCCHHHHHHHHHhcCC--CCcCEEEEECCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHhcc--CCCeE
Confidence 346655333 44555554432 2457899999999999999988874 478999999999988876642 12233
Q ss_pred cccccccccChhhHHHhhhccCCccEEEEcCCCC
Q 006634 558 VQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP 591 (637)
Q Consensus 558 ~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ 591 (637)
++.+|+.++.-.. ..+|+|++..|-+
T Consensus 100 vi~gD~l~~~~~~--------~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 100 IIWGDALKVDLNK--------LDFNKVVANLPYQ 125 (295)
T ss_dssp EEESCTTTSCGGG--------SCCSEEEEECCGG
T ss_pred EEECchhhCCccc--------CCccEEEEeCccc
Confidence 6788998775322 2589999888743
No 98
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=95.75 E-value=0.027 Score=53.60 Aligned_cols=97 Identities=18% Similarity=0.107 Sum_probs=62.5
Q ss_pred hhccccccCCCCCcccccCCCCChHHHHHHHcCC----ceeeEEEeecCHHHHHHHHHHhhhcC-----CCCCccccccc
Q 006634 493 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGI----KLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDI 563 (637)
Q Consensus 493 ~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi----~~k~vvaVEid~~a~~t~r~~~~~tn-----~~g~l~~~~DI 563 (637)
.+..|......+.+|||+-||.|.+...+.+.+- +-..++++|+++...+..+.+....+ .....+..+|+
T Consensus 70 ~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 149 (227)
T 2pbf_A 70 SLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNI 149 (227)
T ss_dssp HHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCG
T ss_pred HHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECCh
Confidence 3444443344568999999999999998887652 11247899999998888777654432 12223456777
Q ss_pred cccChhhHHHhhhccCCccEEEEcCCCCCc
Q 006634 564 QALTTKKFESLIHKLGSIDFVICQNSVPQI 593 (637)
Q Consensus 564 ~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~F 593 (637)
.+...... ...+.||+|+...++..+
T Consensus 150 ~~~~~~~~----~~~~~fD~I~~~~~~~~~ 175 (227)
T 2pbf_A 150 YQVNEEEK----KELGLFDAIHVGASASEL 175 (227)
T ss_dssp GGCCHHHH----HHHCCEEEEEECSBBSSC
T ss_pred HhcccccC----ccCCCcCEEEECCchHHH
Confidence 65431110 113579999988877654
No 99
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=95.73 E-value=0.017 Score=61.69 Aligned_cols=79 Identities=11% Similarity=0.096 Sum_probs=55.7
Q ss_pred CCCcccccCCCCChHHHHHHHcCCce-------------------------------------eeEEEeecCHHHHHHHH
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKL-------------------------------------KGVISIETSETNRRILK 545 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~-------------------------------------k~vvaVEid~~a~~t~r 545 (637)
.+.+|||+|||.|++.+.+...+..+ ..++++|+|+.+.+..+
T Consensus 201 ~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar 280 (393)
T 3k0b_A 201 PDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAK 280 (393)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHH
Confidence 46789999999999876555433221 13789999999999988
Q ss_pred HHhhhcCCCC-CccccccccccChhhHHHhhhccCCccEEEEcCCC
Q 006634 546 RWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV 590 (637)
Q Consensus 546 ~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPC 590 (637)
.+....+... ..+..+|+.++.. .+.+|+|+.-||-
T Consensus 281 ~Na~~~gl~~~I~~~~~D~~~~~~---------~~~fD~Iv~NPPY 317 (393)
T 3k0b_A 281 QNAVEAGLGDLITFRQLQVADFQT---------EDEYGVVVANPPY 317 (393)
T ss_dssp HHHHHTTCTTCSEEEECCGGGCCC---------CCCSCEEEECCCC
T ss_pred HHHHHcCCCCceEEEECChHhCCC---------CCCCCEEEECCCC
Confidence 8766543222 2356678877653 1379999999883
No 100
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=95.73 E-value=0.0092 Score=61.54 Aligned_cols=80 Identities=13% Similarity=-0.022 Sum_probs=54.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCce----eeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKL----KGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL 578 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~----k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~ 578 (637)
.+.+|||+.||.|++.+.+.+..-.. ..++++|+++.+.++.+.+....+. ...+..+|.-... ..
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~---------~~ 199 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANL---------LV 199 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCC---------CC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCcc---------cc
Confidence 45899999999999998876543111 3578999999999888776543322 2234455543211 12
Q ss_pred CCccEEEEcCCCCC
Q 006634 579 GSIDFVICQNSVPQ 592 (637)
Q Consensus 579 g~~DLVIGGpPCQ~ 592 (637)
+.||+|++-||..-
T Consensus 200 ~~fD~Ii~NPPfg~ 213 (344)
T 2f8l_A 200 DPVDVVISDLPVGY 213 (344)
T ss_dssp CCEEEEEEECCCSE
T ss_pred CCccEEEECCCCCC
Confidence 57999999999743
No 101
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=95.70 E-value=0.0099 Score=59.81 Aligned_cols=99 Identities=13% Similarity=0.107 Sum_probs=64.4
Q ss_pred Hhhhhhhccc--chhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCC
Q 006634 479 ESLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE 556 (637)
Q Consensus 479 k~Lgnsfqvd--tv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~ 556 (637)
|.+|-.|-+| .+..++..+.. ..+-+|||+-||.|.++..|.+.|- .|++||+|+.....++..+.. ....
T Consensus 5 k~~GQnFL~d~~i~~~iv~~~~~--~~~~~VLEIG~G~G~lt~~La~~~~---~V~avEid~~~~~~~~~~~~~--~~~v 77 (255)
T 3tqs_A 5 KRFGQHFLHDSFVLQKIVSAIHP--QKTDTLVEIGPGRGALTDYLLTECD---NLALVEIDRDLVAFLQKKYNQ--QKNI 77 (255)
T ss_dssp ----CCEECCHHHHHHHHHHHCC--CTTCEEEEECCTTTTTHHHHTTTSS---EEEEEECCHHHHHHHHHHHTT--CTTE
T ss_pred CcCCcccccCHHHHHHHHHhcCC--CCcCEEEEEcccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHhh--CCCc
Confidence 4456666443 34444444432 2467899999999999999998883 478999999999988876643 1223
Q ss_pred ccccccccccChhhHHHhhhccCCccEEEEcCC
Q 006634 557 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNS 589 (637)
Q Consensus 557 l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpP 589 (637)
.++.+|+.+++-..+. ..+.+| |+|-+|
T Consensus 78 ~~i~~D~~~~~~~~~~----~~~~~~-vv~NlP 105 (255)
T 3tqs_A 78 TIYQNDALQFDFSSVK----TDKPLR-VVGNLP 105 (255)
T ss_dssp EEEESCTTTCCGGGSC----CSSCEE-EEEECC
T ss_pred EEEEcchHhCCHHHhc----cCCCeE-EEecCC
Confidence 3678899888643321 013567 777776
No 102
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=95.68 E-value=0.011 Score=54.96 Aligned_cols=82 Identities=12% Similarity=0.076 Sum_probs=56.2
Q ss_pred CCCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhcc
Q 006634 501 FPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKL 578 (637)
Q Consensus 501 f~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~-~g~l~~~~DI~~Lt~~~Ie~l~~~~ 578 (637)
.+.+.+|||+.||.|++...+.+. |-. ..++++|+++.+.+..+.+....+. ....++.+|+.++.. . ..
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~--~~ 91 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGEN-GRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDK-----Y--ID 91 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTT-CEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGG-----T--CC
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhh-----h--cc
Confidence 345679999999999999888765 211 1478999999998888877654321 122345677655432 1 12
Q ss_pred CCccEEEEcCCC
Q 006634 579 GSIDFVICQNSV 590 (637)
Q Consensus 579 g~~DLVIGGpPC 590 (637)
+.||+|+..+|-
T Consensus 92 ~~fD~v~~~~~~ 103 (197)
T 3eey_A 92 CPVKAVMFNLGY 103 (197)
T ss_dssp SCEEEEEEEESB
T ss_pred CCceEEEEcCCc
Confidence 579999988766
No 103
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=95.62 E-value=0.013 Score=57.91 Aligned_cols=75 Identities=13% Similarity=0.177 Sum_probs=53.7
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
+.+.+|||+-||.|.+...+.++|. .++++|+++.+....+.+....+.. ..+..+|+.+. + ..+.+
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~----~-----~~~~f 185 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAA----L-----PFGPF 185 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHH----G-----GGCCE
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhc----C-----cCCCC
Confidence 4567999999999999999999986 4789999999998888766543221 22344554431 1 12579
Q ss_pred cEEEEcCC
Q 006634 582 DFVICQNS 589 (637)
Q Consensus 582 DLVIGGpP 589 (637)
|+|+...+
T Consensus 186 D~Vv~n~~ 193 (254)
T 2nxc_A 186 DLLVANLY 193 (254)
T ss_dssp EEEEEECC
T ss_pred CEEEECCc
Confidence 99997544
No 104
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=95.62 E-value=0.011 Score=60.15 Aligned_cols=95 Identities=16% Similarity=0.182 Sum_probs=65.4
Q ss_pred hhhhhhccc--chhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCc
Q 006634 480 SLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL 557 (637)
Q Consensus 480 ~Lgnsfqvd--tv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l 557 (637)
.+|..|-+| .+..++..+. .. .+ +|||+-||.|.++..|.+.|. -|+++|+|+.....++..... ....
T Consensus 24 ~~GQnfL~d~~i~~~Iv~~~~-~~-~~-~VLEIG~G~G~lt~~L~~~~~---~V~avEid~~~~~~l~~~~~~---~~v~ 94 (271)
T 3fut_A 24 RFGQNFLVSEAHLRRIVEAAR-PF-TG-PVFEVGPGLGALTRALLEAGA---EVTAIEKDLRLRPVLEETLSG---LPVR 94 (271)
T ss_dssp TSSCCEECCHHHHHHHHHHHC-CC-CS-CEEEECCTTSHHHHHHHHTTC---CEEEEESCGGGHHHHHHHTTT---SSEE
T ss_pred cCCccccCCHHHHHHHHHhcC-CC-CC-eEEEEeCchHHHHHHHHHcCC---EEEEEECCHHHHHHHHHhcCC---CCEE
Confidence 345555333 3333343332 22 35 999999999999999999984 478999999999988876532 1233
Q ss_pred cccccccccChhhHHHhhhccCCccEEEEcCCC
Q 006634 558 VQIEDIQALTTKKFESLIHKLGSIDFVICQNSV 590 (637)
Q Consensus 558 ~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPC 590 (637)
++.+|+.+++-..+ ..+|+|+|-.|=
T Consensus 95 vi~~D~l~~~~~~~-------~~~~~iv~NlPy 120 (271)
T 3fut_A 95 LVFQDALLYPWEEV-------PQGSLLVANLPY 120 (271)
T ss_dssp EEESCGGGSCGGGS-------CTTEEEEEEECS
T ss_pred EEECChhhCChhhc-------cCccEEEecCcc
Confidence 67889988764322 257899998874
No 105
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=95.59 E-value=0.013 Score=62.18 Aligned_cols=78 Identities=15% Similarity=0.250 Sum_probs=54.7
Q ss_pred CCCcccccCCCCChHHHHHHHcCCce-------------------------------------eeEEEeecCHHHHHHHH
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKL-------------------------------------KGVISIETSETNRRILK 545 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~-------------------------------------k~vvaVEid~~a~~t~r 545 (637)
.+.+|||+|||.|++.+.+...|..+ ..++++|+|+.+.++.+
T Consensus 195 ~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar 274 (385)
T 3ldu_A 195 AGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIAR 274 (385)
T ss_dssp TTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHH
Confidence 46789999999999877665543211 24789999999999888
Q ss_pred HHhhhcCCCC-CccccccccccChhhHHHhhhccCCccEEEEcCC
Q 006634 546 RWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNS 589 (637)
Q Consensus 546 ~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpP 589 (637)
.+....+... ..+..+|+.++.. .+.+|+|+.-||
T Consensus 275 ~Na~~~gl~~~i~~~~~D~~~l~~---------~~~~D~Iv~NPP 310 (385)
T 3ldu_A 275 ENAEIAGVDEYIEFNVGDATQFKS---------EDEFGFIITNPP 310 (385)
T ss_dssp HHHHHHTCGGGEEEEECCGGGCCC---------SCBSCEEEECCC
T ss_pred HHHHHcCCCCceEEEECChhhcCc---------CCCCcEEEECCC
Confidence 7765443221 2245677776543 236899999888
No 106
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=95.58 E-value=0.024 Score=51.14 Aligned_cols=75 Identities=12% Similarity=0.056 Sum_probs=53.3
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+.+|||+.||.|.+...+.+.+ ..++++|+++.+....+.+....+.....+..+|+.+ .+. .+.+|
T Consensus 35 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~----~~~-----~~~~D 102 (183)
T 2yxd_A 35 KDDVVVDVGCGSGGMTVEIAKRC---KFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED----VLD-----KLEFN 102 (183)
T ss_dssp TTCEEEEESCCCSHHHHHHHTTS---SEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH----HGG-----GCCCS
T ss_pred CCCEEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc----ccc-----CCCCc
Confidence 45689999999999999998844 3578999999998888876654322222244556543 111 15799
Q ss_pred EEEEcCC
Q 006634 583 FVICQNS 589 (637)
Q Consensus 583 LVIGGpP 589 (637)
+|+..+|
T Consensus 103 ~i~~~~~ 109 (183)
T 2yxd_A 103 KAFIGGT 109 (183)
T ss_dssp EEEECSC
T ss_pred EEEECCc
Confidence 9998887
No 107
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.57 E-value=0.0077 Score=49.10 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhh
Q 006634 79 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 118 (637)
Q Consensus 79 ~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q 118 (637)
..+..|+.|||+++.+.+|+..+|-.+ ++.=+++|+.++
T Consensus 21 ~~i~~L~~MGF~~~~a~~AL~~t~~~n-ve~A~ewL~~~~ 59 (64)
T 2cpw_A 21 SALDVLLSMGFPRARAQKALASTGGRS-VQTACDWLFSHS 59 (64)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTTSC-HHHHHHHHHSCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCC-HHHHHHHHHhCC
Confidence 468999999999999999999999744 588899999764
No 108
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=95.57 E-value=0.015 Score=42.18 Aligned_cols=36 Identities=31% Similarity=0.291 Sum_probs=29.6
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHH
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFI 114 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I 114 (637)
..+.+..|+.|||+++.+.+|+..|+-+ ++.=+++|
T Consensus 4 ~~~~i~~L~~mGf~~~~a~~AL~~~~~n--~e~A~~~L 39 (40)
T 1z96_A 4 LNSKIAQLVSMGFDPLEAAQALDAANGD--LDVAASFL 39 (40)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTC--HHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHH
Confidence 4568899999999999999999999763 46666665
No 109
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=95.56 E-value=0.026 Score=53.70 Aligned_cols=92 Identities=17% Similarity=0.117 Sum_probs=61.0
Q ss_pred hhccccccCCCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcC-----CCCCcccccccccc
Q 006634 493 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQAL 566 (637)
Q Consensus 493 ~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn-----~~g~l~~~~DI~~L 566 (637)
.+..|......+.+|||+-||.|++...+.+. |-. ..++++|+++...+..+.+....+ .....+...|+...
T Consensus 67 ~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 145 (226)
T 1i1n_A 67 ALELLFDQLHEGAKALDVGSGSGILTACFARMVGCT-GKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG 145 (226)
T ss_dssp HHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred HHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccC
Confidence 34444433455789999999999999888765 422 247899999998887776654321 11122345666533
Q ss_pred ChhhHHHhhhccCCccEEEEcCCCCCc
Q 006634 567 TTKKFESLIHKLGSIDFVICQNSVPQI 593 (637)
Q Consensus 567 t~~~Ie~l~~~~g~~DLVIGGpPCQ~F 593 (637)
.. ..+.||+|+...||..+
T Consensus 146 ~~--------~~~~fD~i~~~~~~~~~ 164 (226)
T 1i1n_A 146 YA--------EEAPYDAIHVGAAAPVV 164 (226)
T ss_dssp CG--------GGCCEEEEEECSBBSSC
T ss_pred cc--------cCCCcCEEEECCchHHH
Confidence 21 13579999999999766
No 110
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=95.54 E-value=0.03 Score=52.47 Aligned_cols=80 Identities=11% Similarity=0.009 Sum_probs=56.1
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+.+|||+.||.|.+...+.+.|-. ..++++|+++.+.+..+.+....+.....+..+|+.+.-. ..+.+|
T Consensus 40 ~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~~D 110 (204)
T 3e05_A 40 DDLVMWDIGAGSASVSIEASNLMPN-GRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD--------DLPDPD 110 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHCTT-SEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT--------TSCCCS
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh--------cCCCCC
Confidence 4678999999999999999988722 3478999999999888876654332222244566643221 225799
Q ss_pred EEEEcCCCC
Q 006634 583 FVICQNSVP 591 (637)
Q Consensus 583 LVIGGpPCQ 591 (637)
+|+.+.+..
T Consensus 111 ~i~~~~~~~ 119 (204)
T 3e05_A 111 RVFIGGSGG 119 (204)
T ss_dssp EEEESCCTT
T ss_pred EEEECCCCc
Confidence 999887654
No 111
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=95.54 E-value=0.027 Score=55.62 Aligned_cols=76 Identities=21% Similarity=0.217 Sum_probs=56.4
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+.+|||+.||.|.+...|.+.|.+ |+++|+++.+....+......+. ...+...|+.++.. .+.||
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~~---v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~---------~~~fD 186 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGYD---VTSWDHNENSIAFLNETKEKENL-NISTALYDINAANI---------QENYD 186 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCCC---------CSCEE
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccccc---------cCCcc
Confidence 4678999999999999999999873 68999999998888776544322 23345677766542 24689
Q ss_pred EEEEcCCCC
Q 006634 583 FVICQNSVP 591 (637)
Q Consensus 583 LVIGGpPCQ 591 (637)
+|+...+..
T Consensus 187 ~i~~~~~~~ 195 (286)
T 3m70_A 187 FIVSTVVFM 195 (286)
T ss_dssp EEEECSSGG
T ss_pred EEEEccchh
Confidence 888766544
No 112
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=95.51 E-value=0.01 Score=54.89 Aligned_cols=69 Identities=14% Similarity=0.083 Sum_probs=50.9
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 583 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 583 (637)
+-+|||+.||.|.+...+.+.| .++++|+++.+.+. .+ ...+..+|+.+.-. .+.||+
T Consensus 24 ~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~-------~~--~~~~~~~d~~~~~~---------~~~fD~ 81 (170)
T 3q87_B 24 MKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES-------HR--GGNLVRADLLCSIN---------QESVDV 81 (170)
T ss_dssp SCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT-------CS--SSCEEECSTTTTBC---------GGGCSE
T ss_pred CCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc-------cc--CCeEEECChhhhcc---------cCCCCE
Confidence 4589999999999999999988 47899999998654 11 22356778765221 146999
Q ss_pred EEEcCCCCCcC
Q 006634 584 VICQNSVPQIP 594 (637)
Q Consensus 584 VIGGpPCQ~FS 594 (637)
|+..+|-...+
T Consensus 82 i~~n~~~~~~~ 92 (170)
T 3q87_B 82 VVFNPPYVPDT 92 (170)
T ss_dssp EEECCCCBTTC
T ss_pred EEECCCCccCC
Confidence 99988765544
No 113
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=95.45 E-value=0.017 Score=45.28 Aligned_cols=42 Identities=19% Similarity=0.129 Sum_probs=36.3
Q ss_pred chhhHHHHHHHhcCC-CHHHHHHHHHHhCCCCcHHHHHHHHHHhh
Q 006634 75 GLHIEKRASLLMMNF-SVNEVDFALDKLGKDAPVYELVDFITAAQ 118 (637)
Q Consensus 75 s~~~~~~~~lv~MGF-~~eeV~~AI~~~G~da~i~~Lld~I~a~q 118 (637)
....+++..|+.||| +++.+.+|+..+|-+ ++.-+++|+..+
T Consensus 9 ~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gn--ve~Ave~L~~~~ 51 (53)
T 2knz_A 9 VRFQQQLEQLNSMGFINREANLQALIATGGD--INAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHHTSC--HHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHHcC
Confidence 345678999999999 999999999999974 688899999865
No 114
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=95.44 E-value=0.021 Score=51.86 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=55.6
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006634 501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
.+.+.+|||+-||.|.+...+.+.|. .++++|+++.+....+.... ...+...|+.++.. ..+.
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~~~~~~~~a~~~~~-----~~~~~~~d~~~~~~--------~~~~ 107 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQGH---DVLGTDLDPILIDYAKQDFP-----EARWVVGDLSVDQI--------SETD 107 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCT-----TSEEEECCTTTSCC--------CCCC
T ss_pred ccCCCeEEEECCCCCHHHHHHHHCCC---cEEEEcCCHHHHHHHHHhCC-----CCcEEEcccccCCC--------CCCc
Confidence 45678999999999999999999986 36899999998887765432 22345677766531 1257
Q ss_pred ccEEEEcCCCCC
Q 006634 581 IDFVICQNSVPQ 592 (637)
Q Consensus 581 ~DLVIGGpPCQ~ 592 (637)
+|+|+..+++-.
T Consensus 108 ~D~i~~~~~~~~ 119 (195)
T 3cgg_A 108 FDLIVSAGNVMG 119 (195)
T ss_dssp EEEEEECCCCGG
T ss_pred eeEEEECCcHHh
Confidence 999997655543
No 115
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.43 E-value=0.015 Score=48.53 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=35.8
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhh
Q 006634 76 LHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 118 (637)
Q Consensus 76 ~~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q 118 (637)
...+++..|+.|||+++.|.+|+..+|- + ++.=+++|+..+
T Consensus 28 ~~~~~v~~L~~MGF~~~~a~~AL~~t~~-n-ve~Ave~L~~~~ 68 (73)
T 1wiv_A 28 IDQSSVDTLLSFGFAEDVARKALKASGG-D-IEKATDWVFNNS 68 (73)
T ss_dssp SCHHHHHHHHHHTCCHHHHHHHHHHTTS-C-HHHHHHHHHHSC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCC-C-HHHHHHHHHhCC
Confidence 3567899999999999999999999996 3 688899999864
No 116
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=95.40 E-value=0.023 Score=60.68 Aligned_cols=85 Identities=12% Similarity=0.117 Sum_probs=61.9
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+.+|||+.||.||.+..+...+-. -.++++|+++...+..+.+....+. ...+..+|..++... + ..+.||
T Consensus 246 ~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~-~~~~~~~D~~~~~~~-~-----~~~~fD 317 (429)
T 1sqg_A 246 NGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDGRYPSQW-C-----GEQQFD 317 (429)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCTTCTHHH-H-----TTCCEE
T ss_pred CcCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCC-CeEEEeCchhhchhh-c-----ccCCCC
Confidence 3578999999999999998887532 3578999999988888877654332 223456777655311 1 124799
Q ss_pred EEEEcCCCCCcCc
Q 006634 583 FVICQNSVPQIPN 595 (637)
Q Consensus 583 LVIGGpPCQ~FS~ 595 (637)
+|+.-+||.++..
T Consensus 318 ~Vl~D~Pcsg~g~ 330 (429)
T 1sqg_A 318 RILLDAPCSATGV 330 (429)
T ss_dssp EEEEECCCCCGGG
T ss_pred EEEEeCCCCcccc
Confidence 9999999998875
No 117
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=95.38 E-value=0.024 Score=60.39 Aligned_cols=79 Identities=10% Similarity=0.088 Sum_probs=55.6
Q ss_pred CCCcccccCCCCChHHHHHHHcCCce-------------------------------------eeEEEeecCHHHHHHHH
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKL-------------------------------------KGVISIETSETNRRILK 545 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~-------------------------------------k~vvaVEid~~a~~t~r 545 (637)
.+-+++|.|||.|++.+.+...+.++ ..++++|+|+.+.+..+
T Consensus 194 ~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar 273 (384)
T 3ldg_A 194 PDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIAR 273 (384)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHH
Confidence 46789999999999876554433221 13789999999999988
Q ss_pred HHhhhcCCCC-CccccccccccChhhHHHhhhccCCccEEEEcCCC
Q 006634 546 RWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV 590 (637)
Q Consensus 546 ~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPC 590 (637)
.+....+... ..+..+|+.++.. .+.+|+|+.-||-
T Consensus 274 ~Na~~~gl~~~I~~~~~D~~~l~~---------~~~fD~Iv~NPPY 310 (384)
T 3ldg_A 274 KNAREVGLEDVVKLKQMRLQDFKT---------NKINGVLISNPPY 310 (384)
T ss_dssp HHHHHTTCTTTEEEEECCGGGCCC---------CCCSCEEEECCCC
T ss_pred HHHHHcCCCCceEEEECChHHCCc---------cCCcCEEEECCch
Confidence 8776543222 2356678877653 1379999998884
No 118
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=95.38 E-value=0.024 Score=60.46 Aligned_cols=41 Identities=15% Similarity=0.185 Sum_probs=34.8
Q ss_pred chhhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 006634 75 GLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA 117 (637)
Q Consensus 75 s~~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~ 117 (637)
+...+.+..|+.|||+++.|.+|+..++-+ . +.=+|+|++.
T Consensus 166 ~~~~~~i~~l~~MGf~~~~~~~AL~a~~nn-~-~~A~e~L~~g 206 (368)
T 1oqy_A 166 SEYETMLTEIMSMGYERERVVAALRASYNN-P-HRAVEYLLTG 206 (368)
T ss_dssp TTHHHHHHHHHTTTCCSHHHHHHHHHSCSS-T-THHHHTTTTS
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHcCCC-H-HHHHHHHHhC
Confidence 457788999999999999999999999974 3 6778888743
No 119
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=95.32 E-value=0.021 Score=54.42 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=56.5
Q ss_pred hhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHH
Q 006634 493 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE 572 (637)
Q Consensus 493 ~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie 572 (637)
.+..+..+.+.+.+|||+-||.|.+...+.+.|.. ++++|+++.+....+... ......++..|+.++..
T Consensus 43 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~---- 112 (242)
T 3l8d_A 43 IIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYK---AVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSLPF---- 112 (242)
T ss_dssp HHHHHHHHSCTTCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBCSS----
T ss_pred HHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHcCCe---EEEEECCHHHHHHHHhhc---ccCCceEEEcchhcCCC----
Confidence 34445555667789999999999999999999873 689999999887776532 11223345677766541
Q ss_pred HhhhccCCccEEEEc
Q 006634 573 SLIHKLGSIDFVICQ 587 (637)
Q Consensus 573 ~l~~~~g~~DLVIGG 587 (637)
..+.||+|+..
T Consensus 113 ----~~~~fD~v~~~ 123 (242)
T 3l8d_A 113 ----ENEQFEAIMAI 123 (242)
T ss_dssp ----CTTCEEEEEEE
T ss_pred ----CCCCccEEEEc
Confidence 12467888754
No 120
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=95.29 E-value=0.032 Score=55.05 Aligned_cols=96 Identities=15% Similarity=0.055 Sum_probs=60.8
Q ss_pred hhhhhhccc--chhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCc
Q 006634 480 SLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL 557 (637)
Q Consensus 480 ~Lgnsfqvd--tv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l 557 (637)
.+|..|-++ .+...+..+. ...+-+|||+.||.|.++..|.+.|. .|+++|+|+.....++..... .....
T Consensus 7 ~~gQ~fl~d~~~~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~--~~~v~ 79 (244)
T 1qam_A 7 KHSQNFITSKHNIDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRCN---FVTAIEIDHKLCKTTENKLVD--HDNFQ 79 (244)
T ss_dssp ---CCBCCCHHHHHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHTTT--CCSEE
T ss_pred cCCccccCCHHHHHHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcCC---eEEEEECCHHHHHHHHHhhcc--CCCeE
Confidence 345555332 3334444432 13467899999999999999998883 478999999999888876532 12233
Q ss_pred cccccccccChhhHHHhhhccCCccEEEEcCCC
Q 006634 558 VQIEDIQALTTKKFESLIHKLGSIDFVICQNSV 590 (637)
Q Consensus 558 ~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPC 590 (637)
++.+|+.++.... ...+ .|++.+|=
T Consensus 80 ~~~~D~~~~~~~~-------~~~~-~vv~nlPy 104 (244)
T 1qam_A 80 VLNKDILQFKFPK-------NQSY-KIFGNIPY 104 (244)
T ss_dssp EECCCGGGCCCCS-------SCCC-EEEEECCG
T ss_pred EEEChHHhCCccc-------CCCe-EEEEeCCc
Confidence 5678887765310 1234 57777774
No 121
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=95.27 E-value=0.035 Score=52.63 Aligned_cols=82 Identities=20% Similarity=0.083 Sum_probs=56.7
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+.+||||.||.|.+.+.+.+..-. ..+++||+++.+....+.+....+.....++.+|+.++.. .+ ..+.+|
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~-~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~-----~~~~~D 113 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPD-INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTD-YF-----EDGEID 113 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGG-TS-----CTTCCS
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCC-CCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHh-hc-----CCCCCC
Confidence 3578999999999999988876321 2478999999998888776544332223356678776431 01 124699
Q ss_pred EEEEcCCCC
Q 006634 583 FVICQNSVP 591 (637)
Q Consensus 583 LVIGGpPCQ 591 (637)
+|+..+|..
T Consensus 114 ~i~~~~~~~ 122 (214)
T 1yzh_A 114 RLYLNFSDP 122 (214)
T ss_dssp EEEEESCCC
T ss_pred EEEEECCCC
Confidence 999887753
No 122
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=95.22 E-value=0.042 Score=50.43 Aligned_cols=74 Identities=16% Similarity=0.119 Sum_probs=53.7
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 583 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 583 (637)
+.+|||+-||.|.+...+.+.|. .++++|+++.+....+......+.....+...|+.++.. .+.+|+
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---------~~~~D~ 100 (199)
T 2xvm_A 33 PGKTLDLGCGNGRNSLYLAANGY---DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF---------DRQYDF 100 (199)
T ss_dssp SCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC---------CCCEEE
T ss_pred CCeEEEEcCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC---------CCCceE
Confidence 45999999999999999999886 378999999998888776544322223345667766531 246888
Q ss_pred EEEcCC
Q 006634 584 VICQNS 589 (637)
Q Consensus 584 VIGGpP 589 (637)
|+....
T Consensus 101 v~~~~~ 106 (199)
T 2xvm_A 101 ILSTVV 106 (199)
T ss_dssp EEEESC
T ss_pred EEEcch
Confidence 886654
No 123
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=95.19 E-value=0.047 Score=52.09 Aligned_cols=75 Identities=16% Similarity=0.103 Sum_probs=53.1
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+.+|||+.||.|.+.+.+.+.|. .|+++|+++.+.+..+.+....+.. ...++.+|+.+.- ...+.|
T Consensus 55 ~~~~vLDlGcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--------~~~~~~ 123 (204)
T 3njr_A 55 RGELLWDIGGGSGSVSVEWCLAGG---RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAAL--------ADLPLP 123 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGG--------TTSCCC
T ss_pred CCCEEEEecCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhc--------ccCCCC
Confidence 457899999999999999988865 4789999999998888765443322 2234566765421 122479
Q ss_pred cEEEEcC
Q 006634 582 DFVICQN 588 (637)
Q Consensus 582 DLVIGGp 588 (637)
|+|+-+.
T Consensus 124 D~v~~~~ 130 (204)
T 3njr_A 124 EAVFIGG 130 (204)
T ss_dssp SEEEECS
T ss_pred CEEEECC
Confidence 9998554
No 124
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=95.18 E-value=0.032 Score=52.50 Aligned_cols=85 Identities=19% Similarity=0.275 Sum_probs=58.3
Q ss_pred cccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-----CCccccccccccChhh
Q 006634 496 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-----GELVQIEDIQALTTKK 570 (637)
Q Consensus 496 vLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-----g~l~~~~DI~~Lt~~~ 570 (637)
.++.+.+.+.+|||+-||.|.+...+.+.|.. ++++|+++.+....+.+....+.. ...+...|+..+..
T Consensus 23 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-- 97 (235)
T 3sm3_A 23 IIHNYLQEDDEILDIGCGSGKISLELASKGYS---VTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSF-- 97 (235)
T ss_dssp THHHHCCTTCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCS--
T ss_pred HHHHhCCCCCeEEEECCCCCHHHHHHHhCCCe---EEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCC--
Confidence 34455567889999999999999999999863 689999999988887655432110 01234566665431
Q ss_pred HHHhhhccCCccEEEEcCCCC
Q 006634 571 FESLIHKLGSIDFVICQNSVP 591 (637)
Q Consensus 571 Ie~l~~~~g~~DLVIGGpPCQ 591 (637)
..+.||+|+......
T Consensus 98 ------~~~~~D~v~~~~~l~ 112 (235)
T 3sm3_A 98 ------HDSSFDFAVMQAFLT 112 (235)
T ss_dssp ------CTTCEEEEEEESCGG
T ss_pred ------CCCceeEEEEcchhh
Confidence 125789999765433
No 125
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=95.08 E-value=0.0074 Score=63.04 Aligned_cols=96 Identities=11% Similarity=0.078 Sum_probs=59.3
Q ss_pred Hhhhhhhcccchhhh-hccccccCCCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCC
Q 006634 479 ESLRHCFQTDTLGYH-LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGE 556 (637)
Q Consensus 479 k~Lgnsfqvdtv~~~-lsvLK~~f~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~ 556 (637)
+.+|..|..+.+... +..+.. +.+.+|||+.||.|++.+.+.+. +-. ..++++|+++.+.+.. ...
T Consensus 16 ~~~g~~~TP~~l~~~~~~~~~~--~~~~~vLD~gcGtG~~~~~~~~~~~~~-~~i~gvDi~~~~~~~a---------~~~ 83 (421)
T 2ih2_A 16 RSLGRVETPPEVVDFMVSLAEA--PRGGRVLEPACAHGPFLRAFREAHGTA-YRFVGVEIDPKALDLP---------PWA 83 (421)
T ss_dssp -----CCCCHHHHHHHHHHCCC--CTTCEEEEETCTTCHHHHHHHHHHCSC-SEEEEEESCTTTCCCC---------TTE
T ss_pred ccCceEeCCHHHHHHHHHhhcc--CCCCEEEECCCCChHHHHHHHHHhCCC-CeEEEEECCHHHHHhC---------CCC
Confidence 455666655544443 333332 23559999999999999988763 211 3578999999875322 112
Q ss_pred ccccccccccChhhHHHhhhccCCccEEEEcCCCCCcCc
Q 006634 557 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPN 595 (637)
Q Consensus 557 l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~ 595 (637)
.++.+|+.+... .+.||+|++-||.-....
T Consensus 84 ~~~~~D~~~~~~---------~~~fD~Ii~NPPy~~~~~ 113 (421)
T 2ih2_A 84 EGILADFLLWEP---------GEAFDLILGNPPYGIVGE 113 (421)
T ss_dssp EEEESCGGGCCC---------SSCEEEEEECCCCCCBSC
T ss_pred cEEeCChhhcCc---------cCCCCEEEECcCccCccc
Confidence 245677765432 247999999999977653
No 126
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.06 E-value=0.027 Score=48.28 Aligned_cols=41 Identities=17% Similarity=0.113 Sum_probs=35.5
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhh
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI 119 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~ 119 (637)
..+.+..|+.|||+++.+.+|+..++- .++.=+++|+.++.
T Consensus 29 ~e~~i~~L~~MGF~~~~a~~AL~~t~~--nve~A~ewL~~~~~ 69 (83)
T 2dai_A 29 DEAALRQLTEMGFPENRATKALQLNHM--SVPQAMEWLIEHAE 69 (83)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTS--CHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCC--CHHHHHHHHHHCCC
Confidence 567889999999999999999999954 36889999998753
No 127
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=95.04 E-value=0.041 Score=57.59 Aligned_cols=80 Identities=13% Similarity=0.111 Sum_probs=58.8
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccc-cChhhHHHhhhccCCcc
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA-LTTKKFESLIHKLGSID 582 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~-Lt~~~Ie~l~~~~g~~D 582 (637)
+-+|||+. |.|.+.+.+.+.|.. ..|+++|+++.+.+..+.+....+.....++.+|+.+ +... ..+.||
T Consensus 173 ~~~VLDlG-G~G~~~~~la~~~~~-~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~-------~~~~fD 243 (373)
T 2qm3_A 173 NKDIFVLG-DDDLTSIALMLSGLP-KRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDY-------ALHKFD 243 (373)
T ss_dssp TCEEEEES-CTTCHHHHHHHHTCC-SEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTT-------TSSCBS
T ss_pred CCEEEEEC-CCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhh-------ccCCcc
Confidence 57899999 999999999888752 3578999999999888877654332223356788876 4310 124799
Q ss_pred EEEEcCCCCC
Q 006634 583 FVICQNSVPQ 592 (637)
Q Consensus 583 LVIGGpPCQ~ 592 (637)
+|+-.|||..
T Consensus 244 ~Vi~~~p~~~ 253 (373)
T 2qm3_A 244 TFITDPPETL 253 (373)
T ss_dssp EEEECCCSSH
T ss_pred EEEECCCCch
Confidence 9999999853
No 128
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=95.02 E-value=0.036 Score=51.48 Aligned_cols=73 Identities=16% Similarity=0.224 Sum_probs=52.0
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
+.+ +|||+-||.|.+...|.+.|. .++++|+++.+....+......+. ...+...|+.++.. ..+.+
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~--------~~~~f 95 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASLGY---EVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFDI--------VADAW 95 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTTTC---EEEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTBSC--------CTTTC
T ss_pred CCC-CEEEECCCCCHhHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhcCC--------CcCCc
Confidence 345 999999999999999999987 378999999988877766543321 22345567765531 12468
Q ss_pred cEEEEc
Q 006634 582 DFVICQ 587 (637)
Q Consensus 582 DLVIGG 587 (637)
|+|+..
T Consensus 96 D~v~~~ 101 (202)
T 2kw5_A 96 EGIVSI 101 (202)
T ss_dssp SEEEEE
T ss_pred cEEEEE
Confidence 998864
No 129
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=94.94 E-value=0.042 Score=56.69 Aligned_cols=84 Identities=13% Similarity=0.102 Sum_probs=56.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+-+|||++||.||.+..+.+.+=. ..|+++|+|+.+....+.+....+ ....++.+|..++.. .+..+ ..+.||
T Consensus 26 ~g~~vLD~g~G~G~~s~~la~~~~~-~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l~~-~l~~~--g~~~~D 100 (301)
T 1m6y_A 26 DEKIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADF-LLKTL--GIEKVD 100 (301)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHH-HHHHT--TCSCEE
T ss_pred CCCEEEEEeCCcCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHHHH-HHHhc--CCCCCC
Confidence 3568999999999999998775201 247899999999988877654332 222345677765531 11110 124799
Q ss_pred EEEEcCCCC
Q 006634 583 FVICQNSVP 591 (637)
Q Consensus 583 LVIGGpPCQ 591 (637)
.|+--+||.
T Consensus 101 ~Vl~D~gvS 109 (301)
T 1m6y_A 101 GILMDLGVS 109 (301)
T ss_dssp EEEEECSCC
T ss_pred EEEEcCccc
Confidence 999988885
No 130
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=94.92 E-value=0.031 Score=43.68 Aligned_cols=40 Identities=18% Similarity=0.154 Sum_probs=33.9
Q ss_pred hhhHHHHHHHhcCC-CHHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 006634 76 LHIEKRASLLMMNF-SVNEVDFALDKLGKDAPVYELVDFITAA 117 (637)
Q Consensus 76 ~~~~~~~~lv~MGF-~~eeV~~AI~~~G~da~i~~Lld~I~a~ 117 (637)
....++..|+.||| +++.+.+|+..+|-+ ++.-+++|++.
T Consensus 11 ~~~~~l~~L~~MGF~~~~~~~~AL~~t~gn--~e~A~e~L~~~ 51 (52)
T 2jy5_A 11 RFQQQLEQLSAMGFLNREANLQALIATGGD--INAAIERLLGS 51 (52)
T ss_dssp TTHHHHHHHHHTTCCCHHHHHHHHHHHTTC--HHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHhC
Confidence 34578999999999 999999999999874 58889988753
No 131
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=94.91 E-value=0.035 Score=53.57 Aligned_cols=73 Identities=19% Similarity=0.144 Sum_probs=53.0
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+.+||||-||.|.+...|.+.|.. .++++|+++.+....+.... .....+..+|+.++.. ..+.||
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~--------~~~~fD 110 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAI--------EPDAYN 110 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCC--------CTTCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCC--------CCCCeE
Confidence 4689999999999999999999863 57899999998887766432 1222345677766541 124688
Q ss_pred EEEEcC
Q 006634 583 FVICQN 588 (637)
Q Consensus 583 LVIGGp 588 (637)
+|+...
T Consensus 111 ~v~~~~ 116 (253)
T 3g5l_A 111 VVLSSL 116 (253)
T ss_dssp EEEEES
T ss_pred EEEEch
Confidence 888654
No 132
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=94.89 E-value=0.054 Score=48.98 Aligned_cols=80 Identities=16% Similarity=0.166 Sum_probs=54.6
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+.+|||+.||.|.+...+.+.+ ..++++|+++.+.+..+.+....+. ....+...|+.+ .....+.+
T Consensus 33 ~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--------~~~~~~~~ 101 (192)
T 1l3i_A 33 KNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE--------ALCKIPDI 101 (192)
T ss_dssp TTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH--------HHTTSCCE
T ss_pred CCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH--------hcccCCCC
Confidence 45789999999999999999888 3578999999998888776543321 111233444432 11122479
Q ss_pred cEEEEcCCCCCc
Q 006634 582 DFVICQNSVPQI 593 (637)
Q Consensus 582 DLVIGGpPCQ~F 593 (637)
|+|+...+...+
T Consensus 102 D~v~~~~~~~~~ 113 (192)
T 1l3i_A 102 DIAVVGGSGGEL 113 (192)
T ss_dssp EEEEESCCTTCH
T ss_pred CEEEECCchHHH
Confidence 999988765443
No 133
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=94.83 E-value=0.059 Score=50.47 Aligned_cols=70 Identities=20% Similarity=0.236 Sum_probs=51.3
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006634 501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
.+.+.+|||+-||.|.+...|.+.|.. ++++|+++......+... +..+...|+.++.. .+.
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~~---------~~~ 102 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAAGFD---VDATDGSPELAAEASRRL------GRPVRTMLFHQLDA---------IDA 102 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHH------TSCCEECCGGGCCC---------CSC
T ss_pred cCCCCcEEEECCCCCHHHHHHHHcCCe---EEEECCCHHHHHHHHHhc------CCceEEeeeccCCC---------CCc
Confidence 345679999999999999999999873 689999999888776543 12244567766541 246
Q ss_pred ccEEEEcC
Q 006634 581 IDFVICQN 588 (637)
Q Consensus 581 ~DLVIGGp 588 (637)
||+|+...
T Consensus 103 fD~v~~~~ 110 (211)
T 3e23_A 103 YDAVWAHA 110 (211)
T ss_dssp EEEEEECS
T ss_pred EEEEEecC
Confidence 88888643
No 134
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.75 E-value=0.018 Score=46.97 Aligned_cols=40 Identities=25% Similarity=0.393 Sum_probs=34.4
Q ss_pred hhhhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhhcc
Q 006634 149 TMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 190 (637)
Q Consensus 149 ~~~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~Aaq 190 (637)
+.+.+..|+.|||++++|..|+..+|.+ |+.-+|-||+-.
T Consensus 19 e~e~V~~LvsMGFs~~qA~kALKat~~N--vErAaDWLFSH~ 58 (63)
T 1wgn_A 19 ERQCVETVVNMGYSYECVLRAMKKKGEN--IEQILDYLFAHS 58 (63)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCSC--HHHHHHHHHHHS
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence 3466779999999999999999999987 888888888643
No 135
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=94.74 E-value=0.065 Score=52.28 Aligned_cols=82 Identities=15% Similarity=0.152 Sum_probs=58.6
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
+.+.+|||+-||.|.+...+.+.+. ..++++|+++......+......+... ..+..+|+.++.. ..+.
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~ 114 (267)
T 3kkz_A 45 TEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPF--------RNEE 114 (267)
T ss_dssp CTTCEEEEETCTTCHHHHHHHTTCS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC--------CTTC
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCC--------CCCC
Confidence 4578999999999999999988853 257899999998888877654432222 3356778876641 1257
Q ss_pred ccEEEEcCCCCCc
Q 006634 581 IDFVICQNSVPQI 593 (637)
Q Consensus 581 ~DLVIGGpPCQ~F 593 (637)
||+|+...+...+
T Consensus 115 fD~i~~~~~~~~~ 127 (267)
T 3kkz_A 115 LDLIWSEGAIYNI 127 (267)
T ss_dssp EEEEEESSCGGGT
T ss_pred EEEEEEcCCceec
Confidence 9999977665443
No 136
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=94.74 E-value=0.075 Score=50.49 Aligned_cols=79 Identities=16% Similarity=0.127 Sum_probs=56.6
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+.+|||+-||.|.+...+.+.|. .++++|+++......+......+ ...+..+|+.+.-. ..+.||
T Consensus 70 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~~~~--------~~~~fD 136 (231)
T 1vbf_A 70 KGQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTLGYE--------EEKPYD 136 (231)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGGCCG--------GGCCEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHHcC---EEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCcccccc--------cCCCcc
Confidence 457899999999999999999883 57899999999888877654321 22245567654211 125789
Q ss_pred EEEEcCCCCCcC
Q 006634 583 FVICQNSVPQIP 594 (637)
Q Consensus 583 LVIGGpPCQ~FS 594 (637)
+|+...++..+.
T Consensus 137 ~v~~~~~~~~~~ 148 (231)
T 1vbf_A 137 RVVVWATAPTLL 148 (231)
T ss_dssp EEEESSBBSSCC
T ss_pred EEEECCcHHHHH
Confidence 999887776553
No 137
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=94.73 E-value=0.093 Score=50.44 Aligned_cols=81 Identities=10% Similarity=0.078 Sum_probs=57.6
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
+.+.+|||+-||.|.+...+.+.+-. .++++|+++......+......+... ..++.+|+.++.. ..+.
T Consensus 45 ~~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~ 114 (257)
T 3f4k_A 45 TDDAKIADIGCGTGGQTLFLADYVKG--QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPF--------QNEE 114 (257)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHCCS--EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSS--------CTTC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCC--------CCCC
Confidence 34679999999999999999888742 57899999999888877655433222 2356678766542 1257
Q ss_pred ccEEEEcCCCCC
Q 006634 581 IDFVICQNSVPQ 592 (637)
Q Consensus 581 ~DLVIGGpPCQ~ 592 (637)
||+|+.......
T Consensus 115 fD~v~~~~~l~~ 126 (257)
T 3f4k_A 115 LDLIWSEGAIYN 126 (257)
T ss_dssp EEEEEEESCSCC
T ss_pred EEEEEecChHhh
Confidence 999987654443
No 138
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=94.71 E-value=0.055 Score=52.35 Aligned_cols=79 Identities=20% Similarity=0.214 Sum_probs=56.0
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
.+.+|||+.||.|++...+.+. |=. ..++++|+++...+..+.+....+... ..+..+|+.+.- ..+.
T Consensus 93 ~~~~vldiG~G~G~~~~~l~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~ 162 (255)
T 3mb5_A 93 PGDFIVEAGVGSGALTLFLANIVGPE-GRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGI---------EEEN 162 (255)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCC---------CCCS
T ss_pred CCCEEEEecCCchHHHHHHHHHhCCC-eEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhcc---------CCCC
Confidence 4678999999999999999887 411 357899999998888877665433222 234566766431 1246
Q ss_pred ccEEEEcCCCC
Q 006634 581 IDFVICQNSVP 591 (637)
Q Consensus 581 ~DLVIGGpPCQ 591 (637)
+|+|+..+|+.
T Consensus 163 ~D~v~~~~~~~ 173 (255)
T 3mb5_A 163 VDHVILDLPQP 173 (255)
T ss_dssp EEEEEECSSCG
T ss_pred cCEEEECCCCH
Confidence 99999987765
No 139
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=94.70 E-value=0.033 Score=56.37 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=34.9
Q ss_pred CcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhh
Q 006634 505 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 549 (637)
Q Consensus 505 l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~ 549 (637)
.+|||+|||.|..++-|-+.|.. |++||+++....+++.+..
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~~---V~~vE~~~~~~~l~~~~l~ 131 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGCR---VRMLERNPVVAALLDDGLA 131 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTCC---EEEEECCHHHHHHHHHHHH
T ss_pred CEEEEcCCcCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHH
Confidence 78999999999999988888863 7899999987666665443
No 140
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=94.70 E-value=0.028 Score=54.70 Aligned_cols=78 Identities=18% Similarity=0.152 Sum_probs=56.0
Q ss_pred hccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHH
Q 006634 494 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES 573 (637)
Q Consensus 494 lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~ 573 (637)
+..|....+.+.+|||+-||.|.+...|.+.|. .++++|+++......+.... ...++.+|+.++..
T Consensus 41 ~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~----- 107 (263)
T 3pfg_A 41 AALVRRHSPKAASLLDVACGTGMHLRHLADSFG---TVEGLELSADMLAIARRRNP-----DAVLHHGDMRDFSL----- 107 (263)
T ss_dssp HHHHHHHCTTCCEEEEETCTTSHHHHHHTTTSS---EEEEEESCHHHHHHHHHHCT-----TSEEEECCTTTCCC-----
T ss_pred HHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCC-----CCEEEECChHHCCc-----
Confidence 334445556678999999999999999999986 36899999998887765422 22355677776542
Q ss_pred hhhccCCccEEEEcC
Q 006634 574 LIHKLGSIDFVICQN 588 (637)
Q Consensus 574 l~~~~g~~DLVIGGp 588 (637)
.+.||+|+...
T Consensus 108 ----~~~fD~v~~~~ 118 (263)
T 3pfg_A 108 ----GRRFSAVTCMF 118 (263)
T ss_dssp ----SCCEEEEEECT
T ss_pred ----cCCcCEEEEcC
Confidence 24688888543
No 141
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=94.66 E-value=0.051 Score=51.46 Aligned_cols=74 Identities=16% Similarity=0.112 Sum_probs=53.7
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
+.+.+|||+-||.|.+...+.+.|.+ ++++|+++......+......+. ...+...|+.++.. .+.|
T Consensus 36 ~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~---------~~~f 102 (246)
T 1y8c_A 36 LVFDDYLDLACGTGNLTENLCPKFKN---TWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNI---------NRKF 102 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSSE---EEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCC---------SCCE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHCCCc---EEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccCCc---------cCCc
Confidence 45679999999999999999998863 78999999988887766543321 22345677766532 1478
Q ss_pred cEEEEcC
Q 006634 582 DFVICQN 588 (637)
Q Consensus 582 DLVIGGp 588 (637)
|+|+...
T Consensus 103 D~v~~~~ 109 (246)
T 1y8c_A 103 DLITCCL 109 (246)
T ss_dssp EEEEECT
T ss_pred eEEEEcC
Confidence 9998643
No 142
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=94.63 E-value=0.039 Score=52.42 Aligned_cols=77 Identities=21% Similarity=0.206 Sum_probs=52.9
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChh-hHHHhhh--c
Q 006634 501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTK-KFESLIH--K 577 (637)
Q Consensus 501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~-~Ie~l~~--~ 577 (637)
++.+.+||||-||.||++..+.+.+- .|++||+++.. ...+..++.+||.+.... .+..... .
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~~~---~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 88 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSLAR---KIISIDLQEME-----------EIAGVRFIRCDIFKETIFDDIDRALREEG 88 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTTCS---EEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEeecCCHHHHHHHHcCC---cEEEEeccccc-----------cCCCeEEEEccccCHHHHHHHHHHhhccc
Confidence 34578999999999999999888753 47899999752 122444678999876532 2222221 0
Q ss_pred cCCccEEEEcCCCC
Q 006634 578 LGSIDFVICQNSVP 591 (637)
Q Consensus 578 ~g~~DLVIGGpPCQ 591 (637)
.+.||+|+.-.|++
T Consensus 89 ~~~~D~Vlsd~~~~ 102 (191)
T 3dou_A 89 IEKVDDVVSDAMAK 102 (191)
T ss_dssp CSSEEEEEECCCCC
T ss_pred CCcceEEecCCCcC
Confidence 14899999877655
No 143
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=94.50 E-value=0.037 Score=64.65 Aligned_cols=103 Identities=14% Similarity=0.098 Sum_probs=59.8
Q ss_pred hhhhcccchhhhhcc-----ccccCCCCCcccccCCCCChHHHHHHHc-C-CceeeEEEeecCHHHHHHH--HHHhhh--
Q 006634 482 RHCFQTDTLGYHLSV-----LKSMFPGGLTMLSVFSGIGGAEVTLHRL-G-IKLKGVISIETSETNRRIL--KRWWES-- 550 (637)
Q Consensus 482 gnsfqvdtv~~~lsv-----LK~~f~~~l~vLsLFSGiGGlslGL~~a-G-i~~k~vvaVEid~~a~~t~--r~~~~~-- 550 (637)
|..+....++..+.- +.+..+.+.+|+|.+||.|++-+++.+. + ..-..++++||++.+.++. +.+...
T Consensus 295 GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~ 374 (878)
T 3s1s_A 295 GVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQ 374 (878)
T ss_dssp BSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTT
T ss_pred ceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhh
Confidence 444444444444322 2333456789999999999999887653 2 2123578999999988776 332211
Q ss_pred --cCCCCCccccccccccChhhHHHhhhccCCccEEEEcCCCC
Q 006634 551 --SGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP 591 (637)
Q Consensus 551 --tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ 591 (637)
++.....+...|....+. ...+.||+|||=||=-
T Consensus 375 LlhGi~~~~I~~dD~L~~~~-------~~~~kFDVVIgNPPYg 410 (878)
T 3s1s_A 375 LVSSNNAPTITGEDVCSLNP-------EDFANVSVVVMNPPYV 410 (878)
T ss_dssp TCBTTBCCEEECCCGGGCCG-------GGGTTEEEEEECCBCC
T ss_pred hhcCCCcceEEecchhcccc-------cccCCCCEEEECCCcc
Confidence 000011222334433221 1235799999999973
No 144
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.44 E-value=0.041 Score=47.34 Aligned_cols=41 Identities=12% Similarity=0.099 Sum_probs=34.3
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhh
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI 119 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~ 119 (637)
+.+++..|+.|||+++.|.+|+..++-+ ++.=+++|+.+..
T Consensus 21 n~~~I~qL~~MGF~~~~a~~AL~~~n~n--~e~A~ewL~~h~~ 61 (85)
T 2dkl_A 21 MSRLIKQLTDMGFPREPAEEALKSNNMN--LDQAMSALLEKKV 61 (85)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHTTSC--HHHHHHHHHTTSC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHHCcC
Confidence 4678899999999999999999666543 5899999998743
No 145
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=94.44 E-value=0.049 Score=54.75 Aligned_cols=96 Identities=14% Similarity=0.147 Sum_probs=57.9
Q ss_pred chhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhc-------CCCCCccccc
Q 006634 489 TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS-------GQTGELVQIE 561 (637)
Q Consensus 489 tv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~t-------n~~g~l~~~~ 561 (637)
.+...+..|+...+.+.+|||+-||.|++...+.+.+. ..++++|+++...+..+...... +.....++..
T Consensus 20 l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 97 (313)
T 3bgv_A 20 LIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRI--NKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITA 97 (313)
T ss_dssp HHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEEC
T ss_pred HHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEe
Confidence 33444455555445678999999999999998887653 35789999999887776654322 1111234567
Q ss_pred cccccChhhHHHhhhccCCccEEEEcC
Q 006634 562 DIQALTTKKFESLIHKLGSIDFVICQN 588 (637)
Q Consensus 562 DI~~Lt~~~Ie~l~~~~g~~DLVIGGp 588 (637)
|+.++.... .+....+.||+|+...
T Consensus 98 D~~~~~~~~--~~~~~~~~fD~V~~~~ 122 (313)
T 3bgv_A 98 DSSKELLID--KFRDPQMCFDICSCQF 122 (313)
T ss_dssp CTTTSCSTT--TCSSTTCCEEEEEEET
T ss_pred cccccchhh--hcccCCCCEEEEEEec
Confidence 776653100 0000123688888654
No 146
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=94.44 E-value=0.012 Score=45.28 Aligned_cols=38 Identities=18% Similarity=0.077 Sum_probs=31.5
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 006634 78 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA 117 (637)
Q Consensus 78 ~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~ 117 (637)
.+.|..|+.|||++..|.+|+..||-+ .+.=+++|++.
T Consensus 5 ~eaI~rL~~mGF~~~~a~~Al~a~~~n--~e~A~~~Lf~~ 42 (47)
T 1dv0_A 5 KEAIERLKALGFPESLVIQAYFACEKN--ENLAANFLLSQ 42 (47)
T ss_dssp HHHHTTTTTTTCCHHHHHHHHTTTTSC--HHHHHHHTTSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhC
Confidence 457889999999999999999999943 36678888753
No 147
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=94.43 E-value=0.075 Score=54.08 Aligned_cols=84 Identities=21% Similarity=0.212 Sum_probs=58.9
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+.+|||+.||.|++...+.+.+-+-..|+++|+++...+..+.+....+.....+..+|+.+... ..+.||
T Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~--------~~~~fD 146 (317)
T 1dl5_A 75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP--------EFSPYD 146 (317)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG--------GGCCEE
T ss_pred CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccc--------cCCCeE
Confidence 467999999999999988887764212378999999998887776654322223345677765322 125799
Q ss_pred EEEEcCCCCCcC
Q 006634 583 FVICQNSVPQIP 594 (637)
Q Consensus 583 LVIGGpPCQ~FS 594 (637)
+|+...++..+.
T Consensus 147 ~Iv~~~~~~~~~ 158 (317)
T 1dl5_A 147 VIFVTVGVDEVP 158 (317)
T ss_dssp EEEECSBBSCCC
T ss_pred EEEEcCCHHHHH
Confidence 999988877653
No 148
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=94.36 E-value=0.078 Score=50.93 Aligned_cols=61 Identities=16% Similarity=0.185 Sum_probs=45.6
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccC
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALT 567 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt 567 (637)
.+.+|||+-||.|.+...|.+.|.. ++++|+++......+......+. ...+..+|+.++.
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~~~~~~---v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~ 101 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELAERGYE---VVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIA 101 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCC
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhcc
Confidence 4578999999999999999999873 78999999998888776543321 2234566776553
No 149
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=94.36 E-value=0.042 Score=43.60 Aligned_cols=41 Identities=12% Similarity=0.183 Sum_probs=35.5
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhh
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 118 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q 118 (637)
+++-+..|+.|||+++.|.+|+++-|... ++.-+|+|..-.
T Consensus 9 n~qmlq~L~eMGFd~erae~Alk~Tg~~G-le~AmewL~k~~ 49 (54)
T 2cos_A 9 NRQMLQELVNAGCDQEMAGRALKQTGSRS-IEAALEYISKMS 49 (54)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHHHHHTSCC-HHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCccc-HHHHHHHHHHhc
Confidence 44568999999999999999999999976 799999998543
No 150
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=94.36 E-value=0.11 Score=49.86 Aligned_cols=87 Identities=16% Similarity=0.118 Sum_probs=58.9
Q ss_pred ccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 006634 499 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL 578 (637)
Q Consensus 499 ~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~ 578 (637)
...+.+.+|||+-||.|.+...|.+.|. .|+++|+++.+....+.... .....++..|+.++....- ....
T Consensus 52 ~~~~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~---~~~~ 122 (245)
T 3ggd_A 52 LLFNPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENT---AANISYRLLDGLVPEQAAQ---IHSE 122 (245)
T ss_dssp TTSCTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSC---CTTEEEEECCTTCHHHHHH---HHHH
T ss_pred hccCCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCc---ccCceEEECcccccccccc---cccc
Confidence 3345678999999999999999999886 47899999998887776432 1223356778877543210 1011
Q ss_pred CCccEEEEcCCCCCcC
Q 006634 579 GSIDFVICQNSVPQIP 594 (637)
Q Consensus 579 g~~DLVIGGpPCQ~FS 594 (637)
..+|+|+......-+.
T Consensus 123 ~~~d~v~~~~~~~~~~ 138 (245)
T 3ggd_A 123 IGDANIYMRTGFHHIP 138 (245)
T ss_dssp HCSCEEEEESSSTTSC
T ss_pred cCccEEEEcchhhcCC
Confidence 2489999776554443
No 151
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=94.27 E-value=0.065 Score=52.83 Aligned_cols=79 Identities=19% Similarity=0.178 Sum_probs=55.4
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccC
Q 006634 501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLG 579 (637)
Q Consensus 501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g 579 (637)
-+.+.+|||+-||.|.+...|.+.|.. ++++|+++......+......+. ....++.+|+.++.. ...+
T Consensus 66 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~~ 135 (285)
T 4htf_A 66 GPQKLRVLDAGGGEGQTAIKMAERGHQ---VILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVAS-------HLET 135 (285)
T ss_dssp CSSCCEEEEETCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGG-------GCSS
T ss_pred CCCCCEEEEeCCcchHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhh-------hcCC
Confidence 345689999999999999999999874 68999999988887766543221 112245677766542 0125
Q ss_pred CccEEEEcCC
Q 006634 580 SIDFVICQNS 589 (637)
Q Consensus 580 ~~DLVIGGpP 589 (637)
.||+|+....
T Consensus 136 ~fD~v~~~~~ 145 (285)
T 4htf_A 136 PVDLILFHAV 145 (285)
T ss_dssp CEEEEEEESC
T ss_pred CceEEEECch
Confidence 7999997543
No 152
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=94.27 E-value=0.051 Score=57.39 Aligned_cols=78 Identities=13% Similarity=0.046 Sum_probs=53.8
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC---CccccccccccChhhHHHhhhccCC
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG---ELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g---~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
+.+||||+||.|.+.+.+.+.+-. ..|++||+++.+.+..+.+....+-.. ..+..+|+.+.- ..+.
T Consensus 223 ~~~VLDlGcG~G~~s~~la~~~p~-~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~---------~~~~ 292 (375)
T 4dcm_A 223 EGEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV---------EPFR 292 (375)
T ss_dssp CSEEEEETCTTCHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTC---------CTTC
T ss_pred CCeEEEEeCcchHHHHHHHHHCCC-CEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccC---------CCCC
Confidence 378999999999999999888411 247899999999988887765432110 112445554311 1247
Q ss_pred ccEEEEcCCCC
Q 006634 581 IDFVICQNSVP 591 (637)
Q Consensus 581 ~DLVIGGpPCQ 591 (637)
||+|+..||..
T Consensus 293 fD~Ii~nppfh 303 (375)
T 4dcm_A 293 FNAVLCNPPFH 303 (375)
T ss_dssp EEEEEECCCC-
T ss_pred eeEEEECCCcc
Confidence 99999999864
No 153
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=94.22 E-value=0.09 Score=49.76 Aligned_cols=84 Identities=18% Similarity=0.169 Sum_probs=57.9
Q ss_pred CCCcccccCCCCChHHHHHHHc---CCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL 578 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a---Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~ 578 (637)
.+.+|||+-||.|+....|.++ |. .++++|+++......+.++...+... ..++.+|+.+. +..+....
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~~~ 130 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGG---RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDS----LQQIENEK 130 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHHHHHTT
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHHHHhcC
Confidence 3578999999999999999886 54 47899999999888888776543322 22455666532 22222111
Q ss_pred -CCccEEEEcCCCCCc
Q 006634 579 -GSIDFVICQNSVPQI 593 (637)
Q Consensus 579 -g~~DLVIGGpPCQ~F 593 (637)
+.||+|+-..+|..+
T Consensus 131 ~~~fD~v~~d~~~~~~ 146 (223)
T 3duw_A 131 YEPFDFIFIDADKQNN 146 (223)
T ss_dssp CCCCSEEEECSCGGGH
T ss_pred CCCcCEEEEcCCcHHH
Confidence 569999987776643
No 154
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=94.21 E-value=0.083 Score=49.54 Aligned_cols=79 Identities=18% Similarity=0.112 Sum_probs=55.0
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
+.+.+|||+-||.|.+...+.+.+-+-..++++|+++......+......+.....+...|+.++.. ..+.|
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~f 107 (219)
T 3dh0_A 36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPL--------PDNTV 107 (219)
T ss_dssp CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSS--------CSSCE
T ss_pred CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCC--------CCCCe
Confidence 3467999999999999999988762222578999999998888776654332223355677766531 12468
Q ss_pred cEEEEcC
Q 006634 582 DFVICQN 588 (637)
Q Consensus 582 DLVIGGp 588 (637)
|+|+...
T Consensus 108 D~v~~~~ 114 (219)
T 3dh0_A 108 DFIFMAF 114 (219)
T ss_dssp EEEEEES
T ss_pred eEEEeeh
Confidence 9988654
No 155
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=94.21 E-value=0.079 Score=53.34 Aligned_cols=85 Identities=15% Similarity=0.110 Sum_probs=57.4
Q ss_pred hhhhccccccCCCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccCh
Q 006634 491 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTT 568 (637)
Q Consensus 491 ~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~ 568 (637)
...+..|... +.+.+|||+.||.|++...|.+. |. .|+++|+++......+.+....+.. ...++.+|+.++.-
T Consensus 106 ~~l~~~l~~~-~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 181 (312)
T 3vc1_A 106 EFLMDHLGQA-GPDDTLVDAGCGRGGSMVMAHRRFGS---RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPF 181 (312)
T ss_dssp HHHHTTSCCC-CTTCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC
T ss_pred HHHHHHhccC-CCCCEEEEecCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCC
Confidence 3444444422 35679999999999999998877 75 3789999999888777765543222 12356678776541
Q ss_pred hhHHHhhhccCCccEEEEc
Q 006634 569 KKFESLIHKLGSIDFVICQ 587 (637)
Q Consensus 569 ~~Ie~l~~~~g~~DLVIGG 587 (637)
..+.||+|+..
T Consensus 182 --------~~~~fD~V~~~ 192 (312)
T 3vc1_A 182 --------DKGAVTASWNN 192 (312)
T ss_dssp --------CTTCEEEEEEE
T ss_pred --------CCCCEeEEEEC
Confidence 12468888853
No 156
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=94.19 E-value=0.067 Score=49.76 Aligned_cols=81 Identities=20% Similarity=0.076 Sum_probs=53.0
Q ss_pred hhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChh
Q 006634 490 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTK 569 (637)
Q Consensus 490 v~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~ 569 (637)
+...+..|... +.+.+|||+-||.|.+...+.+.|.+ ++++|+++......+. .+.....+..+|+.++.
T Consensus 34 ~~~~~~~l~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~---v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~~-- 103 (218)
T 3ou2_A 34 APAALERLRAG-NIRGDVLELASGTGYWTRHLSGLADR---VTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDWT-- 103 (218)
T ss_dssp HHHHHHHHTTT-TSCSEEEEESCTTSHHHHHHHHHSSE---EEEEESCHHHHHHHGG----GCCTTEEEEECCTTSCC--
T ss_pred HHHHHHHHhcC-CCCCeEEEECCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHh----cCCCCeEEEecccccCC--
Confidence 33444444443 34569999999999999999998863 6899999998777654 11122334566766541
Q ss_pred hHHHhhhccCCccEEEEc
Q 006634 570 KFESLIHKLGSIDFVICQ 587 (637)
Q Consensus 570 ~Ie~l~~~~g~~DLVIGG 587 (637)
..+.||+|+..
T Consensus 104 -------~~~~~D~v~~~ 114 (218)
T 3ou2_A 104 -------PDRQWDAVFFA 114 (218)
T ss_dssp -------CSSCEEEEEEE
T ss_pred -------CCCceeEEEEe
Confidence 12457777753
No 157
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=94.19 E-value=0.038 Score=55.54 Aligned_cols=81 Identities=17% Similarity=0.176 Sum_probs=49.7
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCH-------HHHHHHHHHhhhcCCCC-CccccccccccChhhHHHh
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSE-------TNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESL 574 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~-------~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l 574 (637)
.+.+|||++||.|.+++.|.+.|. -|+++|+++ .+.+..+.+....+... ..++.+|+.++. ..+
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~g~---~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l----~~~ 155 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASLGL---TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQM----PAL 155 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHTTC---CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHH----HHH
T ss_pred CcCeEEEeeCccCHHHHHHHHhCC---EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHH----Hhh
Confidence 357899999999999999998885 378999999 66555544322111001 123445554321 111
Q ss_pred hhccCCccEEEEcCCC
Q 006634 575 IHKLGSIDFVICQNSV 590 (637)
Q Consensus 575 ~~~~g~~DLVIGGpPC 590 (637)
....+.||+|+--||=
T Consensus 156 ~~~~~~fD~V~~dP~~ 171 (258)
T 2r6z_A 156 VKTQGKPDIVYLDPMY 171 (258)
T ss_dssp HHHHCCCSEEEECCCC
T ss_pred hccCCCccEEEECCCC
Confidence 1001479999987653
No 158
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.18 E-value=0.028 Score=42.76 Aligned_cols=35 Identities=17% Similarity=0.374 Sum_probs=29.9
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhh
Q 006634 151 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFS 188 (637)
Q Consensus 151 ~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~A 188 (637)
+++..|+.|||++++|..|+..|| .++.-++.|+.
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~~~---n~e~A~~~L~~ 45 (47)
T 2ekk_A 11 QQLQQLMDMGFTREHAMEALLNTS---TMEQATEYLLT 45 (47)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHSC---SHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcC---CHHHHHHHHHc
Confidence 567799999999999999999997 57777777764
No 159
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=94.14 E-value=0.033 Score=54.17 Aligned_cols=46 Identities=20% Similarity=0.191 Sum_probs=35.5
Q ss_pred CCCcccccCCCCChHHHHHHHcC-CceeeEEEeecCHHHHHHHHHHh
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLG-IKLKGVISIETSETNRRILKRWW 548 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aG-i~~k~vvaVEid~~a~~t~r~~~ 548 (637)
.+.+|||++||.|.+.+.+.+.. ..-..++++|+++.+.+..+.+.
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~ 97 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNL 97 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHH
Confidence 45799999999999999887650 11235789999999988777543
No 160
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.13 E-value=0.042 Score=42.35 Aligned_cols=37 Identities=11% Similarity=0.263 Sum_probs=31.1
Q ss_pred hhhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhh
Q 006634 150 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFS 188 (637)
Q Consensus 150 ~~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~A 188 (637)
.+++..|+.|||++++|..|+.+||-+ ++.-++.++.
T Consensus 9 ~~~i~~L~~MGF~~~~a~~AL~~~~~n--~e~A~e~L~~ 45 (49)
T 1ify_A 9 ETMLTEIMSMGYERERVVAALRASYNN--PHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHTTTSC--SHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHh
Confidence 367789999999999999999999975 6666777765
No 161
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=93.98 E-value=0.033 Score=61.81 Aligned_cols=76 Identities=14% Similarity=0.199 Sum_probs=51.0
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+++|||+=||.|-++..|.++|.. |++||.++.+..+-+..-... |.+ .-+.+..+.+++... ...+.||
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga~---V~giD~~~~~i~~a~~~a~~~---~~~--~~~~~~~~~~~~~~~-~~~~~fD 136 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGAT---IVGIDFQQENINVCRALAEEN---PDF--AAEFRVGRIEEVIAA-LEEGEFD 136 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHTS---TTS--EEEEEECCHHHHHHH-CCTTSCS
T ss_pred CCCeEEEECCCCcHHHHHHHhCCCE---EEEECCCHHHHHHHHHHHHhc---CCC--ceEEEECCHHHHhhh-ccCCCcc
Confidence 4689999999999999999999984 789999999998877654332 211 012222333332110 1235799
Q ss_pred EEEEc
Q 006634 583 FVICQ 587 (637)
Q Consensus 583 LVIGG 587 (637)
+|++-
T Consensus 137 ~v~~~ 141 (569)
T 4azs_A 137 LAIGL 141 (569)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99863
No 162
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=93.98 E-value=0.059 Score=51.46 Aligned_cols=77 Identities=17% Similarity=0.022 Sum_probs=52.9
Q ss_pred CcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCccE
Q 006634 505 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSIDF 583 (637)
Q Consensus 505 l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 583 (637)
.+|||+-||.|.+...|.+.|. .++++|+++.+....+......+.. ...+..+|+.++... +.||+
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---------~~fD~ 135 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPER---FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPT---------ELFDL 135 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTE---EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCS---------SCEEE
T ss_pred CCEEEeCCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCC---------CCeeE
Confidence 4999999999999999988775 3789999999988887655321111 122456777665421 36888
Q ss_pred EEEcCCCCCc
Q 006634 584 VICQNSVPQI 593 (637)
Q Consensus 584 VIGGpPCQ~F 593 (637)
|+.......+
T Consensus 136 v~~~~~l~~~ 145 (235)
T 3lcc_A 136 IFDYVFFCAI 145 (235)
T ss_dssp EEEESSTTTS
T ss_pred EEEChhhhcC
Confidence 8865544433
No 163
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=93.95 E-value=0.15 Score=48.40 Aligned_cols=79 Identities=15% Similarity=0.146 Sum_probs=51.4
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+.+|||+.||.|.++..|.+. |-. ..++++|+++.+.+..+.+.... ....++.+|+.+... +. ...+.|
T Consensus 73 ~~~~vLDlG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~~~~~~~~~--~~v~~~~~d~~~~~~--~~---~~~~~~ 144 (227)
T 1g8a_A 73 PGKSVLYLGIASGTTASHVSDIVGWE-GKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEE--YR---ALVPKV 144 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGG--GT---TTCCCE
T ss_pred CCCEEEEEeccCCHHHHHHHHHhCCC-eEEEEEECCHHHHHHHHHHHhcc--CCCEEEEccCCCcch--hh---cccCCc
Confidence 4678999999999999988765 421 24789999998766655543221 233355677765321 00 112469
Q ss_pred cEEEEcCC
Q 006634 582 DFVICQNS 589 (637)
Q Consensus 582 DLVIGGpP 589 (637)
|+|+..+|
T Consensus 145 D~v~~~~~ 152 (227)
T 1g8a_A 145 DVIFEDVA 152 (227)
T ss_dssp EEEEECCC
T ss_pred eEEEECCC
Confidence 99997766
No 164
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=93.95 E-value=0.089 Score=52.01 Aligned_cols=79 Identities=18% Similarity=0.185 Sum_probs=54.8
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCC
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
.+.+|||+.||.|.+.+.+.+. |-. ..++++|+++.+.+..+.+....+. ....+..+|+.+.- ..+.
T Consensus 112 ~~~~VLDiG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~ 181 (277)
T 1o54_A 112 EGDRIIDTGVGSGAMCAVLARAVGSS-GKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF---------DEKD 181 (277)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHTTTT-CEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC---------SCCS
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcc---------cCCc
Confidence 4678999999999999998877 421 2478999999998888876644321 11123456665431 1146
Q ss_pred ccEEEEcCCCC
Q 006634 581 IDFVICQNSVP 591 (637)
Q Consensus 581 ~DLVIGGpPCQ 591 (637)
||+|+-.+|+.
T Consensus 182 ~D~V~~~~~~~ 192 (277)
T 1o54_A 182 VDALFLDVPDP 192 (277)
T ss_dssp EEEEEECCSCG
T ss_pred cCEEEECCcCH
Confidence 99999988865
No 165
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=93.93 E-value=0.052 Score=55.12 Aligned_cols=45 Identities=20% Similarity=0.350 Sum_probs=38.3
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhh
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 550 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~ 550 (637)
.+-+|||+|||.|...+++.++|.+ +++||+++.+..+.+..+..
T Consensus 235 ~~~~vlD~f~GsGt~~~~a~~~g~~---~~g~e~~~~~~~~a~~r~~~ 279 (297)
T 2zig_A 235 VGDVVLDPFAGTGTTLIAAARWGRR---ALGVELVPRYAQLAKERFAR 279 (297)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHcCCe---EEEEeCCHHHHHHHHHHHHH
Confidence 4567999999999999999999963 68999999998887766543
No 166
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=93.92 E-value=0.12 Score=51.35 Aligned_cols=53 Identities=23% Similarity=0.118 Sum_probs=43.4
Q ss_pred cccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhc
Q 006634 498 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS 551 (637)
Q Consensus 498 K~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~t 551 (637)
.++.+.+-+|+|+-||.|-+.+.+.+.|-. ..|+++|+++.+....+.+-...
T Consensus 10 ~~~v~~g~~VlDIGtGsG~l~i~la~~~~~-~~V~avDi~~~al~~A~~N~~~~ 62 (225)
T 3kr9_A 10 ASFVSQGAILLDVGSDHAYLPIELVERGQI-KSAIAGEVVEGPYQSAVKNVEAH 62 (225)
T ss_dssp HTTSCTTEEEEEETCSTTHHHHHHHHTTSE-EEEEEEESSHHHHHHHHHHHHHT
T ss_pred HHhCCCCCEEEEeCCCcHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHc
Confidence 344566789999999999999999998843 46889999999999888776544
No 167
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=93.91 E-value=0.053 Score=40.35 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=28.4
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhh
Q 006634 151 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIF 187 (637)
Q Consensus 151 ~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~ 187 (637)
+++..|+.|||++++|..|+..|+-+ ++.-++.++
T Consensus 6 ~~i~~L~~MGF~~~~a~~AL~~~~~n--~e~A~~~L~ 40 (43)
T 2g3q_A 6 LAVEELSGMGFTEEEAHNALEKCNWD--LEAATNFLL 40 (43)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHTSC--HHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCcC--HHHHHHHHH
Confidence 56779999999999999999999764 555555554
No 168
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=93.87 E-value=0.11 Score=49.32 Aligned_cols=75 Identities=20% Similarity=0.126 Sum_probs=53.9
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhc------------CCCCCccccccccccChh
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS------------GQTGELVQIEDIQALTTK 569 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~t------------n~~g~l~~~~DI~~Lt~~ 569 (637)
+.+.+|||+=||.|....-|.+.|++ |++||+++.+.+..+...... ......++.+|+.++...
T Consensus 21 ~~~~~vLD~GCG~G~~~~~la~~g~~---V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 21 VPGARVLVPLCGKSQDMSWLSGQGYH---VVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHHCCE---EEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred CCCCEEEEeCCCCcHhHHHHHHCCCe---EEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 45689999999999999999999973 789999999988776542110 012233567888887643
Q ss_pred hHHHhhhccCCccEEEE
Q 006634 570 KFESLIHKLGSIDFVIC 586 (637)
Q Consensus 570 ~Ie~l~~~~g~~DLVIG 586 (637)
.. +.||+|+.
T Consensus 98 ~~-------~~fD~v~~ 107 (203)
T 1pjz_A 98 DI-------GHCAAFYD 107 (203)
T ss_dssp HH-------HSEEEEEE
T ss_pred cC-------CCEEEEEE
Confidence 21 36899885
No 169
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=93.85 E-value=0.11 Score=49.99 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=54.3
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006634 501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
.+.+.+|||+-||.|.+...|.+.|. .++++|+++......+... ........+..+|+.++.. ..+.
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~--------~~~~ 104 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIARGY---RYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPL--------PDES 104 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTTTC---EEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCS--------CTTC
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCC--------CCCC
Confidence 34568999999999999999998875 4789999999888777654 1112223345677765531 1246
Q ss_pred ccEEEEcCC
Q 006634 581 IDFVICQNS 589 (637)
Q Consensus 581 ~DLVIGGpP 589 (637)
||+|+....
T Consensus 105 fD~v~~~~~ 113 (263)
T 2yqz_A 105 VHGVIVVHL 113 (263)
T ss_dssp EEEEEEESC
T ss_pred eeEEEECCc
Confidence 899987543
No 170
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=93.84 E-value=0.13 Score=49.18 Aligned_cols=76 Identities=12% Similarity=0.030 Sum_probs=53.1
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+.+|||+.||.|.+...+.+.+. .++++|+++...+..+.+....+. ....+..+|+.+... ..+.+
T Consensus 91 ~~~~vldiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~ 159 (248)
T 2yvl_A 91 KEKRVLEFGTGSGALLAVLSEVAG---EVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV--------PEGIF 159 (248)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC--------CTTCB
T ss_pred CCCEEEEeCCCccHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc--------CCCcc
Confidence 467899999999999998888754 478999999998888776543321 112234566654320 11469
Q ss_pred cEEEEcCC
Q 006634 582 DFVICQNS 589 (637)
Q Consensus 582 DLVIGGpP 589 (637)
|+|+..+|
T Consensus 160 D~v~~~~~ 167 (248)
T 2yvl_A 160 HAAFVDVR 167 (248)
T ss_dssp SEEEECSS
T ss_pred cEEEECCc
Confidence 99998766
No 171
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=93.83 E-value=0.071 Score=57.13 Aligned_cols=83 Identities=14% Similarity=0.102 Sum_probs=55.2
Q ss_pred CCCcccccCCCCChHHHHHHHcC------------CceeeEEEeecCHHHHHHHHHHhhhcCCC--CCccccccccccCh
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLG------------IKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTT 568 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aG------------i~~k~vvaVEid~~a~~t~r~~~~~tn~~--g~l~~~~DI~~Lt~ 568 (637)
.+.+|+|..||.||+-+.+.+.- +....++++|+++.+.++.+.+...++.. ...+..+|.-....
T Consensus 171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~ 250 (445)
T 2okc_A 171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEP 250 (445)
T ss_dssp TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCC
T ss_pred CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCcc
Confidence 35799999999999988775420 01135789999999988777654333221 12345566543321
Q ss_pred hhHHHhhhccCCccEEEEcCCCCCcC
Q 006634 569 KKFESLIHKLGSIDFVICQNSVPQIP 594 (637)
Q Consensus 569 ~~Ie~l~~~~g~~DLVIGGpPCQ~FS 594 (637)
.+.||+|++-||.....
T Consensus 251 ---------~~~fD~Iv~NPPf~~~~ 267 (445)
T 2okc_A 251 ---------STLVDVILANPPFGTRP 267 (445)
T ss_dssp ---------SSCEEEEEECCCSSCCC
T ss_pred ---------cCCcCEEEECCCCCCcc
Confidence 23799999999987654
No 172
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=93.82 E-value=0.17 Score=50.67 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=37.9
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeec-CHHHHHHHHHHh
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIET-SETNRRILKRWW 548 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEi-d~~a~~t~r~~~ 548 (637)
.+.+||||.||.|.+++.+.+.|. ..|+++|+ ++.+....+.+.
T Consensus 79 ~~~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~ 123 (281)
T 3bzb_A 79 AGKTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNI 123 (281)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHH
Confidence 456899999999999999999985 35889999 899988888765
No 173
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=93.82 E-value=0.13 Score=50.12 Aligned_cols=82 Identities=21% Similarity=0.226 Sum_probs=57.0
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006634 501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
++.+.+|||+-||.|.+...+.+.+-. ..++++|+++......+......+.....+...|+.++.. ..+.
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~ 105 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPD-AEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPF--------EDSS 105 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCS--------CTTC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCC--------CCCC
Confidence 356789999999999999999888421 2478999999988877776544322223345677766542 1257
Q ss_pred ccEEEEcCCCC
Q 006634 581 IDFVICQNSVP 591 (637)
Q Consensus 581 ~DLVIGGpPCQ 591 (637)
||+|+......
T Consensus 106 fD~v~~~~~l~ 116 (276)
T 3mgg_A 106 FDHIFVCFVLE 116 (276)
T ss_dssp EEEEEEESCGG
T ss_pred eeEEEEechhh
Confidence 99999765443
No 174
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=93.79 E-value=0.092 Score=48.90 Aligned_cols=73 Identities=14% Similarity=0.095 Sum_probs=51.0
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 583 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 583 (637)
+.+|||+.||.|.+...+.+.. +-..++++|+++.+....+.+....+.....+..+|+.++.. .+.||+
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~~~~D~ 135 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS---------EPPFDG 135 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC---------CSCEEE
T ss_pred CCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCc---------cCCcCE
Confidence 5689999999999998888752 112478999999998888776554332223345677765432 246899
Q ss_pred EEE
Q 006634 584 VIC 586 (637)
Q Consensus 584 VIG 586 (637)
|+.
T Consensus 136 i~~ 138 (207)
T 1jsx_A 136 VIS 138 (207)
T ss_dssp EEC
T ss_pred EEE
Confidence 984
No 175
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=93.73 E-value=0.1 Score=50.20 Aligned_cols=77 Identities=13% Similarity=0.218 Sum_probs=55.1
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+.+|||+-||.|.+...+.+.|. .++++|+++......+......+.....+..+|+.++.. ..+.||
T Consensus 21 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~fD 89 (239)
T 1xxl_A 21 AEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF--------PDDSFD 89 (239)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCS--------CTTCEE
T ss_pred CCCEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCC--------CCCcEE
Confidence 467899999999999999988874 478999999988877766543322223345677765531 124689
Q ss_pred EEEEcCCC
Q 006634 583 FVICQNSV 590 (637)
Q Consensus 583 LVIGGpPC 590 (637)
+|+.....
T Consensus 90 ~v~~~~~l 97 (239)
T 1xxl_A 90 IITCRYAA 97 (239)
T ss_dssp EEEEESCG
T ss_pred EEEECCch
Confidence 99876543
No 176
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=93.69 E-value=0.14 Score=56.75 Aligned_cols=106 Identities=13% Similarity=0.097 Sum_probs=61.8
Q ss_pred hhhhhhcccchhhh-hccccccCCCCCcccccCCCCChHHHHHHHc----CC-------------ceeeEEEeecCHHHH
Q 006634 480 SLRHCFQTDTLGYH-LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL----GI-------------KLKGVISIETSETNR 541 (637)
Q Consensus 480 ~Lgnsfqvdtv~~~-lsvLK~~f~~~l~vLsLFSGiGGlslGL~~a----Gi-------------~~k~vvaVEid~~a~ 541 (637)
..|-.|....+... ...+.+ ..+.+|+|..||.|||-+.+.+. +- ....++++|+++.+.
T Consensus 147 ~~G~fyTP~~iv~~mv~~l~p--~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~ 224 (541)
T 2ar0_A 147 GAGQYFTPRPLIKTIIHLLKP--QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR 224 (541)
T ss_dssp ---CCCCCHHHHHHHHHHHCC--CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHH
T ss_pred cCCeeeCCHHHHHHHHHHhcc--CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHH
Confidence 34555655444333 333332 24689999999999998776532 10 113589999999998
Q ss_pred HHHHHHhhhcCCCC-----CccccccccccChhhHHHhhhccCCccEEEEcCCCCCcC
Q 006634 542 RILKRWWESSGQTG-----ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIP 594 (637)
Q Consensus 542 ~t~r~~~~~tn~~g-----~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS 594 (637)
++.+.+..-++... ..+.++|.-... ....+.||+|++-||.....
T Consensus 225 ~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~-------~~~~~~fD~Vv~NPPf~~~~ 275 (541)
T 2ar0_A 225 RLALMNCLLHDIEGNLDHGGAIRLGNTLGSD-------GENLPKAHIVATNPPFGSAA 275 (541)
T ss_dssp HHHHHHHHTTTCCCBGGGTBSEEESCTTSHH-------HHTSCCEEEEEECCCCTTCS
T ss_pred HHHHHHHHHhCCCccccccCCeEeCCCcccc-------cccccCCeEEEECCCccccc
Confidence 88776543332221 223444432111 11235799999999987665
No 177
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.67 E-value=0.051 Score=43.85 Aligned_cols=38 Identities=26% Similarity=0.389 Sum_probs=33.4
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhhcc
Q 006634 151 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 190 (637)
Q Consensus 151 ~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~Aaq 190 (637)
+++..|+.|||++++|..|+.+|+-+ ++.-++.|+...
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~~n--ve~A~e~L~~~~ 48 (63)
T 2dak_A 11 DCVTTIVSMGFSRDQALKALRATNNS--LERAVDWIFSHI 48 (63)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTTSC--SHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence 56779999999999999999999874 888889998765
No 178
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=93.63 E-value=0.03 Score=55.95 Aligned_cols=98 Identities=19% Similarity=0.080 Sum_probs=62.4
Q ss_pred Hhhhhhhccc--chhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCC
Q 006634 479 ESLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE 556 (637)
Q Consensus 479 k~Lgnsfqvd--tv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~ 556 (637)
|.+|-.|-+| .+..++..+.. ..+-+|||+.||.|.++..|.+.|. .-+++||+|+.....++.. .....
T Consensus 7 k~~GQnfl~d~~i~~~iv~~~~~--~~~~~VLDiG~G~G~lt~~L~~~~~--~~v~avEid~~~~~~~~~~----~~~~v 78 (249)
T 3ftd_A 7 KSFGQHLLVSEGVLKKIAEELNI--EEGNTVVEVGGGTGNLTKVLLQHPL--KKLYVIELDREMVENLKSI----GDERL 78 (249)
T ss_dssp -CCCSSCEECHHHHHHHHHHTTC--CTTCEEEEEESCHHHHHHHHTTSCC--SEEEEECCCHHHHHHHTTS----CCTTE
T ss_pred CcccccccCCHHHHHHHHHhcCC--CCcCEEEEEcCchHHHHHHHHHcCC--CeEEEEECCHHHHHHHHhc----cCCCe
Confidence 3445555333 33333433321 2356899999999999999998862 3478999999998877643 11222
Q ss_pred ccccccccccChhhHHHhhhccCCccEEEEcCCCC
Q 006634 557 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP 591 (637)
Q Consensus 557 l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ 591 (637)
.++.+|+.+++-..+ .+ ..+|+|-+|=+
T Consensus 79 ~~i~~D~~~~~~~~~------~~-~~~vv~NlPy~ 106 (249)
T 3ftd_A 79 EVINEDASKFPFCSL------GK-ELKVVGNLPYN 106 (249)
T ss_dssp EEECSCTTTCCGGGS------CS-SEEEEEECCTT
T ss_pred EEEEcchhhCChhHc------cC-CcEEEEECchh
Confidence 366789988764332 12 34788887753
No 179
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=93.62 E-value=0.12 Score=51.15 Aligned_cols=76 Identities=17% Similarity=0.075 Sum_probs=52.9
Q ss_pred CCCCcccccCCCCChHHHHHHHc---CCceeeEEEeecCHHHHHHHHHHhhhc-CCCCCccccccccccChhhHHHhhhc
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESS-GQTGELVQIEDIQALTTKKFESLIHK 577 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~a---Gi~~k~vvaVEid~~a~~t~r~~~~~t-n~~g~l~~~~DI~~Lt~~~Ie~l~~~ 577 (637)
..+.+|||+.||.|++...+.+. +. .++++|+++...+..+.+.... +.....+..+|+.+.- .
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~---------~ 176 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGKG---TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI---------S 176 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSS---EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC---------C
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccC---------c
Confidence 34679999999999999998876 44 4789999999988887766433 2112224556665421 1
Q ss_pred cCCccEEEEcCC
Q 006634 578 LGSIDFVICQNS 589 (637)
Q Consensus 578 ~g~~DLVIGGpP 589 (637)
.+.||+|+...|
T Consensus 177 ~~~fD~Vi~~~~ 188 (275)
T 1yb2_A 177 DQMYDAVIADIP 188 (275)
T ss_dssp SCCEEEEEECCS
T ss_pred CCCccEEEEcCc
Confidence 146999998655
No 180
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=93.60 E-value=0.067 Score=51.81 Aligned_cols=81 Identities=12% Similarity=0.046 Sum_probs=52.6
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
+.+.+|||+-||.|.+.+.|..+.-. ..|++||+++.+....+.+....+.....++.+|+.++... ....+.|
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~~~~f 142 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPH-LHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQR-----KDVRESY 142 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTC-----TTTTTCE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhccc-----ccccCCc
Confidence 35679999999999888887743211 24789999999888888766544322233456666554310 0012579
Q ss_pred cEEEEcC
Q 006634 582 DFVICQN 588 (637)
Q Consensus 582 DLVIGGp 588 (637)
|+|+...
T Consensus 143 D~V~~~~ 149 (240)
T 1xdz_A 143 DIVTARA 149 (240)
T ss_dssp EEEEEEC
T ss_pred cEEEEec
Confidence 9999644
No 181
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=93.56 E-value=0.08 Score=49.93 Aligned_cols=68 Identities=13% Similarity=0.069 Sum_probs=48.0
Q ss_pred hhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCcccccccccc
Q 006634 491 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQAL 566 (637)
Q Consensus 491 ~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~L 566 (637)
.+.+..+.... .+.+|||+=||.|.+...|.+.|. .++++|+++......+..+.. ...++.+|+.++
T Consensus 31 ~~~~~~l~~~~-~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~ 98 (250)
T 2p7i_A 31 PFMVRAFTPFF-RPGNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKD----GITYIHSRFEDA 98 (250)
T ss_dssp HHHHHHHGGGC-CSSCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGC
T ss_pred HHHHHHHHhhc-CCCcEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHc
Confidence 34445555444 456899999999999999998886 368999999988877765431 222455666554
No 182
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=93.54 E-value=0.15 Score=48.95 Aligned_cols=80 Identities=20% Similarity=0.162 Sum_probs=55.6
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhc-CCCCCccccccccccChhhHHHhhhccCC
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS-GQTGELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~t-n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
.+.+|||+.||.|.+...+.++ |-. ..++++|+++...+..+.+.... +.....+...|+.+.. + ..+.
T Consensus 96 ~~~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~---~-----~~~~ 166 (258)
T 2pwy_A 96 PGMRVLEAGTGSGGLTLFLARAVGEK-GLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAE---L-----EEAA 166 (258)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCC---C-----CTTC
T ss_pred CCCEEEEECCCcCHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcC---C-----CCCC
Confidence 4678999999999999998887 411 24789999999988888766443 2122234567776542 1 1146
Q ss_pred ccEEEEcCCCC
Q 006634 581 IDFVICQNSVP 591 (637)
Q Consensus 581 ~DLVIGGpPCQ 591 (637)
+|+|+..+|+.
T Consensus 167 ~D~v~~~~~~~ 177 (258)
T 2pwy_A 167 YDGVALDLMEP 177 (258)
T ss_dssp EEEEEEESSCG
T ss_pred cCEEEECCcCH
Confidence 99999877654
No 183
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=93.53 E-value=0.19 Score=47.22 Aligned_cols=78 Identities=8% Similarity=0.026 Sum_probs=52.6
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-----CCccccccccccChhhHHHhhhc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-----GELVQIEDIQALTTKKFESLIHK 577 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-----g~l~~~~DI~~Lt~~~Ie~l~~~ 577 (637)
.+.+|||+-||.|.+...|.+.|-. ..++++|+++.+.+..+......+.. ...+..+|+..+.. .
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--------~ 99 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSFF-EQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDK--------R 99 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTTC-SEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCG--------G
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCCC-CEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccc--------c
Confidence 3569999999999999999987732 35789999999988887765432211 12244566643331 1
Q ss_pred cCCccEEEEcCC
Q 006634 578 LGSIDFVICQNS 589 (637)
Q Consensus 578 ~g~~DLVIGGpP 589 (637)
.+.||+|+....
T Consensus 100 ~~~fD~v~~~~~ 111 (217)
T 3jwh_A 100 FHGYDAATVIEV 111 (217)
T ss_dssp GCSCSEEEEESC
T ss_pred CCCcCEEeeHHH
Confidence 246888885543
No 184
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=93.53 E-value=0.052 Score=54.63 Aligned_cols=78 Identities=18% Similarity=0.200 Sum_probs=54.7
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcC-----------CCCCccccccccccChhh
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-----------QTGELVQIEDIQALTTKK 570 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn-----------~~g~l~~~~DI~~Lt~~~ 570 (637)
+.+.+||+|.||.|++...+.+.|. ..+++||+|+...+..+.++ ..+ .+...++.+|..+.
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~--~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~---- 146 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDV--DEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEF---- 146 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCC--SEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHH----
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHH----
Confidence 3567899999999999998887753 46889999999999888876 221 11122344555321
Q ss_pred HHHhhhccCCccEEEEcCCC
Q 006634 571 FESLIHKLGSIDFVICQNSV 590 (637)
Q Consensus 571 Ie~l~~~~g~~DLVIGGpPC 590 (637)
+. . .+.+|+|+.-+|+
T Consensus 147 l~---~-~~~fD~Ii~d~~~ 162 (281)
T 1mjf_A 147 IK---N-NRGFDVIIADSTD 162 (281)
T ss_dssp HH---H-CCCEEEEEEECCC
T ss_pred hc---c-cCCeeEEEECCCC
Confidence 11 1 3579999988876
No 185
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=93.50 E-value=0.13 Score=47.79 Aligned_cols=69 Identities=16% Similarity=0.100 Sum_probs=51.5
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 583 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 583 (637)
+.+|||+-||.|.+...|.+.|.. ++++|+++......+... ....++.+|+.++.. ..+.||+
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~--------~~~~fD~ 105 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGHQ---IEGLEPATRLVELARQTH-----PSVTFHHGTITDLSD--------SPKRWAG 105 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTCC---EEEECCCHHHHHHHHHHC-----TTSEEECCCGGGGGG--------SCCCEEE
T ss_pred CCeEEEecCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHHhC-----CCCeEEeCccccccc--------CCCCeEE
Confidence 678999999999999999999874 689999999887776532 223356677766431 1257999
Q ss_pred EEEcC
Q 006634 584 VICQN 588 (637)
Q Consensus 584 VIGGp 588 (637)
|+...
T Consensus 106 v~~~~ 110 (203)
T 3h2b_A 106 LLAWY 110 (203)
T ss_dssp EEEES
T ss_pred EEehh
Confidence 98754
No 186
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=93.48 E-value=0.14 Score=46.15 Aligned_cols=82 Identities=13% Similarity=0.136 Sum_probs=52.6
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+.+|||+.||.|.+...+.+.. +-..++++|+++......+.+....+....+...+|..+ .++ ...+.||
T Consensus 25 ~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~----~~~---~~~~~~D 96 (178)
T 3hm2_A 25 PHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPR----AFD---DVPDNPD 96 (178)
T ss_dssp TTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTG----GGG---GCCSCCS
T ss_pred CCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHh----hhh---ccCCCCC
Confidence 45789999999999999887762 113478999999988888776544322212233445432 111 1116799
Q ss_pred EEEEcCCCCC
Q 006634 583 FVICQNSVPQ 592 (637)
Q Consensus 583 LVIGGpPCQ~ 592 (637)
+|+.+.+...
T Consensus 97 ~i~~~~~~~~ 106 (178)
T 3hm2_A 97 VIFIGGGLTA 106 (178)
T ss_dssp EEEECC-TTC
T ss_pred EEEECCcccH
Confidence 9997665544
No 187
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=93.44 E-value=0.11 Score=49.45 Aligned_cols=78 Identities=15% Similarity=0.105 Sum_probs=56.4
Q ss_pred CCCCcccccCCCCChHHHHHHHc--CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 579 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~a--Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g 579 (637)
+.+.+|||+-||.|.+...+.+. |. .++++|+++......+....... ...+..+|+.++... +
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~---------~ 108 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYPEA---TFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKYDFE---------E 108 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTCCCC---------S
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhccCCC---------C
Confidence 45689999999999999999888 54 47899999998888776543221 233456777765431 4
Q ss_pred CccEEEEcCCCCCc
Q 006634 580 SIDFVICQNSVPQI 593 (637)
Q Consensus 580 ~~DLVIGGpPCQ~F 593 (637)
.+|+|+......-+
T Consensus 109 ~fD~v~~~~~l~~~ 122 (234)
T 3dtn_A 109 KYDMVVSALSIHHL 122 (234)
T ss_dssp CEEEEEEESCGGGS
T ss_pred CceEEEEeCccccC
Confidence 79999987654433
No 188
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=93.43 E-value=0.073 Score=51.14 Aligned_cols=75 Identities=20% Similarity=0.129 Sum_probs=51.4
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+.+|||+-||.|.+...|.+.+. ..++++|+++.+....+......+.....++..|+.++.. ..+.||
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~fD 148 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP--------EPDSYD 148 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCC--------CSSCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCC--------CCCCEE
Confidence 468999999999999998887763 3578999999998888776543211111234566655432 124689
Q ss_pred EEEEc
Q 006634 583 FVICQ 587 (637)
Q Consensus 583 LVIGG 587 (637)
+|+..
T Consensus 149 ~v~~~ 153 (241)
T 2ex4_A 149 VIWIQ 153 (241)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99855
No 189
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=93.30 E-value=0.13 Score=51.49 Aligned_cols=79 Identities=15% Similarity=0.101 Sum_probs=51.7
Q ss_pred cCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc
Q 006634 500 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL 578 (637)
Q Consensus 500 ~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~ 578 (637)
..+.+.+|||+-||.|.+...+..+..+-..++++|+++......+.+....+... ..++.+|+.++.. .
T Consensus 115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~- 185 (305)
T 3ocj_A 115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT--------R- 185 (305)
T ss_dssp HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC--------C-
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc--------c-
Confidence 34567899999999999988873222222357899999999888887664332111 2245677766542 1
Q ss_pred CCccEEEEc
Q 006634 579 GSIDFVICQ 587 (637)
Q Consensus 579 g~~DLVIGG 587 (637)
+.||+|+..
T Consensus 186 ~~fD~v~~~ 194 (305)
T 3ocj_A 186 EGYDLLTSN 194 (305)
T ss_dssp SCEEEEECC
T ss_pred CCeEEEEEC
Confidence 467888743
No 190
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=93.30 E-value=0.076 Score=44.55 Aligned_cols=39 Identities=23% Similarity=0.373 Sum_probs=34.0
Q ss_pred hhhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhhcc
Q 006634 150 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 190 (637)
Q Consensus 150 ~~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~Aaq 190 (637)
.+++..|+.|||++++|..|+.+|+-+ ++.-+++++..+
T Consensus 30 ee~I~~L~eMGF~r~~a~~AL~~~~~n--ve~Ave~Ll~~~ 68 (73)
T 1vg5_A 30 EEQIQKLVAMGFDRTQVEVALAAADDD--LTVAVEILMSQS 68 (73)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTSC--HHHHHHHHHTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHHCC
Confidence 467889999999999999999999975 777788888765
No 191
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=93.29 E-value=0.15 Score=49.38 Aligned_cols=93 Identities=14% Similarity=0.198 Sum_probs=61.5
Q ss_pred cccchhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccc
Q 006634 486 QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA 565 (637)
Q Consensus 486 qvdtv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~ 565 (637)
+...+..++..+.. ..+.+|||+-||.|.+...|.+.+. .++++|+++......+......+.....+..+|+.+
T Consensus 22 ~~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~ 96 (260)
T 1vl5_A 22 KGSDLAKLMQIAAL--KGNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ 96 (260)
T ss_dssp -CCCHHHHHHHHTC--CSCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-C
T ss_pred CHHHHHHHHHHhCC--CCCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHh
Confidence 44455555555532 2467999999999999999988874 578999999988877765543322223356678776
Q ss_pred cChhhHHHhhhccCCccEEEEcCCCC
Q 006634 566 LTTKKFESLIHKLGSIDFVICQNSVP 591 (637)
Q Consensus 566 Lt~~~Ie~l~~~~g~~DLVIGGpPCQ 591 (637)
+.- ..+.||+|+.....+
T Consensus 97 l~~--------~~~~fD~V~~~~~l~ 114 (260)
T 1vl5_A 97 MPF--------TDERFHIVTCRIAAH 114 (260)
T ss_dssp CCS--------CTTCEEEEEEESCGG
T ss_pred CCC--------CCCCEEEEEEhhhhH
Confidence 541 124789998765443
No 192
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=93.25 E-value=0.18 Score=47.36 Aligned_cols=83 Identities=19% Similarity=0.135 Sum_probs=55.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+.+|||+-||.|.+...+.+.+-+-..++++|+++......+......+.....+..+|+...-. ..+.+|
T Consensus 77 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~fD 148 (215)
T 2yxe_A 77 PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE--------PLAPYD 148 (215)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG--------GGCCEE
T ss_pred CCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC--------CCCCee
Confidence 467999999999999988887652112478999999988877776543322222234556532111 135799
Q ss_pred EEEEcCCCCCc
Q 006634 583 FVICQNSVPQI 593 (637)
Q Consensus 583 LVIGGpPCQ~F 593 (637)
+|+...++..+
T Consensus 149 ~v~~~~~~~~~ 159 (215)
T 2yxe_A 149 RIYTTAAGPKI 159 (215)
T ss_dssp EEEESSBBSSC
T ss_pred EEEECCchHHH
Confidence 99988776654
No 193
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=93.25 E-value=0.11 Score=55.26 Aligned_cols=86 Identities=21% Similarity=0.178 Sum_probs=58.1
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCC-----C---CCccccccccccChhhHHH
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-----T---GELVQIEDIQALTTKKFES 573 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~-----~---g~l~~~~DI~~Lt~~~Ie~ 573 (637)
|++-+||+|++|.||+..-+.+.+. .-|..||||+...+..+.|+...+. + ...++.+|..+. +..
T Consensus 187 p~pkrVL~IGgG~G~~arellk~~~--~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~----L~~ 260 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVKLKP--KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPV----LKR 260 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCC--SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHH----HHH
T ss_pred CCCCEEEEEECChhHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHH----HHh
Confidence 5678999999999999988877774 5678999999999999988753221 0 122445555432 221
Q ss_pred hhhccCCccEEEEcCCCCCc
Q 006634 574 LIHKLGSIDFVICQNSVPQI 593 (637)
Q Consensus 574 l~~~~g~~DLVIGGpPCQ~F 593 (637)
+....+.||+||--+|=.++
T Consensus 261 ~~~~~~~fDvII~D~~d~P~ 280 (364)
T 2qfm_A 261 YAKEGREFDYVINDLTAVPI 280 (364)
T ss_dssp HHHHTCCEEEEEEECCSSCC
T ss_pred hhccCCCceEEEECCCCccc
Confidence 11123679999998764333
No 194
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=93.25 E-value=0.078 Score=43.07 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=35.0
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhhccccc
Q 006634 151 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFL 193 (637)
Q Consensus 151 ~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~Aaq~a~ 193 (637)
+++..|+.|||++++|..|+..|+-+ ++.-++.|+..+...
T Consensus 11 ~~I~~L~~MGF~~~~a~~AL~~~~~n--ve~A~e~L~~~~~~~ 51 (63)
T 1wji_A 11 KALKHITEMGFSKEASRQALMDNGNN--LEAALNVLLTSNKQK 51 (63)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHTTSC--HHHHHHHHHHHSSCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHHCCCCc
Confidence 56779999999999999999999974 888899999876433
No 195
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=93.17 E-value=0.18 Score=47.55 Aligned_cols=81 Identities=14% Similarity=0.237 Sum_probs=54.6
Q ss_pred CCcccccCCCCChHHHHHHHc---CCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc-
Q 006634 504 GLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL- 578 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~a---Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~- 578 (637)
+.+|||+-||.|+.++.|.+. +. .++++|+++......+.++...+... ..++.+|+.+. +..+....
T Consensus 65 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~~~~ 137 (225)
T 3tr6_A 65 AKKVIDIGTFTGYSAIAMGLALPKDG---TLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDT----LAELIHAGQ 137 (225)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHHHHTTTC
T ss_pred CCEEEEeCCcchHHHHHHHHhCCCCC---EEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHH----HHHhhhccC
Confidence 468999999999999998876 43 47899999999988888776543222 22445665432 21111111
Q ss_pred -CCccEEEEcCCCC
Q 006634 579 -GSIDFVICQNSVP 591 (637)
Q Consensus 579 -g~~DLVIGGpPCQ 591 (637)
+.||+|+--+|..
T Consensus 138 ~~~fD~v~~~~~~~ 151 (225)
T 3tr6_A 138 AWQYDLIYIDADKA 151 (225)
T ss_dssp TTCEEEEEECSCGG
T ss_pred CCCccEEEECCCHH
Confidence 5799999665543
No 196
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=93.16 E-value=0.11 Score=50.38 Aligned_cols=84 Identities=14% Similarity=0.075 Sum_probs=55.6
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+.+|||+.||.|.+.+.+.+.+-. ..+++||+++.+....+.+....+.....++.+|+.++- ... ...+.+|
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~-~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l----~~~-~~~~~~d 107 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPE-QDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVL----HKM-IPDNSLR 107 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHH----HHH-SCTTCEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCC-CeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHH----HHH-cCCCChh
Confidence 3568999999999999998876532 247899999998877776554332222334566665431 111 1235799
Q ss_pred EEEEcCCCCC
Q 006634 583 FVICQNSVPQ 592 (637)
Q Consensus 583 LVIGGpPCQ~ 592 (637)
+|+--+|+.-
T Consensus 108 ~v~~~~~~p~ 117 (218)
T 3dxy_A 108 MVQLFFPDPW 117 (218)
T ss_dssp EEEEESCCCC
T ss_pred eEEEeCCCCc
Confidence 9998776553
No 197
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=93.14 E-value=0.16 Score=40.14 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHH
Q 006634 79 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT 115 (637)
Q Consensus 79 ~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~ 115 (637)
+.|..|++|||+.++|.+|+....-+ ++.-..+|+
T Consensus 13 ~~Ia~Lm~mGFsr~~ai~AL~~a~nn--ve~AaniLl 47 (52)
T 2ooa_A 13 AKIAKLMGEGYAFEEVKRALEIAQNN--VEVARSILR 47 (52)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTC--HHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHH
Confidence 68999999999999999999999876 344444444
No 198
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=93.13 E-value=0.1 Score=49.91 Aligned_cols=94 Identities=17% Similarity=0.162 Sum_probs=59.5
Q ss_pred hhhhccccccCCCCCcccccCCCCChHHHHHHH-cCC-----ceeeEEEeecCHHHHHHHHHHhhhcC-----CCCCccc
Q 006634 491 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGI-----KLKGVISIETSETNRRILKRWWESSG-----QTGELVQ 559 (637)
Q Consensus 491 ~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~-aGi-----~~k~vvaVEid~~a~~t~r~~~~~tn-----~~g~l~~ 559 (637)
+..+..|......+.+|||+-||.|.+...|.+ .|. . ..++++|+++...+..+.+....+ .....+.
T Consensus 72 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~ 150 (227)
T 1r18_A 72 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDAD-TRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIV 150 (227)
T ss_dssp HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTT-CEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCcc-CEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEE
Confidence 333444543344567999999999999988876 341 0 147899999998887766543221 1112244
Q ss_pred cccccccChhhHHHhhhccCCccEEEEcCCCCCc
Q 006634 560 IEDIQALTTKKFESLIHKLGSIDFVICQNSVPQI 593 (637)
Q Consensus 560 ~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~F 593 (637)
.+|+.+.-. ..+.||+|+...++..+
T Consensus 151 ~~d~~~~~~--------~~~~fD~I~~~~~~~~~ 176 (227)
T 1r18_A 151 EGDGRKGYP--------PNAPYNAIHVGAAAPDT 176 (227)
T ss_dssp ESCGGGCCG--------GGCSEEEEEECSCBSSC
T ss_pred ECCcccCCC--------cCCCccEEEECCchHHH
Confidence 566654111 12579999988887665
No 199
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=93.11 E-value=0.17 Score=48.82 Aligned_cols=84 Identities=13% Similarity=0.015 Sum_probs=58.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+.+|||+-||.|.....|.+++- -..++++|+++...+..+.++...+.. ...++.+|+.++-.. .+ .+.|
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~---~~~f 143 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFEN---VN---DKVY 143 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHH---HT---TSCE
T ss_pred CCCEEEEEeCchhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHh---hc---cCCc
Confidence 357899999999999999988432 235789999999999888887654332 223456777654220 11 2579
Q ss_pred cEEEEcCCCCCc
Q 006634 582 DFVICQNSVPQI 593 (637)
Q Consensus 582 DLVIGGpPCQ~F 593 (637)
|+|+-..++..+
T Consensus 144 D~V~~~~~~~~~ 155 (232)
T 3ntv_A 144 DMIFIDAAKAQS 155 (232)
T ss_dssp EEEEEETTSSSH
T ss_pred cEEEEcCcHHHH
Confidence 999987776654
No 200
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=93.10 E-value=0.11 Score=50.74 Aligned_cols=78 Identities=15% Similarity=0.132 Sum_probs=53.5
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCC
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
+.+.+|||+-||.|++...+.+.|. ..++++|+++......+......+. ....+...|+.++.-. ..+.
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~~ 133 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-------LGKE 133 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-------CSSC
T ss_pred CCCCeEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccC-------CCCC
Confidence 4578999999999999999988885 3578999999998888776543321 1122456677654210 1246
Q ss_pred ccEEEEcC
Q 006634 581 IDFVICQN 588 (637)
Q Consensus 581 ~DLVIGGp 588 (637)
||+|+...
T Consensus 134 fD~v~~~~ 141 (298)
T 1ri5_A 134 FDVISSQF 141 (298)
T ss_dssp EEEEEEES
T ss_pred cCEEEECc
Confidence 78887654
No 201
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=93.10 E-value=0.094 Score=53.31 Aligned_cols=81 Identities=14% Similarity=0.194 Sum_probs=53.7
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhc----CCCCCccccccccccChhhHHHhhh
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIH 576 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~t----n~~g~l~~~~DI~~Lt~~~Ie~l~~ 576 (637)
+.+.+||+|.||.|++...+.+. +. ..+++||+|+...+..+.++... +.....++.+|+.+.-. .
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~-------~ 159 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSV--EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR-------K 159 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTC--SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG-------G
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCC--CEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh-------h
Confidence 35579999999999999888776 33 45789999999999888876421 11222345566543211 1
Q ss_pred ccCCccEEEEcCCCC
Q 006634 577 KLGSIDFVICQNSVP 591 (637)
Q Consensus 577 ~~g~~DLVIGGpPCQ 591 (637)
..+.||+|+..+||.
T Consensus 160 ~~~~fD~Ii~d~~~~ 174 (296)
T 1inl_A 160 FKNEFDVIIIDSTDP 174 (296)
T ss_dssp CSSCEEEEEEEC---
T ss_pred CCCCceEEEEcCCCc
Confidence 125799999888774
No 202
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=93.09 E-value=0.18 Score=47.19 Aligned_cols=73 Identities=22% Similarity=0.145 Sum_probs=54.1
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+.+|||+-||.|.+...|.+.|.. ++++|+++......+.... ....+..+|+.++... +.||
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~~---------~~fD 108 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAGRT---VYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEVP---------TSID 108 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTTCE---EEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCCC---------SCCS
T ss_pred CCCeEEEeCCCCCHHHHHHHhCCCe---EEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCCC---------CCeE
Confidence 4678999999999999999998863 6899999998887765432 1233567788776421 4789
Q ss_pred EEEEcCCCC
Q 006634 583 FVICQNSVP 591 (637)
Q Consensus 583 LVIGGpPCQ 591 (637)
+|+......
T Consensus 109 ~v~~~~~l~ 117 (220)
T 3hnr_A 109 TIVSTYAFH 117 (220)
T ss_dssp EEEEESCGG
T ss_pred EEEECcchh
Confidence 998765433
No 203
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=93.07 E-value=0.11 Score=52.58 Aligned_cols=81 Identities=15% Similarity=0.073 Sum_probs=55.3
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
+.+.+||||-||.|.+++.|.+.|.+ |+++|+++......+...... .+..|+.+++..... ...+.|
T Consensus 44 ~~g~~VLDlGcGtG~~a~~La~~g~~---V~gvD~S~~ml~~Ar~~~~~~------~v~~~~~~~~~~~~~---~~~~~f 111 (261)
T 3iv6_A 44 VPGSTVAVIGASTRFLIEKALERGAS---VTVFDFSQRMCDDLAEALADR------CVTIDLLDITAEIPK---ELAGHF 111 (261)
T ss_dssp CTTCEEEEECTTCHHHHHHHHHTTCE---EEEEESCHHHHHHHHHHTSSS------CCEEEECCTTSCCCG---GGTTCC
T ss_pred CCcCEEEEEeCcchHHHHHHHhcCCE---EEEEECCHHHHHHHHHHHHhc------cceeeeeeccccccc---ccCCCc
Confidence 35679999999999999999999863 789999999988887643211 234555555430000 012579
Q ss_pred cEEEEcCCCCCcC
Q 006634 582 DFVICQNSVPQIP 594 (637)
Q Consensus 582 DLVIGGpPCQ~FS 594 (637)
|+|+.....+.|.
T Consensus 112 D~Vv~~~~l~~~~ 124 (261)
T 3iv6_A 112 DFVLNDRLINRFT 124 (261)
T ss_dssp SEEEEESCGGGSC
T ss_pred cEEEEhhhhHhCC
Confidence 9999876555443
No 204
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=93.04 E-value=0.14 Score=51.01 Aligned_cols=74 Identities=19% Similarity=0.118 Sum_probs=52.1
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhh-----------------cCCCCCccccccccc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES-----------------SGQTGELVQIEDIQA 565 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~-----------------tn~~g~l~~~~DI~~ 565 (637)
.+.+|||+=||.|....-|.+.|+. |++||+++.+.+..+..... .......++.+|+.+
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~G~~---V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADRGHT---VVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHTTCE---EEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCeEEEeCCCCcHHHHHHHHCCCe---EEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 4679999999999999999999984 78999999998877543210 001122345678876
Q ss_pred cChhhHHHhhhccCCccEEEE
Q 006634 566 LTTKKFESLIHKLGSIDFVIC 586 (637)
Q Consensus 566 Lt~~~Ie~l~~~~g~~DLVIG 586 (637)
+... ..+.||+|+.
T Consensus 145 l~~~-------~~~~FD~V~~ 158 (252)
T 2gb4_A 145 LPRA-------NIGKFDRIWD 158 (252)
T ss_dssp GGGG-------CCCCEEEEEE
T ss_pred CCcc-------cCCCEEEEEE
Confidence 6532 1257999984
No 205
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=93.01 E-value=0.17 Score=48.30 Aligned_cols=82 Identities=17% Similarity=0.063 Sum_probs=55.1
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+.+|||+-||.|.+.+.+.+.. +-..+++||+++.+....+.+....+.....++.+|+.++. ..+ ..+.+|
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~-----~~~-~~~~~d 110 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT-----DVF-EPGEVK 110 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHH-----HHC-CTTSCC
T ss_pred CCceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHH-----hhc-CcCCcC
Confidence 35789999999999999988762 11247899999999887776654433222335667776532 111 124689
Q ss_pred EEEEcCCCC
Q 006634 583 FVICQNSVP 591 (637)
Q Consensus 583 LVIGGpPCQ 591 (637)
.|+-.+|+.
T Consensus 111 ~v~~~~~~p 119 (213)
T 2fca_A 111 RVYLNFSDP 119 (213)
T ss_dssp EEEEESCCC
T ss_pred EEEEECCCC
Confidence 988777654
No 206
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=93.00 E-value=0.22 Score=46.85 Aligned_cols=46 Identities=11% Similarity=0.030 Sum_probs=38.1
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhh
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 549 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~ 549 (637)
.+.+|||+-||.|.+...|.+.|-. ..++++|+++.+....+..+.
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~ 74 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLKDKSF-EQITGVDVSYSVLERAKDRLK 74 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHHTSTTC-CEEEEEESCHHHHHHHHHHHT
T ss_pred CCCEEEEecCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHHHH
Confidence 3579999999999999999988732 357899999999888877654
No 207
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=92.99 E-value=0.11 Score=49.36 Aligned_cols=73 Identities=16% Similarity=0.146 Sum_probs=51.1
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006634 501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
++.+.+|||+-||.|.+...+.+. . .++++|+++......+......+ ....+...|+.++.. .+.
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~-~---~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~---------~~~ 96 (243)
T 3d2l_A 31 VEPGKRIADIGCGTGTATLLLADH-Y---EVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMRELEL---------PEP 96 (243)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT-S---EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGGCCC---------SSC
T ss_pred cCCCCeEEEecCCCCHHHHHHhhC-C---eEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhhcCC---------CCC
Confidence 444579999999999999888877 3 47899999999888877654332 222345667765531 146
Q ss_pred ccEEEEc
Q 006634 581 IDFVICQ 587 (637)
Q Consensus 581 ~DLVIGG 587 (637)
+|+|+..
T Consensus 97 fD~v~~~ 103 (243)
T 3d2l_A 97 VDAITIL 103 (243)
T ss_dssp EEEEEEC
T ss_pred cCEEEEe
Confidence 8888753
No 208
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=92.98 E-value=0.08 Score=49.66 Aligned_cols=72 Identities=11% Similarity=-0.016 Sum_probs=53.7
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+.+|||+-||.|.+...|.+.|. .++++|+++.+....+...... ....++..|+.++.. .+.||
T Consensus 51 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~---------~~~fD 116 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKLAPHCK---RLTVIDVMPRAIGRACQRTKRW--SHISWAATDILQFST---------AELFD 116 (216)
T ss_dssp SEEEEEEECCTTSHHHHHHGGGEE---EEEEEESCHHHHHHHHHHTTTC--SSEEEEECCTTTCCC---------SCCEE
T ss_pred CCCcEEEEcCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhcccC--CCeEEEEcchhhCCC---------CCCcc
Confidence 457899999999999999998874 4789999999988887654321 122356778876652 25799
Q ss_pred EEEEcC
Q 006634 583 FVICQN 588 (637)
Q Consensus 583 LVIGGp 588 (637)
+|+...
T Consensus 117 ~v~~~~ 122 (216)
T 3ofk_A 117 LIVVAE 122 (216)
T ss_dssp EEEEES
T ss_pred EEEEcc
Confidence 999753
No 209
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=92.96 E-value=0.14 Score=52.42 Aligned_cols=81 Identities=11% Similarity=0.131 Sum_probs=55.2
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcC-----CCCCccccccccccChhhHHHhhh
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQALTTKKFESLIH 576 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn-----~~g~l~~~~DI~~Lt~~~Ie~l~~ 576 (637)
+++-+||+|-||.|++...+.+.. ....|++||||+...++.+.++...+ .+...++.+|..+.-..
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~------- 153 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ------- 153 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCT-TCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---C-------
T ss_pred CCCCEEEEEeCChhHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhh-------
Confidence 456799999999999998888762 23568899999999999888765431 12233566777654211
Q ss_pred ccCCccEEEEcCCC
Q 006634 577 KLGSIDFVICQNSV 590 (637)
Q Consensus 577 ~~g~~DLVIGGpPC 590 (637)
..+.||+||.-+|.
T Consensus 154 ~~~~fDvIi~D~~~ 167 (294)
T 3adn_A 154 TSQTFDVIISDCTD 167 (294)
T ss_dssp CCCCEEEEEECC--
T ss_pred cCCCccEEEECCCC
Confidence 12579999986553
No 210
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=92.96 E-value=0.13 Score=58.83 Aligned_cols=82 Identities=13% Similarity=0.145 Sum_probs=54.5
Q ss_pred CCCcccccCCCCChHHHHHHHcC------Cc-----------------------------------eeeEEEeecCHHHH
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLG------IK-----------------------------------LKGVISIETSETNR 541 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aG------i~-----------------------------------~k~vvaVEid~~a~ 541 (637)
.+.+++|.|||.|++.+.+...+ +. -..++++|+|+.+.
T Consensus 190 ~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av 269 (703)
T 3v97_A 190 PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVI 269 (703)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHH
T ss_pred CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHH
Confidence 45789999999999976544332 10 02478999999999
Q ss_pred HHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCccEEEEcCCC
Q 006634 542 RILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV 590 (637)
Q Consensus 542 ~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPC 590 (637)
++-+.+....+-.. ..+..+|+.++.... ..+.+|+||.-||=
T Consensus 270 ~~A~~N~~~agv~~~i~~~~~D~~~~~~~~------~~~~~d~Iv~NPPY 313 (703)
T 3v97_A 270 QRARTNARLAGIGELITFEVKDVAQLTNPL------PKGPYGTVLSNPPY 313 (703)
T ss_dssp HHHHHHHHHTTCGGGEEEEECCGGGCCCSC------TTCCCCEEEECCCC
T ss_pred HHHHHHHHHcCCCCceEEEECChhhCcccc------ccCCCCEEEeCCCc
Confidence 98888766543222 224567777654210 11379999999983
No 211
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=92.93 E-value=0.23 Score=47.69 Aligned_cols=77 Identities=13% Similarity=0.066 Sum_probs=50.1
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+.+||||-||.|.+...|.+. | . ..|+++|+++.+.+..+.+.... ....++.+|+.+... .....+.|
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~~~-~-~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~-----~~~~~~~~ 144 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADIAD-K-GIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQE-----YANIVEKV 144 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTT-T-SEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGG-----GTTTSCCE
T ss_pred CCCEEEEEcccCCHHHHHHHHHcC-C-cEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCCCCccc-----ccccCccE
Confidence 4678999999999999888765 5 2 35789999999887776643221 222345677765211 00001578
Q ss_pred cEEEEcC
Q 006634 582 DFVICQN 588 (637)
Q Consensus 582 DLVIGGp 588 (637)
|+|+...
T Consensus 145 D~v~~~~ 151 (230)
T 1fbn_A 145 DVIYEDV 151 (230)
T ss_dssp EEEEECC
T ss_pred EEEEEec
Confidence 9998443
No 212
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=92.93 E-value=0.15 Score=48.76 Aligned_cols=72 Identities=8% Similarity=-0.013 Sum_probs=52.3
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCcccccccc-ccChhhHHHhhhccCC
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQ-ALTTKKFESLIHKLGS 580 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~-~Lt~~~Ie~l~~~~g~ 580 (637)
+.+.+|||+-||.|.+...+.+.|. .|+++|+++......+.. .....++..|+. .+.. ...+.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~-------~~~~~ 111 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAA---RWAAYDFSPELLKLARAN-----APHADVYEWNGKGELPA-------GLGAP 111 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSCCT-------TCCCC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHh-----CCCceEEEcchhhccCC-------cCCCC
Confidence 4568999999999999999999886 478999999988877654 222335677874 2221 00257
Q ss_pred ccEEEEcC
Q 006634 581 IDFVICQN 588 (637)
Q Consensus 581 ~DLVIGGp 588 (637)
||+|+..+
T Consensus 112 fD~v~~~~ 119 (226)
T 3m33_A 112 FGLIVSRR 119 (226)
T ss_dssp EEEEEEES
T ss_pred EEEEEeCC
Confidence 99999764
No 213
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=92.92 E-value=0.2 Score=49.87 Aligned_cols=73 Identities=18% Similarity=0.233 Sum_probs=53.4
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccC
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG 579 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g 579 (637)
+.+.+|||+-||.|++...+.+. |. .|+++|+++......+......+.. ...+..+|+.++ .+
T Consensus 71 ~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----------~~ 136 (302)
T 3hem_A 71 EPGMTLLDIGCGWGSTMRHAVAEYDV---NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-----------DE 136 (302)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-----------CC
T ss_pred CCcCEEEEeeccCcHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-----------CC
Confidence 34679999999999999998877 84 3789999999988887766543322 122456777665 14
Q ss_pred CccEEEEcC
Q 006634 580 SIDFVICQN 588 (637)
Q Consensus 580 ~~DLVIGGp 588 (637)
.||+|+...
T Consensus 137 ~fD~v~~~~ 145 (302)
T 3hem_A 137 PVDRIVSLG 145 (302)
T ss_dssp CCSEEEEES
T ss_pred CccEEEEcc
Confidence 789988653
No 214
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=92.90 E-value=0.17 Score=53.99 Aligned_cols=41 Identities=17% Similarity=0.083 Sum_probs=35.2
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhh
Q 006634 76 LHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 118 (637)
Q Consensus 76 ~~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q 118 (637)
+..+.|..|+.|||++..|.+|+..|+-+- +.=+++|+.+.
T Consensus 324 ee~eaI~rL~~mGF~~~~a~~al~a~~~n~--e~A~~~L~~~~ 364 (368)
T 1oqy_A 324 QEKEAIERLKALGFPESLVIQAYFACEKNE--NLAANFLLSQN 364 (368)
T ss_dssp TTHHHHHHHHHHTCCSHHHHHHTSSSSSCS--SHHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHcCCCH--HHHHHHHhhCc
Confidence 456789999999999999999999999764 56689999763
No 215
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=92.90 E-value=0.11 Score=51.33 Aligned_cols=79 Identities=14% Similarity=0.177 Sum_probs=52.6
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
+.+.+|||+-||.|...+.+..+.=. ..|+++|+++.+....+.+....+.....++.+|+.++.... ...+.|
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~-----~~~~~f 152 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPE-LELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREA-----GHREAY 152 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTST-----TTTTCE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhccc-----ccCCCc
Confidence 45789999999999888877765211 247899999999998887765443222334556665543210 012579
Q ss_pred cEEEE
Q 006634 582 DFVIC 586 (637)
Q Consensus 582 DLVIG 586 (637)
|+|+.
T Consensus 153 D~I~s 157 (249)
T 3g89_A 153 ARAVA 157 (249)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 99985
No 216
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=92.86 E-value=0.083 Score=38.20 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=23.9
Q ss_pred hhhHHHHHhcCCCHHHHHHHHHhhCCC
Q 006634 150 MEITLQLLEMGFSENQVSLAIEKFGSK 176 (637)
Q Consensus 150 ~~k~~~L~~MGfseeEas~Ai~r~G~d 176 (637)
.+++..|+.|||++++|..|+..|+-+
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~~~n 31 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAANGD 31 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence 357779999999999999999999865
No 217
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=92.85 E-value=0.21 Score=49.85 Aligned_cols=53 Identities=17% Similarity=0.084 Sum_probs=43.3
Q ss_pred cccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhc
Q 006634 498 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS 551 (637)
Q Consensus 498 K~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~t 551 (637)
.++.+.+-+|+|+=||.|-+.+.+.+.|. ...|+|+|+++.+....+.+....
T Consensus 16 ~~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~AvDi~~~al~~A~~N~~~~ 68 (230)
T 3lec_A 16 ANYVPKGARLLDVGSDHAYLPIFLLQMGY-CDFAIAGEVVNGPYQSALKNVSEH 68 (230)
T ss_dssp HTTSCTTEEEEEETCSTTHHHHHHHHTTC-EEEEEEEESSHHHHHHHHHHHHHT
T ss_pred HHhCCCCCEEEEECCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHc
Confidence 34455678999999999999999999884 346889999999999888876544
No 218
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=92.79 E-value=0.15 Score=51.32 Aligned_cols=80 Identities=16% Similarity=0.172 Sum_probs=55.6
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhc----CCCCCccccccccccChhhHHHhhh
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIH 576 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~t----n~~g~l~~~~DI~~Lt~~~Ie~l~~ 576 (637)
+++.+||+|.||.|++...+.+. |. .-+++||+|+...+..+.++... +.+...++.+|..+. +. .
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~----l~---~ 144 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSV--KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH----IA---K 144 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTC--SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH----HH---T
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCC--ceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH----Hh---h
Confidence 45689999999999998888776 43 45889999999999998876431 112223455665431 11 1
Q ss_pred ccCCccEEEEcCCC
Q 006634 577 KLGSIDFVICQNSV 590 (637)
Q Consensus 577 ~~g~~DLVIGGpPC 590 (637)
..+.+|+|+-.+|.
T Consensus 145 ~~~~fD~Ii~d~~~ 158 (275)
T 1iy9_A 145 SENQYDVIMVDSTE 158 (275)
T ss_dssp CCSCEEEEEESCSS
T ss_pred CCCCeeEEEECCCC
Confidence 12579999987765
No 219
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=92.78 E-value=0.19 Score=52.63 Aligned_cols=74 Identities=16% Similarity=0.186 Sum_probs=53.0
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+.+||||.||.|.+++.+.++|. +-|++||++ ......+.+....+... ..++.+|+.++... +.|
T Consensus 63 ~~~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---------~~~ 130 (376)
T 3r0q_C 63 EGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP---------EKV 130 (376)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTC--SEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS---------SCE
T ss_pred CCCEEEEeccCcCHHHHHHHhcCC--CEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC---------Ccc
Confidence 467899999999999999999986 357899999 55555555544332222 23567888776521 579
Q ss_pred cEEEEcC
Q 006634 582 DFVICQN 588 (637)
Q Consensus 582 DLVIGGp 588 (637)
|+|+..+
T Consensus 131 D~Iv~~~ 137 (376)
T 3r0q_C 131 DVIISEW 137 (376)
T ss_dssp EEEEECC
T ss_pred eEEEEcC
Confidence 9999744
No 220
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=92.69 E-value=0.082 Score=45.44 Aligned_cols=39 Identities=26% Similarity=0.309 Sum_probs=34.9
Q ss_pred hhhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhhcc
Q 006634 150 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 190 (637)
Q Consensus 150 ~~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~Aaq 190 (637)
.+++..|+.|||++++|..|+..+|-+ ++.-+++++.-+
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~t~gd--ve~A~e~L~sh~ 68 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRVFGGN--VQLAAQTLAHHG 68 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHTTTC--HHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence 368889999999999999999999988 888899999854
No 221
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=92.64 E-value=0.26 Score=47.33 Aligned_cols=81 Identities=23% Similarity=0.271 Sum_probs=54.0
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+.+|||+.||.|.+...+.+.+- ..++++|+++...+..+.+....+.....+..+|+. .. +. ..+.||
T Consensus 91 ~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~---~~----~~~~fD 160 (235)
T 1jg1_A 91 PGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGS-KG---FP----PKAPYD 160 (235)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG-GC---CG----GGCCEE
T ss_pred CCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcc-cC---CC----CCCCcc
Confidence 457899999999999998887652 247899999998888777654332222223455551 11 11 123589
Q ss_pred EEEEcCCCCCc
Q 006634 583 FVICQNSVPQI 593 (637)
Q Consensus 583 LVIGGpPCQ~F 593 (637)
+|+...++..+
T Consensus 161 ~Ii~~~~~~~~ 171 (235)
T 1jg1_A 161 VIIVTAGAPKI 171 (235)
T ss_dssp EEEECSBBSSC
T ss_pred EEEECCcHHHH
Confidence 99988776655
No 222
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=92.63 E-value=0.13 Score=49.51 Aligned_cols=75 Identities=16% Similarity=0.112 Sum_probs=52.0
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+.+|||+-||.|.+...|.+.+. ..++++|+++...+..+.+....+ ....++.+|+.++.. . ...+.||
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~----~--~~~~~fD 130 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAP----T--LPDGHFD 130 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGG----G--SCTTCEE
T ss_pred CCCeEEEEeccCCHHHHHHHhcCC--CeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEecCHHHhhc----c--cCCCceE
Confidence 467999999999999999987764 367899999999888887654321 222234566654311 0 0125799
Q ss_pred EEEE
Q 006634 583 FVIC 586 (637)
Q Consensus 583 LVIG 586 (637)
+|+.
T Consensus 131 ~V~~ 134 (236)
T 1zx0_A 131 GILY 134 (236)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9997
No 223
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=92.60 E-value=0.16 Score=38.83 Aligned_cols=39 Identities=21% Similarity=0.102 Sum_probs=32.0
Q ss_pred hhhHHHHHHHhcCCC-HHHHHHHHHHhCCCCcHHHHHHHHHH
Q 006634 76 LHIEKRASLLMMNFS-VNEVDFALDKLGKDAPVYELVDFITA 116 (637)
Q Consensus 76 ~~~~~~~~lv~MGF~-~eeV~~AI~~~G~da~i~~Lld~I~a 116 (637)
....++..|+.|||+ ++.+..|+..++-+ ++.-+|+|++
T Consensus 6 ~~~~~i~~L~~MGF~d~~~~~~AL~~~~gn--v~~Ave~L~~ 45 (46)
T 2bwb_A 6 RYEHQLRQLNDMGFFDFDRNVAALRRSGGS--VQGALDSLLN 45 (46)
T ss_dssp HTHHHHHHHHHTTCCCHHHHHHHHHHHTTC--HHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHhCCC--HHHHHHHHHc
Confidence 456788999999996 56689999999965 5788898874
No 224
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=92.59 E-value=0.22 Score=48.79 Aligned_cols=79 Identities=22% Similarity=0.225 Sum_probs=53.8
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhc-C--CCCCccccccccccChhhHHHhhhcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS-G--QTGELVQIEDIQALTTKKFESLIHKL 578 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~t-n--~~g~l~~~~DI~~Lt~~~Ie~l~~~~ 578 (637)
.+.+|||+.||.|.+...+.++ |-. ..++++|+++.+....+.+.... + .....+..+|+.++.. ..
T Consensus 99 ~~~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~--------~~ 169 (280)
T 1i9g_A 99 PGARVLEAGAGSGALTLSLLRAVGPA-GQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL--------PD 169 (280)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC--------CT
T ss_pred CCCEEEEEcccccHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC--------CC
Confidence 4578999999999999998874 311 24789999999988887765432 1 1122345677765421 12
Q ss_pred CCccEEEEcCCC
Q 006634 579 GSIDFVICQNSV 590 (637)
Q Consensus 579 g~~DLVIGGpPC 590 (637)
+.+|+|+...|.
T Consensus 170 ~~~D~v~~~~~~ 181 (280)
T 1i9g_A 170 GSVDRAVLDMLA 181 (280)
T ss_dssp TCEEEEEEESSC
T ss_pred CceeEEEECCcC
Confidence 479999987663
No 225
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=92.57 E-value=0.1 Score=58.16 Aligned_cols=84 Identities=12% Similarity=0.082 Sum_probs=52.3
Q ss_pred CCCcccccCCCCChHHHHHHHc-C-CceeeEEEeecCHHHHHHHHHHhhhcCCC--CCccccccccccChhhHHHhhhcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL-G-IKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKL 578 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a-G-i~~k~vvaVEid~~a~~t~r~~~~~tn~~--g~l~~~~DI~~Lt~~~Ie~l~~~~ 578 (637)
.+.+|+|.+||.|||-+.+.+. . ..-..++++|+++.+.++.+.+..-++.. ...+..+|.-..+- . ....
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~---p--~~~~ 295 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDW---P--TQEP 295 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCS---C--CSSC
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccc---c--cccc
Confidence 4689999999999998766543 1 01235899999999988877654333211 11233444332210 0 0123
Q ss_pred CCccEEEEcCCCC
Q 006634 579 GSIDFVICQNSVP 591 (637)
Q Consensus 579 g~~DLVIGGpPCQ 591 (637)
+.||+|+|-||-.
T Consensus 296 ~~fD~IvaNPPf~ 308 (542)
T 3lkd_A 296 TNFDGVLMNPPYS 308 (542)
T ss_dssp CCBSEEEECCCTT
T ss_pred ccccEEEecCCcC
Confidence 5799999999975
No 226
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=92.56 E-value=0.095 Score=43.73 Aligned_cols=39 Identities=26% Similarity=0.404 Sum_probs=33.6
Q ss_pred hhhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhhcc
Q 006634 150 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 190 (637)
Q Consensus 150 ~~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~Aaq 190 (637)
.+++..|+.|||++++|..|+..||- .++.=++.|+..+
T Consensus 30 ~~~v~~L~~MGF~~~~a~~AL~~t~~--nve~Ave~L~~~~ 68 (73)
T 1wiv_A 30 QSSVDTLLSFGFAEDVARKALKASGG--DIEKATDWVFNNS 68 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTS--CHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC--CHHHHHHHHHhCC
Confidence 36777999999999999999999997 5777788888755
No 227
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=92.54 E-value=0.094 Score=49.59 Aligned_cols=73 Identities=15% Similarity=0.144 Sum_probs=50.8
Q ss_pred cccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhh
Q 006634 496 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI 575 (637)
Q Consensus 496 vLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~ 575 (637)
.|+.+.+.+.+|||+-||.|.+...|.+.|. .++++|+++......+.... ...+...|+.++..
T Consensus 33 ~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~------- 97 (239)
T 3bxo_A 33 LVRSRTPEASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRLP-----DATLHQGDMRDFRL------- 97 (239)
T ss_dssp HHHHHCTTCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHCT-----TCEEEECCTTTCCC-------
T ss_pred HHHHhcCCCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhCC-----CCEEEECCHHHccc-------
Confidence 3444445678999999999999999998875 47889999998887765431 12245566655431
Q ss_pred hccCCccEEE
Q 006634 576 HKLGSIDFVI 585 (637)
Q Consensus 576 ~~~g~~DLVI 585 (637)
.+.+|+|+
T Consensus 98 --~~~~D~v~ 105 (239)
T 3bxo_A 98 --GRKFSAVV 105 (239)
T ss_dssp --SSCEEEEE
T ss_pred --CCCCcEEE
Confidence 13577777
No 228
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=92.46 E-value=0.15 Score=50.79 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=51.2
Q ss_pred CcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCC---CCCccccccccccChhhHHHhhhccCCc
Q 006634 505 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ---TGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 505 l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~---~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
-+||||-||.|.+...|.+.|.. |+++|+++......+......+. ....++.+|+.++.. .+.|
T Consensus 84 ~~vLDlGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~---------~~~f 151 (299)
T 3g2m_A 84 GPVLELAAGMGRLTFPFLDLGWE---VTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL---------DKRF 151 (299)
T ss_dssp SCEEEETCTTTTTHHHHHTTTCC---EEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC---------SCCE
T ss_pred CcEEEEeccCCHHHHHHHHcCCe---EEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc---------CCCc
Confidence 49999999999999999999864 68999999998888776543210 122356778876542 2468
Q ss_pred cEEEE
Q 006634 582 DFVIC 586 (637)
Q Consensus 582 DLVIG 586 (637)
|+|+.
T Consensus 152 D~v~~ 156 (299)
T 3g2m_A 152 GTVVI 156 (299)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 87773
No 229
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=92.45 E-value=0.23 Score=46.98 Aligned_cols=74 Identities=22% Similarity=0.205 Sum_probs=50.9
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+.+|||+-||.|.+...+.+.|.. .++++|+++......+..... ....+...|+.++.. ..+.||
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~--------~~~~fD 109 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSEKMLARARAAGPD---TGITYERADLDKLHL--------PQDSFD 109 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCCC--------CTTCEE
T ss_pred CCCEEEEEcCcCCHHHHHHHHCCCC--eEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhccC--------CCCCce
Confidence 4578999999999999999999862 478999999988877654321 122245566665431 124577
Q ss_pred EEEEcCC
Q 006634 583 FVICQNS 589 (637)
Q Consensus 583 LVIGGpP 589 (637)
+|+....
T Consensus 110 ~v~~~~~ 116 (243)
T 3bkw_A 110 LAYSSLA 116 (243)
T ss_dssp EEEEESC
T ss_pred EEEEecc
Confidence 7776543
No 230
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=92.44 E-value=0.23 Score=50.06 Aligned_cols=53 Identities=11% Similarity=-0.104 Sum_probs=43.2
Q ss_pred cccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhc
Q 006634 498 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS 551 (637)
Q Consensus 498 K~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~t 551 (637)
.++.+.+-+|+|+=||.|-+.+.+.+.|- ...|+++|+++.+....+.+....
T Consensus 16 ~~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~ 68 (244)
T 3gnl_A 16 ASYITKNERIADIGSDHAYLPCFAVKNQT-ASFAIAGEVVDGPFQSAQKQVRSS 68 (244)
T ss_dssp HTTCCSSEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHT
T ss_pred HHhCCCCCEEEEECCccHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHc
Confidence 34455678999999999999999999884 346899999999999888776543
No 231
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=92.39 E-value=0.3 Score=46.74 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=49.3
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+.+|||+.||.|++...|.+. |-. ..++++|+++.+...+...-.. + ....++.+|+.+... +. ...+.|
T Consensus 77 ~~~~vLDlG~G~G~~~~~la~~~g~~-~~v~gvD~s~~~i~~~~~~a~~-~-~~v~~~~~d~~~~~~--~~---~~~~~~ 148 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVSDIVGPD-GLVYAVEFSHRSGRDLINLAKK-R-TNIIPVIEDARHPHK--YR---MLIAMV 148 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEECCCHHHHHHHHHHHHH-C-TTEEEECSCTTCGGG--GG---GGCCCE
T ss_pred CCCEEEEEcccCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHhhc-c-CCeEEEEcccCChhh--hc---ccCCcE
Confidence 4678999999999999888765 311 2478999998754433332222 1 223355677765321 11 113579
Q ss_pred cEEEEcCC
Q 006634 582 DFVICQNS 589 (637)
Q Consensus 582 DLVIGGpP 589 (637)
|+|+..+|
T Consensus 149 D~V~~~~~ 156 (233)
T 2ipx_A 149 DVIFADVA 156 (233)
T ss_dssp EEEEECCC
T ss_pred EEEEEcCC
Confidence 99998655
No 232
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=92.37 E-value=0.25 Score=50.89 Aligned_cols=76 Identities=17% Similarity=0.163 Sum_probs=54.5
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 583 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 583 (637)
+-+||||-||.|.+...+.+.|-.. .++++|+++.+....+.+....+.. ..+...|+.+.. .+.||+
T Consensus 197 ~~~VLDlGcG~G~~~~~la~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~d~~~~~----------~~~fD~ 264 (343)
T 2pjd_A 197 KGKVLDVGCGAGVLSVAFARHSPKI-RLTLCDVSAPAVEASRATLAANGVE-GEVFASNVFSEV----------KGRFDM 264 (343)
T ss_dssp CSBCCBTTCTTSHHHHHHHHHCTTC-BCEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTC----------CSCEEE
T ss_pred CCeEEEecCccCHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHhCCC-CEEEEccccccc----------cCCeeE
Confidence 3589999999999999998887432 4689999999888887766543222 223455654321 247999
Q ss_pred EEEcCCCC
Q 006634 584 VICQNSVP 591 (637)
Q Consensus 584 VIGGpPCQ 591 (637)
|+..+|..
T Consensus 265 Iv~~~~~~ 272 (343)
T 2pjd_A 265 IISNPPFH 272 (343)
T ss_dssp EEECCCCC
T ss_pred EEECCCcc
Confidence 99988864
No 233
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=92.32 E-value=0.18 Score=48.22 Aligned_cols=85 Identities=16% Similarity=0.139 Sum_probs=56.9
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+.+|||+-||.|++...+.+.. +-..++++|+++...+..+.++...+... ..+..+|+.+.- .... ..+.|
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~-~~~~f 127 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLG----EKLE-LYPLF 127 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHC-TTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSH----HHHT-TSCCE
T ss_pred CCCEEEEecCCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHH----Hhcc-cCCCc
Confidence 35689999999999999888762 11247899999999888888775443211 223456665431 1110 12579
Q ss_pred cEEEEcCCCCCc
Q 006634 582 DFVICQNSVPQI 593 (637)
Q Consensus 582 DLVIGGpPCQ~F 593 (637)
|+|+...||...
T Consensus 128 D~I~~~~~~~~~ 139 (233)
T 2gpy_A 128 DVLFIDAAKGQY 139 (233)
T ss_dssp EEEEEEGGGSCH
T ss_pred cEEEECCCHHHH
Confidence 999998888644
No 234
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=92.29 E-value=0.21 Score=39.60 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=28.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 006634 79 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA 116 (637)
Q Consensus 79 ~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a 116 (637)
..|..|+.|||+.++|.+|+....-+ ++.-.++|+.
T Consensus 11 ~~I~~L~~lGF~r~~ai~AL~~a~nn--ve~Aa~iL~e 46 (53)
T 2d9s_A 11 SEIERLMSQGYSYQDIQKALVIAHNN--IEMAKNILRE 46 (53)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTTTC--HHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcCC--HHHHHHHHHH
Confidence 45999999999999999999999876 4555555543
No 235
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=92.25 E-value=0.25 Score=49.39 Aligned_cols=78 Identities=15% Similarity=0.139 Sum_probs=52.5
Q ss_pred CCCCCcccccCCCCChHHHHHHHcC-CceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc
Q 006634 501 FPGGLTMLSVFSGIGGAEVTLHRLG-IKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL 578 (637)
Q Consensus 501 f~~~l~vLsLFSGiGGlslGL~~aG-i~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~ 578 (637)
.+.+-+||||=||.|.+.+.|.+.. .+---|++||+++......+......+... ..++.+|+.++..
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~---------- 137 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI---------- 137 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC----------
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc----------
Confidence 3457899999999999999887642 111136899999998877776554332221 2245688876642
Q ss_pred CCccEEEEcC
Q 006634 579 GSIDFVICQN 588 (637)
Q Consensus 579 g~~DLVIGGp 588 (637)
+++|+|+...
T Consensus 138 ~~~d~v~~~~ 147 (261)
T 4gek_A 138 ENASMVVLNF 147 (261)
T ss_dssp CSEEEEEEES
T ss_pred cccccceeee
Confidence 4678887654
No 236
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=92.23 E-value=0.19 Score=48.14 Aligned_cols=75 Identities=13% Similarity=0.213 Sum_probs=51.8
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
+.+.+|||+-||.|.+...+.+. |. .++++|+++......+...... ....++..|+.++.. ..+.
T Consensus 54 ~~~~~vLdiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~--------~~~~ 120 (266)
T 3ujc_A 54 NENSKVLDIGSGLGGGCMYINEKYGA---HTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKEF--------PENN 120 (266)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCCC--------CTTC
T ss_pred CCCCEEEEECCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCCC--------CCCc
Confidence 34679999999999999998886 65 4789999999888776543211 222345677766531 1246
Q ss_pred ccEEEEcCC
Q 006634 581 IDFVICQNS 589 (637)
Q Consensus 581 ~DLVIGGpP 589 (637)
||+|+....
T Consensus 121 fD~v~~~~~ 129 (266)
T 3ujc_A 121 FDLIYSRDA 129 (266)
T ss_dssp EEEEEEESC
T ss_pred EEEEeHHHH
Confidence 888886543
No 237
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=92.15 E-value=0.19 Score=48.97 Aligned_cols=72 Identities=15% Similarity=0.192 Sum_probs=52.8
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006634 501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
.+.+.+|||+-||.|.+...|.+.|.. ++++|+++...+..+.... .. +...|+.++.. ..+.
T Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~l~~a~~~~~-----~~-~~~~d~~~~~~--------~~~~ 114 (260)
T 2avn_A 52 LKNPCRVLDLGGGTGKWSLFLQERGFE---VVLVDPSKEMLEVAREKGV-----KN-VVEAKAEDLPF--------PSGA 114 (260)
T ss_dssp CCSCCEEEEETCTTCHHHHHHHTTTCE---EEEEESCHHHHHHHHHHTC-----SC-EEECCTTSCCS--------CTTC
T ss_pred cCCCCeEEEeCCCcCHHHHHHHHcCCe---EEEEeCCHHHHHHHHhhcC-----CC-EEECcHHHCCC--------CCCC
Confidence 345679999999999999999998863 7899999998887765321 12 55677776541 1247
Q ss_pred ccEEEEcCC
Q 006634 581 IDFVICQNS 589 (637)
Q Consensus 581 ~DLVIGGpP 589 (637)
||+|+...+
T Consensus 115 fD~v~~~~~ 123 (260)
T 2avn_A 115 FEAVLALGD 123 (260)
T ss_dssp EEEEEECSS
T ss_pred EEEEEEcch
Confidence 999996543
No 238
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=92.15 E-value=0.13 Score=52.29 Aligned_cols=103 Identities=10% Similarity=0.043 Sum_probs=64.3
Q ss_pred Hhhhhhhccc--chhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCc-eeeEEEeecCHHHHHHHHHHhhhcCCCC
Q 006634 479 ESLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIK-LKGVISIETSETNRRILKRWWESSGQTG 555 (637)
Q Consensus 479 k~Lgnsfqvd--tv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~-~k~vvaVEid~~a~~t~r~~~~~tn~~g 555 (637)
|.+|..|-+| .+..++..+.. ..+-+|||+=||.|.++..|.+.|-+ -..|+++|+|+.....++..+ .. .
T Consensus 18 k~~GQ~fL~d~~i~~~iv~~~~~--~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~~---~ 91 (279)
T 3uzu_A 18 KRFGQNFLVDHGVIDAIVAAIRP--ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-GE---L 91 (279)
T ss_dssp CCCSCCEECCHHHHHHHHHHHCC--CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-GG---G
T ss_pred ccCCccccCCHHHHHHHHHhcCC--CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-CC---C
Confidence 3446656444 33333433321 24678999999999999999887642 011789999999999887753 11 2
Q ss_pred CccccccccccChhhHHHhhhccCCccEEEEcCC
Q 006634 556 ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNS 589 (637)
Q Consensus 556 ~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpP 589 (637)
..++.+|+.+++-..+.. ........|+|-.|
T Consensus 92 v~~i~~D~~~~~~~~~~~--~~~~~~~~vv~NlP 123 (279)
T 3uzu_A 92 LELHAGDALTFDFGSIAR--PGDEPSLRIIGNLP 123 (279)
T ss_dssp EEEEESCGGGCCGGGGSC--SSSSCCEEEEEECC
T ss_pred cEEEECChhcCChhHhcc--cccCCceEEEEccC
Confidence 236789998887543310 00013457777776
No 239
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=92.11 E-value=0.27 Score=51.00 Aligned_cols=76 Identities=17% Similarity=0.157 Sum_probs=52.4
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+.+|||+-||.|.++..+.++|. .-|+++|+++ .....+......+... ..++.+|+.++.. ..+.|
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~g~--~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~f 134 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKAGA--RKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVEL--------PVEKV 134 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHTTC--SEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC--------SSSCE
T ss_pred CCCEEEEEeccchHHHHHHHHCCC--CEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccC--------CCCce
Confidence 357899999999999999999986 3578999996 4444444433322222 2356788877632 12579
Q ss_pred cEEEEcCC
Q 006634 582 DFVICQNS 589 (637)
Q Consensus 582 DLVIGGpP 589 (637)
|+|+.-++
T Consensus 135 D~Iis~~~ 142 (349)
T 3q7e_A 135 DIIISEWM 142 (349)
T ss_dssp EEEEECCC
T ss_pred EEEEEccc
Confidence 99997543
No 240
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=92.06 E-value=0.094 Score=41.65 Aligned_cols=31 Identities=13% Similarity=0.395 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006634 1 MGFSPSLVDKVIEEKGQDNVDLLLETLIEYN 31 (637)
Q Consensus 1 MGF~~e~V~KaI~e~Ge~~~d~iLE~Lltys 31 (637)
|||++++|.+|++..|....+.-||-|+.-+
T Consensus 19 MGFd~erae~Alk~Tg~~Gle~AmewL~k~~ 49 (54)
T 2cos_A 19 AGCDQEMAGRALKQTGSRSIEAALEYISKMS 49 (54)
T ss_dssp HHCCHHHHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred cCCCHHHHHHHHHHhCcccHHHHHHHHHHhc
Confidence 8999999999999999999999999998865
No 241
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=92.05 E-value=0.28 Score=47.96 Aligned_cols=83 Identities=12% Similarity=0.136 Sum_probs=56.3
Q ss_pred CCCcccccCCCCChHHHHHHHc---CCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL 578 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a---Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~ 578 (637)
.+.+|||+-||.|+..+.+.++ +. .++++|+++......+.++...+... ..+..+|+.+. +..+ ...
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----l~~~-~~~ 134 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADG---QLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQS----LESL-GEC 134 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHTC-CSC
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHhc-CCC
Confidence 3578999999999999998876 43 47899999999988888776543221 22345565432 1111 112
Q ss_pred CCccEEEEcCCCCCc
Q 006634 579 GSIDFVICQNSVPQI 593 (637)
Q Consensus 579 g~~DLVIGGpPCQ~F 593 (637)
+.||+|+-..++..+
T Consensus 135 ~~fD~V~~d~~~~~~ 149 (248)
T 3tfw_A 135 PAFDLIFIDADKPNN 149 (248)
T ss_dssp CCCSEEEECSCGGGH
T ss_pred CCeEEEEECCchHHH
Confidence 479999977776543
No 242
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=92.04 E-value=0.34 Score=45.85 Aligned_cols=85 Identities=11% Similarity=0.108 Sum_probs=55.2
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhcc--C
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKL--G 579 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~--g 579 (637)
.+.+|||+.||.|...+.+.++.-+-..++++|+++......+.++...+.. ...++.+|+.+. +..+.... +
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----~~~~~~~~~~~ 144 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALET----LDELLAAGEAG 144 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHHHHHTTCTT
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHH----HHHHHhcCCCC
Confidence 3568999999999999998875110125789999999998888877654321 122345565432 12221111 5
Q ss_pred CccEEEEcCCCC
Q 006634 580 SIDFVICQNSVP 591 (637)
Q Consensus 580 ~~DLVIGGpPCQ 591 (637)
.||+|+.-+|..
T Consensus 145 ~~D~v~~d~~~~ 156 (229)
T 2avd_A 145 TFDVAVVDADKE 156 (229)
T ss_dssp CEEEEEECSCST
T ss_pred CccEEEECCCHH
Confidence 799999877644
No 243
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=92.00 E-value=0.24 Score=51.18 Aligned_cols=76 Identities=14% Similarity=0.142 Sum_probs=51.7
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+.+|||+-||.|.++..+.++|. ..|++||+++.+ ...+......+. ....++.+|+.++.. .+.+
T Consensus 50 ~~~~VLDiGcGtG~ls~~la~~g~--~~V~~vD~s~~~-~~a~~~~~~~~l~~~v~~~~~d~~~~~~---------~~~~ 117 (348)
T 2y1w_A 50 KDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEASTMA-QHAEVLVKSNNLTDRIVVIPGKVEEVSL---------PEQV 117 (348)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECSTHH-HHHHHHHHHTTCTTTEEEEESCTTTCCC---------SSCE
T ss_pred CcCEEEEcCCCccHHHHHHHhCCC--CEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcchhhCCC---------CCce
Confidence 356899999999999999999886 357899999743 444444332221 122345677776532 1469
Q ss_pred cEEEEcCCC
Q 006634 582 DFVICQNSV 590 (637)
Q Consensus 582 DLVIGGpPC 590 (637)
|+|+...+.
T Consensus 118 D~Ivs~~~~ 126 (348)
T 2y1w_A 118 DIIISEPMG 126 (348)
T ss_dssp EEEEECCCB
T ss_pred eEEEEeCch
Confidence 999987663
No 244
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=91.94 E-value=0.22 Score=39.32 Aligned_cols=40 Identities=25% Similarity=0.131 Sum_probs=33.4
Q ss_pred hhHHHHHHHhcCCCHHH-HHHHHHHhCCCCcHHHHHHHHHHhh
Q 006634 77 HIEKRASLLMMNFSVNE-VDFALDKLGKDAPVYELVDFITAAQ 118 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~ee-V~~AI~~~G~da~i~~Lld~I~a~q 118 (637)
...++..|+.|||+.+. +.+|++.++-+ ++.-+|+|+...
T Consensus 9 ~~~~l~~L~~MGF~d~~~n~~AL~~~~Gd--v~~Ave~L~~~~ 49 (54)
T 2dah_A 9 FQVQLEQLRSMGFLNREANLQALIATGGD--VDAAVEKLRQSS 49 (54)
T ss_dssp SHHHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence 35688999999997765 69999999965 688899999764
No 245
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=91.90 E-value=0.21 Score=39.99 Aligned_cols=41 Identities=20% Similarity=0.095 Sum_probs=34.3
Q ss_pred chhhHHHHHHHhcCCC-HHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 006634 75 GLHIEKRASLLMMNFS-VNEVDFALDKLGKDAPVYELVDFITAA 117 (637)
Q Consensus 75 s~~~~~~~~lv~MGF~-~eeV~~AI~~~G~da~i~~Lld~I~a~ 117 (637)
.....++..|+.|||+ ++.+.+|+..++-+ ++.-+|+|+..
T Consensus 15 ~~~~~qi~~L~~MGF~d~~~~~~AL~~~~gn--ve~Ave~L~~~ 56 (58)
T 1wr1_B 15 ERYEHQLRQLNDMGFFDFDRNVAALRRSGGS--VQGALDSLLNG 56 (58)
T ss_dssp HHTHHHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHhCCC--HHHHHHHHHhC
Confidence 4556789999999996 77889999999965 58889999875
No 246
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=91.89 E-value=0.17 Score=48.40 Aligned_cols=74 Identities=16% Similarity=0.066 Sum_probs=51.7
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+.+|||+-||.|.+...|.+.|. ..++++|+++......+...... ....+...|+.++.. ..+.||
T Consensus 93 ~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~--------~~~~fD 160 (254)
T 1xtp_A 93 GTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATL--------PPNTYD 160 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCC--------CSSCEE
T ss_pred CCCEEEEECCCcCHHHHHHHHhhc--CEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHCCC--------CCCCeE
Confidence 467999999999999999888874 35789999999988887654321 122245567665431 124688
Q ss_pred EEEEcC
Q 006634 583 FVICQN 588 (637)
Q Consensus 583 LVIGGp 588 (637)
+|+...
T Consensus 161 ~v~~~~ 166 (254)
T 1xtp_A 161 LIVIQW 166 (254)
T ss_dssp EEEEES
T ss_pred EEEEcc
Confidence 888543
No 247
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=91.69 E-value=0.14 Score=48.80 Aligned_cols=83 Identities=18% Similarity=0.201 Sum_probs=55.6
Q ss_pred CCcccccCCCCChHHHHHHHc---CCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhc--
Q 006634 504 GLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK-- 577 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~a---Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~-- 577 (637)
+.+||||.||.|+.++.+.++ |. .|+++|+++......+.++...+... ..++.+|+.++- +.+...
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l----~~~~~~~~ 131 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMARLLQPGA---RLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLI----PQLKKKYD 131 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHG----GGTTTTSC
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCC---EEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHH----HHHHHhcC
Confidence 468999999999999998874 33 47899999999998888776543211 224456654321 111111
Q ss_pred cCCccEEEEcCCCCCc
Q 006634 578 LGSIDFVICQNSVPQI 593 (637)
Q Consensus 578 ~g~~DLVIGGpPCQ~F 593 (637)
.+.||+|+-..++..+
T Consensus 132 ~~~fD~V~~d~~~~~~ 147 (221)
T 3u81_A 132 VDTLDMVFLDHWKDRY 147 (221)
T ss_dssp CCCCSEEEECSCGGGH
T ss_pred CCceEEEEEcCCcccc
Confidence 1579999977766554
No 248
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=91.64 E-value=0.29 Score=45.56 Aligned_cols=75 Identities=24% Similarity=0.158 Sum_probs=50.9
Q ss_pred ccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh
Q 006634 497 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH 576 (637)
Q Consensus 497 LK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~ 576 (637)
|+.+.+.+.+|||+-||.|.+...+ |+ ..++++|+++.+.+..+... ....+...|+.++..
T Consensus 30 l~~~~~~~~~vLdiG~G~G~~~~~l---~~--~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~-------- 91 (211)
T 2gs9_A 30 LKGLLPPGESLLEVGAGTGYWLRRL---PY--PQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALPF-------- 91 (211)
T ss_dssp HHTTCCCCSEEEEETCTTCHHHHHC---CC--SEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCCS--------
T ss_pred HHHhcCCCCeEEEECCCCCHhHHhC---CC--CeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCCC--------
Confidence 3344446789999999999988776 65 24789999999887776543 122345667766531
Q ss_pred ccCCccEEEEcCC
Q 006634 577 KLGSIDFVICQNS 589 (637)
Q Consensus 577 ~~g~~DLVIGGpP 589 (637)
..+.||+|+....
T Consensus 92 ~~~~fD~v~~~~~ 104 (211)
T 2gs9_A 92 PGESFDVVLLFTT 104 (211)
T ss_dssp CSSCEEEEEEESC
T ss_pred CCCcEEEEEEcCh
Confidence 1246899986543
No 249
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=91.55 E-value=0.15 Score=44.94 Aligned_cols=80 Identities=15% Similarity=0.102 Sum_probs=51.0
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccCh-hhHHHhhhccC
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT-KKFESLIHKLG 579 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~-~~Ie~l~~~~g 579 (637)
..+.+|||+-||.|++...+.+. |-. ..++++|+++ .... ....+...|+.+... +.+.... ..+
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~-~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~-~~~ 87 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQIGGK-GRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERV-GDS 87 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTT-CEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHH-TTC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhCCC-CeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccC-CCC
Confidence 34578999999999999988876 432 2468999998 4321 122245667765431 0111111 125
Q ss_pred CccEEEEcCCCCCcC
Q 006634 580 SIDFVICQNSVPQIP 594 (637)
Q Consensus 580 ~~DLVIGGpPCQ~FS 594 (637)
.||+|+..+|+..+.
T Consensus 88 ~~D~i~~~~~~~~~~ 102 (180)
T 1ej0_A 88 KVQVVMSDMAPNMSG 102 (180)
T ss_dssp CEEEEEECCCCCCCS
T ss_pred ceeEEEECCCccccC
Confidence 799999999987654
No 250
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=91.55 E-value=0.33 Score=50.17 Aligned_cols=75 Identities=16% Similarity=0.121 Sum_probs=51.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+-+|||+-||.|.++..+.++|. ..|+++|+++ .....+......+. ....++.+|+.++.. ..+.+
T Consensus 64 ~~~~VLDiGcGtG~ls~~la~~g~--~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~~~ 132 (340)
T 2fyt_A 64 KDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHL--------PVEKV 132 (340)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC--------SCSCE
T ss_pred CCCEEEEeeccCcHHHHHHHHcCC--CEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcC--------CCCcE
Confidence 356899999999999999999985 3588999997 55555555443322 122345677776531 12479
Q ss_pred cEEEEcC
Q 006634 582 DFVICQN 588 (637)
Q Consensus 582 DLVIGGp 588 (637)
|+|+...
T Consensus 133 D~Ivs~~ 139 (340)
T 2fyt_A 133 DVIISEW 139 (340)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
Confidence 9999654
No 251
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=91.52 E-value=0.095 Score=40.16 Aligned_cols=37 Identities=24% Similarity=0.185 Sum_probs=29.7
Q ss_pred hhhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhh
Q 006634 150 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFS 188 (637)
Q Consensus 150 ~~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~A 188 (637)
.+++..|+.|||++..|..|+..||.+ ++.=++.++.
T Consensus 5 ~eaI~rL~~mGF~~~~a~~Al~a~~~n--~e~A~~~Lf~ 41 (47)
T 1dv0_A 5 KEAIERLKALGFPESLVIQAYFACEKN--ENLAANFLLS 41 (47)
T ss_dssp HHHHTTTTTTTCCHHHHHHHHTTTTSC--HHHHHHHTTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHh
Confidence 467889999999999999999999965 4444666654
No 252
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=91.51 E-value=0.38 Score=48.18 Aligned_cols=72 Identities=15% Similarity=0.226 Sum_probs=50.1
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
.+.+|||+-||.|++...+.+. |. .++++|+++......+......+.. ...+..+|+.++. +.
T Consensus 90 ~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~ 155 (318)
T 2fk8_A 90 PGMTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA-----------EP 155 (318)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC-----------CC
T ss_pred CcCEEEEEcccchHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC-----------CC
Confidence 4679999999999999888876 86 4789999999988877665432211 1224456665542 35
Q ss_pred ccEEEEcC
Q 006634 581 IDFVICQN 588 (637)
Q Consensus 581 ~DLVIGGp 588 (637)
||+|+...
T Consensus 156 fD~v~~~~ 163 (318)
T 2fk8_A 156 VDRIVSIE 163 (318)
T ss_dssp CSEEEEES
T ss_pred cCEEEEeC
Confidence 77777553
No 253
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=91.48 E-value=0.44 Score=43.97 Aligned_cols=75 Identities=15% Similarity=0.208 Sum_probs=53.6
Q ss_pred cccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCccE
Q 006634 506 TMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSIDF 583 (637)
Q Consensus 506 ~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 583 (637)
+|||+-||.|.+...+.+. |. .++++|+++......+......+.. ...+...|+.++.- ..+.+|+
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~D~ 114 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQSDF---SIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPI--------EDNYADL 114 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHSEE---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSS--------CTTCEEE
T ss_pred EEEEECCCCCHHHHHHHHcCCC---eEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCC--------CcccccE
Confidence 9999999999999999887 42 5789999999988887765543322 22345677776541 1247999
Q ss_pred EEEcCCCC
Q 006634 584 VICQNSVP 591 (637)
Q Consensus 584 VIGGpPCQ 591 (637)
|+......
T Consensus 115 v~~~~~l~ 122 (219)
T 3dlc_A 115 IVSRGSVF 122 (219)
T ss_dssp EEEESCGG
T ss_pred EEECchHh
Confidence 99765443
No 254
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=91.45 E-value=0.37 Score=40.49 Aligned_cols=42 Identities=17% Similarity=0.179 Sum_probs=34.8
Q ss_pred chhhHHHHHHHhcCCC-HHHHHHHHHHhCCCCcHHHHHHHHHHhh
Q 006634 75 GLHIEKRASLLMMNFS-VNEVDFALDKLGKDAPVYELVDFITAAQ 118 (637)
Q Consensus 75 s~~~~~~~~lv~MGF~-~eeV~~AI~~~G~da~i~~Lld~I~a~q 118 (637)
.....++..|+.|||. ++.+.+|+..++-+ ++.-+|+|+...
T Consensus 27 ~~ye~qi~qL~eMGF~dr~~~~~AL~~t~Gn--ve~Ave~L~~~~ 69 (74)
T 1vej_A 27 GRYQQELEELKALGFANRDANLQALVATDGD--IHAAIEMLLGAS 69 (74)
T ss_dssp TTSHHHHHHHHHHTCCCHHHHHHHHHHTTSC--HHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHhCCC--HHHHHHHHHhCC
Confidence 3456789999999995 78889999999865 588899999763
No 255
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=91.43 E-value=0.39 Score=47.69 Aligned_cols=85 Identities=15% Similarity=0.089 Sum_probs=54.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhc--CCCCCccccccccccChhhHHHhhhccCC
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS--GQTGELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~t--n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
.+.+|||+-||.|.+...|.+.--+...++++|+++......+...... ......++..|+.++....-.. ...+.
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~--~~~~~ 113 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADS--VDKQK 113 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTT--TTSSC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCcccccc--ccCCC
Confidence 5789999999999999998852101135789999999888777655432 1223335678887765211000 01257
Q ss_pred ccEEEEcCC
Q 006634 581 IDFVICQNS 589 (637)
Q Consensus 581 ~DLVIGGpP 589 (637)
||+|+....
T Consensus 114 fD~V~~~~~ 122 (299)
T 3g5t_A 114 IDMITAVEC 122 (299)
T ss_dssp EEEEEEESC
T ss_pred eeEEeHhhH
Confidence 999987643
No 256
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=91.33 E-value=0.17 Score=50.38 Aligned_cols=44 Identities=16% Similarity=0.196 Sum_probs=37.4
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhh
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 549 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~ 549 (637)
.+-.|||+|||.|...++..++|-+ ++++|+++.+..+.+..+.
T Consensus 212 ~~~~vlD~f~GsGtt~~~a~~~gr~---~ig~e~~~~~~~~~~~r~~ 255 (260)
T 1g60_A 212 PNDLVLDCFMGSGTTAIVAKKLGRN---FIGCDMNAEYVNQANFVLN 255 (260)
T ss_dssp TTCEEEESSCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHcCCe---EEEEeCCHHHHHHHHHHHH
Confidence 4567999999999999999999964 6789999999887776543
No 257
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=91.22 E-value=0.45 Score=46.70 Aligned_cols=72 Identities=15% Similarity=0.273 Sum_probs=49.7
Q ss_pred CCCCcccccCCCCChHHHHHH-HcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccC
Q 006634 502 PGGLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG 579 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~-~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g 579 (637)
+.+.+|||+-||.|++...+. +.|. .++++|+++......+......+.. ...+...|+.++. +
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~ 128 (287)
T 1kpg_A 63 QPGMTLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-----------E 128 (287)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-----------C
T ss_pred CCcCEEEEECCcccHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-----------C
Confidence 346799999999999998887 6675 4789999999888777655432211 2224456665442 3
Q ss_pred CccEEEEc
Q 006634 580 SIDFVICQ 587 (637)
Q Consensus 580 ~~DLVIGG 587 (637)
.||+|+..
T Consensus 129 ~fD~v~~~ 136 (287)
T 1kpg_A 129 PVDRIVSI 136 (287)
T ss_dssp CCSEEEEE
T ss_pred CeeEEEEe
Confidence 67887754
No 258
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=91.09 E-value=0.41 Score=49.11 Aligned_cols=76 Identities=18% Similarity=0.196 Sum_probs=51.6
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+.+|||+-||.|.++..+.++|. ..|++||+++ .....+......+... ..++.+|+.++.. ..+.+
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~g~--~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~~~ 106 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKHGA--KHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHL--------PFPKV 106 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCC--SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC--------SSSCE
T ss_pred CCCEEEEecCccHHHHHHHHHCCC--CEEEEEChHH-HHHHHHHHHHHcCCCCCEEEEECchhhccC--------CCCcc
Confidence 356899999999999999999986 3588999995 4455555443322211 2245677776531 12479
Q ss_pred cEEEEcCC
Q 006634 582 DFVICQNS 589 (637)
Q Consensus 582 DLVIGGpP 589 (637)
|+|+..++
T Consensus 107 D~Ivs~~~ 114 (328)
T 1g6q_1 107 DIIISEWM 114 (328)
T ss_dssp EEEEECCC
T ss_pred cEEEEeCc
Confidence 99997654
No 259
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=91.01 E-value=0.18 Score=56.09 Aligned_cols=80 Identities=18% Similarity=0.079 Sum_probs=49.1
Q ss_pred CcccccCCCCChHHHHHHHc--------CC------ceeeEEEeecCHHHHHHHHHHhhhcCCCCCc-cccccccccChh
Q 006634 505 LTMLSVFSGIGGAEVTLHRL--------GI------KLKGVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTK 569 (637)
Q Consensus 505 l~vLsLFSGiGGlslGL~~a--------Gi------~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l-~~~~DI~~Lt~~ 569 (637)
.+|+|.+||.|||-+.+.+. +. .-..++++|+++.+.++.+.+..-++....+ +..+|.-....
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~- 324 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ- 324 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS-
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc-
Confidence 39999999999998775321 10 0135789999999988877654333222211 13444321110
Q ss_pred hHHHhhhccCCccEEEEcCCCC
Q 006634 570 KFESLIHKLGSIDFVICQNSVP 591 (637)
Q Consensus 570 ~Ie~l~~~~g~~DLVIGGpPCQ 591 (637)
.....||+|++-||=.
T Consensus 325 ------~~~~~fD~Iv~NPPf~ 340 (544)
T 3khk_A 325 ------HPDLRADFVMTNPPFN 340 (544)
T ss_dssp ------CTTCCEEEEEECCCSS
T ss_pred ------cccccccEEEECCCcC
Confidence 1125799999999954
No 260
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=90.96 E-value=0.32 Score=45.27 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=35.2
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHH
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR 546 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~ 546 (637)
..+.+|||+-||.|.+...+.+.|. .++++|+++......+.
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~~~~~~~~~~~ 72 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENGT---RVSGIEAFPEAAEQAKE 72 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTTC---EEEEEESSHHHHHHHHT
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHH
Confidence 4568999999999999999998874 47899999998776653
No 261
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=90.92 E-value=0.42 Score=47.87 Aligned_cols=52 Identities=13% Similarity=0.173 Sum_probs=39.4
Q ss_pred hhccccccCCCCCcccccCCCCChHHHHHHHc--CCceeeEEEeecCHHHHHHHHHH
Q 006634 493 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRW 547 (637)
Q Consensus 493 ~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~a--Gi~~k~vvaVEid~~a~~t~r~~ 547 (637)
.++.|......+.+|||+-||.|.+.+.+.+. +. .+++|||++......+.+
T Consensus 36 ~l~~l~~~~~~~~~VLDiGCG~G~~~~~la~~~~~~---~v~gvDis~~~i~~A~~~ 89 (292)
T 3g07_A 36 RLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPS---RMVGLDIDSRLIHSARQN 89 (292)
T ss_dssp GGGTSCGGGTTTSEEEEESCTTCHHHHHHHHHTCCS---EEEEEESCHHHHHHHHHT
T ss_pred HHHhhhhhhcCCCcEEEeCCCCCHHHHHHHHHcCCC---EEEEECCCHHHHHHHHHH
Confidence 34455544345789999999999999998876 33 578999999987776654
No 262
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=90.90 E-value=0.61 Score=43.11 Aligned_cols=74 Identities=19% Similarity=0.103 Sum_probs=49.8
Q ss_pred CCCcccccCCCCChHH-HHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAE-VTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGls-lGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+.+|||+-||.|.+. ..+.+.|. .++++|+++.+.+..+......+ ....+...|+.++.. ..+.+
T Consensus 23 ~~~~vLDiGcG~G~~~~~~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~--------~~~~f 90 (209)
T 2p8j_A 23 LDKTVLDCGAGGDLPPLSIFVEDGY---KTYGIEISDLQLKKAENFSRENN-FKLNISKGDIRKLPF--------KDESM 90 (209)
T ss_dssp SCSEEEEESCCSSSCTHHHHHHTTC---EEEEEECCHHHHHHHHHHHHHHT-CCCCEEECCTTSCCS--------CTTCE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcC-CceEEEECchhhCCC--------CCCce
Confidence 4679999999998873 44566776 36899999999888776654332 223345677766531 12468
Q ss_pred cEEEEcC
Q 006634 582 DFVICQN 588 (637)
Q Consensus 582 DLVIGGp 588 (637)
|+|+...
T Consensus 91 D~v~~~~ 97 (209)
T 2p8j_A 91 SFVYSYG 97 (209)
T ss_dssp EEEEECS
T ss_pred eEEEEcC
Confidence 8888653
No 263
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=90.71 E-value=0.025 Score=55.43 Aligned_cols=77 Identities=14% Similarity=0.040 Sum_probs=51.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+-+|||+.||.|+++..+.+.|. -++++|+++......+.... ......++.+|+.++... ..+.|
T Consensus 29 ~~~~VLDiG~G~G~~~~~l~~~~~---~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~~~-------~~~~f- 95 (245)
T 1yub_A 29 ETDTVYEIGTGKGHLTTKLAKISK---QVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFP-------NKQRY- 95 (245)
T ss_dssp SSEEEEECSCCCSSCSHHHHHHSS---EEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCC-------CSSEE-
T ss_pred CCCEEEEEeCCCCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhcCcc-------cCCCc-
Confidence 467899999999999999988883 47899999987655443221 111223556787766421 01346
Q ss_pred EEEEcCCCCC
Q 006634 583 FVICQNSVPQ 592 (637)
Q Consensus 583 LVIGGpPCQ~ 592 (637)
+|++-+|...
T Consensus 96 ~vv~n~Py~~ 105 (245)
T 1yub_A 96 KIVGNIPYHL 105 (245)
T ss_dssp EEEEECCSSS
T ss_pred EEEEeCCccc
Confidence 7888888654
No 264
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=90.65 E-value=0.48 Score=45.38 Aligned_cols=72 Identities=25% Similarity=0.201 Sum_probs=49.1
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
.+.+|||+=||.|.+...|.+. |. .++++|+++......+......+.. ...+..+|+.++.. .+.
T Consensus 36 ~~~~VLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~~~ 103 (256)
T 1nkv_A 36 PGTRILDLGSGSGEMLCTWARDHGI---TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA---------NEK 103 (256)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHTCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC---------SSC
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc---------CCC
Confidence 4679999999999999888765 64 3689999999888777665433211 12245667765532 135
Q ss_pred ccEEEE
Q 006634 581 IDFVIC 586 (637)
Q Consensus 581 ~DLVIG 586 (637)
||+|+.
T Consensus 104 fD~V~~ 109 (256)
T 1nkv_A 104 CDVAAC 109 (256)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 777775
No 265
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=90.45 E-value=0.89 Score=53.23 Aligned_cols=99 Identities=15% Similarity=0.130 Sum_probs=66.0
Q ss_pred CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhhcCCCCCCCcccCcCCCCCCCCCCCccCCCCCCCCCCccccchhhHH
Q 006634 1 MGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMDEGLHIEK 80 (637)
Q Consensus 1 MGF~~e~V~KaI~e~Ge~~~d~iLE~Lltysal~~~~s~ss~s~~~~~~d~~~~~~s~~~~~~~~~~e~~~~~~s~~~~~ 80 (637)
|||++.-..||+...|..+.+.-++-|+..-. |.++++........-+.. ... .......+.
T Consensus 662 mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmd------------d~di~~p~~~~~~~~~~s---~~~---~~~~~~~e~ 723 (854)
T 3ihp_A 662 MGFPMDACRKAVYYTGNSGAEAAMNWVMSHMD------------DPDFANPLILPGSSGPGS---TSA---AADPPPEDC 723 (854)
T ss_dssp HTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTT------------SCGGGSCCCCC--------------------CCHHH
T ss_pred cCCCHHHHHHHHhhcCCCchHHHhHHHhhccC------------cccccccccccccccccc---ccc---ccCCCCHHH
Confidence 89999999999999999999999999986631 111222111100000000 000 001234567
Q ss_pred HHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhh
Q 006634 81 RASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI 119 (637)
Q Consensus 81 ~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~ 119 (637)
+..|..|||+.+.+.+|+++.+.+ ++.-+|.|++...
T Consensus 724 i~~l~~mGf~~~~a~~aL~~t~~~--~eraidwlfs~~d 760 (854)
T 3ihp_A 724 VTTIVSMGFSRDQALKALRATNNS--LERAVDWIFSHID 760 (854)
T ss_dssp HHHHHTTTCCHHHHHHHHHHTTTC--HHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHhhcCc--HHHHHHhhhcCcc
Confidence 889999999999999999999874 5888999998644
No 266
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=90.37 E-value=0.29 Score=48.51 Aligned_cols=75 Identities=16% Similarity=0.142 Sum_probs=53.2
Q ss_pred CCCCcccccCCCCChHHHHHHHc---CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL 578 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~a---Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~ 578 (637)
..+.+|||+-||.|.+...|.+. |. .++++|+++......+......+ ....+..+|+.++.. .
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~-~~v~~~~~d~~~~~~---------~ 87 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDSGETLLAEARELFRLLP-YDSEFLEGDATEIEL---------N 87 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTC---EEEEEESCHHHHHHHHHHHHSSS-SEEEEEESCTTTCCC---------S
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHhcC-CceEEEEcchhhcCc---------C
Confidence 35689999999999999998776 43 46899999998887776554321 122346678776542 1
Q ss_pred CCccEEEEcCC
Q 006634 579 GSIDFVICQNS 589 (637)
Q Consensus 579 g~~DLVIGGpP 589 (637)
+.||+|+....
T Consensus 88 ~~fD~v~~~~~ 98 (284)
T 3gu3_A 88 DKYDIAICHAF 98 (284)
T ss_dssp SCEEEEEEESC
T ss_pred CCeeEEEECCh
Confidence 46899987553
No 267
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=90.32 E-value=0.21 Score=40.53 Aligned_cols=39 Identities=26% Similarity=0.375 Sum_probs=32.2
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhhcc
Q 006634 151 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 190 (637)
Q Consensus 151 ~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~Aaq 190 (637)
+++..|+.|||++++|..|+-.||- ..++.=++.|+.-+
T Consensus 21 ~~i~~L~~MGF~~~~a~~AL~~t~~-~nve~A~ewL~~~~ 59 (64)
T 2cpw_A 21 SALDVLLSMGFPRARAQKALASTGG-RSVQTACDWLFSHS 59 (64)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTT-SCHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCC-CCHHHHHHHHHhCC
Confidence 5677999999999999999999996 24777788887644
No 268
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=90.31 E-value=0.35 Score=51.54 Aligned_cols=71 Identities=18% Similarity=0.222 Sum_probs=47.6
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCcc
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
+-+|||+=||.|-+++-..++|.. -|+|||.++.+.. .+..-...+... ..++.+|+.++.. ...+|
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aGA~--~V~ave~s~~~~~-a~~~~~~n~~~~~i~~i~~~~~~~~l---------pe~~D 151 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAGAR--RVYAVEASAIWQQ-AREVVRFNGLEDRVHVLPGPVETVEL---------PEQVD 151 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCS--EEEEEECSTTHHH-HHHHHHHTTCTTTEEEEESCTTTCCC---------SSCEE
T ss_pred CCEEEEeCCCccHHHHHHHHhCCC--EEEEEeChHHHHH-HHHHHHHcCCCceEEEEeeeeeeecC---------Ccccc
Confidence 447999999999999999999974 5899999975432 232222222212 2245678877642 24799
Q ss_pred EEEE
Q 006634 583 FVIC 586 (637)
Q Consensus 583 LVIG 586 (637)
+||.
T Consensus 152 vivs 155 (376)
T 4hc4_A 152 AIVS 155 (376)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9984
No 269
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=90.24 E-value=0.28 Score=50.25 Aligned_cols=81 Identities=16% Similarity=0.239 Sum_probs=54.6
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhc----CCCCCccccccccccChhhHHHhhhc
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK 577 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~t----n~~g~l~~~~DI~~Lt~~~Ie~l~~~ 577 (637)
+++-+||+|.||.|++...+.+.+ +...+++||+|+...+..+.++... +.....++.+|..+. +. ..
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~----l~---~~ 165 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEF----MK---QN 165 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH----HH---TC
T ss_pred CCCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHH----Hh---hC
Confidence 456799999999999999887764 2346889999999999888876531 111222445665431 11 12
Q ss_pred cCCccEEEEcCCC
Q 006634 578 LGSIDFVICQNSV 590 (637)
Q Consensus 578 ~g~~DLVIGGpPC 590 (637)
.+.||+|+..+|.
T Consensus 166 ~~~fD~Ii~d~~~ 178 (304)
T 2o07_A 166 QDAFDVIITDSSD 178 (304)
T ss_dssp SSCEEEEEEECC-
T ss_pred CCCceEEEECCCC
Confidence 3579999987664
No 270
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=90.20 E-value=0.24 Score=47.98 Aligned_cols=82 Identities=12% Similarity=0.106 Sum_probs=53.7
Q ss_pred CCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCC-C-CccccccccccChhhHHHhhhccCC
Q 006634 504 GLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-G-ELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g-~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
+.+|||+-||.|..++.|.++ +-. -.+++||+++...+..+.++...+.. . ..++.+|..++-. .+ ..+.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~----~~--~~~~ 129 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADN-TTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMS----RL--ANDS 129 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTT-SEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGG----GS--CTTC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHH----Hh--cCCC
Confidence 358999999999999988764 211 24789999999999999888764322 1 1234455443211 10 1267
Q ss_pred ccEEEEcCCCCC
Q 006634 581 IDFVICQNSVPQ 592 (637)
Q Consensus 581 ~DLVIGGpPCQ~ 592 (637)
||+|+-..+...
T Consensus 130 fD~V~~d~~~~~ 141 (221)
T 3dr5_A 130 YQLVFGQVSPMD 141 (221)
T ss_dssp EEEEEECCCTTT
T ss_pred cCeEEEcCcHHH
Confidence 999987665544
No 271
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=90.16 E-value=0.39 Score=52.44 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=51.0
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+.+|||+-||.|.+.+.+.++|. .-|+++|+++ .....+......+. ....++.+|+.++.. .+.|
T Consensus 158 ~~~~VLDiGcGtG~la~~la~~~~--~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~---------~~~f 225 (480)
T 3b3j_A 158 KDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL---------PEQV 225 (480)
T ss_dssp TTCEEEEESCSTTHHHHHHHHTTC--SEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC---------SSCE
T ss_pred CCCEEEEecCcccHHHHHHHHcCC--CEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCcc---------CCCe
Confidence 357899999999999999988875 3578999998 54555544433221 122355677766531 1479
Q ss_pred cEEEEcCC
Q 006634 582 DFVICQNS 589 (637)
Q Consensus 582 DLVIGGpP 589 (637)
|+|+..+|
T Consensus 226 D~Ivs~~~ 233 (480)
T 3b3j_A 226 DIIISEPM 233 (480)
T ss_dssp EEEECCCC
T ss_pred EEEEEeCc
Confidence 99997554
No 272
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=90.10 E-value=0.49 Score=48.20 Aligned_cols=83 Identities=24% Similarity=0.262 Sum_probs=54.2
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhc------CC-----CCCccccccccccChhh
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS------GQ-----TGELVQIEDIQALTTKK 570 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~t------n~-----~g~l~~~~DI~~Lt~~~ 570 (637)
.+.+|||+.||.|.++..+.++ |-. ..++++|+++.+....+.+.... |+ ....+..+|+.++.. .
T Consensus 105 ~g~~VLDiG~G~G~~~~~la~~~g~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~-~ 182 (336)
T 2b25_A 105 PGDTVLEAGSGSGGMSLFLSKAVGSQ-GRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE-D 182 (336)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc-c
Confidence 4679999999999999998886 532 24789999999888887765431 11 112245677766531 1
Q ss_pred HHHhhhccCCccEEEEcCCCCC
Q 006634 571 FESLIHKLGSIDFVICQNSVPQ 592 (637)
Q Consensus 571 Ie~l~~~~g~~DLVIGGpPCQ~ 592 (637)
+. .+.||+|+...|+..
T Consensus 183 ~~-----~~~fD~V~~~~~~~~ 199 (336)
T 2b25_A 183 IK-----SLTFDAVALDMLNPH 199 (336)
T ss_dssp ----------EEEEEECSSSTT
T ss_pred cC-----CCCeeEEEECCCCHH
Confidence 11 136999998766543
No 273
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=90.05 E-value=0.5 Score=45.21 Aligned_cols=74 Identities=9% Similarity=0.023 Sum_probs=52.4
Q ss_pred CCCcccccCCCCChHHHHHHHc--CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a--Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
.+.+|||+-||.|.+...+.+. |. .++++|+++......+.. .....+...|+.++.. .+.
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~---------~~~ 95 (259)
T 2p35_A 33 RVLNGYDLGCGPGNSTELLTDRYGVN---VITGIDSDDDMLEKAADR-----LPNTNFGKADLATWKP---------AQK 95 (259)
T ss_dssp CCSSEEEETCTTTHHHHHHHHHHCTT---SEEEEESCHHHHHHHHHH-----STTSEEEECCTTTCCC---------SSC
T ss_pred CCCEEEEecCcCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHh-----CCCcEEEECChhhcCc---------cCC
Confidence 4578999999999999998877 54 478999999988777653 1223355677766541 246
Q ss_pred ccEEEEcCCCCCc
Q 006634 581 IDFVICQNSVPQI 593 (637)
Q Consensus 581 ~DLVIGGpPCQ~F 593 (637)
||+|+.....+-+
T Consensus 96 fD~v~~~~~l~~~ 108 (259)
T 2p35_A 96 ADLLYANAVFQWV 108 (259)
T ss_dssp EEEEEEESCGGGS
T ss_pred cCEEEEeCchhhC
Confidence 8888876544433
No 274
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=89.87 E-value=0.67 Score=42.98 Aligned_cols=74 Identities=14% Similarity=0.113 Sum_probs=49.1
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc-CCcc
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL-GSID 582 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~-g~~D 582 (637)
+.+|||+-||.|.+...|.+.|.. ++++|+++......+.. ....+...|+.++... .... +.||
T Consensus 53 ~~~vLdiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~-----~~~~~~~fD 118 (227)
T 3e8s_A 53 PERVLDLGCGEGWLLRALADRGIE---AVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEA-----KVPVGKDYD 118 (227)
T ss_dssp CSEEEEETCTTCHHHHHHHTTTCE---EEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTT-----CSCCCCCEE
T ss_pred CCEEEEeCCCCCHHHHHHHHCCCE---EEEEcCCHHHHHHHHHh------cccccchhhHHhhccc-----ccccCCCcc
Confidence 489999999999999999999873 68999999987776642 1122344555444111 0111 3488
Q ss_pred EEEEcCCCC
Q 006634 583 FVICQNSVP 591 (637)
Q Consensus 583 LVIGGpPCQ 591 (637)
+|+......
T Consensus 119 ~v~~~~~l~ 127 (227)
T 3e8s_A 119 LICANFALL 127 (227)
T ss_dssp EEEEESCCC
T ss_pred EEEECchhh
Confidence 887765443
No 275
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=89.69 E-value=0.32 Score=49.04 Aligned_cols=81 Identities=22% Similarity=0.232 Sum_probs=54.4
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcC----CCCCccccccccccChhhHHHhhhc
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG----QTGELVQIEDIQALTTKKFESLIHK 577 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn----~~g~l~~~~DI~~Lt~~~Ie~l~~~ 577 (637)
+.+.+||+|-||.|++...+.+.. +...+++||+|+...+..+.++...+ .+...++.+|+.+. +. ..
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~----l~---~~ 148 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF----LE---NV 148 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH----HH---HC
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHH----HH---hC
Confidence 456799999999999998887763 23468899999999998888764321 11222445555432 11 11
Q ss_pred cCCccEEEEcCCC
Q 006634 578 LGSIDFVICQNSV 590 (637)
Q Consensus 578 ~g~~DLVIGGpPC 590 (637)
.+.+|+|+..++.
T Consensus 149 ~~~fD~Ii~d~~~ 161 (283)
T 2i7c_A 149 TNTYDVIIVDSSD 161 (283)
T ss_dssp CSCEEEEEEECCC
T ss_pred CCCceEEEEcCCC
Confidence 3579999986543
No 276
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=89.65 E-value=0.36 Score=39.17 Aligned_cols=31 Identities=23% Similarity=0.481 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006634 1 MGFSPSLVDKVIEEKGQDNVDLLLETLIEYN 31 (637)
Q Consensus 1 MGF~~e~V~KaI~e~Ge~~~d~iLE~Lltys 31 (637)
|||+++.+.||+...|..|.+.-+|.||...
T Consensus 19 MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~ 49 (64)
T 1whc_A 19 MGFPRGRAEKALALTGNQGIEAAMDWLMEHE 49 (64)
T ss_dssp TTCCHHHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHhcCCCHHHHHHHHHhCC
Confidence 9999999999999999889999999999874
No 277
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=89.44 E-value=0.86 Score=48.25 Aligned_cols=87 Identities=15% Similarity=0.171 Sum_probs=57.7
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCcc--ccccccccChhhHHHhhhccCC
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELV--QIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~--~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
.+.+|||++||.||=+..+-.++-. ..++|+|+++.-.+.++.+........ +. ..-.|...+...+... ..+.
T Consensus 148 pg~~VLD~CAaPGGKT~~la~~~~~-~~l~A~D~~~~R~~~l~~~l~r~~~~~-~~~~~~v~v~~~D~~~~~~~--~~~~ 223 (359)
T 4fzv_A 148 PGDIVLDLCAAPGGKTLALLQTGCC-RNLAANDLSPSRIARLQKILHSYVPEE-IRDGNQVRVTSWDGRKWGEL--EGDT 223 (359)
T ss_dssp TTEEEEESSCTTCHHHHHHHHTTCE-EEEEEECSCHHHHHHHHHHHHHHSCTT-TTTSSSEEEECCCGGGHHHH--STTC
T ss_pred CCCEEEEecCCccHHHHHHHHhcCC-CcEEEEcCCHHHHHHHHHHHHHhhhhh-hccCCceEEEeCchhhcchh--cccc
Confidence 3678999999999999998888743 458899999998888877654331110 00 0112333333333221 2357
Q ss_pred ccEEEEcCCCCCc
Q 006634 581 IDFVICQNSVPQI 593 (637)
Q Consensus 581 ~DLVIGGpPCQ~F 593 (637)
||.|+-=+||.+-
T Consensus 224 fD~VLlDaPCSg~ 236 (359)
T 4fzv_A 224 YDRVLVDVPCTTD 236 (359)
T ss_dssp EEEEEEECCCCCH
T ss_pred CCEEEECCccCCC
Confidence 9999999999874
No 278
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=89.41 E-value=0.19 Score=50.19 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=52.4
Q ss_pred ccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHh
Q 006634 495 SVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL 574 (637)
Q Consensus 495 svLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l 574 (637)
..|..+.+.+-+||||=||.|.++..|.+.|.+ |++||+++...+..+ .+++..+..+|+.++.-
T Consensus 31 ~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~~~---v~gvD~s~~ml~~a~------~~~~v~~~~~~~e~~~~------ 95 (257)
T 4hg2_A 31 RWLGEVAPARGDALDCGCGSGQASLGLAEFFER---VHAVDPGEAQIRQAL------RHPRVTYAVAPAEDTGL------ 95 (257)
T ss_dssp HHHHHHSSCSSEEEEESCTTTTTHHHHHTTCSE---EEEEESCHHHHHTCC------CCTTEEEEECCTTCCCC------
T ss_pred HHHHHhcCCCCCEEEEcCCCCHHHHHHHHhCCE---EEEEeCcHHhhhhhh------hcCCceeehhhhhhhcc------
Confidence 334444566678999999999999999999863 689999998754332 12233345667665532
Q ss_pred hhccCCccEEEEc
Q 006634 575 IHKLGSIDFVICQ 587 (637)
Q Consensus 575 ~~~~g~~DLVIGG 587 (637)
..+.||+|+.+
T Consensus 96 --~~~sfD~v~~~ 106 (257)
T 4hg2_A 96 --PPASVDVAIAA 106 (257)
T ss_dssp --CSSCEEEEEEC
T ss_pred --cCCcccEEEEe
Confidence 12579999874
No 279
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=89.39 E-value=0.55 Score=37.43 Aligned_cols=39 Identities=10% Similarity=0.082 Sum_probs=30.6
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 006634 76 LHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA 116 (637)
Q Consensus 76 ~~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a 116 (637)
..+..+..|+.|||+.+.|.+|+.....|- +.-.++|+.
T Consensus 6 p~e~~Ia~L~smGfsr~da~~AL~ia~Ndv--~~AtNiLlE 44 (56)
T 2juj_A 6 QLSSEIENLMSQGYSYQDIQKALVIAQNNI--EMAKNILRE 44 (56)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHTTTCS--HHHHHHHHH
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHhcccH--HHHHHHHHH
Confidence 345689999999999999999999988764 455555553
No 280
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=89.13 E-value=0.76 Score=43.93 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=36.6
Q ss_pred ccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHH
Q 006634 499 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILK 545 (637)
Q Consensus 499 ~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r 545 (637)
+.++.+.+|||+-||.|.+...|.+.|.+ ++++|+++......+
T Consensus 37 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~ 80 (240)
T 3dli_A 37 PYFKGCRRVLDIGCGRGEFLELCKEEGIE---SIGVDINEDMIKFCE 80 (240)
T ss_dssp GGTTTCSCEEEETCTTTHHHHHHHHHTCC---EEEECSCHHHHHHHH
T ss_pred hhhcCCCeEEEEeCCCCHHHHHHHhCCCc---EEEEECCHHHHHHHH
Confidence 34456789999999999999999998874 589999999876654
No 281
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=89.08 E-value=0.84 Score=44.79 Aligned_cols=76 Identities=20% Similarity=0.241 Sum_probs=49.7
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC----CCccccccccccChhhHHHhhhcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT----GELVQIEDIQALTTKKFESLIHKL 578 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~----g~l~~~~DI~~Lt~~~Ie~l~~~~ 578 (637)
.+.+|||+-||.|.+...|.+.|. .++++|+++......+......... ...+..+|+.++..+ + ...
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~-~~~ 128 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD----V-PAG 128 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH----S-CCT
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccc----c-ccC
Confidence 457899999999999999999987 4689999999887776533211110 111234555443211 0 123
Q ss_pred CCccEEEE
Q 006634 579 GSIDFVIC 586 (637)
Q Consensus 579 g~~DLVIG 586 (637)
+.||+|+.
T Consensus 129 ~~fD~V~~ 136 (293)
T 3thr_A 129 DGFDAVIC 136 (293)
T ss_dssp TCEEEEEE
T ss_pred CCeEEEEE
Confidence 57999995
No 282
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=89.07 E-value=0.73 Score=35.44 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=29.4
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHH
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT 115 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~ 115 (637)
-+..+..|+.|||+.+.|.+|+.....+ |+.-.+.|+
T Consensus 4 ~e~~I~~L~s~Gf~~~~~~rAL~ia~Nn--ie~A~nIL~ 40 (46)
T 2oo9_A 4 LSSEIENLMSQGYSYQDIQKALVIAQNN--IEMAKNILR 40 (46)
T ss_dssp HHHHHHHHHHTTBCHHHHHHHHHHTTTC--HHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhcc--HHHHHHHHH
Confidence 3567899999999999999999998875 455555554
No 283
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=89.03 E-value=0.46 Score=43.58 Aligned_cols=77 Identities=12% Similarity=0.090 Sum_probs=46.3
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCc-------eeeEEEeecCHHHHHHHHHHhhhcCCCCCccc-cccccccChh-hH
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRL-GIK-------LKGVISIETSETNRRILKRWWESSGQTGELVQ-IEDIQALTTK-KF 571 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~a-Gi~-------~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~-~~DI~~Lt~~-~I 571 (637)
+.+.+||||-||.|+++..+.+. |-. -..++++|+++... .....+. ..|+.+.... .+
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-----------~~~~~~~~~~d~~~~~~~~~~ 89 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-----------LEGATFLCPADVTDPRTSQRI 89 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-----------CTTCEEECSCCTTSHHHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc-----------CCCCeEEEeccCCCHHHHHHH
Confidence 34679999999999999988776 421 01478999998520 1122244 6677654321 11
Q ss_pred HHhhhccCCccEEEEcCCC
Q 006634 572 ESLIHKLGSIDFVICQNSV 590 (637)
Q Consensus 572 e~l~~~~g~~DLVIGGpPC 590 (637)
.... ..+.||+|+...++
T Consensus 90 ~~~~-~~~~fD~V~~~~~~ 107 (196)
T 2nyu_A 90 LEVL-PGRRADVILSDMAP 107 (196)
T ss_dssp HHHS-GGGCEEEEEECCCC
T ss_pred HHhc-CCCCCcEEEeCCCC
Confidence 1111 11379999976543
No 284
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=89.00 E-value=0.38 Score=37.57 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=31.8
Q ss_pred hhhHHHHHhcCC-CHHHHHHHHHhhCCCCChhhhhhhhhhcc
Q 006634 150 MEITLQLLEMGF-SENQVSLAIEKFGSKTPISELADKIFSGQ 190 (637)
Q Consensus 150 ~~k~~~L~~MGf-seeEas~Ai~r~G~da~i~eLvD~I~Aaq 190 (637)
.+++..|+.||| +++.+..|+..||-+ ++.-++.++..+
T Consensus 12 ~~~l~~L~~MGF~~~~~~~~AL~~t~gn--ve~Ave~L~~~~ 51 (53)
T 2knz_A 12 QQQLEQLNSMGFINREANLQALIATGGD--INAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTSC--HHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHHcC
Confidence 367779999999 899999999999985 666677777643
No 285
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=88.99 E-value=0.67 Score=44.55 Aligned_cols=49 Identities=10% Similarity=0.237 Sum_probs=37.9
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS 551 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~t 551 (637)
.+.+|||+-||.|.....+.+..=+-..++++|+++......+.++...
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~ 108 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKEN 108 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 3568999999999999988876210124789999999988888877543
No 286
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=88.85 E-value=0.45 Score=48.71 Aligned_cols=81 Identities=17% Similarity=0.180 Sum_probs=55.1
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcC-----CCCCccccccccccChhhHHHhhh
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQALTTKKFESLIH 576 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn-----~~g~l~~~~DI~~Lt~~~Ie~l~~ 576 (637)
+.+.+||+|-||.|++...+.+.. +...+++||+|+...+..+.++...+ .+...++.+|+.+. +..
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~----l~~--- 147 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY----LER--- 147 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH----HHH---
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHH----HHh---
Confidence 456799999999999998887752 22457899999999988888765311 12223455666542 111
Q ss_pred ccCCccEEEEcCCC
Q 006634 577 KLGSIDFVICQNSV 590 (637)
Q Consensus 577 ~~g~~DLVIGGpPC 590 (637)
..+.+|+|+..+|.
T Consensus 148 ~~~~fD~Ii~d~~~ 161 (314)
T 1uir_A 148 TEERYDVVIIDLTD 161 (314)
T ss_dssp CCCCEEEEEEECCC
T ss_pred cCCCccEEEECCCC
Confidence 23579999987654
No 287
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=88.80 E-value=0.77 Score=45.24 Aligned_cols=75 Identities=19% Similarity=0.249 Sum_probs=50.2
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccC
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG 579 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g 579 (637)
+.+.+|||+-||.|.+...|.+. |. .++++|+++......+......+.. ...+..+|+.++.- ..+
T Consensus 81 ~~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~ 149 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC--------EDN 149 (297)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS--------CTT
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCC--------CCC
Confidence 35679999999999999988876 76 3789999999877776654332211 12245667665531 113
Q ss_pred CccEEEEc
Q 006634 580 SIDFVICQ 587 (637)
Q Consensus 580 ~~DLVIGG 587 (637)
.||+|+..
T Consensus 150 ~fD~v~~~ 157 (297)
T 2o57_A 150 SYDFIWSQ 157 (297)
T ss_dssp CEEEEEEE
T ss_pred CEeEEEec
Confidence 57777754
No 288
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=88.77 E-value=0.45 Score=38.71 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006634 1 MGFSPSLVDKVIEEKGQDNVDLLLETLIEYN 31 (637)
Q Consensus 1 MGF~~e~V~KaI~e~Ge~~~d~iLE~Lltys 31 (637)
|||+++.+.||+...|-.|.+.=+|-||...
T Consensus 19 MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~ 49 (64)
T 2crn_A 19 MGFPVHTALKALAATGRKTAEEALAWLHDHC 49 (64)
T ss_dssp TSCCHHHHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred cCCCHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 9999999999999999889999999999773
No 289
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=88.73 E-value=0.37 Score=49.64 Aligned_cols=80 Identities=23% Similarity=0.242 Sum_probs=53.0
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhc----CCCCCccccccccccChhhHHHhhhc
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK 577 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~t----n~~g~l~~~~DI~~Lt~~~Ie~l~~~ 577 (637)
+.+.+||++-||.|++...+.+.. +...+++||+|+.+.+..+.++... +.+...++.+|+.+. +. ..
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~----l~---~~ 186 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF----LE---NV 186 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH----HH---HC
T ss_pred CCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHH----Hh---hc
Confidence 356799999999999998887752 1245789999999999888876431 011122345555431 11 11
Q ss_pred cCCccEEEEcCC
Q 006634 578 LGSIDFVICQNS 589 (637)
Q Consensus 578 ~g~~DLVIGGpP 589 (637)
.+.||+|+..++
T Consensus 187 ~~~fDvIi~d~~ 198 (321)
T 2pt6_A 187 TNTYDVIIVDSS 198 (321)
T ss_dssp CSCEEEEEEECC
T ss_pred CCCceEEEECCc
Confidence 357999998764
No 290
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=88.65 E-value=0.19 Score=51.92 Aligned_cols=90 Identities=17% Similarity=0.097 Sum_probs=58.0
Q ss_pred hhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChh
Q 006634 490 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTK 569 (637)
Q Consensus 490 v~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~ 569 (637)
+...|++++.+ ++-.+||||+|.|.+.+-+-+ |. .-++.||.++.+.++++.+.... ....++..|...
T Consensus 80 l~~yf~~l~~~--n~~~~LDlfaGSGaLgiEaLS-~~--d~~vfvE~~~~a~~~L~~Nl~~~--~~~~V~~~D~~~---- 148 (283)
T 2oo3_A 80 FLEYISVIKQI--NLNSTLSYYPGSPYFAINQLR-SQ--DRLYLCELHPTEYNFLLKLPHFN--KKVYVNHTDGVS---- 148 (283)
T ss_dssp GHHHHHHHHHH--SSSSSCCEEECHHHHHHHHSC-TT--SEEEEECCSHHHHHHHTTSCCTT--SCEEEECSCHHH----
T ss_pred HHHHHHHHHHh--cCCCceeEeCCcHHHHHHHcC-CC--CeEEEEeCCHHHHHHHHHHhCcC--CcEEEEeCcHHH----
Confidence 45667777773 456799999999998666656 33 46789999999999998765321 112233344321
Q ss_pred hHHHhhhccCCccEEEEcCCC
Q 006634 570 KFESLIHKLGSIDFVICQNSV 590 (637)
Q Consensus 570 ~Ie~l~~~~g~~DLVIGGpPC 590 (637)
-+..+......+|||.-=||=
T Consensus 149 ~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 149 KLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp HHHHHCSCTTSCEEEEECCCC
T ss_pred HHHHhcCCCCCccEEEECCCC
Confidence 122222222359999999984
No 291
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.56 E-value=0.36 Score=41.26 Aligned_cols=39 Identities=23% Similarity=0.289 Sum_probs=33.5
Q ss_pred hhhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhhcc
Q 006634 150 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 190 (637)
Q Consensus 150 ~~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~Aaq 190 (637)
.+++..|+.|||++++|..|+-.|+. .++.=+++|+..+
T Consensus 30 e~~i~~L~~MGF~~~~a~~AL~~t~~--nve~A~ewL~~~~ 68 (83)
T 2dai_A 30 EAALRQLTEMGFPENRATKALQLNHM--SVPQAMEWLIEHA 68 (83)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTS--CHHHHHHHHHHGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC--CHHHHHHHHHHCC
Confidence 35677999999999999999999964 5888889998866
No 292
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=88.54 E-value=1.2 Score=43.06 Aligned_cols=80 Identities=23% Similarity=0.211 Sum_probs=54.2
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
.+.+|||+-||.|++...+.+. |. .++++|+++......+......+.. ...+..+|+.++.. ..+.
T Consensus 61 ~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~ 129 (273)
T 3bus_A 61 SGDRVLDVGCGIGKPAVRLATARDV---RVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPF--------EDAS 129 (273)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHSCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS--------CTTC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCC--------CCCC
Confidence 4679999999999999888764 54 4789999999888777665433221 12345677766531 1246
Q ss_pred ccEEEEcCCCCCc
Q 006634 581 IDFVICQNSVPQI 593 (637)
Q Consensus 581 ~DLVIGGpPCQ~F 593 (637)
||+|+....-.-+
T Consensus 130 fD~v~~~~~l~~~ 142 (273)
T 3bus_A 130 FDAVWALESLHHM 142 (273)
T ss_dssp EEEEEEESCTTTS
T ss_pred ccEEEEechhhhC
Confidence 8999876544433
No 293
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=88.40 E-value=0.61 Score=46.60 Aligned_cols=82 Identities=12% Similarity=0.008 Sum_probs=55.6
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+-+|||+=||.|.++. +.+.+ + ..|+++|+|+.....++...... ....++.+|+.+++-..+. ...+..+
T Consensus 21 ~~~~VLEIG~G~G~lt~-l~~~~-~-~~v~avEid~~~~~~a~~~~~~~--~~v~~i~~D~~~~~~~~~~---~~~~~~~ 92 (252)
T 1qyr_A 21 KGQAMVEIGPGLAALTE-PVGER-L-DQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFNFGELA---EKMGQPL 92 (252)
T ss_dssp TTCCEEEECCTTTTTHH-HHHTT-C-SCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCCHHHHH---HHHTSCE
T ss_pred CcCEEEEECCCCcHHHH-hhhCC-C-CeEEEEECCHHHHHHHHHHhccC--CceEEEECchhhCCHHHhh---cccCCce
Confidence 45789999999999999 87632 1 12789999999988887543211 1233578999887644321 0013468
Q ss_pred EEEEcCCCCC
Q 006634 583 FVICQNSVPQ 592 (637)
Q Consensus 583 LVIGGpPCQ~ 592 (637)
+|+|.+|=+-
T Consensus 93 ~vvsNlPY~i 102 (252)
T 1qyr_A 93 RVFGNLPYNI 102 (252)
T ss_dssp EEEEECCTTT
T ss_pred EEEECCCCCc
Confidence 9999998543
No 294
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=88.36 E-value=0.58 Score=45.44 Aligned_cols=71 Identities=13% Similarity=0.103 Sum_probs=48.8
Q ss_pred CCCCcccccCCCCChHHHHHHHc--CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 579 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~a--Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g 579 (637)
+.+.+|||+-||.|.+...+.+. |. .++++|+++...+..+... ....+...|+.++.. ..+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~--------~~~ 147 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPF--------SDT 147 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSB--------CTT
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCC---eEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhCCC--------CCC
Confidence 35678999999999999988886 54 4789999999887766532 122345667665431 114
Q ss_pred CccEEEEcC
Q 006634 580 SIDFVICQN 588 (637)
Q Consensus 580 ~~DLVIGGp 588 (637)
.||+|+...
T Consensus 148 ~fD~v~~~~ 156 (269)
T 1p91_A 148 SMDAIIRIY 156 (269)
T ss_dssp CEEEEEEES
T ss_pred ceeEEEEeC
Confidence 678877543
No 295
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=88.31 E-value=0.54 Score=41.97 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=34.0
Q ss_pred hhHHHHHHHhc-CCCHHHHHHHHHHhCCCCcHHHHHHHHHHhh
Q 006634 77 HIEKRASLLMM-NFSVNEVDFALDKLGKDAPVYELVDFITAAQ 118 (637)
Q Consensus 77 ~~~~~~~lv~M-GF~~eeV~~AI~~~G~da~i~~Lld~I~a~q 118 (637)
..+++..|+.| ||++++|..|+.+|+-| ++.-+++|+...
T Consensus 39 ~eekVk~L~EmtG~seeeAr~AL~~~ngD--l~~AI~~Lleg~ 79 (104)
T 1wj7_A 39 FEEKVKQLIDITGKNQDECVIALHDCNGD--VNRAINVLLEGN 79 (104)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHTCS
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence 45788999999 99999999999999987 467788888653
No 296
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=88.30 E-value=0.77 Score=37.07 Aligned_cols=40 Identities=15% Similarity=0.112 Sum_probs=32.0
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHh---CCCCcHHHHHHHHH
Q 006634 76 LHIEKRASLLMMNFSVNEVDFALDKL---GKDAPVYELVDFIT 115 (637)
Q Consensus 76 ~~~~~~~~lv~MGF~~eeV~~AI~~~---G~da~i~~Lld~I~ 115 (637)
..++.++.|+.+||++.|+.+|++++ +++.++++++-.-+
T Consensus 16 ~~~ea~~AL~aLGY~~~ea~kav~~v~~~~~~~~~e~lIr~AL 58 (62)
T 1ixs_A 16 AAEEAVMALAALGFKEAQARAVVLDLLAQNPKARAQDLIKEAL 58 (62)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 34678999999999999999999998 44566777765544
No 297
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=88.28 E-value=0.81 Score=44.45 Aligned_cols=83 Identities=14% Similarity=0.076 Sum_probs=55.9
Q ss_pred CCCcccccCCCCChHHHHHHHc---CCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhc-
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK- 577 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a---Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~- 577 (637)
.+-+||++-||.|+..+.+.++ +. .++++|+++......+.+|...+... ..++.+|..++ ++.+...
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~----l~~l~~~~ 142 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDG---KITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLA----LDNLLQGQ 142 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH----HHHHHHST
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHHHHhcc
Confidence 3468999999999999988775 43 47899999999999998887543211 12344555432 1222111
Q ss_pred --cCCccEEEEcCCCCC
Q 006634 578 --LGSIDFVICQNSVPQ 592 (637)
Q Consensus 578 --~g~~DLVIGGpPCQ~ 592 (637)
.+.||+|+-..+|..
T Consensus 143 ~~~~~fD~I~~d~~~~~ 159 (237)
T 3c3y_A 143 ESEGSYDFGFVDADKPN 159 (237)
T ss_dssp TCTTCEEEEEECSCGGG
T ss_pred CCCCCcCEEEECCchHH
Confidence 357999998776654
No 298
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=88.25 E-value=0.52 Score=45.85 Aligned_cols=38 Identities=26% Similarity=0.254 Sum_probs=33.4
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA 116 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a 116 (637)
.++++..|+.|||+++.|..|+.+++-| ++.-++.|+.
T Consensus 163 ~eekV~~l~~MGf~~~~a~~AL~~~~wd--~~~A~e~L~~ 200 (201)
T 3k9o_A 163 YTKKIENLCAMGFDRNAVIVALSSKSWD--VETATELLLS 200 (201)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHTTTC--HHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHhc
Confidence 4789999999999999999999999875 5788888875
No 299
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=88.22 E-value=0.77 Score=43.06 Aligned_cols=78 Identities=18% Similarity=0.177 Sum_probs=51.8
Q ss_pred CCcccccCCCCChHHHHHHHc---CCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccC
Q 006634 504 GLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLG 579 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~a---Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g 579 (637)
+.+|||+.||.|..+..+.++ |. .++++|+++...+..+.++...+... ..++.+|..++ +. ...+
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~---~~~~ 126 (210)
T 3c3p_A 57 PQLVVVPGDGLGCASWWFARAISISS---RVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGI----AA---GQRD 126 (210)
T ss_dssp CSEEEEESCGGGHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHH----HT---TCCS
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHH----hc---cCCC
Confidence 468999999999999998876 43 47899999999988888776442111 11334444321 11 1124
Q ss_pred CccEEEEcCCCCC
Q 006634 580 SIDFVICQNSVPQ 592 (637)
Q Consensus 580 ~~DLVIGGpPCQ~ 592 (637)
||+|+...++..
T Consensus 127 -fD~v~~~~~~~~ 138 (210)
T 3c3p_A 127 -IDILFMDCDVFN 138 (210)
T ss_dssp -EEEEEEETTTSC
T ss_pred -CCEEEEcCChhh
Confidence 999987766544
No 300
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=88.12 E-value=0.39 Score=48.90 Aligned_cols=82 Identities=18% Similarity=0.185 Sum_probs=53.5
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhh---c-CCCCCccccccccccChhhHHHhhhc
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES---S-GQTGELVQIEDIQALTTKKFESLIHK 577 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~---t-n~~g~l~~~~DI~~Lt~~~Ie~l~~~ 577 (637)
+.+.+||+|-||.|++...+.+.. ....+++||+|+...+..+.++.. . ......++.+|+.++... ..
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~------~~ 166 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQ------TP 166 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHS------SC
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHh------cc
Confidence 456799999999999999888763 234678999999998888876631 1 111222445665432110 01
Q ss_pred cCCccEEEEcCCC
Q 006634 578 LGSIDFVICQNSV 590 (637)
Q Consensus 578 ~g~~DLVIGGpPC 590 (637)
.+.||+|+..+|.
T Consensus 167 ~~~fDvIi~d~~~ 179 (304)
T 3bwc_A 167 DNTYDVVIIDTTD 179 (304)
T ss_dssp TTCEEEEEEECC-
T ss_pred CCceeEEEECCCC
Confidence 3579999986543
No 301
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=88.12 E-value=1.2 Score=45.24 Aligned_cols=47 Identities=9% Similarity=0.013 Sum_probs=37.0
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhh
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 550 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~ 550 (637)
|.+.+||||=||.|+....+.+.|. ..|+++|+++.+.+.-+..+..
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~~~--~~v~GiD~S~~~l~~A~~~~~~ 93 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYGEI--ALLVATDPDADAIARGNERYNK 93 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEecCCcHhHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHh
Confidence 5578999999999997666666664 2478999999999888776543
No 302
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=87.92 E-value=0.5 Score=48.73 Aligned_cols=80 Identities=16% Similarity=0.168 Sum_probs=53.7
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcC----CCCCccccccccccChhhHHHhhhc
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG----QTGELVQIEDIQALTTKKFESLIHK 577 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn----~~g~l~~~~DI~~Lt~~~Ie~l~~~ 577 (637)
+.+.+||+|-||.|++...+.+.. +...+++||+|+...+..+.++...+ .....++.+|+.+. +. ..
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~----l~---~~ 178 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEF----LK---NH 178 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHH----HH---HC
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHH----HH---hc
Confidence 355789999999999998887752 23468899999999999888775321 11122345555431 11 12
Q ss_pred cCCccEEEEcCC
Q 006634 578 LGSIDFVICQNS 589 (637)
Q Consensus 578 ~g~~DLVIGGpP 589 (637)
.+.||+|+..+|
T Consensus 179 ~~~fD~Ii~d~~ 190 (314)
T 2b2c_A 179 KNEFDVIITDSS 190 (314)
T ss_dssp TTCEEEEEECCC
T ss_pred CCCceEEEEcCC
Confidence 357999997664
No 303
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=87.54 E-value=1.3 Score=46.47 Aligned_cols=86 Identities=13% Similarity=0.066 Sum_probs=44.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhCC--CCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCC-CCCccccc----chhh
Q 006634 79 EKRASLLMMNFSVNEVDFALDKLGK--DAPVYELVDFITAAQISENFEKETDDAPHDNDGTNE-DKSDETLY----GTME 151 (637)
Q Consensus 79 ~~~~~lv~MGF~~eeV~~AI~~~G~--da~i~~Lld~I~a~q~~~~~~~e~~d~~~d~d~~~~-e~~~e~~~----~~~~ 151 (637)
.++++|...||+++.|.++|.++-. ..+++.|...|-..+..+-.. ++-..= -.-+.-+. ..+.
T Consensus 80 ~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~L~~~l~fL~~lGl~~---------~~i~~ll~~~P~lL~~s~e~i~~ 150 (335)
T 4fp9_B 80 DIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGE---------GKLKRVLYCCPEIFTMRQQDIND 150 (335)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHTTCTT---------TTHHHHHHHCGGGGTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhChhhccCCHHHHHHHHHHHHHcCCCH---------HHHHHHHHhCchhhccChHHHHH
Confidence 4677788888888888888888743 122333333333222222110 000000 00001010 1124
Q ss_pred hHHHHH-hcCCCHHHHHHHHHhh
Q 006634 152 ITLQLL-EMGFSENQVSLAIEKF 173 (637)
Q Consensus 152 k~~~L~-~MGfseeEas~Ai~r~ 173 (637)
++..|. .|||+.+|+..+|-+|
T Consensus 151 ~v~~L~~~lGfS~~ev~~mv~r~ 173 (335)
T 4fp9_B 151 TVRLLKEKCLFTVQQVTKILHSC 173 (335)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHhC
Confidence 445665 8999999999887775
No 304
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=87.54 E-value=0.97 Score=44.27 Aligned_cols=71 Identities=14% Similarity=0.187 Sum_probs=51.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 582 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 582 (637)
.+.+|||+=||.|.+...+.+.|. .++++|+++......+..+ ....+...|+.++.. .+.||
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~---------~~~fD 119 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQSGA---EVLGTDNAATMIEKARQNY-----PHLHFDVADARNFRV---------DKPLD 119 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTCCC---------SSCEE
T ss_pred CCCEEEEecCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHhhC-----CCCEEEECChhhCCc---------CCCcC
Confidence 457899999999999999988775 4789999999887776543 122355677766542 14688
Q ss_pred EEEEcCCC
Q 006634 583 FVICQNSV 590 (637)
Q Consensus 583 LVIGGpPC 590 (637)
+|+....-
T Consensus 120 ~v~~~~~l 127 (279)
T 3ccf_A 120 AVFSNAML 127 (279)
T ss_dssp EEEEESCG
T ss_pred EEEEcchh
Confidence 88875543
No 305
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=87.46 E-value=1.2 Score=39.79 Aligned_cols=43 Identities=12% Similarity=-0.035 Sum_probs=36.4
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHH
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW 547 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~ 547 (637)
..+.+|||+-||.|.+...+.+.+. .++++|+++......+..
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~ 58 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFAT---KLYCIDINVIALKEVKEK 58 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTEE---EEEEECSCHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcC---eEEEEeCCHHHHHHHHHh
Confidence 3467899999999999999999873 578999999988877654
No 306
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=87.42 E-value=1.5 Score=51.43 Aligned_cols=104 Identities=16% Similarity=0.192 Sum_probs=68.1
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCccc--ccchhhhHH
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDET--LYGTMEITL 154 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~~~~~~~e~~d~~~d~d~~~~e~~~e~--~~~~~~k~~ 154 (637)
..+.++.|+.||||+.-..+|+..-|..+. +.-++.|+++..-...+. .+....... ...... -....+.+.
T Consensus 652 d~~~l~~L~~mGf~~~~~~kal~~t~n~~~-e~a~~wl~~hmdd~di~~----p~~~~~~~~-~~s~~~~~~~~~~e~i~ 725 (854)
T 3ihp_A 652 DESVIIQLVEMGFPMDACRKAVYYTGNSGA-EAAMNWVMSHMDDPDFAN----PLILPGSSG-PGSTSAAADPPPEDCVT 725 (854)
T ss_dssp -CHHHHHHHHHTCCHHHHHHHHHHTTSCCH-HHHHHHHHHHTTSCGGGS----CCCCC---------------CCHHHHH
T ss_pred CHHHHHHHHhcCCCHHHHHHHHhhcCCCch-HHHhHHHhhccCcccccc----ccccccccc-ccccccccCCCCHHHHH
Confidence 456788999999999999999999999875 888899987743221110 000000000 000000 001235677
Q ss_pred HHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhh
Q 006634 155 QLLEMGFSENQVSLAIEKFGSKTPISELADKIFS 188 (637)
Q Consensus 155 ~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~A 188 (637)
.|..|||+.++|..|+...+. .++.-+|.|+.
T Consensus 726 ~l~~mGf~~~~a~~aL~~t~~--~~eraidwlfs 757 (854)
T 3ihp_A 726 TIVSMGFSRDQALKALRATNN--SLERAVDWIFS 757 (854)
T ss_dssp HHHTTTCCHHHHHHHHHHTTT--CHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHhhcC--cHHHHHHhhhc
Confidence 899999999999999999976 57777777776
No 307
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=87.09 E-value=1.1 Score=41.15 Aligned_cols=55 Identities=9% Similarity=-0.055 Sum_probs=36.7
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccC
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALT 567 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt 567 (637)
+.+.+||||-||.|+++..+.+. +-.-..++++|+++.+. ..+..++.+|+.+..
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~-----------~~~v~~~~~d~~~~~ 76 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDP-----------IPNVYFIQGEIGKDN 76 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCC-----------CTTCEEEECCTTTTS
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCC-----------CCCceEEEccccchh
Confidence 35678999999999999988764 20012478999998421 122334567776654
No 308
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=87.02 E-value=0.56 Score=46.12 Aligned_cols=84 Identities=10% Similarity=0.095 Sum_probs=56.1
Q ss_pred CCCcccccCCCCChHHHHHHHc---CCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhc-
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK- 577 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a---Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~- 577 (637)
.+-+|||+-||.|...+.|.++ |. .++++|+++......+.++...+... ..++.+|..++ +..+...
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~----l~~l~~~~ 151 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDG---KILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPV----LDEMIKDE 151 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTC---EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHH----HHHHHHSG
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHH----HHHHHhcc
Confidence 3468999999999999988775 43 47899999999999888886543211 11344555432 1212111
Q ss_pred --cCCccEEEEcCCCCCc
Q 006634 578 --LGSIDFVICQNSVPQI 593 (637)
Q Consensus 578 --~g~~DLVIGGpPCQ~F 593 (637)
.+.||+|+-..++..+
T Consensus 152 ~~~~~fD~V~~d~~~~~~ 169 (247)
T 1sui_A 152 KNHGSYDFIFVDADKDNY 169 (247)
T ss_dssp GGTTCBSEEEECSCSTTH
T ss_pred CCCCCEEEEEEcCchHHH
Confidence 3579999987776543
No 309
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=86.64 E-value=0.74 Score=38.05 Aligned_cols=43 Identities=16% Similarity=-0.006 Sum_probs=35.1
Q ss_pred chhhHHHHHHHhcCCCHHHH-HHHHHHhCCCCcHHHHHHHHHHhhh
Q 006634 75 GLHIEKRASLLMMNFSVNEV-DFALDKLGKDAPVYELVDFITAAQI 119 (637)
Q Consensus 75 s~~~~~~~~lv~MGF~~eeV-~~AI~~~G~da~i~~Lld~I~a~q~ 119 (637)
......+..|..|||..... .+|+..++-+ ++.-+|+|+..+.
T Consensus 17 ~~y~~ql~qL~~MGF~d~~an~~AL~at~Gn--ve~Ave~L~~~~~ 60 (67)
T 2dna_A 17 VRFSKEMECLQAMGFVNYNANLQALIATDGD--TNAAIYKLKSSQG 60 (67)
T ss_dssp HHTHHHHHHHHHHTCCCHHHHHHHHHHTTSC--HHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHcCCC--HHHHHHHHHhCCC
Confidence 34567899999999976655 9999999954 6899999998754
No 310
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=86.34 E-value=0.54 Score=45.02 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=37.9
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhh
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 549 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~ 549 (637)
.+.+|||+-||.|.+...+.+.|. ..++++|+++.+....+.+..
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~ 100 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLK 100 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHh
Confidence 457899999999999988888886 457899999999888877654
No 311
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=86.31 E-value=0.56 Score=40.29 Aligned_cols=39 Identities=15% Similarity=0.308 Sum_probs=32.4
Q ss_pred hhhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhhcc
Q 006634 150 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ 190 (637)
Q Consensus 150 ~~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~Aaq 190 (637)
.+++..|+.|||++++|..|+..++-+ ++.-+++++.-.
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~~n~n--~e~A~ewL~~h~ 60 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKSNNMN--LDQAMSALLEKK 60 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTSC--HHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHHCc
Confidence 467779999999999999999777765 777788888765
No 312
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=86.09 E-value=0.71 Score=35.92 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=28.8
Q ss_pred hhHHHHHhcCC-CHHHHHHHHHhhCCCCChhhhhhhhhh
Q 006634 151 EITLQLLEMGF-SENQVSLAIEKFGSKTPISELADKIFS 188 (637)
Q Consensus 151 ~k~~~L~~MGf-seeEas~Ai~r~G~da~i~eLvD~I~A 188 (637)
+++..|+.||| +++.+..|+..+|-+ ++.-++.++.
T Consensus 14 ~~l~~L~~MGF~~~~~~~~AL~~t~gn--~e~A~e~L~~ 50 (52)
T 2jy5_A 14 QQLEQLSAMGFLNREANLQALIATGGD--INAAIERLLG 50 (52)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHTTC--HHHHHHHHTT
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHh
Confidence 57779999999 888889999999875 5555666553
No 313
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=86.09 E-value=1.4 Score=42.40 Aligned_cols=84 Identities=13% Similarity=0.167 Sum_probs=53.1
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc--CC
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL--GS 580 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~--g~ 580 (637)
+-+|||+-||.|...+.+.++--+--.++++|+++...+..+.++...+... ..+..+|+.+. +..+.... +.
T Consensus 73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----l~~l~~~~~~~~ 148 (232)
T 3cbg_A 73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALAT----LEQLTQGKPLPE 148 (232)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH----HHHHHTSSSCCC
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHHHHhcCCCCC
Confidence 4689999999999999888751101247899999999988888876543211 11334554321 22221111 67
Q ss_pred ccEEEEcCCCC
Q 006634 581 IDFVICQNSVP 591 (637)
Q Consensus 581 ~DLVIGGpPCQ 591 (637)
||+|+-..++.
T Consensus 149 fD~V~~d~~~~ 159 (232)
T 3cbg_A 149 FDLIFIDADKR 159 (232)
T ss_dssp EEEEEECSCGG
T ss_pred cCEEEECCCHH
Confidence 99999766543
No 314
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=85.82 E-value=1.5 Score=47.90 Aligned_cols=80 Identities=10% Similarity=0.128 Sum_probs=52.9
Q ss_pred CCCcccccCCCCChHHHHHH-HcCCceeeEEEeecCHHHHHHHHHHh-------hhcC--CCCCccccccccccChhhHH
Q 006634 503 GGLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWW-------ESSG--QTGELVQIEDIQALTTKKFE 572 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~-~aGi~~k~vvaVEid~~a~~t~r~~~-------~~tn--~~g~l~~~~DI~~Lt~~~Ie 572 (637)
.+-+||||=||.|.+.+.+. ..|. .-+++||+++.+..+-+... ...+ .....++.+|+.++.-..
T Consensus 173 ~gd~VLDLGCGtG~l~l~lA~~~g~--~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d-- 248 (438)
T 3uwp_A 173 DDDLFVDLGSGVGQVVLQVAAATNC--KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRE-- 248 (438)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHCCC--SEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHH--
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCcccc--
Confidence 46789999999999998776 4565 34789999987766554421 1111 112335678988764211
Q ss_pred HhhhccCCccEEEEcCCC
Q 006634 573 SLIHKLGSIDFVICQNSV 590 (637)
Q Consensus 573 ~l~~~~g~~DLVIGGpPC 590 (637)
.++.+|+|+..++|
T Consensus 249 ----~~~~aDVVf~Nn~~ 262 (438)
T 3uwp_A 249 ----RIANTSVIFVNNFA 262 (438)
T ss_dssp ----HHHTCSEEEECCTT
T ss_pred ----ccCCccEEEEcccc
Confidence 12468999987776
No 315
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=85.73 E-value=0.69 Score=45.59 Aligned_cols=49 Identities=8% Similarity=-0.048 Sum_probs=40.8
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhc
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS 551 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~t 551 (637)
+..-+||||=||.|.+++.+....=.. .++++|||+.+..+.+++....
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~ 96 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKL 96 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHS
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhc
Confidence 456799999999999999998774333 6899999999999999887543
No 316
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=85.55 E-value=0.54 Score=48.93 Aligned_cols=81 Identities=21% Similarity=0.235 Sum_probs=53.4
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhc----CCCCCccccccccccChhhHHHhhhc
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK 577 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~t----n~~g~l~~~~DI~~Lt~~~Ie~l~~~ 577 (637)
+.+.+||+|-||.|++...+.+.. +...|++||+++...+..+.++... +.....++.+|+.+. +..+ .
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~----l~~~--~ 191 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAF----LKNA--A 191 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHH----HHTS--C
T ss_pred CCCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHH----HHhc--c
Confidence 355789999999999999888762 2245789999999999888876431 111222455665432 1110 1
Q ss_pred cCCccEEEEcCC
Q 006634 578 LGSIDFVICQNS 589 (637)
Q Consensus 578 ~g~~DLVIGGpP 589 (637)
.+.||+|+.-++
T Consensus 192 ~~~fDlIi~d~~ 203 (334)
T 1xj5_A 192 EGSYDAVIVDSS 203 (334)
T ss_dssp TTCEEEEEECCC
T ss_pred CCCccEEEECCC
Confidence 257999997543
No 317
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=85.47 E-value=0.5 Score=47.37 Aligned_cols=73 Identities=8% Similarity=-0.030 Sum_probs=48.6
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhc----CCCCCccccccccccChhhHHHhhhc
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK 577 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~t----n~~g~l~~~~DI~~Lt~~~Ie~l~~~ 577 (637)
+++-+||++-||.|++...+.+.| ..+++||+|+...+..+.++... ..+...++.+|..+.-
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~~---~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---------- 137 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKYD---THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---------- 137 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTSS---CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----------
T ss_pred CCCCEEEEEeCCcCHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----------
Confidence 355789999999999988777765 46789999999877766554320 0111223445554321
Q ss_pred cCCccEEEEcC
Q 006634 578 LGSIDFVICQN 588 (637)
Q Consensus 578 ~g~~DLVIGGp 588 (637)
+.+|+|+...
T Consensus 138 -~~fD~Ii~d~ 147 (262)
T 2cmg_A 138 -KKYDLIFCLQ 147 (262)
T ss_dssp -CCEEEEEESS
T ss_pred -hhCCEEEECC
Confidence 4689998764
No 318
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=85.46 E-value=0.56 Score=44.06 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=31.9
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHH
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRI 543 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t 543 (637)
.+.+|||+-||.|.+...|.+.+- -..++++|+++.....
T Consensus 27 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~ 66 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVARQNP-SRLVVALDADKSRMEK 66 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHHHHCT-TEEEEEEESCGGGGHH
T ss_pred CCCEEEEecCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHH
Confidence 467899999999999999988731 1357899999985553
No 319
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=85.32 E-value=0.59 Score=48.75 Aligned_cols=76 Identities=14% Similarity=0.219 Sum_probs=51.8
Q ss_pred CCcccccCCCCChHHHHHHHc--CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634 504 GLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~a--Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.++||+|=||.|++...+.+. +. -+.+||||+...+..+.|+.........++++|..++- ..+ ..+.|
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~---~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l----~~~--~~~~f 160 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQS---RNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVA----ESF--TPASR 160 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTC---EEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHH----HTC--CTTCE
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCc---EEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHH----hhc--cCCCC
Confidence 469999999999999888873 54 35789999999999888875321122234566665421 110 12579
Q ss_pred cEEEEcC
Q 006634 582 DFVICQN 588 (637)
Q Consensus 582 DLVIGGp 588 (637)
|+||...
T Consensus 161 DvIi~D~ 167 (317)
T 3gjy_A 161 DVIIRDV 167 (317)
T ss_dssp EEEEECC
T ss_pred CEEEECC
Confidence 9999754
No 320
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=84.98 E-value=0.8 Score=54.01 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=36.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHH
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW 547 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~ 547 (637)
.+.+||||-||.|.+...|.+.|-+..-|++||+++.+.+..+..
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReR 765 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKM 765 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHH
Confidence 467999999999999999999872223578999999988877653
No 321
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=84.77 E-value=0.34 Score=47.55 Aligned_cols=85 Identities=13% Similarity=0.144 Sum_probs=53.8
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhc--cCC
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK--LGS 580 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~--~g~ 580 (637)
+-+|||+-||.|+.++.|.++-=+--.|++||+++......+.++...+... ..++.+|..++- ..+... .+.
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l----~~~~~~~~~~~ 136 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTL----HSLLNEGGEHQ 136 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHH----HHHHHHHCSSC
T ss_pred cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH----HHHhhccCCCC
Confidence 4689999999999999988741001247899999987777777665543221 224456654432 111111 368
Q ss_pred ccEEEEcCCCCC
Q 006634 581 IDFVICQNSVPQ 592 (637)
Q Consensus 581 ~DLVIGGpPCQ~ 592 (637)
||+|+-..++..
T Consensus 137 fD~V~~d~~~~~ 148 (242)
T 3r3h_A 137 FDFIFIDADKTN 148 (242)
T ss_dssp EEEEEEESCGGG
T ss_pred EeEEEEcCChHH
Confidence 999987766543
No 322
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=84.24 E-value=1.9 Score=44.72 Aligned_cols=72 Identities=17% Similarity=0.105 Sum_probs=49.2
Q ss_pred CCCCcccccCCCCChHHH-HHHH-cCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 006634 502 PGGLTMLSVFSGIGGAEV-TLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 579 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlsl-GL~~-aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g 579 (637)
+.+-+|||+=||.||++. -+.+ .|. .|+++|+++.....-+.+....+.....++.+|..++. .+
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga---~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~----------d~ 187 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLSHVYGM---RVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID----------GL 187 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHHHHTTCC---EEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG----------GC
T ss_pred CCcCEEEEECCCccHHHHHHHHHccCC---EEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC----------CC
Confidence 457899999999998763 3333 465 37899999999888777665433222234567776542 24
Q ss_pred CccEEEE
Q 006634 580 SIDFVIC 586 (637)
Q Consensus 580 ~~DLVIG 586 (637)
.||+|+-
T Consensus 188 ~FDvV~~ 194 (298)
T 3fpf_A 188 EFDVLMV 194 (298)
T ss_dssp CCSEEEE
T ss_pred CcCEEEE
Confidence 7999973
No 323
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.15 E-value=0.85 Score=38.03 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006634 1 MGFSPSLVDKVIEEKGQDNVDLLLETLIEYN 31 (637)
Q Consensus 1 MGF~~e~V~KaI~e~Ge~~~d~iLE~Lltys 31 (637)
|||+++.+.||+...|-.|.+.=+|.||...
T Consensus 19 MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~ 49 (74)
T 2dag_A 19 MGFPMDACRKAVYYTGNSGAEAAMNWVMSHM 49 (74)
T ss_dssp HSCCHHHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 9999999999999999878999999999874
No 324
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=83.97 E-value=0.86 Score=43.02 Aligned_cols=70 Identities=26% Similarity=0.310 Sum_probs=46.5
Q ss_pred cccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhh
Q 006634 496 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI 575 (637)
Q Consensus 496 vLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~ 575 (637)
.|..+.| +.+|||+-||.|.+...+.+. +++|+++...+..+.. +..+...|+.++..
T Consensus 41 ~l~~~~~-~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~~~------- 98 (219)
T 1vlm_A 41 AVKCLLP-EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR-------GVFVLKGTAENLPL------- 98 (219)
T ss_dssp HHHHHCC-SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT-------TCEEEECBTTBCCS-------
T ss_pred HHHHhCC-CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc-------CCEEEEcccccCCC-------
Confidence 3444445 779999999999998877554 7899999988776542 22244566655431
Q ss_pred hccCCccEEEEcC
Q 006634 576 HKLGSIDFVICQN 588 (637)
Q Consensus 576 ~~~g~~DLVIGGp 588 (637)
..+.+|+|+...
T Consensus 99 -~~~~fD~v~~~~ 110 (219)
T 1vlm_A 99 -KDESFDFALMVT 110 (219)
T ss_dssp -CTTCEEEEEEES
T ss_pred -CCCCeeEEEEcc
Confidence 113577777543
No 325
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=83.06 E-value=1.8 Score=38.80 Aligned_cols=39 Identities=21% Similarity=0.130 Sum_probs=33.2
Q ss_pred hhHHHHHHHhcCCCH-HHHHHHHHHhCCCCcHHHHHHHHHHh
Q 006634 77 HIEKRASLLMMNFSV-NEVDFALDKLGKDAPVYELVDFITAA 117 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~-eeV~~AI~~~G~da~i~~Lld~I~a~ 117 (637)
...++..|..|||+. +.+.+|+.+++-+ ++.-||+|+..
T Consensus 66 ~~~qL~qL~eMGF~d~~~ni~AL~~t~Gd--ve~AVe~L~~~ 105 (108)
T 2cwb_A 66 WQPQLQQLRDMGIQDDELSLRALQATGGD--IQAALELIFAG 105 (108)
T ss_dssp THHHHHHHHTTTCCCHHHHHHHHHHHTSC--HHHHHHHHHHT
T ss_pred hHHHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHhc
Confidence 467899999999964 7999999999954 68999999875
No 326
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=82.95 E-value=0.98 Score=35.63 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=26.0
Q ss_pred hhhHHHHHhcCCCHHHHHHHHHhhCCCCCh
Q 006634 150 MEITLQLLEMGFSENQVSLAIEKFGSKTPI 179 (637)
Q Consensus 150 ~~k~~~L~~MGfseeEas~Ai~r~G~da~i 179 (637)
.+++..|+.|||+.++|-.|+..+.-+..+
T Consensus 12 ~~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~ 41 (52)
T 2ooa_A 12 DAKIAKLMGEGYAFEEVKRALEIAQNNVEV 41 (52)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCHHH
Confidence 378999999999999999999998887433
No 327
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=82.52 E-value=2.6 Score=41.70 Aligned_cols=80 Identities=11% Similarity=0.082 Sum_probs=47.0
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
..+.+||||-||.|+++.-+.+. |=. -.|+++|+++...+.+...-.. ......+.+|++..... . ...+.
T Consensus 75 ~~g~~VLDlG~GtG~~t~~la~~v~~~-G~V~avD~s~~~l~~l~~~a~~--r~nv~~i~~Da~~~~~~--~---~~~~~ 146 (232)
T 3id6_C 75 RKGTKVLYLGAASGTTISHVSDIIELN-GKAYGVEFSPRVVRELLLVAQR--RPNIFPLLADARFPQSY--K---SVVEN 146 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHTTT-SEEEEEECCHHHHHHHHHHHHH--CTTEEEEECCTTCGGGT--T---TTCCC
T ss_pred CCCCEEEEEeecCCHHHHHHHHHhCCC-CEEEEEECcHHHHHHHHHHhhh--cCCeEEEEcccccchhh--h---ccccc
Confidence 34789999999999998777643 321 1478999999764333221111 12223456787653210 0 01246
Q ss_pred ccEEEEcCC
Q 006634 581 IDFVICQNS 589 (637)
Q Consensus 581 ~DLVIGGpP 589 (637)
||+|+-..|
T Consensus 147 ~D~I~~d~a 155 (232)
T 3id6_C 147 VDVLYVDIA 155 (232)
T ss_dssp EEEEEECCC
T ss_pred eEEEEecCC
Confidence 888875543
No 328
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=82.50 E-value=1 Score=43.81 Aligned_cols=72 Identities=24% Similarity=0.198 Sum_probs=49.4
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
+.+.+|||+=||.|.+...|.+.|. .++++|+++......+. .....+..+|+.++.- ..+.|
T Consensus 33 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~------~~~~~~~~~d~~~~~~--------~~~~f 95 (261)
T 3ege_A 33 PKGSVIADIGAGTGGYSVALANQGL---FVYAVEPSIVMRQQAVV------HPQVEWFTGYAENLAL--------PDKSV 95 (261)
T ss_dssp CTTCEEEEETCTTSHHHHHHHTTTC---EEEEECSCHHHHHSSCC------CTTEEEECCCTTSCCS--------CTTCB
T ss_pred CCCCEEEEEcCcccHHHHHHHhCCC---EEEEEeCCHHHHHHHHh------ccCCEEEECchhhCCC--------CCCCE
Confidence 3568999999999999999998875 36899999976543221 1122345677766542 12468
Q ss_pred cEEEEcCCC
Q 006634 582 DFVICQNSV 590 (637)
Q Consensus 582 DLVIGGpPC 590 (637)
|+|+.....
T Consensus 96 D~v~~~~~l 104 (261)
T 3ege_A 96 DGVISILAI 104 (261)
T ss_dssp SEEEEESCG
T ss_pred eEEEEcchH
Confidence 888876543
No 329
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=82.06 E-value=1.1 Score=38.21 Aligned_cols=31 Identities=23% Similarity=0.257 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006634 1 MGFSPSLVDKVIEEKGQDNVDLLLETLIEYN 31 (637)
Q Consensus 1 MGF~~e~V~KaI~e~Ge~~~d~iLE~Lltys 31 (637)
|||+++.+.||+...|..|.+.=+|.|+...
T Consensus 39 MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~ 69 (84)
T 1vek_A 39 MGFSQLHCQKAAINTSNAGVEEAMNWLLSHM 69 (84)
T ss_dssp HTCCHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 9999999999999999889999999999874
No 330
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=80.65 E-value=1.2 Score=35.06 Aligned_cols=38 Identities=21% Similarity=0.238 Sum_probs=29.6
Q ss_pred hhhHHHHHhcCCCHHHH-HHHHHhhCCCCChhhhhhhhhhc
Q 006634 150 MEITLQLLEMGFSENQV-SLAIEKFGSKTPISELADKIFSG 189 (637)
Q Consensus 150 ~~k~~~L~~MGfseeEa-s~Ai~r~G~da~i~eLvD~I~Aa 189 (637)
.+++..|..|||+.+++ ..|+.+++-| |+.-++.++..
T Consensus 10 ~~~l~~L~~MGF~d~~~n~~AL~~~~Gd--v~~Ave~L~~~ 48 (54)
T 2dah_A 10 QVQLEQLRSMGFLNREANLQALIATGGD--VDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCC--HHHHHHHHHhC
Confidence 35777999999988875 8899999966 55557777654
No 331
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=80.50 E-value=2.1 Score=41.82 Aligned_cols=85 Identities=12% Similarity=0.105 Sum_probs=51.7
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhh------cCCCCCccccccccccChhhHHHhhh
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES------SGQTGELVQIEDIQALTTKKFESLIH 576 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~------tn~~g~l~~~~DI~~Lt~~~Ie~l~~ 576 (637)
.+.+||||=||.|.+.+.|.+.. +-..+++||+++......+..... .+.....++.+|+.+. +...+
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~----l~~~~- 119 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKH----LPNFF- 119 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTC----HHHHC-
T ss_pred CCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHh----hhhhC-
Confidence 45789999999999999987763 113578999999887655543221 1111223456777641 11111
Q ss_pred ccCCccEEEEcCCCCCc
Q 006634 577 KLGSIDFVICQNSVPQI 593 (637)
Q Consensus 577 ~~g~~DLVIGGpPCQ~F 593 (637)
..+.+|+|+-.+|..-+
T Consensus 120 ~~~~~D~v~~~~~dp~~ 136 (235)
T 3ckk_A 120 YKGQLTKMFFLFPDPHF 136 (235)
T ss_dssp CTTCEEEEEEESCC---
T ss_pred CCcCeeEEEEeCCCchh
Confidence 23579999877765443
No 332
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=80.43 E-value=0.91 Score=46.76 Aligned_cols=38 Identities=13% Similarity=0.193 Sum_probs=31.7
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHH
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRR 542 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~ 542 (637)
.+.+|||+=||.|+++..|.+.|. .-|++||+++....
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~ga--~~V~aVDvs~~mL~ 122 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNGA--KLVYAVDVGTNQLV 122 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSSSCSC
T ss_pred cccEEEecCCCccHHHHHHHhCCC--CEEEEEECCHHHHH
Confidence 567899999999999998888885 35899999987543
No 333
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=80.32 E-value=1.2 Score=43.21 Aligned_cols=76 Identities=16% Similarity=0.106 Sum_probs=50.4
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
+.+-+|||+=||.|.....+.+.+. ..+++||+++...+..+.+....+ ....++.+|...+... ...+.|
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~-~~~~~~~~~a~~~~~~------~~~~~F 129 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPT------LPDGHF 129 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGG------SCTTCE
T ss_pred cCCCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCC-CceEEEeehHHhhccc------ccccCC
Confidence 4688999999999999888877653 457899999999888877654332 1222334454332211 112568
Q ss_pred cEEEE
Q 006634 582 DFVIC 586 (637)
Q Consensus 582 DLVIG 586 (637)
|.|+.
T Consensus 130 D~i~~ 134 (236)
T 3orh_A 130 DGILY 134 (236)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 98874
No 334
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=80.05 E-value=1.7 Score=45.35 Aligned_cols=83 Identities=22% Similarity=0.252 Sum_probs=52.0
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhc-----C---CCCCccccccccccChhhHHH
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS-----G---QTGELVQIEDIQALTTKKFES 573 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~t-----n---~~g~l~~~~DI~~Lt~~~Ie~ 573 (637)
.+.+||||-||.|.+...|.+. |-. -.++++|+++.+....+.+.... + .....+..+|+.++.... .
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~--~ 159 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEH-GKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAE--P 159 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTT-CEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCB--S
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcc--c
Confidence 4679999999999999888764 211 24789999999888777643211 0 022335667887653210 0
Q ss_pred hhhccCCccEEEEcC
Q 006634 574 LIHKLGSIDFVICQN 588 (637)
Q Consensus 574 l~~~~g~~DLVIGGp 588 (637)
.....+.||+|+...
T Consensus 160 ~~~~~~~fD~V~~~~ 174 (383)
T 4fsd_A 160 EGVPDSSVDIVISNC 174 (383)
T ss_dssp CCCCTTCEEEEEEES
T ss_pred CCCCCCCEEEEEEcc
Confidence 000124799999754
No 335
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=79.35 E-value=1.8 Score=47.77 Aligned_cols=83 Identities=13% Similarity=0.144 Sum_probs=47.8
Q ss_pred CCcccccCCCCChHHHHHHH-c---CC--------ceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhH
Q 006634 504 GLTMLSVFSGIGGAEVTLHR-L---GI--------KLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKF 571 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~-a---Gi--------~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~I 571 (637)
+-+|+|-.||.|||-++..+ + +- .-..++++|+++.+.++.+.+.--++.....+..+|--......
T Consensus 218 ~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~~- 296 (530)
T 3ufb_A 218 GESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLRE- 296 (530)
T ss_dssp TCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGGG-
T ss_pred CCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchhh-
Confidence 46899999999999765432 1 10 11247899999998887765433222211223333321111000
Q ss_pred HHhhhccCCccEEEEcCCC
Q 006634 572 ESLIHKLGSIDFVICQNSV 590 (637)
Q Consensus 572 e~l~~~~g~~DLVIGGpPC 590 (637)
......||+|+|=||=
T Consensus 297 ---~~~~~~fD~Il~NPPf 312 (530)
T 3ufb_A 297 ---MGDKDRVDVILTNPPF 312 (530)
T ss_dssp ---CCGGGCBSEEEECCCS
T ss_pred ---hcccccceEEEecCCC
Confidence 0112479999999994
No 336
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=78.80 E-value=1.3 Score=39.57 Aligned_cols=39 Identities=15% Similarity=0.390 Sum_probs=31.3
Q ss_pred hhhHHHHHhc-CCCHHHHHHHHHhhCCCCChhhhhhhhhhcc
Q 006634 150 MEITLQLLEM-GFSENQVSLAIEKFGSKTPISELADKIFSGQ 190 (637)
Q Consensus 150 ~~k~~~L~~M-GfseeEas~Ai~r~G~da~i~eLvD~I~Aaq 190 (637)
.+++..|+.| ||++++|..|+..|+-| ++.-+++++...
T Consensus 40 eekVk~L~EmtG~seeeAr~AL~~~ngD--l~~AI~~Lleg~ 79 (104)
T 1wj7_A 40 EEKVKQLIDITGKNQDECVIALHDCNGD--VNRAINVLLEGN 79 (104)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHTCS
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence 4688899999 99999999999999988 444466665443
No 337
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=78.79 E-value=5.8 Score=40.40 Aligned_cols=80 Identities=16% Similarity=0.087 Sum_probs=51.3
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
..+.+|||+-||.|.+...+.+.+-.. .++++|+ +......+......+.. ...+..+|+.+- + ..+
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~------~~~ 248 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHL-RGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP----L------PVT 248 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC----C------SCC
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCC-EEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCc----C------CCC
Confidence 456899999999999999998875222 4678999 88777777665443221 122445666431 1 124
Q ss_pred ccEEEEcCCCCCc
Q 006634 581 IDFVICQNSVPQI 593 (637)
Q Consensus 581 ~DLVIGGpPCQ~F 593 (637)
+|+|+.......+
T Consensus 249 ~D~v~~~~vl~~~ 261 (374)
T 1qzz_A 249 ADVVLLSFVLLNW 261 (374)
T ss_dssp EEEEEEESCGGGS
T ss_pred CCEEEEeccccCC
Confidence 8888876544433
No 338
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=78.55 E-value=1.5 Score=34.65 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=24.9
Q ss_pred hhhHHHHHhcCCCHHHHHHHHHhhCCCC
Q 006634 150 MEITLQLLEMGFSENQVSLAIEKFGSKT 177 (637)
Q Consensus 150 ~~k~~~L~~MGfseeEas~Ai~r~G~da 177 (637)
..++..|+.|||+.++|-.|+..+.-+.
T Consensus 10 e~~I~~L~~lGF~r~~ai~AL~~a~nnv 37 (53)
T 2d9s_A 10 SSEIERLMSQGYSYQDIQKALVIAHNNI 37 (53)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcCCH
Confidence 3678899999999999999999998873
No 339
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=77.86 E-value=3.1 Score=33.01 Aligned_cols=39 Identities=18% Similarity=0.103 Sum_probs=32.8
Q ss_pred hHHHHHHHhcCC-CHHHHHHHHHHhCCCCcHHHHHHHHHHhh
Q 006634 78 IEKRASLLMMNF-SVNEVDFALDKLGKDAPVYELVDFITAAQ 118 (637)
Q Consensus 78 ~~~~~~lv~MGF-~~eeV~~AI~~~G~da~i~~Lld~I~a~q 118 (637)
..++..|..||| .++.-..|++++|-+ ++..++.|+...
T Consensus 10 a~~L~~L~eMGF~D~~~N~~aL~~~~gn--v~~aI~~Ll~~~ 49 (54)
T 2cp8_A 10 AALMAHLFEMGFCDRQLNLRLLKKHNYN--ILQVVTELLQLS 49 (54)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHTTTTTC--HHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCC--HHHHHHHHHhcc
Confidence 447889999999 888999999999875 678888888764
No 340
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=77.74 E-value=1.1 Score=46.10 Aligned_cols=43 Identities=16% Similarity=0.112 Sum_probs=36.7
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHh
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 548 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~ 548 (637)
.+-.|||.|||.|...++..++|-+ .+++|+++....+.+..+
T Consensus 252 ~~~~VlDpF~GsGtt~~aa~~~gr~---~ig~e~~~~~~~~~~~r~ 294 (323)
T 1boo_A 252 PDDLVVDIFGGSNTTGLVAERESRK---WISFEMKPEYVAASAFRF 294 (323)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHGGG
T ss_pred CCCEEEECCCCCCHHHHHHHHcCCC---EEEEeCCHHHHHHHHHHH
Confidence 4567999999999999999999964 578999999988877654
No 341
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=77.62 E-value=3.2 Score=41.48 Aligned_cols=79 Identities=10% Similarity=0.067 Sum_probs=50.4
Q ss_pred CCCCcccccCCCCChHHHHHHHc--CCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL 578 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~a--Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~ 578 (637)
..+.+|||+-||.|.+...+.+. +. .++++|++ ......+......+... ..+..+|+.+... .
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~ 230 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNA---EIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDY---------G 230 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTC---EEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCC---------C
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCC---eEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCC---------C
Confidence 55689999999999999998876 44 36789999 66666665543322111 2234556654321 1
Q ss_pred CCccEEEEcCCCCCc
Q 006634 579 GSIDFVICQNSVPQI 593 (637)
Q Consensus 579 g~~DLVIGGpPCQ~F 593 (637)
+++|+|+....-..+
T Consensus 231 ~~~D~v~~~~~l~~~ 245 (335)
T 2r3s_A 231 NDYDLVLLPNFLHHF 245 (335)
T ss_dssp SCEEEEEEESCGGGS
T ss_pred CCCcEEEEcchhccC
Confidence 248888876655444
No 342
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=77.28 E-value=0.67 Score=45.49 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=37.4
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhh
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 549 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~ 549 (637)
.+.+||||=||.|.+...+...|+ ..|+++|+++.+.+..+.|..
T Consensus 55 ~g~~vLDiGCG~G~~~~~~~~~~~--~~v~g~D~s~~~l~~a~~~~~ 99 (263)
T 2a14_A 55 QGDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLK 99 (263)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHH
T ss_pred CCceEEEeCCCccHHHHHHHHhhh--cceeeccccHHHHHHHHHHHh
Confidence 467899999999988777777886 468899999999998887653
No 343
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=77.14 E-value=2.2 Score=34.35 Aligned_cols=35 Identities=23% Similarity=0.411 Sum_probs=27.8
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhh---CCCCChhhhhhh
Q 006634 151 EITLQLLEMGFSENQVSLAIEKF---GSKTPISELADK 185 (637)
Q Consensus 151 ~k~~~L~~MGfseeEas~Ai~r~---G~da~i~eLvD~ 185 (637)
|-+..|+.+||++.||..|+.++ .++.++++++-.
T Consensus 19 ea~~AL~aLGY~~~ea~kav~~v~~~~~~~~~e~lIr~ 56 (62)
T 1ixs_A 19 EAVMALAALGFKEAQARAVVLDLLAQNPKARAQDLIKE 56 (62)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 45569999999999999999998 456677776543
No 344
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=77.06 E-value=5.5 Score=43.14 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=33.2
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHH
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRIL 544 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~ 544 (637)
..+.+||||-||.|.+.+.+.+. |. ..|++||+++.+....
T Consensus 241 ~~g~~VLDLGCGsG~la~~LA~~~g~--~~V~GVDis~~~l~~A 282 (433)
T 1u2z_A 241 KKGDTFMDLGSGVGNCVVQAALECGC--ALSFGCEIMDDASDLT 282 (433)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCC--SEEEEEECCHHHHHHH
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHCCC--CEEEEEeCCHHHHHHH
Confidence 35678999999999999988874 53 3589999999986655
No 345
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=75.97 E-value=2.8 Score=39.03 Aligned_cols=74 Identities=12% Similarity=0.112 Sum_probs=45.9
Q ss_pred hcccchhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCcccccccc
Q 006634 485 FQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQ 564 (637)
Q Consensus 485 fqvdtv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~ 564 (637)
|....+...+..|... +.+.+|||+-||.|.+...+ +. .++++|+++.. ..+...|+.
T Consensus 50 ~~~~~~~~~~~~l~~~-~~~~~vLDiG~G~G~~~~~l---~~---~v~~~D~s~~~---------------~~~~~~d~~ 107 (215)
T 2zfu_A 50 WPLQPVDRIARDLRQR-PASLVVADFGCGDCRLASSI---RN---PVHCFDLASLD---------------PRVTVCDMA 107 (215)
T ss_dssp SSSCHHHHHHHHHHTS-CTTSCEEEETCTTCHHHHHC---CS---CEEEEESSCSS---------------TTEEESCTT
T ss_pred cchhHHHHHHHHHhcc-CCCCeEEEECCcCCHHHHHh---hc---cEEEEeCCCCC---------------ceEEEeccc
Confidence 4333333344444433 45679999999999987665 33 46889998771 114456776
Q ss_pred ccChhhHHHhhhccCCccEEEEcC
Q 006634 565 ALTTKKFESLIHKLGSIDFVICQN 588 (637)
Q Consensus 565 ~Lt~~~Ie~l~~~~g~~DLVIGGp 588 (637)
++.. ..+.||+|+...
T Consensus 108 ~~~~--------~~~~fD~v~~~~ 123 (215)
T 2zfu_A 108 QVPL--------EDESVDVAVFCL 123 (215)
T ss_dssp SCSC--------CTTCEEEEEEES
T ss_pred cCCC--------CCCCEeEEEEeh
Confidence 6431 124699999644
No 346
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=75.70 E-value=9.1 Score=38.03 Aligned_cols=81 Identities=12% Similarity=0.089 Sum_probs=52.4
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
..|.+||||-||.|.+..-+.+. |-. =.|+++|+++...+.++..... .++...+..|+.+... .....+.
T Consensus 76 kpG~~VldlG~G~G~~~~~la~~VG~~-G~V~avD~s~~~~~~l~~~a~~--~~ni~~V~~d~~~p~~-----~~~~~~~ 147 (233)
T 4df3_A 76 KEGDRILYLGIASGTTASHMSDIIGPR-GRIYGVEFAPRVMRDLLTVVRD--RRNIFPILGDARFPEK-----YRHLVEG 147 (233)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTT-CEEEEEECCHHHHHHHHHHSTT--CTTEEEEESCTTCGGG-----GTTTCCC
T ss_pred CCCCEEEEecCcCCHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhhHh--hcCeeEEEEeccCccc-----cccccce
Confidence 45899999999999999888763 432 2478999999998877654322 1222234566654332 1112357
Q ss_pred ccEEEEcCCC
Q 006634 581 IDFVICQNSV 590 (637)
Q Consensus 581 ~DLVIGGpPC 590 (637)
+|+|+.-.|.
T Consensus 148 vDvVf~d~~~ 157 (233)
T 4df3_A 148 VDGLYADVAQ 157 (233)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEEeccC
Confidence 8998865543
No 347
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=75.51 E-value=6 Score=37.74 Aligned_cols=78 Identities=12% Similarity=0.046 Sum_probs=46.4
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
+.+.+||||=||.|.++.-|.+.+=. ..|+++|+++.+.+.+...-...+ ....+.+|+..... . ....+.|
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~~-~~V~gvD~s~~~l~~~~~~a~~~~--~v~~~~~d~~~~~~--~---~~~~~~f 127 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVDE-GIIYAVEYSAKPFEKLLELVRERN--NIIPLLFDASKPWK--Y---SGIVEKV 127 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTT-SEEEEECCCHHHHHHHHHHHHHCS--SEEEECSCTTCGGG--T---TTTCCCE
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHhcCC--CeEEEEcCCCCchh--h---cccccce
Confidence 35679999999999998877654212 247899999986543332211111 22234567665311 0 0012579
Q ss_pred cEEEEc
Q 006634 582 DFVICQ 587 (637)
Q Consensus 582 DLVIGG 587 (637)
|+|+..
T Consensus 128 D~V~~~ 133 (210)
T 1nt2_A 128 DLIYQD 133 (210)
T ss_dssp EEEEEC
T ss_pred eEEEEe
Confidence 999865
No 348
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=75.21 E-value=2.3 Score=41.98 Aligned_cols=29 Identities=14% Similarity=0.182 Sum_probs=26.0
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCCCC
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKLGKDA 105 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da 105 (637)
..+++..|+.|||+++.|..|+.++|-|-
T Consensus 169 ~~~~v~~~~~mg~~~~~~~~al~~~~~~~ 197 (215)
T 1tte_A 169 DHDLIDEFESQGFEKDKIVEVLRRLGVKS 197 (215)
T ss_dssp SHHHHHHHHHHTCCHHHHHHHHHHSCCSS
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHcCCCc
Confidence 45689999999999999999999998765
No 349
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=75.13 E-value=7.6 Score=39.40 Aligned_cols=80 Identities=15% Similarity=0.116 Sum_probs=50.1
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
..+.+|||+-||.|.+...+.+.+-.+ .++.+|+ +......+.+....+.. ...++.+|+.+- + ..+
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~------~~~ 249 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHV-SATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP----L------PRK 249 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC----C------SSC
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCC-EEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCC----C------CCC
Confidence 456799999999999999998876443 4567898 77666666655433221 122445666431 1 124
Q ss_pred ccEEEEcCCCCCc
Q 006634 581 IDFVICQNSVPQI 593 (637)
Q Consensus 581 ~DLVIGGpPCQ~F 593 (637)
+|+|+.......+
T Consensus 250 ~D~v~~~~vl~~~ 262 (360)
T 1tw3_A 250 ADAIILSFVLLNW 262 (360)
T ss_dssp EEEEEEESCGGGS
T ss_pred ccEEEEcccccCC
Confidence 7888765544333
No 350
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=75.12 E-value=3.3 Score=41.93 Aligned_cols=39 Identities=23% Similarity=0.181 Sum_probs=33.3
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 006634 76 LHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA 116 (637)
Q Consensus 76 ~~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a 116 (637)
.-++++..|+.|||+++.|..|+.++|=+ ++.-++.|+.
T Consensus 214 ~~~~~v~~l~~mgf~~~~~~~al~~~nWd--~~~A~e~L~~ 252 (253)
T 3e46_A 214 EYTKKIENLCAAGFDRNAVIVALSSKSWD--VETATELLLS 252 (253)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHTTTC--HHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHhc
Confidence 34789999999999999999999999885 4677777764
No 351
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=73.60 E-value=7.7 Score=39.57 Aligned_cols=72 Identities=17% Similarity=0.110 Sum_probs=45.3
Q ss_pred hhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-Cccccccccc
Q 006634 490 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQA 565 (637)
Q Consensus 490 v~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~ 565 (637)
+...+..+. ++.+.+|||+-||.|.+...+.+..=.. .++++|+ +......+..+...+..+ ..++.+|+.+
T Consensus 179 ~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 251 (359)
T 1x19_A 179 IQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPEL-DSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYK 251 (359)
T ss_dssp HHHHHHHCC--CTTCCEEEEESCTTCHHHHHHHHHCTTC-EEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTT
T ss_pred HHHHHHhcC--CCCCCEEEEECCcccHHHHHHHHHCCCC-eEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCcccc
Confidence 344444442 4567899999999999999998873222 3578999 887777766554332222 2234455544
No 352
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=73.54 E-value=1.9 Score=42.23 Aligned_cols=40 Identities=23% Similarity=0.222 Sum_probs=33.1
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHH
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRI 543 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t 543 (637)
+.+.+||||-||.|+++..|.+.|.. .|+++|+++.....
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la~~g~~--~V~gvDis~~ml~~ 75 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVMLQNGAK--LVYALDVGTNQLAW 75 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCS--EEEEECSSCCCCCH
T ss_pred CCCCEEEEEccCCCHHHHHHHhcCCC--EEEEEcCCHHHHHH
Confidence 35678999999999999999998863 57899999876543
No 353
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=73.27 E-value=3.5 Score=39.80 Aligned_cols=82 Identities=15% Similarity=0.039 Sum_probs=48.1
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHH------HHHHHHHHhhhcCC-CCCcccccc-ccccChhhHHH
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSET------NRRILKRWWESSGQ-TGELVQIED-IQALTTKKFES 573 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~------a~~t~r~~~~~tn~-~g~l~~~~D-I~~Lt~~~Ie~ 573 (637)
.+.+|||+-||.|.+...+.+. |-. ..++++|+++. .....+......+. ....+...| +... .+.
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~~g~~-~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~- 117 (275)
T 3bkx_A 43 PGEKILEIGCGQGDLSAVLADQVGSS-GHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDD---LGP- 117 (275)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCTT-CEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTC---CGG-
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhc---cCC-
Confidence 4679999999999999988876 422 24789999985 44455544432211 111233444 2111 111
Q ss_pred hhhccCCccEEEEcCCCC
Q 006634 574 LIHKLGSIDFVICQNSVP 591 (637)
Q Consensus 574 l~~~~g~~DLVIGGpPCQ 591 (637)
...+.||+|+...+..
T Consensus 118 --~~~~~fD~v~~~~~l~ 133 (275)
T 3bkx_A 118 --IADQHFDRVVLAHSLW 133 (275)
T ss_dssp --GTTCCCSEEEEESCGG
T ss_pred --CCCCCEEEEEEccchh
Confidence 1125799998765543
No 354
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=72.08 E-value=2.8 Score=33.39 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=25.7
Q ss_pred hhhHHHHHhcCCCHHHHHHHHHhhCCCCCh
Q 006634 150 MEITLQLLEMGFSENQVSLAIEKFGSKTPI 179 (637)
Q Consensus 150 ~~k~~~L~~MGfseeEas~Ai~r~G~da~i 179 (637)
.+++..|+.|||+.+.|..|+.....|-.+
T Consensus 8 e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~ 37 (56)
T 2juj_A 8 SSEIENLMSQGYSYQDIQKALVIAQNNIEM 37 (56)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTTCSHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHhcccHHH
Confidence 467889999999999999999988887444
No 355
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=71.88 E-value=4.6 Score=42.65 Aligned_cols=85 Identities=11% Similarity=0.085 Sum_probs=54.9
Q ss_pred Hhhhhhhccc--chhhhhccc--cccCC--CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcC
Q 006634 479 ESLRHCFQTD--TLGYHLSVL--KSMFP--GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG 552 (637)
Q Consensus 479 k~Lgnsfqvd--tv~~~lsvL--K~~f~--~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn 552 (637)
|.||-.|=+| ++..+...+ ++.+. .+-+||++-.|.|.++..|...+- .+-|++||+|+.....|+....
T Consensus 28 k~lGQnFL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~-~~~vvavE~D~~l~~~L~~~~~--- 103 (353)
T 1i4w_A 28 FFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKFE--- 103 (353)
T ss_dssp CGGGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHTT---
T ss_pred CCCCcCccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCC-CCEEEEEecCHHHHHHHHHhcc---
Confidence 4556666222 334443333 22222 257899999999999999997521 1347899999999998876441
Q ss_pred CCCCccccccccccC
Q 006634 553 QTGELVQIEDIQALT 567 (637)
Q Consensus 553 ~~g~l~~~~DI~~Lt 567 (637)
...-.++.+|+-+++
T Consensus 104 ~~~l~ii~~D~l~~~ 118 (353)
T 1i4w_A 104 GSPLQILKRDPYDWS 118 (353)
T ss_dssp TSSCEEECSCTTCHH
T ss_pred CCCEEEEECCccchh
Confidence 222336789996554
No 356
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=69.54 E-value=3.9 Score=31.45 Aligned_cols=26 Identities=15% Similarity=0.186 Sum_probs=23.1
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhhCCC
Q 006634 151 EITLQLLEMGFSENQVSLAIEKFGSK 176 (637)
Q Consensus 151 ~k~~~L~~MGfseeEas~Ai~r~G~d 176 (637)
+.+..|+.|||+.+.|..|+-.+..+
T Consensus 6 ~~I~~L~s~Gf~~~~~~rAL~ia~Nn 31 (46)
T 2oo9_A 6 SEIENLMSQGYSYQDIQKALVIAQNN 31 (46)
T ss_dssp HHHHHHHHTTBCHHHHHHHHHHTTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhhcc
Confidence 56779999999999999999888776
No 357
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=69.47 E-value=4.8 Score=30.51 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=23.9
Q ss_pred CCCC-HHHHHHHHHHhCCCCHHHHHHHHHH
Q 006634 1 MGFS-PSLVDKVIEEKGQDNVDLLLETLIE 29 (637)
Q Consensus 1 MGF~-~e~V~KaI~e~Ge~~~d~iLE~Llt 29 (637)
|||+ ...+.+|++..+- |.+.-+|.|++
T Consensus 17 MGF~d~~~~~~AL~~~~g-nv~~Ave~L~~ 45 (46)
T 2bwb_A 17 MGFFDFDRNVAALRRSGG-SVQGALDSLLN 45 (46)
T ss_dssp TTCCCHHHHHHHHHHHTT-CHHHHHHHHHC
T ss_pred cCCCcHHHHHHHHHHhCC-CHHHHHHHHHc
Confidence 9996 6779999999984 78888998874
No 358
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=69.42 E-value=9.2 Score=39.77 Aligned_cols=40 Identities=13% Similarity=0.094 Sum_probs=34.6
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHH
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILK 545 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r 545 (637)
.+.+|||+=||.|.+...|.+.|.+ ++++|+++...+..+
T Consensus 107 ~~~~VLDiGcG~G~~~~~l~~~g~~---v~gvD~s~~~~~~a~ 146 (416)
T 4e2x_A 107 PDPFIVEIGCNDGIMLRTIQEAGVR---HLGFEPSSGVAAKAR 146 (416)
T ss_dssp SSCEEEEETCTTTTTHHHHHHTTCE---EEEECCCHHHHHHHH
T ss_pred CCCEEEEecCCCCHHHHHHHHcCCc---EEEECCCHHHHHHHH
Confidence 5679999999999999999999973 689999999876654
No 359
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=67.98 E-value=5.5 Score=38.34 Aligned_cols=39 Identities=10% Similarity=-0.004 Sum_probs=31.7
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 006634 76 LHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA 116 (637)
Q Consensus 76 ~~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a 116 (637)
+-.+.|..|+.|||+++.|..|...|+.+- +.=+++|+.
T Consensus 129 ee~eaI~rL~~mGF~r~~viqA~~ac~kne--e~Aan~L~~ 167 (171)
T 2qsf_X 129 EDDQAISRLCELGFERDLVIQVYFACDKNE--EAAANILFS 167 (171)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHTTTCH--HHHHHHHTT
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHcCCCH--HHHHHHHHh
Confidence 345678999999999999999999999974 444666664
No 360
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=67.74 E-value=3.2 Score=32.92 Aligned_cols=30 Identities=20% Similarity=0.430 Sum_probs=27.4
Q ss_pred CCC-CHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006634 1 MGF-SPSLVDKVIEEKGQDNVDLLLETLIEYN 31 (637)
Q Consensus 1 MGF-~~e~V~KaI~e~Ge~~~d~iLE~Lltys 31 (637)
||| ..++-.+|++.+|- |.+..++.||+..
T Consensus 19 MGF~D~~~N~~aL~~~~g-nv~~aI~~Ll~~~ 49 (54)
T 2cp8_A 19 MGFCDRQLNLRLLKKHNY-NILQVVTELLQLS 49 (54)
T ss_dssp HTCCCHHHHHHHHTTTTT-CHHHHHHHHHHHS
T ss_pred cCCCcHHHHHHHHHHcCC-CHHHHHHHHHhcc
Confidence 999 99999999999987 6999999999874
No 361
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=67.19 E-value=12 Score=38.56 Aligned_cols=76 Identities=16% Similarity=0.148 Sum_probs=51.6
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhc--cCCc
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK--LGSI 581 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~--~g~~ 581 (637)
+-.+||.-+|.||-+.++-+.+- .|+++|.|+.+....+. ... ....+++++-.++. ..+.. .+.|
T Consensus 23 gg~~VD~T~G~GGHS~~il~~~g---~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l~-----~~L~~~g~~~v 90 (285)
T 1wg8_A 23 GGVYVDATLGGAGHARGILERGG---RVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHLK-----RHLAALGVERV 90 (285)
T ss_dssp TCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGHH-----HHHHHTTCSCE
T ss_pred CCEEEEeCCCCcHHHHHHHHCCC---EEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchHH-----HHHHHcCCCCc
Confidence 44799999999999999988753 47899999999887765 422 11223455555443 22222 2579
Q ss_pred cEEEEcCCCC
Q 006634 582 DFVICQNSVP 591 (637)
Q Consensus 582 DLVIGGpPCQ 591 (637)
|.|+-..++.
T Consensus 91 DgIL~DLGvS 100 (285)
T 1wg8_A 91 DGILADLGVS 100 (285)
T ss_dssp EEEEEECSCC
T ss_pred CEEEeCCccc
Confidence 9999765543
No 362
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=66.84 E-value=3.9 Score=42.20 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=34.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCH---HHHHHHHHHh
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSE---TNRRILKRWW 548 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~---~a~~t~r~~~ 548 (637)
.+-.|||.|||.|...++..++|-+ .+++|+++ ..+.+.+..+
T Consensus 242 ~~~~vlDpF~GsGtt~~aa~~~~r~---~ig~e~~~~~~~~~~~~~~Rl 287 (319)
T 1eg2_A 242 PGSTVLDFFAGSGVTARVAIQEGRN---SICTDAAPVFKEYYQKQLTFL 287 (319)
T ss_dssp TTCEEEETTCTTCHHHHHHHHHTCE---EEEEESSTHHHHHHHHHHHHC
T ss_pred CCCEEEecCCCCCHHHHHHHHcCCc---EEEEECCccHHHHHHHHHHHH
Confidence 4567999999999999999999964 57899999 6666655444
No 363
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=66.41 E-value=1.9 Score=44.14 Aligned_cols=32 Identities=16% Similarity=0.095 Sum_probs=26.6
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeec
Q 006634 501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIET 536 (637)
Q Consensus 501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEi 536 (637)
++.+.+||||-||.||++.-+.+.| .|++||+
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~~----~V~gvD~ 111 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGLK----NVREVKG 111 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTST----TEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhcC----CEEEEec
Confidence 4456899999999999999888874 3678888
No 364
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=66.33 E-value=3.6 Score=39.83 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=24.8
Q ss_pred hhhHHHHHhcCCCHHHHHHHHHhhCCC
Q 006634 150 MEITLQLLEMGFSENQVSLAIEKFGSK 176 (637)
Q Consensus 150 ~~k~~~L~~MGfseeEas~Ai~r~G~d 176 (637)
.+|+..|+.|||++++|..|+.+++=|
T Consensus 164 eekV~~l~~MGf~~~~a~~AL~~~~wd 190 (201)
T 3k9o_A 164 TKKIENLCAMGFDRNAVIVALSSKSWD 190 (201)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence 578889999999999999999999876
No 365
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=66.23 E-value=4.5 Score=43.93 Aligned_cols=74 Identities=12% Similarity=0.185 Sum_probs=46.1
Q ss_pred CCCCcccccCCC------CChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhh
Q 006634 502 PGGLTMLSVFSG------IGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI 575 (637)
Q Consensus 502 ~~~l~vLsLFSG------iGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~ 575 (637)
..+.+||||=|| .||.++.+-+.-++--.|+++|+++... . ......++.+|+.++.- ...+.
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~---~~~rI~fv~GDa~dlpf--~~~l~ 283 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------V---DELRIRTIQGDQNDAEF--LDRIA 283 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------G---CBTTEEEEECCTTCHHH--HHHHH
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------h---cCCCcEEEEecccccch--hhhhh
Confidence 456899999999 6888877665311212478999999862 1 11223356788876532 11111
Q ss_pred hccCCccEEEE
Q 006634 576 HKLGSIDFVIC 586 (637)
Q Consensus 576 ~~~g~~DLVIG 586 (637)
...+.||+|+.
T Consensus 284 ~~d~sFDlVis 294 (419)
T 3sso_A 284 RRYGPFDIVID 294 (419)
T ss_dssp HHHCCEEEEEE
T ss_pred cccCCccEEEE
Confidence 22468999984
No 366
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=66.04 E-value=10 Score=39.83 Aligned_cols=87 Identities=20% Similarity=0.105 Sum_probs=49.3
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCC--CCccccc---chhh
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNED--KSDETLY---GTME 151 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~~~~~~~e~~d~~~d~d~~~~e--~~~e~~~---~~~~ 151 (637)
..+.+..|+.|||+++.|..+|...-.=-. ..|.+.|-....++-..+ +.- .- ..+.-+. ..+.
T Consensus 46 ~e~~l~~L~d~Gfs~~~i~~il~~~P~il~-~~l~~~i~~L~~LGls~e---------~V~-kiL~k~P~lL~~s~e~L~ 114 (335)
T 4fp9_B 46 LERVMSSLLDMGFSNAHINELLSVRRGASL-QQLLDIISEFILLGLNPE---------PVC-VVLKKSPQLLKLPIMQMR 114 (335)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHCSSCCH-HHHHHHHHHHHHTTCCHH---------HHH-HHHHHCGGGGGSCHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhCcccch-hHHHHHHHHHHHcCCCHH---------HHH-HHHHhChhhccCCHHHHH
Confidence 456677899999999999999999854321 333333332222221100 000 00 0001010 1233
Q ss_pred -hHHHHHhcCCCHHHHHHHHHhhC
Q 006634 152 -ITLQLLEMGFSENQVSLAIEKFG 174 (637)
Q Consensus 152 -k~~~L~~MGfseeEas~Ai~r~G 174 (637)
++.+|.++|++++++...|.+|-
T Consensus 115 ~~l~fL~~lGl~~~~i~~ll~~~P 138 (335)
T 4fp9_B 115 KRSSYLQKLGLGEGKLKRVLYCCP 138 (335)
T ss_dssp HHHHHHHHTTCTTTTHHHHHHHCG
T ss_pred HHHHHHHHcCCCHHHHHHHHHhCc
Confidence 33488899999999998888874
No 367
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=64.97 E-value=5.6 Score=31.73 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=25.1
Q ss_pred CCCC-HHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006634 1 MGFS-PSLVDKVIEEKGQDNVDLLLETLIEY 30 (637)
Q Consensus 1 MGF~-~e~V~KaI~e~Ge~~~d~iLE~Llty 30 (637)
|||+ .+.+.+|++..+- |.+.-+|.|+.-
T Consensus 27 MGF~d~~~~~~AL~~~~g-nve~Ave~L~~~ 56 (58)
T 1wr1_B 27 MGFFDFDRNVAALRRSGG-SVQGALDSLLNG 56 (58)
T ss_dssp HTCCCHHHHHHHHHHHTS-CHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHhCC-CHHHHHHHHHhC
Confidence 9995 7799999999984 799999999863
No 368
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=64.06 E-value=7.8 Score=37.91 Aligned_cols=40 Identities=20% Similarity=0.207 Sum_probs=32.4
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHh-CCCCcHHHHHHHHH
Q 006634 76 LHIEKRASLLMMNFSVNEVDFALDKL-GKDAPVYELVDFIT 115 (637)
Q Consensus 76 ~~~~~~~~lv~MGF~~eeV~~AI~~~-G~da~i~~Lld~I~ 115 (637)
..++.++.|+.+||++.++.+|++++ .++.++++|+-.-+
T Consensus 159 ~~~ea~~AL~~LGy~~~ea~~av~~~~~~~~~~e~lir~AL 199 (203)
T 1cuk_A 159 AEQEAVARLVALGYKPQEASRMVSKIARPDASSETLIREAL 199 (203)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHSCCSSCCHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHhcccCCCHHHHHHHHH
Confidence 34688999999999999999999998 55666777765543
No 369
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=63.99 E-value=8.8 Score=37.00 Aligned_cols=64 Identities=16% Similarity=0.081 Sum_probs=38.1
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHH-HH---HHHHhhhcCCCCCccccccccccC
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNR-RI---LKRWWESSGQTGELVQIEDIQALT 567 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~-~t---~r~~~~~tn~~g~l~~~~DI~~Lt 567 (637)
.+-+|||+=||.|.+...+.+..-. ..|++||+++.+. +. .+......+.....+..+|+..+.
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~ 91 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQN-TFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLP 91 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTT-EEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCC
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhh
Confidence 4568999999999999888754322 3478999994432 21 122111111122234567777763
No 370
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=62.50 E-value=18 Score=36.90 Aligned_cols=65 Identities=15% Similarity=0.142 Sum_probs=44.2
Q ss_pred CCCCcccccCC------CCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCcc-ccccccccChhhHHHh
Q 006634 502 PGGLTMLSVFS------GIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELV-QIEDIQALTTKKFESL 574 (637)
Q Consensus 502 ~~~l~vLsLFS------GiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~-~~~DI~~Lt~~~Ie~l 574 (637)
+.+.+||||=| |.|+ .+..+.+|-. -.|+++|+++. + . +..+ +.+|+.++...
T Consensus 62 ~~g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~-~~V~gvDis~~----v------~---~v~~~i~gD~~~~~~~----- 121 (290)
T 2xyq_A 62 PYNMRVIHFGAGSDKGVAPGT-AVLRQWLPTG-TLLVDSDLNDF----V------S---DADSTLIGDCATVHTA----- 121 (290)
T ss_dssp CTTCEEEEESCCCTTSBCHHH-HHHHHHSCTT-CEEEEEESSCC----B------C---SSSEEEESCGGGCCCS-----
T ss_pred CCCCEEEEeCCCCCCCCCcHH-HHHHHHcCCC-CEEEEEECCCC----C------C---CCEEEEECccccCCcc-----
Confidence 45789999999 4477 6666776522 24789999987 1 1 2335 67898875421
Q ss_pred hhccCCccEEEEcCCC
Q 006634 575 IHKLGSIDFVICQNSV 590 (637)
Q Consensus 575 ~~~~g~~DLVIGGpPC 590 (637)
+.||+|+.-.++
T Consensus 122 ----~~fD~Vvsn~~~ 133 (290)
T 2xyq_A 122 ----NKWDLIISDMYD 133 (290)
T ss_dssp ----SCEEEEEECCCC
T ss_pred ----CcccEEEEcCCc
Confidence 479999976443
No 371
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=59.83 E-value=6.8 Score=32.80 Aligned_cols=29 Identities=14% Similarity=0.291 Sum_probs=25.5
Q ss_pred CCC-CHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006634 1 MGF-SPSLVDKVIEEKGQDNVDLLLETLIEY 30 (637)
Q Consensus 1 MGF-~~e~V~KaI~e~Ge~~~d~iLE~Llty 30 (637)
||| ..+.|.+|++..+ .|.+.-+|.|+.-
T Consensus 39 MGF~dr~~~~~AL~~t~-Gnve~Ave~L~~~ 68 (74)
T 1vej_A 39 LGFANRDANLQALVATD-GDIHAAIEMLLGA 68 (74)
T ss_dssp HTCCCHHHHHHHHHHTT-SCHHHHHHHHHTC
T ss_pred cCCCcHHHHHHHHHHhC-CCHHHHHHHHHhC
Confidence 999 5899999999988 4799999999964
No 372
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=59.01 E-value=13 Score=31.01 Aligned_cols=32 Identities=25% Similarity=0.305 Sum_probs=28.6
Q ss_pred chhhHHHHHHHhcCCCHHHHHHHHHHhCCCCc
Q 006634 75 GLHIEKRASLLMMNFSVNEVDFALDKLGKDAP 106 (637)
Q Consensus 75 s~~~~~~~~lv~MGF~~eeV~~AI~~~G~da~ 106 (637)
+.-++++.+|.+-|.+++||..|+++.|...+
T Consensus 33 sp~~~K~~FL~sKGLt~eEI~~Al~ra~~~~~ 64 (70)
T 2w84_A 33 SPLATRRAFLKKKGLTDEEIDMAFQQSGTAAD 64 (70)
T ss_dssp SCHHHHHHHHHHTTCCHHHHHHHHHHHTCCCC
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHccCCCC
Confidence 55788999999999999999999999998654
No 373
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=58.00 E-value=44 Score=32.65 Aligned_cols=81 Identities=14% Similarity=0.177 Sum_probs=44.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCcccccchhhhHH-HHH
Q 006634 79 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITL-QLL 157 (637)
Q Consensus 79 ~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~~~~~~~e~~d~~~d~d~~~~e~~~e~~~~~~~k~~-~L~ 157 (637)
.....|..-|++.+.|..|++++-+++.. +++.-+..-.. +... ..+......|+. +|.
T Consensus 131 ~I~~eL~~KGI~~~~I~~al~~~~~~~e~-e~a~~l~~Kk~-~~~~------------------~~~~~~~k~K~~~~L~ 190 (221)
T 3d5l_A 131 IIRQHLRQKGIGESDIDDALTQFTPEVQA-ELAKKLALKLF-RRYR------------------NQPERRREQKVQQGLT 190 (221)
T ss_dssp HHHHHHHHTTCCHHHHHHHGGGCCHHHHH-HHHHHHHHHHH-HHTT------------------TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhCCHHHHH-HHHHHHHHHHH-hhcc------------------CCChHHHHHHHHHHHH
Confidence 34568889999999999999988332221 12222222111 1100 000112245665 999
Q ss_pred hcCCCHHHHHHHHHhhCCCCCh
Q 006634 158 EMGFSENQVSLAIEKFGSKTPI 179 (637)
Q Consensus 158 ~MGfseeEas~Ai~r~G~da~i 179 (637)
.=||+-+.+..|+..+..+...
T Consensus 191 rrGFs~~~I~~vl~~~~~~~~~ 212 (221)
T 3d5l_A 191 TKGFSSSVYEMIKDEVVPQPDL 212 (221)
T ss_dssp HTTCCHHHHHHHTTC-------
T ss_pred hCCCCHHHHHHHHHhccchhhh
Confidence 9999999999998877555443
No 374
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=58.00 E-value=9.2 Score=40.93 Aligned_cols=74 Identities=14% Similarity=0.180 Sum_probs=50.2
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006634 501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 580 (637)
Q Consensus 501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 580 (637)
+..|++||||=|..||.+.-+.+.|. .|+|||+.+-.-... ..++..++.+|...+... .+.
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg~---~V~aVD~~~l~~~l~-------~~~~V~~~~~d~~~~~~~--------~~~ 270 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRNM---WVYSVDNGPMAQSLM-------DTGQVTWLREDGFKFRPT--------RSN 270 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTTC---EEEEECSSCCCHHHH-------TTTCEEEECSCTTTCCCC--------SSC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCCC---EEEEEEhhhcChhhc-------cCCCeEEEeCccccccCC--------CCC
Confidence 45689999999999999999998886 378999876553222 122333455666554432 257
Q ss_pred ccEEEEcCCCCC
Q 006634 581 IDFVICQNSVPQ 592 (637)
Q Consensus 581 ~DLVIGGpPCQ~ 592 (637)
+|+|+.==-|++
T Consensus 271 ~D~vvsDm~~~p 282 (375)
T 4auk_A 271 ISWMVCDMVEKP 282 (375)
T ss_dssp EEEEEECCSSCH
T ss_pred cCEEEEcCCCCh
Confidence 999987555543
No 375
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=57.42 E-value=14 Score=36.49 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=32.3
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHh---CCCCcHHHHHHHHHH
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKL---GKDAPVYELVDFITA 116 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~---G~da~i~~Lld~I~a 116 (637)
.++.++.|+.+||++.++.+|++++ .++.++++|+-.-|.
T Consensus 164 ~~ea~~AL~~LGy~~~ea~~av~~~~~~~~~~~~e~lir~ALk 206 (212)
T 2ztd_A 164 RSPVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALRSALS 206 (212)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 4678999999999999999999997 446667777765543
No 376
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=57.26 E-value=8.1 Score=31.85 Aligned_cols=38 Identities=21% Similarity=0.116 Sum_probs=30.1
Q ss_pred hhHHHHHhcCCCHHHH-HHHHHhhCCCCChhhhhhhhhhcc
Q 006634 151 EITLQLLEMGFSENQV-SLAIEKFGSKTPISELADKIFSGQ 190 (637)
Q Consensus 151 ~k~~~L~~MGfseeEa-s~Ai~r~G~da~i~eLvD~I~Aaq 190 (637)
.++..|..|||+..++ ..|+..++-+ |+--+|.++...
T Consensus 21 ~ql~qL~~MGF~d~~an~~AL~at~Gn--ve~Ave~L~~~~ 59 (67)
T 2dna_A 21 KEMECLQAMGFVNYNANLQALIATDGD--TNAAIYKLKSSQ 59 (67)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTTSC--HHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence 5677999999988877 7899999865 666777777654
No 377
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=56.63 E-value=5.3 Score=38.45 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=27.4
Q ss_pred hhhhHHHHHhcCCCHHHHHHHHHhhCCCCCh
Q 006634 149 TMEITLQLLEMGFSENQVSLAIEKFGSKTPI 179 (637)
Q Consensus 149 ~~~k~~~L~~MGfseeEas~Ai~r~G~da~i 179 (637)
+.+++..|+.|||+++.|-.|...|+.+..+
T Consensus 130 e~eaI~rL~~mGF~r~~viqA~~ac~knee~ 160 (171)
T 2qsf_X 130 DDQAISRLCELGFERDLVIQVYFACDKNEEA 160 (171)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCHHH
Confidence 4578889999999999999999999998544
No 378
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=55.68 E-value=6.7 Score=38.72 Aligned_cols=28 Identities=14% Similarity=0.430 Sum_probs=25.3
Q ss_pred hhhHHHHHhcCCCHHHHHHHHHhhCCCC
Q 006634 150 MEITLQLLEMGFSENQVSLAIEKFGSKT 177 (637)
Q Consensus 150 ~~k~~~L~~MGfseeEas~Ai~r~G~da 177 (637)
.+|+..|+.|||+++.|..|+.+||-|.
T Consensus 170 ~~~v~~~~~mg~~~~~~~~al~~~~~~~ 197 (215)
T 1tte_A 170 HDLIDEFESQGFEKDKIVEVLRRLGVKS 197 (215)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCc
Confidence 3678899999999999999999999884
No 379
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=55.03 E-value=16 Score=32.15 Aligned_cols=53 Identities=15% Similarity=0.138 Sum_probs=38.9
Q ss_pred CCCCCccccchhhHHHHHHHhcCCCHHHHHHHHHHh----C-CCCcHHHHHHHHHHhhhc
Q 006634 66 KEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKL----G-KDAPVYELVDFITAAQIS 120 (637)
Q Consensus 66 ~~e~~~~~~s~~~~~~~~lv~MGF~~eeV~~AI~~~----G-~da~i~~Lld~I~a~q~~ 120 (637)
.++++... -.+..+...+.|||....|..+|++- | .=.++++||..|+.++..
T Consensus 18 ~~~id~~~--m~s~vV~~alemGf~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll~~~e~ 75 (104)
T 2kna_A 18 TRRIDDTI--FQNPMVQEAIRMGFSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNAQKD 75 (104)
T ss_dssp CSCCCHHH--HHCTHHHHHHHTTCCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHS
T ss_pred HHHHHHHH--HcCHHHHHHHHcCccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHh
Confidence 34444433 23447788999999999999999883 3 345689999999988763
No 380
>2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1); DNA adenine methyltransferase, methylase; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28
Probab=54.50 E-value=7.2 Score=39.71 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=32.5
Q ss_pred cccccCCC-CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHH
Q 006634 496 VLKSMFPG-GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR 546 (637)
Q Consensus 496 vLK~~f~~-~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~ 546 (637)
.+.+++|. .-+.++.|+|.|+....+.. +.++.+|+|+...+.|+.
T Consensus 27 ~i~~~lp~~~~~yvEpF~GggaV~~~~~~-----~~~i~ND~n~~Lin~y~~ 73 (284)
T 2dpm_A 27 VIRELIPKTYNRYFEPFVGGGALFFDLAP-----KDAVINDFNAELINCYQQ 73 (284)
T ss_dssp HHHHHSCSSCSCEEETTCTTCHHHHHHCC-----SEEEEEESCHHHHHHHHH
T ss_pred HHHHHhccccCEEEeecCCccHHHHhhhc-----cceeeeecchHHHHHHHH
Confidence 34445554 35799999998887665522 467889999998877653
No 381
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=54.47 E-value=5.5 Score=46.12 Aligned_cols=88 Identities=13% Similarity=0.078 Sum_probs=52.6
Q ss_pred cccccCCC---CCcccccCCCCChHHH----HHHHcC---------CceeeEEEeecCHHHHHHHHHHhhhcCC-CCCcc
Q 006634 496 VLKSMFPG---GLTMLSVFSGIGGAEV----TLHRLG---------IKLKGVISIETSETNRRILKRWWESSGQ-TGELV 558 (637)
Q Consensus 496 vLK~~f~~---~l~vLsLFSGiGGlsl----GL~~aG---------i~~k~vvaVEid~~a~~t~r~~~~~tn~-~g~l~ 558 (637)
.+++.++. ...|+++=||-|-++. |.+.+| -. ..|+|||.++.|..+++..-.+ +. ....+
T Consensus 399 al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~-~kVyAVEknp~A~~~l~~~~~N-g~~d~VtV 476 (745)
T 3ua3_A 399 ALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLK-VKLYIVEKNPNAIVTLKYMNVR-TWKRRVTI 476 (745)
T ss_dssp HHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCE-EEEEEEECCHHHHHHHHHHHHH-TTTTCSEE
T ss_pred HHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccc-cEEEEEeCChHHHHHHHHHHhc-CCCCeEEE
Confidence 34554432 4679999999999974 223344 22 2579999999887776653221 11 11335
Q ss_pred ccccccccChhhHHHhhhccCCccEEEEcC
Q 006634 559 QIEDIQALTTKKFESLIHKLGSIDFVICQN 588 (637)
Q Consensus 559 ~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGp 588 (637)
+.+|++++.. +.-....+.+||||.--
T Consensus 477 I~gd~eev~l---p~~~~~~ekVDIIVSEl 503 (745)
T 3ua3_A 477 IESDMRSLPG---IAKDRGFEQPDIIVSEL 503 (745)
T ss_dssp EESCGGGHHH---HHHHTTCCCCSEEEECC
T ss_pred EeCchhhccc---ccccCCCCcccEEEEec
Confidence 6788888753 10001235799998543
No 382
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=51.96 E-value=17 Score=33.85 Aligned_cols=67 Identities=13% Similarity=0.090 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhhcCCCCCCCcccCcCCCCCCCCCCCccCCCCCCCCCCccccchhhHHH
Q 006634 2 GFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMDEGLHIEKR 81 (637)
Q Consensus 2 GF~~e~V~KaI~e~Ge~~~d~iLE~Lltysal~~~~s~ss~s~~~~~~d~~~~~~s~~~~~~~~~~e~~~~~~s~~~~~~ 81 (637)
|++.+.|..|+++..++..+.+.+.+-.- .... ...+. ....+.+
T Consensus 95 GI~~~~I~~al~~~~~de~e~a~~l~~Kk--~~~~------------------------------~~~~~---~~k~K~~ 139 (162)
T 3dfg_A 95 GLDSDAVSAAMATFEGDWTENALDLIRRR--FGED------------------------------GPVDL---AQRRKAA 139 (162)
T ss_dssp TCCHHHHHHHHTTCCSCHHHHHHHHHHHH--HCTT------------------------------CCCSH---HHHHHHH
T ss_pred CCCHHHHHHHHHhCcHhHHHHHHHHHHHh--cCCC------------------------------CCCCH---HHHHHHH
Confidence 88999999999998654334444433321 1100 00000 2456777
Q ss_pred HHHHhcCCCHHHHHHHHHHhCC
Q 006634 82 ASLLMMNFSVNEVDFALDKLGK 103 (637)
Q Consensus 82 ~~lv~MGF~~eeV~~AI~~~G~ 103 (637)
.+|+.=||+.+.|..||++..+
T Consensus 140 ~~L~rrGF~~~~I~~~l~~~~~ 161 (162)
T 3dfg_A 140 DLLARRGFDGNSIRLATRFDLE 161 (162)
T ss_dssp HHHHHTTCCHHHHHHHTTC---
T ss_pred HHHHHCCCCHHHHHHHHhcCcC
Confidence 8999999999999999876544
No 383
>2g1p_A DNA adenine methylase; DAM methylation, GATC recognition, base flipping, bacterial factor, transferase-DNA complex; HET: DNA SAH; 1.89A {Escherichia coli} PDB: 2ore_D*
Probab=51.95 E-value=6.4 Score=39.89 Aligned_cols=47 Identities=15% Similarity=0.206 Sum_probs=33.0
Q ss_pred ccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHH
Q 006634 495 SVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR 546 (637)
Q Consensus 495 svLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~ 546 (637)
..+.+++|..-+.++.|+|.|+....+ . .+.++.+|+|+.....|+.
T Consensus 19 ~~i~~~~p~~~~yvEpF~Ggg~V~~~~--~---~~~~i~ND~n~~lin~y~~ 65 (278)
T 2g1p_A 19 DDIKRHLPKGECLVEPFVGAGSVFLNT--D---FSRYILADINSDLISLYNI 65 (278)
T ss_dssp HHHHHHCCCCSEEEETTCTTCHHHHTC--C---CSEEEEEESCHHHHHHHHH
T ss_pred HHHHHhccccCeEEeeccCccHHHHhh--c---ccceEEEeccHHHHHHHHH
Confidence 334455565568999999988875443 2 2457899999998876654
No 384
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=51.84 E-value=5 Score=40.18 Aligned_cols=35 Identities=11% Similarity=0.011 Sum_probs=29.1
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHH
Q 006634 501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSET 539 (637)
Q Consensus 501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~ 539 (637)
++.+.+||||=||.||++..+.+.| .|++||+++.
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~~----~V~gvD~s~m 106 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASRP----HVMDVRAYTL 106 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTST----TEEEEEEECC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHcC----cEEEEECchh
Confidence 3457899999999999999888773 4789999884
No 385
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=50.42 E-value=5.6 Score=40.10 Aligned_cols=35 Identities=11% Similarity=-0.041 Sum_probs=29.1
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHH
Q 006634 501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSET 539 (637)
Q Consensus 501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~ 539 (637)
++.+.+||||=||.||++..+.+.| .|++||+++.
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~~----~V~gVD~s~m 114 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQP----NVREVKAYTL 114 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTST----TEEEEEEECC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHcC----CEEEEECchh
Confidence 4457899999999999999888773 3789999984
No 386
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=50.13 E-value=11 Score=33.65 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=28.2
Q ss_pred hhhHHHHHhcCCCH-HHHHHHHHhhCCCCChhhhhhhhhh
Q 006634 150 MEITLQLLEMGFSE-NQVSLAIEKFGSKTPISELADKIFS 188 (637)
Q Consensus 150 ~~k~~~L~~MGfse-eEas~Ai~r~G~da~i~eLvD~I~A 188 (637)
.+++..|..|||+. +.+..|+.+++-| |+--+|.++.
T Consensus 67 ~~qL~qL~eMGF~d~~~ni~AL~~t~Gd--ve~AVe~L~~ 104 (108)
T 2cwb_A 67 QPQLQQLRDMGIQDDELSLRALQATGGD--IQAALELIFA 104 (108)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTSC--HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHh
Confidence 36778999999976 6888999999865 5555666554
No 387
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=47.55 E-value=23 Score=36.07 Aligned_cols=44 Identities=7% Similarity=0.016 Sum_probs=37.0
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhh
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 549 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~ 549 (637)
+..-+||||=||.|=+++++. .+ ..++++|||+....+.+++..
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~-~~---~~y~a~DId~~~i~~ar~~~~ 147 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER-GI---ASVWGCDIHQGLGDVITPFAR 147 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT-TC---SEEEEEESBHHHHHHHHHHHH
T ss_pred CCCCeEEEecCCccHHHHHhc-cC---CeEEEEeCCHHHHHHHHHHHH
Confidence 446799999999999999988 33 358999999999999998754
No 388
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=47.39 E-value=14 Score=38.10 Aligned_cols=48 Identities=10% Similarity=0.021 Sum_probs=40.4
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhh
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 550 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~ 550 (637)
+..-+||||=||.|=+++.+..+.- -..++++|||+.+..+.+.+...
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p-~a~y~a~DId~~~le~a~~~l~~ 178 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPA-ETVYIASDIDARLVGFVDEALTR 178 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCT-TCEEEEEESBHHHHHHHHHHHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHh
Confidence 3467999999999999999988743 35789999999999999988754
No 389
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=46.95 E-value=1.3e+02 Score=28.19 Aligned_cols=77 Identities=17% Similarity=0.094 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCcccccchhhhHH-HHH
Q 006634 79 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITL-QLL 157 (637)
Q Consensus 79 ~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~~~~~~~e~~d~~~d~d~~~~e~~~e~~~~~~~k~~-~L~ 157 (637)
.....|..-|.+.+.|..|++++.+++-. +.+.-++.-.. +.... .++ .....|+. +|+
T Consensus 88 ~I~~eL~~KGI~~~~I~~al~~~~~~de~-e~a~~l~~Kk~-~~~~~---------------~~~---~~~~~K~~~~L~ 147 (177)
T 3e3v_A 88 VIKLNLSKKGIDDNIAEDALILYTDKLQV-EKGVTLAEKLA-NRYSH---------------DSY---RNKQNKIKQSLL 147 (177)
T ss_dssp HHHHHHHTTTCCHHHHHHHHTTSCHHHHH-HHHHHHHHHHH-HHTTT---------------SCH---HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhCCchhHH-HHHHHHHHHHH-hhccC---------------CCh---HHHHHHHHHHHH
Confidence 44568889999999999999876433322 22222222111 11100 000 11235665 999
Q ss_pred hcCCCHHHHHHHHHhhCC
Q 006634 158 EMGFSENQVSLAIEKFGS 175 (637)
Q Consensus 158 ~MGfseeEas~Ai~r~G~ 175 (637)
.=||+-+.+..||..+..
T Consensus 148 rrGF~~~~I~~vl~~l~~ 165 (177)
T 3e3v_A 148 TKGFSYDIIDTIIQELDL 165 (177)
T ss_dssp HTTCCHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHCcC
Confidence 999999999999987643
No 390
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=45.93 E-value=13 Score=37.66 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=24.7
Q ss_pred hhhHHHHHhcCCCHHHHHHHHHhhCCC
Q 006634 150 MEITLQLLEMGFSENQVSLAIEKFGSK 176 (637)
Q Consensus 150 ~~k~~~L~~MGfseeEas~Ai~r~G~d 176 (637)
.+|+..|+.|||+++.|..|+.++|=|
T Consensus 216 ~~~v~~l~~mgf~~~~~~~al~~~nWd 242 (253)
T 3e46_A 216 TKKIENLCAAGFDRNAVIVALSSKSWD 242 (253)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence 478889999999999999999999876
No 391
>1yf3_A DNA adenine methylase; T4DAM, methyltransferase, transferase-DNA complex; HET: DNA SAH; 2.29A {Enterobacteria phage T4} SCOP: c.66.1.28 PDB: 1yfj_A* 1yfl_A* 1q0s_A* 1q0t_A*
Probab=45.60 E-value=6.2 Score=39.50 Aligned_cols=48 Identities=25% Similarity=0.306 Sum_probs=34.4
Q ss_pred hccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHH
Q 006634 494 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW 547 (637)
Q Consensus 494 lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~ 547 (637)
+..+.+++|..-+.++.|+|.|+....+. .+ ++.+|+|+.....|+..
T Consensus 15 ~~~i~~~lP~~~~yvEpF~GggaV~~~~~-----~~-~viNDin~~li~~~~~i 62 (259)
T 1yf3_A 15 LPELKSHFPKYNRFVDLFCGGLSVSLNVN-----GP-VLANDIQEPIIEMYKRL 62 (259)
T ss_dssp HHHHHHTCCCCSEEEETTCTTCTTGGGSC-----SS-EEEECSCHHHHHHHHHH
T ss_pred HHHHHHhCcccCeEEEecCCccHHHHhcc-----cc-EEEecCChHHHHHHHHH
Confidence 33445556655689999999998855432 25 78899999988877653
No 392
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=45.17 E-value=11 Score=42.86 Aligned_cols=70 Identities=14% Similarity=0.212 Sum_probs=45.7
Q ss_pred CCcccccCCCCChHHHHH----HHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhhc
Q 006634 504 GLTMLSVFSGIGGAEVTL----HRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHK 577 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL----~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g--~l~~~~DI~~Lt~~~Ie~l~~~ 577 (637)
...|+++=||-|-+.... .++|-+++ |+|||.++.|..+++..- .|.-+ ..++.+|+++++.
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vk-VyAVEknp~A~~a~~~v~--~N~~~dkVtVI~gd~eev~L--------- 425 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIK-LYAVEKNPNAVVTLENWQ--FEEWGSQVTVVSSDMREWVA--------- 425 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEE-EEEEESCHHHHHHHHHHH--HHTTGGGEEEEESCTTTCCC---------
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcE-EEEEECCHHHHHHHHHHH--hccCCCeEEEEeCcceeccC---------
Confidence 356899999999874333 34444433 689999999887766432 22222 2257899988863
Q ss_pred cCCccEEE
Q 006634 578 LGSIDFVI 585 (637)
Q Consensus 578 ~g~~DLVI 585 (637)
...+||||
T Consensus 426 PEKVDIIV 433 (637)
T 4gqb_A 426 PEKADIIV 433 (637)
T ss_dssp SSCEEEEE
T ss_pred CcccCEEE
Confidence 23688887
No 393
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=45.05 E-value=89 Score=28.95 Aligned_cols=74 Identities=18% Similarity=0.201 Sum_probs=48.9
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHhCCCCcH--HHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCcccccchhhhH
Q 006634 76 LHIEKRASLLMMNFSVNEVDFALDKLGKDAPV--YELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEIT 153 (637)
Q Consensus 76 ~~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i--~~Lld~I~a~q~~~~~~~e~~d~~~d~d~~~~e~~~e~~~~~~~k~ 153 (637)
+..+++..|...||+++.|..+|++|=+..-+ ...++..+....... .|. .++
T Consensus 33 s~~EL~~KL~~kg~~~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~~~------------------------~G~-~~I 87 (162)
T 3dfg_A 33 SKKELNRKLQARGIEPEAAQAAVERLAGEGWQDDVRFAASVVRNRASSG------------------------YGP-LHI 87 (162)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTT------------------------CCH-HHH
T ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcc------------------------ccH-HHH
Confidence 45567788888899988888888887332211 344454444443211 111 244
Q ss_pred H-HHHhcCCCHHHHHHHHHhhC
Q 006634 154 L-QLLEMGFSENQVSLAIEKFG 174 (637)
Q Consensus 154 ~-~L~~MGfseeEas~Ai~r~G 174 (637)
. .|..-|++.+-+..|++.+.
T Consensus 88 ~~eL~~KGI~~~~I~~al~~~~ 109 (162)
T 3dfg_A 88 RAELGTHGLDSDAVSAAMATFE 109 (162)
T ss_dssp HHHHHHTTCCHHHHHHHHTTCC
T ss_pred HHHHHHcCCCHHHHHHHHHhCc
Confidence 4 88899999999999999874
No 394
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=44.63 E-value=50 Score=32.06 Aligned_cols=59 Identities=27% Similarity=0.363 Sum_probs=39.3
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCC--CC-Ccccccccccc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ--TG-ELVQIEDIQAL 566 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~--~g-~l~~~~DI~~L 566 (637)
+.-+||++=| |.-++-|-++ | ..|++||+|+.-....+.||...+. .. ..++.+|+.+.
T Consensus 30 ~a~~VLEiGt--GySTl~lA~~~~---g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~ 92 (202)
T 3cvo_A 30 EAEVILEYGS--GGSTVVAAELPG---KHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPT 92 (202)
T ss_dssp HCSEEEEESC--SHHHHHHHTSTT---CEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSB
T ss_pred CCCEEEEECc--hHHHHHHHHcCC---CEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhh
Confidence 3457888755 5555555554 3 3578999999999999999987643 22 22456786543
No 395
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=44.49 E-value=15 Score=35.92 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=27.7
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhh-CCCCChhhhhh
Q 006634 151 EITLQLLEMGFSENQVSLAIEKF-GSKTPISELAD 184 (637)
Q Consensus 151 ~k~~~L~~MGfseeEas~Ai~r~-G~da~i~eLvD 184 (637)
|-...|+.+||++.||..|+.++ .++.++++|+-
T Consensus 162 ea~~AL~~LGy~~~ea~~av~~~~~~~~~~e~lir 196 (203)
T 1cuk_A 162 EAVARLVALGYKPQEASRMVSKIARPDASSETLIR 196 (203)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHSCCSSCCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcccCCCHHHHHH
Confidence 55569999999999999999998 55667777653
No 396
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=44.12 E-value=20 Score=29.85 Aligned_cols=28 Identities=14% Similarity=0.340 Sum_probs=24.9
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhhCCCCC
Q 006634 151 EITLQLLEMGFSENQVSLAIEKFGSKTP 178 (637)
Q Consensus 151 ~k~~~L~~MGfseeEas~Ai~r~G~da~ 178 (637)
.|+.+|..-|-+++|+..|+.|.|..++
T Consensus 37 ~K~~FL~sKGLt~eEI~~Al~ra~~~~~ 64 (70)
T 2w84_A 37 TRRAFLKKKGLTDEEIDMAFQQSGTAAD 64 (70)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHccCCCC
Confidence 5777999999999999999999998653
No 397
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=43.96 E-value=4.8 Score=39.77 Aligned_cols=37 Identities=16% Similarity=0.044 Sum_probs=0.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 006634 78 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA 116 (637)
Q Consensus 78 ~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a 116 (637)
++++..|+.|||.++.|..|+..+|-+- +.-+|.|+.
T Consensus 178 ~~~v~~~~~mgf~~~~~~~al~~~~~~~--~~~~~~l~~ 214 (216)
T 2pwq_A 178 EVIIKKITEMGFSEDQAKNALIKANWNE--TLALNTLLE 214 (216)
T ss_dssp ---------------------------------------
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHcCCch--HHHHHHHhc
Confidence 5688999999999999999999999875 455565553
No 398
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=43.56 E-value=48 Score=35.47 Aligned_cols=85 Identities=21% Similarity=0.184 Sum_probs=49.7
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCC-----C---CCccccccccccChhhHHHhh
Q 006634 504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-----T---GELVQIEDIQALTTKKFESLI 575 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~-----~---g~l~~~~DI~~Lt~~~Ie~l~ 575 (637)
.-+||=+=.|.||.-..+.+... +.+..||||+...++.+.|+...+. + ...++.+|-.. .|+...
T Consensus 206 pkrVLIIGgGdG~~~revlkh~~--~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~----fl~~~~ 279 (381)
T 3c6k_A 206 GKDVLILGGGDGGILCEIVKLKP--KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIP----VLKRYA 279 (381)
T ss_dssp TCEEEEEECTTCHHHHHHHTTCC--SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHH----HHHHHH
T ss_pred CCeEEEECCCcHHHHHHHHhcCC--ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHH----HHHhhh
Confidence 34677776777777666666543 5688999999999999988753211 0 01123344332 122222
Q ss_pred hccCCccEEEEcCCCCCcC
Q 006634 576 HKLGSIDFVICQNSVPQIP 594 (637)
Q Consensus 576 ~~~g~~DLVIGGpPCQ~FS 594 (637)
...+.+|+||.=.+-.+.+
T Consensus 280 ~~~~~yDvIIvDl~D~~~s 298 (381)
T 3c6k_A 280 KEGREFDYVINDLTAVPIS 298 (381)
T ss_dssp HHTCCEEEEEEECCSSCCC
T ss_pred hccCceeEEEECCCCCccc
Confidence 2335799999876543333
No 399
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=43.41 E-value=53 Score=32.36 Aligned_cols=81 Identities=22% Similarity=0.237 Sum_probs=47.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHhCC--CCc---HHHHHHHHH-Hhhhccc--------ccccCCCCCCCCCCCCCCCCc
Q 006634 78 IEKRASLLMMNFSVNEVDFALDKLGK--DAP---VYELVDFIT-AAQISEN--------FEKETDDAPHDNDGTNEDKSD 143 (637)
Q Consensus 78 ~~~~~~lv~MGF~~eeV~~AI~~~G~--da~---i~~Lld~I~-a~q~~~~--------~~~e~~d~~~d~d~~~~e~~~ 143 (637)
..++.+|...|++.++|.+++.+|-. ..+ +..-++++- .....++ .+.--. .+.
T Consensus 77 ~p~v~~L~~~Gls~~~i~~~l~~~P~lL~~s~~~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~------------~s~ 144 (270)
T 3m66_A 77 KTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLT------------GSL 144 (270)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGT------------SCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCHHHcCCHHHHHHHHHHHHHHhCCCHHHHHHHHHhCCccee------------ech
Confidence 34677899999999999999998854 112 344455552 2222111 000000 001
Q ss_pred ccccchhhhHHHH-HhcCCCHHHHHHHHHhh
Q 006634 144 ETLYGTMEITLQL-LEMGFSENQVSLAIEKF 173 (637)
Q Consensus 144 e~~~~~~~k~~~L-~~MGfseeEas~Ai~r~ 173 (637)
|. ...++..| ..|||+++|+..++-+|
T Consensus 145 e~---~~~~v~~l~~~~G~s~~ei~~~v~~~ 172 (270)
T 3m66_A 145 EP---VKENMKVYRLELGFKHNEIQHMITRI 172 (270)
T ss_dssp HH---HHHHHHHHHHTSCCCHHHHHHHHHHC
T ss_pred HH---HHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 11 12344444 59999999999998887
No 400
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=42.85 E-value=22 Score=28.22 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=24.2
Q ss_pred chhhHHHHHHHhcCCCHHHHHHHHHHh
Q 006634 75 GLHIEKRASLLMMNFSVNEVDFALDKL 101 (637)
Q Consensus 75 s~~~~~~~~lv~MGF~~eeV~~AI~~~ 101 (637)
+.-++++.+|..-|.+.+||..|++|+
T Consensus 28 sp~~~K~~FL~sKGLt~~EI~~Al~rs 54 (54)
T 3ff5_A 28 SPLATRRAFLKKKGLTDEEIDLAFQQS 54 (54)
T ss_dssp SCHHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 457789999999999999999999874
No 401
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=41.90 E-value=34 Score=33.32 Aligned_cols=66 Identities=23% Similarity=0.225 Sum_probs=38.9
Q ss_pred HHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHh----hhccCCccEEEEc
Q 006634 517 AEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL----IHKLGSIDFVICQ 587 (637)
Q Consensus 517 lslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l----~~~~g~~DLVIGG 587 (637)
....|.+.|.+ |+.++.++...+.+..-....+....+.+..||++- +.+..+ ...+|.+|+++-.
T Consensus 24 iA~~la~~Ga~---Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~--~~v~~~~~~~~~~~G~iD~lvnn 93 (256)
T 4fs3_A 24 VAKVLDQLGAK---LVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSD--EEVINGFEQIGKDVGNIDGVYHS 93 (256)
T ss_dssp HHHHHHHTTCE---EEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCH--HHHHHHHHHHHHHHCCCSEEEEC
T ss_pred HHHHHHHCCCE---EEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCH--HHHHHHHHHHHHHhCCCCEEEec
Confidence 35567789985 455677766555444433333333344556788753 334333 3467999999843
No 402
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=41.83 E-value=30 Score=35.65 Aligned_cols=16 Identities=19% Similarity=0.443 Sum_probs=12.4
Q ss_pred hcCCCHHHHHHHHHhh
Q 006634 158 EMGFSENQVSLAIEKF 173 (637)
Q Consensus 158 ~MGfseeEas~Ai~r~ 173 (637)
.+||+++|+..+|-+|
T Consensus 249 ~lG~s~~ev~~~v~~~ 264 (343)
T 3mva_O 249 SLGCTEEEVQKFVLSY 264 (343)
T ss_dssp TTTCCHHHHHHHHHTC
T ss_pred HcCCCHHHHHHHHHhC
Confidence 6888888888777765
No 403
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=40.02 E-value=26 Score=34.99 Aligned_cols=77 Identities=9% Similarity=0.024 Sum_probs=45.7
Q ss_pred CcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCccE
Q 006634 505 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSIDF 583 (637)
Q Consensus 505 l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 583 (637)
.+|||+-||.|.+...+.+..-.. .++++|+ +......+..+...+. ....+..+|+.+ . + .+.+|+
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~---~------~~~~D~ 236 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSA-RGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-E---V------PSNGDI 236 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTC-EEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-C---C------CSSCSE
T ss_pred CEEEEeCCCchHHHHHHHHHCCCC-EEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-C---C------CCCCCE
Confidence 799999999999999988763122 3678999 7666655554332110 011234455543 1 1 135788
Q ss_pred EEEcCCCCCc
Q 006634 584 VICQNSVPQI 593 (637)
Q Consensus 584 VIGGpPCQ~F 593 (637)
|+.......+
T Consensus 237 v~~~~vl~~~ 246 (334)
T 2ip2_A 237 YLLSRIIGDL 246 (334)
T ss_dssp EEEESCGGGC
T ss_pred EEEchhccCC
Confidence 8765554434
No 404
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=39.99 E-value=14 Score=36.29 Aligned_cols=44 Identities=23% Similarity=0.287 Sum_probs=32.2
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHh
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 548 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~ 548 (637)
.+.+||||=||.|.+..-+.+.+. .-|+++|+++.+....+.+.
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~--~~v~gvD~s~~~l~~a~~~~ 114 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHF--EDITMTDFLEVNRQELGRWL 114 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGC--SEEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCC--CeEEEeCCCHHHHHHHHHHH
Confidence 467899999999995543333222 25789999999988877754
No 405
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=37.35 E-value=43 Score=33.64 Aligned_cols=82 Identities=13% Similarity=0.111 Sum_probs=49.0
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 581 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 581 (637)
.+.+|||+=||.|.+...+.+..-.. .++.+|+ +......+.+....+... ..+..+|+.+... . ..+++
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~--~~~~~ 249 (352)
T 3mcz_A 179 RARTVIDLAGGHGTYLAQVLRRHPQL-TGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARN-----F--EGGAA 249 (352)
T ss_dssp TCCEEEEETCTTCHHHHHHHHHCTTC-EEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGG-----G--TTCCE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCC-eEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcc-----c--CCCCc
Confidence 36899999999999999998874333 3567899 655555555443322111 2234566654321 0 11358
Q ss_pred cEEEEcCCCCCc
Q 006634 582 DFVICQNSVPQI 593 (637)
Q Consensus 582 DLVIGGpPCQ~F 593 (637)
|+|+...-...+
T Consensus 250 D~v~~~~vlh~~ 261 (352)
T 3mcz_A 250 DVVMLNDCLHYF 261 (352)
T ss_dssp EEEEEESCGGGS
T ss_pred cEEEEecccccC
Confidence 888875544433
No 406
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=36.79 E-value=7.3 Score=37.81 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=0.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHh---CCCCcHHHHH
Q 006634 78 IEKRASLLMMNFSVNEVDFALDKL---GKDAPVYELV 111 (637)
Q Consensus 78 ~~~~~~lv~MGF~~eeV~~AI~~~---G~da~i~~Ll 111 (637)
++.++.|+.+||++.++.+|++++ .++.++++|+
T Consensus 147 ~ea~~AL~~LGy~~~ea~~av~~~~~~~~~~~~e~li 183 (191)
T 1ixr_A 147 EEAVMALAALGFKEAQARAVVLDLLAQNPKARAQDLI 183 (191)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 467889999999999999999988 3344444444
No 407
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=35.92 E-value=27 Score=34.45 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=28.0
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhh---CCCCChhhhhhh
Q 006634 151 EITLQLLEMGFSENQVSLAIEKF---GSKTPISELADK 185 (637)
Q Consensus 151 ~k~~~L~~MGfseeEas~Ai~r~---G~da~i~eLvD~ 185 (637)
|-...|+.+||++.||..|+.++ .++.++++|+-.
T Consensus 166 ea~~AL~~LGy~~~ea~~av~~~~~~~~~~~~e~lir~ 203 (212)
T 2ztd_A 166 PVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALRS 203 (212)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 45569999999999999999998 456677776543
No 408
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=32.23 E-value=25 Score=33.96 Aligned_cols=73 Identities=22% Similarity=0.227 Sum_probs=45.0
Q ss_pred CCcccccCCCCChHHHHHHHc----CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 006634 504 GLTMLSVFSGIGGAEVTLHRL----GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 579 (637)
Q Consensus 504 ~l~vLsLFSGiGGlslGL~~a----Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g 579 (637)
+-+|||+=||.|+.+..|.+. +-. ..|++||+++...+..+. . .....++.+|+.++.. +.. . ...
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~-~~V~gvD~s~~~l~~a~~----~-~~~v~~~~gD~~~~~~--l~~-~-~~~ 151 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGID-CQVIGIDRDLSRCQIPAS----D-MENITLHQGDCSDLTT--FEH-L-REM 151 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCC-CEEEEEESCCTTCCCCGG----G-CTTEEEEECCSSCSGG--GGG-G-SSS
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCC-CEEEEEeCChHHHHHHhc----c-CCceEEEECcchhHHH--HHh-h-ccC
Confidence 358999999999999998876 211 247899999986443321 1 1123356788876421 110 0 112
Q ss_pred CccEEEE
Q 006634 580 SIDFVIC 586 (637)
Q Consensus 580 ~~DLVIG 586 (637)
.||+|+-
T Consensus 152 ~fD~I~~ 158 (236)
T 2bm8_A 152 AHPLIFI 158 (236)
T ss_dssp CSSEEEE
T ss_pred CCCEEEE
Confidence 5898874
No 409
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=32.14 E-value=34 Score=32.36 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=23.6
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHhCCCC
Q 006634 77 HIEKRASLLMMNFSVNEVDFALDKLGKDA 105 (637)
Q Consensus 77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da 105 (637)
..+...+|+.=||+.+.|..||+++..+.
T Consensus 139 ~~K~~~~L~rrGF~~~~I~~vl~~l~~~~ 167 (177)
T 3e3v_A 139 QNKIKQSLLTKGFSYDIIDTIIQELDLIF 167 (177)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCcCCC
Confidence 45667799999999999999999875544
No 410
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=31.56 E-value=48 Score=32.97 Aligned_cols=63 Identities=16% Similarity=0.141 Sum_probs=37.9
Q ss_pred HHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhh----hccCCccEEEE
Q 006634 518 EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI----HKLGSIDFVIC 586 (637)
Q Consensus 518 slGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~----~~~g~~DLVIG 586 (637)
...|.+.|.+ |+.++.++...+....-....+ ...+.+..||++- +.++.++ .++|.+|+++-
T Consensus 24 A~~la~~Ga~---Vv~~~~~~~~~~~~~~~i~~~g-~~~~~~~~Dvt~~--~~v~~~~~~~~~~~G~iDiLVN 90 (254)
T 4fn4_A 24 AKKFALNDSI---VVAVELLEDRLNQIVQELRGMG-KEVLGVKADVSKK--KDVEEFVRRTFETYSRIDVLCN 90 (254)
T ss_dssp HHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTSH--HHHHHHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHcCCE---EEEEECCHHHHHHHHHHHHhcC-CcEEEEEccCCCH--HHHHHHHHHHHHHcCCCCEEEE
Confidence 4567789974 4568888876554433332222 2233456788754 3444433 46799999984
No 411
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=30.97 E-value=41 Score=33.39 Aligned_cols=60 Identities=17% Similarity=0.210 Sum_probs=37.0
Q ss_pred HHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHh----hhccCCccEEEEc
Q 006634 518 EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL----IHKLGSIDFVICQ 587 (637)
Q Consensus 518 slGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l----~~~~g~~DLVIGG 587 (637)
...|.+.|.+ |+.+++++.....+.. .......+..||++- +.++.+ ..++|.+|++|-.
T Consensus 19 a~~la~~Ga~---V~~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~--~~v~~~v~~~~~~~g~iDiLVNN 82 (247)
T 3ged_A 19 CLDFLEAGDK---VCFIDIDEKRSADFAK-----ERPNLFYFHGDVADP--LTLKKFVEYAMEKLQRIDVLVNN 82 (247)
T ss_dssp HHHHHHTTCE---EEEEESCHHHHHHHHT-----TCTTEEEEECCTTSH--HHHHHHHHHHHHHHSCCCEEEEC
T ss_pred HHHHHHCCCE---EEEEeCCHHHHHHHHH-----hcCCEEEEEecCCCH--HHHHHHHHHHHHHcCCCCEEEEC
Confidence 5667889985 4567888776544332 122333456788753 334443 3467999999953
No 412
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=30.90 E-value=26 Score=34.21 Aligned_cols=31 Identities=13% Similarity=0.114 Sum_probs=21.9
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHhCCCCc
Q 006634 76 LHIEKRASLLMMNFSVNEVDFALDKLGKDAP 106 (637)
Q Consensus 76 ~~~~~~~~lv~MGF~~eeV~~AI~~~G~da~ 106 (637)
...+...+|..=||+.+.|..|++++..+..
T Consensus 181 ~k~K~~~~L~rrGFs~~~I~~vl~~~~~~~~ 211 (221)
T 3d5l_A 181 REQKVQQGLTTKGFSSSVYEMIKDEVVPQPD 211 (221)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHTTC------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhccchhh
Confidence 3567778999999999999999987755443
No 413
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=30.71 E-value=51 Score=28.89 Aligned_cols=31 Identities=32% Similarity=0.652 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHHHH----hCCC--CHHHHHHHHHHHh
Q 006634 1 MGFSPSLVDKVIEE----KGQD--NVDLLLETLIEYN 31 (637)
Q Consensus 1 MGF~~e~V~KaI~e----~Ge~--~~d~iLE~Lltys 31 (637)
|||+...|.++++. +|.. ..+.|+..||.-.
T Consensus 37 mGf~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll~~~ 73 (104)
T 2kna_A 37 MGFSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNAQ 73 (104)
T ss_dssp TTCCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 99999999999887 4654 6889999988654
No 414
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=30.19 E-value=36 Score=26.98 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=21.2
Q ss_pred hhhHHHHHhcCCCHHHHHHHHHhh
Q 006634 150 MEITLQLLEMGFSENQVSLAIEKF 173 (637)
Q Consensus 150 ~~k~~~L~~MGfseeEas~Ai~r~ 173 (637)
..|+.+|..-|-+++|+..|+.|+
T Consensus 31 ~~K~~FL~sKGLt~~EI~~Al~rs 54 (54)
T 3ff5_A 31 ATRRAFLKKKGLTDEEIDLAFQQS 54 (54)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHcC
Confidence 367779999999999999999885
No 415
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.46 E-value=60 Score=29.92 Aligned_cols=26 Identities=8% Similarity=0.172 Sum_probs=20.0
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHh
Q 006634 76 LHIEKRASLLMMNFSVNEVDFALDKL 101 (637)
Q Consensus 76 ~~~~~~~~lv~MGF~~eeV~~AI~~~ 101 (637)
...+.+.+|+.=||+.+.|..||+++
T Consensus 132 ~~~K~~~~L~rrGF~~~~i~~~l~~~ 157 (159)
T 3c1d_A 132 EKVKIQRFLLYRGYLMEDIQDIWRNF 157 (159)
T ss_dssp HHHHHHHHHHHTTCCHHHHTTCC---
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHhc
Confidence 46677889999999999998887654
No 416
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...
Probab=28.70 E-value=1.4e+02 Score=29.00 Aligned_cols=97 Identities=18% Similarity=0.233 Sum_probs=40.9
Q ss_pred hhhcccchhhhhccccccCC----CCCcccccCCCCChHHH----HHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC
Q 006634 483 HCFQTDTLGYHLSVLKSMFP----GGLTMLSVFSGIGGAEV----TLHRLGIKLKGVISIETSETNRRILKRWWESSGQT 554 (637)
Q Consensus 483 nsfqvdtv~~~lsvLK~~f~----~~l~vLsLFSGiGGlsl----GL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~ 554 (637)
+.|+.+-..+|...+++.+. .+.++ =+.-|.||+-. .|.+.|.+ |+.+..++.....+.......+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~v-lITGasggIG~~la~~l~~~G~~---V~~~~r~~~~~~~~~~~~~~~~~~ 78 (286)
T 1xu9_A 3 HQHQHQHQHQHQQPLNEEFRPEMLQGKKV-IVTGASKGIGREMAYHLAKMGAH---VVVTARSKETLQKVVSHCLELGAA 78 (286)
T ss_dssp ------------CCCSSCCCGGGGTTCEE-EESSCSSHHHHHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHHTCS
T ss_pred chhhccchhhhccccccCCChhhcCCCEE-EEeCCCcHHHHHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHHhCCC
Confidence 34544444555555554432 12223 23444455433 35577874 455677765443332211111111
Q ss_pred CCccccccccccChhhHHHhh----hccCCccEEE
Q 006634 555 GELVQIEDIQALTTKKFESLI----HKLGSIDFVI 585 (637)
Q Consensus 555 g~l~~~~DI~~Lt~~~Ie~l~----~~~g~~DLVI 585 (637)
...++..|+.+. +.+..++ ..+|++|+||
T Consensus 79 ~~~~~~~Dl~d~--~~v~~~~~~~~~~~g~iD~li 111 (286)
T 1xu9_A 79 SAHYIAGTMEDM--TFAEQFVAQAGKLMGGLDMLI 111 (286)
T ss_dssp EEEEEECCTTCH--HHHHHHHHHHHHHHTSCSEEE
T ss_pred ceEEEeCCCCCH--HHHHHHHHHHHHHcCCCCEEE
Confidence 123455788753 2333332 3468999998
No 417
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=28.44 E-value=1.2e+02 Score=29.69 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=30.6
Q ss_pred CCCcccccCCCCChHHHHH----HHcCCcee-eEEEeecCHHHHHHHHHHh
Q 006634 503 GGLTMLSVFSGIGGAEVTL----HRLGIKLK-GVISIETSETNRRILKRWW 548 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL----~~aGi~~k-~vvaVEid~~a~~t~r~~~ 548 (637)
.+.+|||+=||.|.++..+ ...+-.+. .++++|+++......+...
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~ 102 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELV 102 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHH
Confidence 4579999999999876532 22111122 2489999999888776654
No 418
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=27.85 E-value=39 Score=32.01 Aligned_cols=40 Identities=8% Similarity=0.025 Sum_probs=30.7
Q ss_pred cCCCCCcccccCCCCC-hHHHHHHH-cCCceeeEEEeecCHHHHH
Q 006634 500 MFPGGLTMLSVFSGIG-GAEVTLHR-LGIKLKGVISIETSETNRR 542 (637)
Q Consensus 500 ~f~~~l~vLsLFSGiG-GlslGL~~-aGi~~k~vvaVEid~~a~~ 542 (637)
.+..+-+||++=||-| -.+.-|.+ .|+. |+++||++.+..
T Consensus 32 ~~~~~~rVlEVG~G~g~~vA~~La~~~g~~---V~atDInp~Av~ 73 (153)
T 2k4m_A 32 CSGPGTRVVEVGAGRFLYVSDYIRKHSKVD---LVLTDIKPSHGG 73 (153)
T ss_dssp HSCSSSEEEEETCTTCCHHHHHHHHHSCCE---EEEECSSCSSTT
T ss_pred cCCCCCcEEEEccCCChHHHHHHHHhCCCe---EEEEECCccccc
Confidence 3445679999988888 47777876 9985 688999988743
No 419
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=27.75 E-value=1e+02 Score=31.48 Aligned_cols=82 Identities=13% Similarity=0.085 Sum_probs=51.6
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccC
Q 006634 501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLG 579 (637)
Q Consensus 501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g 579 (637)
++...+|||+=||.|.+...+.+..-.. .++.+|+ +......+.++...+... ..+..+|+.+ . + ..
T Consensus 200 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~--~--~------p~ 267 (369)
T 3gwz_A 200 FSGAATAVDIGGGRGSLMAAVLDAFPGL-RGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE--T--I------PD 267 (369)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT--C--C------CS
T ss_pred CccCcEEEEeCCCccHHHHHHHHHCCCC-eEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC--C--C------CC
Confidence 3456899999999999999998874333 3578999 877766666554332111 2234555541 1 1 12
Q ss_pred CccEEEEcCCCCCcC
Q 006634 580 SIDFVICQNSVPQIP 594 (637)
Q Consensus 580 ~~DLVIGGpPCQ~FS 594 (637)
++|+|+...-...++
T Consensus 268 ~~D~v~~~~vlh~~~ 282 (369)
T 3gwz_A 268 GADVYLIKHVLHDWD 282 (369)
T ss_dssp SCSEEEEESCGGGSC
T ss_pred CceEEEhhhhhccCC
Confidence 588888766555554
No 420
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=27.28 E-value=46 Score=32.83 Aligned_cols=41 Identities=15% Similarity=0.302 Sum_probs=27.7
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHH----hCCC--CcHHHHHHHHHH
Q 006634 76 LHIEKRASLLMMNFSVNEVDFALDK----LGKD--APVYELVDFITA 116 (637)
Q Consensus 76 ~~~~~~~~lv~MGF~~eeV~~AI~~----~G~d--a~i~~Lld~I~a 116 (637)
.++..+++|.+||++...+.+...- ++-+ ..+...++||..
T Consensus 4 ~~s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~ 50 (270)
T 3m66_A 4 DHSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKD 50 (270)
T ss_dssp HHHHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHH
T ss_pred cchHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHH
Confidence 3678899999999999999766544 2333 234555555544
No 421
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=24.63 E-value=2e+02 Score=28.59 Aligned_cols=47 Identities=15% Similarity=0.077 Sum_probs=34.5
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhh
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 550 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~ 550 (637)
....+|||+=||.|.+...+.+..-.. .++.+|+ +......+.+...
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~ 214 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLTAHEDL-SGTVLDL-QGPASAAHRRFLD 214 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-HHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCChhHHHHHHHHHCCCC-eEEEecC-HHHHHHHHHhhhh
Confidence 446799999999999999987754333 3567899 8777766665543
No 422
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=23.87 E-value=82 Score=31.31 Aligned_cols=64 Identities=16% Similarity=-0.008 Sum_probs=36.7
Q ss_pred HHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHh----hhccCCccEEEEc
Q 006634 518 EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL----IHKLGSIDFVICQ 587 (637)
Q Consensus 518 slGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l----~~~~g~~DLVIGG 587 (637)
...|-+.|.+ |+.++.++........-....+ ...+.+..||++- +.++.+ ..++|.+|++|-.
T Consensus 26 a~~la~~Ga~---Vvi~~~~~~~~~~~~~~l~~~g-~~~~~~~~Dv~~~--~~v~~~~~~~~~~~G~iDiLVNN 93 (255)
T 4g81_D 26 AEGLAAAGAR---VILNDIRATLLAESVDTLTRKG-YDAHGVAFDVTDE--LAIEAAFSKLDAEGIHVDILINN 93 (255)
T ss_dssp HHHHHHTTCE---EEECCSCHHHHHHHHHHHHHTT-CCEEECCCCTTCH--HHHHHHHHHHHHTTCCCCEEEEC
T ss_pred HHHHHHCCCE---EEEEECCHHHHHHHHHHHHhcC-CcEEEEEeeCCCH--HHHHHHHHHHHHHCCCCcEEEEC
Confidence 4567789985 4567888765432222222222 2233456788754 344433 3467999999954
No 423
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=22.68 E-value=18 Score=35.03 Aligned_cols=33 Identities=24% Similarity=0.418 Sum_probs=0.0
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhh---CCCCChhhhh
Q 006634 151 EITLQLLEMGFSENQVSLAIEKF---GSKTPISELA 183 (637)
Q Consensus 151 ~k~~~L~~MGfseeEas~Ai~r~---G~da~i~eLv 183 (637)
|-...|+.+||++.||..|+.++ .++.++++|+
T Consensus 148 ea~~AL~~LGy~~~ea~~av~~~~~~~~~~~~e~li 183 (191)
T 1ixr_A 148 EAVMALAALGFKEAQARAVVLDLLAQNPKARAQDLI 183 (191)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 34459999999999999999987 3345555543
No 424
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=22.41 E-value=45 Score=33.13 Aligned_cols=57 Identities=14% Similarity=0.280 Sum_probs=36.7
Q ss_pred HHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEEE
Q 006634 518 EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVIC 586 (637)
Q Consensus 518 slGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIG 586 (637)
...|.+.|.+ |+.++.++.... ............||++ .+.+++++.++|.+|+++-
T Consensus 28 a~~la~~Ga~---Vv~~~~~~~~~~-------~~~~~~~~~~~~Dv~~--~~~v~~~~~~~g~iDiLVN 84 (242)
T 4b79_A 28 AMQFAELGAE---VVALGLDADGVH-------APRHPRIRREELDITD--SQRLQRLFEALPRLDVLVN 84 (242)
T ss_dssp HHHHHHTTCE---EEEEESSTTSTT-------SCCCTTEEEEECCTTC--HHHHHHHHHHCSCCSEEEE
T ss_pred HHHHHHCCCE---EEEEeCCHHHHh-------hhhcCCeEEEEecCCC--HHHHHHHHHhcCCCCEEEE
Confidence 5667899985 455677765321 1112222345678875 5668888888999999984
No 425
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=22.29 E-value=1.8e+02 Score=29.57 Aligned_cols=81 Identities=7% Similarity=0.014 Sum_probs=48.3
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccC-hhhHHHhhhccCC
Q 006634 503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALT-TKKFESLIHKLGS 580 (637)
Q Consensus 503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt-~~~Ie~l~~~~g~ 580 (637)
..-+|||+=||.|.+...+.+..-.. .++.+|+ +......+......+.. ...++.+|+.+.. + + .+.
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~------p~~ 248 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEV-EVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVP--F------PTG 248 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTC-EEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCC--C------CCC
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCC-EEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCC--C------CCC
Confidence 45689999999999999998753222 3678999 77666666554322111 1123456665421 0 0 135
Q ss_pred ccEEEEcCCCCCc
Q 006634 581 IDFVICQNSVPQI 593 (637)
Q Consensus 581 ~DLVIGGpPCQ~F 593 (637)
+|+|+-..-...+
T Consensus 249 ~D~v~~~~vlh~~ 261 (363)
T 3dp7_A 249 FDAVWMSQFLDCF 261 (363)
T ss_dssp CSEEEEESCSTTS
T ss_pred cCEEEEechhhhC
Confidence 7777765544444
No 426
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=22.24 E-value=1.2e+02 Score=31.14 Aligned_cols=80 Identities=11% Similarity=0.143 Sum_probs=51.1
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhc-----CCCCCccccccccccChhhHHHhhh
Q 006634 502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS-----GQTGELVQIEDIQALTTKKFESLIH 576 (637)
Q Consensus 502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~t-----n~~g~l~~~~DI~~Lt~~~Ie~l~~ 576 (637)
|+.-+||=|=.|.||....+.+.- .++-+..||||+...++.+.|+... +.+...++.+|-.+.-. .
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~-~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~-------~ 153 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVN-------Q 153 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTS-------C
T ss_pred CCCCeEEEECCCchHHHHHHHHcC-CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHh-------h
Confidence 556678777667777665555431 2356788999999999999887532 12233355677654321 1
Q ss_pred ccCCccEEEEcCC
Q 006634 577 KLGSIDFVICQNS 589 (637)
Q Consensus 577 ~~g~~DLVIGGpP 589 (637)
....+|+||--.+
T Consensus 154 ~~~~yDvIi~D~~ 166 (294)
T 3o4f_A 154 TSQTFDVIISDCT 166 (294)
T ss_dssp SSCCEEEEEESCC
T ss_pred ccccCCEEEEeCC
Confidence 2357999997654
No 427
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=20.85 E-value=1.4e+02 Score=28.53 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=35.6
Q ss_pred HHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhh----hccCCccEEEEcC
Q 006634 517 AEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI----HKLGSIDFVICQN 588 (637)
Q Consensus 517 lslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~----~~~g~~DLVIGGp 588 (637)
+...|.+.|.+ |+.+..+......++..-...+.....++..|+++.. .+..++ ..++.+|+||-..
T Consensus 25 ia~~l~~~G~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--~v~~~~~~~~~~~g~id~li~~A 95 (266)
T 3oig_A 25 IARSLHEAGAR---LIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDA--EIETCFASIKEQVGVIHGIAHCI 95 (266)
T ss_dssp HHHHHHHTTCE---EEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSH--HHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHCCCE---EEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHH--HHHHHHHHHHHHhCCeeEEEEcc
Confidence 34556788985 3445555543333433222221112334567887643 344333 3568999999654
Done!