BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006635
(637 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides
Thetaiotaomicron
Length = 612
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 111/327 (33%), Positives = 153/327 (46%), Gaps = 25/327 (7%)
Query: 28 TVTYDRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPS 87
T + L+NG+ ++ + IHYPR E WE I+ K G + I YVFWN HEP
Sbjct: 7 TFEVGKNTFLLNGEPFVVKAAEIHYPRIPKEYWEHRIKXCKALGXNTICLYVFWNFHEPE 66
Query: 88 PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNG 147
G Y+F G D+ F + Q G Y +R GPYVCAEW GG P WL I R +
Sbjct: 67 EGRYDFAGQKDIAAFCRLAQENGXYVIVRPGPYVCAEWEXGGLPWWLLKKKDIKLREQDP 126
Query: 148 PFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKM 207
+ ++ F ++ + + + L S+GG II Q+ENEYG + G +
Sbjct: 127 YYXERVKLFLNEVGKQLAD--LQISKGGNIIXVQVENEYG----AFGIDKPYISEIRDXV 180
Query: 208 AVGLDTGVPWVMCK-----EDDAPDPV---INSCNGFYCDA----FSPNKPYKPTLWTEA 255
TGVP C E++A D + IN G D +P P +E
Sbjct: 181 KQAGFTGVPLFQCDWNSNFENNALDDLLWTINFGTGANIDEQFKRLKELRPDTPLXCSEF 240
Query: 256 WSGWFTEFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPF-----I 310
WSGWF +G R ++L + + S F+ Y HGGT+FG G F
Sbjct: 241 WSGWFDHWGAKHETRSAEELVKGXKEXLDRNIS-FSLYXTHGGTSFGHWGGANFPNFSPT 299
Query: 311 TTSYDYDAPLDEYGLMRQPKYGHLKQL 337
TSYDYDAP++E G + PKY ++ L
Sbjct: 300 CTSYDYDAPINESGKV-TPKYLEVRNL 325
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
Length = 654
Score = 159 bits (401), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 114/348 (32%), Positives = 162/348 (46%), Gaps = 34/348 (9%)
Query: 29 VTYDRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSP 88
+ Y R + L +GQ ISGSIHY R W+D + K K GL+ I TYV WN HEP P
Sbjct: 11 IDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWP 70
Query: 89 GHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGP 148
G Y F +D+ F++ +GL LR GPY+CAEW GG P WL I R+ +
Sbjct: 71 GQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGLPAWLLEKESILLRSSDPD 130
Query: 149 FKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKM- 207
+ A+ + ++ MK L GGP+I Q+ENEYG S A Y+ + K
Sbjct: 131 YLAAVDKWLGVLLPKMK--PLLYQNGGPVITVQVENEYG----SYFACDFDYLRFLQKRF 184
Query: 208 --AVGLDTGVPWVMCKEDDAPDPVIN--SCNGFY-----------CDAFSPNK---PYKP 249
+G D V+ D A + + G Y DAF + P P
Sbjct: 185 RHHLGDDV----VLFTTDGAHKTFLKCGALQGLYTTVDFGTGSNITDAFLSQRKCEPKGP 240
Query: 250 TLWTEAWSGWFTEFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFG--RTAGG 307
+ +E ++GW +G + +A ++ + +G S N YM+ GGTNF A
Sbjct: 241 LINSEFYTGWLDHWGQPHSTIKTEAVASSLYDILARGAS-VNLYMFIGGTNFAYWNGANS 299
Query: 308 PFIT--TSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKLCEYALVSSDP 353
P+ TSYDYDAPL E G + + + + + K+ E + S P
Sbjct: 300 PYAAQPTSYDYDAPLSEAGDLTEKYFALRNIIQKFEKVPEGPIPPSTP 347
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
Length = 595
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/324 (31%), Positives = 149/324 (45%), Gaps = 49/324 (15%)
Query: 33 RKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYN 92
R ++G+ ++SG+IHY R PE W + K G + ++TYV WN HEP G ++
Sbjct: 7 RDDFYLDGKSFKILSGAIHYFRVPPEDWYHSLYNLKALGFNTVETYVAWNLHEPCEGEFH 66
Query: 93 FEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVA 152
FEG DL +F++ Q +GLYA +R P++CAEW FGG P WL + R+ + + A
Sbjct: 67 FEGDLDLEKFLQIAQDLGLYAIVRPSPFICAEWEFGGLPAWL-LTKNMRIRSSDPAYIEA 125
Query: 153 MQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGP--ESKSLGAAGHAYVNWAAKMAVG 210
+ + +++ + GG I++ Q+ENEYG E K+ A +
Sbjct: 126 VGRYYDQLLPRLVPRL--LDNGGNILMMQVENEYGSYGEDKAYLRAIRQLMEECGVTCPL 183
Query: 211 LDTGVPW-------VMCKEDDAPDPVINSCNGFYCDAFSPNKPYK--------------- 248
+ PW + +ED F F PY
Sbjct: 184 FTSDGPWRATLKAGTLIEED-----------LFVTGNFGSKAPYNFSQMQEFFDEHGKKW 232
Query: 249 PTLWTEAWSGWFTEFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGG- 307
P + E W GWF + + R ++LA AV +++G N YM+HGGTNFG G
Sbjct: 233 PLMCMEFWDGWFNRWKEPIITRDPKELADAVREVLEQGS--INLYMFHGGTNFGFMNGCS 290
Query: 308 -------PFITTSYDYDAPLDEYG 324
P + TSYDYDA LDE G
Sbjct: 291 ARGTLDLPQV-TSYDYDALLDEEG 313
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 113/372 (30%), Positives = 161/372 (43%), Gaps = 47/372 (12%)
Query: 29 VTYDRKAILINGQRRILISGSIH-YPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPS 87
VT+D +I +NG+R ++ SG +H Y ++ D+ K K G + + YV W E +
Sbjct: 6 VTWDEHSIFVNGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWALLEGN 65
Query: 88 PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNG 147
PGHY+ EG +DL F + G+Y R GPY+ AE + GGFP WL+ V GI RT +
Sbjct: 66 PGHYSAEGIFDLQPFFDAAKEAGIYLLARPGPYINAEVSGGGFPGWLQRVDGI-LRTSDE 124
Query: 148 PFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEY-GPESKSLGAAGHAYVNWAAK 206
+ A + I + ++ + GGPIIL Q ENEY G G +Y+ +
Sbjct: 125 AYLKATDNYASNIAATIAKAQI--TNGGPIILYQPENEYSGACCGYNGFPDGSYMQYIED 182
Query: 207 MAVGLDTGVPWVM----CKEDDAPDPVINSCN---------GFYC--------------- 238
A VP++ +AP + + GF C
Sbjct: 183 HARDAGIVVPFISNDAWAAGHNAPGTGAGAVDIYGHDSYPLGFDCANPSTWPSGNLPTYF 242
Query: 239 ----DAFSPNKPYKPTLWTEAWSGWFTEFGGAVHRRPVQDLAFAVARFIQK-----GGSF 289
+ SP+ PY E G F +GG + L R K G +F
Sbjct: 243 HTSHEQQSPSTPYS---LVEFQGGAFDPWGGVGFAKCAALLNHEFERVFYKNDFSFGVAF 299
Query: 290 FNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKLCEYALV 349
N YM GGTN+G G P TSYDY + + E + + KY LK L K+ LV
Sbjct: 300 LNLYMIFGGTNWGNL-GHPGGYTSYDYGSAISESRNITREKYSELKLLGNFAKVSPGYLV 358
Query: 350 SSDPTVTSLGTY 361
++P S TY
Sbjct: 359 -ANPGDLSTSTY 369
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 101/375 (26%), Positives = 156/375 (41%), Gaps = 46/375 (12%)
Query: 29 VTYDRKAILINGQRRILISGSIHYPR-STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPS 87
VT+D ++ ++G+R ++ SG +H R P ++ D+ K K G + + YV W E
Sbjct: 26 VTWDEHSLFVHGERVVIFSGEVHPFRLPVPSLYLDVFHKIKALGFNTVSFYVDWALLEGK 85
Query: 88 PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNG 147
PG + +G + L F + + G+Y R GPY+ AE + GGFP WL+ V G RTD
Sbjct: 86 PGRFRADGIFSLEPFFEAATKAGIYLLARPGPYINAEVSGGGFPGWLQRVKG-KLRTDAP 144
Query: 148 PFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKM 207
+ A + I ++ ++ + GGP+IL Q ENEY ++ + Y+ +
Sbjct: 145 DYLHATDNYVAHIASIIAKAQI--TNGGPVILYQPENEYSGAAEGVLFPNKPYMQYVIDQ 202
Query: 208 AVGLDTGVPWV--------------------MCKED------DAPDPVINSCNGFYCD-- 239
A VP + + D D P NG
Sbjct: 203 ARNAGIIVPLINNDAFPGGTGAPGTGLGSVDIYGHDGYPLGFDCAHPSAWPDNGLPTTWR 262
Query: 240 ----AFSPNKPYKPTLWTEAWSGWFTEFGGAVHRRPVQDLAFAVARFIQK-----GGSFF 290
SP+ P+ E G F FGG + + R K G + F
Sbjct: 263 QDHLNISPSTPFS---LVEFQGGAFDPFGGWGFEQCSALVNHEFERVFYKNNMAAGVTIF 319
Query: 291 NYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKLCEYALVS 350
N YM GGTN+G G P TSYDY A + E + + KY LK + +K+ ++
Sbjct: 320 NIYMTFGGTNWGNL-GHPGGYTSYDYGASIREDRRIDREKYSELKLQGQFLKVSP-GYIT 377
Query: 351 SDPTVTSLGTYQQAH 365
+ P + G Y +
Sbjct: 378 ATPENATQGVYSDSQ 392
>pdb|2OSY|A Chain A, Endo-Glycoceramidase Ii From Rhodococcus Sp.: Lactosyl-
Enzyme Intermediate
pdb|2OSY|B Chain B, Endo-Glycoceramidase Ii From Rhodococcus Sp.: Lactosyl-
Enzyme Intermediate
Length = 481
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 53 PRSTPEMWE-DLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGL 111
P P+ E DL R+ D G + + + W EP+P G YD + RVG
Sbjct: 60 PDGMPQFTEADLAREYADMGTNFVRFLISWRSVEPAP------GVYDQQYLDRVEDRVGW 113
Query: 112 YAH 114
YA
Sbjct: 114 YAE 116
>pdb|2OSW|A Chain A, Endo-Glycoceramidase Ii From Rhodococcus Sp.
pdb|2OSW|B Chain B, Endo-Glycoceramidase Ii From Rhodococcus Sp.
pdb|2OYK|A Chain A, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
Cellobiose-Like Isofagomine Complex
pdb|2OYK|B Chain B, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
Cellobiose-Like Isofagomine Complex
pdb|2OYL|A Chain A, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
Cellobiose-Like Imidazole Complex
pdb|2OYL|B Chain B, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
Cellobiose-Like Imidazole Complex
pdb|2OYM|A Chain A, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
Five-Membered Iminocyclitol Complex
pdb|2OYM|B Chain B, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
Five-Membered Iminocyclitol Complex
Length = 481
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 53 PRSTPEMWE-DLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGL 111
P P+ E DL R+ D G + + + W EP+P G YD + RVG
Sbjct: 60 PDGMPQFTEADLAREYADMGTNFVRFLISWRSVEPAP------GVYDQQYLDRVEDRVGW 113
Query: 112 YAH 114
YA
Sbjct: 114 YAE 116
>pdb|2OSX|A Chain A, Endo-glycoceramidase Ii From Rhodococcus Sp.: Ganglioside
Gm3 Complex
Length = 481
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 53 PRSTPEMWE-DLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGL 111
P P+ E DL R+ D G + + + W EP+P G YD + RVG
Sbjct: 60 PDGMPQFTEADLAREYADMGTNFVRFLISWRSVEPAP------GVYDQQYLDRVEDRVGW 113
Query: 112 YAH 114
YA
Sbjct: 114 YAE 116
>pdb|1B30|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
1,2- (4-Deoxy-Beta-L-Threo-Hex-4-Enopyranosyluronic
Acid)-Beta- 1,4-Xylotriose)
pdb|1B31|A Chain A, Xylanase From Penicillium Simplicissimum, Native With
Peg200 As Cryoprotectant
pdb|1B3V|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylose
pdb|1B3W|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylobiose
pdb|1B3X|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylotriose
pdb|1B3Y|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylotetraose
pdb|1B3Z|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylopentaose
pdb|1BG4|A Chain A, Xylanase From Penicillium Simplicissimum
Length = 302
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 24/135 (17%)
Query: 81 WNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPG- 139
W+ EP+ G + F GS LV F ++ ++ +R G VW +PG
Sbjct: 52 WDATEPNRGQFTFSGSDYLVNFAQSNGKL-----IR-----------GHTLVWHSQLPGW 95
Query: 140 ISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSL--GAAG 197
+S TD ++ ++ K K++A +L++I NE G S+ G
Sbjct: 96 VSSITDKNTLISVLKNHITTVMTRYKG-KIYAWD----VLNEIFNEDGSLRNSVFYNVIG 150
Query: 198 HAYVNWAAKMAVGLD 212
YV A + A +D
Sbjct: 151 EDYVRIAFETARSVD 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,723,816
Number of Sequences: 62578
Number of extensions: 939269
Number of successful extensions: 2250
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2225
Number of HSP's gapped (non-prelim): 15
length of query: 637
length of database: 14,973,337
effective HSP length: 105
effective length of query: 532
effective length of database: 8,402,647
effective search space: 4470208204
effective search space used: 4470208204
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)