Query 006635
Match_columns 637
No_of_seqs 311 out of 1459
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 12:17:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006635.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006635hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 2E-175 4E-180 1485.1 57.8 619 15-636 16-634 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 3E-153 7E-158 1259.6 32.4 553 26-636 17-571 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 1.3E-89 2.8E-94 726.0 19.6 297 35-340 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 2E-34 4.4E-39 326.0 9.5 290 29-327 1-333 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.8 1.4E-20 3.1E-25 203.7 13.4 265 50-343 2-373 (374)
6 PF02836 Glyco_hydro_2_C: Glyc 99.4 1.6E-11 3.4E-16 129.1 18.6 193 29-262 1-213 (298)
7 PRK10150 beta-D-glucuronidase; 99.2 1.3E-09 2.9E-14 125.4 25.9 160 27-221 276-449 (604)
8 PF02837 Glyco_hydro_2_N: Glyc 99.0 2E-09 4.3E-14 103.3 11.7 104 462-571 59-164 (167)
9 PRK10340 ebgA cryptic beta-D-g 99.0 7.9E-09 1.7E-13 125.3 18.6 258 27-342 318-603 (1021)
10 PRK09525 lacZ beta-D-galactosi 99.0 1.1E-08 2.5E-13 123.8 18.8 150 27-221 334-489 (1027)
11 COG3250 LacZ Beta-galactosidas 99.0 1.3E-08 2.9E-13 119.6 17.8 120 27-188 284-409 (808)
12 PF13364 BetaGal_dom4_5: Beta- 98.9 7.6E-09 1.7E-13 94.1 9.2 86 458-550 22-110 (111)
13 PF00150 Cellulase: Cellulase 98.9 2.9E-08 6.2E-13 101.8 13.9 161 39-221 4-172 (281)
14 PRK10150 beta-D-glucuronidase; 98.2 6.2E-06 1.3E-10 95.3 11.1 103 467-575 61-181 (604)
15 PF03198 Glyco_hydro_72: Gluca 98.2 2.2E-05 4.7E-10 83.0 13.7 157 23-217 5-179 (314)
16 smart00633 Glyco_10 Glycosyl h 98.1 8.6E-06 1.9E-10 84.2 8.5 117 81-222 3-126 (254)
17 PRK10340 ebgA cryptic beta-D-g 98.0 1.9E-05 4.1E-10 96.4 10.3 96 471-575 109-208 (1021)
18 PRK09525 lacZ beta-D-galactosi 98.0 2.8E-05 6E-10 94.9 10.8 96 471-575 120-220 (1027)
19 PLN02705 beta-amylase 98.0 2.2E-05 4.8E-10 88.3 9.0 115 56-182 266-414 (681)
20 PLN02905 beta-amylase 97.9 2.8E-05 6E-10 87.8 9.3 115 56-182 284-432 (702)
21 PLN02801 beta-amylase 97.9 3.1E-05 6.8E-10 85.9 9.2 82 56-141 35-126 (517)
22 PLN00197 beta-amylase; Provisi 97.9 4.1E-05 8.9E-10 85.6 9.2 83 56-142 125-217 (573)
23 PLN02161 beta-amylase 97.9 5.1E-05 1.1E-09 84.2 9.3 83 56-142 115-207 (531)
24 TIGR03356 BGL beta-galactosida 97.9 3.6E-05 7.7E-10 85.6 8.2 97 58-166 54-151 (427)
25 PLN02803 beta-amylase 97.8 5.3E-05 1.1E-09 84.5 9.2 83 56-142 105-197 (548)
26 PF13204 DUF4038: Protein of u 97.7 0.00069 1.5E-08 71.7 15.3 230 33-292 2-280 (289)
27 PF01373 Glyco_hydro_14: Glyco 97.4 0.00013 2.8E-09 79.6 3.8 113 59-182 17-152 (402)
28 COG3693 XynA Beta-1,4-xylanase 97.2 0.0012 2.6E-08 70.0 9.0 133 67-222 55-194 (345)
29 PF00331 Glyco_hydro_10: Glyco 97.1 0.00097 2.1E-08 71.5 6.4 158 45-223 11-180 (320)
30 PF07745 Glyco_hydro_53: Glyco 97.0 0.0015 3.3E-08 70.3 7.4 138 61-222 27-178 (332)
31 PF00232 Glyco_hydro_1: Glycos 97.0 0.00073 1.6E-08 75.8 4.8 97 58-166 58-156 (455)
32 KOG2024 Beta-Glucuronidase GUS 96.9 0.0017 3.7E-08 67.0 5.8 96 466-571 83-186 (297)
33 PF02055 Glyco_hydro_30: O-Gly 96.6 0.032 7E-07 63.4 14.5 335 41-404 74-491 (496)
34 COG2730 BglC Endoglucanase [Ca 96.6 0.0074 1.6E-07 66.9 8.7 115 56-188 66-193 (407)
35 PRK15014 6-phospho-beta-glucos 96.5 0.0026 5.6E-08 71.9 4.5 96 58-165 69-167 (477)
36 PRK09852 cryptic 6-phospho-bet 96.5 0.0025 5.5E-08 71.9 4.4 96 58-165 71-169 (474)
37 PF14488 DUF4434: Domain of un 96.3 0.062 1.3E-06 52.5 12.7 134 53-217 15-157 (166)
38 PLN02998 beta-glucosidase 96.2 0.0045 9.8E-08 70.3 4.6 100 58-165 82-183 (497)
39 PRK13511 6-phospho-beta-galact 96.2 0.005 1.1E-07 69.5 4.9 99 58-165 54-153 (469)
40 PRK09593 arb 6-phospho-beta-gl 96.2 0.0062 1.3E-07 68.9 5.5 100 58-165 73-175 (478)
41 PLN02814 beta-glucosidase 96.1 0.0054 1.2E-07 69.8 4.6 100 58-165 77-178 (504)
42 PRK09589 celA 6-phospho-beta-g 96.1 0.0064 1.4E-07 68.7 5.0 100 58-165 67-169 (476)
43 TIGR01233 lacG 6-phospho-beta- 96.1 0.0069 1.5E-07 68.3 5.2 96 58-165 53-149 (467)
44 PLN02849 beta-glucosidase 95.9 0.0085 1.8E-07 68.2 5.0 100 58-165 79-180 (503)
45 COG3867 Arabinogalactan endo-1 95.9 0.037 8.1E-07 58.3 8.9 117 60-195 65-191 (403)
46 smart00812 Alpha_L_fucos Alpha 95.7 3.5 7.6E-05 45.7 24.3 251 50-354 76-343 (384)
47 PF14871 GHL6: Hypothetical gl 94.9 0.14 3.1E-06 48.2 8.7 99 62-165 4-124 (132)
48 COG2723 BglB Beta-glucosidase/ 94.7 0.04 8.7E-07 61.6 5.1 96 58-165 59-157 (460)
49 PRK09936 hypothetical protein; 94.7 0.73 1.6E-05 48.8 14.0 58 53-116 33-91 (296)
50 TIGR01515 branching_enzym alph 93.8 0.68 1.5E-05 54.2 13.1 53 64-117 163-226 (613)
51 TIGR00542 hxl6Piso_put hexulos 92.2 1.9 4.2E-05 44.8 12.4 131 57-215 15-149 (279)
52 COG3250 LacZ Beta-galactosidas 91.9 0.83 1.8E-05 55.0 10.4 99 469-576 61-182 (808)
53 KOG0496 Beta-galactosidase [Ca 91.4 2.2 4.8E-05 49.7 12.5 74 470-552 556-630 (649)
54 PRK05402 glycogen branching en 91.2 2.2 4.8E-05 51.0 12.9 54 64-117 272-335 (726)
55 PRK14706 glycogen branching en 90.9 3.9 8.5E-05 48.2 14.4 52 63-117 173-237 (639)
56 smart00642 Aamy Alpha-amylase 90.7 0.72 1.6E-05 45.0 7.0 68 57-124 18-97 (166)
57 PF01120 Alpha_L_fucos: Alpha- 90.4 30 0.00065 37.7 20.2 238 56-348 92-344 (346)
58 PF02638 DUF187: Glycosyl hydr 90.1 3.2 6.9E-05 44.6 11.8 117 56-184 17-162 (311)
59 PRK12568 glycogen branching en 89.8 6.6 0.00014 47.0 15.1 57 61-119 273-341 (730)
60 PF05913 DUF871: Bacterial pro 89.5 0.64 1.4E-05 50.9 6.1 73 46-124 2-74 (357)
61 KOG2230 Predicted beta-mannosi 89.5 4.6 9.9E-05 46.4 12.6 150 33-222 327-494 (867)
62 PLN02447 1,4-alpha-glucan-bran 89.4 8.8 0.00019 46.1 15.7 62 57-119 250-322 (758)
63 cd00019 AP2Ec AP endonuclease 88.6 4.1 8.9E-05 42.3 11.1 97 58-183 10-107 (279)
64 PRK14705 glycogen branching en 88.2 8.1 0.00018 48.8 14.9 57 61-117 769-835 (1224)
65 PRK13210 putative L-xylulose 5 87.6 5.5 0.00012 41.2 11.3 130 59-215 17-149 (284)
66 PF08531 Bac_rhamnosid_N: Alph 86.3 5.5 0.00012 38.9 9.9 93 493-588 5-113 (172)
67 PF01229 Glyco_hydro_39: Glyco 85.7 4 8.6E-05 46.4 9.7 69 47-118 28-105 (486)
68 PRK12313 glycogen branching en 85.6 9.4 0.0002 45.0 13.0 56 62-117 175-240 (633)
69 PF01261 AP_endonuc_2: Xylose 85.1 1.3 2.9E-05 42.8 4.9 125 64-215 1-128 (213)
70 PF13200 DUF4015: Putative gly 85.1 3.3 7.1E-05 44.7 8.2 112 56-168 11-137 (316)
71 COG1649 Uncharacterized protei 84.9 6.6 0.00014 43.9 10.6 123 55-187 61-210 (418)
72 PF14307 Glyco_tran_WbsX: Glyc 84.5 12 0.00025 40.7 12.3 139 55-222 55-198 (345)
73 TIGR01531 glyc_debranch glycog 84.2 4.5 9.7E-05 51.2 9.7 112 35-152 104-235 (1464)
74 TIGR02631 xylA_Arthro xylose i 82.7 18 0.00038 40.2 12.8 136 58-219 32-178 (382)
75 PRK13209 L-xylulose 5-phosphat 82.6 9.1 0.0002 39.7 10.2 125 59-215 22-154 (283)
76 COG3934 Endo-beta-mannanase [C 82.5 1.2 2.6E-05 50.0 3.7 157 35-209 3-168 (587)
77 PRK09856 fructoselysine 3-epim 81.8 21 0.00046 36.8 12.5 130 59-215 14-145 (275)
78 PF00128 Alpha-amylase: Alpha 81.7 1.3 2.9E-05 45.4 3.5 57 61-117 7-72 (316)
79 TIGR03234 OH-pyruv-isom hydrox 81.4 18 0.00039 36.9 11.6 43 59-115 15-57 (254)
80 PLN02960 alpha-amylase 81.0 44 0.00095 41.0 16.0 57 61-117 420-486 (897)
81 PRK01060 endonuclease IV; Prov 80.9 16 0.00035 37.8 11.3 93 60-181 14-109 (281)
82 PRK09997 hydroxypyruvate isome 80.5 26 0.00057 35.9 12.6 50 49-115 9-58 (258)
83 PRK09441 cytoplasmic alpha-amy 79.9 3.1 6.8E-05 47.1 6.0 61 57-117 18-101 (479)
84 cd06593 GH31_xylosidase_YicI Y 77.0 6 0.00013 42.0 6.8 69 55-123 21-92 (308)
85 COG3623 SgaU Putative L-xylulo 76.5 20 0.00044 37.2 9.8 87 58-165 18-106 (287)
86 PF13199 Glyco_hydro_66: Glyco 76.4 53 0.0011 38.4 14.5 160 56-221 116-308 (559)
87 cd06595 GH31_xylosidase_XylS-l 75.6 31 0.00067 36.6 11.6 65 56-120 23-97 (292)
88 PF02679 ComA: (2R)-phospho-3- 74.7 4 8.8E-05 42.5 4.5 52 57-118 83-134 (244)
89 TIGR02402 trehalose_TreZ malto 73.9 5.9 0.00013 45.8 6.1 54 61-117 114-180 (542)
90 COG0296 GlgB 1,4-alpha-glucan 73.2 7.8 0.00017 45.5 6.8 57 56-116 163-233 (628)
91 smart00518 AP2Ec AP endonuclea 72.2 55 0.0012 33.7 12.3 101 48-181 3-104 (273)
92 PRK10933 trehalose-6-phosphate 71.6 8 0.00017 44.8 6.5 58 57-117 32-101 (551)
93 PRK10785 maltodextrin glucosid 70.6 7.4 0.00016 45.5 6.0 58 60-117 181-246 (598)
94 PRK09989 hypothetical protein; 70.1 43 0.00092 34.4 10.9 42 60-115 17-58 (258)
95 PF08308 PEGA: PEGA domain; I 69.7 5.8 0.00013 32.6 3.5 39 495-543 3-41 (71)
96 cd06600 GH31_MGAM-like This fa 69.7 44 0.00095 35.9 11.2 66 56-122 22-89 (317)
97 TIGR02403 trehalose_treC alpha 69.5 7.2 0.00016 45.1 5.5 60 56-117 25-95 (543)
98 TIGR02104 pulA_typeI pullulana 68.3 9.5 0.00021 44.7 6.2 55 62-117 168-249 (605)
99 PRK09505 malS alpha-amylase; R 68.0 10 0.00022 45.2 6.4 58 60-117 232-312 (683)
100 COG3589 Uncharacterized conser 67.6 14 0.00029 40.2 6.6 72 46-124 4-76 (360)
101 PF01791 DeoC: DeoC/LacD famil 67.4 2 4.3E-05 43.9 0.4 53 61-116 79-131 (236)
102 cd06592 GH31_glucosidase_KIAA1 67.1 19 0.0004 38.4 7.7 68 53-123 25-96 (303)
103 PRK12677 xylose isomerase; Pro 66.2 1.1E+02 0.0023 34.1 13.5 89 59-165 32-124 (384)
104 cd06589 GH31 The enzymes of gl 66.1 1E+02 0.0022 32.0 12.9 65 56-121 22-90 (265)
105 cd04908 ACT_Bt0572_1 N-termina 65.8 21 0.00046 28.7 6.1 55 57-115 12-66 (66)
106 TIGR03849 arch_ComA phosphosul 65.6 13 0.00027 38.7 5.8 52 58-119 71-122 (237)
107 PF02065 Melibiase: Melibiase; 65.4 98 0.0021 34.6 13.1 89 51-139 51-148 (394)
108 PF03422 CBM_6: Carbohydrate b 64.9 71 0.0015 28.7 10.1 70 470-547 31-110 (125)
109 PF03659 Glyco_hydro_71: Glyco 63.9 30 0.00064 38.5 8.7 54 55-117 14-67 (386)
110 TIGR02100 glgX_debranch glycog 63.6 30 0.00066 41.3 9.3 55 63-117 189-265 (688)
111 PRK14582 pgaB outer membrane N 63.6 42 0.00092 40.0 10.3 111 58-186 334-468 (671)
112 PRK13398 3-deoxy-7-phosphohept 63.5 30 0.00066 36.4 8.3 77 35-117 20-98 (266)
113 TIGR02456 treS_nterm trehalose 63.1 15 0.00033 42.3 6.5 58 56-116 26-95 (539)
114 cd06547 GH85_ENGase Endo-beta- 62.5 13 0.00029 40.5 5.5 114 74-218 32-147 (339)
115 PRK14510 putative bifunctional 61.8 12 0.00026 47.5 5.8 56 62-117 191-267 (1221)
116 PF11324 DUF3126: Protein of u 60.3 20 0.00043 29.8 4.8 33 500-532 25-59 (63)
117 KOG0626 Beta-glucosidase, lact 60.3 14 0.00031 42.3 5.5 112 59-180 92-207 (524)
118 PF06832 BiPBP_C: Penicillin-B 60.0 15 0.00033 31.6 4.5 45 492-543 32-77 (89)
119 cd06591 GH31_xylosidase_XylS X 60.0 20 0.00044 38.4 6.4 65 56-121 22-90 (319)
120 cd02742 GH20_hexosaminidase Be 59.9 37 0.0008 36.2 8.3 59 56-117 14-92 (303)
121 TIGR02401 trehalose_TreY malto 59.1 24 0.00051 42.9 7.3 64 56-119 14-87 (825)
122 PLN02361 alpha-amylase 58.6 22 0.00047 39.8 6.5 57 61-117 32-96 (401)
123 PLN03059 beta-galactosidase; P 58.0 13 0.00028 45.0 4.9 68 472-547 620-714 (840)
124 PF01261 AP_endonuc_2: Xylose 57.7 50 0.0011 31.7 8.2 104 58-189 27-137 (213)
125 PRK09875 putative hydrolase; P 57.4 72 0.0016 34.1 9.9 89 28-136 7-95 (292)
126 cd06603 GH31_GANC_GANAB_alpha 56.4 26 0.00056 37.9 6.5 68 56-124 22-91 (339)
127 cd06602 GH31_MGAM_SI_GAA This 56.1 26 0.00056 38.1 6.4 68 56-124 22-93 (339)
128 PF14587 Glyco_hydr_30_2: O-Gl 55.1 92 0.002 34.7 10.4 121 86-222 93-227 (384)
129 cd06598 GH31_transferase_CtsZ 55.1 29 0.00064 37.2 6.6 67 56-122 22-95 (317)
130 PRK14507 putative bifunctional 54.8 29 0.00062 45.4 7.3 62 55-119 755-829 (1693)
131 PRK14511 maltooligosyl trehalo 53.9 33 0.00071 42.0 7.3 62 55-120 17-92 (879)
132 TIGR02103 pullul_strch alpha-1 53.7 23 0.00049 43.6 6.0 21 97-117 404-424 (898)
133 PF04914 DltD_C: DltD C-termin 53.2 25 0.00055 33.1 5.0 53 97-167 36-88 (130)
134 PRK08673 3-deoxy-7-phosphohept 52.1 46 0.00099 36.4 7.5 76 35-117 86-164 (335)
135 KOG1412 Aspartate aminotransfe 51.9 60 0.0013 35.3 8.0 116 57-222 132-250 (410)
136 PRK00042 tpiA triosephosphate 51.9 27 0.00059 36.5 5.5 49 64-118 79-127 (250)
137 cd06599 GH31_glycosidase_Aec37 51.7 40 0.00088 36.1 7.0 66 57-122 28-98 (317)
138 cd06565 GH20_GcnA-like Glycosy 51.7 82 0.0018 33.6 9.3 66 56-124 15-87 (301)
139 cd06545 GH18_3CO4_chitinase Th 51.6 64 0.0014 33.2 8.3 75 88-188 36-111 (253)
140 TIGR00677 fadh2_euk methylenet 51.2 54 0.0012 34.8 7.7 109 44-166 130-251 (281)
141 PF12876 Cellulase-like: Sugar 50.4 26 0.00056 30.3 4.3 47 174-220 8-63 (88)
142 cd06416 GH25_Lys1-like Lys-1 i 50.4 33 0.00072 33.9 5.7 89 46-137 54-157 (196)
143 cd00311 TIM Triosephosphate is 48.8 33 0.00072 35.7 5.6 49 64-118 77-125 (242)
144 PRK03705 glycogen debranching 48.6 30 0.00066 41.1 5.9 55 63-117 184-262 (658)
145 PF14701 hDGE_amylase: glucano 48.3 92 0.002 35.1 9.2 109 51-165 13-143 (423)
146 COG1306 Uncharacterized conser 47.9 46 0.00099 35.8 6.4 59 56-117 75-144 (400)
147 cd06604 GH31_glucosidase_II_Ma 47.9 45 0.00098 36.0 6.7 67 56-123 22-90 (339)
148 cd06601 GH31_lyase_GLase GLase 47.8 1.2E+02 0.0027 32.9 10.0 72 50-122 13-89 (332)
149 cd06563 GH20_chitobiase-like T 47.5 97 0.0021 33.9 9.2 73 32-117 2-106 (357)
150 PLN00196 alpha-amylase; Provis 47.4 44 0.00094 37.7 6.6 57 61-117 47-112 (428)
151 TIGR02102 pullulan_Gpos pullul 46.9 34 0.00073 43.1 6.1 21 97-117 555-575 (1111)
152 PLN02877 alpha-amylase/limit d 46.3 36 0.00077 42.2 6.1 20 98-117 467-486 (970)
153 cd06564 GH20_DspB_LnbB-like Gl 46.3 73 0.0016 34.3 8.0 72 33-117 2-102 (326)
154 cd06568 GH20_SpHex_like A subg 45.8 54 0.0012 35.5 6.9 76 32-117 2-95 (329)
155 TIGR00676 fadh2 5,10-methylene 45.3 86 0.0019 32.9 8.1 110 43-166 125-247 (272)
156 PF01055 Glyco_hydro_31: Glyco 44.9 59 0.0013 36.2 7.2 71 55-126 40-112 (441)
157 smart00481 POLIIIAc DNA polyme 44.4 70 0.0015 25.8 5.8 43 60-115 17-59 (67)
158 cd06597 GH31_transferase_CtsY 43.5 60 0.0013 35.3 6.8 73 50-122 13-110 (340)
159 PLN02540 methylenetetrahydrofo 43.3 50 0.0011 38.6 6.4 90 63-166 161-259 (565)
160 PRK09856 fructoselysine 3-epim 42.9 36 0.00077 35.0 4.8 55 59-117 91-149 (275)
161 cd06562 GH20_HexA_HexB-like Be 42.9 1.4E+02 0.003 32.6 9.5 75 32-116 2-89 (348)
162 TIGR00419 tim triosephosphate 42.3 50 0.0011 33.5 5.6 44 64-117 74-117 (205)
163 PRK15492 triosephosphate isome 41.9 49 0.0011 34.8 5.6 49 64-118 87-135 (260)
164 COG1735 Php Predicted metal-de 41.7 1.1E+02 0.0023 33.2 8.0 154 27-222 16-173 (316)
165 PF02228 Gag_p19: Major core p 40.5 12 0.00026 32.3 0.7 37 56-109 20-56 (92)
166 PRK09432 metF 5,10-methylenete 40.4 82 0.0018 33.7 7.1 90 63-167 168-267 (296)
167 PRK12331 oxaloacetate decarbox 39.6 63 0.0014 36.7 6.4 56 50-117 88-143 (448)
168 COG1082 IolE Sugar phosphate i 39.2 3.8E+02 0.0083 27.1 11.7 51 56-115 13-63 (274)
169 PRK14567 triosephosphate isome 39.1 58 0.0013 34.2 5.6 49 64-118 78-126 (253)
170 PF07691 PA14: PA14 domain; I 38.9 1.6E+02 0.0034 26.9 8.0 68 473-548 48-121 (145)
171 PRK14565 triosephosphate isome 38.8 59 0.0013 33.8 5.6 49 64-118 78-126 (237)
172 PRK14566 triosephosphate isome 38.1 62 0.0013 34.2 5.6 49 64-118 88-136 (260)
173 PF14307 Glyco_tran_WbsX: Glyc 38.0 61 0.0013 35.2 5.9 44 32-77 150-194 (345)
174 cd01299 Met_dep_hydrolase_A Me 37.9 81 0.0018 33.4 6.7 61 56-117 118-180 (342)
175 COG3320 Putative dehydrogenase 37.9 19 0.00042 39.7 1.9 36 100-136 176-214 (382)
176 PLN02429 triosephosphate isome 37.8 60 0.0013 35.2 5.6 45 64-118 140-188 (315)
177 PF11008 DUF2846: Protein of u 37.6 61 0.0013 29.5 4.9 38 502-546 40-77 (117)
178 PF00728 Glyco_hydro_20: Glyco 36.9 48 0.001 35.5 4.8 62 56-117 16-93 (351)
179 cd02875 GH18_chitobiase Chitob 36.9 3.5E+02 0.0076 29.6 11.5 77 100-209 67-143 (358)
180 KOG2230 Predicted beta-mannosi 36.8 91 0.002 36.4 6.9 70 471-547 76-145 (867)
181 cd06570 GH20_chitobiase-like_1 36.5 94 0.002 33.5 6.9 72 33-117 3-88 (311)
182 KOG0622 Ornithine decarboxylas 35.9 62 0.0013 36.3 5.3 68 55-132 190-258 (448)
183 PF03644 Glyco_hydro_85: Glyco 35.9 31 0.00067 37.2 3.1 114 73-218 27-142 (311)
184 PLN02561 triosephosphate isome 35.7 68 0.0015 33.7 5.5 49 64-118 81-129 (253)
185 PRK13209 L-xylulose 5-phosphat 35.7 2E+02 0.0044 29.6 9.1 104 54-187 53-161 (283)
186 TIGR00433 bioB biotin syntheta 35.0 58 0.0013 34.0 5.0 52 61-116 123-177 (296)
187 TIGR02455 TreS_stutzeri trehal 35.0 76 0.0016 37.7 6.2 75 56-134 76-175 (688)
188 PRK12858 tagatose 1,6-diphosph 34.5 40 0.00087 36.9 3.7 53 63-117 111-163 (340)
189 COG1523 PulA Type II secretory 34.5 58 0.0012 39.0 5.2 55 63-117 205-285 (697)
190 PLN02784 alpha-amylase 33.6 83 0.0018 38.6 6.3 57 61-117 524-588 (894)
191 PTZ00333 triosephosphate isome 33.6 84 0.0018 33.0 5.7 49 64-118 82-130 (255)
192 PF12733 Cadherin-like: Cadher 33.5 99 0.0021 26.2 5.3 44 494-546 27-71 (88)
193 PRK14040 oxaloacetate decarbox 33.4 77 0.0017 37.3 6.0 53 50-114 89-141 (593)
194 PLN02231 alanine transaminase 33.3 97 0.0021 35.9 6.8 59 54-116 252-310 (534)
195 PRK08645 bifunctional homocyst 32.9 1.3E+02 0.0029 35.4 7.9 110 41-165 461-578 (612)
196 cd03334 Fab1_TCP TCP-1 like do 32.9 1.9E+02 0.0041 30.2 8.3 61 41-118 87-160 (261)
197 cd07937 DRE_TIM_PC_TC_5S Pyruv 32.7 1.1E+02 0.0023 32.3 6.5 51 54-116 87-137 (275)
198 cd06569 GH20_Sm-chitobiase-lik 32.1 1.2E+02 0.0026 34.4 7.1 74 31-117 5-117 (445)
199 smart00758 PA14 domain in bact 32.0 2E+02 0.0044 26.1 7.6 65 473-546 46-111 (136)
200 PF01075 Glyco_transf_9: Glyco 32.0 40 0.00086 33.9 3.0 78 40-120 104-195 (247)
201 PRK13210 putative L-xylulose 5 32.0 74 0.0016 32.7 5.1 59 58-117 94-153 (284)
202 PF03102 NeuB: NeuB family; I 32.0 69 0.0015 33.4 4.8 65 54-118 52-121 (241)
203 PF07755 DUF1611: Protein of u 31.8 32 0.0007 37.0 2.4 116 42-222 34-151 (301)
204 PRK09997 hydroxypyruvate isome 31.7 71 0.0015 32.7 4.9 60 58-117 85-144 (258)
205 COG0149 TpiA Triosephosphate i 31.6 89 0.0019 32.8 5.5 49 64-118 81-129 (251)
206 cd00537 MTHFR Methylenetetrahy 31.0 1.4E+02 0.0031 31.1 7.0 104 49-166 138-250 (274)
207 PF00121 TIM: Triosephosphate 30.5 33 0.00071 35.7 2.1 49 64-118 77-125 (244)
208 PF13380 CoA_binding_2: CoA bi 30.5 1.2E+02 0.0025 27.7 5.6 44 55-114 63-106 (116)
209 TIGR01698 PUNP purine nucleoti 30.4 81 0.0017 32.8 5.0 41 37-77 47-88 (237)
210 PF08306 Glyco_hydro_98M: Glyc 30.3 40 0.00087 36.5 2.8 59 44-113 104-169 (324)
211 cd06594 GH31_glucosidase_YihQ 29.9 1.9E+02 0.0041 31.1 7.9 68 56-123 21-97 (317)
212 COG0366 AmyA Glycosidases [Car 29.9 91 0.002 34.7 5.7 56 62-117 33-97 (505)
213 TIGR00587 nfo apurinic endonuc 29.5 3.6E+02 0.0078 28.1 9.8 83 61-165 14-98 (274)
214 cd02871 GH18_chitinase_D-like 29.3 3E+02 0.0064 29.4 9.3 87 98-213 61-147 (312)
215 cd04882 ACT_Bt0572_2 C-termina 29.2 1.1E+02 0.0025 23.6 4.7 55 57-113 10-64 (65)
216 PTZ00377 alanine aminotransfer 29.2 1.4E+02 0.003 33.8 7.0 60 53-116 198-257 (481)
217 cd03789 GT1_LPS_heptosyltransf 29.2 83 0.0018 32.4 4.9 78 43-123 124-213 (279)
218 PRK10658 putative alpha-glucos 29.1 1.5E+02 0.0033 35.3 7.6 66 56-123 281-351 (665)
219 PF00834 Ribul_P_3_epim: Ribul 28.9 1.8E+02 0.004 29.3 7.1 96 50-166 62-162 (201)
220 PF00282 Pyridoxal_deC: Pyrido 28.8 1E+02 0.0022 33.9 5.7 71 39-116 139-230 (373)
221 PF14683 CBM-like: Polysacchar 28.8 1.6E+02 0.0035 28.8 6.5 52 493-545 79-150 (167)
222 cd04740 DHOD_1B_like Dihydroor 28.7 1.5E+02 0.0033 31.1 6.9 60 56-119 100-163 (296)
223 KOG3833 Uncharacterized conser 28.7 63 0.0014 35.1 3.9 53 59-117 444-499 (505)
224 PF04909 Amidohydro_2: Amidohy 28.4 2.1E+02 0.0046 28.6 7.6 65 45-118 73-138 (273)
225 TIGR03234 OH-pyruv-isom hydrox 27.3 89 0.0019 31.8 4.7 60 58-117 84-143 (254)
226 cd06547 GH85_ENGase Endo-beta- 27.1 3E+02 0.0064 30.1 8.9 83 54-166 45-137 (339)
227 PRK09267 flavodoxin FldA; Vali 27.1 3.6E+02 0.0078 25.7 8.6 74 38-114 44-117 (169)
228 PLN03036 glutamine synthetase; 26.9 2.2E+02 0.0047 32.3 8.0 67 58-130 230-308 (432)
229 PF14606 Lipase_GDSL_3: GDSL-l 26.8 4.7E+02 0.01 26.0 9.4 124 41-211 2-131 (178)
230 PF11941 DUF3459: Domain of un 26.5 1.6E+02 0.0035 24.8 5.5 13 371-383 41-53 (89)
231 KOG3625 Alpha amylase [Carbohy 26.5 59 0.0013 39.9 3.4 58 56-116 140-216 (1521)
232 KOG0805 Carbon-nitrogen hydrol 26.4 2E+02 0.0044 30.3 6.9 74 98-185 38-122 (337)
233 TIGR01361 DAHP_synth_Bsub phos 26.2 1.9E+02 0.0042 30.3 7.0 81 28-117 13-96 (260)
234 PRK12595 bifunctional 3-deoxy- 26.1 3.5E+02 0.0077 29.8 9.3 82 28-117 106-189 (360)
235 TIGR02195 heptsyl_trn_II lipop 26.1 1.4E+02 0.0031 31.6 6.2 80 40-119 173-262 (334)
236 TIGR00542 hxl6Piso_put hexulos 26.0 1.1E+02 0.0024 31.7 5.2 55 59-117 95-153 (279)
237 cd07944 DRE_TIM_HOA_like 4-hyd 26.0 1.4E+02 0.003 31.3 5.9 66 53-118 15-81 (266)
238 PF04566 RNA_pol_Rpb2_4: RNA p 25.6 59 0.0013 26.8 2.4 12 507-518 1-12 (63)
239 PF00120 Gln-synt_C: Glutamine 25.5 1.3E+02 0.0027 31.3 5.4 61 56-121 67-139 (259)
240 PRK10966 exonuclease subunit S 25.4 4.3E+02 0.0092 29.6 9.9 85 42-139 41-135 (407)
241 PF10566 Glyco_hydro_97: Glyco 25.2 3.1E+02 0.0068 29.2 8.3 116 55-178 29-160 (273)
242 COG5520 O-Glycosyl hydrolase [ 25.2 1E+03 0.022 26.7 15.4 86 106-212 111-206 (433)
243 PRK10422 lipopolysaccharide co 25.1 1.5E+02 0.0034 31.8 6.3 65 52-119 196-273 (352)
244 PRK06703 flavodoxin; Provision 25.1 3.1E+02 0.0066 25.6 7.6 103 38-165 46-148 (151)
245 smart00606 CBD_IV Cellulose Bi 24.9 5.1E+02 0.011 23.3 9.6 51 493-545 56-116 (129)
246 PRK05265 pyridoxine 5'-phospha 24.9 78 0.0017 33.0 3.7 48 58-123 113-161 (239)
247 PF03170 BcsB: Bacterial cellu 24.9 2.1E+02 0.0044 33.6 7.6 45 502-546 62-109 (605)
248 PLN02450 1-aminocyclopropane-1 24.1 2.1E+02 0.0046 32.3 7.3 59 54-116 172-230 (468)
249 PRK10569 NAD(P)H-dependent FMN 24.1 1.6E+02 0.0035 29.3 5.7 82 42-134 2-85 (191)
250 cd06831 PLPDE_III_ODC_like_AZI 23.9 85 0.0019 34.8 4.0 66 55-132 147-215 (394)
251 cd07944 DRE_TIM_HOA_like 4-hyd 23.8 1.3E+02 0.0027 31.6 5.1 57 45-117 73-129 (266)
252 PRK09919 anti-adapter protein 23.4 1.4E+02 0.0031 27.7 4.6 27 453-485 17-43 (114)
253 PRK13962 bifunctional phosphog 23.3 1.3E+02 0.0028 35.8 5.5 49 64-118 474-522 (645)
254 PF07905 PucR: Purine cataboli 23.2 3.8E+02 0.0083 24.4 7.6 67 38-117 40-106 (123)
255 COG5309 Exo-beta-1,3-glucanase 23.2 8.5E+02 0.018 26.2 10.7 120 56-223 61-180 (305)
256 cd06418 GH25_BacA-like BacA is 23.0 2.4E+02 0.0053 28.6 6.8 91 56-168 50-141 (212)
257 CHL00200 trpA tryptophan synth 22.9 1.6E+02 0.0034 31.1 5.5 45 61-119 109-153 (263)
258 PLN02284 glutamine synthetase 22.9 2.8E+02 0.0061 30.4 7.7 61 64-130 176-248 (354)
259 COG0156 BioF 7-keto-8-aminopel 22.8 1.1E+02 0.0023 34.3 4.4 79 26-116 123-207 (388)
260 PF09587 PGA_cap: Bacterial ca 22.8 5.3E+02 0.011 26.4 9.4 80 34-121 122-227 (250)
261 TIGR02427 protocat_pcaD 3-oxoa 22.7 1.6E+02 0.0036 28.0 5.4 82 40-133 12-94 (251)
262 cd00003 PNPsynthase Pyridoxine 22.7 1E+02 0.0022 32.1 3.9 48 58-123 110-158 (234)
263 PRK09739 hypothetical protein; 22.7 2.4E+02 0.0051 27.9 6.6 76 41-117 4-88 (199)
264 PTZ00372 endonuclease 4-like p 22.6 1.1E+03 0.025 26.5 13.1 79 61-165 144-228 (413)
265 COG2179 Predicted hydrolase of 22.3 1.6E+02 0.0034 29.3 5.0 45 63-116 19-68 (175)
266 PRK10964 ADP-heptose:LPS hepto 22.3 1.9E+02 0.004 30.6 6.1 76 41-119 178-264 (322)
267 PRK13125 trpA tryptophan synth 22.2 1.6E+02 0.0034 30.4 5.4 60 46-119 79-138 (244)
268 KOG0259 Tyrosine aminotransfer 21.9 1E+02 0.0022 34.4 4.0 66 47-116 171-238 (447)
269 PF11790 Glyco_hydro_cc: Glyco 21.9 1.4E+02 0.0031 30.6 5.0 100 58-167 90-201 (239)
270 PRK04302 triosephosphate isome 21.8 1.6E+02 0.0035 29.8 5.3 64 45-119 58-123 (223)
271 TIGR02201 heptsyl_trn_III lipo 21.5 1.8E+02 0.004 30.9 5.9 66 52-120 194-272 (344)
272 PLN02607 1-aminocyclopropane-1 21.4 2.5E+02 0.0054 31.7 7.1 59 54-116 181-239 (447)
273 COG1891 Uncharacterized protei 21.4 29 0.00064 34.6 -0.2 69 42-116 115-186 (235)
274 PLN02763 hydrolase, hydrolyzin 21.4 2.6E+02 0.0057 35.0 7.7 68 56-124 199-268 (978)
275 COG3622 Hfi Hydroxypyruvate is 21.3 4E+02 0.0086 28.1 7.8 60 60-133 17-79 (260)
276 COG3684 LacD Tagatose-1,6-bisp 21.3 71 0.0015 33.8 2.5 52 63-117 116-167 (306)
277 TIGR03128 RuMP_HxlA 3-hexulose 21.2 2E+02 0.0043 28.3 5.7 41 63-116 68-108 (206)
278 cd02810 DHOD_DHPD_FMN Dihydroo 21.1 2.1E+02 0.0044 29.9 6.1 60 56-119 109-171 (289)
279 cd08185 Fe-ADH1 Iron-containin 21.0 1.8E+02 0.0039 31.9 5.9 67 40-118 25-91 (380)
280 PLN02389 biotin synthase 21.0 1.2E+02 0.0027 33.6 4.5 50 61-113 178-229 (379)
281 PF08821 CGGC: CGGC domain; I 20.9 3E+02 0.0065 25.1 6.2 67 44-116 38-105 (107)
282 PRK10076 pyruvate formate lyas 20.8 3.7E+02 0.0079 27.3 7.6 125 57-215 53-209 (213)
283 PRK12330 oxaloacetate decarbox 20.7 2.1E+02 0.0045 33.1 6.4 53 52-116 91-143 (499)
284 COG1663 LpxK Tetraacyldisaccha 20.6 2.9E+02 0.0063 30.3 7.1 87 39-148 232-322 (336)
285 COG3915 Uncharacterized protei 20.4 4.4E+02 0.0095 25.4 7.3 45 64-114 40-86 (155)
286 PRK13396 3-deoxy-7-phosphohept 20.3 6.4E+02 0.014 27.9 9.7 75 35-117 93-172 (352)
287 TIGR02193 heptsyl_trn_I lipopo 20.2 2.3E+02 0.005 29.8 6.3 75 41-119 180-265 (319)
288 KOG0470 1,4-alpha-glucan branc 20.2 1.1E+02 0.0023 36.8 3.9 57 61-117 258-331 (757)
289 PLN03244 alpha-amylase; Provis 20.1 1.2E+03 0.025 29.0 12.4 24 96-119 440-463 (872)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=2.1e-175 Score=1485.07 Aligned_cols=619 Identities=67% Similarity=1.193 Sum_probs=588.6
Q ss_pred HHHHHhhhcccceeEEEccCcEEECCEEeEEEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeec
Q 006635 15 MALLLGTELIQCSTVTYDRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFE 94 (637)
Q Consensus 15 ~~~~~~~~~~~~~~v~~d~~~l~idG~~~~l~sG~~Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~ 94 (637)
+++...+++....+|+||+++|+|||+|++|+||+|||+|+||++|+|+|+||||+|+|||+||||||+|||+||+|||+
T Consensus 16 ~~~~~~~~~~~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~ 95 (840)
T PLN03059 16 FLLSSSWVSHGSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFE 95 (840)
T ss_pred HHhhhhhhccceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeecc
Confidence 33333778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCC
Q 006635 95 GSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQG 174 (637)
Q Consensus 95 g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~g 174 (637)
|++||++||++|+|+||||||||||||||||++||||.||+++|+|++||+||+|+++|++|+++|+++|++++|++++|
T Consensus 96 G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~G 175 (840)
T PLN03059 96 DRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQG 175 (840)
T ss_pred chHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEccccccccCCccccCcccHHHHHHHHHHHhcCCCCcceeeecCCCCCCccccCCCCCccCCCCCCCCCCCceeee
Q 006635 175 GPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMCKEDDAPDPVINSCNGFYCDAFSPNKPYKPTLWTE 254 (637)
Q Consensus 175 GpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~~~~~p~~vi~~~ng~~~~~~~~~~~~~P~~~tE 254 (637)
|||||+|||||||++.++++.++++||+||++|++++|++|||+||++.+++++++++|||.+|+.|.+.++.+|+||+|
T Consensus 176 GPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~~~~~~~P~m~tE 255 (840)
T PLN03059 176 GPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKDYKPKMWTE 255 (840)
T ss_pred CcEEEEEecccccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchhhhcccCCCCCCcEEec
Confidence 99999999999999877788899999999999999999999999999988899999999999999999888889999999
Q ss_pred eccccccccCCCccCCCHHHHHHHHHHHHHhCCeeeeeeEeecCCCCCCCCCCCcccccccCCCCCCCCCCCCchhHHHH
Q 006635 255 AWSGWFTEFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHL 334 (637)
Q Consensus 255 ~~~Gwf~~wG~~~~~r~~~d~a~~~~~~~~~g~s~~nyYM~hGGTNfG~~~G~~~~~tSYDy~Apl~E~G~~~~pky~~l 334 (637)
||+|||++||++++.|+++|+|+.++++|++|+|++||||||||||||+++|+++++|||||||||||+|++++|||.||
T Consensus 256 ~w~GWf~~wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~t~pKy~~l 335 (840)
T PLN03059 256 AWTGWYTEFGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPREPKWGHL 335 (840)
T ss_pred cCchhHhhcCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCccccccCcchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred HHHHHHHHhhhccccCCCCcccCCCCceEEEEEecCCccEEEEEeecCCCceeEEEECCeEEeeCCceeEEcCCCCeeee
Q 006635 335 KQLHEAIKLCEYALVSSDPTVTSLGTYQQAHVFSAGQQKCAAFLSNYNTKSAARVTFNGRQYNLPPWSISILPDCKNVVF 414 (637)
Q Consensus 335 k~lh~~l~~~~~~Ll~~~p~~~~lg~~~~~~~y~~~~~~~~~Fl~N~~~~~~~~V~f~~~~y~lp~~sv~ilp~c~~v~~ 414 (637)
|++|+++++|+++|+..+|...++|+++|+++|...+ .|++|+.|++++.+++|+|+|++|.||||||||||||++++|
T Consensus 336 r~l~~~~~~~~~~l~~~~p~~~~lg~~~ea~~y~~~~-~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svsilpd~~~~lf 414 (840)
T PLN03059 336 RDLHKAIKLCEPALVSVDPTVTSLGSNQEAHVFKSKS-ACAAFLANYDTKYSVKVTFGNGQYDLPPWSVSILPDCKTAVF 414 (840)
T ss_pred HHHHHHHHhcCccccCCCCceeccCCceeEEEccCcc-chhhheeccCCCCceeEEECCcccccCccceeecccccceee
Confidence 9999999999999999999899999999999999766 799999999999999999999999999999999999999999
Q ss_pred ecceecceeeeEEeecCCCCCCccccccccccCCCCCCceeeccchhhhcccCCccceEEEEEEEEecCCcccccCCCcc
Q 006635 415 NTAKVAVQHTKMQMLPTGSKLLSWETYDEDISSLGESSTLTAIGLLEQINITRDTSDYLWYMTSVEISSSESFLRGGQKP 494 (637)
Q Consensus 415 nTa~v~~~~~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~~~~lEq~~~TkD~sdYlWY~t~v~v~~~~~~~~~~~~~ 494 (637)
||++|++|++.++..+.. ..++|++++|++.+.+++..++.++++||+|+|+|.+|||||+|+|.++.++.+.+++.++
T Consensus 415 nta~v~~q~~~~~~~~~~-~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~~~~~~~~~~~~ 493 (840)
T PLN03059 415 NTARLGAQSSQMKMNPVG-STFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDPDEGFLKTGQYP 493 (840)
T ss_pred eccccccccceeeccccc-ccccceeecccccccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecCCccccccCCCc
Confidence 999999998877654332 3458999999965777778899999999999999999999999999998877656778899
Q ss_pred EEEEccCccEEEEEECCEEEEEEECCcccceeEEEeeEEeeccccEEEEEEeccccccccCcceeeeceeeeEEEEeecC
Q 006635 495 TLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLD 574 (637)
Q Consensus 495 ~L~v~s~~h~~~VfVNG~~iGs~~g~~~~~~f~f~~~i~L~~G~N~IslLs~tvGl~n~G~~~e~~~aGI~g~V~l~g~~ 574 (637)
+|+|.+++|++||||||+++|++++.+.++.|+|+.+|+|+.|.|+|+|||+||||+|||++||.+.|||+|+|+|.|++
T Consensus 494 ~L~v~~~~d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~~~kGI~g~V~i~g~~ 573 (840)
T PLN03059 494 VLTIFSAGHALHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWNAGVLGPVTLKGLN 573 (840)
T ss_pred eEEEcccCcEEEEEECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCcccccccccccccEEEeccc
Confidence 99999999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCcceEeeeeeeeeccccCCCCCCCcceeeCCCCCCCCCceeEEEEeeecCCCCC
Q 006635 575 HGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKVKKKLGNSFN 636 (637)
Q Consensus 575 ~g~~dLs~~~W~yqvGL~GE~~~i~~~~~~~~v~W~~~~~~~~~~~pltWYKt~F~~P~~~~ 636 (637)
+|+.|||+++|+||+||.||+++||+++++.+++|++.+..++ ++|+||||++||+|+|-+
T Consensus 574 ~g~~dls~~~W~y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~-~~p~twYK~~Fd~p~g~D 634 (840)
T PLN03059 574 EGTRDLSGWKWSYKIGLKGEALSLHTITGSSSVEWVEGSLLAQ-KQPLTWYKTTFDAPGGND 634 (840)
T ss_pred CCceecccCccccccCccceeccccccCCCCCccccccccccC-CCCceEEEEEEeCCCCCC
Confidence 9999999999999999999999999998889999988876677 889999999999998743
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.1e-153 Score=1259.56 Aligned_cols=553 Identities=62% Similarity=1.120 Sum_probs=530.7
Q ss_pred ceeEEEccCcEEECCEEeEEEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHH
Q 006635 26 CSTVTYDRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKT 105 (637)
Q Consensus 26 ~~~v~~d~~~l~idG~~~~l~sG~~Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~l 105 (637)
+..|+||+++|+|||+|++++||+|||||++|+||+++|+|||++|+|+|+||||||.|||+||+|||+|+.||++||++
T Consensus 17 ~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl 96 (649)
T KOG0496|consen 17 SFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKL 96 (649)
T ss_pred eeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEecCceeeeecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEcccccc
Q 006635 106 VQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENE 185 (637)
Q Consensus 106 a~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENE 185 (637)
|++.||||+||+||||||||++||+|.||+.+|++.+||+|++|+++|++|+++|+++|| +|+++|||||||+|||||
T Consensus 97 ~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIENE 174 (649)
T KOG0496|consen 97 IHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIENE 174 (649)
T ss_pred HHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEeech
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred ccCCccccCcccHHHHHHHHHHHhcCCCCcceeeecCCCCCCccccCCCCCcc-CCCC-CCCCCCCceeeeecccccccc
Q 006635 186 YGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMCKEDDAPDPVINSCNGFYC-DAFS-PNKPYKPTLWTEAWSGWFTEF 263 (637)
Q Consensus 186 yg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~~~~~p~~vi~~~ng~~~-~~~~-~~~~~~P~~~tE~~~Gwf~~w 263 (637)
||.+...|++.+++|++|.+.|+..++.+|||+||+|.|+|+++|++|||++| +.|. +++|++|+||||+|+|||++|
T Consensus 175 YG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~w 254 (649)
T KOG0496|consen 175 YGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTHW 254 (649)
T ss_pred hhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhhhh
Confidence 99998889999999999999999999999999999999999999999999999 9998 999999999999999999999
Q ss_pred CCCccCCCHHHHHHHHHHHHHhCCeeeeeeEeecCCCCCCCCCCCcccccccCCCCCCCCCCCCchhHHHHHHHHHHHHh
Q 006635 264 GGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKL 343 (637)
Q Consensus 264 G~~~~~r~~~d~a~~~~~~~~~g~s~~nyYM~hGGTNfG~~~G~~~~~tSYDy~Apl~E~G~~~~pky~~lk~lh~~l~~ 343 (637)
|++.+.|++||+|+.+++|+++|++++||||||||||||++|| ++++|||||||||| |..|+|||+|+|.+|..++.
T Consensus 255 Gg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G-~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~d~ 331 (649)
T KOG0496|consen 255 GGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNG-PFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDY 331 (649)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccC-cccccccccccccc--hhhcCCCccccccchhhhhh
Confidence 9999999999999999999999999999999999999999997 99999999999999 99999999999999999999
Q ss_pred hhccccCCCCcccCCCCceEEEEEecCCccEEEEEeecCCCceeEEEECCeEEeeCCceeEEcCCCCeeeeecceeccee
Q 006635 344 CEYALVSSDPTVTSLGTYQQAHVFSAGQQKCAAFLSNYNTKSAARVTFNGRQYNLPPWSISILPDCKNVVFNTAKVAVQH 423 (637)
Q Consensus 344 ~~~~Ll~~~p~~~~lg~~~~~~~y~~~~~~~~~Fl~N~~~~~~~~V~f~~~~y~lp~~sv~ilp~c~~v~~nTa~v~~~~ 423 (637)
|++.+..++++..++|+.++ .|++||.|++...+..|.|++..|.+|+|||+|||||++++||||++.+|
T Consensus 332 ~ep~lv~gd~~~~kyg~~~~---------~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~~- 401 (649)
T KOG0496|consen 332 CEPALVAGDITTAKYGNLRE---------ACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMAQ- 401 (649)
T ss_pred cCccccccCcccccccchhh---------HHHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhccccccc-
Confidence 99999999998888888765 49999999999999999999999999999999999999999999988543
Q ss_pred eeEEeecCCCCCCccccccccccCCCCCCceeeccchhhhcccCCccceEEEEEEEEecCCcccccCCCccEEEEccCcc
Q 006635 424 TKMQMLPTGSKLLSWETYDEDISSLGESSTLTAIGLLEQINITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGH 503 (637)
Q Consensus 424 ~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~~~~lEq~~~TkD~sdYlWY~t~v~v~~~~~~~~~~~~~~L~v~s~~h 503 (637)
|..+.||++......++. .+|||+++|+|.+| +|+++++ | |+||
T Consensus 402 --------------~~~~~e~~~~~~~~~~~~--~ll~~~~~t~d~sd----~t~~~i~-------------l---s~g~ 445 (649)
T KOG0496|consen 402 --------------WISFTEPIPSEAVGQSFG--GLLEQTNLTKDKSD----TTSLKIP-------------L---SLGH 445 (649)
T ss_pred --------------cccccCCCccccccCcce--EEEEEEeeccccCC----CceEeec-------------c---cccc
Confidence 889999986666656566 79999999999999 6666653 2 9999
Q ss_pred EEEEEECCEEEEEEECCcccceeEEEeeEEeeccccEEEEEEeccccccccCcceeeeceeeeEEEEeecCCCcccCCCC
Q 006635 504 AVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQ 583 (637)
Q Consensus 504 ~~~VfVNG~~iGs~~g~~~~~~f~f~~~i~L~~G~N~IslLs~tvGl~n~G~~~e~~~aGI~g~V~l~g~~~g~~dLs~~ 583 (637)
++||||||+++|+.+|...+..+.|.+++.|+.|.|+|+|||++|||+||| +||.+.+||+|||.|.|+ +||+++
T Consensus 446 ~~hVfvNg~~~G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~g~v~l~g~----~~l~~~ 520 (649)
T KOG0496|consen 446 ALHVFVNGEFAGSLHGNNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKGILGPVYLNGL----IDLTWT 520 (649)
T ss_pred eEEEEECCEEeeeEeccccceeEEeecccccccCcceEEEEEEecCCCCcC-cccccccccccceEEeee----ecccee
Confidence 999999999999999998899999999999999999999999999999999 999999999999999986 899999
Q ss_pred cceEeeeeeeeeccccCCCCCCCcceeeCCCCCCCCCceeEEEEeeecCCCCC
Q 006635 584 KWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKVKKKLGNSFN 636 (637)
Q Consensus 584 ~W~yqvGL~GE~~~i~~~~~~~~v~W~~~~~~~~~~~pltWYKt~F~~P~~~~ 636 (637)
+|+||+||+||++++|+++++++|+|...+..++ +||+|||| +||+|+|.+
T Consensus 521 ~w~~~~gl~ge~~~~~~~~~~~~v~w~~~~~~~~-k~P~~w~k-~f~~p~g~~ 571 (649)
T KOG0496|consen 521 KWPYKVGLKGEKLGLHTEEGSSKVKWKKLSNTAT-KQPLTWYK-TFDIPSGSE 571 (649)
T ss_pred ecceecccccchhhccccccccccceeeccCccc-CCCeEEEE-EecCCCCCC
Confidence 9999999999999999999999999999988777 79999999 999999976
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=1.3e-89 Score=726.03 Aligned_cols=297 Identities=42% Similarity=0.804 Sum_probs=233.7
Q ss_pred cEEECCEEeEEEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEE
Q 006635 35 AILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH 114 (637)
Q Consensus 35 ~l~idG~~~~l~sG~~Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vi 114 (637)
+|+|||||++++|||+||+|+||++|+++|+||||+|+|||++|||||+|||+||+|||+|.+||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCceeeeecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEccccccccCCccccC
Q 006635 115 LRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLG 194 (637)
Q Consensus 115 lr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~ 194 (637)
|||||||||||++||+|.||.+++++++||+|+.|+++|++|+++|+++++ ++++++||||||+|||||||. .
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~-----~ 153 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGS-----Y 153 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGC-----T
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCC-----C
Confidence 999999999999999999999999999999999999999999999999999 788999999999999999994 2
Q ss_pred cccHHHHHHHHHHHhcCCCC-cceeeecCC--------CCCCccccCCCCCccCCC--------CCCCCCCCceeeeecc
Q 006635 195 AAGHAYVNWAAKMAVGLDTG-VPWVMCKED--------DAPDPVINSCNGFYCDAF--------SPNKPYKPTLWTEAWS 257 (637)
Q Consensus 195 ~~~~~y~~~l~~~~~~~g~~-vP~~~~~~~--------~~p~~vi~~~ng~~~~~~--------~~~~~~~P~~~tE~~~ 257 (637)
.++++||+.|++++++.+++ ++.++|+.. ++|+..+..|.++.|... ...+|++|.|++|+|+
T Consensus 154 ~~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 154 GTDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp SS-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred cccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 37899999999999999988 666666542 355555666777777432 2457889999999999
Q ss_pred ccccccCCCccCCCHHHHHHHHHHHHHhCCeeeeeeEeecCCCCCCCCCCCcc----cccccCCCCCCCCCCCCchhHHH
Q 006635 258 GWFTEFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFI----TTSYDYDAPLDEYGLMRQPKYGH 333 (637)
Q Consensus 258 Gwf~~wG~~~~~r~~~d~a~~~~~~~~~g~s~~nyYM~hGGTNfG~~~G~~~~----~tSYDy~Apl~E~G~~~~pky~~ 333 (637)
|||++||++.+.+++++++..+++++++| +++||||||||||||+++|+... +|||||+|||+|+|+++ |||.+
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g-~~~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~~-~Ky~~ 311 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSKG-NSLNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQLT-PKYYE 311 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHHC-SEEEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHhh-cccceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCcC-HHHHH
Confidence 99999999999999999999999999999 66799999999999999876554 49999999999999996 99999
Q ss_pred HHHHHHH
Q 006635 334 LKQLHEA 340 (637)
Q Consensus 334 lk~lh~~ 340 (637)
||+||.+
T Consensus 312 lr~l~~~ 318 (319)
T PF01301_consen 312 LRRLHQK 318 (319)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999864
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-34 Score=326.00 Aligned_cols=290 Identities=24% Similarity=0.334 Sum_probs=206.9
Q ss_pred EEEccCcEEECCEEeEEEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEE-cccCCcCCCCCceeeecCcccHHHHHHHHH
Q 006635 29 VTYDRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDT-YVFWNGHEPSPGHYNFEGSYDLVRFIKTVQ 107 (637)
Q Consensus 29 v~~d~~~l~idG~~~~l~sG~~Hy~r~~~~~W~~~l~k~K~~G~N~I~~-yvfWn~hEp~~G~ydF~g~~dL~~fl~la~ 107 (637)
|.+++..+++||+|++++||++||+|+|++.|.++|++||++|+|+|++ |+.|+.|||++|+|||+ .+|++ |+++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 4678999999999999999999999999999999999999999999999 99999999999999999 78888 999999
Q ss_pred HcCCEEEEecCc-eeeeecCCCCCCcccccCCCeeee---------cCChhhHHHHHHHHHHHHHHHHhccccccCCCce
Q 006635 108 RVGLYAHLRIGP-YVCAEWNFGGFPVWLKYVPGISFR---------TDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPI 177 (637)
Q Consensus 108 ~~GL~vilr~GP-yi~aEw~~GG~P~WL~~~p~i~~R---------t~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpI 177 (637)
+.||+||||||| ..|.+|-.+++|+||...+.-..| .+++.|++++++.+++|.+++ +.+|++|
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~------~~~~~~v 152 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERL------YGNGPAV 152 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHH------hccCCce
Confidence 999999999999 999999999999999876543333 346778888877555544443 3789999
Q ss_pred EEccccccccCCccccCcccHHHHHHHHHHHhcC-CCCcceeeec-CCCCCC-ccccCCC--C---Ccc--CCCCCCCCC
Q 006635 178 ILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGL-DTGVPWVMCK-EDDAPD-PVINSCN--G---FYC--DAFSPNKPY 247 (637)
Q Consensus 178 I~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vP~~~~~-~~~~p~-~vi~~~n--g---~~~--~~~~~~~~~ 247 (637)
|+||++||||++.+.+..|.+.+..||++.+-.+ .+.-+|=+.- ..+..+ ..|.+.+ + ..- -.|......
T Consensus 153 ~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~ld~~~f~~e 232 (673)
T COG1874 153 ITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYLDYRRFESE 232 (673)
T ss_pred eEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccchhhHhhhhhh
Confidence 9999999999966666678899999999887321 2222331110 000000 0011111 0 000 011111111
Q ss_pred C----Cceeeeeccccc-cccCCCccCCC-HHHHHHHHHHHHHhCCeeeeeeEeecCCCCC------CCCCCC---c---
Q 006635 248 K----PTLWTEAWSGWF-TEFGGAVHRRP-VQDLAFAVARFIQKGGSFFNYYMYHGGTNFG------RTAGGP---F--- 309 (637)
Q Consensus 248 ~----P~~~tE~~~Gwf-~~wG~~~~~r~-~~d~a~~~~~~~~~g~s~~nyYM~hGGTNfG------~~~G~~---~--- 309 (637)
+ +....|.+-+|| ..|..+.-... .+--++.+++.|..... -||||+|+|++|+ +.+|+. +
T Consensus 233 ~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~m 311 (673)
T COG1874 233 QILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLM 311 (673)
T ss_pred hhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceeec
Confidence 1 333444555666 44444433333 23334555566665555 6999999999999 333432 2
Q ss_pred ----ccccccCCCCCCCCCCCC
Q 006635 310 ----ITTSYDYDAPLDEYGLMR 327 (637)
Q Consensus 310 ----~~tSYDy~Apl~E~G~~~ 327 (637)
..+++++.+.+.+.|.+|
T Consensus 312 e~~P~~vn~~~~n~~~~~G~~~ 333 (673)
T COG1874 312 EQLPSVVNWALYNKLKRPGALR 333 (673)
T ss_pred cCCcchhhhhhccCCCCCcccc
Confidence 479999999999999865
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.84 E-value=1.4e-20 Score=203.66 Aligned_cols=265 Identities=21% Similarity=0.282 Sum_probs=161.1
Q ss_pred eeCCCCCHhHHHHHHHHHHHCCCCEEEE-cccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEecCceeeeecCCC
Q 006635 50 IHYPRSTPEMWEDLIRKAKDGGLDVIDT-YVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFG 128 (637)
Q Consensus 50 ~Hy~r~~~~~W~~~l~k~K~~G~N~I~~-yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~G 128 (637)
+++...|++.|+++|++||++|+|+|++ .+.|...||+||+|||+ .|+++|++|+++||+|||++. .+
T Consensus 2 y~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~~ 70 (374)
T PF02449_consen 2 YYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------TA 70 (374)
T ss_dssp --GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------TT
T ss_pred CCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------cc
Confidence 3455678999999999999999999996 56799999999999999 799999999999999999975 56
Q ss_pred CCCccccc-CCCeee----------------ecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEccccccccCCcc
Q 006635 129 GFPVWLKY-VPGISF----------------RTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESK 191 (637)
Q Consensus 129 G~P~WL~~-~p~i~~----------------Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~ 191 (637)
..|.||.+ .|++.. ..++|.|+++++++++++++.+++++ .||++||+||++...+
T Consensus 71 ~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p-------~vi~~~i~NE~~~~~~ 143 (374)
T PF02449_consen 71 APPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHP-------AVIGWQIDNEPGYHRC 143 (374)
T ss_dssp TS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTT-------TEEEEEECCSTTCTS-
T ss_pred ccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccc-------eEEEEEeccccCcCcC
Confidence 78999964 566432 13478899999999999999998554 7999999999987522
Q ss_pred ccCcccHHHHHHHHHHHhcC-------CC-------------CcceeeecCC----------------------------
Q 006635 192 SLGAAGHAYVNWAAKMAVGL-------DT-------------GVPWVMCKED---------------------------- 223 (637)
Q Consensus 192 ~~~~~~~~y~~~l~~~~~~~-------g~-------------~vP~~~~~~~---------------------------- 223 (637)
....+.++|.+||++.+... |. ..|--+....
T Consensus 144 ~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir 223 (374)
T PF02449_consen 144 YSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIR 223 (374)
T ss_dssp -SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22236788999999988621 11 1222211000
Q ss_pred -CCCCccccC--C----CCC-------ccCC------------CC---------------CCCCCCCceeeeeccccccc
Q 006635 224 -DAPDPVINS--C----NGF-------YCDA------------FS---------------PNKPYKPTLWTEAWSGWFTE 262 (637)
Q Consensus 224 -~~p~~vi~~--~----ng~-------~~~~------------~~---------------~~~~~~P~~~tE~~~Gwf~~ 262 (637)
..|+..+-+ . .+. .+|- .. .....+|.+.+|..+| -..
T Consensus 224 ~~~p~~~vt~n~~~~~~~~~d~~~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g-~~~ 302 (374)
T PF02449_consen 224 EYDPDHPVTTNFMGSWFNGIDYFKWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPG-PVN 302 (374)
T ss_dssp HHSTT-EEE-EE-TT---SS-HHHHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S---S
T ss_pred HhCCCceEEeCccccccCcCCHHHHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCC-CCC
Confidence 001100000 0 000 0110 00 1147899999999998 566
Q ss_pred cCCCccCCCHHHHHHHHHHHHHhCCeeeeeeEeecCCCCCCCCCCCcccccccCCCCCCCCCCCCchhHHHHHHHHHHHH
Q 006635 263 FGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIK 342 (637)
Q Consensus 263 wG~~~~~r~~~d~a~~~~~~~~~g~s~~nyYM~hGGTNfG~~~G~~~~~tSYDy~Apl~E~G~~~~pky~~lk~lh~~l~ 342 (637)
|+.......+..+....-..++.|+..+.|+-+ ...-+|.-.. ..+-|+-+|...+++|.+++++.+-|+
T Consensus 303 ~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~~---------~~g~~~~dg~~~~~~~~e~~~~~~~l~ 372 (374)
T PF02449_consen 303 WRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQF---------HGGLVDHDGREPTRRYREVAQLGRELK 372 (374)
T ss_dssp SSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTTT---------S--SB-TTS--B-HHHHHHHHHHHHHH
T ss_pred CccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchhh---------hcccCCccCCCCCcHHHHHHHHHHHHh
Confidence 766555555667777677888999999888766 3333332211 135688889444689999999988876
Q ss_pred h
Q 006635 343 L 343 (637)
Q Consensus 343 ~ 343 (637)
.
T Consensus 373 ~ 373 (374)
T PF02449_consen 373 K 373 (374)
T ss_dssp T
T ss_pred c
Confidence 4
No 6
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.38 E-value=1.6e-11 Score=129.13 Aligned_cols=193 Identities=20% Similarity=0.272 Sum_probs=127.2
Q ss_pred EEEccCcEEECCEEeEEEEEEeeCC------CCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHH
Q 006635 29 VTYDRKAILINGQRRILISGSIHYP------RSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRF 102 (637)
Q Consensus 29 v~~d~~~l~idG~~~~l~sG~~Hy~------r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~f 102 (637)
|.+.++.|.|||||++|-+...|.. ..+++.++.+|++||++|+|+|++ .|-|.+ .+|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~-----~h~p~~-----------~~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT-----HHYPPS-----------PRF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE-----TTS--S-----------HHH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc-----ccccCc-----------HHH
Confidence 6788999999999999999999963 248899999999999999999999 777766 889
Q ss_pred HHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEccc
Q 006635 103 IKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQI 182 (637)
Q Consensus 103 l~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QI 182 (637)
+++|.++||+|+..+.=.-++.|..-|. ......++.+.+.+.+-++++++..+.|| .||+|=+
T Consensus 65 ~~~cD~~GilV~~e~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~NHP-------SIi~W~~ 128 (298)
T PF02836_consen 65 YDLCDELGILVWQEIPLEGHGSWQDFGN---------CNYDADDPEFRENAEQELREMVRRDRNHP-------SIIMWSL 128 (298)
T ss_dssp HHHHHHHT-EEEEE-S-BSCTSSSSTSC---------TSCTTTSGGHHHHHHHHHHHHHHHHTT-T-------TEEEEEE
T ss_pred HHHHhhcCCEEEEeccccccCccccCCc---------cccCCCCHHHHHHHHHHHHHHHHcCcCcC-------chheeec
Confidence 9999999999997752111222221110 12456789999888888888888888665 8999999
Q ss_pred cccccCCccccCcccHHHHHHHHHHHhcCCCCcceeeecCCC--CCCcc-ccCCCCCcc-----CCCC----C--CCCCC
Q 006635 183 ENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMCKEDD--APDPV-INSCNGFYC-----DAFS----P--NKPYK 248 (637)
Q Consensus 183 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~~~~--~p~~v-i~~~ng~~~-----~~~~----~--~~~~~ 248 (637)
-||- ....+++.|.+++++.+-.-|........ ..+.. .+...+.+- +.+. . ..+++
T Consensus 129 gNE~---------~~~~~~~~l~~~~k~~DptRpv~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~k 199 (298)
T PF02836_consen 129 GNES---------DYREFLKELYDLVKKLDPTRPVTYASNGWDPYVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPDK 199 (298)
T ss_dssp EESS---------HHHHHHHHHHHHHHHH-TTSEEEEETGTSGGSTSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCTS
T ss_pred CccC---------ccccchhHHHHHHHhcCCCCceeecccccccccccccccccccccCCcccHHHHHHHHHhccccCCC
Confidence 9998 24578888999999988887765544310 11111 111111111 0111 1 35789
Q ss_pred Cceeeeeccccccc
Q 006635 249 PTLWTEAWSGWFTE 262 (637)
Q Consensus 249 P~~~tE~~~Gwf~~ 262 (637)
|.+.+|+....+..
T Consensus 200 P~i~sEyg~~~~~~ 213 (298)
T PF02836_consen 200 PIIISEYGADAYNS 213 (298)
T ss_dssp -EEEEEESEBBSST
T ss_pred CeEehhcccccccc
Confidence 99999997665543
No 7
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.25 E-value=1.3e-09 Score=125.40 Aligned_cols=160 Identities=17% Similarity=0.103 Sum_probs=115.0
Q ss_pred eeEEEccCcEEECCEEeEEEEEEeeCC------CCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHH
Q 006635 27 STVTYDRKAILINGQRRILISGSIHYP------RSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLV 100 (637)
Q Consensus 27 ~~v~~d~~~l~idG~~~~l~sG~~Hy~------r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~ 100 (637)
++|++++..|+|||+|+++-+...|.. ..+++.|..+|+.||++|+|+|++ .|-|.+ .
T Consensus 276 R~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~-----sh~p~~-----------~ 339 (604)
T PRK10150 276 RSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT-----SHYPYS-----------E 339 (604)
T ss_pred EEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe-----ccCCCC-----------H
Confidence 568899999999999999999888842 257888999999999999999999 577755 7
Q ss_pred HHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc--------cCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccc
Q 006635 101 RFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK--------YVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFAS 172 (637)
Q Consensus 101 ~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~--------~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~ 172 (637)
+|+++|.|+||+|+..+. . -|+..|.. ..+.......+|.+.++..+-+++++++.+
T Consensus 340 ~~~~~cD~~GllV~~E~p-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~------- 404 (604)
T PRK10150 340 EMLDLADRHGIVVIDETP-A-------VGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARDK------- 404 (604)
T ss_pred HHHHHHHhcCcEEEEecc-c-------ccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcc-------
Confidence 899999999999998752 1 11222221 111111123446666666555666655555
Q ss_pred CCCceEEccccccccCCccccCcccHHHHHHHHHHHhcCCCCcceeeec
Q 006635 173 QGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMCK 221 (637)
Q Consensus 173 ~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~ 221 (637)
|...||||-|-||.... ......+++.+.+.+++++-.-|...+.
T Consensus 405 NHPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~~~ 449 (604)
T PRK10150 405 NHPSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTCVN 449 (604)
T ss_pred CCceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 44589999999997531 1234578888889999988877776553
No 8
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=99.03 E-value=2e-09 Score=103.27 Aligned_cols=104 Identities=23% Similarity=0.296 Sum_probs=78.6
Q ss_pred hhcccCCccceEEEEEEEEecCCcccccCCCccEEEEccCccEEEEEECCEEEEEEECCcccceeEEEeeEEeeccc-cE
Q 006635 462 QINITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGI-NK 540 (637)
Q Consensus 462 q~~~TkD~sdYlWY~t~v~v~~~~~~~~~~~~~~L~v~s~~h~~~VfVNG~~iGs~~g~~~~~~f~f~~~i~L~~G~-N~ 540 (637)
.........++.||+++|+++.+ +++++..|+|+.+.+.+.|||||+++|++.++.. .|.|+..-.|+.|. |.
T Consensus 59 ~~~~~~~~~~~~wYr~~f~lp~~----~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~~--~~~~dIt~~l~~g~~N~ 132 (167)
T PF02837_consen 59 GDPELWDYSGYAWYRRTFTLPAD----WKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGYT--PFEFDITDYLKPGEENT 132 (167)
T ss_dssp TGCCTSTCCSEEEEEEEEEESGG----GTTSEEEEEESEEESEEEEEETTEEEEEEESTTS---EEEECGGGSSSEEEEE
T ss_pred ccccccccCceEEEEEEEEeCch----hcCceEEEEeccceEeeEEEeCCeEEeeeCCCcC--CeEEeChhhccCCCCEE
Confidence 45556778999999999999865 3467899999999999999999999999997642 34444333688898 99
Q ss_pred EEEEEeccccccccCcce-eeeceeeeEEEEe
Q 006635 541 IALLSIAVGLPNVGLHYE-TWETGVRGAVVLH 571 (637)
Q Consensus 541 IslLs~tvGl~n~G~~~e-~~~aGI~g~V~l~ 571 (637)
|+|.+.+..-...-+.++ ..++||.++|.|.
T Consensus 133 l~V~v~~~~~~~~~~~~~~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 133 LAVRVDNWPDGSTIPGFDYFNYAGIWRPVWLE 164 (167)
T ss_dssp EEEEEESSSGGGCGBSSSEEE--EEESEEEEE
T ss_pred EEEEEeecCCCceeecCcCCccCccccEEEEE
Confidence 999999654333312233 6889999999985
No 9
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=99.01 E-value=7.9e-09 Score=125.25 Aligned_cols=258 Identities=19% Similarity=0.180 Sum_probs=152.4
Q ss_pred eeEEEccCcEEECCEEeEEEEEEeeC--C---C-CCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHH
Q 006635 27 STVTYDRKAILINGQRRILISGSIHY--P---R-STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLV 100 (637)
Q Consensus 27 ~~v~~d~~~l~idG~~~~l~sG~~Hy--~---r-~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~ 100 (637)
++|+++++.|+|||+|+++-+...|- + | .+++.|+++|+.||++|+|+|++ .|-|.. .
T Consensus 318 R~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~-----sHyP~~-----------~ 381 (1021)
T PRK10340 318 RDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT-----AHYPND-----------P 381 (1021)
T ss_pred EEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCCC-----------H
Confidence 55788899999999999999998883 2 2 47899999999999999999999 476665 7
Q ss_pred HHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEc
Q 006635 101 RFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILS 180 (637)
Q Consensus 101 ~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~ 180 (637)
+|+++|.|+||+|+-.. |..|..|.. . .+...-+++|.+.++..+=+++++++.+ |...||+|
T Consensus 382 ~fydlcDe~GllV~dE~-~~e~~g~~~-------~--~~~~~~~~~p~~~~~~~~~~~~mV~Rdr-------NHPSIi~W 444 (1021)
T PRK10340 382 RFYELCDIYGLFVMAET-DVESHGFAN-------V--GDISRITDDPQWEKVYVDRIVRHIHAQK-------NHPSIIIW 444 (1021)
T ss_pred HHHHHHHHCCCEEEECC-cccccCccc-------c--cccccccCCHHHHHHHHHHHHHHHHhCC-------CCCEEEEE
Confidence 89999999999999875 333222211 0 0111124667665544333444444444 55689999
Q ss_pred cccccccCCccccCcccHHHHHHHHHHHhcCCCCcceeeecCCCCC--CccccCCCCCc--cCCCCCCCCCCCceeeeec
Q 006635 181 QIENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMCKEDDAP--DPVINSCNGFY--CDAFSPNKPYKPTLWTEAW 256 (637)
Q Consensus 181 QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~~~~~p--~~vi~~~ng~~--~~~~~~~~~~~P~~~tE~~ 256 (637)
-+-||-+. + . .++.+.+.+++++-.-|.. +.+.... ..++...-+.+ +..+....+.+|.+.+|+-
T Consensus 445 slGNE~~~-----g---~-~~~~~~~~~k~~DptR~v~-~~~~~~~~~~Dv~~~~Y~~~~~~~~~~~~~~~kP~i~~Ey~ 514 (1021)
T PRK10340 445 SLGNESGY-----G---C-NIRAMYHAAKALDDTRLVH-YEEDRDAEVVDVISTMYTRVELMNEFGEYPHPKPRILCEYA 514 (1021)
T ss_pred ECccCccc-----c---H-HHHHHHHHHHHhCCCceEE-eCCCcCccccceeccccCCHHHHHHHHhCCCCCcEEEEchH
Confidence 99999753 2 2 2356777788877666653 3332111 11221111111 1122233457999999984
Q ss_pred cccccccCCCccCCCHHHHHHHHHHH--H----------------HhCCeeeeeeEeecCCCCCCCCCCCcccccccCCC
Q 006635 257 SGWFTEFGGAVHRRPVQDLAFAVARF--I----------------QKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDA 318 (637)
Q Consensus 257 ~Gwf~~wG~~~~~r~~~d~a~~~~~~--~----------------~~g~s~~nyYM~hGGTNfG~~~G~~~~~tSYDy~A 318 (637)
.+. |... ...++.-..+.+. + ..+|. -|+.+|| .||-+. -..++--+.
T Consensus 515 ham----gn~~--g~~~~yw~~~~~~p~l~GgfiW~~~D~~~~~~~~~G~---~~~~ygG-d~g~~p----~~~~f~~~G 580 (1021)
T PRK10340 515 HAM----GNGP--GGLTEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDNGN---VWYKYGG-DYGDYP----NNYNFCIDG 580 (1021)
T ss_pred hcc----CCCC--CCHHHHHHHHHhCCceeEEeeeecCcccccccCCCCC---EEEEECC-CCCCCC----CCcCcccce
Confidence 322 1100 0112211111110 0 01111 2455666 355331 012233346
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHH
Q 006635 319 PLDEYGLMRQPKYGHLKQLHEAIK 342 (637)
Q Consensus 319 pl~E~G~~~~pky~~lk~lh~~l~ 342 (637)
-++.+|.+ .|.+.+.|.+.+-++
T Consensus 581 lv~~dr~p-~p~~~e~k~~~~pv~ 603 (1021)
T PRK10340 581 LIYPDQTP-GPGLKEYKQVIAPVK 603 (1021)
T ss_pred eECCCCCC-ChhHHHHHHhcceEE
Confidence 68889988 599999999876655
No 10
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=98.99 E-value=1.1e-08 Score=123.80 Aligned_cols=150 Identities=21% Similarity=0.220 Sum_probs=107.4
Q ss_pred eeEEEccCcEEECCEEeEEEEEEeeC--C----CCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHH
Q 006635 27 STVTYDRKAILINGQRRILISGSIHY--P----RSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLV 100 (637)
Q Consensus 27 ~~v~~d~~~l~idG~~~~l~sG~~Hy--~----r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~ 100 (637)
++|+++++.|+|||+|+++-+...|- + +.+++.++++|+.||++|+|+|++ .|-|.. .
T Consensus 334 R~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~-----sHyP~~-----------p 397 (1027)
T PRK09525 334 RKVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC-----SHYPNH-----------P 397 (1027)
T ss_pred EEEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCCC-----------H
Confidence 45778888999999999999999983 2 358999999999999999999999 576654 7
Q ss_pred HHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEc
Q 006635 101 RFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILS 180 (637)
Q Consensus 101 ~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~ 180 (637)
+|+++|.|+||+|+-... . | ..|-.|.. . -.++|.|++++..=+++++.+.+ |...||+|
T Consensus 398 ~fydlcDe~GilV~dE~~-~---e-~hg~~~~~---~-----~~~dp~~~~~~~~~~~~mV~Rdr-------NHPSIi~W 457 (1027)
T PRK09525 398 LWYELCDRYGLYVVDEAN-I---E-THGMVPMN---R-----LSDDPRWLPAMSERVTRMVQRDR-------NHPSIIIW 457 (1027)
T ss_pred HHHHHHHHcCCEEEEecC-c---c-ccCCcccc---C-----CCCCHHHHHHHHHHHHHHHHhCC-------CCCEEEEE
Confidence 899999999999998852 1 1 11111210 0 13567776665444444444444 55689999
Q ss_pred cccccccCCccccCcccHHHHHHHHHHHhcCCCCcceeeec
Q 006635 181 QIENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMCK 221 (637)
Q Consensus 181 QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~ 221 (637)
-+-||-+. + ...+.+.+.+++++-.-|.....
T Consensus 458 SlgNE~~~-----g----~~~~~l~~~~k~~DptRpV~y~~ 489 (1027)
T PRK09525 458 SLGNESGH-----G----ANHDALYRWIKSNDPSRPVQYEG 489 (1027)
T ss_pred eCccCCCc-----C----hhHHHHHHHHHhhCCCCcEEECC
Confidence 99999763 2 12455667777777777766543
No 11
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=98.97 E-value=1.3e-08 Score=119.60 Aligned_cols=120 Identities=22% Similarity=0.315 Sum_probs=98.8
Q ss_pred eeEEEccCcEEECCEEeEEEEEEeeCC-----CC-CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHH
Q 006635 27 STVTYDRKAILINGQRRILISGSIHYP-----RS-TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLV 100 (637)
Q Consensus 27 ~~v~~d~~~l~idG~~~~l~sG~~Hy~-----r~-~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~ 100 (637)
++|++++..|.|||||+++-+..-|.. |. ..+.-+++|++||++|+|+|+| .|-|.. .
T Consensus 284 R~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRt-----sHyP~~-----------~ 347 (808)
T COG3250 284 RTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRT-----SHYPNS-----------E 347 (808)
T ss_pred EEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEe-----cCCCCC-----------H
Confidence 668999999999999999999999953 33 4454889999999999999999 388887 8
Q ss_pred HHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEc
Q 006635 101 RFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILS 180 (637)
Q Consensus 101 ~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~ 180 (637)
.|++||.+.||+||-.+ ..||.. +| +++.|++.+..=++++++..|.|| .||||
T Consensus 348 ~~ydLcDelGllV~~Ea----~~~~~~--~~-------------~~~~~~k~~~~~i~~mver~knHP-------SIiiW 401 (808)
T COG3250 348 EFYDLCDELGLLVIDEA----MIETHG--MP-------------DDPEWRKEVSEEVRRMVERDRNHP-------SIIIW 401 (808)
T ss_pred HHHHHHHHhCcEEEEec----chhhcC--CC-------------CCcchhHHHHHHHHHHHHhccCCC-------cEEEE
Confidence 99999999999999986 334332 22 788888888777777777777554 89999
Q ss_pred cccccccC
Q 006635 181 QIENEYGP 188 (637)
Q Consensus 181 QIENEyg~ 188 (637)
-+.||-|.
T Consensus 402 s~gNE~~~ 409 (808)
T COG3250 402 SLGNESGH 409 (808)
T ss_pred eccccccC
Confidence 99999874
No 12
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.88 E-value=7.6e-09 Score=94.10 Aligned_cols=86 Identities=28% Similarity=0.383 Sum_probs=61.8
Q ss_pred cchhhhcccCCccceEEEEEEEEecCCcccccCCCccE-EEE-ccCccEEEEEECCEEEEEEECCcccceeEEEeeE-Ee
Q 006635 458 GLLEQINITRDTSDYLWYMTSVEISSSESFLRGGQKPT-LTV-ESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPA-NL 534 (637)
Q Consensus 458 ~~lEq~~~TkD~sdYlWY~t~v~v~~~~~~~~~~~~~~-L~v-~s~~h~~~VfVNG~~iGs~~g~~~~~~f~f~~~i-~L 534 (637)
.+++..+.+++++|++||+++|+....+. ... |.+ .+.+|+++|||||+++|+..+. ..++.+|+.|. .|
T Consensus 22 ~~~l~~~~~g~~~g~~~Yrg~F~~~~~~~------~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~-~g~q~tf~~p~~il 94 (111)
T PF13364_consen 22 GPVLYASDYGFHAGYLWYRGTFTGTGQDT------SLTPLNIQGGNAFRASVWVNGWFLGSYWPG-IGPQTTFSVPAGIL 94 (111)
T ss_dssp SSSTCCGCGTSSSCEEEEEEEEETTTEEE------EEE-EEECSSTTEEEEEEETTEEEEEEETT-TECCEEEEE-BTTB
T ss_pred CceeccCccccCCCCEEEEEEEeCCCcce------eEEEEeccCCCceEEEEEECCEEeeeecCC-CCccEEEEeCceee
Confidence 45788899999999999999997543321 223 444 3679999999999999999943 22334555554 36
Q ss_pred eccccEEEEEEecccc
Q 006635 535 RAGINKIALLSIAVGL 550 (637)
Q Consensus 535 ~~G~N~IslLs~tvGl 550 (637)
+.+.|.|++|+.++|.
T Consensus 95 ~~~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 95 KYGNNVLVVLWDNMGH 110 (111)
T ss_dssp TTCEEEEEEEEE-STT
T ss_pred cCCCEEEEEEEeCCCC
Confidence 6677788999999985
No 13
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.86 E-value=2.9e-08 Score=101.78 Aligned_cols=161 Identities=19% Similarity=0.263 Sum_probs=109.6
Q ss_pred CCEEeEEEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCC-CCCce-eeecCcccHHHHHHHHHHcCCEEEEe
Q 006635 39 NGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHE-PSPGH-YNFEGSYDLVRFIKTVQRVGLYAHLR 116 (637)
Q Consensus 39 dG~~~~l~sG~~Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hE-p~~G~-ydF~g~~dL~~fl~la~~~GL~vilr 116 (637)
+|+++.+.+-+.|... +..-++.+++||++|+|+||+.|.|...+ |.|+. ++=+.-..|+++|+.|+++||+|||.
T Consensus 4 ~G~~v~~~G~n~~w~~--~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild 81 (281)
T PF00150_consen 4 NGKPVNWRGFNTHWYN--PSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILD 81 (281)
T ss_dssp TSEBEEEEEEEETTSG--GGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCeEEeeeeecccCC--CCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 6899999999999322 12677899999999999999999995555 67664 66666679999999999999999998
Q ss_pred cCceeeeecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEccccccccCCccc--cC
Q 006635 117 IGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKS--LG 194 (637)
Q Consensus 117 ~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~--~~ 194 (637)
+ ++. |.|....... ...+...+...++++.|++.+|. ..+|++++|=||....... ..
T Consensus 82 ~----h~~------~~w~~~~~~~---~~~~~~~~~~~~~~~~la~~y~~-------~~~v~~~el~NEP~~~~~~~~w~ 141 (281)
T PF00150_consen 82 L----HNA------PGWANGGDGY---GNNDTAQAWFKSFWRALAKRYKD-------NPPVVGWELWNEPNGGNDDANWN 141 (281)
T ss_dssp E----EES------TTCSSSTSTT---TTHHHHHHHHHHHHHHHHHHHTT-------TTTTEEEESSSSGCSTTSTTTTS
T ss_pred e----ccC------cccccccccc---ccchhhHHHHHhhhhhhccccCC-------CCcEEEEEecCCccccCCccccc
Confidence 6 221 6774322111 12233344455566666666653 3479999999999864211 10
Q ss_pred ----cccHHHHHHHHHHHhcCCCCcceeeec
Q 006635 195 ----AAGHAYVNWAAKMAVGLDTGVPWVMCK 221 (637)
Q Consensus 195 ----~~~~~y~~~l~~~~~~~g~~vP~~~~~ 221 (637)
..-.++.+.+.+..|+.+.+.+++...
T Consensus 142 ~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 142 AQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred cccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 112456666666777888887766544
No 14
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.21 E-value=6.2e-06 Score=95.33 Aligned_cols=103 Identities=22% Similarity=0.252 Sum_probs=75.2
Q ss_pred CCccceEEEEEEEEecCCcccccCCCccEEEEccCccEEEEEECCEEEEEEECCcccceeEEEeeEEeecccc-EEEEEE
Q 006635 467 RDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGIN-KIALLS 545 (637)
Q Consensus 467 kD~sdYlWY~t~v~v~~~~~~~~~~~~~~L~v~s~~h~~~VfVNG~~iGs~~g~~~~~~f~f~~~i~L~~G~N-~IslLs 545 (637)
++..|..||+++|+++.. +.+++..|+|+.+...+.|||||++||.+.|+.. .|.|+..-.|+.|.| +|+|.+
T Consensus 61 ~~~~G~~WYrr~f~lp~~----~~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~~--~f~~DIT~~l~~G~~n~L~V~v 134 (604)
T PRK10150 61 RNYVGDVWYQREVFIPKG----WAGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGYT--PFEADITPYVYAGKSVRITVCV 134 (604)
T ss_pred cCCcccEEEEEEEECCcc----cCCCEEEEEECcccceEEEEECCEEeeeEcCCcc--ceEEeCchhccCCCceEEEEEE
Confidence 456788999999999754 4567899999999999999999999999998742 244443325788875 999998
Q ss_pred ecccc---ccccC-------------cce-eeeceeeeEEEEeecCC
Q 006635 546 IAVGL---PNVGL-------------HYE-TWETGVRGAVVLHGLDH 575 (637)
Q Consensus 546 ~tvGl---~n~G~-------------~~e-~~~aGI~g~V~l~g~~~ 575 (637)
.+.-. ...|. .++ ....||.++|.|.-.+.
T Consensus 135 ~n~~~~~~~p~g~~~~~~~~~~k~~~~~d~~~~~GI~r~V~L~~~~~ 181 (604)
T PRK10150 135 NNELNWQTLPPGNVIEDGNGKKKQKYNFDFFNYAGIHRPVMLYTTPK 181 (604)
T ss_pred ecCCCcccCCCCccccCCccccccccccccccccCCCceEEEEEcCC
Confidence 65210 00111 123 46899999999976544
No 15
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.19 E-value=2.2e-05 Score=82.98 Aligned_cols=157 Identities=14% Similarity=0.158 Sum_probs=88.8
Q ss_pred cccceeEEEccCcEE--ECCEEeEEEEEEeeCCC-----------CCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCc
Q 006635 23 LIQCSTVTYDRKAIL--INGQRRILISGSIHYPR-----------STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPG 89 (637)
Q Consensus 23 ~~~~~~v~~d~~~l~--idG~~~~l~sG~~Hy~r-----------~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G 89 (637)
...-..|+..++.|. .+|++|+|.+-.+.+.. ..++.|.+++..||++|+|||++| ...|..
T Consensus 5 ~~~~~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY----~vdp~~- 79 (314)
T PF03198_consen 5 AAAVPPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVY----SVDPSK- 79 (314)
T ss_dssp STTS--EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES-------TTS-
T ss_pred hccCCCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEE----EeCCCC-
Confidence 344467888999998 78999998887776522 357889999999999999999997 334433
Q ss_pred eeeecCcccHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCeeeecCCh--hhHHHHHHHHHHHHHHHHhc
Q 006635 90 HYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNG--PFKVAMQGFTQKIVQMMKNE 167 (637)
Q Consensus 90 ~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~--~y~~~~~~~~~~i~~~l~~~ 167 (637)
|=++++++.+++|+||||..+. |...+...+| .|-...-.-+.++++.++++
T Consensus 80 --------nHd~CM~~~~~aGIYvi~Dl~~------------------p~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y 133 (314)
T PF03198_consen 80 --------NHDECMSAFADAGIYVILDLNT------------------PNGSINRSDPAPSWNTDLLDRYFAVIDAFAKY 133 (314)
T ss_dssp ----------HHHHHHHHHTT-EEEEES-B------------------TTBS--TTS------HHHHHHHHHHHHHHTT-
T ss_pred --------CHHHHHHHHHhCCCEEEEecCC------------------CCccccCCCCcCCCCHHHHHHHHHHHHHhccC
Confidence 6799999999999999999752 2222333444 44433334455667778855
Q ss_pred cccccCCCceEEccccccccCCccccC--cccHHHHHHHHHHHhcCCC-Ccce
Q 006635 168 KLFASQGGPIILSQIENEYGPESKSLG--AAGHAYVNWAAKMAVGLDT-GVPW 217 (637)
Q Consensus 168 ~l~~~~gGpII~~QIENEyg~~~~~~~--~~~~~y~~~l~~~~~~~g~-~vP~ 217 (637)
+ +++++=+-||.-+-...-. +.-|+.++-+|+-.++.+. .+|.
T Consensus 134 ~-------N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPV 179 (314)
T PF03198_consen 134 D-------NTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPV 179 (314)
T ss_dssp T-------TEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----E
T ss_pred C-------ceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 4 7999999999865321111 1234555555555555554 3454
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.10 E-value=8.6e-06 Score=84.17 Aligned_cols=117 Identities=21% Similarity=0.344 Sum_probs=89.1
Q ss_pred CCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHH
Q 006635 81 WNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKI 160 (637)
Q Consensus 81 Wn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i 160 (637)
|...||+||+|||+ .++++++.|+++||.| |..+.+ |-. ..|.|+...+ .+..++++++|++.+
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTLV---WHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 88999999999999 7999999999999998 332222 433 6899987533 345677888888888
Q ss_pred HHHHHhccccccCCCceEEccccccccCCcc------cc-CcccHHHHHHHHHHHhcCCCCcceeeecC
Q 006635 161 VQMMKNEKLFASQGGPIILSQIENEYGPESK------SL-GAAGHAYVNWAAKMAVGLDTGVPWVMCKE 222 (637)
Q Consensus 161 ~~~l~~~~l~~~~gGpII~~QIENEyg~~~~------~~-~~~~~~y~~~l~~~~~~~g~~vP~~~~~~ 222 (637)
+.+++ |.|..++|=||--+... .+ ...+.+|+..+-+.|++.+-++.++.++.
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy 126 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDY 126 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEecc
Confidence 88776 45889999999543210 11 12356899999999999998999998764
No 17
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.01 E-value=1.9e-05 Score=96.35 Aligned_cols=96 Identities=21% Similarity=0.303 Sum_probs=72.7
Q ss_pred ceEEEEEEEEecCCcccccCCCccEEEEccCccEEEEEECCEEEEEEECCcccceeEEEeeEEeeccccEEEEEEecccc
Q 006635 471 DYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGL 550 (637)
Q Consensus 471 dYlWY~t~v~v~~~~~~~~~~~~~~L~v~s~~h~~~VfVNG~~iGs~~g~~~~~~f~f~~~i~L~~G~N~IslLs~tvGl 550 (637)
+-.||+++|++++. +.+++..|+|+.+...+.|||||++||.+.|+.. .|.|+..-.|+.|.|.|+|.+..-.
T Consensus 109 ~~g~Yrr~F~lp~~----~~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~~--pfefDIT~~l~~G~N~LaV~V~~~~- 181 (1021)
T PRK10340 109 PTGAYQRTFTLSDG----WQGKQTIIKFDGVETYFEVYVNGQYVGFSKGSRL--TAEFDISAMVKTGDNLLCVRVMQWA- 181 (1021)
T ss_pred CeEEEEEEEEeCcc----cccCcEEEEECccceEEEEEECCEEeccccCCCc--cEEEEcchhhCCCccEEEEEEEecC-
Confidence 34699999999865 4577899999999999999999999999997742 2444433257889999999886432
Q ss_pred ccccCcce----eeeceeeeEEEEeecCC
Q 006635 551 PNVGLHYE----TWETGVRGAVVLHGLDH 575 (637)
Q Consensus 551 ~n~G~~~e----~~~aGI~g~V~l~g~~~ 575 (637)
-|.+.| .+..||.|+|.|.-.+.
T Consensus 182 --d~s~le~qd~w~~sGI~R~V~L~~~p~ 208 (1021)
T PRK10340 182 --DSTYLEDQDMWWLAGIFRDVYLVGKPL 208 (1021)
T ss_pred --CCCccccCCccccccccceEEEEEeCC
Confidence 122322 35799999999976543
No 18
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=97.97 E-value=2.8e-05 Score=94.85 Aligned_cols=96 Identities=21% Similarity=0.256 Sum_probs=71.1
Q ss_pred ceEEEEEEEEecCCcccccCCC-ccEEEEccCccEEEEEECCEEEEEEECCcccceeEEEeeEEeeccccEEEEEEeccc
Q 006635 471 DYLWYMTSVEISSSESFLRGGQ-KPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVG 549 (637)
Q Consensus 471 dYlWY~t~v~v~~~~~~~~~~~-~~~L~v~s~~h~~~VfVNG~~iGs~~g~~~~~~f~f~~~i~L~~G~N~IslLs~tvG 549 (637)
+-.||+++|+++.+ +.++ +..|+|+.+...+.|||||+++|.+.|+. ..|.|+..-.|+.|.|.|+|.+..-
T Consensus 120 ~~gwYrr~F~vp~~----w~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~L~V~V~~~- 192 (1027)
T PRK09525 120 PTGCYSLTFTVDES----WLQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDSR--LPAEFDLSPFLRAGENRLAVMVLRW- 192 (1027)
T ss_pred CeEEEEEEEEeChh----hcCCCeEEEEECeeccEEEEEECCEEEEeecCCC--ceEEEEChhhhcCCccEEEEEEEec-
Confidence 45799999999865 3344 78999999999999999999999998764 2244543335888999999887431
Q ss_pred cccccCcce----eeeceeeeEEEEeecCC
Q 006635 550 LPNVGLHYE----TWETGVRGAVVLHGLDH 575 (637)
Q Consensus 550 l~n~G~~~e----~~~aGI~g~V~l~g~~~ 575 (637)
.-|.+++ .+..||.++|.|.-.+.
T Consensus 193 --sdgs~~e~qd~w~~sGI~R~V~L~~~p~ 220 (1027)
T PRK09525 193 --SDGSYLEDQDMWRMSGIFRDVSLLHKPT 220 (1027)
T ss_pred --CCCCccccCCceeeccccceEEEEEcCC
Confidence 1122322 46799999999966543
No 19
>PLN02705 beta-amylase
Probab=97.97 E-value=2.2e-05 Score=88.31 Aligned_cols=115 Identities=18% Similarity=0.289 Sum_probs=83.8
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCC-CCceeeecCcccHHHHHHHHHHcCCEEEEecCceeeeecCCC-----C
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-SPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFG-----G 129 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp-~~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~G-----G 129 (637)
.++.-+..|+++|++|++.|.+-|.|...|. .|++|||+| ..+++++|+++||++.+-.-=.-||- +-| -
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSFHqCGG-NVGD~~~IP 341 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAFHEYGG-NASGNVMIS 341 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEeeccCC-CCCCccccc
Confidence 4566788999999999999999999999998 699999997 78889999999999754433345665 333 3
Q ss_pred CCccccc----CCCeeeec--------------CC----------hhhHHHHHHHHHHHHHHHHhccccccCCCceEEcc
Q 006635 130 FPVWLKY----VPGISFRT--------------DN----------GPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQ 181 (637)
Q Consensus 130 ~P~WL~~----~p~i~~Rt--------------~~----------~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~Q 181 (637)
||.|+.+ .|+|.+.. |+ +.|.+.|+.|-..+.+.|. +|.|.-+|
T Consensus 342 LP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~--------~g~I~eI~ 413 (681)
T PLN02705 342 LPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLFV--------EGLITAVE 413 (681)
T ss_pred CCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhcc--------CCceeEEE
Confidence 8999875 46764321 11 3466666666555544443 46788787
Q ss_pred c
Q 006635 182 I 182 (637)
Q Consensus 182 I 182 (637)
|
T Consensus 414 V 414 (681)
T PLN02705 414 I 414 (681)
T ss_pred e
Confidence 7
No 20
>PLN02905 beta-amylase
Probab=97.94 E-value=2.8e-05 Score=87.76 Aligned_cols=115 Identities=22% Similarity=0.411 Sum_probs=84.6
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCC-CCceeeecCcccHHHHHHHHHHcCCEEEEecCceeeeecCCC-----C
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-SPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFG-----G 129 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp-~~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~G-----G 129 (637)
.++.-+..|+++|++|++.|.+-|.|...|. .|++|||+| ..+++++|+++||++..-.-=.-||- +-| -
T Consensus 284 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSFHqCGG-NVGD~~~IP 359 (702)
T PLN02905 284 DPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSFHECGG-NVGDDVCIP 359 (702)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 4555678899999999999999999999998 699999997 78889999999999754433344555 323 3
Q ss_pred CCccccc----CCCeeeec------------------------CChhhHHHHHHHHHHHHHHHHhccccccCCCceEEcc
Q 006635 130 FPVWLKY----VPGISFRT------------------------DNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQ 181 (637)
Q Consensus 130 ~P~WL~~----~p~i~~Rt------------------------~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~Q 181 (637)
||.|+.+ .|+|.+.. --+.|.+.|+.|-..+.+.|. +|.|.-+|
T Consensus 360 LP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~--------~g~I~eI~ 431 (702)
T PLN02905 360 LPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFFE--------DGVISMVE 431 (702)
T ss_pred CCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHhc--------CCceEEEE
Confidence 8999875 57764321 113466666666666655553 36788887
Q ss_pred c
Q 006635 182 I 182 (637)
Q Consensus 182 I 182 (637)
|
T Consensus 432 V 432 (702)
T PLN02905 432 V 432 (702)
T ss_pred e
Confidence 7
No 21
>PLN02801 beta-amylase
Probab=97.93 E-value=3.1e-05 Score=85.90 Aligned_cols=82 Identities=26% Similarity=0.488 Sum_probs=65.7
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCC-CCceeeecCcccHHHHHHHHHHcCCEEEEecCceeeeecCCC-----C
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-SPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFG-----G 129 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp-~~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~G-----G 129 (637)
.++.-+..|+++|++|++.|.+-|-|...|. .|++|||+| ..+++++|+++||++..-..=.-||- +-| -
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NVGD~~~Ip 110 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSFHQCGG-NVGDAVNIP 110 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 5667889999999999999999999999998 599999997 78889999999999754433344554 222 3
Q ss_pred CCccccc----CCCee
Q 006635 130 FPVWLKY----VPGIS 141 (637)
Q Consensus 130 ~P~WL~~----~p~i~ 141 (637)
+|.|+.+ +|+|.
T Consensus 111 LP~WV~~~g~~~pDi~ 126 (517)
T PLN02801 111 IPQWVRDVGDSDPDIF 126 (517)
T ss_pred CCHHHHHhhccCCCce
Confidence 8999874 57764
No 22
>PLN00197 beta-amylase; Provisional
Probab=97.88 E-value=4.1e-05 Score=85.63 Aligned_cols=83 Identities=25% Similarity=0.507 Sum_probs=66.6
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCC-CCceeeecCcccHHHHHHHHHHcCCEEEEecCceeeeecCCC-----C
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-SPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFG-----G 129 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp-~~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~G-----G 129 (637)
.++.-+..|+++|++|++-|.+-|.|...|. .|++|||+| ..+++++|+++||++.+-..=.-||- +-| -
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSFHqCGG-NVGD~~~Ip 200 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSFHQCGG-NVGDSCTIP 200 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 5667788999999999999999999999998 799999997 78889999999999754433344555 323 3
Q ss_pred CCccccc----CCCeee
Q 006635 130 FPVWLKY----VPGISF 142 (637)
Q Consensus 130 ~P~WL~~----~p~i~~ 142 (637)
+|.|+.+ +|+|.+
T Consensus 201 LP~WV~~~g~~dpDiff 217 (573)
T PLN00197 201 LPKWVVEEVDKDPDLAY 217 (573)
T ss_pred CCHHHHHhhccCCCcee
Confidence 8999875 577644
No 23
>PLN02161 beta-amylase
Probab=97.86 E-value=5.1e-05 Score=84.25 Aligned_cols=83 Identities=19% Similarity=0.355 Sum_probs=65.7
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCC-CCceeeecCcccHHHHHHHHHHcCCEEEEecCceeeeecCCC-----C
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-SPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFG-----G 129 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp-~~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~G-----G 129 (637)
.++.-+..|+++|++|++.|.+-|-|...|. .|++|||+| ..+++++++++||++.+-..=.-||- +-| -
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NvGd~~~Ip 190 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMH-LFGGKGGIS 190 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccCcc
Confidence 4555678899999999999999999999998 799999997 78889999999999754443344544 222 2
Q ss_pred CCccccc----CCCeee
Q 006635 130 FPVWLKY----VPGISF 142 (637)
Q Consensus 130 ~P~WL~~----~p~i~~ 142 (637)
+|.|+.+ +|+|.+
T Consensus 191 LP~WV~~~g~~~pDi~f 207 (531)
T PLN02161 191 LPLWIREIGDVNKDIYY 207 (531)
T ss_pred CCHHHHhhhccCCCceE
Confidence 7999875 577654
No 24
>TIGR03356 BGL beta-galactosidase.
Probab=97.85 E-value=3.6e-05 Score=85.62 Aligned_cols=97 Identities=15% Similarity=0.184 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCC-CceeeecCcccHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccc
Q 006635 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (637)
Q Consensus 58 ~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~-~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~~ 136 (637)
..|+++|+.||++|+|++++-|.|...+|. +|++|.+|-...+++|+.|.++||.+|+-.= .=.+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~--------Hfd~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY--------HWDLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec--------cCCccHHHHh
Confidence 568999999999999999999999999999 7999988888999999999999999887752 2358999976
Q ss_pred CCCeeeecCChhhHHHHHHHHHHHHHHHHh
Q 006635 137 VPGISFRTDNGPFKVAMQGFTQKIVQMMKN 166 (637)
Q Consensus 137 ~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~ 166 (637)
..+- .++...++..+|.+.+++.+++
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~d 151 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLGD 151 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhCC
Confidence 5443 3466667777777777777774
No 25
>PLN02803 beta-amylase
Probab=97.84 E-value=5.3e-05 Score=84.51 Aligned_cols=83 Identities=23% Similarity=0.511 Sum_probs=65.8
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCC-CCceeeecCcccHHHHHHHHHHcCCEEEEecCceeeeecCCC-----C
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-SPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFG-----G 129 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp-~~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~G-----G 129 (637)
.++.-+..|+++|++|++-|.+-|.|...|. .|++|||+| ..+++++|+++||++..-.-=.-||- +-| -
T Consensus 105 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NVGD~~~Ip 180 (548)
T PLN02803 105 KPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSFHQCGG-NVGDSCSIP 180 (548)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 4556678999999999999999999999999 599999997 78889999999999754433344554 223 3
Q ss_pred CCccccc----CCCeee
Q 006635 130 FPVWLKY----VPGISF 142 (637)
Q Consensus 130 ~P~WL~~----~p~i~~ 142 (637)
+|.|+.+ +|+|.+
T Consensus 181 LP~WV~e~~~~~pDi~f 197 (548)
T PLN02803 181 LPPWVLEEMSKNPDLVY 197 (548)
T ss_pred CCHHHHHhhhcCCCceE
Confidence 8999875 577644
No 26
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.74 E-value=0.00069 Score=71.65 Aligned_cols=230 Identities=23% Similarity=0.338 Sum_probs=112.6
Q ss_pred cCcEE-ECCEEeEEEEEEeeC---CCCCHhHHHHHHHHHHHCCCCEEEEccc--CCcC--------CC----CCceeeec
Q 006635 33 RKAIL-INGQRRILISGSIHY---PRSTPEMWEDLIRKAKDGGLDVIDTYVF--WNGH--------EP----SPGHYNFE 94 (637)
Q Consensus 33 ~~~l~-idG~~~~l~sG~~Hy---~r~~~~~W~~~l~k~K~~G~N~I~~yvf--Wn~h--------Ep----~~G~ydF~ 94 (637)
++.|. -||+|++.++ .-.+ .|...++|+.-|+..|+-|||+|++=|+ |..+ .| .++++||+
T Consensus 2 ~r~f~~~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~ 80 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFT 80 (289)
T ss_dssp SSSEEETTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------T
T ss_pred CceEecCCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCC
Confidence 56777 7999999998 5554 4568899999999999999999999877 5432 12 12236776
Q ss_pred Cc-----ccHHHHHHHHHHcCCEEEEec---CceeeeecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHh
Q 006635 95 GS-----YDLVRFIKTVQRVGLYAHLRI---GPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKN 166 (637)
Q Consensus 95 g~-----~dL~~fl~la~~~GL~vilr~---GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~ 166 (637)
.- ..|++.|+.|.+.||.+.|-| +||.-+-|-.| | +.+ =.+.+++|.+.|++.++.
T Consensus 81 ~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--~------~~m--------~~e~~~~Y~~yv~~Ry~~ 144 (289)
T PF13204_consen 81 RPNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--P------NIM--------PPENAERYGRYVVARYGA 144 (289)
T ss_dssp T----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------T------TSS---------HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--c------cCC--------CHHHHHHHHHHHHHHHhc
Confidence 53 489999999999999985433 33433444332 1 111 136788999999999996
Q ss_pred ccccccCCCceEEccccccccCCccccCcccHHHHHHHHHHHhcCCCCcc-eeeecCC-CCCC-----cc--ccC-CCCC
Q 006635 167 EKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVP-WVMCKED-DAPD-----PV--INS-CNGF 236 (637)
Q Consensus 167 ~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP-~~~~~~~-~~p~-----~v--i~~-~ng~ 236 (637)
.+ +|| +=|-||+ . ......++.+.+.+..++.+-.-| -++..+. ..++ +- +.+ .+|.
T Consensus 145 ~~-------Nvi-W~l~gd~-~----~~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsgh 211 (289)
T PF13204_consen 145 YP-------NVI-WILGGDY-F----DTEKTRADWDAMARGIKENDPYQLITIHPCGRTSSPDWFHDEPWLDFNMYQSGH 211 (289)
T ss_dssp -S-------SEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS-EEEEE-BTEBTHHHHTT-TT--SEEEB--S
T ss_pred CC-------CCE-EEecCcc-C----CCCcCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCcchhhcCCCcceEEEeecCC
Confidence 53 355 5688888 1 123455666666666665433222 2222221 1111 10 111 1222
Q ss_pred cc---CC-------CC-CCCCCCCceeeee-ccccccccCCCccCCCHHHHHHHHHHHHHhCC-eeeee
Q 006635 237 YC---DA-------FS-PNKPYKPTLWTEA-WSGWFTEFGGAVHRRPVQDLAFAVARFIQKGG-SFFNY 292 (637)
Q Consensus 237 ~~---~~-------~~-~~~~~~P~~~tE~-~~Gwf~~wG~~~~~r~~~d~a~~~~~~~~~g~-s~~ny 292 (637)
.. +. .. ...|.||.+..|- +.|.-..+.+.....+++|+-...=.-+-.|+ .-+.|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa~aG~tY 280 (289)
T PF13204_consen 212 NRYDQDNWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGAYAGHTY 280 (289)
T ss_dssp --TT--THHHH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT--SEEEE
T ss_pred CcccchHHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCCCccccC
Confidence 11 11 11 4578999999995 44443332223344577777665545555666 44343
No 27
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.37 E-value=0.00013 Score=79.59 Aligned_cols=113 Identities=21% Similarity=0.390 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCcCCCC-CceeeecCcccHHHHHHHHHHcCCEEEEecCceeeeecCCC-----CCCc
Q 006635 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFG-----GFPV 132 (637)
Q Consensus 59 ~W~~~l~k~K~~G~N~I~~yvfWn~hEp~-~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~G-----G~P~ 132 (637)
.-+..|+++|++|++.|.+.|-|...|.. |++|||+| .++++++|+++||++.+-.-=.-||- +-| -+|.
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGg-NvgD~~~IpLP~ 92 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGG-NVGDDCNIPLPS 92 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSS-STTSSSEB-S-H
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCC-CCCCccCCcCCH
Confidence 45678999999999999999999999997 99999996 78889999999999755433334432 212 4799
Q ss_pred cccc---CCCeeeec--------------CChhhHHHHHHHHHHHHHHHHhccccccCCCceEEccc
Q 006635 133 WLKY---VPGISFRT--------------DNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQI 182 (637)
Q Consensus 133 WL~~---~p~i~~Rt--------------~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QI 182 (637)
|+.+ ..+|.+.. .... ++.-+.|++...+.++ .++ +.|..+||
T Consensus 93 Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~--~~~----~~I~~I~v 152 (402)
T PF01373_consen 93 WVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFS--DYL----STITEIQV 152 (402)
T ss_dssp HHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCH--HHH----TGEEEEEE
T ss_pred HHHhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHH--HHH----hhheEEEe
Confidence 9964 12543211 1112 4444555666666665 332 56777776
No 28
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=97.23 E-value=0.0012 Score=69.97 Aligned_cols=133 Identities=20% Similarity=0.287 Sum_probs=102.3
Q ss_pred HHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCeeeecCC
Q 006635 67 AKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDN 146 (637)
Q Consensus 67 ~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~ 146 (637)
+|+.+.=|-+.-.=|+..||++|.|+|+. -+++.+.|+++||.+.=. +.| |.+ -.|.|+..+. -.-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe~---AD~ia~FAr~h~m~lhGH--tLv---W~~-q~P~W~~~~e-----~~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFEA---ADAIANFARKHNMPLHGH--TLV---WHS-QVPDWLFGDE-----LSK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCccc---hHHHHHHHHHcCCeeccc--eee---ecc-cCCchhhccc-----cCh
Confidence 66666666666677999999999999994 689999999999976322 222 433 6899997643 245
Q ss_pred hhhHHHHHHHHHHHHHHHHhccccccCCCceEEccccccccCCc-------cccCcccHHHHHHHHHHHhcCCCCcceee
Q 006635 147 GPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPES-------KSLGAAGHAYVNWAAKMAVGLDTGVPWVM 219 (637)
Q Consensus 147 ~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~-------~~~~~~~~~y~~~l~~~~~~~g~~vP~~~ 219 (637)
++..+.|++++..++.+.+ |-|+.|-|=||-=.-. +..+..+.+|+++.-+.|++.+-+--++.
T Consensus 121 ~~~~~~~e~hI~tV~~rYk---------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 121 EALAKMVEEHIKTVVGRYK---------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHHHHHhcc---------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 7889999999999999998 3489999999963311 12223678999999999999888877888
Q ss_pred ecC
Q 006635 220 CKE 222 (637)
Q Consensus 220 ~~~ 222 (637)
++.
T Consensus 192 NDY 194 (345)
T COG3693 192 NDY 194 (345)
T ss_pred ecc
Confidence 876
No 29
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.06 E-value=0.00097 Score=71.51 Aligned_cols=158 Identities=17% Similarity=0.298 Sum_probs=109.7
Q ss_pred EEEEEeeCCCCCHh-HHHHHHHHHHHCCCCEEEEc--ccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEecCcee
Q 006635 45 LISGSIHYPRSTPE-MWEDLIRKAKDGGLDVIDTY--VFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYV 121 (637)
Q Consensus 45 l~sG~~Hy~r~~~~-~W~~~l~k~K~~G~N~I~~y--vfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi 121 (637)
.++.+++..+...+ ..++.+ ..-||.|..- .-|...||++|+|||+ ..+++++.|+++||.|--.+ -+
T Consensus 11 ~~G~av~~~~~~~~~~~~~~~----~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~--Lv 81 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDPRYRELF----AKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT--LV 81 (320)
T ss_dssp EEEEEEBGGGHTHHHHHHHHH----HHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE--EE
T ss_pred CEEEEechhHcCCcHHHHHHH----HHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee--EE
Confidence 68899998877554 444444 4568888874 5699999999999999 79999999999999985331 11
Q ss_pred eeecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEccccccccCCcc---------c
Q 006635 122 CAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESK---------S 192 (637)
Q Consensus 122 ~aEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~---------~ 192 (637)
|.. ..|.|+...+.... .+.+..++.++++++.++.++++. |.|..|-|=||-=.... -
T Consensus 82 ---W~~-~~P~w~~~~~~~~~-~~~~~~~~~l~~~I~~v~~~y~~~-------g~i~~WDVvNE~i~~~~~~~~~r~~~~ 149 (320)
T PF00331_consen 82 ---WHS-QTPDWVFNLANGSP-DEKEELRARLENHIKTVVTRYKDK-------GRIYAWDVVNEAIDDDGNPGGLRDSPW 149 (320)
T ss_dssp ---ESS-SS-HHHHTSTTSSB-HHHHHHHHHHHHHHHHHHHHTTTT-------TTESEEEEEES-B-TTSSSSSBCTSHH
T ss_pred ---Ecc-cccceeeeccCCCc-ccHHHHHHHHHHHHHHHHhHhccc-------cceEEEEEeeecccCCCccccccCChh
Confidence 433 78999987511000 001237888889999988888722 78999999999643211 1
Q ss_pred cCcccHHHHHHHHHHHhcCCCCcceeeecCC
Q 006635 193 LGAAGHAYVNWAAKMAVGLDTGVPWVMCKED 223 (637)
Q Consensus 193 ~~~~~~~y~~~l~~~~~~~g~~vP~~~~~~~ 223 (637)
+...|.+|+..+-++|++..-++.++.++..
T Consensus 150 ~~~lG~~yi~~aF~~A~~~~P~a~L~~NDy~ 180 (320)
T PF00331_consen 150 YDALGPDYIADAFRAAREADPNAKLFYNDYN 180 (320)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred hhcccHhHHHHHHHHHHHhCCCcEEEecccc
Confidence 1123578999999999998888889988864
No 30
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=97.01 E-value=0.0015 Score=70.33 Aligned_cols=138 Identities=22% Similarity=0.343 Sum_probs=81.1
Q ss_pred HHHHHHHHHCCCCEEEEcccCCcCCCCC-ceeeecCcccHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCC
Q 006635 61 EDLIRKAKDGGLDVIDTYVFWNGHEPSP-GHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPG 139 (637)
Q Consensus 61 ~~~l~k~K~~G~N~I~~yvfWn~hEp~~-G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~ 139 (637)
+|.++-+|+.|+|.||.=| | +.|.. |..|.+ +..++.+-|+++||.|+|.+- | .. .|- +|+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-Y-SD--------~Wa--DPg 88 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-Y-SD--------FWA--DPG 88 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--S-SS--------S----BTT
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccccCCHH---HHHHHHHHHHHCCCeEEEeec-c-cC--------CCC--CCC
Confidence 5789999999999999987 4 55655 666666 677777888899999999862 1 11 222 232
Q ss_pred eeee------cCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEccccccccCC-ccccCc--c---cHHHHHHHHHH
Q 006635 140 ISFR------TDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPE-SKSLGA--A---GHAYVNWAAKM 207 (637)
Q Consensus 140 i~~R------t~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~-~~~~~~--~---~~~y~~~l~~~ 207 (637)
-+.. .+-....+++..|++.+++.|++. |=.+=||||-||...- -+..+. . -.++++...+.
T Consensus 89 ~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~------G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~A 162 (332)
T PF07745_consen 89 KQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAA------GVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKA 162 (332)
T ss_dssp B-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHT------T--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHH
T ss_pred CCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHH
Confidence 1111 123556788999999999999954 4467899999997531 122221 1 13344444566
Q ss_pred HhcCCCCcc-eeeecC
Q 006635 208 AVGLDTGVP-WVMCKE 222 (637)
Q Consensus 208 ~~~~g~~vP-~~~~~~ 222 (637)
.|+.+..+. .+++.+
T Consensus 163 Vr~~~p~~kV~lH~~~ 178 (332)
T PF07745_consen 163 VREVDPNIKVMLHLAN 178 (332)
T ss_dssp HHTHSSTSEEEEEES-
T ss_pred HHhcCCCCcEEEEECC
Confidence 666554443 334443
No 31
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.97 E-value=0.00073 Score=75.78 Aligned_cols=97 Identities=16% Similarity=0.231 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCC--CceeeecCcccHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc
Q 006635 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS--PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (637)
Q Consensus 58 ~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~--~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~ 135 (637)
..|+++|+.||++|+|+-+.-|-|.-.+|. +|++|-+|....+++|+.+.++||..++-. -.-.+|.||.
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eeccccccee
Confidence 569999999999999999999999999999 699999999899999999999999977664 2557999998
Q ss_pred cCCCeeeecCChhhHHHHHHHHHHHHHHHHh
Q 006635 136 YVPGISFRTDNGPFKVAMQGFTQKIVQMMKN 166 (637)
Q Consensus 136 ~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~ 166 (637)
+.-+- .|+...+...+|.+.+++.+++
T Consensus 130 ~~ggw----~~~~~~~~F~~Ya~~~~~~~gd 156 (455)
T PF00232_consen 130 DYGGW----LNRETVDWFARYAEFVFERFGD 156 (455)
T ss_dssp HHTGG----GSTHHHHHHHHHHHHHHHHHTT
T ss_pred ecccc----cCHHHHHHHHHHHHHHHHHhCC
Confidence 64332 3466667777777777777774
No 32
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=96.85 E-value=0.0017 Score=66.98 Aligned_cols=96 Identities=24% Similarity=0.287 Sum_probs=68.7
Q ss_pred cCCccceEEEEEEEEecCCcccccCCCccEEEEccCccEEEEEECCEEEEEEECCcccceeEEEeeEE--eecc-----c
Q 006635 466 TRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPAN--LRAG-----I 538 (637)
Q Consensus 466 TkD~sdYlWY~t~v~v~~~~~~~~~~~~~~L~v~s~~h~~~VfVNG~~iGs~~g~~~~~~f~f~~~i~--L~~G-----~ 538 (637)
-+|+.|.+||+.+|.++.+.. ...+++.+||+.|++-.|-|+|||.-+-+|.|++ ..|+..|+ +..| +
T Consensus 83 lrdfv~~~wyer~v~vpe~w~-~~~~~r~vlr~~s~H~~Aivwvng~~~~~h~gg~----lP~~~~is~~~~~g~~~~~d 157 (297)
T KOG2024|consen 83 LRDFVGLVWYERTVTVPESWT-QDLGKRVVLRIGSAHSYAIVWVNGVDALEHEGGH----LPLEPDISALVFFGPLPAID 157 (297)
T ss_pred cccceeeeEEEEEEEcchhhh-hhcCCeEEEEeecccceeEEEEcceeecccccCc----cccchhhhhhhhcccccccc
Confidence 478899999999999987643 3445678999999999999999999999998875 44665552 2223 2
Q ss_pred cEEEEEEeccccccccCcce-eeeceeeeEEEEe
Q 006635 539 NKIALLSIAVGLPNVGLHYE-TWETGVRGAVVLH 571 (637)
Q Consensus 539 N~IslLs~tvGl~n~G~~~e-~~~aGI~g~V~l~ 571 (637)
|+|+ +. .| +|.. .|| ++|||+.+.|.++
T Consensus 158 n~L~--~~-t~-~~~~-~~dffnYag~~~sv~l~ 186 (297)
T KOG2024|consen 158 NNLL--SW-TG-PNSF-CFDFFNYAGEQRSVCLY 186 (297)
T ss_pred Cccc--cc-cc-CCcc-cccCCCchhhheeeeec
Confidence 3332 22 22 3332 345 7999999888874
No 33
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=96.63 E-value=0.032 Score=63.43 Aligned_cols=335 Identities=20% Similarity=0.266 Sum_probs=166.7
Q ss_pred EEeEEEEEEeeC------CCCCHhHHHHHHHHH---HHCCCCEEEEccc---CCcCCC----CCceee---ecC-c---c
Q 006635 41 QRRILISGSIHY------PRSTPEMWEDLIRKA---KDGGLDVIDTYVF---WNGHEP----SPGHYN---FEG-S---Y 97 (637)
Q Consensus 41 ~~~~l~sG~~Hy------~r~~~~~W~~~l~k~---K~~G~N~I~~yvf---Wn~hEp----~~G~yd---F~g-~---~ 97 (637)
+++.=++|++=- .+.+++.=++.|+.+ +-+|++.+|+.|- ...++- .|+.|+ |+- + .
T Consensus 74 Q~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d~~~D~~l~~Fs~~~~d~~ 153 (496)
T PF02055_consen 74 QTIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDDVPGDFNLSNFSIAREDKK 153 (496)
T ss_dssp EE--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST-STTHTTTTT---HHHHHT
T ss_pred eEEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccCCCCCCccccCCccccchh
Confidence 455567887742 334554444444444 5589999998775 222221 233222 221 1 1
Q ss_pred cHHHHHHHHHHc--CCEEEEecCceeeeecCCCCCCcccccCCCe----eeec-CChhhHHHHHHHHHHHHHHHHhcccc
Q 006635 98 DLVRFIKTVQRV--GLYAHLRIGPYVCAEWNFGGFPVWLKYVPGI----SFRT-DNGPFKVAMQGFTQKIVQMMKNEKLF 170 (637)
Q Consensus 98 dL~~fl~la~~~--GL~vilr~GPyi~aEw~~GG~P~WL~~~p~i----~~Rt-~~~~y~~~~~~~~~~i~~~l~~~~l~ 170 (637)
.+..+|+.|++. +|+++.-| |. .|.|++....+ .++. .++.|.++...|+.+.++.++++++
T Consensus 154 ~~ip~ik~a~~~~~~lki~aSp-------WS---pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI- 222 (496)
T PF02055_consen 154 YKIPLIKEALAINPNLKIFASP-------WS---PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGI- 222 (496)
T ss_dssp THHHHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--
T ss_pred hHHHHHHHHHHhCCCcEEEEec-------CC---CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCC-
Confidence 234678877664 57777766 64 79999863322 2332 2456778888888888888885544
Q ss_pred ccCCCceEEccccccccCCc---cccC-----c-ccHHHHHH-HHHHHhcCCC--CcceeeecC--CCCCC---ccccC-
Q 006635 171 ASQGGPIILSQIENEYGPES---KSLG-----A-AGHAYVNW-AAKMAVGLDT--GVPWVMCKE--DDAPD---PVINS- 232 (637)
Q Consensus 171 ~~~gGpII~~QIENEyg~~~---~~~~-----~-~~~~y~~~-l~~~~~~~g~--~vP~~~~~~--~~~p~---~vi~~- 232 (637)
||=++-+.||..... ..|. + ..++|++. |.-..++.++ +|-+++++. .+.|+ .+++-
T Consensus 223 -----~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d~ 297 (496)
T PF02055_consen 223 -----PIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILNDP 297 (496)
T ss_dssp ------ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTSH
T ss_pred -----CeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcCh
Confidence 899999999987411 1121 1 23566653 7777877766 776666553 23342 22221
Q ss_pred -----C--CCCcc--C-CC-------CCCCCCCCceeeeeccccccccCCCc---cCCCHHHHHHHHHHHHHhCCeeeee
Q 006635 233 -----C--NGFYC--D-AF-------SPNKPYKPTLWTEAWSGWFTEFGGAV---HRRPVQDLAFAVARFIQKGGSFFNY 292 (637)
Q Consensus 233 -----~--ng~~~--~-~~-------~~~~~~~P~~~tE~~~Gwf~~wG~~~---~~r~~~d~a~~~~~~~~~g~s~~ny 292 (637)
. -+++| + .. ....|++..+.||-..|.- .|+... .-..++..+..+..-+..+.+ ++
T Consensus 298 ~A~~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~--gw 374 (496)
T PF02055_consen 298 EAAKYVDGIAFHWYGGDPSPQALDQVHNKFPDKFLLFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNNWVS--GW 374 (496)
T ss_dssp HHHTTEEEEEEEETTCS-HCHHHHHHHHHSTTSEEEEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHTTEE--EE
T ss_pred hhHhheeEEEEECCCCCchhhHHHHHHHHCCCcEEEeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHhhce--ee
Confidence 0 13344 1 11 1246889999999876531 122111 111234455555555666644 22
Q ss_pred eEe------ecCCCCCC-CCCCCcccccccCCCCCCCCCCCCchhHHHHHHHHHHHHhhhccccCCCCcccCCCCceEEE
Q 006635 293 YMY------HGGTNFGR-TAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKLCEYALVSSDPTVTSLGTYQQAH 365 (637)
Q Consensus 293 YM~------hGGTNfG~-~~G~~~~~tSYDy~Apl~E~G~~~~pky~~lk~lh~~l~~~~~~Ll~~~p~~~~lg~~~~~~ 365 (637)
-++ .||-|++. ...++.++.. +. +| -.++|.|..|..+.+||+.-...+-.. ......+.++.
T Consensus 375 ~~WNl~LD~~GGP~~~~n~~d~~iivd~-~~----~~--~~~~p~yY~~gHfSKFV~PGa~RI~st---~~~~~~~l~~v 444 (496)
T PF02055_consen 375 IDWNLALDENGGPNWVGNFCDAPIIVDS-DT----GE--FYKQPEYYAMGHFSKFVRPGAVRIGST---SSSSDSGLEAV 444 (496)
T ss_dssp EEEESEBETTS---TT---B--SEEEEG-GG----TE--EEE-HHHHHHHHHHTTS-TT-EEEEEE---ESSSTTTEEEE
T ss_pred eeeeeecCCCCCCcccCCCCCceeEEEc-CC----Ce--EEEcHHHHHHHHHhcccCCCCEEEEee---ccCCCCceeEE
Confidence 222 38888753 2122322111 11 12 234799999999999998433332211 00112246777
Q ss_pred EEecCCccEEEEEeecCCCce-eEEEECC-------eEEeeCCceeE
Q 006635 366 VFSAGQQKCAAFLSNYNTKSA-ARVTFNG-------RQYNLPPWSIS 404 (637)
Q Consensus 366 ~y~~~~~~~~~Fl~N~~~~~~-~~V~f~~-------~~y~lp~~sv~ 404 (637)
.|.+.++.-++-+.|-.+... ++|++++ -.++|||+||.
T Consensus 445 AF~nPDGs~vvVv~N~~~~~~~~~v~v~~~~~~~~~~~~~lp~~s~~ 491 (496)
T PF02055_consen 445 AFLNPDGSIVVVVLNRGDSDQNFSVTVKDGSKGNNHFNVTLPPRSIV 491 (496)
T ss_dssp EEEETTSEEEEEEEE-SSS-EEEEEEEECTTTEE--EEEEEE-TTEE
T ss_pred EEECCCCCEEEEEEcCCCCccceEEEEecCCcceeEEEEEeCCCceE
Confidence 787777777777777554433 3566653 36899998874
No 34
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.56 E-value=0.0074 Score=66.88 Aligned_cols=115 Identities=16% Similarity=0.142 Sum_probs=73.4
Q ss_pred CHhHH-----HHHHHHHHHCCCCEEEEcccCCcCCCCC--ceeee--cCcccHHHHHHHHHHcCCEEEEec----Cceee
Q 006635 56 TPEMW-----EDLIRKAKDGGLDVIDTYVFWNGHEPSP--GHYNF--EGSYDLVRFIKTVQRVGLYAHLRI----GPYVC 122 (637)
Q Consensus 56 ~~~~W-----~~~l~k~K~~G~N~I~~yvfWn~hEp~~--G~ydF--~g~~dL~~fl~la~~~GL~vilr~----GPyi~ 122 (637)
....| ++.+..||++|||+||.++.|..+++.. +.|-. +-..-|++.|+.|++.||+|+|.. |.-.|
T Consensus 66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~ 145 (407)
T COG2730 66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNG 145 (407)
T ss_pred chhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCC
Confidence 45568 8999999999999999999944446543 22222 211378899999999999999983 22222
Q ss_pred eecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEccccccccC
Q 006635 123 AEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGP 188 (637)
Q Consensus 123 aEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~ 188 (637)
-| ..|.... . ....+.+++..+-++.|+.+.++ .-.||++|+=||.-.
T Consensus 146 ~~------~s~~~~~--~---~~~~~~~~~~~~~w~~ia~~f~~-------~~~VIg~~~~NEP~~ 193 (407)
T COG2730 146 HE------HSGYTSD--Y---KEENENVEATIDIWKFIANRFKN-------YDTVIGFELINEPNG 193 (407)
T ss_pred cC------ccccccc--c---cccchhHHHHHHHHHHHHHhccC-------CCceeeeeeecCCcc
Confidence 11 1222110 0 01233344555555666666663 448999999999874
No 35
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.47 E-value=0.0026 Score=71.91 Aligned_cols=96 Identities=14% Similarity=0.155 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCC--CceeeecCcccHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc
Q 006635 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS--PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (637)
Q Consensus 58 ~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~--~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~ 135 (637)
..|+++|+.||++|+|+-++-|-|.-..|. +|++|-+|....+++|+.+.++||..++-. -.=.+|.||.
T Consensus 69 hry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL--------~H~dlP~~L~ 140 (477)
T PRK15014 69 GHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL--------SHFEMPLHLV 140 (477)
T ss_pred cccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 358899999999999999999999999997 567888888899999999999999987764 1336899997
Q ss_pred cC-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 006635 136 YV-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (637)
Q Consensus 136 ~~-p~i~~Rt~~~~y~~~~~~~~~~i~~~l~ 165 (637)
.. -|- .|+...++-.+|.+.+++.++
T Consensus 141 ~~yGGW----~n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 141 QQYGSW----TNRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred HhcCCC----CChHHHHHHHHHHHHHHHHhc
Confidence 53 332 345555666666666666666
No 36
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.47 E-value=0.0025 Score=71.88 Aligned_cols=96 Identities=13% Similarity=0.151 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCC--CceeeecCcccHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc
Q 006635 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS--PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (637)
Q Consensus 58 ~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~--~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~ 135 (637)
..|+++++.||++|+|+.++-+-|.-.+|. +++.|-+|....+++|+.|.++||..++-. ..=.+|.||.
T Consensus 71 hry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l~ 142 (474)
T PRK09852 71 HRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHLV 142 (474)
T ss_pred hhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 457999999999999999999999999997 556787888899999999999999987664 2336899997
Q ss_pred cC-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 006635 136 YV-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (637)
Q Consensus 136 ~~-p~i~~Rt~~~~y~~~~~~~~~~i~~~l~ 165 (637)
.. -|- .|+...++..+|.+.+++.++
T Consensus 143 ~~~GGW----~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 143 TEYGSW----RNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred HhcCCC----CCHHHHHHHHHHHHHHHHHhc
Confidence 53 332 244445555555555555555
No 37
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.34 E-value=0.062 Score=52.51 Aligned_cols=134 Identities=16% Similarity=0.198 Sum_probs=77.5
Q ss_pred CCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCC-----CC---CceeeecCcccHHHHHHHHHHcCCEEEEecCceeeee
Q 006635 53 PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHE-----PS---PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAE 124 (637)
Q Consensus 53 ~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hE-----p~---~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aE 124 (637)
-.+++++|+++++.||+.|+|+|=+= |...+ |. ++.|.-....-|..+|++|++.||+|.+-.+.
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~----- 87 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF----- 87 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC-----
Confidence 46799999999999999999998421 22211 11 22333334457999999999999999987641
Q ss_pred cCCCCCCcccccCCCeeeecCChhh-HHHHHHHHHHHHHHHHhccccccCCCceEEccccccccCCccccCcccHHHHHH
Q 006635 125 WNFGGFPVWLKYVPGISFRTDNGPF-KVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNW 203 (637)
Q Consensus 125 w~~GG~P~WL~~~p~i~~Rt~~~~y-~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~ 203 (637)
-|.|-.. .|+.. .+.-++...+|.++... ....=+|=|=.|..... ....+..+.
T Consensus 88 -----~~~~w~~--------~~~~~~~~~~~~v~~el~~~yg~-------h~sf~GWYip~E~~~~~----~~~~~~~~~ 143 (166)
T PF14488_consen 88 -----DPDYWDQ--------GDLDWEAERNKQVADELWQRYGH-------HPSFYGWYIPYEIDDYN----WNAPERFAL 143 (166)
T ss_pred -----Cchhhhc--------cCHHHHHHHHHHHHHHHHHHHcC-------CCCCceEEEecccCCcc----cchHHHHHH
Confidence 2333331 22222 11122233444444443 33566777888876542 123455555
Q ss_pred HHHHHhcCCCCcce
Q 006635 204 AAKMAVGLDTGVPW 217 (637)
Q Consensus 204 l~~~~~~~g~~vP~ 217 (637)
|.+.+++.--+.|.
T Consensus 144 l~~~lk~~s~~~Pv 157 (166)
T PF14488_consen 144 LGKYLKQISPGKPV 157 (166)
T ss_pred HHHHHHHhCCCCCe
Confidence 55555544334443
No 38
>PLN02998 beta-glucosidase
Probab=96.22 E-value=0.0045 Score=70.26 Aligned_cols=100 Identities=16% Similarity=0.188 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCC-CceeeecCcccHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccc
Q 006635 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (637)
Q Consensus 58 ~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~-~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~~ 136 (637)
..|+++|+.||++|+|+-++-|-|.-.+|. .|.+|-+|....+++|+.+.++||..++-. -.=-+|.||..
T Consensus 82 hry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL--------~H~dlP~~L~~ 153 (497)
T PLN02998 82 HKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTL--------HHFDLPQALED 153 (497)
T ss_pred HhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEe--------cCCCCCHHHHH
Confidence 458999999999999999999999999996 678898899999999999999999876654 12248999976
Q ss_pred C-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 006635 137 V-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (637)
Q Consensus 137 ~-p~i~~Rt~~~~y~~~~~~~~~~i~~~l~ 165 (637)
. -|-.-|..=..|.++++..++++.+.++
T Consensus 154 ~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk 183 (497)
T PLN02998 154 EYGGWLSQEIVRDFTAYADTCFKEFGDRVS 183 (497)
T ss_pred hhCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 3 4432222224455555555555555554
No 39
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=96.21 E-value=0.005 Score=69.48 Aligned_cols=99 Identities=14% Similarity=0.129 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCC-CceeeecCcccHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccc
Q 006635 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (637)
Q Consensus 58 ~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~-~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~~ 136 (637)
..|+++++.||++|+|+-++-|-|.-.+|. +|.+|-+|....+++|+.|.++||.-++-. -.=.+|.||.+
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 125 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTL--------HHFDTPEALHS 125 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCcHHHHH
Confidence 457999999999999999999999999997 578888899999999999999999876664 12358999986
Q ss_pred CCCeeeecCChhhHHHHHHHHHHHHHHHH
Q 006635 137 VPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (637)
Q Consensus 137 ~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~ 165 (637)
.-|-.-|..-..|.++++..++++.+ +|
T Consensus 126 ~GGW~n~~~v~~F~~YA~~~~~~fgd-Vk 153 (469)
T PRK13511 126 NGDWLNRENIDHFVRYAEFCFEEFPE-VK 153 (469)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhCC-CC
Confidence 43321111123344445444555444 44
No 40
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=96.19 E-value=0.0062 Score=68.89 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCC--CceeeecCcccHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc
Q 006635 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS--PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (637)
Q Consensus 58 ~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~--~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~ 135 (637)
..|+++|+.||++|+|+-++-|-|.-.+|. +|++|=+|....+++|+.+.++||..++-. -.=-+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL--------~H~dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTI--------THFDCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cccCCCHHHH
Confidence 568999999999999999999999999997 667888888899999999999999876654 1225899997
Q ss_pred cC-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 006635 136 YV-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (637)
Q Consensus 136 ~~-p~i~~Rt~~~~y~~~~~~~~~~i~~~l~ 165 (637)
.. -|-.-|..=..|.++++..++++.+.++
T Consensus 145 ~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk 175 (478)
T PRK09593 145 EEYGGWRNRKMVGFYERLCRTLFTRYKGLVK 175 (478)
T ss_pred hhcCCCCChHHHHHHHHHHHHHHHHhcCcCC
Confidence 54 4431222223455555555555555554
No 41
>PLN02814 beta-glucosidase
Probab=96.11 E-value=0.0054 Score=69.76 Aligned_cols=100 Identities=17% Similarity=0.222 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCC-CceeeecCcccHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccc
Q 006635 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (637)
Q Consensus 58 ~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~-~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~~ 136 (637)
..|+++|+.||++|+|+-++-|-|.-.+|. +|.+|-+|....+++|+.|.++||..++-.= =| -+|.||.+
T Consensus 77 hry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~-----H~---dlP~~L~~ 148 (504)
T PLN02814 77 HKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY-----HY---DLPQSLED 148 (504)
T ss_pred HhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec-----CC---CCCHHHHH
Confidence 458999999999999999999999999996 6889999999999999999999998766541 13 47999976
Q ss_pred C-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 006635 137 V-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (637)
Q Consensus 137 ~-p~i~~Rt~~~~y~~~~~~~~~~i~~~l~ 165 (637)
. -|-.-|..-..|.++++..++++.+.+|
T Consensus 149 ~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 178 (504)
T PLN02814 149 EYGGWINRKIIEDFTAFADVCFREFGEDVK 178 (504)
T ss_pred hcCCcCChhHHHHHHHHHHHHHHHhCCcCC
Confidence 4 3421222223455555555555554444
No 42
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=96.09 E-value=0.0064 Score=68.72 Aligned_cols=100 Identities=15% Similarity=0.091 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCC--CceeeecCcccHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc
Q 006635 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS--PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (637)
Q Consensus 58 ~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~--~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~ 135 (637)
..|+++|+.||++|+|+-++-|-|.-.+|. +|.+|=+|....+++|+.|.++||.-++-. -.=-+|.||.
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL--------~H~dlP~~L~ 138 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTL--------SHFEMPYHLV 138 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCCHHHH
Confidence 558999999999999999999999999997 566888888899999999999999876654 1225899997
Q ss_pred cC-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 006635 136 YV-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (637)
Q Consensus 136 ~~-p~i~~Rt~~~~y~~~~~~~~~~i~~~l~ 165 (637)
.. -|-.-|..-..|.++++.-++++.+.+|
T Consensus 139 ~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 169 (476)
T PRK09589 139 TEYGGWRNRKLIDFFVRFAEVVFTRYKDKVK 169 (476)
T ss_pred HhcCCcCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 53 4432222223455555555555555554
No 43
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=96.08 E-value=0.0069 Score=68.34 Aligned_cols=96 Identities=11% Similarity=0.074 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCC-CceeeecCcccHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccc
Q 006635 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (637)
Q Consensus 58 ~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~-~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~~ 136 (637)
..|+++|+.||++|+|+-++-|-|.-.+|. +|++|=+|....+++|+.|.++||.-++-.= .=-+|.||.+
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~--------H~dlP~~L~~ 124 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH--------HFDTPEALHS 124 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc--------CCCCcHHHHH
Confidence 458999999999999999999999999996 6788888888999999999999999777651 2258999976
Q ss_pred CCCeeeecCChhhHHHHHHHHHHHHHHHH
Q 006635 137 VPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (637)
Q Consensus 137 ~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~ 165 (637)
.-|- .|+...++-.+|.+.+++.++
T Consensus 125 ~GGW----~n~~~v~~F~~YA~~~f~~fg 149 (467)
T TIGR01233 125 NGDF----LNRENIEHFIDYAAFCFEEFP 149 (467)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 5442 345555555555566655555
No 44
>PLN02849 beta-glucosidase
Probab=95.93 E-value=0.0085 Score=68.19 Aligned_cols=100 Identities=18% Similarity=0.235 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCC-CceeeecCcccHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccccc
Q 006635 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (637)
Q Consensus 58 ~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~-~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~~ 136 (637)
..|+++|+.||++|+|+-++-|-|.-.+|. .|++|=+|....+++|+.+.++||.-++-. -.=-+|.||.+
T Consensus 79 hrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 150 (503)
T PLN02849 79 HKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTL--------FHYDHPQYLED 150 (503)
T ss_pred HhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEee--------cCCCCcHHHHH
Confidence 458999999999999999999999999996 478888898999999999999999976654 12248999976
Q ss_pred C-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 006635 137 V-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (637)
Q Consensus 137 ~-p~i~~Rt~~~~y~~~~~~~~~~i~~~l~ 165 (637)
. -|-.-|..-..|.++++..++++.+.+|
T Consensus 151 ~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk 180 (503)
T PLN02849 151 DYGGWINRRIIKDFTAYADVCFREFGNHVK 180 (503)
T ss_pred hcCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 3 4432222223455555555555555554
No 45
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.86 E-value=0.037 Score=58.28 Aligned_cols=117 Identities=21% Similarity=0.253 Sum_probs=80.6
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHH---HcCCEEEEecCceeeeecCCCCCCccccc
Q 006635 60 WEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQ---RVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (637)
Q Consensus 60 W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~---~~GL~vilr~GPyi~aEw~~GG~P~WL~~ 136 (637)
=.|.|+-+|+.|+|-|+.-| |+..--..|.=.=.|+.|+.+.+++|+ ..||+|++.+= .-+|-.
T Consensus 65 ~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-----------YSDfwa- 131 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-----------YSDFWA- 131 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-----------chhhcc-
Confidence 36889999999999999854 666544445444456789999998865 57999999861 112211
Q ss_pred CCCe------eeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEccccccccC-CccccCc
Q 006635 137 VPGI------SFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGP-ESKSLGA 195 (637)
Q Consensus 137 ~p~i------~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~-~~~~~~~ 195 (637)
+|+- -...+-+.-++++-.|.+..+..|++++. -+=||||.||-.+ .-+..|+
T Consensus 132 DPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~eGi------~pdmVQVGNEtn~gflwp~Ge 191 (403)
T COG3867 132 DPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKEGI------LPDMVQVGNETNGGFLWPDGE 191 (403)
T ss_pred ChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCC------CccceEeccccCCceeccCCC
Confidence 2321 11223456678888999999999996654 4669999999853 3344454
No 46
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=95.75 E-value=3.5 Score=45.65 Aligned_cols=251 Identities=14% Similarity=0.165 Sum_probs=133.6
Q ss_pred eeCCCCCHhHHHHHHHHHHHCCCCEEEE-------cccCCcCCCCCceeeecCccc-HHHHHHHHHHcCCEEEEecCcee
Q 006635 50 IHYPRSTPEMWEDLIRKAKDGGLDVIDT-------YVFWNGHEPSPGHYNFEGSYD-LVRFIKTVQRVGLYAHLRIGPYV 121 (637)
Q Consensus 50 ~Hy~r~~~~~W~~~l~k~K~~G~N~I~~-------yvfWn~hEp~~G~ydF~g~~d-L~~fl~la~~~GL~vilr~GPyi 121 (637)
+.+.+..++.| .+.+|++|+.-|-. +-.|...-..-..-+-.-.+| |.+|.+.|+++||++-+ |.
T Consensus 76 F~p~~fD~~~W---a~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~----Y~ 148 (384)
T smart00812 76 FTAEKFDPEEW---ADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGL----YH 148 (384)
T ss_pred CCchhCCHHHH---HHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEE----Ec
Confidence 34455678888 56788889886642 233655433222222221344 56788899999997655 44
Q ss_pred ee-ecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEccccccccCCccccCcccHHH
Q 006635 122 CA-EWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAY 200 (637)
Q Consensus 122 ~a-Ew~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~y 200 (637)
.. +|.+ |.|....+.-..+.+.+.|.++++.|+.+|.+.|.++ ||-|++- +-..+.. ...--
T Consensus 149 S~~DW~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Y-------gpd~lWf-D~~~~~~------~~~~~ 211 (384)
T smart00812 149 SLFDWFN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRY-------KPDLLWF-DGGWEAP------DDYWR 211 (384)
T ss_pred CHHHhCC---CccccccccccccccchhHHHHHHHHHHHHHHHHhcC-------CCceEEE-eCCCCCc------cchhc
Confidence 43 6654 5443211111223456788888888888888888743 2333331 2111111 00011
Q ss_pred HHHHHHHHhcCCCCc-ceeeecCCCCCCccccCCCCCc--c-CCCCCCC-CCCCceeee-eccccccccCC-CccCCCHH
Q 006635 201 VNWAAKMAVGLDTGV-PWVMCKEDDAPDPVINSCNGFY--C-DAFSPNK-PYKPTLWTE-AWSGWFTEFGG-AVHRRPVQ 273 (637)
Q Consensus 201 ~~~l~~~~~~~g~~v-P~~~~~~~~~p~~vi~~~ng~~--~-~~~~~~~-~~~P~~~tE-~~~Gwf~~wG~-~~~~r~~~ 273 (637)
.+.+.++++++.-+. -.+.++... .. .+. .|.+ | +...+.. ...|--.+- .-.+|+-+-+. ....++++
T Consensus 212 ~~~l~~~~~~~qP~~~~vvvn~R~~-~~--~~~-~g~~~~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~~ 287 (384)
T smart00812 212 SKEFLAWLYNLSPVKDTVVVNDRWG-GT--GCK-HGGFYTDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSPK 287 (384)
T ss_pred HHHHHHHHHHhCCCCceEEEEcccc-cc--CCC-CCCcccCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCHH
Confidence 344555665553332 012233211 00 000 0111 1 1111111 111210000 11245444333 23367999
Q ss_pred HHHHHHHHHHHhCCee-eeeeEeecCCCCCCCCCCCcccccccCCCCCCCCCCCCchhHHHHHHHHHHHHhhhccccCCC
Q 006635 274 DLAFAVARFIQKGGSF-FNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKLCEYALVSSD 352 (637)
Q Consensus 274 d~a~~~~~~~~~g~s~-~nyYM~hGGTNfG~~~G~~~~~tSYDy~Apl~E~G~~~~pky~~lk~lh~~l~~~~~~Ll~~~ 352 (637)
++...+....++||++ +|. | -+.+|.+.+..-..|+++.+.|+..+.++-.+.
T Consensus 288 ~li~~l~~~Vsk~GnlLLNV---------g-----------------P~~dG~ip~~~~~~L~~iG~Wl~~ngeaIy~tr 341 (384)
T smart00812 288 ELIRDLVDIVSKGGNLLLNV---------G-----------------PKADGTIPEEEEERLLEIGKWLKVNGEAIYGTR 341 (384)
T ss_pred HHHHHHhhhcCCCceEEEcc---------C-----------------CCCCCCCCHHHHHHHHHHHHHHHhCCceeecCC
Confidence 9999999999999985 332 2 356788877777899999999999999887665
Q ss_pred Cc
Q 006635 353 PT 354 (637)
Q Consensus 353 p~ 354 (637)
|.
T Consensus 342 ~~ 343 (384)
T smart00812 342 PW 343 (384)
T ss_pred CC
Confidence 54
No 47
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=94.90 E-value=0.14 Score=48.23 Aligned_cols=99 Identities=12% Similarity=0.131 Sum_probs=65.7
Q ss_pred HHHHHHHHCCCCEEEEccc-------C--CcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCc
Q 006635 62 DLIRKAKDGGLDVIDTYVF-------W--NGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPV 132 (637)
Q Consensus 62 ~~l~k~K~~G~N~I~~yvf-------W--n~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~ 132 (637)
+.++.+|++|+|+|.++.= | ..|.+.|+- ++.-|.++++.|++.||.|+.|...- -.|+..---|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L----~~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL----KRDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC----CcCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 3467899999999998432 2 334555543 22356999999999999999998655 34444456799
Q ss_pred ccccCCCee-------------eecCChhhHHHHHHHHHHHHHHHH
Q 006635 133 WLKYVPGIS-------------FRTDNGPFKVAMQGFTQKIVQMMK 165 (637)
Q Consensus 133 WL~~~p~i~-------------~Rt~~~~y~~~~~~~~~~i~~~l~ 165 (637)
|+...++-+ .-.-|.+|++.+.+-+++|++...
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y~ 124 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRYD 124 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcCC
Confidence 987543311 112356788877777776666543
No 48
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.67 E-value=0.04 Score=61.59 Aligned_cols=96 Identities=19% Similarity=0.286 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCCCc--eeeecCcccHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc
Q 006635 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPG--HYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (637)
Q Consensus 58 ~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G--~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~ 135 (637)
..++++++.||++|+|+.|+-|-|.-.-|..+ +.+=.|....+++++.|.++|+.-++-.= .=-+|.||.
T Consensus 59 hrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~--------Hfd~P~~L~ 130 (460)
T COG2723 59 HRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY--------HFDLPLWLQ 130 (460)
T ss_pred hhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec--------ccCCcHHHh
Confidence 45789999999999999999999999999654 48888888999999999999999776641 223799998
Q ss_pred cC-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 006635 136 YV-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (637)
Q Consensus 136 ~~-p~i~~Rt~~~~y~~~~~~~~~~i~~~l~ 165 (637)
+. -|-. |..-.++-.+|.+.+++.++
T Consensus 131 ~~ygGW~----nR~~i~~F~~ya~~vf~~f~ 157 (460)
T COG2723 131 KPYGGWE----NRETVDAFARYAATVFERFG 157 (460)
T ss_pred hccCCcc----CHHHHHHHHHHHHHHHHHhc
Confidence 75 3432 33333444455555555554
No 49
>PRK09936 hypothetical protein; Provisional
Probab=94.66 E-value=0.73 Score=48.83 Aligned_cols=58 Identities=22% Similarity=0.390 Sum_probs=46.8
Q ss_pred CCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCc-ccHHHHHHHHHHcCCEEEEe
Q 006635 53 PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS-YDLVRFIKTVQRVGLYAHLR 116 (637)
Q Consensus 53 ~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~-~dL~~fl~la~~~GL~vilr 116 (637)
.+++++.|+++++.+|+.|++|+=+ =|..- |.=||.+. -.|.+.++.|++.||.|++-
T Consensus 33 ~~~~~~qWq~~~~~~~~~G~~tLiv--QWt~y----G~~~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 33 SQVTDTQWQGLWSQLRLQGFDTLVV--QWTRY----GDADFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEE--Eeeec----cCCCcccchHHHHHHHHHHHHcCCEEEEc
Confidence 4679999999999999999999754 45443 11188765 48999999999999999875
No 50
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=93.82 E-value=0.68 Score=54.21 Aligned_cols=53 Identities=23% Similarity=0.261 Sum_probs=38.7
Q ss_pred HHHHHHCCCCEEEE-cccCCcCCCCCcee----------eecCcccHHHHHHHHHHcCCEEEEec
Q 006635 64 IRKAKDGGLDVIDT-YVFWNGHEPSPGHY----------NFEGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 64 l~k~K~~G~N~I~~-yvfWn~hEp~~G~y----------dF~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
|.-+|++|+|+|+. +|+..-....= -| .|.+..||.+|++.|+++||.|||..
T Consensus 163 ~dyl~~LGvt~i~L~Pi~e~~~~~~w-GY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~ 226 (613)
T TIGR01515 163 IPYVKELGFTHIELLPVAEHPFDGSW-GYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDW 226 (613)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCC-CCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 37779999999998 77754211100 12 24445699999999999999999984
No 51
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=92.18 E-value=1.9 Score=44.82 Aligned_cols=131 Identities=13% Similarity=0.177 Sum_probs=77.2
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEE-EecCceeeeecCCCCCCcccc
Q 006635 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH-LRIGPYVCAEWNFGGFPVWLK 135 (637)
Q Consensus 57 ~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vi-lr~GPyi~aEw~~GG~P~WL~ 135 (637)
...|++.|+.+++.|++.|+.-+ +.. ...++..+++ ..++..+.++++++||.|. +.+++ .+.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~-~~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~-------~~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DET-DDRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSA-------HRRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCc-cchhhccCCC-HHHHHHHHHHHHHcCCCceeeecCC-------CccCc----
Confidence 35699999999999999999943 222 2223344554 2478899999999999874 44431 01111
Q ss_pred cCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEccccccccCCccccCc---ccHHHHHHHHHHHhcCC
Q 006635 136 YVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGA---AGHAYVNWAAKMAVGLD 212 (637)
Q Consensus 136 ~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~---~~~~y~~~l~~~~~~~g 212 (637)
+-..|+.-+++..+.+++.++..+ .+ |.++|.+-- .++.. .....+ .-.+.++.+.++|++.|
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~~-~~~~~-~~~~~~~~~~~~~~l~~l~~~A~~~G 146 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLAR--DL----GIRTIQLAG-YDVYY-EEHDEETRRRFREGLKEAVELAARAQ 146 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEecC-ccccc-CcCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 112345556666677777777777 33 556665421 11100 000000 12356667777787777
Q ss_pred CCc
Q 006635 213 TGV 215 (637)
Q Consensus 213 ~~v 215 (637)
+.+
T Consensus 147 v~l 149 (279)
T TIGR00542 147 VTL 149 (279)
T ss_pred CEE
Confidence 754
No 52
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=91.95 E-value=0.83 Score=54.99 Aligned_cols=99 Identities=17% Similarity=0.158 Sum_probs=68.8
Q ss_pred ccceEEEEEEEEecCCcccccCCCccEEEEccCccEEEEEECCEEEEEEECCcccceeE-EEeeEE--eeccccEEEEEE
Q 006635 469 TSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFT-FSGPAN--LRAGINKIALLS 545 (637)
Q Consensus 469 ~sdYlWY~t~v~v~~~~~~~~~~~~~~L~v~s~~h~~~VfVNG~~iGs~~g~~~~~~f~-f~~~i~--L~~G~N~IslLs 545 (637)
...-++|.+.+.++..+ .+....|.+........||+||+.++++.|. |+ |+..|+ ++.+.|.+.+-.
T Consensus 61 ~~~~~~y~~~~~~~~~~----~~~~~~l~f~~~~~~~~v~~ng~~~l~~eg~-----~~~fev~vng~~v~~~~~~~~~~ 131 (808)
T COG3250 61 IYTNVWYPREVFPPKVP----AGNRIGLYFDAVDTLAKVWLNGQEVLEFQGV-----YTPFEVDVTGPYVGGGKDSRITV 131 (808)
T ss_pred eecceeeeecccCCccc----cCCceEEEEeccccceeEEeCCeEEEEecCc-----eeEEEEeeccceecCCcceEEEE
Confidence 34448999998776442 2456789999999999999999999999987 45 777763 445556555555
Q ss_pred ec----------------ccc---ccccCcce-eeeceeeeEEEEeecCCC
Q 006635 546 IA----------------VGL---PNVGLHYE-TWETGVRGAVVLHGLDHG 576 (637)
Q Consensus 546 ~t----------------vGl---~n~G~~~e-~~~aGI~g~V~l~g~~~g 576 (637)
+. |+. .++=+..+ .+++||.++|.|.-.+++
T Consensus 132 ~~dis~~~~~~~~~~~~~v~~~~~~~~~~~~d~~r~aGi~RdV~l~i~p~~ 182 (808)
T COG3250 132 EFDISPNLQTGPNGLVVTVENWSKGSYYEDQDFFRYAGIHRDVMLYITPNT 182 (808)
T ss_pred eeccccccccCCccCceEEeccCCCCCccccCeeecccccceeEEEEccce
Confidence 44 111 12222334 689999999999876665
No 53
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=91.37 E-value=2.2 Score=49.65 Aligned_cols=74 Identities=24% Similarity=0.413 Sum_probs=51.0
Q ss_pred cceEEEEEEEEecCCcccccCCCccEEEEccCccEEEEEECCEEEEEEECCcccceeEEEeeE-EeeccccEEEEEEecc
Q 006635 470 SDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPA-NLRAGINKIALLSIAV 548 (637)
Q Consensus 470 sdYlWY~t~v~v~~~~~~~~~~~~~~L~v~s~~h~~~VfVNG~~iGs~~g~~~~~~f~f~~~i-~L~~G~N~IslLs~tv 548 (637)
.--.||- +|.+++.. ....|.+.+.|- -.|||||+-+|...-..+. +.++-.|- =|+++.|.|.|+=+.-
T Consensus 556 ~P~~w~k-~f~~p~g~------~~t~Ldm~g~GK-G~vwVNG~niGRYW~~~G~-Q~~yhvPr~~Lk~~~N~lvvfEee~ 626 (649)
T KOG0496|consen 556 QPLTWYK-TFDIPSGS------EPTALDMNGWGK-GQVWVNGQNIGRYWPSFGP-QRTYHVPRSWLKPSGNLLVVFEEEG 626 (649)
T ss_pred CCeEEEE-EecCCCCC------CCeEEecCCCcc-eEEEECCcccccccCCCCC-ceEEECcHHHhCcCCceEEEEEecc
Confidence 3468998 77776542 235788888875 4689999999987643222 44544443 3788999999888777
Q ss_pred cccc
Q 006635 549 GLPN 552 (637)
Q Consensus 549 Gl~n 552 (637)
|-++
T Consensus 627 ~~p~ 630 (649)
T KOG0496|consen 627 GDPN 630 (649)
T ss_pred CCCc
Confidence 6555
No 54
>PRK05402 glycogen branching enzyme; Provisional
Probab=91.17 E-value=2.2 Score=51.02 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=37.1
Q ss_pred HHHHHHCCCCEEEE-cccCC----cCCCCCcee-----eecCcccHHHHHHHHHHcCCEEEEec
Q 006635 64 IRKAKDGGLDVIDT-YVFWN----GHEPSPGHY-----NFEGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 64 l~k~K~~G~N~I~~-yvfWn----~hEp~~G~y-----dF~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
|.-+|++|+|+|+. +|+=. .|--.+..| .|.+..||.+|++.|+++||.|||..
T Consensus 272 ~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 272 IPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 46779999999996 55410 011111111 24445799999999999999999983
No 55
>PRK14706 glycogen branching enzyme; Provisional
Probab=90.85 E-value=3.9 Score=48.23 Aligned_cols=52 Identities=15% Similarity=0.252 Sum_probs=36.0
Q ss_pred HHHHHHHCCCCEEEE-ccc-------CCcC-----CCCCceeeecCcccHHHHHHHHHHcCCEEEEec
Q 006635 63 LIRKAKDGGLDVIDT-YVF-------WNGH-----EPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 63 ~l~k~K~~G~N~I~~-yvf-------Wn~h-----Ep~~G~ydF~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
.+.-+|++|+|+|+. .|. |... .|.+ .|....||.+|++.|+++||.|||..
T Consensus 173 l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~---~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 173 LGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTS---RLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHHHcCCCEEEccchhcCCCCCCCCcCccccccccc---ccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 346789999999995 332 2211 0100 12344799999999999999999883
No 56
>smart00642 Aamy Alpha-amylase domain.
Probab=90.74 E-value=0.72 Score=44.97 Aligned_cols=68 Identities=13% Similarity=0.122 Sum_probs=46.5
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCcCC-------CCCcee-----eecCcccHHHHHHHHHHcCCEEEEecCceeeee
Q 006635 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHE-------PSPGHY-----NFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAE 124 (637)
Q Consensus 57 ~~~W~~~l~k~K~~G~N~I~~yvfWn~hE-------p~~G~y-----dF~g~~dL~~fl~la~~~GL~vilr~GPyi~aE 124 (637)
-+.+.+.|..+|++|+|+|..-=++...+ -.+..| .|....+|++|++.|+++||.||+..=|--++.
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 44566777789999999999753332221 112222 344557999999999999999999975444343
No 57
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=90.45 E-value=30 Score=37.66 Aligned_cols=238 Identities=13% Similarity=0.141 Sum_probs=106.5
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-------cccCCcCCCCCceeeecCccc-HHHHHHHHHHcCCEEEEecCceeeeecCC
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDT-------YVFWNGHEPSPGHYNFEGSYD-LVRFIKTVQRVGLYAHLRIGPYVCAEWNF 127 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~-------yvfWn~hEp~~G~ydF~g~~d-L~~fl~la~~~GL~vilr~GPyi~aEw~~ 127 (637)
.++.| ++.+|++|+.-|=. +-.|...-..-..-+-...+| +..|.+.|+++||++-+=..| ++|..
T Consensus 92 D~dqW---~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~---~dw~~ 165 (346)
T PF01120_consen 92 DADQW---AKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSP---WDWHH 165 (346)
T ss_dssp -HHHH---HHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEES---SSCCC
T ss_pred CHHHH---HHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecc---hHhcC
Confidence 44444 67889999987642 333665433322222222344 567999999999977663322 35554
Q ss_pred CCCCcccccCCCeeeecCChhhHHHHH-HHHHHHHHHHHhccc--cccCCCceEEccccccccCCccccCcccHHHHHHH
Q 006635 128 GGFPVWLKYVPGISFRTDNGPFKVAMQ-GFTQKIVQMMKNEKL--FASQGGPIILSQIENEYGPESKSLGAAGHAYVNWA 204 (637)
Q Consensus 128 GG~P~WL~~~p~i~~Rt~~~~y~~~~~-~~~~~i~~~l~~~~l--~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l 204 (637)
...+.-...... ......+.+.+.+. .+..+|-+.+.++++ ++-+||.- . .....-...+
T Consensus 166 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~--------~--------~~~~~~~~~~ 228 (346)
T PF01120_consen 166 PDYPPDEEGDEN-GPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGWP--------D--------PDEDWDSAEL 228 (346)
T ss_dssp TTTTSSCHCHHC-C--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTTS--------C--------CCTHHHHHHH
T ss_pred cccCCCccCCcc-cccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCCC--------c--------cccccCHHHH
Confidence 333222111000 00112334445555 455556666654432 12222210 0 0111122555
Q ss_pred HHHHhcCCCCcceeeecCCCCCCccccCCCCCcc-CCCCCCC-CCCCceeeee-ccccccccCCCccCCCHHHHHHHHHH
Q 006635 205 AKMAVGLDTGVPWVMCKEDDAPDPVINSCNGFYC-DAFSPNK-PYKPTLWTEA-WSGWFTEFGGAVHRRPVQDLAFAVAR 281 (637)
Q Consensus 205 ~~~~~~~g~~vP~~~~~~~~~p~~vi~~~ng~~~-~~~~~~~-~~~P~~~tE~-~~Gwf~~wG~~~~~r~~~d~a~~~~~ 281 (637)
.++.+++.-++.+..+......... .+.+ +...+.. ...|--.+.- -.+||- =-.....++++.+...+..
T Consensus 229 ~~~i~~~qp~~ii~~r~~~~~~~~~-----d~~~~E~~~~~~~~~~pwE~~~ti~~~W~y-~~~~~~~ks~~~li~~l~~ 302 (346)
T PF01120_consen 229 YNWIRKLQPDVIINNRWGGNEQGDG-----DYNTPERGIPGEIQGRPWETCTTIGPSWGY-NTPDEKYKSADELIDILVD 302 (346)
T ss_dssp HHHHHHHSTTSEEECCCSSCSSCCB-----SCCEECTTBTTTEEESEEEEEEESSSSSS--CGGGCGS--HHHHHHHHHH
T ss_pred HHHHHHhCCeEEEecccCCCCCccc-----cccchhccCCCCCCCCCccccCcCCCCCcc-cCCCCCcCCHHHHHHHHHH
Confidence 6666666554432211111100000 0011 1111110 0111111111 234433 0112344688889888889
Q ss_pred HHHhCCee-eeeeEeecCCCCCCCCCCCcccccccCCCCCCCCCCCCchhHHHHHHHHHHHHhhhccc
Q 006635 282 FIQKGGSF-FNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKLCEYAL 348 (637)
Q Consensus 282 ~~~~g~s~-~nyYM~hGGTNfG~~~G~~~~~tSYDy~Apl~E~G~~~~pky~~lk~lh~~l~~~~~~L 348 (637)
..++||++ +|. +.+.+|.+.++.-..|+++...|+..+.++
T Consensus 303 ~vs~ngnlLLNi--------------------------gP~~dG~ip~~~~~~L~e~G~Wl~~ngeaI 344 (346)
T PF01120_consen 303 SVSRNGNLLLNI--------------------------GPDPDGTIPEEQVERLREIGDWLKVNGEAI 344 (346)
T ss_dssp HHTBTEEEEEEE-----------------------------TTSS--HHHHHHHHHHHHHHHHHGGGT
T ss_pred HhccCceEEEec--------------------------CCCCCCCcCHHHHHHHHHHHHHHHhccccc
Confidence 99999884 443 245678877778889999999999877654
No 58
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=90.08 E-value=3.2 Score=44.59 Aligned_cols=117 Identities=20% Similarity=0.256 Sum_probs=70.1
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCc-------CCCC-------CceeeecCcccHHHHHHHHHHcCCEEEEecCcee
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNG-------HEPS-------PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYV 121 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~yvfWn~-------hEp~-------~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi 121 (637)
.++.-++.|++++++|||+|-.=|-+.. .+|. +|. + .|..-|..+|+.|++.||.|+.++ .+-
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~-~-pg~DpL~~~I~eaHkrGlevHAW~-~~~ 93 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGK-D-PGFDPLEFMIEEAHKRGLEVHAWF-RVG 93 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCC-C-CCccHHHHHHHHHHHcCCEEEEEE-Eee
Confidence 6788899999999999999975444321 2221 111 1 012269999999999999999776 111
Q ss_pred eeecCC----CCCCcccc-cCCCeeeec----C-----ChhhHHHHHHHHHHHHHH-HHhccccccCCCceEEccccc
Q 006635 122 CAEWNF----GGFPVWLK-YVPGISFRT----D-----NGPFKVAMQGFTQKIVQM-MKNEKLFASQGGPIILSQIEN 184 (637)
Q Consensus 122 ~aEw~~----GG~P~WL~-~~p~i~~Rt----~-----~~~y~~~~~~~~~~i~~~-l~~~~l~~~~gGpII~~QIEN 184 (637)
...-.. -.-|.|+. +.|+..... . || -..+++.|+..++.. ++++ +|=++|++-
T Consensus 94 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP-~~PeVr~~i~~~v~Eiv~~Y--------dvDGIhlDd 162 (311)
T PF02638_consen 94 FNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNP-GHPEVRDYIIDIVKEIVKNY--------DVDGIHLDD 162 (311)
T ss_pred cCCCchhhhhhcCchhheecCCCceeecccCCCCceEECC-CCHHHHHHHHHHHHHHHhcC--------CCCeEEecc
Confidence 110011 12478875 456543333 1 23 346777777665554 4544 355678773
No 59
>PRK12568 glycogen branching enzyme; Provisional
Probab=89.83 E-value=6.6 Score=46.97 Aligned_cols=57 Identities=23% Similarity=0.397 Sum_probs=39.8
Q ss_pred HHHHHHHHHCCCCEEEE-ccc-------CCcCCCCCcee----eecCcccHHHHHHHHHHcCCEEEEecCc
Q 006635 61 EDLIRKAKDGGLDVIDT-YVF-------WNGHEPSPGHY----NFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (637)
Q Consensus 61 ~~~l~k~K~~G~N~I~~-yvf-------Wn~hEp~~G~y----dF~g~~dL~~fl~la~~~GL~vilr~GP 119 (637)
++.|.-+|++|+|+|+. +|+ |... | -|-| .|....++.+|++.|+++||.|||..=|
T Consensus 273 ~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~-~-~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 273 EQLIPYVQQLGFTHIELLPITEHPFGGSWGYQ-P-LGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHHHcCCCEEEECccccCCCCCCCCCC-C-CcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 34568889999999996 443 3211 0 0111 2445579999999999999999998543
No 60
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=89.55 E-value=0.64 Score=50.90 Aligned_cols=73 Identities=23% Similarity=0.213 Sum_probs=49.3
Q ss_pred EEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEecCceeeee
Q 006635 46 ISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAE 124 (637)
Q Consensus 46 ~sG~~Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aE 124 (637)
++=++.+...+.+.....|++|++.|+..|=| .+|.|+...=+.. ..+..++++|++.||.|++.+.|=+...
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~~--~~~~~l~~~a~~~~~~v~~Disp~~l~~ 74 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDYL--ERLKELLKLAKELGMEVIADISPKVLKK 74 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEE----EE---------HH--HHHHHHHHHHHHCT-EEEEEE-CCHHHT
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHHH--HHHHHHHHHHHHCCCEEEEECCHHHHHH
Confidence 45567777778999999999999999998877 7899985432221 3789999999999999999998755443
No 61
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=89.51 E-value=4.6 Score=46.40 Aligned_cols=150 Identities=16% Similarity=0.251 Sum_probs=96.5
Q ss_pred cCcEEECCEEeEEEEEEeeCC-----CCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHH
Q 006635 33 RKAILINGQRRILISGSIHYP-----RSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQ 107 (637)
Q Consensus 33 ~~~l~idG~~~~l~sG~~Hy~-----r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~ 107 (637)
+..|.|+|.|.++.++.--++ |.+-+.-+-.|+-++++|+|++++ |.. |. ..-+.|.++|.
T Consensus 327 nfyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WGG-----Gv------YEsd~FY~lad 392 (867)
T KOG2230|consen 327 NFYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WGG-----GV------YESDYFYQLAD 392 (867)
T ss_pred eeEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ecC-----cc------ccchhHHHHhh
Confidence 457899999999888775542 334455566899999999999998 432 22 33489999999
Q ss_pred HcCCEEEEecCceeeeecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEcccccc--
Q 006635 108 RVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENE-- 185 (637)
Q Consensus 108 ~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENE-- 185 (637)
+.||.|--.. =|.||- --.|..|+..++.=++.=+..|+.|+ .||.+-=.||
T Consensus 393 ~lGilVWQD~-MFACAl------------------YPt~~eFl~sv~eEV~yn~~Rls~Hp-------SviIfsgNNENE 446 (867)
T KOG2230|consen 393 SLGILVWQDM-MFACAL------------------YPTNDEFLSSVREEVRYNAMRLSHHP-------SVIIFSGNNENE 446 (867)
T ss_pred hccceehhhh-HHHhhc------------------ccCcHHHHHHHHHHHHHHHHhhccCC-------eEEEEeCCCccH
Confidence 9999875332 133443 22467888888887777777777554 5776654444
Q ss_pred ccCCccccCc-------ccHH----HHHHHHHHHhcCCCCcceeeecC
Q 006635 186 YGPESKSLGA-------AGHA----YVNWAAKMAVGLDTGVPWVMCKE 222 (637)
Q Consensus 186 yg~~~~~~~~-------~~~~----y~~~l~~~~~~~g~~vP~~~~~~ 222 (637)
=.-.+.-|+. .-++ |.+-+++++..-.-..|+||...
T Consensus 447 aAl~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSP 494 (867)
T KOG2230|consen 447 AALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSP 494 (867)
T ss_pred HHHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCC
Confidence 2111111221 2233 34445566666666789888653
No 62
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=89.44 E-value=8.8 Score=46.12 Aligned_cols=62 Identities=16% Similarity=0.226 Sum_probs=44.0
Q ss_pred HhHHHHHHHHHHHCCCCEEEEc-cc-------CCcCCC---CCceeeecCcccHHHHHHHHHHcCCEEEEecCc
Q 006635 57 PEMWEDLIRKAKDGGLDVIDTY-VF-------WNGHEP---SPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (637)
Q Consensus 57 ~~~W~~~l~k~K~~G~N~I~~y-vf-------Wn~hEp---~~G~ydF~g~~dL~~fl~la~~~GL~vilr~GP 119 (637)
.+.|++.|..+|++|+|+|+.- |+ |..+-. .+ .-.|....+|.+|++.|+++||.|||..=|
T Consensus 250 ~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~ 322 (758)
T PLN02447 250 REFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDVVH 322 (758)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4558889999999999999963 32 322210 00 013445579999999999999999998533
No 63
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=88.61 E-value=4.1 Score=42.30 Aligned_cols=97 Identities=11% Similarity=0.120 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHc-CCEEEEecCceeeeecCCCCCCccccc
Q 006635 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRV-GLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (637)
Q Consensus 58 ~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~-GL~vilr~GPyi~aEw~~GG~P~WL~~ 136 (637)
..|++.|+.+|++|++.|+.-+........+ .....++.++.++++++ ++.+.+- +||. +
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~i~~~-~~~~------------~-- 70 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR----PLKKERAEKFKAIAEEGPSICLSVH-APYL------------I-- 70 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC----CCCHHHHHHHHHHHHHcCCCcEEEE-cCce------------e--
Confidence 6799999999999999999866432111111 11345899999999999 6665543 2331 0
Q ss_pred CCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEcccc
Q 006635 137 VPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIE 183 (637)
Q Consensus 137 ~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIE 183 (637)
.+...++.-+++....+++.++..+ .+ |-+.|.+...
T Consensus 71 ----~~~~~~~~~r~~~~~~~~~~i~~A~--~l----G~~~v~~~~g 107 (279)
T cd00019 71 ----NLASPDKEKREKSIERLKDEIERCE--EL----GIRLLVFHPG 107 (279)
T ss_pred ----ccCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEECCC
Confidence 1222344445555566666666666 33 4456666544
No 64
>PRK14705 glycogen branching enzyme; Provisional
Probab=88.23 E-value=8.1 Score=48.76 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=38.8
Q ss_pred HHHHHHHHHCCCCEEEE-ccc-------CCcCC--CCCceeeecCcccHHHHHHHHHHcCCEEEEec
Q 006635 61 EDLIRKAKDGGLDVIDT-YVF-------WNGHE--PSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 61 ~~~l~k~K~~G~N~I~~-yvf-------Wn~hE--p~~G~ydF~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
++.|.-+|++|+|+|+. +|+ |...- ...=.=.|....||.+|++.|+++||.|||..
T Consensus 769 ~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 769 KELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 34578899999999996 453 32110 00000124455799999999999999999983
No 65
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=87.58 E-value=5.5 Score=41.18 Aligned_cols=130 Identities=16% Similarity=0.238 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEE-EecCceeeeecCCCCCCcccccC
Q 006635 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH-LRIGPYVCAEWNFGGFPVWLKYV 137 (637)
Q Consensus 59 ~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vi-lr~GPyi~aEw~~GG~P~WL~~~ 137 (637)
.|++.++.++++|++.|+..+. ..|+ .....+|+ ..++..+.++++++||.+. +.++.+ + .+
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~~~----~---~~------- 79 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIPSMCLSGH----R---RF------- 79 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCceEEecccc----c---Cc-------
Confidence 5899999999999999999532 2221 01122333 3478999999999999875 332210 0 01
Q ss_pred CCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEccccccccCCc--cccCcccHHHHHHHHHHHhcCCCCc
Q 006635 138 PGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPES--KSLGAAGHAYVNWAAKMAVGLDTGV 215 (637)
Q Consensus 138 p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~--~~~~~~~~~y~~~l~~~~~~~g~~v 215 (637)
.+.+.|+..++...+.++++++..+ .+ |.+.|-+---..+.... ..+ ..-.+.++.+.++|.+.|+.+
T Consensus 80 ---~~~~~d~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~l 149 (284)
T PRK13210 80 ---PFGSRDPATRERALEIMKKAIRLAQ--DL----GIRTIQLAGYDVYYEEKSEETR-QRFIEGLAWAVEQAAAAQVML 149 (284)
T ss_pred ---CCCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEECCcccccccccHHHH-HHHHHHHHHHHHHHHHhCCEE
Confidence 1223456666666667777777777 33 45665442100000000 000 112356777888888887764
No 66
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=86.33 E-value=5.5 Score=38.91 Aligned_cols=93 Identities=20% Similarity=0.318 Sum_probs=44.6
Q ss_pred ccEEEEccCccEEEEEECCEEEEEEE---C-Cccccee---EEEeeEEeeccccEEEEEEeccccc---cc----cCcce
Q 006635 493 KPTLTVESAGHAVHVFINGQFLGSAF---G-TRENRRF---TFSGPANLRAGINKIALLSIAVGLP---NV----GLHYE 558 (637)
Q Consensus 493 ~~~L~v~s~~h~~~VfVNG~~iGs~~---g-~~~~~~f---~f~~~i~L~~G~N~IslLs~tvGl~---n~----G~~~e 558 (637)
++.|.|.+.+ ...+||||+.||... | +.-.+.. +++..=-|+.|.|.|.+++.+-... .. ...+.
T Consensus 5 ~A~l~isa~g-~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw~~~~~~~~~~~~~~~~ 83 (172)
T PF08531_consen 5 SARLYISALG-RYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGWYNGRIGFGGFPRARYG 83 (172)
T ss_dssp --EEEEEEES-EEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--S----------BTTB-
T ss_pred EEEEEEEeCe-eEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCccccccccccccccccC
Confidence 4678877765 788999999999865 1 1111111 2332225888999999998763222 11 11122
Q ss_pred eeeceeeeEEEEeecCCCccc--CCCCcceEe
Q 006635 559 TWETGVRGAVVLHGLDHGNKD--LTWQKWSYQ 588 (637)
Q Consensus 559 ~~~aGI~g~V~l~g~~~g~~d--Ls~~~W~yq 588 (637)
...++.-.+.|.- .+|+.. -|...|...
T Consensus 84 -~~~~l~~~l~i~~-~DG~~~~i~TD~sW~~~ 113 (172)
T PF08531_consen 84 -GRPALLAQLEITY-ADGTTEVIVTDESWKCS 113 (172)
T ss_dssp ----EEEEEEEE----TTEEEE-E-STTSEEE
T ss_pred -CCceeEEEEEEEe-cCCCEEEeccCCCeeee
Confidence 4555554444422 234322 256788877
No 67
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=85.70 E-value=4 Score=46.44 Aligned_cols=69 Identities=22% Similarity=0.331 Sum_probs=43.9
Q ss_pred EEEeeCCCCCHhHHHHHHHHHH-HCCCCEEEEc-cc---CCcC-C-CCCc--eeeecCcccHHHHHHHHHHcCCEEEEec
Q 006635 47 SGSIHYPRSTPEMWEDLIRKAK-DGGLDVIDTY-VF---WNGH-E-PSPG--HYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 47 sG~~Hy~r~~~~~W~~~l~k~K-~~G~N~I~~y-vf---Wn~h-E-p~~G--~ydF~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
-|+-|.....++.|+..|+.++ +.||.-|+.. +| .... | ..+| .|||+ .|+.++|...+.||+-.+..
T Consensus 28 ~~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~vel 104 (486)
T PF01229_consen 28 VGSGRANLLLRADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPFVEL 104 (486)
T ss_dssp EEES-GGGGGBHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEEEEE
T ss_pred cCCCchHHHhhHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEEEEE
Confidence 3555555567788999998886 8899999973 22 1111 1 1233 39999 89999999999999988887
Q ss_pred C
Q 006635 118 G 118 (637)
Q Consensus 118 G 118 (637)
|
T Consensus 105 ~ 105 (486)
T PF01229_consen 105 G 105 (486)
T ss_dssp -
T ss_pred E
Confidence 6
No 68
>PRK12313 glycogen branching enzyme; Provisional
Probab=85.56 E-value=9.4 Score=44.97 Aligned_cols=56 Identities=14% Similarity=0.224 Sum_probs=38.2
Q ss_pred HHHHHHHHCCCCEEEE-ccc-CC---cCCCCCcee-----eecCcccHHHHHHHHHHcCCEEEEec
Q 006635 62 DLIRKAKDGGLDVIDT-YVF-WN---GHEPSPGHY-----NFEGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 62 ~~l~k~K~~G~N~I~~-yvf-Wn---~hEp~~G~y-----dF~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
+.|.-+|++|+|+|.. +|+ .. .|--.+-.| .|.+..||.+|++.|+++||.|||..
T Consensus 175 ~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 175 ELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3468899999999995 554 10 010000001 24456799999999999999999984
No 69
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=85.09 E-value=1.3 Score=42.83 Aligned_cols=125 Identities=12% Similarity=0.092 Sum_probs=72.8
Q ss_pred HHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCeeee
Q 006635 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFR 143 (637)
Q Consensus 64 l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~i~~R 143 (637)
|+.++++|++.|+............ ...++++.++++++||.+..--.+ . .+. . +....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~-~--~~~---~-------~~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPP-T--NFW---S-------PDEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEE-E--SSS---C-------TGTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecc-c--ccc---c-------cccccc
Confidence 5789999999999965533222211 347899999999999996532211 1 010 0 111123
Q ss_pred cCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEcccc--ccccCCc-cccCcccHHHHHHHHHHHhcCCCCc
Q 006635 144 TDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIE--NEYGPES-KSLGAAGHAYVNWAAKMAVGLDTGV 215 (637)
Q Consensus 144 t~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIE--NEyg~~~-~~~~~~~~~y~~~l~~~~~~~g~~v 215 (637)
+.+++ ++...+.+.+.++..+ .+ |.+.|.+..- +...... ...-+.-.+.++.+.+++.+.|+.+
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~--~l----g~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAK--RL----GAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHH--HH----TBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred Ccchh-hHHHHHHHHHHHHHHH--Hh----CCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceE
Confidence 34444 7777778888888888 33 5566766643 1111110 0000123457777778887777654
No 70
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=85.08 E-value=3.3 Score=44.70 Aligned_cols=112 Identities=17% Similarity=0.292 Sum_probs=71.1
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-------cccCCcCCCCCceeeec-C-cccHHHHHHHHHHcCCEEEEecCceeeeecC
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDT-------YVFWNGHEPSPGHYNFE-G-SYDLVRFIKTVQRVGLYAHLRIGPYVCAEWN 126 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~-------yvfWn~hEp~~G~ydF~-g-~~dL~~fl~la~~~GL~vilr~GPyi~aEw~ 126 (637)
.++.-++.|+.+|+.|+|+|-+ .|.+..-.|..-+..-. . -.|+.++++.++++|+|+|.|+=-|--..-
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~l- 89 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVL- 89 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecChHH-
Confidence 4566789999999999999874 34455544443333222 1 269999999999999999999732221000
Q ss_pred CCCCCcccccC-CCeeeecCC-----hhhHHHHHHHHHHHHHHHHhcc
Q 006635 127 FGGFPVWLKYV-PGISFRTDN-----GPFKVAMQGFTQKIVQMMKNEK 168 (637)
Q Consensus 127 ~GG~P~WL~~~-p~i~~Rt~~-----~~y~~~~~~~~~~i~~~l~~~~ 168 (637)
..--|.|-.+. .|-..|..+ .||.+++.+|.-.|++.+++.+
T Consensus 90 a~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~G 137 (316)
T PF13200_consen 90 AEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKLG 137 (316)
T ss_pred hhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHcC
Confidence 00135554321 121122211 3688999999999999998554
No 71
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.92 E-value=6.6 Score=43.91 Aligned_cols=123 Identities=20% Similarity=0.282 Sum_probs=79.6
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEE------cc-------cCCcCCCCCceee-ecCcccHHHHHHHHHHcCCEEEEecCce
Q 006635 55 STPEMWEDLIRKAKDGGLDVIDT------YV-------FWNGHEPSPGHYN-FEGSYDLVRFIKTVQRVGLYAHLRIGPY 120 (637)
Q Consensus 55 ~~~~~W~~~l~k~K~~G~N~I~~------yv-------fWn~hEp~~G~yd-F~g~~dL~~fl~la~~~GL~vilr~GPy 120 (637)
..+++-.+.|.+++++|+|||-. |. +|..-- ||..- =.|..-|...|++|++.||.|+-+.=||
T Consensus 61 ~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~ 138 (418)
T COG1649 61 FQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPY 138 (418)
T ss_pred ccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhc
Confidence 36788889999999999999963 22 233322 33221 1244468888999999999999998777
Q ss_pred eeeecCCCC---CCcccccC-CCee-eecCC-------hhhHHHHHHHHHH-HHHHHHhccccccCCCceEEcccccccc
Q 006635 121 VCAEWNFGG---FPVWLKYV-PGIS-FRTDN-------GPFKVAMQGFTQK-IVQMMKNEKLFASQGGPIILSQIENEYG 187 (637)
Q Consensus 121 i~aEw~~GG---~P~WL~~~-p~i~-~Rt~~-------~~y~~~~~~~~~~-i~~~l~~~~l~~~~gGpII~~QIENEyg 187 (637)
..|--..-. -|.|+... |+.. .|.+. .++..+++.|+.. ++++++++ .|-++|++.=++
T Consensus 139 ~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Y--------dvDGIQfDd~fy 210 (418)
T COG1649 139 RMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNY--------DVDGIQFDDYFY 210 (418)
T ss_pred ccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCC--------CCCceecceeec
Confidence 765321111 26666543 4433 23331 2456778888777 66677744 467889887766
No 72
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=84.52 E-value=12 Score=40.74 Aligned_cols=139 Identities=15% Similarity=0.239 Sum_probs=90.5
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHH---HcCCEEEEecCceeeeecCCCCCC
Q 006635 55 STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQ---RVGLYAHLRIGPYVCAEWNFGGFP 131 (637)
Q Consensus 55 ~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~---~~GL~vilr~GPyi~aEw~~GG~P 131 (637)
..|+..+.-++.||+.|++.--.|-.| |.|++-|.+-++..- +.+|...|+ |.+-.|..
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Yw-----------f~gk~lLe~p~~~~l~~~~~d~pFcl~---WAN~~w~~---- 116 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYW-----------FNGKRLLEKPLENLLASKEPDFPFCLC---WANENWTR---- 116 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeee-----------cCCchHHHHHHHHHHhcCCCCCcEEEE---ECCChhhh----
Confidence 478889999999999999999988777 446666777666553 345555555 22333311
Q ss_pred cccccCCCeeeecCChhhH--HHHHHHHHHHHHHHHhccccccCCCceEEccccccccCCccccCcccHHHHHHHHHHHh
Q 006635 132 VWLKYVPGISFRTDNGPFK--VAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAV 209 (637)
Q Consensus 132 ~WL~~~p~i~~Rt~~~~y~--~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~ 209 (637)
.|-.....+.+- ..|. +..+++++.|++.+++..++--+|-||+++==-.+. ..-++.++.+++.|+
T Consensus 117 ~w~g~~~~~l~~---q~y~~~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a~ 185 (345)
T PF14307_consen 117 RWDGRNNEILIE---QKYSGEDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEAK 185 (345)
T ss_pred ccCCCCcccccc---ccCCchhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHHH
Confidence 222221222111 1121 334677888889999888877889999987322221 246789999999999
Q ss_pred cCCCCcceeeecC
Q 006635 210 GLDTGVPWVMCKE 222 (637)
Q Consensus 210 ~~g~~vP~~~~~~ 222 (637)
+.|++-+.+....
T Consensus 186 ~~G~~giyii~~~ 198 (345)
T PF14307_consen 186 EAGLPGIYIIAVQ 198 (345)
T ss_pred HcCCCceEEEEEe
Confidence 9999866554443
No 73
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=84.22 E-value=4.5 Score=51.21 Aligned_cols=112 Identities=18% Similarity=0.285 Sum_probs=69.1
Q ss_pred cEEECCEEeEEEEE---EeeCCCC--CHhHHHHHHHHHHHCCCCEEEE-cccCCcCC--C--CCceee----e----cCc
Q 006635 35 AILINGQRRILISG---SIHYPRS--TPEMWEDLIRKAKDGGLDVIDT-YVFWNGHE--P--SPGHYN----F----EGS 96 (637)
Q Consensus 35 ~l~idG~~~~l~sG---~~Hy~r~--~~~~W~~~l~k~K~~G~N~I~~-yvfWn~hE--p--~~G~yd----F----~g~ 96 (637)
.|.|||++.+.+.+ +-..++. +-+.|++.|+.+|+.|+|+|.. +++=-... | ..+++. | .+.
T Consensus 104 ~L~i~~~~~lPl~~i~iqTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~ 183 (1464)
T TIGR01531 104 MLYINADKFLPLDSIALQTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGK 183 (1464)
T ss_pred eeEECCCcccCcCceeeeeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcH
Confidence 45566644444322 2224554 6688999999999999999985 45411101 1 123332 3 255
Q ss_pred ccHHHHHHHHHHc-CCEEEEecCceeeeecCCCCC-CcccccCCCeeeecCChhhHHH
Q 006635 97 YDLVRFIKTVQRV-GLYAHLRIGPYVCAEWNFGGF-PVWLKYVPGISFRTDNGPFKVA 152 (637)
Q Consensus 97 ~dL~~fl~la~~~-GL~vilr~GPyi~aEw~~GG~-P~WL~~~p~i~~Rt~~~~y~~~ 152 (637)
.|+.++++.|++. ||++|+..= ||.-+. =.||.++|+.-....+.++|+.
T Consensus 184 ~d~~~lV~~~h~~~Gm~~ilDvV------~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~~ 235 (1464)
T TIGR01531 184 NDVQALVEKLHRDWNVLSITDIV------FNHTANNSPWLLEHPEAAYNCITSPHLRP 235 (1464)
T ss_pred HHHHHHHHHHHHhcCCEEEEEee------ecccccCCHHHHhChHhhcCCCCCchhhh
Confidence 7899999999985 999998851 444333 3588888875444445555544
No 74
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=82.72 E-value=18 Score=40.16 Aligned_cols=136 Identities=15% Similarity=0.139 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHCCCCEEEEc----ccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEE-EecCceeeeecCCCCCCc
Q 006635 58 EMWEDLIRKAKDGGLDVIDTY----VFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH-LRIGPYVCAEWNFGGFPV 132 (637)
Q Consensus 58 ~~W~~~l~k~K~~G~N~I~~y----vfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vi-lr~GPyi~aEw~~GG~P~ 132 (637)
....+.+++++++|++.|+.. ++|..-+.+. ..++.++-++++++||.|. +-++-+.+..+..|
T Consensus 32 ~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~-------~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g---- 100 (382)
T TIGR02631 32 LDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQER-------DQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDG---- 100 (382)
T ss_pred cCHHHHHHHHHHhCCCEEEecccccCCCCCChhHH-------HHHHHHHHHHHHHhCCeEEEeeccccCCccccCC----
Confidence 445689999999999999963 1221111100 2357889999999999975 33321111111111
Q ss_pred ccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEccccc---cccCCccccCcc---cHHHHHHHHH
Q 006635 133 WLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIEN---EYGPESKSLGAA---GHAYVNWAAK 206 (637)
Q Consensus 133 WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIEN---Eyg~~~~~~~~~---~~~y~~~l~~ 206 (637)
-+-+.|+..+++.-+.+++.++.-+ .+ |.+.|.+--.- ||... ..+... -.+.++.+.+
T Consensus 101 --------~las~d~~vR~~ai~~~kraId~A~--eL----Ga~~v~v~~G~~g~~~~~~-~d~~~a~~~~~e~L~~lae 165 (382)
T TIGR02631 101 --------GFTSNDRSVRRYALRKVLRNMDLGA--EL----GAETYVVWGGREGAEYDGA-KDVRAALDRMREALNLLAA 165 (382)
T ss_pred --------CCCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEEccCCCCCcCccc-cCHHHHHHHHHHHHHHHHH
Confidence 2334467666665566677666666 33 44544332211 11100 001111 2344555566
Q ss_pred HHhcCCCCcceee
Q 006635 207 MAVGLDTGVPWVM 219 (637)
Q Consensus 207 ~~~~~g~~vP~~~ 219 (637)
.|.+.|.+|.+..
T Consensus 166 ~A~~~G~GV~laL 178 (382)
T TIGR02631 166 YAEDQGYGLRFAL 178 (382)
T ss_pred HHHhhCCCcEEEE
Confidence 6677776665443
No 75
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=82.62 E-value=9.1 Score=39.69 Aligned_cols=125 Identities=14% Similarity=0.249 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEE-EecCceeeeecCCCCCCcccccC
Q 006635 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH-LRIGPYVCAEWNFGGFPVWLKYV 137 (637)
Q Consensus 59 ~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vi-lr~GPyi~aEw~~GG~P~WL~~~ 137 (637)
.|++.++.++++|++.|+..+. ..++ ....++++ ..++.++-++++++||.|. +.++.. ..+|
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~-------~~~~------ 85 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAH-------RRFP------ 85 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEecccc-------cccC------
Confidence 4899999999999999999532 1111 01122333 2368899999999999874 333211 0011
Q ss_pred CCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEccccccccCCccccCc-------ccHHHHHHHHHHHhc
Q 006635 138 PGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGA-------AGHAYVNWAAKMAVG 210 (637)
Q Consensus 138 p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~-------~~~~y~~~l~~~~~~ 210 (637)
+-+.++.-++...+.+++.++..+ .+ |.++|.+. |.. ..++. .-.+.++.+.++|++
T Consensus 86 ----~~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~i~~~-----~~~-~~~~~~~~~~~~~~~~~l~~l~~~A~~ 149 (283)
T PRK13209 86 ----LGSEDDAVRAQALEIMRKAIQLAQ--DL----GIRVIQLA-----GYD-VYYEQANNETRRRFIDGLKESVELASR 149 (283)
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEC-----Ccc-ccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 113455566666777777777777 33 56666542 110 00111 113566777888877
Q ss_pred CCCCc
Q 006635 211 LDTGV 215 (637)
Q Consensus 211 ~g~~v 215 (637)
.|+.+
T Consensus 150 ~GV~i 154 (283)
T PRK13209 150 ASVTL 154 (283)
T ss_pred hCCEE
Confidence 77654
No 76
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=82.52 E-value=1.2 Score=50.03 Aligned_cols=157 Identities=15% Similarity=0.174 Sum_probs=103.0
Q ss_pred cEEECCEEeEEEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcC-CCC---Cceeeec-CcccHHHHHHHHHHc
Q 006635 35 AILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGH-EPS---PGHYNFE-GSYDLVRFIKTVQRV 109 (637)
Q Consensus 35 ~l~idG~~~~l~sG~~Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~h-Ep~---~G~ydF~-g~~dL~~fl~la~~~ 109 (637)
.|.++++++-.++..--+++.--++-+++|+-|+.+|+++++.. -+- |+- +|.-+-. +..-++.|++.|.++
T Consensus 3 ~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l 79 (587)
T COG3934 3 VFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYL 79 (587)
T ss_pred eEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccC
Confidence 37777877777776666777777778889999999999999985 344 663 3322222 234689999999999
Q ss_pred CCEEEEecCceeeeecCCCCC---Ccccc-cCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEcccccc
Q 006635 110 GLYAHLRIGPYVCAEWNFGGF---PVWLK-YVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENE 185 (637)
Q Consensus 110 GL~vilr~GPyi~aEw~~GG~---P~WL~-~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENE 185 (637)
+|+|+++. |.+==..||. -.|.- +.|+-.. -|+.++..-++|...+++-.|. ...|.+|-+-||
T Consensus 80 ~lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~i--yD~k~~~~~kkyvedlVk~yk~-------~ptI~gw~l~Ne 147 (587)
T COG3934 80 DLKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNVI--YDPKFRGPGKKYVEDLVKPYKL-------DPTIAGWALRNE 147 (587)
T ss_pred cceEEEEE---eecccccCcceeEeecCCCCCccccc--cchhhcccHHHHHHHHhhhhcc-------ChHHHHHHhcCC
Confidence 99998773 3331123443 12331 1232111 2566666667777777765553 347888999999
Q ss_pred ccCCccccCcccHHHHHHHHHHHh
Q 006635 186 YGPESKSLGAAGHAYVNWAAKMAV 209 (637)
Q Consensus 186 yg~~~~~~~~~~~~y~~~l~~~~~ 209 (637)
.... -...+..+++|+++|+-
T Consensus 148 --~lv~-~p~s~N~f~~w~~emy~ 168 (587)
T COG3934 148 --PLVE-APISVNNFWDWSGEMYA 168 (587)
T ss_pred --cccc-ccCChhHHHHHHHHHHH
Confidence 2211 12357889999999984
No 77
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=81.82 E-value=21 Score=36.76 Aligned_cols=130 Identities=14% Similarity=0.135 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCC
Q 006635 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVP 138 (637)
Q Consensus 59 ~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p 138 (637)
.+++.|+.++++|++.|+...-. .|+-.+ +++ ..++.++-++++++||.|.. .+|. .+++|..+.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~-~~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s-~~~~------~~~~~~~~~--- 78 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGR-PHAFAP---DLK-AGGIKQIKALAQTYQMPIIG-YTPE------TNGYPYNMM--- 78 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCC-cccccc---ccC-chHHHHHHHHHHHcCCeEEE-ecCc------ccCcCcccc---
Confidence 48899999999999999983210 011111 121 24688899999999998753 2221 123333221
Q ss_pred CeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEcccccc-cc-CCccccCcccHHHHHHHHHHHhcCCCCc
Q 006635 139 GISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENE-YG-PESKSLGAAGHAYVNWAAKMAVGLDTGV 215 (637)
Q Consensus 139 ~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENE-yg-~~~~~~~~~~~~y~~~l~~~~~~~g~~v 215 (637)
..++.-+++..+.+++.++.-+ .+ |.+.|.+-.-.. +. .....+ ..-.+.++.|.+.|.+.|+.+
T Consensus 79 -----~~~~~~r~~~~~~~~~~i~~a~--~l----Ga~~i~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~l 145 (275)
T PRK09856 79 -----LGDEHMRRESLDMIKLAMDMAK--EM----NAGYTLISAAHAGYLTPPNVIW-GRLAENLSELCEYAENIGMDL 145 (275)
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEEcCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHcCCEE
Confidence 1234445555556666666666 22 445554421111 00 000001 122356778888888877654
No 78
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=81.73 E-value=1.3 Score=45.38 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=39.2
Q ss_pred HHHHHHHHHCCCCEEEEcccCCcCCCCCc--eee-------ecCcccHHHHHHHHHHcCCEEEEec
Q 006635 61 EDLIRKAKDGGLDVIDTYVFWNGHEPSPG--HYN-------FEGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 61 ~~~l~k~K~~G~N~I~~yvfWn~hEp~~G--~yd-------F~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
.+.|..+|++|+|+|..-=++...+..-| .-| |....+|.++++.|++.||+|||..
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 45688899999999998544332211111 112 2234699999999999999999884
No 79
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=81.36 E-value=18 Score=36.92 Aligned_cols=43 Identities=14% Similarity=0.216 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEE
Q 006635 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (637)
Q Consensus 59 ~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vil 115 (637)
.+++.++++++.|++.|+....+ ..++..+.++++++||.+..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 37899999999999999984321 13688899999999999763
No 80
>PLN02960 alpha-amylase
Probab=80.97 E-value=44 Score=40.95 Aligned_cols=57 Identities=19% Similarity=0.277 Sum_probs=39.3
Q ss_pred HHHHHHHHHCCCCEEEE-ccc-------CCcCCCC--CceeeecCcccHHHHHHHHHHcCCEEEEec
Q 006635 61 EDLIRKAKDGGLDVIDT-YVF-------WNGHEPS--PGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 61 ~~~l~k~K~~G~N~I~~-yvf-------Wn~hEp~--~G~ydF~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
++.|.-+|++|+|+|+. .|+ |...-.- .=.=.|....+|.+|++.|+++||.|||..
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 45689999999999996 453 3211000 000023345799999999999999999984
No 81
>PRK01060 endonuclease IV; Provisional
Probab=80.94 E-value=16 Score=37.82 Aligned_cols=93 Identities=14% Similarity=0.231 Sum_probs=59.2
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEE---EEecCceeeeecCCCCCCccccc
Q 006635 60 WEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA---HLRIGPYVCAEWNFGGFPVWLKY 136 (637)
Q Consensus 60 W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~v---ilr~GPyi~aEw~~GG~P~WL~~ 136 (637)
+++.|++++++|++.|+..+- +-+.-.++.++- .++.++-++++++||.+ .+ -+||.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~-~p~~~~~~~~~~---~~~~~lk~~~~~~gl~~~~~~~-h~~~~--------------- 73 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTG-NPQQWKRKPLEE---LNIEAFKAACEKYGISPEDILV-HAPYL--------------- 73 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCCCcCCCCCH---HHHHHHHHHHHHcCCCCCceEE-ecceE---------------
Confidence 889999999999999998542 112111222221 26888999999999973 22 23331
Q ss_pred CCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEcc
Q 006635 137 VPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQ 181 (637)
Q Consensus 137 ~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~Q 181 (637)
+.+-+.|+..+++..+.+++.++..+ .+ |.++|-+.
T Consensus 74 ---~nl~~~d~~~r~~s~~~~~~~i~~A~--~l----ga~~vv~h 109 (281)
T PRK01060 74 ---INLGNPNKEILEKSRDFLIQEIERCA--AL----GAKLLVFH 109 (281)
T ss_pred ---ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12334567777777777888777777 33 44555554
No 82
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=80.53 E-value=26 Score=35.94 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=38.0
Q ss_pred EeeCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEE
Q 006635 49 SIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (637)
Q Consensus 49 ~~Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vil 115 (637)
++.|-+.+ .++.|++++++|++.|+.. . |. ..++..+.++++++||.+..
T Consensus 9 ~~~~~~~~---l~~~l~~~a~~Gf~~VEl~---~---~~--------~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 9 SMLFGEYD---FLARFEKAAQCGFRGVEFM---F---PY--------DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred ehhccCCC---HHHHHHHHHHhCCCEEEEc---C---CC--------CCCHHHHHHHHHHcCCcEEE
Confidence 34455554 6788999999999999983 1 11 13799999999999999854
No 83
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=79.93 E-value=3.1 Score=47.13 Aligned_cols=61 Identities=8% Similarity=0.229 Sum_probs=42.1
Q ss_pred HhHHH---HHHHHHHHCCCCEEEE-cccCCc-----CCCCC-ceee-------------ecCcccHHHHHHHHHHcCCEE
Q 006635 57 PEMWE---DLIRKAKDGGLDVIDT-YVFWNG-----HEPSP-GHYN-------------FEGSYDLVRFIKTVQRVGLYA 113 (637)
Q Consensus 57 ~~~W~---~~l~k~K~~G~N~I~~-yvfWn~-----hEp~~-G~yd-------------F~g~~dL~~fl~la~~~GL~v 113 (637)
.+.|. +.|.-+|++|+++|.. +++-+. |--.+ .-|| |....||.++++.|++.||+|
T Consensus 18 ~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~v 97 (479)
T PRK09441 18 GKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKV 97 (479)
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEE
Confidence 35565 4566779999999987 455432 22222 1222 234568999999999999999
Q ss_pred EEec
Q 006635 114 HLRI 117 (637)
Q Consensus 114 ilr~ 117 (637)
|+..
T Consensus 98 i~D~ 101 (479)
T PRK09441 98 YADV 101 (479)
T ss_pred EEEE
Confidence 9984
No 84
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=77.02 E-value=6 Score=42.04 Aligned_cols=69 Identities=13% Similarity=0.124 Sum_probs=49.8
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCC-CceeeecCc--ccHHHHHHHHHHcCCEEEEecCceeee
Q 006635 55 STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVCA 123 (637)
Q Consensus 55 ~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~-~G~ydF~g~--~dL~~fl~la~~~GL~vilr~GPyi~a 123 (637)
...+..++.++++|+.||.+=...+-..++... -+.|.|+-. -|..++++.++++|+++++..=|+|+.
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~ 92 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQ 92 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 377788999999999996664444433333322 235555532 289999999999999999998888764
No 85
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=76.51 E-value=20 Score=37.21 Aligned_cols=87 Identities=18% Similarity=0.387 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCCC--ceeeecCcccHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc
Q 006635 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPSP--GHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (637)
Q Consensus 58 ~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~--G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~ 135 (637)
-.|+++|.-+|++||+.|++- .-|.-+ -+-||+. .....+.+++.+.|+ |+ |-+| |.
T Consensus 18 ~sW~erl~~AK~~GFDFvEmS----vDEsDeRLaRLDWs~-~er~~l~~ai~etgv----~i-pSmC-----------lS 76 (287)
T COG3623 18 FSWLERLALAKELGFDFVEMS----VDESDERLARLDWSK-EERLALVNAIQETGV----RI-PSMC-----------LS 76 (287)
T ss_pred CCHHHHHHHHHHcCCCeEEEe----ccchHHHHHhcCCCH-HHHHHHHHHHHHhCC----Cc-cchh-----------hh
Confidence 359999999999999999994 455533 4667763 245567888999998 33 2233 22
Q ss_pred cCCCeeeecCChhhHHHHHHHHHHHHHHHH
Q 006635 136 YVPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (637)
Q Consensus 136 ~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~ 165 (637)
.+....+-+.|+.-++.....+.+-+..-.
T Consensus 77 aHRRfPfGS~D~~~r~~aleiM~KaI~LA~ 106 (287)
T COG3623 77 AHRRFPFGSKDEATRQQALEIMEKAIQLAQ 106 (287)
T ss_pred hhccCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 222234678899988888777777666555
No 86
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=76.38 E-value=53 Score=38.38 Aligned_cols=160 Identities=16% Similarity=0.175 Sum_probs=79.7
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEc-ccCCcCCCCCcee--------eecCc----ccHHHHHHHHHHcCCEEEEecCceee
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDTY-VFWNGHEPSPGHY--------NFEGS----YDLVRFIKTVQRVGLYAHLRIGPYVC 122 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~y-vfWn~hEp~~G~y--------dF~g~----~dL~~fl~la~~~GL~vilr~GPyi~ 122 (637)
.++.=++.|..|+...||.|+.| ..|.+|.|-|+.= |+.+| .-+...|+.|++.|+.++.=--=|.+
T Consensus 116 ~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa 195 (559)
T PF13199_consen 116 SAEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAA 195 (559)
T ss_dssp GHHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEE
T ss_pred CchhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhcc
Confidence 34677889999999999999999 8899999976533 23333 35789999999999998754322222
Q ss_pred eec--CCCCCCccccc-CCCe------ee----e-------cCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEccc
Q 006635 123 AEW--NFGGFPVWLKY-VPGI------SF----R-------TDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQI 182 (637)
Q Consensus 123 aEw--~~GG~P~WL~~-~p~i------~~----R-------t~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QI 182 (637)
-+. ..|=.|.|... +++- .+ . ..|+.++++...=+.+.++.+.=.+.+..+=|+.--+
T Consensus 196 ~~~~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~-- 273 (559)
T PF13199_consen 196 NNNYEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTV-- 273 (559)
T ss_dssp ETT--S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEE--
T ss_pred ccCcccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCcc--
Confidence 222 24556888642 2210 11 1 1245565555444444444443233333333433322
Q ss_pred cccccCCccccCcccHHHHHHHHHHHhcCCCCcceeeec
Q 006635 183 ENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMCK 221 (637)
Q Consensus 183 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~ 221 (637)
-+.-|.... .-...|...|.++-..+ -+.+++|+.
T Consensus 274 ~d~~G~~i~---~l~~~y~~Fi~~~K~~~-~~k~lv~N~ 308 (559)
T PF13199_consen 274 YDYDGNKIY---DLSDGYASFINAMKEAL-PDKYLVFNA 308 (559)
T ss_dssp GGTT---GG---ECHHHHHHHHHHHHHHS-TTSEEEEB-
T ss_pred ccCCCCCch---hhHHHHHHHHHHHHHhC-CCCceeeec
Confidence 122222110 12456777777666554 566777765
No 87
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=75.64 E-value=31 Score=36.57 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=48.3
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCC--------CCceeeecCc--ccHHHHHHHHHHcCCEEEEecCce
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP--------SPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPY 120 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp--------~~G~ydF~g~--~dL~~fl~la~~~GL~vilr~GPy 120 (637)
+.+.-++.++++++.||-+=.+++=...|.- .-+.|+|+.. -|..++++..++.|+++++.+=|+
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~ 97 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPA 97 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCC
Confidence 6777899999999999877666654333331 2346777643 399999999999999999887443
No 88
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=74.67 E-value=4 Score=42.46 Aligned_cols=52 Identities=19% Similarity=0.446 Sum_probs=39.2
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEecC
Q 006635 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (637)
Q Consensus 57 ~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~G 118 (637)
+...++.|+.+|+.||++|++ ..|..+.+ ..+..++|+.|+++|+.|+-..|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 566788999999999999998 45655554 34678999999999999999988
No 89
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=73.90 E-value=5.9 Score=45.84 Aligned_cols=54 Identities=22% Similarity=0.378 Sum_probs=39.0
Q ss_pred HHHHHHHHHCCCCEEEE-ccc-------CCcC-----CCCCceeeecCcccHHHHHHHHHHcCCEEEEec
Q 006635 61 EDLIRKAKDGGLDVIDT-YVF-------WNGH-----EPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 61 ~~~l~k~K~~G~N~I~~-yvf-------Wn~h-----Ep~~G~ydF~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
.+.|.-+|++|+|+|+. +|+ |... .|.+ .|.+..+|.+|++.|+++||.|||..
T Consensus 114 ~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 114 IEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45688899999999996 453 2211 1111 23445799999999999999999984
No 90
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=73.20 E-value=7.8 Score=45.53 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=42.2
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-ccc-------CCcCCCCCcee------eecCcccHHHHHHHHHHcCCEEEEe
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDT-YVF-------WNGHEPSPGHY------NFEGSYDLVRFIKTVQRVGLYAHLR 116 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~-yvf-------Wn~hEp~~G~y------dF~g~~dL~~fl~la~~~GL~vilr 116 (637)
..+.=.+.|.-+|++|+++|+. +|. |..- |.. .|....||.+||+.|+++||-|||.
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq----~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQ----GTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCC----cceeccccccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 5666678899999999999996 221 3221 111 1333469999999999999999998
No 91
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=72.23 E-value=55 Score=33.67 Aligned_cols=101 Identities=11% Similarity=0.103 Sum_probs=63.6
Q ss_pred EEeeCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCcee-eecCcccHHHHHHHHHHcCCEEEEecCceeeeecC
Q 006635 48 GSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHY-NFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWN 126 (637)
Q Consensus 48 G~~Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~y-dF~g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~ 126 (637)
|..+..+.+ -++.|+.+.+.|++.|+.. ..+|..-.- +++ ..++.++-++++++||.+.+- +||.
T Consensus 3 g~~~~~~~~---~~~~~~~~~~~G~~~vel~----~~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~----- 68 (273)
T smart00518 3 GAHVSAAGG---LYKAFIEAVDIGARSFQLF----LGNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL----- 68 (273)
T ss_pred eEEEcccCc---HhHHHHHHHHcCCCEEEEE----CCCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce-----
Confidence 333444444 3378999999999999993 344432110 122 236888999999999986542 3432
Q ss_pred CCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEcc
Q 006635 127 FGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQ 181 (637)
Q Consensus 127 ~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~Q 181 (637)
+.+.+.++..+++..+.+++.++..+ .+ |.++|.+.
T Consensus 69 -------------~nl~s~d~~~r~~~~~~l~~~i~~A~--~l----Ga~~vv~h 104 (273)
T smart00518 69 -------------INLASPDKEKVEKSIERLIDEIKRCE--EL----GIKALVFH 104 (273)
T ss_pred -------------ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12345577777777778888888777 33 55666553
No 92
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=71.57 E-value=8 Score=44.84 Aligned_cols=58 Identities=14% Similarity=0.186 Sum_probs=42.2
Q ss_pred HhHHHHHHHHHHHCCCCEEEE-cccCCcCCCC-Cceee----------ecCcccHHHHHHHHHHcCCEEEEec
Q 006635 57 PEMWEDLIRKAKDGGLDVIDT-YVFWNGHEPS-PGHYN----------FEGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 57 ~~~W~~~l~k~K~~G~N~I~~-yvfWn~hEp~-~G~yd----------F~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
-.-+.+.|.-+|++|+++|.. +|+-. |. ..-|| |....||.++++.|+++||+|||..
T Consensus 32 l~gi~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 32 LRGVTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHHHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 344668899999999999986 45421 21 11232 3344689999999999999999884
No 93
>PRK10785 maltodextrin glucosidase; Provisional
Probab=70.60 E-value=7.4 Score=45.54 Aligned_cols=58 Identities=19% Similarity=0.230 Sum_probs=40.8
Q ss_pred HHHHHHHHHHCCCCEEEE-cccCC--cCCCCCcee-----eecCcccHHHHHHHHHHcCCEEEEec
Q 006635 60 WEDLIRKAKDGGLDVIDT-YVFWN--GHEPSPGHY-----NFEGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 60 W~~~l~k~K~~G~N~I~~-yvfWn--~hEp~~G~y-----dF~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
-.+.|.-+|++|+|+|-. +||=+ .|---..-| .|.+..||.+|++.|++.||+|||..
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 356788899999999996 56632 121111111 13445799999999999999999873
No 94
>PRK09989 hypothetical protein; Provisional
Probab=70.09 E-value=43 Score=34.39 Aligned_cols=42 Identities=17% Similarity=0.360 Sum_probs=33.5
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEE
Q 006635 60 WEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (637)
Q Consensus 60 W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vil 115 (637)
.++.|++++++|++.|+...+|. .+...+.++++++||.|..
T Consensus 17 l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 17 FIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred HHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 67899999999999999843321 2467788889999999864
No 95
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=69.69 E-value=5.8 Score=32.60 Aligned_cols=39 Identities=26% Similarity=0.584 Sum_probs=28.1
Q ss_pred EEEEccCccEEEEEECCEEEEEEECCcccceeEEEeeEEeeccccEEEE
Q 006635 495 TLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIAL 543 (637)
Q Consensus 495 ~L~v~s~~h~~~VfVNG~~iGs~~g~~~~~~f~f~~~i~L~~G~N~Isl 543 (637)
.|+|.|.=.-+.|||||+++|... ..+. .|..|.++|.|
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp-------~~~~---~l~~G~~~v~v 41 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTP-------LTLK---DLPPGEHTVTV 41 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCc-------ceee---ecCCccEEEEE
Confidence 577788777899999999999432 2332 26678888774
No 96
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=69.66 E-value=44 Score=35.90 Aligned_cols=66 Identities=6% Similarity=0.081 Sum_probs=49.4
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCc--ccHHHHHHHHHHcCCEEEEecCceee
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVC 122 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~--~dL~~fl~la~~~GL~vilr~GPyi~ 122 (637)
..++.++.++++++.+|-+=.+.+-+.... ..+.|+|+.. -|..+|++..+++|++|++.+=|+|.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~ 89 (317)
T cd06600 22 PQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIR 89 (317)
T ss_pred CHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeecccc
Confidence 677789999999999987655554432222 3456777643 38999999999999999998877664
No 97
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=69.54 E-value=7.2 Score=45.09 Aligned_cols=60 Identities=13% Similarity=0.155 Sum_probs=43.2
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-cccCCcCCCCCceee----------ecCcccHHHHHHHHHHcCCEEEEec
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDT-YVFWNGHEPSPGHYN----------FEGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~-yvfWn~hEp~~G~yd----------F~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
+-.-+.+.|.-+|++|+|+|-. ++|-+-.. ..-|+ |....||.+|++.|+++||+|||..
T Consensus 25 ~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~--~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 25 DLRGIIEKLDYLKKLGVDYIWLNPFYVSPQK--DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred CHHHHHHhHHHHHHcCCCEEEECCcccCCCC--CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4455778899999999999986 45432111 11232 3345699999999999999999984
No 98
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=68.25 E-value=9.5 Score=44.70 Aligned_cols=55 Identities=20% Similarity=0.402 Sum_probs=37.2
Q ss_pred HHHHHHHHCCCCEEEE-ccc---------------CCcCC-----CCCceeeec---C---cccHHHHHHHHHHcCCEEE
Q 006635 62 DLIRKAKDGGLDVIDT-YVF---------------WNGHE-----PSPGHYNFE---G---SYDLVRFIKTVQRVGLYAH 114 (637)
Q Consensus 62 ~~l~k~K~~G~N~I~~-yvf---------------Wn~hE-----p~~G~ydF~---g---~~dL~~fl~la~~~GL~vi 114 (637)
+.|.-+|++|+|+|+. +|+ |...- |. +.|--+ | ..+|.+|++.|+++||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999996 454 22210 00 011000 1 2589999999999999999
Q ss_pred Eec
Q 006635 115 LRI 117 (637)
Q Consensus 115 lr~ 117 (637)
|..
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 984
No 99
>PRK09505 malS alpha-amylase; Reviewed
Probab=67.96 E-value=10 Score=45.18 Aligned_cols=58 Identities=14% Similarity=0.177 Sum_probs=42.2
Q ss_pred HHHHHHHHHHCCCCEEEE-cccCCcCCCC----Cc--------ee----------eecCcccHHHHHHHHHHcCCEEEEe
Q 006635 60 WEDLIRKAKDGGLDVIDT-YVFWNGHEPS----PG--------HY----------NFEGSYDLVRFIKTVQRVGLYAHLR 116 (637)
Q Consensus 60 W~~~l~k~K~~G~N~I~~-yvfWn~hEp~----~G--------~y----------dF~g~~dL~~fl~la~~~GL~vilr 116 (637)
+.+.|.-+|++|+|+|-+ .++=+.|... .| .| .|....||+++++.|+++||+|||.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 567788899999999985 5654443321 11 11 2334569999999999999999998
Q ss_pred c
Q 006635 117 I 117 (637)
Q Consensus 117 ~ 117 (637)
.
T Consensus 312 ~ 312 (683)
T PRK09505 312 V 312 (683)
T ss_pred E
Confidence 5
No 100
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=67.64 E-value=14 Score=40.25 Aligned_cols=72 Identities=22% Similarity=0.246 Sum_probs=56.8
Q ss_pred EEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCce-eeecCcccHHHHHHHHHHcCCEEEEecCceeeee
Q 006635 46 ISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGH-YNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAE 124 (637)
Q Consensus 46 ~sG~~Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~-ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aE 124 (637)
++=++.+.|.+.+.=...|++|...||.-|-| .+|.|.+.. --|. -+.++++.|++.||+||+.+-|-|.-|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 44566777888888888999999999998877 678887642 1122 578889999999999999998877555
No 101
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=67.44 E-value=2 Score=43.94 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=43.5
Q ss_pred HHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEe
Q 006635 61 EDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (637)
Q Consensus 61 ~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr 116 (637)
-...+.+.+.|.+.|.+.++|....+..-.+... ++.++.+.|+++||.||+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE
Confidence 4568899999999999999997766555444444 8999999999999999999
No 102
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=67.11 E-value=19 Score=38.44 Aligned_cols=68 Identities=18% Similarity=0.371 Sum_probs=52.1
Q ss_pred CCCCHhHHHHHHHHHHHCCC--CEEEEcccCCcCCCCCceeeecCc--ccHHHHHHHHHHcCCEEEEecCceeee
Q 006635 53 PRSTPEMWEDLIRKAKDGGL--DVIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVCA 123 (637)
Q Consensus 53 ~r~~~~~W~~~l~k~K~~G~--N~I~~yvfWn~hEp~~G~ydF~g~--~dL~~fl~la~~~GL~vilr~GPyi~a 123 (637)
...+.+.-.+.++++++.|+ ++|.+=..|. ..-|.|.|+-. -|..++++..++.|+++++.+=|+|+.
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~ 96 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINT 96 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCC
Confidence 44578889999999999996 4555544553 34566666532 389999999999999999999888864
No 103
>PRK12677 xylose isomerase; Provisional
Probab=66.17 E-value=1.1e+02 Score=34.08 Aligned_cols=89 Identities=10% Similarity=0.107 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeec---CcccHHHHHHHHHHcCCEEE-EecCceeeeecCCCCCCccc
Q 006635 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFE---GSYDLVRFIKTVQRVGLYAH-LRIGPYVCAEWNFGGFPVWL 134 (637)
Q Consensus 59 ~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~---g~~dL~~fl~la~~~GL~vi-lr~GPyi~aEw~~GG~P~WL 134 (637)
.+++.++++++.|+..|+.. .+..--|+.+ -...+.++.++++++||.|. +-+.-|.+..+..|
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g------ 99 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDG------ 99 (384)
T ss_pred CHHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCC------
Confidence 47789999999999999883 2111112222 11258899999999999976 54432211111111
Q ss_pred ccCCCeeeecCChhhHHHHHHHHHHHHHHHH
Q 006635 135 KYVPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (637)
Q Consensus 135 ~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~ 165 (637)
-+-+.|+..++...+.+.+.++.-+
T Consensus 100 ------~lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 100 ------AFTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred ------cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2445567766766666666666666
No 104
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=66.11 E-value=1e+02 Score=32.01 Aligned_cols=65 Identities=12% Similarity=0.227 Sum_probs=50.4
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCcee--eecCc--ccHHHHHHHHHHcCCEEEEecCcee
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHY--NFEGS--YDLVRFIKTVQRVGLYAHLRIGPYV 121 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~y--dF~g~--~dL~~fl~la~~~GL~vilr~GPyi 121 (637)
..++..+.++.+++.||-+=.+.+-+...+. .+.| +|+.. -|..++++..++.|++|++.+=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 6778899999999999986666655555443 3555 44422 3899999999999999999988877
No 105
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=65.82 E-value=21 Score=28.75 Aligned_cols=55 Identities=11% Similarity=0.117 Sum_probs=43.2
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEE
Q 006635 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (637)
Q Consensus 57 ~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vil 115 (637)
|..-.+.++.+.+.|+|...+|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 4556788999999999999999732 333 58877765 5778999999999988754
No 106
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=65.62 E-value=13 Score=38.69 Aligned_cols=52 Identities=12% Similarity=0.340 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEecCc
Q 006635 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (637)
Q Consensus 58 ~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~GP 119 (637)
...++.++.+|+.||++|++ ..|..+++ ..+..++|+.++++||.|+-..|.
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEeccccc
Confidence 56778888999999999988 56666665 347889999999999999988874
No 107
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=65.40 E-value=98 Score=34.57 Aligned_cols=89 Identities=19% Similarity=0.267 Sum_probs=58.5
Q ss_pred eCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCC----ceeeecCc---ccHHHHHHHHHHcCCEEEEecCceeee
Q 006635 51 HYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSP----GHYNFEGS---YDLVRFIKTVQRVGLYAHLRIGPYVCA 123 (637)
Q Consensus 51 Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~----G~ydF~g~---~dL~~fl~la~~~GL~vilr~GPyi~a 123 (637)
.|+..+.+.-.+.++++++.|++.+.+=--|....... |.+--+-. .-|..+++.+++.||..=|+..|.+++
T Consensus 51 ~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~ 130 (394)
T PF02065_consen 51 YYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVS 130 (394)
T ss_dssp HTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEE
T ss_pred cCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEecccccc
Confidence 35667888888999999999999877655586542222 33322211 249999999999999999998888765
Q ss_pred ecC--CCCCCcccccCCC
Q 006635 124 EWN--FGGFPVWLKYVPG 139 (637)
Q Consensus 124 Ew~--~GG~P~WL~~~p~ 139 (637)
+=. +-..|.|+...++
T Consensus 131 ~~S~l~~~hPdw~l~~~~ 148 (394)
T PF02065_consen 131 PDSDLYREHPDWVLRDPG 148 (394)
T ss_dssp SSSCHCCSSBGGBTCCTT
T ss_pred chhHHHHhCccceeecCC
Confidence 311 2247999977554
No 108
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=64.87 E-value=71 Score=28.69 Aligned_cols=70 Identities=20% Similarity=0.339 Sum_probs=45.3
Q ss_pred cceEEEEEEEEecCCcccccCCCccEEEEccCc--cEEEEEECC---EEEEEEEC----CcccceeE-EEeeEEeecccc
Q 006635 470 SDYLWYMTSVEISSSESFLRGGQKPTLTVESAG--HAVHVFING---QFLGSAFG----TRENRRFT-FSGPANLRAGIN 539 (637)
Q Consensus 470 sdYlWY~t~v~v~~~~~~~~~~~~~~L~v~s~~--h~~~VfVNG---~~iGs~~g----~~~~~~f~-f~~~i~L~~G~N 539 (637)
-+|+=|.. |+++.... -...+++.+.+ -.+.++||| +.+++..- ++. .++ .+.+|.|..|.|
T Consensus 31 G~~~~~~~-Vd~~~~g~-----y~~~~~~a~~~~~~~~~l~id~~~g~~~~~~~~~~tg~w~--~~~~~~~~v~l~~G~h 102 (125)
T PF03422_consen 31 GDWIEYNN-VDVPEAGT-----YTLTIRYANGGGGGTIELRIDGPDGTLIGTVSLPPTGGWD--TWQTVSVSVKLPAGKH 102 (125)
T ss_dssp TTEEEEEE-EEESSSEE-----EEEEEEEEESSSSEEEEEEETTTTSEEEEEEEEE-ESSTT--EEEEEEEEEEEESEEE
T ss_pred CCEEEEEE-EeeCCCce-----EEEEEEEECCCCCcEEEEEECCCCCcEEEEEEEcCCCCcc--ccEEEEEEEeeCCCee
Confidence 35555542 66655432 12456666653 389999999 88888752 332 233 667889999999
Q ss_pred EEEEEEec
Q 006635 540 KIALLSIA 547 (637)
Q Consensus 540 ~IslLs~t 547 (637)
+|.|....
T Consensus 103 ~i~l~~~~ 110 (125)
T PF03422_consen 103 TIYLVFNG 110 (125)
T ss_dssp EEEEEESS
T ss_pred EEEEEEEC
Confidence 99977654
No 109
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=63.91 E-value=30 Score=38.49 Aligned_cols=54 Identities=24% Similarity=0.304 Sum_probs=42.4
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEec
Q 006635 55 STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 55 ~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
.+.+.|+++|+.+|++||+....=+- ....+.- .-|...++.|++.|+++.|.+
T Consensus 14 yt~~dw~~di~~A~~~GIDgFaLNig------~~d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 14 YTQEDWEADIRLAQAAGIDGFALNIG------SSDSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecc------cCCcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 38899999999999999999887432 1222222 368888999999999999886
No 110
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=63.64 E-value=30 Score=41.29 Aligned_cols=55 Identities=16% Similarity=0.273 Sum_probs=36.9
Q ss_pred HHHHHHHCCCCEEEE-cccCCcCC---CCCc-----eee----------ec---CcccHHHHHHHHHHcCCEEEEec
Q 006635 63 LIRKAKDGGLDVIDT-YVFWNGHE---PSPG-----HYN----------FE---GSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 63 ~l~k~K~~G~N~I~~-yvfWn~hE---p~~G-----~yd----------F~---g~~dL~~fl~la~~~GL~vilr~ 117 (637)
.|.-+|++|+|+|+. +||=...+ ...| -|| |. ...+|.+|++.|+++||.|||..
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 377899999999996 56511111 1111 111 11 13589999999999999999984
No 111
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=63.55 E-value=42 Score=39.98 Aligned_cols=111 Identities=12% Similarity=0.058 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHCCCCEEE---------------EcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEecCceee
Q 006635 58 EMWEDLIRKAKDGGLDVID---------------TYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVC 122 (637)
Q Consensus 58 ~~W~~~l~k~K~~G~N~I~---------------~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~ 122 (637)
+.-...|+.+|+.|+|||- .|++| -|=| |+-|.= | .-...++.+.|+.|..+..||-.
T Consensus 334 ~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~lp--~r~d~f---~-~~aw~l~~r~~v~v~AWmp~~~~ 406 (671)
T PRK14582 334 RNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RLLP--MRADLF---N-RVAWQLRTRAGVNVYAWMPVLSF 406 (671)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-cccc--cccCCc---C-HHHHHHHHhhCCEEEEeccceee
Confidence 4577899999999999995 46667 3333 333311 1 22355689999999999999853
Q ss_pred e---------ecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEccccccc
Q 006635 123 A---------EWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEY 186 (637)
Q Consensus 123 a---------Ew~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEy 186 (637)
. +++..+-|.-++ |+-..| =.+|..++++|++.|.+-|+.+ .+|=++|.+.+-
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~r--l~P~~pe~r~~i~~i~~dla~~-------~~~dGilf~Dd~ 468 (671)
T PRK14582 407 DLDPTLPRVKRLDTGEGKAQIH--PEQYRR--LSPFDDRVRAQVGMLYEDLAGH-------AAFDGILFHDDA 468 (671)
T ss_pred ccCCCcchhhhccccCCccccC--CCCCcC--CCCCCHHHHHHHHHHHHHHHHh-------CCCceEEecccc
Confidence 2 122112221111 110112 1357789999999999998853 245556665553
No 112
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=63.54 E-value=30 Score=36.45 Aligned_cols=77 Identities=19% Similarity=0.323 Sum_probs=59.0
Q ss_pred cEEECCEEeEEEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeec--CcccHHHHHHHHHHcCCE
Q 006635 35 AILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFE--GSYDLVRFIKTVQRVGLY 112 (637)
Q Consensus 35 ~l~idG~~~~l~sG~~Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~--g~~dL~~fl~la~~~GL~ 112 (637)
.+.+.+.|++++.|=--- -.+++-.+.-+++|++|+..++.|.|=+-.. -+.|. |...|..+-+.|++.||.
T Consensus 20 ~~~~g~~~~~~iaGPCsi--e~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs----~~s~~G~g~~gl~~l~~~~~~~Gl~ 93 (266)
T PRK13398 20 DVVIGGEEKIIIAGPCAV--ESEEQMVKVAEKLKELGVHMLRGGAFKPRTS----PYSFQGLGEEGLKILKEVGDKYNLP 93 (266)
T ss_pred CEEEcCCCEEEEEeCCcC--CCHHHHHHHHHHHHHcCCCEEEEeeecCCCC----CCccCCcHHHHHHHHHHHHHHcCCC
Confidence 367777788888883211 1577788899999999999999998873333 34666 467899999999999999
Q ss_pred EEEec
Q 006635 113 AHLRI 117 (637)
Q Consensus 113 vilr~ 117 (637)
++-.|
T Consensus 94 ~~te~ 98 (266)
T PRK13398 94 VVTEV 98 (266)
T ss_pred EEEee
Confidence 88775
No 113
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=63.15 E-value=15 Score=42.35 Aligned_cols=58 Identities=17% Similarity=0.176 Sum_probs=42.4
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-cccCCcCCCC-Cceee----------ecCcccHHHHHHHHHHcCCEEEEe
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDT-YVFWNGHEPS-PGHYN----------FEGSYDLVRFIKTVQRVGLYAHLR 116 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~-yvfWn~hEp~-~G~yd----------F~g~~dL~~fl~la~~~GL~vilr 116 (637)
+-.-+.+.|.-+|++|+|+|-. +||=+ +. ..-|| |....|+.++++.|+++||+|||.
T Consensus 26 dl~gi~~~Ldyl~~LGv~~i~L~Pi~~~---~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD 95 (539)
T TIGR02456 26 DFPGLTSKLDYLKWLGVDALWLLPFFQS---PLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIID 95 (539)
T ss_pred CHHHHHHhHHHHHHCCCCEEEECCCcCC---CCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEE
Confidence 4556788899999999999986 45411 11 11222 334569999999999999999987
No 114
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=62.47 E-value=13 Score=40.49 Aligned_cols=114 Identities=20% Similarity=0.319 Sum_probs=68.7
Q ss_pred EEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCeeeecCChhhHHHH
Q 006635 74 VIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAM 153 (637)
Q Consensus 74 ~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~ 153 (637)
-|.+.|+|+++--+. -=...++.|+++|+.|+--+ .=||. +-+.|++. + +.. ++ +..
T Consensus 32 yvD~fvywsh~~~~i---------Pp~~~idaAHknGV~Vlgti----~~e~~--~~~~~~~~---l-L~~-~~---~~~ 88 (339)
T cd06547 32 YVDTFVYFSHSAVTI---------PPADWINAAHRNGVPVLGTF----IFEWT--GQVEWLED---F-LKK-DE---DGS 88 (339)
T ss_pred hhheeecccCccccC---------CCcHHHHHHHhcCCeEEEEE----EecCC--CchHHHHH---H-hcc-Cc---ccc
Confidence 477888898854331 01456899999999997432 33565 34556643 1 221 11 224
Q ss_pred HHHHHHHHHHHHhccccccCCCceEEccccccccCCccccCcccHHHHHHHHHHHhcC--CCCccee
Q 006635 154 QGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGL--DTGVPWV 218 (637)
Q Consensus 154 ~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~--g~~vP~~ 218 (637)
.++.++|+++.+.+++ +| +++-+|+..+.. ...+.-.++++.|++.+++. +..|-|+
T Consensus 89 ~~~a~kLv~lak~yGf---DG---w~iN~E~~~~~~--~~~~~l~~F~~~L~~~~~~~~~~~~v~WY 147 (339)
T cd06547 89 FPVADKLVEVAKYYGF---DG---WLINIETELGDA--EKAKRLIAFLRYLKAKLHENVPGSLVIWY 147 (339)
T ss_pred hHHHHHHHHHHHHhCC---Cc---eEeeeeccCCcH--HHHHHHHHHHHHHHHHHhhcCCCcEEEEE
Confidence 6788999999997765 33 788888887311 11123456666677776654 3445565
No 115
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=61.83 E-value=12 Score=47.46 Aligned_cols=56 Identities=25% Similarity=0.402 Sum_probs=39.4
Q ss_pred HHHHHHHHCCCCEEEE-cccCCcCCCC---Cce-----ee----------ec--CcccHHHHHHHHHHcCCEEEEec
Q 006635 62 DLIRKAKDGGLDVIDT-YVFWNGHEPS---PGH-----YN----------FE--GSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 62 ~~l~k~K~~G~N~I~~-yvfWn~hEp~---~G~-----yd----------F~--g~~dL~~fl~la~~~GL~vilr~ 117 (637)
+.|.-+|++|+|+|+. +|+=...|.. .|. || |. ...++.++++.|+++||.|||..
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 4577899999999996 5653322221 110 22 22 55789999999999999999984
No 116
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=60.30 E-value=20 Score=29.77 Aligned_cols=33 Identities=15% Similarity=0.428 Sum_probs=25.8
Q ss_pred cCccEEEEEECCEEEEEEECCc--ccceeEEEeeE
Q 006635 500 SAGHAVHVFINGQFLGSAFGTR--ENRRFTFSGPA 532 (637)
Q Consensus 500 s~~h~~~VfVNG~~iGs~~g~~--~~~~f~f~~~i 532 (637)
..+|.+-|||+++|+|..+... +..+|.|+..|
T Consensus 25 k~~dsaEV~~g~EfiGvi~~DedeGe~Sy~f~M~I 59 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFIGVIYRDEDEGEVSYNFQMAI 59 (63)
T ss_pred CCCCceEEEeCCEEEEEEEeecCCCcEEEEEEEEE
Confidence 4589999999999999999753 34567786554
No 117
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=60.28 E-value=14 Score=42.29 Aligned_cols=112 Identities=14% Similarity=0.115 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCcCCCC---CceeeecCcccHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc
Q 006635 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPS---PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (637)
Q Consensus 59 ~W~~~l~k~K~~G~N~I~~yvfWn~hEp~---~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~ 135 (637)
.+.++++.||++|++.-|.-|-|.-.=|. .+..+-.|..-...+|+...++||..++-. -.=.+|.+|-
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL--------fHwDlPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL--------FHWDLPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE--------ecCCCCHHHH
Confidence 47899999999999999999999998885 256788888888899999999999976654 1225788886
Q ss_pred c-CCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEc
Q 006635 136 Y-VPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILS 180 (637)
Q Consensus 136 ~-~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~ 180 (637)
+ .-+-.-+..=..|+++.+--++++.+++| ...--|-..|+.+
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK--~WiT~NEP~v~s~ 207 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVK--HWITFNEPNVFSI 207 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccce--eeEEecccceeee
Confidence 5 33322222235688888888888888888 4433344444433
No 118
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=59.99 E-value=15 Score=31.59 Aligned_cols=45 Identities=20% Similarity=0.334 Sum_probs=31.3
Q ss_pred CccEEEEccCccEEEEEECCEEEEEEECCcccceeEEEeeEEe-eccccEEEE
Q 006635 492 QKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANL-RAGINKIAL 543 (637)
Q Consensus 492 ~~~~L~v~s~~h~~~VfVNG~~iGs~~g~~~~~~f~f~~~i~L-~~G~N~Isl 543 (637)
+...|++......++-||||+++|+....+ ++.+ .+ .+|.++|++
T Consensus 32 ~~l~l~a~~~~~~~~W~vdg~~~g~~~~~~---~~~~----~~~~~G~h~l~v 77 (89)
T PF06832_consen 32 QPLVLKAAGGRGPVYWFVDGEPLGTTQPGH---QLFW----QPDRPGEHTLTV 77 (89)
T ss_pred ceEEEEEeCCCCcEEEEECCEEcccCCCCC---eEEe----CCCCCeeEEEEE
Confidence 345666666555999999999998766431 2222 35 779999987
No 119
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=59.95 E-value=20 Score=38.44 Aligned_cols=65 Identities=15% Similarity=0.233 Sum_probs=49.5
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCc--eeeecCcc--cHHHHHHHHHHcCCEEEEecCcee
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPG--HYNFEGSY--DLVRFIKTVQRVGLYAHLRIGPYV 121 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G--~ydF~g~~--dL~~fl~la~~~GL~vilr~GPyi 121 (637)
..++-.+.++++++.||-+=.+.+-|.... ..+ .|+|+-.+ |..++++..+++|++|++.+=|+|
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v 90 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTF 90 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCc
Confidence 677788999999999887755555554433 344 67766433 899999999999999999876666
No 120
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=59.91 E-value=37 Score=36.17 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=46.9
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEccc----CCcCCC----------------CCceeeecCcccHHHHHHHHHHcCCEEEE
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDTYVF----WNGHEP----------------SPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~yvf----Wn~hEp----------------~~G~ydF~g~~dL~~fl~la~~~GL~vil 115 (637)
+.+...+.|+.|-..++|+++.++- |.+--+ ..|.|.- .|+..+++.|++.|+.||-
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~---~di~elv~yA~~rgI~viP 90 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTY---AQLKDIIEYAAARGIEVIP 90 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECH---HHHHHHHHHHHHcCCEEEE
Confidence 7888999999999999999999877 754311 1233433 4999999999999999987
Q ss_pred ec
Q 006635 116 RI 117 (637)
Q Consensus 116 r~ 117 (637)
.+
T Consensus 91 Ei 92 (303)
T cd02742 91 EI 92 (303)
T ss_pred ec
Confidence 63
No 121
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=59.11 E-value=24 Score=42.93 Aligned_cols=64 Identities=19% Similarity=0.104 Sum_probs=45.5
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-cccCCc----CCCCCc-----eeeecCcccHHHHHHHHHHcCCEEEEecCc
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDT-YVFWNG----HEPSPG-----HYNFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~-yvfWn~----hEp~~G-----~ydF~g~~dL~~fl~la~~~GL~vilr~GP 119 (637)
+-+.+.+.|.-++++|+++|.. ++|=+. |--..- .-.|.+..+|.+|++.|+++||.|||.+=|
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 5677999999999999999976 443111 110000 112446789999999999999999998543
No 122
>PLN02361 alpha-amylase
Probab=58.59 E-value=22 Score=39.77 Aligned_cols=57 Identities=14% Similarity=0.153 Sum_probs=39.1
Q ss_pred HHHHHHHHHCCCCEEEEcccCCcCCC---CCc-eee----ecCcccHHHHHHHHHHcCCEEEEec
Q 006635 61 EDLIRKAKDGGLDVIDTYVFWNGHEP---SPG-HYN----FEGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 61 ~~~l~k~K~~G~N~I~~yvfWn~hEp---~~G-~yd----F~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
.+.|.-+|++|+++|-+.=+.....+ .+. -|+ |....+|+++++.|+++||+||+..
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 44566679999999987533322111 222 222 3344699999999999999999875
No 123
>PLN03059 beta-galactosidase; Provisional
Probab=58.01 E-value=13 Score=45.04 Aligned_cols=68 Identities=21% Similarity=0.358 Sum_probs=46.6
Q ss_pred eEEEEEEEEecCCcccccCCCc-cEEEEccCccEEEEEECCEEEEEEECC---------------c---------cccee
Q 006635 472 YLWYMTSVEISSSESFLRGGQK-PTLTVESAGHAVHVFINGQFLGSAFGT---------------R---------ENRRF 526 (637)
Q Consensus 472 YlWY~t~v~v~~~~~~~~~~~~-~~L~v~s~~h~~~VfVNG~~iGs~~g~---------------~---------~~~~f 526 (637)
-.||.++|+++.. .+ ..|.+.+.|- -.|||||+-+|.-.-. . ++++-
T Consensus 620 ~twYK~~Fd~p~g-------~Dpv~LDm~gmGK-G~aWVNG~nIGRYW~~~a~~~gC~~c~y~g~~~~~kc~~~cggP~q 691 (840)
T PLN03059 620 LTWYKTTFDAPGG-------NDPLALDMSSMGK-GQIWINGQSIGRHWPAYTAHGSCNGCNYAGTFDDKKCRTNCGEPSQ 691 (840)
T ss_pred ceEEEEEEeCCCC-------CCCEEEecccCCC-eeEEECCcccccccccccccCCCccccccccccchhhhccCCCcee
Confidence 5799999998654 23 5677887764 4689999999987611 0 13443
Q ss_pred E-EEeeE-EeeccccEEEEEEec
Q 006635 527 T-FSGPA-NLRAGINKIALLSIA 547 (637)
Q Consensus 527 ~-f~~~i-~L~~G~N~IslLs~t 547 (637)
+ +..|- -|++|.|.|.|+=+.
T Consensus 692 ~lYHVPr~~Lk~g~N~lViFEe~ 714 (840)
T PLN03059 692 RWYHVPRSWLKPSGNLLIVFEEW 714 (840)
T ss_pred EEEeCcHHHhccCCceEEEEEec
Confidence 4 43443 378899999887664
No 124
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=57.72 E-value=50 Score=31.74 Aligned_cols=104 Identities=18% Similarity=0.192 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHCCCCEEEEccc--CCcCCC----CCceeeecCcccHHHHHHHHHHcCCEEE-EecCceeeeecCCCCC
Q 006635 58 EMWEDLIRKAKDGGLDVIDTYVF--WNGHEP----SPGHYNFEGSYDLVRFIKTVQRVGLYAH-LRIGPYVCAEWNFGGF 130 (637)
Q Consensus 58 ~~W~~~l~k~K~~G~N~I~~yvf--Wn~hEp----~~G~ydF~g~~dL~~fl~la~~~GL~vi-lr~GPyi~aEw~~GG~ 130 (637)
..-++..+.+++.|+..+....+ |..... .+.+ .-.....+.+.+++|++.|...+ +.+|. .
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~----------~ 95 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGR----------Y 95 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTT----------E
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCcc----------c
Confidence 45667888899999997775544 433211 1111 11223478999999999998865 55542 0
Q ss_pred CcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEccccccccCC
Q 006635 131 PVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPE 189 (637)
Q Consensus 131 P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~ 189 (637)
+.+ + ......-++.+.+.+++++++.++++ +-+-+||..+..
T Consensus 96 ~~~----~----~~~~~~~~~~~~~~l~~l~~~a~~~g---------v~i~lE~~~~~~ 137 (213)
T PF01261_consen 96 PSG----P----EDDTEENWERLAENLRELAEIAEEYG---------VRIALENHPGPF 137 (213)
T ss_dssp SSS----T----TSSHHHHHHHHHHHHHHHHHHHHHHT---------SEEEEE-SSSSS
T ss_pred ccc----c----CCCHHHHHHHHHHHHHHHHhhhhhhc---------ceEEEecccCcc
Confidence 000 0 01223566777788899999988543 345689988764
No 125
>PRK09875 putative hydrolase; Provisional
Probab=57.36 E-value=72 Score=34.10 Aligned_cols=89 Identities=11% Similarity=0.065 Sum_probs=59.0
Q ss_pred eEEEccCcEEECCEEeEEEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHH
Q 006635 28 TVTYDRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQ 107 (637)
Q Consensus 28 ~v~~d~~~l~idG~~~~l~sG~~Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~ 107 (637)
.+++-|-.+.++..+ +.+......-..+.=.+.|+.+|+.|.+||- |..+ ..-.||...+.++++
T Consensus 7 G~tl~HEHl~~~~~~---~~~~~~~~l~~~~~~~~el~~~~~~Gg~tiV--------d~T~----~g~GRd~~~l~~is~ 71 (292)
T PRK09875 7 GYTLAHEHLHIDLSG---FKNNVDCRLDQYAFICQEMNDLMTRGVRNVI--------EMTN----RYMGRNAQFMLDVMR 71 (292)
T ss_pred CcceecCCeEecChh---hcCCcccccccHHHHHHHHHHHHHhCCCeEE--------ecCC----CccCcCHHHHHHHHH
Confidence 466667777776632 1111122122445555678889999999883 2222 112479999999999
Q ss_pred HcCCEEEEecCceeeeecCCCCCCccccc
Q 006635 108 RVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (637)
Q Consensus 108 ~~GL~vilr~GPyi~aEw~~GG~P~WL~~ 136 (637)
+-|+.+|...|-|.... +|.|+..
T Consensus 72 ~tgv~Iv~~TG~y~~~~-----~p~~~~~ 95 (292)
T PRK09875 72 ETGINVVACTGYYQDAF-----FPEHVAT 95 (292)
T ss_pred HhCCcEEEcCcCCCCcc-----CCHHHhc
Confidence 99999999999885433 6888764
No 126
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=56.42 E-value=26 Score=37.92 Aligned_cols=68 Identities=6% Similarity=0.024 Sum_probs=52.4
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCc--ccHHHHHHHHHHcCCEEEEecCceeeee
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVCAE 124 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~--~dL~~fl~la~~~GL~vilr~GPyi~aE 124 (637)
+.++-++.++++++.||.+=.+.+-+.. ....+.|+|+-. -|..+|++..++.|++|++..=|+|+.+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDIEH-TDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEChHH-hCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 6777889999999999876665544332 234566777643 2899999999999999999999999754
No 127
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=56.09 E-value=26 Score=38.07 Aligned_cols=68 Identities=9% Similarity=0.160 Sum_probs=52.8
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCc--ccH--HHHHHHHHHcCCEEEEecCceeeee
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS--YDL--VRFIKTVQRVGLYAHLRIGPYVCAE 124 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~--~dL--~~fl~la~~~GL~vilr~GPyi~aE 124 (637)
+.+..++.++++++.||.+=.+.+-+.+++. .+.|.|+.. -|. .++++..++.|++|++.+=|+|+-+
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~-~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~ 93 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQWNDIDYMDR-RRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISAN 93 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECcccccC-ccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccC
Confidence 5777899999999999877666554444432 466776653 277 9999999999999999998998753
No 128
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=55.14 E-value=92 Score=34.69 Aligned_cols=121 Identities=14% Similarity=0.147 Sum_probs=65.3
Q ss_pred CCCceeeecCcccHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCeeee----cC--ChhhHHHHHHHHHH
Q 006635 86 PSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFR----TD--NGPFKVAMQGFTQK 159 (637)
Q Consensus 86 p~~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~i~~R----t~--~~~y~~~~~~~~~~ 159 (637)
+..|.|||+....=+.|++.|++.|...++-.- --.|.|+... +...- .+ -+...++...|+..
T Consensus 93 ~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aFS---------NSPP~~MT~N-G~~~g~~~~~~NLk~d~y~~FA~YLa~ 162 (384)
T PF14587_consen 93 PADGSYDWDADAGQRWFLKAAKERGVNIFEAFS---------NSPPWWMTKN-GSASGGDDGSDNLKPDNYDAFADYLAD 162 (384)
T ss_dssp -TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SSS-GGGSSS-SSSB-S-SSS-SS-TT-HHHHHHHHHH
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEee---------cCCCHHHhcC-CCCCCCCccccccChhHHHHHHHHHHH
Confidence 567999999877788899999999999877541 2478888752 11111 11 13445666677777
Q ss_pred HHHHHHhccccccCCCceEEccccccccCCc-------cccC-cccHHHHHHHHHHHhcCCCCcceeeecC
Q 006635 160 IVQMMKNEKLFASQGGPIILSQIENEYGPES-------KSLG-AAGHAYVNWAAKMAVGLDTGVPWVMCKE 222 (637)
Q Consensus 160 i~~~l~~~~l~~~~gGpII~~QIENEyg~~~-------~~~~-~~~~~y~~~l~~~~~~~g~~vP~~~~~~ 222 (637)
++++++.+++ +|=-+--=||....- +.+. +...+.++.|.+..++.|+..-+..|+.
T Consensus 163 Vv~~~~~~GI------~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea 227 (384)
T PF14587_consen 163 VVKHYKKWGI------NFDYISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEA 227 (384)
T ss_dssp HHHHHHCTT--------EEEEE--S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEE
T ss_pred HHHHHHhcCC------ccceeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecch
Confidence 8888865443 444444458875321 1111 1346778888888888888876666554
No 129
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=55.06 E-value=29 Score=37.19 Aligned_cols=67 Identities=12% Similarity=0.169 Sum_probs=49.7
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCC-----CCceeeecCc--ccHHHHHHHHHHcCCEEEEecCceee
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-----SPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVC 122 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp-----~~G~ydF~g~--~dL~~fl~la~~~GL~vilr~GPyi~ 122 (637)
..++..+.++++++.||-+=.+.+-+.++.. .-|.|+|+-. -|..++++..+++|++|++.+=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 5677899999999999876555554333331 2346666533 38999999999999999999877775
No 130
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=54.76 E-value=29 Score=45.40 Aligned_cols=62 Identities=23% Similarity=0.275 Sum_probs=46.8
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCc---eee----------ecCcccHHHHHHHHHHcCCEEEEecCc
Q 006635 55 STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPG---HYN----------FEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (637)
Q Consensus 55 ~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G---~yd----------F~g~~dL~~fl~la~~~GL~vilr~GP 119 (637)
.+-+.|.+.|.-+|++|+|+|-.-=++ +..+| -|| |.+..|+.+|++.|+++||.|||.+=|
T Consensus 755 ~tf~~~~~~l~Yl~~LGv~~i~lsPi~---~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 755 FTFADAEAILPYLAALGISHVYASPIL---KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECCCc---CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 367889999999999999999863222 22222 122 446679999999999999999998544
No 131
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=53.88 E-value=33 Score=42.02 Aligned_cols=62 Identities=23% Similarity=0.290 Sum_probs=46.3
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEE-cccCCcCCCCCc---ee---e-------ecCcccHHHHHHHHHHcCCEEEEecCce
Q 006635 55 STPEMWEDLIRKAKDGGLDVIDT-YVFWNGHEPSPG---HY---N-------FEGSYDLVRFIKTVQRVGLYAHLRIGPY 120 (637)
Q Consensus 55 ~~~~~W~~~l~k~K~~G~N~I~~-yvfWn~hEp~~G---~y---d-------F~g~~dL~~fl~la~~~GL~vilr~GPy 120 (637)
.+-+.+.+.|.-++++|+|+|-. +++ +..+| -| | |.+..++.+|++.|+++||.|||.+=|-
T Consensus 17 ~tf~~~~~~l~YL~~LGis~IyLsPi~----~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~N 92 (879)
T PRK14511 17 FTFDDAAELVPYFADLGVSHLYLSPIL----AARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPN 92 (879)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECcCc----cCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 45677999999999999999986 343 11122 12 2 3456799999999999999999986443
No 132
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=53.73 E-value=23 Score=43.58 Aligned_cols=21 Identities=10% Similarity=0.412 Sum_probs=18.9
Q ss_pred ccHHHHHHHHHHcCCEEEEec
Q 006635 97 YDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 97 ~dL~~fl~la~~~GL~vilr~ 117 (637)
.+++++++.|+++||.|||..
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999984
No 133
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=53.16 E-value=25 Score=33.13 Aligned_cols=53 Identities=25% Similarity=0.414 Sum_probs=34.1
Q ss_pred ccHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhc
Q 006635 97 YDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNE 167 (637)
Q Consensus 97 ~dL~~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~ 167 (637)
.||..||+.|++.|+.|++=+-| +++.|. . .-|+ =++.-++++++|-.+++++
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wy--------d-ytG~--------~~~~r~~~y~kI~~~~~~~ 88 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKWY--------D-YTGL--------SKEMRQEYYKKIKYQLKSQ 88 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHHH--------H-HTT----------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHHH--------H-HhCC--------CHHHHHHHHHHHHHHHHHC
Confidence 39999999999999999776655 555552 1 1121 1255677899999999843
No 134
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=52.15 E-value=46 Score=36.36 Aligned_cols=76 Identities=21% Similarity=0.371 Sum_probs=58.1
Q ss_pred cEEECCEEeEEEEEEeeCCCC-CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecC--cccHHHHHHHHHHcCC
Q 006635 35 AILINGQRRILISGSIHYPRS-TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEG--SYDLVRFIKTVQRVGL 111 (637)
Q Consensus 35 ~l~idG~~~~l~sG~~Hy~r~-~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g--~~dL~~fl~la~~~GL 111 (637)
.+.|.|.+++++.| +=-+ .+++-.+.-+.+|++|.++++.|+|= |+---|.|.| ..-|.-+.+.|++.||
T Consensus 86 ~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L~~~~~~~Gl 158 (335)
T PRK08673 86 DVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLLAEAREETGL 158 (335)
T ss_pred CEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHHHHHHHHcCC
Confidence 36777788888888 2222 57777788888999999999999995 4444477776 4567777788999999
Q ss_pred EEEEec
Q 006635 112 YAHLRI 117 (637)
Q Consensus 112 ~vilr~ 117 (637)
.++-.+
T Consensus 159 ~v~tev 164 (335)
T PRK08673 159 PIVTEV 164 (335)
T ss_pred cEEEee
Confidence 988775
No 135
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=51.94 E-value=60 Score=35.31 Aligned_cols=116 Identities=22% Similarity=0.425 Sum_probs=73.9
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEE-EecCceeeeecCCCCCCcccc
Q 006635 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH-LRIGPYVCAEWNFGGFPVWLK 135 (637)
Q Consensus 57 ~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vi-lr~GPyi~aEw~~GG~P~WL~ 135 (637)
...|+.--.-.+.+||.+|.+|-+|+.-+.. .|+..||.-.+.+--+.| +.. .||-=+.
T Consensus 132 nPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~---------~d~e~~Lsdl~~APe~si~iLh---aCAhNPT-------- 191 (410)
T KOG1412|consen 132 NPTWENHHAIFEKAGFTTVATYPYWDAENKC---------VDLEGFLSDLESAPEGSIIILH---ACAHNPT-------- 191 (410)
T ss_pred CCchhHHHHHHHHcCCceeeeeeeecCCCce---------ecHHHHHHHHhhCCCCcEEeee---ccccCCC--------
Confidence 3459998899999999999999999976533 378888888877655532 322 2544221
Q ss_pred cCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCce--EEccccccccCCccccCcccHHHHHHHHHHHhcCCC
Q 006635 136 YVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPI--ILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGLDT 213 (637)
Q Consensus 136 ~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpI--I~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~ 213 (637)
|| || .+.=+..|++.|++..++ |. |+.| |. +.|+.++ =.|+.+.+++.|
T Consensus 192 ---Gm-----DP-----T~EQW~qia~vik~k~lf-----~fFDiAYQ-----Gf---ASGD~~~--DawAiR~fV~~g- 242 (410)
T KOG1412|consen 192 ---GM-----DP-----TREQWKQIADVIKSKNLF-----PFFDIAYQ-----GF---ASGDLDA--DAWAIRYFVEQG- 242 (410)
T ss_pred ---CC-----CC-----CHHHHHHHHHHHHhcCce-----eeeehhhc-----cc---ccCCccc--cHHHHHHHHhcC-
Confidence 22 11 123346678888877664 22 3333 21 2343333 468888888887
Q ss_pred CcceeeecC
Q 006635 214 GVPWVMCKE 222 (637)
Q Consensus 214 ~vP~~~~~~ 222 (637)
.+++.|+.
T Consensus 243 -~e~fv~QS 250 (410)
T KOG1412|consen 243 -FELFVCQS 250 (410)
T ss_pred -CeEEEEhh
Confidence 56788874
No 136
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=51.92 E-value=27 Score=36.50 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=36.4
Q ss_pred HHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEecC
Q 006635 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (637)
Q Consensus 64 l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~G 118 (637)
.+++|++|++.|-+ .|..++-.|.=+ +..+.+=++.|.++||.+|+++|
T Consensus 79 ~~mLkd~G~~~vii-----GHSERR~~f~Et-d~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 79 AEMLKDLGVKYVII-----GHSERRQYFGET-DELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred HHHHHHCCCCEEEe-----CcccccCccCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 45789999999999 787777666522 23344444459999999999987
No 137
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=51.69 E-value=40 Score=36.13 Aligned_cols=66 Identities=14% Similarity=0.123 Sum_probs=47.6
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCcCCC---CCceeeecCc--ccHHHHHHHHHHcCCEEEEecCceee
Q 006635 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEP---SPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVC 122 (637)
Q Consensus 57 ~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp---~~G~ydF~g~--~dL~~fl~la~~~GL~vilr~GPyi~ 122 (637)
.+.-.+.++++++.||-+=.+.+-+....- ....|+|.-. -|..++++..+++|++|++.+=|+|+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 567789999999999876655543322221 1234666432 38999999999999999999877774
No 138
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=51.67 E-value=82 Score=33.62 Aligned_cols=66 Identities=15% Similarity=0.120 Sum_probs=47.0
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEccc----CCcCC-CC--CceeeecCcccHHHHHHHHHHcCCEEEEecCceeeee
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDTYVF----WNGHE-PS--PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAE 124 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~yvf----Wn~hE-p~--~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aE 124 (637)
+.+.-.+.|+.|...|+|+++.|+- +..+. .. +|.|.- .|++++++.|++.|+.||-.+--.-+.|
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~---~ei~ei~~yA~~~gI~vIPeid~pGH~~ 87 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTK---EEIREIDDYAAELGIEVIPLIQTLGHLE 87 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCH---HHHHHHHHHHHHcCCEEEecCCCHHHHH
Confidence 5677899999999999999998752 33221 11 344433 4999999999999999997753333444
No 139
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=51.64 E-value=64 Score=33.21 Aligned_cols=75 Identities=9% Similarity=0.080 Sum_probs=47.7
Q ss_pred Cceeeec-CcccHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHh
Q 006635 88 PGHYNFE-GSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKN 166 (637)
Q Consensus 88 ~G~ydF~-g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~ 166 (637)
.|...+. ...++..+++.|++.|++|++.+|= |..+. ... + ..++. .-++|.+.|++.+++
T Consensus 36 ~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sigg-----~~~~~---~~~----~---~~~~~---~r~~fi~~lv~~~~~ 97 (253)
T cd06545 36 NGTLNANPVRSELNSVVNAAHAHNVKILISLAG-----GSPPE---FTA----A---LNDPA---KRKALVDKIINYVVS 97 (253)
T ss_pred CCeEEecCcHHHHHHHHHHHHhCCCEEEEEEcC-----CCCCc---chh----h---hcCHH---HHHHHHHHHHHHHHH
Confidence 4666664 3357889999999999999999861 21111 110 0 12332 345789999999997
Q ss_pred ccccccCCCceEEccccccccC
Q 006635 167 EKLFASQGGPIILSQIENEYGP 188 (637)
Q Consensus 167 ~~l~~~~gGpII~~QIENEyg~ 188 (637)
+++ + ++.|+=|+..
T Consensus 98 ~~~---D-----GIdiDwE~~~ 111 (253)
T cd06545 98 YNL---D-----GIDVDLEGPD 111 (253)
T ss_pred hCC---C-----ceeEEeeccC
Confidence 765 2 4556667653
No 140
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=51.20 E-value=54 Score=34.76 Aligned_cols=109 Identities=15% Similarity=0.224 Sum_probs=68.1
Q ss_pred EEEEEEeeCCCC---CHhHH-HHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEecCc
Q 006635 44 ILISGSIHYPRS---TPEMW-EDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (637)
Q Consensus 44 ~l~sG~~Hy~r~---~~~~W-~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~GP 119 (637)
+-+++..|+... +.... -+.|++-.++|.+.+-|=.+ ||.+ .+.+|++.|++.|+.+=+-||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~----------Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLF----------YDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccce----------ecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 567777777553 22222 13344333699999998333 4444 6889999999997765444554
Q ss_pred eee---------eecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHh
Q 006635 120 YVC---------AEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKN 166 (637)
Q Consensus 120 yi~---------aEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~ 166 (637)
.-+ .||..--+|.|+.+.=. ....+++..++.--++..++++.+++
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~-~~~~~~~~~~~~gi~~a~~~~~~l~~ 251 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLE-PIKDDDEAVRDYGIELIVEMCQKLLA 251 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 433 57777778999875210 12233455566777788888887774
No 141
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=50.41 E-value=26 Score=30.27 Aligned_cols=47 Identities=19% Similarity=0.252 Sum_probs=24.9
Q ss_pred CCceEEcccccc-ccCCcccc----Cc-ccHHHHHHHHHHH---hcCCCCcceeee
Q 006635 174 GGPIILSQIENE-YGPESKSL----GA-AGHAYVNWAAKMA---VGLDTGVPWVMC 220 (637)
Q Consensus 174 gGpII~~QIENE-yg~~~~~~----~~-~~~~y~~~l~~~~---~~~g~~vP~~~~ 220 (637)
...|.+|+|-|| -++....+ +. ....|.+|+++++ |+.+-..|+..+
T Consensus 8 ~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g 63 (88)
T PF12876_consen 8 DPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSG 63 (88)
T ss_dssp GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE--
T ss_pred CCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEee
Confidence 347999999999 55221111 11 2355666666555 567888887653
No 142
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=50.35 E-value=33 Score=33.93 Aligned_cols=89 Identities=16% Similarity=0.323 Sum_probs=56.2
Q ss_pred EEEEeeCCCC-----CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeee--cC-cccHHHHHHHHHHcCCEEEEec
Q 006635 46 ISGSIHYPRS-----TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNF--EG-SYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 46 ~sG~~Hy~r~-----~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF--~g-~~dL~~fl~la~~~GL~vilr~ 117 (637)
.-|.+||++. +.++.+..++.++..+++. ...|--.|..++.+.- +- ...+.+|++.++++|.++++-.
T Consensus 54 ~~G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~---~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt 130 (196)
T cd06416 54 STDVYFFPCINCCGSAAGQVQTFLQYLKANGIKY---GTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYS 130 (196)
T ss_pred ccceEEEecCCCCCCHHHHHHHHHHHHHhCCCce---eEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEc
Confidence 3499999754 4667888888888865532 1123344543343321 11 1467899999999999999988
Q ss_pred Cceee----eec---CCCCCCcccccC
Q 006635 118 GPYVC----AEW---NFGGFPVWLKYV 137 (637)
Q Consensus 118 GPyi~----aEw---~~GG~P~WL~~~ 137 (637)
+++-- +.. +....|.|+...
T Consensus 131 ~~~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 131 SQYDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred CcchhccccCCCcCCCcCCCceEecCC
Confidence 87522 111 145689998763
No 143
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=48.82 E-value=33 Score=35.67 Aligned_cols=49 Identities=22% Similarity=0.317 Sum_probs=40.0
Q ss_pred HHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEecC
Q 006635 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (637)
Q Consensus 64 l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~G 118 (637)
.+++|++|++.|-+ .|..++--|.-+ +.++.+=++.|.++||.+|+++|
T Consensus 77 ~~mL~d~G~~~vii-----GHSERR~~f~Et-~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 77 AEMLKDAGAKYVII-----GHSERRQYFGET-DEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred HHHHHHcCCCEEEe-----CcccccCcCCCC-cHHHHHHHHHHHHCCCEEEEEeC
Confidence 45789999999998 677666555433 56888889999999999999987
No 144
>PRK03705 glycogen debranching enzyme; Provisional
Probab=48.59 E-value=30 Score=41.10 Aligned_cols=55 Identities=22% Similarity=0.375 Sum_probs=36.9
Q ss_pred HHHHHHHCCCCEEEE-cccCCcCCCCC---c-----eee----------ecCc-----ccHHHHHHHHHHcCCEEEEec
Q 006635 63 LIRKAKDGGLDVIDT-YVFWNGHEPSP---G-----HYN----------FEGS-----YDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 63 ~l~k~K~~G~N~I~~-yvfWn~hEp~~---G-----~yd----------F~g~-----~dL~~fl~la~~~GL~vilr~ 117 (637)
.|.-+|++|+|+|+. +|+=...++.. | -|| |... .+|.++++.|+++||.|||..
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 488999999999996 45422112110 1 011 2211 479999999999999999983
No 145
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=48.27 E-value=92 Score=35.14 Aligned_cols=109 Identities=17% Similarity=0.294 Sum_probs=65.9
Q ss_pred eCCCC--CHhHHHHHHHHHHHCCCCEEEE-cccCCcCC--C--CCceeeec-----Cc-----ccHHHHHHHHH-HcCCE
Q 006635 51 HYPRS--TPEMWEDLIRKAKDGGLDVIDT-YVFWNGHE--P--SPGHYNFE-----GS-----YDLVRFIKTVQ-RVGLY 112 (637)
Q Consensus 51 Hy~r~--~~~~W~~~l~k~K~~G~N~I~~-yvfWn~hE--p--~~G~ydF~-----g~-----~dL~~fl~la~-~~GL~ 112 (637)
+.++. +-+.|++.|+.+++.|+|+|.. ++---... | ..++..|+ .. .+|.++++.++ ++||.
T Consensus 13 vlsk~~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll 92 (423)
T PF14701_consen 13 VLSKWMGPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLL 92 (423)
T ss_pred EhhhhcCCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCce
Confidence 34444 6679999999999999999984 22211111 1 11222222 11 48999999985 79999
Q ss_pred EEEecCceeeeecCCCCC-CcccccCCCeeeecCChhhHHHHH---HHHHHHHHHHH
Q 006635 113 AHLRIGPYVCAEWNFGGF-PVWLKYVPGISFRTDNGPFKVAMQ---GFTQKIVQMMK 165 (637)
Q Consensus 113 vilr~GPyi~aEw~~GG~-P~WL~~~p~i~~Rt~~~~y~~~~~---~~~~~i~~~l~ 165 (637)
++..+= ||.-.. =.||..+|+.-.-..+.|+++..- +-+-++...|.
T Consensus 93 ~~~DvV------~NHtA~nS~Wl~eHPEagYN~~nsPHL~pA~eLD~aL~~fS~~l~ 143 (423)
T PF14701_consen 93 SMTDVV------LNHTANNSPWLREHPEAGYNLENSPHLRPAYELDRALLEFSKDLE 143 (423)
T ss_pred EEEEEe------eccCcCCChHHHhCcccccCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 886641 444333 469999998655555556655433 33444444444
No 146
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=47.93 E-value=46 Score=35.84 Aligned_cols=59 Identities=25% Similarity=0.321 Sum_probs=40.3
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccC---CcCCCCCcee--------eecCcccHHHHHHHHHHcCCEEEEec
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDTYVFW---NGHEPSPGHY--------NFEGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~yvfW---n~hEp~~G~y--------dF~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
.+..-.++++.+|..|+|++-.=+== ++.=|....+ .| .|+.-||+.|+|.|||+|.|+
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f---~Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKF---KDIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhccccc---cccHHHHHHHHhcCeEEEEEE
Confidence 45567789999999999998642210 0111111111 13 389999999999999999995
No 147
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=47.92 E-value=45 Score=36.04 Aligned_cols=67 Identities=13% Similarity=0.155 Sum_probs=49.9
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCc--ccHHHHHHHHHHcCCEEEEecCceeee
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVCA 123 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~--~dL~~fl~la~~~GL~vilr~GPyi~a 123 (637)
+.+..++.++++++.||-+=.+.+-+.+.. .-+.|+|+-. -|..++++..+++|+++++..=|+|+.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~ 90 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKV 90 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeC
Confidence 667789999999999987644444433332 3445666543 378999999999999999998888864
No 148
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=47.84 E-value=1.2e+02 Score=32.90 Aligned_cols=72 Identities=13% Similarity=0.164 Sum_probs=55.2
Q ss_pred eeCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCc--ccHHHHHHHHHHcCCEEEEecCceee
Q 006635 50 IHYPRS---TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVC 122 (637)
Q Consensus 50 ~Hy~r~---~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~--~dL~~fl~la~~~GL~vilr~GPyi~ 122 (637)
+|..|. +.++.++.++++++.+|-+=.+++-|..++ .-+.|.|+.. -|..++++..++.|+++++.+=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 444443 778889999999999987666665555543 3466776643 38899999999999999998888887
No 149
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=47.53 E-value=97 Score=33.85 Aligned_cols=73 Identities=15% Similarity=0.247 Sum_probs=52.8
Q ss_pred ccCcEEECCEEeEEEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEEccc----CCcCC----------------------
Q 006635 32 DRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVF----WNGHE---------------------- 85 (637)
Q Consensus 32 d~~~l~idG~~~~l~sG~~Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvf----Wn~hE---------------------- 85 (637)
..|.|+||=-| || .+.+...+.|+.|-..++|+.+.++- |.+--
T Consensus 2 ~~RG~mLD~aR--------~f--~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~ 71 (357)
T cd06563 2 SWRGLMLDVSR--------HF--FPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQ 71 (357)
T ss_pred Cccceeeeccc--------cC--cCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccc
Confidence 34666776544 33 36899999999999999999998763 42211
Q ss_pred ------CCCceeeecCcccHHHHHHHHHHcCCEEEEec
Q 006635 86 ------PSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 86 ------p~~G~ydF~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
+..|.|. ..|++.+++.|++.|+.||-.+
T Consensus 72 ~~~~~~~~~~~YT---~~di~eiv~yA~~rgI~VIPEI 106 (357)
T cd06563 72 GGGDGTPYGGFYT---QEEIREIVAYAAERGITVIPEI 106 (357)
T ss_pred cccCCCccCceEC---HHHHHHHHHHHHHcCCEEEEec
Confidence 1123343 3499999999999999999764
No 150
>PLN00196 alpha-amylase; Provisional
Probab=47.41 E-value=44 Score=37.69 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=39.7
Q ss_pred HHHHHHHHHCCCCEEEEc-ccCCc--CCCCCc-eeee-----cCcccHHHHHHHHHHcCCEEEEec
Q 006635 61 EDLIRKAKDGGLDVIDTY-VFWNG--HEPSPG-HYNF-----EGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 61 ~~~l~k~K~~G~N~I~~y-vfWn~--hEp~~G-~ydF-----~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
.+.|.-+|++|+++|-.. ++=+. |--.+. -|+. ....+|.++++.|+++||+||+..
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 466778899999999875 44221 211222 1333 233699999999999999999985
No 151
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=46.95 E-value=34 Score=43.10 Aligned_cols=21 Identities=14% Similarity=0.365 Sum_probs=19.4
Q ss_pred ccHHHHHHHHHHcCCEEEEec
Q 006635 97 YDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 97 ~dL~~fl~la~~~GL~vilr~ 117 (637)
.+|.++++.|+++||.|||..
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 579999999999999999984
No 152
>PLN02877 alpha-amylase/limit dextrinase
Probab=46.32 E-value=36 Score=42.16 Aligned_cols=20 Identities=20% Similarity=0.604 Sum_probs=18.5
Q ss_pred cHHHHHHHHHHcCCEEEEec
Q 006635 98 DLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 98 dL~~fl~la~~~GL~vilr~ 117 (637)
+++++++.|+++||.|||..
T Consensus 467 efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 467 EFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHCCCEEEEEE
Confidence 69999999999999999984
No 153
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=46.30 E-value=73 Score=34.28 Aligned_cols=72 Identities=13% Similarity=0.182 Sum_probs=50.8
Q ss_pred cCcEEECCEEeEEEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEEccc--CCcC---CC---------------------
Q 006635 33 RKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVF--WNGH---EP--------------------- 86 (637)
Q Consensus 33 ~~~l~idG~~~~l~sG~~Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvf--Wn~h---Ep--------------------- 86 (637)
.|.|+||=.| || .+.+...+.|+.|-..++|+++.++- |.+- .|
T Consensus 2 ~RG~mLD~aR--------~~--~~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~ 71 (326)
T cd06564 2 VRGFMLDVGR--------KY--YSMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYN 71 (326)
T ss_pred cceeEEEccC--------CC--CCHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCC
Confidence 3556666444 34 37899999999999999999997544 3221 11
Q ss_pred ---CCceeeecCcccHHHHHHHHHHcCCEEEEec
Q 006635 87 ---SPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 87 ---~~G~ydF~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
..|.|. ..|+..+++.|++.|+.||-.+
T Consensus 72 ~~~~~~~YT---~~di~eiv~yA~~rgI~vIPEI 102 (326)
T cd06564 72 LTANDGYYT---KEEFKELIAYAKDRGVNIIPEI 102 (326)
T ss_pred CCCCCCccc---HHHHHHHHHHHHHcCCeEeccC
Confidence 122232 3499999999999999998664
No 154
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=45.77 E-value=54 Score=35.52 Aligned_cols=76 Identities=13% Similarity=0.124 Sum_probs=54.0
Q ss_pred ccCcEEECCEEeEEEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEEccc----CCcCCC------CCceee--------e
Q 006635 32 DRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVF----WNGHEP------SPGHYN--------F 93 (637)
Q Consensus 32 d~~~l~idG~~~~l~sG~~Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvf----Wn~hEp------~~G~yd--------F 93 (637)
..|.|+||--| || .+.+...+.|+.|-..++|+.+.++- |.+.-+ ..|.+. |
T Consensus 2 ~~RG~mlD~aR--------~f--~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~ 71 (329)
T cd06568 2 AYRGLMLDVAR--------HF--FTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGY 71 (329)
T ss_pred CccceeeeccC--------CC--cCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCc
Confidence 34677777555 32 38899999999999999999998874 644321 122221 0
Q ss_pred cCcccHHHHHHHHHHcCCEEEEec
Q 006635 94 EGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 94 ~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
=-..|+..+++.|++.|+.||-.+
T Consensus 72 YT~~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 72 YTQEDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEec
Confidence 013599999999999999999764
No 155
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=45.30 E-value=86 Score=32.92 Aligned_cols=110 Identities=16% Similarity=0.186 Sum_probs=67.2
Q ss_pred eEEEEEEeeCCCC----CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEE--EEe
Q 006635 43 RILISGSIHYPRS----TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA--HLR 116 (637)
Q Consensus 43 ~~l~sG~~Hy~r~----~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~v--ilr 116 (637)
.+-+++..|+.+. +.+.=.++|++=.++|.+.+-|=. .||.+ .+.+|++.|++.|+.+ ++-
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~----------~fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQL----------FFDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeecc----------ccCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 4778888876543 222223456666788999888832 34544 7889999999997664 444
Q ss_pred cCceee-------eecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHh
Q 006635 117 IGPYVC-------AEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKN 166 (637)
Q Consensus 117 ~GPyi~-------aEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~ 166 (637)
+-|-.. .+|..-.+|.|+.+.=. ....+....+++--++..++++.+++
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~-~~~~~~~~~~~~gi~~~~~~~~~l~~ 247 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKRLE-KYDDDPEEVRAVGIEYATDQCEDLIA 247 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444332 23566678888865110 01112234566666777777777763
No 156
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=44.94 E-value=59 Score=36.22 Aligned_cols=71 Identities=13% Similarity=0.269 Sum_probs=49.1
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCc--ccHHHHHHHHHHcCCEEEEecCceeeeecC
Q 006635 55 STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVCAEWN 126 (637)
Q Consensus 55 ~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~--~dL~~fl~la~~~GL~vilr~GPyi~aEw~ 126 (637)
...+...+.++.+++.|+-+=...+-..... ..+.|.|+.. -|..++++.+++.|+++++..-|+|+-+-.
T Consensus 40 ~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~ 112 (441)
T PF01055_consen 40 YNQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSP 112 (441)
T ss_dssp TSHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTT
T ss_pred CCHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCC
Confidence 3577788999999999987766655433332 4445555532 289999999999999999999999876643
No 157
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=44.38 E-value=70 Score=25.75 Aligned_cols=43 Identities=30% Similarity=0.487 Sum_probs=32.8
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEE
Q 006635 60 WEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (637)
Q Consensus 60 W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vil 115 (637)
.++.++++|+.|++.|-+- -|. ++. ...+|.+++++.||.+|.
T Consensus 17 ~~~~~~~a~~~g~~~v~iT----Dh~------~~~---~~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 17 PEELVKRAKELGLKAIAIT----DHG------NLF---GAVEFYKAAKKAGIKPII 59 (67)
T ss_pred HHHHHHHHHHcCCCEEEEe----eCC------ccc---CHHHHHHHHHHcCCeEEE
Confidence 5688999999999999872 222 233 467889999999998764
No 158
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=43.50 E-value=60 Score=35.32 Aligned_cols=73 Identities=12% Similarity=0.155 Sum_probs=50.7
Q ss_pred eeCCCC---CHhHHHHHHHHHHHCCCCEEEEcc----------cCCcCCCC---------CceeeecC--c-ccHHHHHH
Q 006635 50 IHYPRS---TPEMWEDLIRKAKDGGLDVIDTYV----------FWNGHEPS---------PGHYNFEG--S-YDLVRFIK 104 (637)
Q Consensus 50 ~Hy~r~---~~~~W~~~l~k~K~~G~N~I~~yv----------fWn~hEp~---------~G~ydF~g--~-~dL~~fl~ 104 (637)
+|..|. ..+.-++.++++++.||-+=.+++ .|+-..-. -+.++|.. + -|..++|+
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 455553 567788999999999987665544 24432211 13344432 1 28999999
Q ss_pred HHHHcCCEEEEecCceee
Q 006635 105 TVQRVGLYAHLRIGPYVC 122 (637)
Q Consensus 105 la~~~GL~vilr~GPyi~ 122 (637)
..++.|++|+|.+=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999999888875
No 159
>PLN02540 methylenetetrahydrofolate reductase
Probab=43.29 E-value=50 Score=38.61 Aligned_cols=90 Identities=13% Similarity=0.221 Sum_probs=60.7
Q ss_pred HHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcC--CEEEEecCceee-------eecCCCCCCcc
Q 006635 63 LIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVG--LYAHLRIGPYVC-------AEWNFGGFPVW 133 (637)
Q Consensus 63 ~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~G--L~vilr~GPyi~-------aEw~~GG~P~W 133 (637)
.|++-.++|.+.|.|=. .||.+ .+.+|++.|+++| +.+|..+-|-.. +++..--+|.|
T Consensus 161 ~Lk~KvdAGAdFiITQl----------fFD~d---~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~~~l~Gi~IP~~ 227 (565)
T PLN02540 161 YLKEKVDAGADLIITQL----------FYDTD---IFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAE 227 (565)
T ss_pred HHHHHHHcCCCEEeecc----------ccCHH---HHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHHHhccCCcCCHH
Confidence 33344467999999933 35655 6889999999998 566777666553 44665567888
Q ss_pred cccCCCeeeecCChhhHHHHHHHHHHHHHHHHh
Q 006635 134 LKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKN 166 (637)
Q Consensus 134 L~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~ 166 (637)
+.+.=+ ....+++..++.-.++..++++.|.+
T Consensus 228 i~~rLe-~~kddde~v~~~Gieia~e~~~~L~~ 259 (565)
T PLN02540 228 ITAALE-PIKDNDEAVKAYGIHLGTEMCKKILA 259 (565)
T ss_pred HHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 865211 13345566677777788888888874
No 160
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=42.93 E-value=36 Score=35.05 Aligned_cols=55 Identities=13% Similarity=0.012 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCcCCCCC----ceeeecCcccHHHHHHHHHHcCCEEEEec
Q 006635 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSP----GHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 59 ~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~----G~ydF~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
.+++.++.++++|..+|.+ |..+.... -.+... ...|.++.++|+++|+.+.+.+
T Consensus 91 ~~~~~i~~a~~lGa~~i~~---~~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 91 MIKLAMDMAKEMNAGYTLI---SAAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHhCCCEEEE---cCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEec
Confidence 5667789999999999966 22232211 112211 1368999999999999999987
No 161
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=42.90 E-value=1.4e+02 Score=32.61 Aligned_cols=75 Identities=15% Similarity=0.252 Sum_probs=53.2
Q ss_pred ccCcEEECCEEeEEEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEEccc----CCcCCC------CCceeeec---Cccc
Q 006635 32 DRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVF----WNGHEP------SPGHYNFE---GSYD 98 (637)
Q Consensus 32 d~~~l~idG~~~~l~sG~~Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvf----Wn~hEp------~~G~ydF~---g~~d 98 (637)
..|.|++|--| |+ .+.+...+.|+.|-...+|+.+.++- |.+--+ +.|.|.=. -..|
T Consensus 2 ~~RG~mlDvaR--------~f--~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~d 71 (348)
T cd06562 2 PHRGLLLDTSR--------HF--LSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPED 71 (348)
T ss_pred Cccceeeeccc--------cC--CCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHH
Confidence 34667777554 33 36889999999999999999998763 544322 12322211 1249
Q ss_pred HHHHHHHHHHcCCEEEEe
Q 006635 99 LVRFIKTVQRVGLYAHLR 116 (637)
Q Consensus 99 L~~fl~la~~~GL~vilr 116 (637)
+..+++.|++.|+.||..
T Consensus 72 i~eiv~yA~~rgI~vIPE 89 (348)
T cd06562 72 VKEIVEYARLRGIRVIPE 89 (348)
T ss_pred HHHHHHHHHHcCCEEEEe
Confidence 999999999999999976
No 162
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=42.28 E-value=50 Score=33.51 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=36.3
Q ss_pred HHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEec
Q 006635 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 64 l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
..++|++|++.+-+ .|..++ |.-+ |+.+=++.|.++||.+||++
T Consensus 74 ~~mLkd~G~~~vii-----GHSERR--f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLI-----NHSERR--MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEE-----CcccCC--CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 45789999999988 666666 5444 69999999999999999997
No 163
>PRK15492 triosephosphate isomerase; Provisional
Probab=41.90 E-value=49 Score=34.80 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=39.2
Q ss_pred HHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEecC
Q 006635 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (637)
Q Consensus 64 l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~G 118 (637)
...+|++|++.|-+ .|..++..|. +.+..+.+=++.|.++||.+|+++|
T Consensus 87 a~mLkd~G~~~vii-----GHSERR~~f~-Etd~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 87 PLMLKEIGTQLVMI-----GHSERRHKFG-ETDQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred HHHHHHcCCCEEEE-----CccccccccC-cchHHHHHHHHHHHHCCCEEEEEcC
Confidence 45789999999999 6777776664 3345666678889999999999987
No 164
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=41.73 E-value=1.1e+02 Score=33.24 Aligned_cols=154 Identities=18% Similarity=0.245 Sum_probs=83.9
Q ss_pred eeEEEccCcEEECCEEeEEEEEEee-CCCCCHh---HHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHH
Q 006635 27 STVTYDRKAILINGQRRILISGSIH-YPRSTPE---MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRF 102 (637)
Q Consensus 27 ~~v~~d~~~l~idG~~~~l~sG~~H-y~r~~~~---~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~f 102 (637)
..|++-|..+.+|. .=+-+.++ -+-.... .-...+...++.|.+||-. +.+ -.--||..+.
T Consensus 16 lGvTl~HEHl~~~~---~~~~~~~~~d~~~~~~~~a~~~~e~~~~~a~Gg~TIVD--------~T~----~~~GRdv~~m 80 (316)
T COG1735 16 LGVTLMHEHLFIDP---YEIAGGLKNDPYDEDDEVALAIAELKRLMARGGQTIVD--------ATN----IGIGRDVLKM 80 (316)
T ss_pred ccceeehhhhccch---HHHhhcCCCCcccccHHHHHHHHHHHHHHHcCCCeEee--------CCc----cccCcCHHHH
Confidence 34666677777775 11122222 2222111 1234566667788888854 211 0112699999
Q ss_pred HHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEccc
Q 006635 103 IKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQI 182 (637)
Q Consensus 103 l~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QI 182 (637)
.+.+++-||.++...|+|.-+.| |.|+...| ++.+...+++.+++ .+ .|+=|..=|
T Consensus 81 ~~vs~atglnIV~~TGfy~~~~~-----p~~~~~~~--------------i~~~ae~~v~ei~~-Gi----~gT~ikAGi 136 (316)
T COG1735 81 RRVAEATGLNIVAATGFYKAAFH-----PEYFALRP--------------IEELAEFVVKEIEE-GI----AGTGIKAGI 136 (316)
T ss_pred HHHHHHhCCcEEEeccccccccc-----hhHHhhCC--------------HHHHHHHHHHHHHh-cc----cCCccccce
Confidence 99999999999999999998886 47776544 44555555555551 21 123233222
Q ss_pred cccccCCccccCcccHHHHHHHHHHHhcCCCCcceeeecC
Q 006635 183 ENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMCKE 222 (637)
Q Consensus 183 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~~ 222 (637)
=-|-|.+.. .-..-.+-++.+++..+ .+++|+.+=.+
T Consensus 137 Ik~~~~~~~-iTp~Eek~lrAaA~A~~--~Tg~Pi~tHt~ 173 (316)
T COG1735 137 IKEAGGSPA-ITPLEEKSLRAAARAHK--ETGAPISTHTP 173 (316)
T ss_pred eeeccCccc-CCHHHHHHHHHHHHHhh--hcCCCeEEecc
Confidence 234443211 22222334444444433 45888875443
No 165
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=40.54 E-value=12 Score=32.27 Aligned_cols=37 Identities=22% Similarity=0.600 Sum_probs=28.7
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHc
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRV 109 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~ 109 (637)
.+..|-..+|.+-. .||.|-.|||. +|++||++|-|-
T Consensus 20 s~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alkT 56 (92)
T PF02228_consen 20 STHHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALKT 56 (92)
T ss_dssp THHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHcC
Confidence 56789988888764 68999999999 899999999874
No 166
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=40.40 E-value=82 Score=33.69 Aligned_cols=90 Identities=18% Similarity=0.292 Sum_probs=58.0
Q ss_pred HHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCE--EEEecCceee-------eecCCCCCCcc
Q 006635 63 LIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLY--AHLRIGPYVC-------AEWNFGGFPVW 133 (637)
Q Consensus 63 ~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~--vilr~GPyi~-------aEw~~GG~P~W 133 (637)
.|++-.++|.+.+.|=. -||.+ .+.+|++.|++.|+. |+.-+-|-.. ++...-++|.|
T Consensus 168 ~Lk~K~~aGA~~~iTQ~----------~Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~ 234 (296)
T PRK09432 168 NLKRKVDAGANRAITQF----------FFDVE---SYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAW 234 (296)
T ss_pred HHHHHHHcCCCeeeccc----------ccchH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHH
Confidence 45555678888888722 24544 789999999999954 5555555321 56777789999
Q ss_pred cccCCCeeeecCC-hhhHHHHHHHHHHHHHHHHhc
Q 006635 134 LKYVPGISFRTDN-GPFKVAMQGFTQKIVQMMKNE 167 (637)
Q Consensus 134 L~~~p~i~~Rt~~-~~y~~~~~~~~~~i~~~l~~~ 167 (637)
+.+.=+ .. .++ +..+++--++..++++.+.++
T Consensus 235 l~~~l~-~~-~d~~~~~~~~Gi~~a~e~i~~L~~~ 267 (296)
T PRK09432 235 MAKMFD-GL-DDDAETRKLVGASIAMDMVKILSRE 267 (296)
T ss_pred HHHHHH-hc-CCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 975211 11 233 345666667777777777743
No 167
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=39.59 E-value=63 Score=36.69 Aligned_cols=56 Identities=21% Similarity=0.395 Sum_probs=45.9
Q ss_pred eeCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEec
Q 006635 50 IHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 50 ~Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
.-|.+.|.+.-++.++++.+.|++.|+++..-|.. +++...++.|+++|+.|.+.+
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEEE
Confidence 44667777888889999999999999998876553 258889999999999886654
No 168
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=39.18 E-value=3.8e+02 Score=27.10 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=37.1
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEE
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vil 115 (637)
....+++.+++++++|++.|+..- .+.+..+. .++..+.++++++||.+..
T Consensus 13 ~~~~l~~~l~~~~~~G~~gvEi~~--------~~~~~~~~-~~~~~l~~~l~~~gl~i~~ 63 (274)
T COG1082 13 GELPLEEILRKAAELGFDGVELSP--------GDLFPADY-KELAELKELLADYGLEITS 63 (274)
T ss_pred CCCCHHHHHHHHHHhCCCeEecCC--------cccCCchh-hhHHHHHHHHHHcCcEEEe
Confidence 344578999999999999999864 12222111 1289999999999998865
No 169
>PRK14567 triosephosphate isomerase; Provisional
Probab=39.09 E-value=58 Score=34.21 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=38.8
Q ss_pred HHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEecC
Q 006635 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (637)
Q Consensus 64 l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~G 118 (637)
-.++|+.|++.|-+ .|..++..|. +.+..+.+=++.|.++||.+|+++|
T Consensus 78 ~~mLkd~G~~yvii-----GHSERR~~f~-Etd~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 78 ARMLEDIGCDYLLI-----GHSERRSLFA-ESDEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHHcCCCEEEE-----CcccccCccC-CCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 34789999999998 6777776554 3344577778889999999999987
No 170
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=38.94 E-value=1.6e+02 Score=26.88 Aligned_cols=68 Identities=15% Similarity=0.270 Sum_probs=43.4
Q ss_pred EEEEEEEEecCCcccccCCCccEEEEccCccEEEEEECCEEEEEEECCcc-----cceeEEEeeEEeecc-ccEEEEEEe
Q 006635 473 LWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRE-----NRRFTFSGPANLRAG-INKIALLSI 546 (637)
Q Consensus 473 lWY~t~v~v~~~~~~~~~~~~~~L~v~s~~h~~~VfVNG~~iGs~~g~~~-----~~~f~f~~~i~L~~G-~N~IslLs~ 546 (637)
+-++..|.++.++. -.+.+. ..+.+.+||||+.+....+... .........|.|..| .+.|.|.-.
T Consensus 48 ~~~~G~~~~~~~G~-------y~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~ 119 (145)
T PF07691_consen 48 VRWTGYFKPPETGT-------YTFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYF 119 (145)
T ss_dssp EEEEEEEEESSSEE-------EEEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEecccCce-------EEEEEE-ecccEEEEECCEEEEcCCccccccccccccceEEEEEEeeCCeeEEEEEEEE
Confidence 45677788876653 345555 5667999999999988875422 012234445667775 588887765
Q ss_pred cc
Q 006635 547 AV 548 (637)
Q Consensus 547 tv 548 (637)
+.
T Consensus 120 ~~ 121 (145)
T PF07691_consen 120 NR 121 (145)
T ss_dssp EC
T ss_pred EC
Confidence 54
No 171
>PRK14565 triosephosphate isomerase; Provisional
Probab=38.85 E-value=59 Score=33.80 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=35.9
Q ss_pred HHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEecC
Q 006635 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (637)
Q Consensus 64 l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~G 118 (637)
.+.+|++|++.+-+ .|..++-.|.=+ +..+.+=++.|.++||.+|+++|
T Consensus 78 ~~mLkd~G~~~vii-----GHSERR~~f~Et-d~~V~~Kv~~al~~gl~pIvCiG 126 (237)
T PRK14565 78 AKMLKECGCSYVIL-----GHSERRSTFHET-DSDIRLKAESAIESGLIPIICVG 126 (237)
T ss_pred HHHHHHcCCCEEEE-----CcccccCcCCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 45789999999998 677766555432 22333334889999999999997
No 172
>PRK14566 triosephosphate isomerase; Provisional
Probab=38.07 E-value=62 Score=34.16 Aligned_cols=49 Identities=27% Similarity=0.299 Sum_probs=38.8
Q ss_pred HHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEecC
Q 006635 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (637)
Q Consensus 64 l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~G 118 (637)
.+++|++|++.|-+ .|..++..|. +.+..+.+=++.|.++||.+|+++|
T Consensus 88 ~~mL~d~G~~~vii-----GHSERR~~f~-Etd~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 88 GQMLKDAGCRYVII-----GHSERRRMYG-ETSNIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred HHHHHHcCCCEEEE-----CcccccCCCC-cCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 45789999999998 6777776654 2344567788899999999999987
No 173
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=37.99 E-value=61 Score=35.21 Aligned_cols=44 Identities=25% Similarity=0.268 Sum_probs=27.7
Q ss_pred ccCcEEECCEEeEEEEEEeeCCCCCHhHHHHHH-HHHHHCCCCEEEE
Q 006635 32 DRKAILINGQRRILISGSIHYPRSTPEMWEDLI-RKAKDGGLDVIDT 77 (637)
Q Consensus 32 d~~~l~idG~~~~l~sG~~Hy~r~~~~~W~~~l-~k~K~~G~N~I~~ 77 (637)
|.+++.|||||++++=..-.-+ .....-+.+ +.+|++|+.-|-.
T Consensus 150 D~rYikVdGKPv~~Iy~p~~~p--d~~~~~~~wr~~a~~~G~~giyi 194 (345)
T PF14307_consen 150 DPRYIKVDGKPVFLIYRPGDIP--DIKEMIERWREEAKEAGLPGIYI 194 (345)
T ss_pred CCCceeECCEEEEEEECccccc--CHHHHHHHHHHHHHHcCCCceEE
Confidence 7889999999999884332211 222222223 5678899886554
No 174
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=37.94 E-value=81 Score=33.43 Aligned_cols=61 Identities=20% Similarity=0.269 Sum_probs=43.7
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCC--CCceeeecCcccHHHHHHHHHHcCCEEEEec
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP--SPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp--~~G~ydF~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
.++..++.++.+++.|.+.|-+|.-+..-.+ .++.-.++ ...+.+++++|+++|+.|.+..
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~-~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFS-EEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcC-HHHHHHHHHHHHHcCCEEEEEe
Confidence 4788999999999999999999875422111 11211122 2378899999999999988774
No 175
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=37.87 E-value=19 Score=39.74 Aligned_cols=36 Identities=19% Similarity=0.381 Sum_probs=28.3
Q ss_pred HHHHHHHHHcCCEE-EEecCceeeeecCCCCC--Cccccc
Q 006635 100 VRFIKTVQRVGLYA-HLRIGPYVCAEWNFGGF--PVWLKY 136 (637)
Q Consensus 100 ~~fl~la~~~GL~v-ilr~GPyi~aEw~~GG~--P~WL~~ 136 (637)
+++++.|.+.||.| |.||| ||-|....|-+ ++|+.+
T Consensus 176 E~Lvr~A~~rGLpv~I~Rpg-~I~gds~tG~~n~~D~~~R 214 (382)
T COG3320 176 EKLVREAGDRGLPVTIFRPG-YITGDSRTGALNTRDFLTR 214 (382)
T ss_pred HHHHHHHhhcCCCeEEEecC-eeeccCccCccccchHHHH
Confidence 56788999999997 89997 78887776654 777654
No 176
>PLN02429 triosephosphate isomerase
Probab=37.84 E-value=60 Score=35.20 Aligned_cols=45 Identities=24% Similarity=0.239 Sum_probs=34.6
Q ss_pred HHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHH----HHHcCCEEEEecC
Q 006635 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKT----VQRVGLYAHLRIG 118 (637)
Q Consensus 64 l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~l----a~~~GL~vilr~G 118 (637)
.+.+|+.|++.|-+ .|..++-.|. ..++++.. |.++||.+|+++|
T Consensus 140 a~mLkd~Gv~~Vii-----GHSERR~~f~-----Etd~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 140 VEQLKDLGCKWVIL-----GHSERRHVIG-----EKDEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred HHHHHHcCCCEEEe-----CccccCCCCC-----cCHHHHHHHHHHHHHCcCEEEEEcC
Confidence 45789999999988 6776665554 23555555 9999999999997
No 177
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=37.64 E-value=61 Score=29.46 Aligned_cols=38 Identities=16% Similarity=0.365 Sum_probs=27.8
Q ss_pred ccEEEEEECCEEEEEEECCcccceeEEEeeEEeeccccEEEEEEe
Q 006635 502 GHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSI 546 (637)
Q Consensus 502 ~h~~~VfVNG~~iGs~~g~~~~~~f~f~~~i~L~~G~N~IslLs~ 546 (637)
+....|||||+++|+...+ .|.+ +.+.+|.++|+.-+.
T Consensus 40 ~~~~~v~vdg~~ig~l~~g----~y~~---~~v~pG~h~i~~~~~ 77 (117)
T PF11008_consen 40 AVKPDVYVDGELIGELKNG----GYFY---VEVPPGKHTISAKSE 77 (117)
T ss_pred cccceEEECCEEEEEeCCC----eEEE---EEECCCcEEEEEecC
Confidence 5677899999999997743 2443 247789999987443
No 178
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=36.94 E-value=48 Score=35.49 Aligned_cols=62 Identities=15% Similarity=0.198 Sum_probs=42.4
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEccc----CCcCCC------CCceee------ecCcccHHHHHHHHHHcCCEEEEec
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDTYVF----WNGHEP------SPGHYN------FEGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~yvf----Wn~hEp------~~G~yd------F~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
+.+.-.+.|+.|-..++|+++.++- |.+--+ ..|.+. +=-..|++++++.|++.|+.||-.+
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPei 93 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPEI 93 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeeec
Confidence 7788999999999999999998875 433221 122121 1112499999999999999999663
No 179
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=36.91 E-value=3.5e+02 Score=29.60 Aligned_cols=77 Identities=14% Similarity=0.134 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEE
Q 006635 100 VRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIIL 179 (637)
Q Consensus 100 ~~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~ 179 (637)
..++..|+++|+.|++- |++|. +. + .|+ +.-++|++.+++.++++++ + +
T Consensus 67 ~~~~~~A~~~~v~v~~~-----------~~~~~-----~~--l--~~~---~~R~~fi~siv~~~~~~gf---D-----G 115 (358)
T cd02875 67 DELLCYAHSKGVRLVLK-----------GDVPL-----EQ--I--SNP---TYRTQWIQQKVELAKSQFM---D-----G 115 (358)
T ss_pred HHHHHHHHHcCCEEEEE-----------CccCH-----HH--c--CCH---HHHHHHHHHHHHHHHHhCC---C-----e
Confidence 58899999999999853 23331 11 1 234 2345789999999997765 2 4
Q ss_pred ccccccccCCccccCcccHHHHHHHHHHHh
Q 006635 180 SQIENEYGPESKSLGAAGHAYVNWAAKMAV 209 (637)
Q Consensus 180 ~QIENEyg~~~~~~~~~~~~y~~~l~~~~~ 209 (637)
+.|+=||-.... ......|...++++..
T Consensus 116 IdIDwE~p~~~~--~~d~~~~t~llkelr~ 143 (358)
T cd02875 116 INIDIEQPITKG--SPEYYALTELVKETTK 143 (358)
T ss_pred EEEcccCCCCCC--cchHHHHHHHHHHHHH
Confidence 566666643210 1123455555555543
No 180
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=36.80 E-value=91 Score=36.42 Aligned_cols=70 Identities=19% Similarity=0.181 Sum_probs=43.3
Q ss_pred ceEEEEEEEEecCCcccccCCCccEEEEccCccEEEEEECCEEEEEEECCcccceeEEEeeEEeeccccEEEEEEec
Q 006635 471 DYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIA 547 (637)
Q Consensus 471 dYlWY~t~v~v~~~~~~~~~~~~~~L~v~s~~h~~~VfVNG~~iGs~~g~~~~~~f~f~~~i~L~~G~N~IslLs~t 547 (637)
|--=|...|.+=.-+ +-+.+.|.++|+--.+.|+|||+-++.....-. .+.|.... ...|.|.|.|--.+
T Consensus 76 d~wtysr~frl~dl~----~~~~~~l~ie~vdtia~v~~n~~~v~~s~n~f~--~y~~~vt~-ii~~~n~i~~~f~s 145 (867)
T KOG2230|consen 76 DDWTYSRKFRLIDLD----DTVGAFLEIESVDTIATVYVNGQKVLHSRNQFL--PYHVNVTD-IIAGENDITIKFKS 145 (867)
T ss_pred cCccceeeeEEEEcc----ccccceEEEeecceeEEEEEccEEEeeccccce--eEEEeEEE-EecCCcceEEEeeh
Confidence 334477777762111 114578999999999999999999998764310 11133222 23378877765433
No 181
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=36.49 E-value=94 Score=33.50 Aligned_cols=72 Identities=14% Similarity=0.202 Sum_probs=52.9
Q ss_pred cCcEEECCEEeEEEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEEcc----cCCcCC---CC---Cc----eeeecCccc
Q 006635 33 RKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYV----FWNGHE---PS---PG----HYNFEGSYD 98 (637)
Q Consensus 33 ~~~l~idG~~~~l~sG~~Hy~r~~~~~W~~~l~k~K~~G~N~I~~yv----fWn~hE---p~---~G----~ydF~g~~d 98 (637)
.|.|++|--| |+ .+.+...+.|+.|...++|+...++ -|.+-- |+ .| .|. ..|
T Consensus 3 ~RG~mlD~aR--------~f--~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT---~~d 69 (311)
T cd06570 3 WRGLLIDVSR--------HF--IPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYT---QEQ 69 (311)
T ss_pred ccCeEEecCC--------CC--cCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccC---HHH
Confidence 4566666544 32 4689999999999999999999987 375421 11 22 232 349
Q ss_pred HHHHHHHHHHcCCEEEEec
Q 006635 99 LVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 99 L~~fl~la~~~GL~vilr~ 117 (637)
+..+++.|++.|+.||-.+
T Consensus 70 i~elv~yA~~rgI~vIPEI 88 (311)
T cd06570 70 IREVVAYARDRGIRVVPEI 88 (311)
T ss_pred HHHHHHHHHHcCCEEEEee
Confidence 9999999999999999764
No 182
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=35.91 E-value=62 Score=36.31 Aligned_cols=68 Identities=22% Similarity=0.258 Sum_probs=48.7
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEE-EEecCceeeeecCCCCCCc
Q 006635 55 STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA-HLRIGPYVCAEWNFGGFPV 132 (637)
Q Consensus 55 ~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~v-ilr~GPyi~aEw~~GG~P~ 132 (637)
...+.-+..|+.+|+.|+|+|-++..=..--+.+-.|.=. ..|-+..++++++.|..+ +|.+| ||||.
T Consensus 190 ~~~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~A-i~dAr~vfd~g~e~Gf~m~~LdiG---------GGf~g 258 (448)
T KOG0622|consen 190 CSLDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRDA-ISDARNVFDMGAELGFEMDILDIG---------GGFPG 258 (448)
T ss_pred CCHHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHHH-HHHHHHHHHHHHhcCceEEEeecC---------CCCCC
Confidence 4566788899999999999999976544333333333311 246677888899999985 68875 88863
No 183
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=35.87 E-value=31 Score=37.18 Aligned_cols=114 Identities=21% Similarity=0.418 Sum_probs=63.4
Q ss_pred CEEEEcccCCcCCCC-CceeeecCcccHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCeeeecCChhhHH
Q 006635 73 DVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKV 151 (637)
Q Consensus 73 N~I~~yvfWn~hEp~-~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~y~~ 151 (637)
+-|.++|.|++|=-. | =...++.|+++|..|+ |-.|. ||..| ..|+.. +.-+..+..
T Consensus 27 ~yiD~fvywsh~~i~iP----------~~~widaAHrnGV~vL---GTiif-e~~~~--~~~~~~---ll~~~~~g~--- 84 (311)
T PF03644_consen 27 QYIDIFVYWSHGLITIP----------PAGWIDAAHRNGVKVL---GTIIF-EWGGG--AEWCEE---LLEKDEDGS--- 84 (311)
T ss_dssp GG-SEEEET-TBSSE-------------HHHHHHHHHTT--EE---EEEEE-EEE----HHHHHH---HT---TTS----
T ss_pred cceeeEeecccccccCC----------CchhHHHHHhcCceEE---EEEEe-cCCch--HHHHHH---HHcCCcccc---
Confidence 467788889854332 2 1457999999999984 33444 77643 356533 111122222
Q ss_pred HHHHHHHHHHHHHHhccccccCCCceEEccccccccCCccccCcccHHHHHHHHHHHhc-CCCCccee
Q 006635 152 AMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAVG-LDTGVPWV 218 (637)
Q Consensus 152 ~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~-~g~~vP~~ 218 (637)
.++.++|+++.+-++. +| +++-+|+..+.. ...+.-+.+++.|++.+.+ -+..|-|+
T Consensus 85 --~~~A~kLi~ia~~yGF---DG---w~iN~E~~~~~~--~~~~~l~~F~~~l~~~~~~~~~~~v~WY 142 (311)
T PF03644_consen 85 --FPYADKLIEIAKYYGF---DG---WLINIETPLSGP--EDAENLIDFLKYLRKEAHENPGSEVIWY 142 (311)
T ss_dssp ---HHHHHHHHHHHHHT-----E---EEEEEEESSTTG--GGHHHHHHHHHHHHHHHHHT-T-EEEEE
T ss_pred --cHHHHHHHHHHHHcCC---Cc---eEEEecccCCch--hHHHHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 3558888888886654 44 888999998641 0112456788888888877 23446665
No 184
>PLN02561 triosephosphate isomerase
Probab=35.70 E-value=68 Score=33.68 Aligned_cols=49 Identities=12% Similarity=0.022 Sum_probs=39.1
Q ss_pred HHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEecC
Q 006635 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (637)
Q Consensus 64 l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~G 118 (637)
.+.+|++|++.|-+ .|..++..|.= .+..+.+=++.|.++||.+|+++|
T Consensus 81 ~~mL~d~G~~~vii-----GHSERR~~f~E-td~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 81 AEMLVNLGIPWVIL-----GHSERRALLGE-SNEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred HHHHHHcCCCEEEE-----CcccccCccCC-ChHHHHHHHHHHHHCcCEEEEEcC
Confidence 45789999999998 67777765543 245677778889999999999987
No 185
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=35.65 E-value=2e+02 Score=29.61 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=58.8
Q ss_pred CCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCC-Cceeeec----CcccHHHHHHHHHHcCCEEEEecCceeeeecCCC
Q 006635 54 RSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFE----GSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFG 128 (637)
Q Consensus 54 r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~-~G~ydF~----g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~G 128 (637)
..+++.-+..-+.+++.|+.+...-. ..|.+. ++.-|=. ....+++.|++|++.|..+|.-.
T Consensus 53 ~~~~~~~~~l~~~l~~~gl~i~~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~----------- 119 (283)
T PRK13209 53 DWSREQRLALVNALVETGFRVNSMCL--SAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLA----------- 119 (283)
T ss_pred CCCHHHHHHHHHHHHHcCCceeEEec--ccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEC-----------
Confidence 34677777888889999999876421 112111 1110000 11257888999999999876422
Q ss_pred CCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEcccccccc
Q 006635 129 GFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYG 187 (637)
Q Consensus 129 G~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg 187 (637)
|.+.|.. ..++...+.+...++.++++.++++ |-+.|||-.+
T Consensus 120 ~~~~~~~--------~~~~~~~~~~~~~l~~l~~~A~~~G---------V~i~iE~~~~ 161 (283)
T PRK13209 120 GYDVYYE--------QANNETRRRFIDGLKESVELASRAS---------VTLAFEIMDT 161 (283)
T ss_pred Ccccccc--------ccHHHHHHHHHHHHHHHHHHHHHhC---------CEEEEeecCC
Confidence 1122211 1224444556667778888877443 3456788643
No 186
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=35.03 E-value=58 Score=34.02 Aligned_cols=52 Identities=17% Similarity=0.258 Sum_probs=33.9
Q ss_pred HHHHHHHHHCCCCEEEEcccCCc---CCCCCceeeecCcccHHHHHHHHHHcCCEEEEe
Q 006635 61 EDLIRKAKDGGLDVIDTYVFWNG---HEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (637)
Q Consensus 61 ~~~l~k~K~~G~N~I~~yvfWn~---hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr 116 (637)
++.++++|++|++.|...+- .. ++...+..+++ +..+.++.++++|+.|...
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEEe
Confidence 56788999999999887644 11 11111223333 5667788999999986543
No 187
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=34.97 E-value=76 Score=37.71 Aligned_cols=75 Identities=16% Similarity=0.290 Sum_probs=54.2
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-ccc-----CCc-CCCC-Cceeeec---------CcccHHHHHHHHHHcCCEEEEec-
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDT-YVF-----WNG-HEPS-PGHYNFE---------GSYDLVRFIKTVQRVGLYAHLRI- 117 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~-yvf-----Wn~-hEp~-~G~ydF~---------g~~dL~~fl~la~~~GL~vilr~- 117 (637)
.+..|+ .++++|+++|-+ .++ |.. .-|. .|-||-+ ...|++++++.|+++||+||+..
T Consensus 76 ~~~~wd----yL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 76 DDALWK----ALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred ChHHHH----HHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 556664 678899999986 233 432 1133 4556632 23689999999999999999873
Q ss_pred -------CceeeeecCCCCCCccc
Q 006635 118 -------GPYVCAEWNFGGFPVWL 134 (637)
Q Consensus 118 -------GPyi~aEw~~GG~P~WL 134 (637)
-||.-||.+.+-+|.|.
T Consensus 152 pnHTs~ghdF~lAr~~~~~Y~g~Y 175 (688)
T TIGR02455 152 PAHTGKGADFRLAELAHGDYPGLY 175 (688)
T ss_pred CCCCCCCcchHHHhhcCCCCCCce
Confidence 24888999999999988
No 188
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=34.49 E-value=40 Score=36.87 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=40.3
Q ss_pred HHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEec
Q 006635 63 LIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 63 ~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
..+.++++|-++|.+.|+|.-.++.+ -+-.-..+|.++.+.|+++||-+++.+
T Consensus 111 sve~a~~~GAdAVk~lv~~~~d~~~~--~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 111 SVRRIKEAGADAVKLLLYYRPDEDDA--INDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred cHHHHHHcCCCEEEEEEEeCCCcchH--HHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 36789999999999999999654420 001122479999999999999998864
No 189
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=34.46 E-value=58 Score=39.05 Aligned_cols=55 Identities=24% Similarity=0.373 Sum_probs=41.5
Q ss_pred HHHHHHHCCCCEEEE-cccCCcCCCCC---c-eeee----------------cC-----cccHHHHHHHHHHcCCEEEEe
Q 006635 63 LIRKAKDGGLDVIDT-YVFWNGHEPSP---G-HYNF----------------EG-----SYDLVRFIKTVQRVGLYAHLR 116 (637)
Q Consensus 63 ~l~k~K~~G~N~I~~-yvfWn~hEp~~---G-~ydF----------------~g-----~~dL~~fl~la~~~GL~vilr 116 (637)
.|.-+|++|+++|+. +|+.-..|+.. | .|+| +. .+.+..+|+.++++||-|||.
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 499999999999996 78866666543 2 2222 22 247889999999999999998
Q ss_pred c
Q 006635 117 I 117 (637)
Q Consensus 117 ~ 117 (637)
.
T Consensus 285 V 285 (697)
T COG1523 285 V 285 (697)
T ss_pred E
Confidence 4
No 190
>PLN02784 alpha-amylase
Probab=33.59 E-value=83 Score=38.59 Aligned_cols=57 Identities=18% Similarity=0.184 Sum_probs=39.1
Q ss_pred HHHHHHHHHCCCCEEEEcccCCcCCC---CCc-eee----ecCcccHHHHHHHHHHcCCEEEEec
Q 006635 61 EDLIRKAKDGGLDVIDTYVFWNGHEP---SPG-HYN----FEGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 61 ~~~l~k~K~~G~N~I~~yvfWn~hEp---~~G-~yd----F~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
.+.+..++++|+++|...=+-....+ .+. -|+ |....+|.++++.|+++||.||+.+
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45677789999999997533222211 111 122 2234699999999999999999884
No 191
>PTZ00333 triosephosphate isomerase; Provisional
Probab=33.57 E-value=84 Score=33.01 Aligned_cols=49 Identities=24% Similarity=0.251 Sum_probs=40.4
Q ss_pred HHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEecC
Q 006635 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (637)
Q Consensus 64 l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~G 118 (637)
-+.+|++|++.|-+ .|..++..|. +.+..+.+=++.|.++||.+|+++|
T Consensus 82 ~~mL~d~G~~~vii-----GHSERR~~f~-Etd~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 82 AEMLKDLGINWTIL-----GHSERRQYFG-ETNEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHHcCCCEEEE-----CcccccCcCC-CCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 35789999999999 7877776663 3356788889999999999999987
No 192
>PF12733 Cadherin-like: Cadherin-like beta sandwich domain
Probab=33.52 E-value=99 Score=26.22 Aligned_cols=44 Identities=25% Similarity=0.317 Sum_probs=30.5
Q ss_pred cEEEEccCccEEEEEECCEEEEEEECCcccceeEEEeeEEeeccccE-EEEEEe
Q 006635 494 PTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINK-IALLSI 546 (637)
Q Consensus 494 ~~L~v~s~~h~~~VfVNG~~iGs~~g~~~~~~f~f~~~i~L~~G~N~-IslLs~ 546 (637)
..|........+.|.|||.-+... .....|.|..|.|. |.|-+.
T Consensus 27 v~v~a~~~~~~a~v~vng~~~~~~---------~~~~~i~L~~G~n~~i~i~Vt 71 (88)
T PF12733_consen 27 VTVTATPEDSGATVTVNGVPVNSG---------GYSATIPLNEGENTVITITVT 71 (88)
T ss_pred EEEEEEECCCCEEEEEcCEEccCC---------CcceeeEccCCCceEEEEEEE
Confidence 456666667789999999876543 11234568889998 887774
No 193
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=33.43 E-value=77 Score=37.33 Aligned_cols=53 Identities=25% Similarity=0.416 Sum_probs=44.7
Q ss_pred eeCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEE
Q 006635 50 IHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH 114 (637)
Q Consensus 50 ~Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vi 114 (637)
+=|.|+|.+.-+..++++++.|++.|+++...|.. +++...++.|+++|+.+.
T Consensus 89 vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~------------~~~~~ai~~ak~~G~~~~ 141 (593)
T PRK14040 89 LGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP------------RNLETALKAVRKVGAHAQ 141 (593)
T ss_pred eccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH------------HHHHHHHHHHHHcCCeEE
Confidence 55777888888899999999999999998766653 378899999999999864
No 194
>PLN02231 alanine transaminase
Probab=33.34 E-value=97 Score=35.85 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=45.3
Q ss_pred CCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEe
Q 006635 54 RSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (637)
Q Consensus 54 r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr 116 (637)
..+.+..++.++..+..|.++--+++. |-|.|.=-.++=+ .+.+++++|+++|+.+|..
T Consensus 252 ~~d~~~Le~~l~~~~~~~~~~k~ivl~-nP~NPTG~vls~e---~l~~Iv~~a~~~~l~lI~D 310 (534)
T PLN02231 252 GLEISELKKQLEDARSKGITVRALVVI-NPGNPTGQVLAEE---NQRDIVEFCKQEGLVLLAD 310 (534)
T ss_pred CCCHHHHHHHHHHHhhcCCCeEEEEEe-CCCCCCCcCCCHH---HHHHHHHHHHHcCCEEEEE
Confidence 456777777777777777766445555 7788887777655 8999999999999999876
No 195
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=32.93 E-value=1.3e+02 Score=35.37 Aligned_cols=110 Identities=13% Similarity=0.136 Sum_probs=73.3
Q ss_pred EEeEEEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEecCce
Q 006635 41 QRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPY 120 (637)
Q Consensus 41 ~~~~l~sG~~Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPy 120 (637)
++-+.+++..++.+.+.+.=-++|++-.++|.+.+-|=.++ |-+ .+.+|++.|++.++.+|.-+-|.
T Consensus 461 ~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~f----------d~~---~~~~~~~~~~~~~vpIi~GImPi 527 (612)
T PRK08645 461 KTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVY----------DEE---LIEELLEATKHLGVPIFIGIMPL 527 (612)
T ss_pred CCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccC----------CHH---HHHHHHHHHhcCCCCEEEEeeec
Confidence 45678888888776655544456666678999999994443 333 68888888887788888777665
Q ss_pred eee--------ecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHH
Q 006635 121 VCA--------EWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (637)
Q Consensus 121 i~a--------Ew~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~ 165 (637)
... +|..-=+|.|+.+.=. ... +...++++-.++..++++.++
T Consensus 528 ~s~k~~~~~~~~~~Gv~vP~~l~~~l~-~~~-d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 528 VSYRNAEFLHNEVPGITLPEEIRERMR-AVE-DKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred CCHHHHHHHHhCCCCCCCCHHHHHHHH-hcC-CchHHHHHHHHHHHHHHHHHH
Confidence 432 3445557888865200 011 224567777777777777777
No 196
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=32.87 E-value=1.9e+02 Score=30.21 Aligned_cols=61 Identities=20% Similarity=0.215 Sum_probs=45.9
Q ss_pred EEeEEEEEEeeCCCCC-------------HhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHH
Q 006635 41 QRRILISGSIHYPRST-------------PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQ 107 (637)
Q Consensus 41 ~~~~l~sG~~Hy~r~~-------------~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~ 107 (637)
-+++++..++-|++.. .++.++.++++++.|.|+|=+ -|.. | +..++++.
T Consensus 87 ~kIlll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~--~k~I--------~-------~~a~~~l~ 149 (261)
T cd03334 87 PRILLLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILV--EKSV--------S-------RIAQDLLL 149 (261)
T ss_pred CcEEEEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEE--CCcc--------C-------HHHHHHHH
Confidence 4688999999998853 455677899999999999866 1222 1 44578888
Q ss_pred HcCCEEEEecC
Q 006635 108 RVGLYAHLRIG 118 (637)
Q Consensus 108 ~~GL~vilr~G 118 (637)
++|+.++-|+.
T Consensus 150 k~gI~~v~~v~ 160 (261)
T cd03334 150 EAGITLVLNVK 160 (261)
T ss_pred HCCCEEEEecC
Confidence 99999988863
No 197
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=32.66 E-value=1.1e+02 Score=32.27 Aligned_cols=51 Identities=22% Similarity=0.283 Sum_probs=41.3
Q ss_pred CCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEe
Q 006635 54 RSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (637)
Q Consensus 54 r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr 116 (637)
..|.+.=+++++++.+.|++.|+++++-+. + ..+...++.|+++|+.|..-
T Consensus 87 ~~p~~~~~~di~~~~~~g~~~iri~~~~~~---------~---~~~~~~i~~ak~~G~~v~~~ 137 (275)
T cd07937 87 HYPDDVVELFVEKAAKNGIDIFRIFDALND---------V---RNLEVAIKAVKKAGKHVEGA 137 (275)
T ss_pred CCCcHHHHHHHHHHHHcCCCEEEEeecCCh---------H---HHHHHHHHHHHHCCCeEEEE
Confidence 346666788999999999999999887654 1 27889999999999987753
No 198
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=32.13 E-value=1.2e+02 Score=34.44 Aligned_cols=74 Identities=14% Similarity=0.259 Sum_probs=53.7
Q ss_pred EccCcEEECCEEeEEEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEEccc----CCcCC---------------------
Q 006635 31 YDRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVF----WNGHE--------------------- 85 (637)
Q Consensus 31 ~d~~~l~idG~~~~l~sG~~Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvf----Wn~hE--------------------- 85 (637)
|..|.|+||=-| |+ .+.+.-.+.|+.|-...+|+...++- |-+--
T Consensus 5 f~~RGlmLDvaR--------~f--~~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~ 74 (445)
T cd06569 5 FEYRGMHLDVAR--------NF--HSKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETT 74 (445)
T ss_pred CcccceeeeccC--------CC--CCHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhccccccccccccc
Confidence 456777777555 33 37899999999999999999999873 43210
Q ss_pred --------------CCCceeeecCcccHHHHHHHHHHcCCEEEEec
Q 006635 86 --------------PSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 86 --------------p~~G~ydF~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
+..|.|. ..|+..+++.|++.|+.||-.+
T Consensus 75 ~~~~~~~~~~~~~~~~~g~YT---~~di~eiv~yA~~rgI~VIPEI 117 (445)
T cd06569 75 CLLPQLGSGPDTNNSGSGYYS---RADYIEILKYAKARHIEVIPEI 117 (445)
T ss_pred ccccccccCcccCcccCCccC---HHHHHHHHHHHHHcCCEEEEcc
Confidence 0112232 3499999999999999998663
No 199
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=32.04 E-value=2e+02 Score=26.13 Aligned_cols=65 Identities=18% Similarity=0.288 Sum_probs=40.5
Q ss_pred EEEEEEEEecCCcccccCCCccEEEEccCccEEEEEECCEEEEEEECCcccceeEEEeeEEeecc-ccEEEEEEe
Q 006635 473 LWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAG-INKIALLSI 546 (637)
Q Consensus 473 lWY~t~v~v~~~~~~~~~~~~~~L~v~s~~h~~~VfVNG~~iGs~~g~~~~~~f~f~~~i~L~~G-~N~IslLs~ 546 (637)
+-++..|.++..+. -.+.+.+ -+.+.+||||+.+-...+.+.. ...-...|.|..| .+.|.|.-.
T Consensus 46 ~~~~g~i~~~~~G~-------y~f~~~~-~~~~~l~Idg~~vid~~~~~~~-~~~~~~~v~l~~g~~~~i~v~y~ 111 (136)
T smart00758 46 VRWTGYLKPPEDGE-------YTFSITS-DDGARLWIDGKLVIDNWGKHEA-RPSTSSTLYLLAGGTYPIRIEYF 111 (136)
T ss_pred EEEEEEEECCCCcc-------EEEEEEc-CCcEEEEECCcEEEcCCccCCC-ccccceeEEEeCCcEEEEEEEEE
Confidence 56677787766542 4666644 5568999999999876543221 1122334677777 477776553
No 200
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=32.02 E-value=40 Score=33.94 Aligned_cols=78 Identities=22% Similarity=0.314 Sum_probs=52.2
Q ss_pred CEE-eEEEEEEeeC-CCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCC--------CCCc----eeeecCcccHHHHHHH
Q 006635 40 GQR-RILISGSIHY-PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHE--------PSPG----HYNFEGSYDLVRFIKT 105 (637)
Q Consensus 40 G~~-~~l~sG~~Hy-~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hE--------p~~G----~ydF~g~~dL~~fl~l 105 (637)
+++ +.+.-|.-+. -++|.+.|.+.++++++-| ..+.++|.-.| -.++ ..++.|..+|..++.+
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~---~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~al 180 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERG---YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAAL 180 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT----EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhC---ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHH
Confidence 444 4444455454 4469999999999999999 55567787666 1122 5888898999999999
Q ss_pred HHHcCCEEEEecCce
Q 006635 106 VQRVGLYAHLRIGPY 120 (637)
Q Consensus 106 a~~~GL~vilr~GPy 120 (637)
++...+.|-...||-
T Consensus 181 i~~a~~~I~~Dtg~~ 195 (247)
T PF01075_consen 181 ISRADLVIGNDTGPM 195 (247)
T ss_dssp HHTSSEEEEESSHHH
T ss_pred HhcCCEEEecCChHH
Confidence 999999988887763
No 201
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=31.97 E-value=74 Score=32.74 Aligned_cols=59 Identities=17% Similarity=0.072 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCCC-ceeeecCcccHHHHHHHHHHcCCEEEEec
Q 006635 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPSP-GHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 58 ~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~-G~ydF~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
+.+++.|+.++++|.+.|.+.-+-...++.. -.++. -...|.++.++|+++|+.+.+.+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEe
Confidence 4578889999999999998631100001111 01110 11368888999999999999887
No 202
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=31.97 E-value=69 Score=33.35 Aligned_cols=65 Identities=18% Similarity=0.243 Sum_probs=37.9
Q ss_pred CCCHhHHHHHHHHHHHCCCCEEEEcccCCcC----CCCCceeee-cCcccHHHHHHHHHHcCCEEEEecC
Q 006635 54 RSTPEMWEDLIRKAKDGGLDVIDTYVFWNGH----EPSPGHYNF-EGSYDLVRFIKTVQRVGLYAHLRIG 118 (637)
Q Consensus 54 r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~h----Ep~~G~ydF-~g~~dL~~fl~la~~~GL~vilr~G 118 (637)
..+.+.|++..+.+|+.|+..+.|..--... +...-.|-- ++...=..||+.+++.|+.|||-.|
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG 121 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTG 121 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-T
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECC
Confidence 3689999999999999999999995331111 111111111 2223334578888889999999887
No 203
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=31.80 E-value=32 Score=36.97 Aligned_cols=116 Identities=19% Similarity=0.284 Sum_probs=66.0
Q ss_pred EeEEEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEE-EecCce
Q 006635 42 RRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH-LRIGPY 120 (637)
Q Consensus 42 ~~~l~sG~~Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vi-lr~GPy 120 (637)
..++++-+..--+. |+.|++.|..+-+.|+|+|.- +|+.-. |...|.++|+++|..++ +|.-|.
T Consensus 34 ~~liiGiA~~GG~l-p~~w~~~i~~Ai~~Gl~IvsG-----LH~~L~---------ddpel~~~A~~~g~~i~DvR~p~~ 98 (301)
T PF07755_consen 34 DTLIIGIAPAGGRL-PPSWRPVILEAIEAGLDIVSG-----LHDFLS---------DDPELAAAAKKNGVRIIDVRKPPK 98 (301)
T ss_dssp SEEEE---STTHCC-HCCHHHHHHHHHHTT-EEEE------SSS-HC---------CHHHHHCCHHCCT--EEETTS--S
T ss_pred CEEEEecCcCCCcC-CHHHHHHHHHHHHcCCCEEec-----Chhhhc---------cCHHHHHHHHHcCCeEeeccCCCc
Confidence 34445444444444 478999999999999999998 787544 67899999999999876 553121
Q ss_pred eeeecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEccccccccCCccccCcccHHH
Q 006635 121 VCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAY 200 (637)
Q Consensus 121 i~aEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~y 200 (637)
- ++.| .+ + ++ .-.+++|++ .|.- ++.||.+
T Consensus 99 ~--------~~~~----~g-------------------~----~~------~~~~~rv~~-----vGTD----cavGK~t 128 (301)
T PF07755_consen 99 D--------LPVA----SG-------------------R----IR------EVKAKRVLT-----VGTD----CAVGKMT 128 (301)
T ss_dssp S-----------------S-------------------G----GG------G-SSEEEEE-----EESS----SSSSHHH
T ss_pred c--------cccc----cC-------------------c----cc------cCCCCEEEE-----EccC----ccccHHH
Confidence 1 0000 00 0 00 124577766 2431 2367877
Q ss_pred HHH-HHHHHhcCCCCcceeeecC
Q 006635 201 VNW-AAKMAVGLDTGVPWVMCKE 222 (637)
Q Consensus 201 ~~~-l~~~~~~~g~~vP~~~~~~ 222 (637)
... |.+.+++.|+..-++-..|
T Consensus 129 Tal~L~~~l~~~G~~a~fvaTGQ 151 (301)
T PF07755_consen 129 TALELRRALRERGINAGFVATGQ 151 (301)
T ss_dssp HHHHHHHHHHHTT--EEEEE-SH
T ss_pred HHHHHHHHHHHcCCCceEEecCC
Confidence 665 7788889999987776555
No 204
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=31.72 E-value=71 Score=32.72 Aligned_cols=60 Identities=13% Similarity=-0.037 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEec
Q 006635 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 58 ~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
+..++.++.++++|..+|.+...+..-...+.+..-.-...|.++.++|+++|+.+.+.|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 447888999999999999874333211111122111112467888888999999999987
No 205
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=31.56 E-value=89 Score=32.84 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=37.2
Q ss_pred HHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEecC
Q 006635 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (637)
Q Consensus 64 l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~G 118 (637)
..++|+.|++.|-+ .|..++-.|+=+ ...+.+=++.|.++||.+||++|
T Consensus 81 ~~mL~d~G~~~vii-----GHSERR~~~~E~-d~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 81 AEMLKDLGAKYVLI-----GHSERRLYFGET-DELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred HHHHHHcCCCEEEE-----Cccccccccccc-hHHHHHHHHHHHHCCCeEEEEcC
Confidence 34789999999998 676666555432 23456778889999999999987
No 206
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=30.98 E-value=1.4e+02 Score=31.09 Aligned_cols=104 Identities=17% Similarity=0.230 Sum_probs=61.3
Q ss_pred EeeCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcC--CEEEEecCceee----
Q 006635 49 SIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVG--LYAHLRIGPYVC---- 122 (637)
Q Consensus 49 ~~Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~G--L~vilr~GPyi~---- 122 (637)
+.|+...+.+.=-+.|++=.++|.+.+-|=.+ ||.+ .+.+|++.|++.| +.|++.+=|-..
T Consensus 138 e~hp~~~~~~~~~~~L~~Ki~aGA~f~iTQ~~----------fd~~---~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l 204 (274)
T cd00537 138 EGHPEAPSLEEDIKRLKRKVDAGADFIITQLF----------FDND---AFLRFVDRCRAAGITVPIIPGIMPLTSYKQA 204 (274)
T ss_pred CcCCCCCCHHHHHHHHHHHHHCCCCEEeeccc----------ccHH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHH
Confidence 33444333333223444444569999998333 3333 7899999999998 556666666543
Q ss_pred ---eecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHh
Q 006635 123 ---AEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKN 166 (637)
Q Consensus 123 ---aEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~ 166 (637)
+++..-++|.|+.+.-. ....+....+++-.++..++++.+++
T Consensus 205 ~~~~~~~Gv~vP~~~~~~l~-~~~~~~~~~~~~g~~~~~~l~~~l~~ 250 (274)
T cd00537 205 KRFAKLCGVEIPDWLLERLE-KLKDDAEAVRAEGIEIAAELCDELLE 250 (274)
T ss_pred HHHHHhhCCCCCHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45556678999875210 01122234456666777777777774
No 207
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=30.47 E-value=33 Score=35.73 Aligned_cols=49 Identities=20% Similarity=0.229 Sum_probs=38.2
Q ss_pred HHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEecC
Q 006635 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (637)
Q Consensus 64 l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~G 118 (637)
.+++|+.|++.|-+ .|..++-.|. +.+..+.+=++.|.++||.+|+++|
T Consensus 77 ~~mL~d~G~~~vii-----GHSERR~~f~-Etd~~i~~Kv~~al~~gl~pIvCvG 125 (244)
T PF00121_consen 77 AEMLKDLGCKYVII-----GHSERRQYFG-ETDEIINKKVKAALENGLTPIVCVG 125 (244)
T ss_dssp HHHHHHTTESEEEE-----SCHHHHHHST--BHHHHHHHHHHHHHTT-EEEEEES
T ss_pred HHHHHHhhCCEEEe-----ccccccCccc-cccHHHHHHHHHHHHCCCEEEEEec
Confidence 45789999999998 6666554444 3456889999999999999999987
No 208
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=30.45 E-value=1.2e+02 Score=27.68 Aligned_cols=44 Identities=16% Similarity=0.320 Sum_probs=31.9
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEE
Q 006635 55 STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH 114 (637)
Q Consensus 55 ~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vi 114 (637)
.+++..++.++.+++.|+..|-.. +| ..-.+++++|+++||.++
T Consensus 63 ~~~~~~~~~v~~~~~~g~~~v~~~---------~g-------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 63 VPPDKVPEIVDEAAALGVKAVWLQ---------PG-------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp S-HHHHHHHHHHHHHHT-SEEEE----------TT-------S--HHHHHHHHHTT-EEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEE---------cc-------hHHHHHHHHHHHcCCEEE
Confidence 488999999999999998877652 22 244888999999999865
No 209
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=30.45 E-value=81 Score=32.80 Aligned_cols=41 Identities=15% Similarity=0.201 Sum_probs=33.0
Q ss_pred EECCEEeEEEEEEeeCCCC-CHhHHHHHHHHHHHCCCCEEEE
Q 006635 37 LINGQRRILISGSIHYPRS-TPEMWEDLIRKAKDGGLDVIDT 77 (637)
Q Consensus 37 ~idG~~~~l~sG~~Hy~r~-~~~~W~~~l~k~K~~G~N~I~~ 77 (637)
.+.|++++.+.|..|+... ...+-+--++.||++|+..|=.
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii~ 88 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLIL 88 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEEE
Confidence 4679999999999996554 5555578899999999988754
No 210
>PF08306 Glyco_hydro_98M: Glycosyl hydrolase family 98; InterPro: IPR013191 This domain is the putative catalytic domain of glycosyl hydrolase family 98 proteins.; PDB: 2VNO_B 2VNR_A 2VNG_B 2WMH_A 2WMG_A 2WMF_A 2WMK_A 2WMJ_B 2WMI_B.
Probab=30.32 E-value=40 Score=36.46 Aligned_cols=59 Identities=20% Similarity=0.438 Sum_probs=36.5
Q ss_pred EEEEEEee------CCCCCHhHHHHHHHHHHHC-CCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEE
Q 006635 44 ILISGSIH------YPRSTPEMWEDLIRKAKDG-GLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA 113 (637)
Q Consensus 44 ~l~sG~~H------y~r~~~~~W~~~l~k~K~~-G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~v 113 (637)
.+.||. | +.+.+.+-+++..++--.. |+|-++-| |..-++.. ....++|++|+++|-|.
T Consensus 104 q~~sgG-~~~~y~~~~~~~~~~~~e~fr~Ypnf~G~n~~Eqf--Wgf~~~~~--------~~~A~lLkl~akYGGy~ 169 (324)
T PF08306_consen 104 QPSSGG-HFPDYSAYHDIENTWYEEFFRDYPNFQGFNYAEQF--WGFDDPGS--------EHFADLLKLCAKYGGYF 169 (324)
T ss_dssp EEEECC-G-TTT-GCCG--HHHHHHHHHH-TTEEEEEEE--T--TS--TTHH--------HHHHHHHHHHHHTT-EE
T ss_pred EecCCC-CCCCccccccCChHHHHHHHHhCccccccccHhhh--eecCCchh--------HHHHHHHHHHHHhCceE
Confidence 345666 7 3445666677777777664 88888875 55555443 36889999999999988
No 211
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=29.90 E-value=1.9e+02 Score=31.10 Aligned_cols=68 Identities=22% Similarity=0.459 Sum_probs=49.7
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEccc-CCc-CCCCCce-----eeecCc--ccHHHHHHHHHHcCCEEEEecCceeee
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDTYVF-WNG-HEPSPGH-----YNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVCA 123 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~yvf-Wn~-hEp~~G~-----ydF~g~--~dL~~fl~la~~~GL~vilr~GPyi~a 123 (637)
+.++-.+.++++++.||-+=.+++- |.. ++..-|. |+|+-. -|..++++..++.|++|++.+=|+|+.
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~~ 97 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYLAD 97 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCceec
Confidence 7777899999999999877666554 532 2332232 344432 389999999999999999998777753
No 212
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=29.89 E-value=91 Score=34.73 Aligned_cols=56 Identities=20% Similarity=0.324 Sum_probs=39.3
Q ss_pred HHHHHHHHCCCCEEEE-cccCC---cCCCCCcee-----eecCcccHHHHHHHHHHcCCEEEEec
Q 006635 62 DLIRKAKDGGLDVIDT-YVFWN---GHEPSPGHY-----NFEGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 62 ~~l~k~K~~G~N~I~~-yvfWn---~hEp~~G~y-----dF~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
+.|.-+|++|+++|-+ +++=+ .|---.-.| .|.+..|+.++++.|++.||+||+..
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 6788899999999964 33311 221111011 46667899999999999999999873
No 213
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.52 E-value=3.6e+02 Score=28.07 Aligned_cols=83 Identities=10% Similarity=0.061 Sum_probs=50.7
Q ss_pred HHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEE--EEecCceeeeecCCCCCCcccccCC
Q 006635 61 EDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA--HLRIGPYVCAEWNFGGFPVWLKYVP 138 (637)
Q Consensus 61 ~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~v--ilr~GPyi~aEw~~GG~P~WL~~~p 138 (637)
++.++.+++.|+++|+.++- .|+--....-...+..+|-+.++++++.+ +.-=+||.
T Consensus 14 ~~a~~~~~~~G~~~~qif~~----~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~----------------- 72 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLK----SPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL----------------- 72 (274)
T ss_pred HHHHHHHHHhCCCEEEEEec----CccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee-----------------
Confidence 46899999999999999643 22211111111236788888899998863 33334543
Q ss_pred CeeeecCChhhHHHHHHHHHHHHHHHH
Q 006635 139 GISFRTDNGPFKVAMQGFTQKIVQMMK 165 (637)
Q Consensus 139 ~i~~Rt~~~~y~~~~~~~~~~i~~~l~ 165 (637)
+.+-+.|+.-++...+.+.+.++.-+
T Consensus 73 -iNlas~~~~~r~~sv~~~~~~i~~A~ 98 (274)
T TIGR00587 73 -INLASPDEEKEEKSLDVLDEELKRCE 98 (274)
T ss_pred -eecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12334466666666666666666555
No 214
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=29.32 E-value=3e+02 Score=29.42 Aligned_cols=87 Identities=17% Similarity=0.169 Sum_probs=54.1
Q ss_pred cHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCce
Q 006635 98 DLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPI 177 (637)
Q Consensus 98 dL~~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpI 177 (637)
.+.+.++.|++.|++|+|-+|- |. |.. . ..++ +..++|.+.|.+.++++.+
T Consensus 61 ~~~~~i~~~q~~G~KVllSiGG-----~~-~~~----------~--~~~~---~~~~~fa~sl~~~~~~~g~-------- 111 (312)
T cd02871 61 EFKADIKALQAKGKKVLISIGG-----AN-GHV----------D--LNHT---AQEDNFVDSIVAIIKEYGF-------- 111 (312)
T ss_pred HHHHHHHHHHHCCCEEEEEEeC-----CC-Ccc----------c--cCCH---HHHHHHHHHHHHHHHHhCC--------
Confidence 5788899999999999999872 11 100 0 1122 3456788889999997654
Q ss_pred EEccccccccCCccccCcccHHHHHHHHHHHhcCCC
Q 006635 178 ILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGLDT 213 (637)
Q Consensus 178 I~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~ 213 (637)
=++.|+=|+.............|++.|+++-...+-
T Consensus 112 DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~~~~ 147 (312)
T cd02871 112 DGLDIDLESGSNPLNATPVITNLISALKQLKDHYGP 147 (312)
T ss_pred CeEEEecccCCccCCcHHHHHHHHHHHHHHHHHcCC
Confidence 366788888642100001235677777766655543
No 215
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.23 E-value=1.1e+02 Score=23.64 Aligned_cols=55 Identities=15% Similarity=0.302 Sum_probs=39.2
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEE
Q 006635 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA 113 (637)
Q Consensus 57 ~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~v 113 (637)
|..-.+.++-+.+.|+|.+.++. +...+.....+-|.-. +.++.++..+++|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 34456788889999999998875 3323234555665533 4889999999999765
No 216
>PTZ00377 alanine aminotransferase; Provisional
Probab=29.18 E-value=1.4e+02 Score=33.78 Aligned_cols=60 Identities=17% Similarity=0.109 Sum_probs=43.6
Q ss_pred CCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEe
Q 006635 53 PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (637)
Q Consensus 53 ~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr 116 (637)
+..+++..++.+...+..|-++--+++. |-|.|.=-.|+=+ .+.+++++|+++|+++|..
T Consensus 198 ~~~d~~~l~~~l~~~~~~~~~~k~l~l~-~P~NPTG~~~s~e---~~~~i~~~a~~~~~~iI~D 257 (481)
T PTZ00377 198 WSLDQEELEEAYEQAVRNGITPRALVVI-NPGNPTGQVLTRD---VMEEIIKFCYEKGIVLMAD 257 (481)
T ss_pred CCCCHHHHHHHHHHHHhcCCCeeEEEEE-CCCCCCCcCCCHH---HHHHHHHHHHHCCCEEEEe
Confidence 3456677777776555555555445665 6788887777655 7999999999999999866
No 217
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=29.17 E-value=83 Score=32.44 Aligned_cols=78 Identities=22% Similarity=0.221 Sum_probs=55.6
Q ss_pred eEEEEEEeeCCC-CCHhHHHHHHHHHHHCCCCEEEEcccCCcCCC-----------CCceeeecCcccHHHHHHHHHHcC
Q 006635 43 RILISGSIHYPR-STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-----------SPGHYNFEGSYDLVRFIKTVQRVG 110 (637)
Q Consensus 43 ~~l~sG~~Hy~r-~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp-----------~~G~ydF~g~~dL~~fl~la~~~G 110 (637)
+.+..|+-+..| ++.+.|.+.++++++.|++.|-+. .-.|. .+...++.|..+|..++.+.+...
T Consensus 124 i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g---~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~ 200 (279)
T cd03789 124 VVLPPGASGPAKRWPAERFAALADRLLARGARVVLTG---GPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARAD 200 (279)
T ss_pred EEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEe---chhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCC
Confidence 333444444444 599999999999998888777543 22211 234567888889999999999999
Q ss_pred CEEEEecCceeee
Q 006635 111 LYAHLRIGPYVCA 123 (637)
Q Consensus 111 L~vilr~GPyi~a 123 (637)
+.+-...||.--|
T Consensus 201 l~I~~Dsg~~HlA 213 (279)
T cd03789 201 LVVTNDSGPMHLA 213 (279)
T ss_pred EEEeeCCHHHHHH
Confidence 9988888775444
No 218
>PRK10658 putative alpha-glucosidase; Provisional
Probab=29.10 E-value=1.5e+02 Score=35.33 Aligned_cols=66 Identities=17% Similarity=0.286 Sum_probs=47.4
Q ss_pred CHhHHHHHHHHHHHCCCCEEE--EcccCCcCCC-CCceeeecCc--ccHHHHHHHHHHcCCEEEEecCceeee
Q 006635 56 TPEMWEDLIRKAKDGGLDVID--TYVFWNGHEP-SPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVCA 123 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~--~yvfWn~hEp-~~G~ydF~g~--~dL~~fl~la~~~GL~vilr~GPyi~a 123 (637)
+.+.-.+.++++|+.||-+=. .=.+|. +. .-+.|.|+-. -|..++++..++.|+++++.+=|||..
T Consensus 281 ~e~~v~~~~~~~r~~~iP~d~i~lD~~w~--~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~ 351 (665)
T PRK10658 281 DEATVNSFIDGMAERDLPLHVFHFDCFWM--KEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQ 351 (665)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEchhhh--cCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCC
Confidence 455567889999999986433 334453 22 2245666533 288999999999999999999999864
No 219
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=28.86 E-value=1.8e+02 Score=29.30 Aligned_cols=96 Identities=19% Similarity=0.266 Sum_probs=54.4
Q ss_pred eeCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEecCceeeeecCCCC
Q 006635 50 IHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGG 129 (637)
Q Consensus 50 ~Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~GG 129 (637)
+|-==..|+.| +++++++|.+.|.. +.|.. .++.++++.++++|+.+=|-+-| +++---
T Consensus 62 vHLMv~~P~~~---i~~~~~~g~~~i~~-----H~E~~---------~~~~~~i~~ik~~g~k~GialnP----~T~~~~ 120 (201)
T PF00834_consen 62 VHLMVENPERY---IEEFAEAGADYITF-----HAEAT---------EDPKETIKYIKEAGIKAGIALNP----ETPVEE 120 (201)
T ss_dssp EEEESSSGGGH---HHHHHHHT-SEEEE-----EGGGT---------TTHHHHHHHHHHTTSEEEEEE-T----TS-GGG
T ss_pred EEeeeccHHHH---HHHHHhcCCCEEEE-----cccch---------hCHHHHHHHHHHhCCCEEEEEEC----CCCchH
Confidence 45323356655 67788889999987 34422 27899999999999986433322 222222
Q ss_pred CCcccccCCCeeeecCCh-----hhHHHHHHHHHHHHHHHHh
Q 006635 130 FPVWLKYVPGISFRTDNG-----PFKVAMQGFTQKIVQMMKN 166 (637)
Q Consensus 130 ~P~WL~~~p~i~~Rt~~~-----~y~~~~~~~~~~i~~~l~~ 166 (637)
+-.+|.....+.+=|-+| .|.+.+-+=++++.+++++
T Consensus 121 ~~~~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~ 162 (201)
T PF00834_consen 121 LEPYLDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPE 162 (201)
T ss_dssp GTTTGCCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHH
T ss_pred HHHHhhhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHh
Confidence 334554433333434444 5666666666666666664
No 220
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=28.77 E-value=1e+02 Score=33.95 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=44.7
Q ss_pred CCEEeEEEEEEeeC---------------------CCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcc
Q 006635 39 NGQRRILISGSIHY---------------------PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSY 97 (637)
Q Consensus 39 dG~~~~l~sG~~Hy---------------------~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~ 97 (637)
.+++.++.|.+-|| .|+..+.-++.|++.++.|..-+ .|.=..-...-|.+|
T Consensus 139 ~~~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~--~vvat~Gtt~~Ga~D----- 211 (373)
T PF00282_consen 139 IPKPVIYVSEQAHYSIEKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPF--AVVATAGTTNTGAID----- 211 (373)
T ss_dssp CSSEEEEEETTS-THHHHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEE--EEEEEBS-TTTSBB------
T ss_pred ccccccccccccccHHHHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccce--eeeccCCCccccccc-----
Confidence 45677788887887 34556666777777788876432 122224555566666
Q ss_pred cHHHHHHHHHHcCCEEEEe
Q 006635 98 DLVRFIKTVQRVGLYAHLR 116 (637)
Q Consensus 98 dL~~fl~la~~~GL~vilr 116 (637)
||.++.++|+++++++.+.
T Consensus 212 ~l~~i~~i~~~~~~wlHVD 230 (373)
T PF00282_consen 212 PLEEIADICEKYNIWLHVD 230 (373)
T ss_dssp SHHHHHHHHHHCT-EEEEE
T ss_pred CHHHHhhhccccceeeeec
Confidence 8888889998888887776
No 221
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=28.75 E-value=1.6e+02 Score=28.80 Aligned_cols=52 Identities=40% Similarity=0.508 Sum_probs=25.6
Q ss_pred ccEEEEc----cCccEEEEEECCEEEEEEE-------------CCc-cc-ceeEEEeeE-EeeccccEEEEEE
Q 006635 493 KPTLTVE----SAGHAVHVFINGQFLGSAF-------------GTR-EN-RRFTFSGPA-NLRAGINKIALLS 545 (637)
Q Consensus 493 ~~~L~v~----s~~h~~~VfVNG~~iGs~~-------------g~~-~~-~~f~f~~~i-~L~~G~N~IslLs 545 (637)
..+|+|. +.+-++.|.|||+ .+... |.+ +. ..+.|+.|- .|++|.|+|+|=+
T Consensus 79 ~~tL~i~la~a~~~~~~~V~vNg~-~~~~~~~~~~~d~~~~r~g~~~G~~~~~~~~ipa~~L~~G~Nti~lt~ 150 (167)
T PF14683_consen 79 TYTLRIALAGASAGGRLQVSVNGW-SGPFPSAPFGNDNAIYRSGIHRGNYRLYEFDIPASLLKAGENTITLTV 150 (167)
T ss_dssp -EEEEEEEEEEETT-EEEEEETTE-E-----------S--GGGT---S---EEEEEE-TTSS-SEEEEEEEEE
T ss_pred cEEEEEEeccccCCCCEEEEEcCc-cCCccccccCCCCceeeCceecccEEEEEEEEcHHHEEeccEEEEEEE
Confidence 3566655 2567899999994 43311 111 11 223344333 6889999887544
No 222
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=28.74 E-value=1.5e+02 Score=31.11 Aligned_cols=60 Identities=20% Similarity=0.314 Sum_probs=40.2
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCC---ceeeecCcccHHHHHHHHHHc-CCEEEEecCc
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSP---GHYNFEGSYDLVRFIKTVQRV-GLYAHLRIGP 119 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~---G~ydF~g~~dL~~fl~la~~~-GL~vilr~GP 119 (637)
.++.|.+..++++++|++.|+.-+ .-|.. |..--...+.+.++++.+++. ++.|.++.+|
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~----~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~ 163 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNI----SCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP 163 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEC----CCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCC
Confidence 578999999999999999999964 33332 211111123566777877776 6777777654
No 223
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=28.74 E-value=63 Score=35.07 Aligned_cols=53 Identities=25% Similarity=0.330 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCE--EE-Eec
Q 006635 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLY--AH-LRI 117 (637)
Q Consensus 59 ~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~--vi-lr~ 117 (637)
.|++.+.+++..|+ +|++.-+-...|..|+.|. |+.+.+++|.+.||- +| |||
T Consensus 444 ~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesYK-----dVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 444 THESVLDKLRSRGI-AIRVASPKLVMEEAPESYK-----DVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred cHHHHHHHHHhCCe-EEEeCCccchhhhCchhhh-----hHHHHhhhhhhcccchhhhcccc
Confidence 39999999999998 6888888999999999986 899999999999996 33 665
No 224
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=28.39 E-value=2.1e+02 Score=28.59 Aligned_cols=65 Identities=15% Similarity=0.159 Sum_probs=41.3
Q ss_pred EEEEEeeCCCCCHhHHHHHHHHHH-HCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEecC
Q 006635 45 LISGSIHYPRSTPEMWEDLIRKAK-DGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (637)
Q Consensus 45 l~sG~~Hy~r~~~~~W~~~l~k~K-~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~G 118 (637)
+..+.+.+.. ++...+.+++.. +.|+-.|..+-.. +.++.........++++|+|+|+-|++-+|
T Consensus 73 ~~~~~~~~~~--~~~~~~~l~~~~~~~g~~Gv~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~pv~~H~g 138 (273)
T PF04909_consen 73 IGFAAIPPPD--PEDAVEELERALQELGFRGVKLHPDL-------GGFDPDDPRLDDPIFEAAEELGLPVLIHTG 138 (273)
T ss_dssp EEEEEETTTS--HHHHHHHHHHHHHTTTESEEEEESSE-------TTCCTTSGHCHHHHHHHHHHHT-EEEEEES
T ss_pred EEEEEecCCC--chhHHHHHHHhccccceeeeEecCCC-------CccccccHHHHHHHHHHHHhhccceeeecc
Confidence 3444455444 455655555555 9999999975432 222222222236999999999999999987
No 225
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=27.30 E-value=89 Score=31.78 Aligned_cols=60 Identities=17% Similarity=0.016 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEec
Q 006635 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 58 ~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
+.+++.++.++++|..+|.+..-+.--++..-+..-.-...|.++.+.|++.|+.+.+.+
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 678889999999999999863322100000001000112357888899999999999987
No 226
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=27.14 E-value=3e+02 Score=30.13 Aligned_cols=83 Identities=17% Similarity=0.432 Sum_probs=55.9
Q ss_pred CCCHhHHHHHHHHHHHCCCCEEEEccc-CCc---------CCCCCceeeecCcccHHHHHHHHHHcCCEEEEecCceeee
Q 006635 54 RSTPEMWEDLIRKAKDGGLDVIDTYVF-WNG---------HEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCA 123 (637)
Q Consensus 54 r~~~~~W~~~l~k~K~~G~N~I~~yvf-Wn~---------hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~a 123 (637)
++||..| +..++.-|+-++-|.++ |.. ..+++++|.+ .++++++|+.+|..=+ .|+-
T Consensus 45 ~iPp~~~---idaAHknGV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~-----a~kLv~lak~yGfDGw-----~iN~ 111 (339)
T cd06547 45 TIPPADW---INAAHRNGVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPV-----ADKLVEVAKYYGFDGW-----LINI 111 (339)
T ss_pred cCCCcHH---HHHHHhcCCeEEEEEEecCCCchHHHHHHhccCcccchHH-----HHHHHHHHHHhCCCce-----Eeee
Confidence 4687888 55889999999999865 741 1124555443 4888999999887522 2333
Q ss_pred ecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHh
Q 006635 124 EWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKN 166 (637)
Q Consensus 124 Ew~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~ 166 (637)
|... .++.-.+.+..|++.+-+.+++
T Consensus 112 E~~~-----------------~~~~~~~~l~~F~~~L~~~~~~ 137 (339)
T cd06547 112 ETEL-----------------GDAEKAKRLIAFLRYLKAKLHE 137 (339)
T ss_pred eccC-----------------CcHHHHHHHHHHHHHHHHHHhh
Confidence 4321 1355668888899888888884
No 227
>PRK09267 flavodoxin FldA; Validated
Probab=27.10 E-value=3.6e+02 Score=25.66 Aligned_cols=74 Identities=8% Similarity=0.029 Sum_probs=48.4
Q ss_pred ECCEEeEEEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEE
Q 006635 38 INGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH 114 (637)
Q Consensus 38 idG~~~~l~sG~~Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vi 114 (637)
++.-..++++...|....++..|.+.+++++...+.-..+.+|= ......-.-.| ..-+..+-+++.+.|..++
T Consensus 44 l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaifg-~g~~~~~~~~~--~~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 44 FEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALFG-LGDQEDYAEYF--CDAMGTLYDIVEPRGATIV 117 (169)
T ss_pred HhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEEe-cCCCCcchHHH--HHHHHHHHHHHHHCCCEEE
Confidence 34556789999999877778889988988887777777777773 22111100011 1235667778888896654
No 228
>PLN03036 glutamine synthetase; Provisional
Probab=26.94 E-value=2.2e+02 Score=32.31 Aligned_cols=67 Identities=16% Similarity=0.357 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCc-cc---------H-HHHH-HHHHHcCCEEEEecCceeeeec
Q 006635 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS-YD---------L-VRFI-KTVQRVGLYAHLRIGPYVCAEW 125 (637)
Q Consensus 58 ~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~-~d---------L-~~fl-~la~~~GL~vilr~GPyi~aEw 125 (637)
+.-++..+.+.++|+++-.+ .||--||||-|.=. .| + +.++ ++|+++|+.+-.-|=|+. ++|
T Consensus 230 ~i~~~i~~a~~~~GI~Ie~~-----~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~~-gd~ 303 (432)
T PLN03036 230 DISDAHYKACLYAGINISGT-----NGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIE-GDW 303 (432)
T ss_pred HHHHHHHHHHHHCCCCeEEE-----EcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcCC-CCc
Confidence 34455666889999999998 89999999988622 11 1 2222 357899999999988853 677
Q ss_pred CCCCC
Q 006635 126 NFGGF 130 (637)
Q Consensus 126 ~~GG~ 130 (637)
+.-|.
T Consensus 304 ~GSGm 308 (432)
T PLN03036 304 NGAGC 308 (432)
T ss_pred CCCCc
Confidence 77665
No 229
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=26.82 E-value=4.7e+02 Score=26.04 Aligned_cols=124 Identities=23% Similarity=0.297 Sum_probs=63.0
Q ss_pred EEeEEEEEEeeCCC--C-CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHH-HHHHHHcCCE-EEE
Q 006635 41 QRRILISGSIHYPR--S-TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRF-IKTVQRVGLY-AHL 115 (637)
Q Consensus 41 ~~~~l~sG~~Hy~r--~-~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~f-l~la~~~GL~-vil 115 (637)
||++.++-+|=--. + |--.|...+ .+..|++.|-. =|+|+--++.+ .++.++..-. ++|
T Consensus 2 k~~v~YGsSItqG~~Asrpg~~~~~~~--aR~l~~~~iNL--------------GfsG~~~le~~~a~~ia~~~a~~~~l 65 (178)
T PF14606_consen 2 KRWVAYGSSITQGACASRPGMAYPAIL--ARRLGLDVINL--------------GFSGNGKLEPEVADLIAEIDADLIVL 65 (178)
T ss_dssp -EEEEEE-TT-TTTT-SSGGGSHHHHH--HHHHT-EEEEE--------------E-TCCCS--HHHHHHHHHS--SEEEE
T ss_pred CeEEEECChhhcCCCCCCCcccHHHHH--HHHcCCCeEee--------------eecCccccCHHHHHHHhcCCCCEEEE
Confidence 67788888876422 3 344498766 56779999876 47776555544 3444443223 346
Q ss_pred ecCceeeeecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEcc-ccccccCCccccC
Q 006635 116 RIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQ-IENEYGPESKSLG 194 (637)
Q Consensus 116 r~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~Q-IENEyg~~~~~~~ 194 (637)
..||- .+...|.+.+..|++.|.+. ...=|||+++ +-.+-+.....-+
T Consensus 66 d~~~N-----------------------~~~~~~~~~~~~fv~~iR~~--------hP~tPIllv~~~~~~~~~~~~~~~ 114 (178)
T PF14606_consen 66 DCGPN-----------------------MSPEEFRERLDGFVKTIREA--------HPDTPILLVSPIPYPAGYFDNSRG 114 (178)
T ss_dssp EESHH-----------------------CCTTTHHHHHHHHHHHHHTT---------SSS-EEEEE----TTTTS--TTS
T ss_pred EeecC-----------------------CCHHHHHHHHHHHHHHHHHh--------CCCCCEEEEecCCccccccCchHH
Confidence 66652 13346777777777765322 2234999998 5444443322223
Q ss_pred cccHHHHHHHHHHHhcC
Q 006635 195 AAGHAYVNWAAKMAVGL 211 (637)
Q Consensus 195 ~~~~~y~~~l~~~~~~~ 211 (637)
....++.+.+++.++++
T Consensus 115 ~~~~~~~~~~r~~v~~l 131 (178)
T PF14606_consen 115 ETVEEFREALREAVEQL 131 (178)
T ss_dssp --HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456666677766654
No 230
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=26.55 E-value=1.6e+02 Score=24.77 Aligned_cols=13 Identities=8% Similarity=-0.115 Sum_probs=8.4
Q ss_pred CccEEEEEeecCC
Q 006635 371 QQKCAAFLSNYNT 383 (637)
Q Consensus 371 ~~~~~~Fl~N~~~ 383 (637)
++.....+.|+.+
T Consensus 41 ~~~~l~v~~Nls~ 53 (89)
T PF11941_consen 41 GGERLLVAFNLSD 53 (89)
T ss_dssp TTEEEEEEEE-SS
T ss_pred CCceEEEEEecCC
Confidence 4567777788765
No 231
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=26.47 E-value=59 Score=39.89 Aligned_cols=58 Identities=24% Similarity=0.475 Sum_probs=42.6
Q ss_pred CHhHHHHHHHHHHHCCCCEEE------------EcccCCcCCC------CCceeeecCcccHHHHHHHHHH-cCCEEEEe
Q 006635 56 TPEMWEDLIRKAKDGGLDVID------------TYVFWNGHEP------SPGHYNFEGSYDLVRFIKTVQR-VGLYAHLR 116 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~------------~yvfWn~hEp------~~G~ydF~g~~dL~~fl~la~~-~GL~vilr 116 (637)
|-+.|+.+|+++|+.|.|+|. .|-.=+.||- .-++|.|+ |+..+++-+++ -++..|-.
T Consensus 140 pl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~e---DV~~lV~~l~rewnvlsi~D 216 (1521)
T KOG3625|consen 140 PLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFE---DVGQLVEKLKREWNVLSITD 216 (1521)
T ss_pred ChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHH---HHHHHHHHHHhhcCeeeeeh
Confidence 678999999999999999997 3444444443 23567888 89999998864 56665533
No 232
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=26.43 E-value=2e+02 Score=30.30 Aligned_cols=74 Identities=18% Similarity=0.332 Sum_probs=48.7
Q ss_pred cHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccccCCCeeeecCChhhHHHHHHHH-----------HHHHHHHHh
Q 006635 98 DLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFT-----------QKIVQMMKN 166 (637)
Q Consensus 98 dL~~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~-----------~~i~~~l~~ 166 (637)
...+++..|++.|-..+|-| |---||+|.|... ++.+-+.++.=+++.++|. .+|+.+-+
T Consensus 38 K~~~~~~Eaa~~Ga~LV~fP------EAfiGGYPrg~~F--g~~~G~r~~eGR~ef~kY~a~AIev~gpEv~~l~~la~- 108 (337)
T KOG0805|consen 38 KAEKYIVEAASKGAELVLFP------EAFIGGYPRGFRF--GLAVGVRNEEGRDEFRKYHASAIEVPGPEVERLAELAK- 108 (337)
T ss_pred HHHHHHHHHhcCCceEEEee------hHhccCCCCccee--eEEEeecchhhhHHHHHHHHHhhcCCChHHHHHHHHhh-
Confidence 46788899999999999988 5556999999865 3445445554445555553 33333333
Q ss_pred ccccccCCCceEEcccccc
Q 006635 167 EKLFASQGGPIILSQIENE 185 (637)
Q Consensus 167 ~~l~~~~gGpII~~QIENE 185 (637)
.+.=.++|--||.|
T Consensus 109 -----~~~v~lv~G~iEre 122 (337)
T KOG0805|consen 109 -----KNNVYLVMGAIERE 122 (337)
T ss_pred -----cCCeEEEEEEEecc
Confidence 33445677778887
No 233
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=26.17 E-value=1.9e+02 Score=30.30 Aligned_cols=81 Identities=21% Similarity=0.295 Sum_probs=56.8
Q ss_pred eEEEccCcEEECCEEeEEEEEEeeCCCC-CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeec--CcccHHHHHH
Q 006635 28 TVTYDRKAILINGQRRILISGSIHYPRS-TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFE--GSYDLVRFIK 104 (637)
Q Consensus 28 ~v~~d~~~l~idG~~~~l~sG~~Hy~r~-~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~--g~~dL~~fl~ 104 (637)
.|... .+.+.+...+++.| +-.. ..+.-.+..+.+|+.|....+.|+|=+...| |.|. |..-|..+-+
T Consensus 13 ~i~~~--~~~~g~~~~~~IAG---pc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp----~s~~g~g~~gl~~l~~ 83 (260)
T TIGR01361 13 VVDVG--GVKIGEGSPIVIAG---PCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSP----YSFQGLGEEGLKLLRR 83 (260)
T ss_pred EEEEC--CEEEcCCcEEEEEe---CCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCC----ccccccHHHHHHHHHH
Confidence 35553 35566555667777 2222 5666678888899999998888888744443 4455 3567888888
Q ss_pred HHHHcCCEEEEec
Q 006635 105 TVQRVGLYAHLRI 117 (637)
Q Consensus 105 la~~~GL~vilr~ 117 (637)
.|++.||.++-.|
T Consensus 84 ~~~~~Gl~~~t~~ 96 (260)
T TIGR01361 84 AADEHGLPVVTEV 96 (260)
T ss_pred HHHHhCCCEEEee
Confidence 9999999998775
No 234
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=26.10 E-value=3.5e+02 Score=29.82 Aligned_cols=82 Identities=23% Similarity=0.300 Sum_probs=56.2
Q ss_pred eEEEccCcEEECCEEeEEEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecC--cccHHHHHHH
Q 006635 28 TVTYDRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEG--SYDLVRFIKT 105 (637)
Q Consensus 28 ~v~~d~~~l~idG~~~~l~sG~~Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g--~~dL~~fl~l 105 (637)
.|.. ..+.+.|...+++.|.-- --..+.-.+.-+.+|+.|+..++-..|= |+.--|.|.| ...+..+-+.
T Consensus 106 ~~~~--~~~~~g~~~~~~iaGpc~--iE~~~~~~~~A~~lk~~g~~~~r~~~~k----pRtsp~~f~g~~~e~l~~L~~~ 177 (360)
T PRK12595 106 IVDV--KGEVIGDGNQSFIFGPCS--VESYEQVEAVAKALKAKGLKLLRGGAFK----PRTSPYDFQGLGVEGLKILKQV 177 (360)
T ss_pred EEEE--CCEEecCCCeeeEEeccc--ccCHHHHHHHHHHHHHcCCcEEEccccC----CCCCCccccCCCHHHHHHHHHH
Confidence 3444 346666554455666510 0146667778888999999999976655 4444466765 3578888999
Q ss_pred HHHcCCEEEEec
Q 006635 106 VQRVGLYAHLRI 117 (637)
Q Consensus 106 a~~~GL~vilr~ 117 (637)
|++.||.++-.|
T Consensus 178 ~~~~Gl~~~t~v 189 (360)
T PRK12595 178 ADEYGLAVISEI 189 (360)
T ss_pred HHHcCCCEEEee
Confidence 999999998775
No 235
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=26.06 E-value=1.4e+02 Score=31.59 Aligned_cols=80 Identities=15% Similarity=0.091 Sum_probs=51.5
Q ss_pred CEEeEEEE-EE-e-eCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCc------CCCC-CceeeecCcccHHHHHHHHHHc
Q 006635 40 GQRRILIS-GS-I-HYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNG------HEPS-PGHYNFEGSYDLVRFIKTVQRV 109 (637)
Q Consensus 40 G~~~~l~s-G~-~-Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~------hEp~-~G~ydF~g~~dL~~fl~la~~~ 109 (637)
+++++++. |+ . .+-|+|.+.|.+.++.+.+.|+..|-+.-+=.. .+.. +...|..|..+|..+..+.+..
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~g~~sL~el~ali~~a 252 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALLPGELRNLAGETSLDEAVDLIALA 252 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhCCcccccCCCCCCHHHHHHHHHhC
Confidence 46666655 33 3 456679999999999998888776655322110 0000 1234666777778888887777
Q ss_pred CCEEEEecCc
Q 006635 110 GLYAHLRIGP 119 (637)
Q Consensus 110 GL~vilr~GP 119 (637)
.|+|-...||
T Consensus 253 ~l~I~~DSGp 262 (334)
T TIGR02195 253 KAVVTNDSGL 262 (334)
T ss_pred CEEEeeCCHH
Confidence 7777766665
No 236
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=26.03 E-value=1.1e+02 Score=31.67 Aligned_cols=55 Identities=16% Similarity=0.080 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCcCCCCCcee-e--ec-CcccHHHHHHHHHHcCCEEEEec
Q 006635 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHY-N--FE-GSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 59 ~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~y-d--F~-g~~dL~~fl~la~~~GL~vilr~ 117 (637)
..++.++.++++|.++|.+.- .+...+.- + +. -...|.++.++|+++|+.+.|.+
T Consensus 95 ~~~~~i~~a~~lG~~~v~~~~----~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 95 IMEKAIQLARDLGIRTIQLAG----YDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHhCCCEEEecC----cccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 467789999999999997531 11111100 0 11 01357788899999999999985
No 237
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=25.95 E-value=1.4e+02 Score=31.30 Aligned_cols=66 Identities=14% Similarity=0.111 Sum_probs=47.4
Q ss_pred CCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHH-HcCCEEEEecC
Q 006635 53 PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQ-RVGLYAHLRIG 118 (637)
Q Consensus 53 ~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~-~~GL~vilr~G 118 (637)
.+.+.++=.+..+.+-++|++.|+...+-...+...|..-|.....+.++.++.+ +.-+-+++|++
T Consensus 15 ~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (266)
T cd07944 15 WDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYG 81 (266)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCC
Confidence 3568888889999999999999999888776555666666664445555555543 44555667765
No 238
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=25.55 E-value=59 Score=26.82 Aligned_cols=12 Identities=42% Similarity=0.825 Sum_probs=11.1
Q ss_pred EEECCEEEEEEE
Q 006635 507 VFINGQFLGSAF 518 (637)
Q Consensus 507 VfVNG~~iGs~~ 518 (637)
|||||..+|.+.
T Consensus 1 VFlNG~~iG~~~ 12 (63)
T PF04566_consen 1 VFLNGVWIGIHS 12 (63)
T ss_dssp EEETTEEEEEES
T ss_pred CEECCEEEEEEc
Confidence 799999999986
No 239
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) have been found in Bacteroides fragilis. in Butyrivibrio fibrisolvens. It is a hexamer of identical chains and in some protozoa. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006807 nitrogen compound metabolic process; PDB: 2J9I_E 3ZXV_D 1HTQ_D 1HTO_F 2BVC_F 2WGS_G 3ZXR_B 2WHI_D 3NG0_A 1LGR_C ....
Probab=25.46 E-value=1.3e+02 Score=31.30 Aligned_cols=61 Identities=21% Similarity=0.445 Sum_probs=43.2
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCc-----c---c---HHHHH-HHHHHcCCEEEEecCcee
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS-----Y---D---LVRFI-KTVQRVGLYAHLRIGPYV 121 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~-----~---d---L~~fl-~la~~~GL~vilr~GPyi 121 (637)
..+..++.++.+.++|+++-.. .||-.||||-+.=. . + ++..+ ++|+++||.+..-|=|+.
T Consensus 67 ~~~~~~~i~~~l~~~Gi~ve~~-----h~E~gpgQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~atFmpKP~~ 139 (259)
T PF00120_consen 67 GEDFLEEIVDALEQAGIPVEQI-----HHEVGPGQYEINLGPCDPLEAADNLVLFKEIIKEVARKHGLTATFMPKPFS 139 (259)
T ss_dssp THHHHHHHHHHHHHCT--EEEE-----EEESSTTEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEEE-SSSSST
T ss_pred HHHHHHHHHHHHHHhhcccccc-----ccccchHhhccccccCcHHHHHHHHHHHHHHHHHHHHHcCCceeeeccccC
Confidence 4566788999999999999988 89999999976421 1 1 12222 347899999999988764
No 240
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=25.40 E-value=4.3e+02 Score=29.58 Aligned_cols=85 Identities=14% Similarity=0.135 Sum_probs=47.9
Q ss_pred EeEEEEEEeeCCCCCHhH----HHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEec
Q 006635 42 RRILISGSIHYPRSTPEM----WEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 42 ~~~l~sG~~Hy~r~~~~~----W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
..++++|.+.-...|+.. ..+.++++++.++. +|+...=|.... .+....++.++.|++|+-.+
T Consensus 41 D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~---v~~I~GNHD~~~---------~l~~~~~~l~~~gi~vl~~~ 108 (407)
T PRK10966 41 DAIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQ---LVVLAGNHDSVA---------TLNESRDLLAFLNTTVIASA 108 (407)
T ss_pred CEEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCc---EEEEcCCCCChh---------hhhhHHHHHHHCCcEEEecc
Confidence 457788888644444433 34556777877754 454455555322 24555677789999987543
Q ss_pred ------CceeeeecCCCCCCcccccCCC
Q 006635 118 ------GPYVCAEWNFGGFPVWLKYVPG 139 (637)
Q Consensus 118 ------GPyi~aEw~~GG~P~WL~~~p~ 139 (637)
.|... +-..|...+|+.-.|-
T Consensus 109 ~~~~~~~~v~l-~~~~g~~~~~i~~lPy 135 (407)
T PRK10966 109 SDDLGHQVIIL-PRRDGTPGAVLCAIPF 135 (407)
T ss_pred cccCCcceEEE-ecCCCCeeeEEEECCC
Confidence 22221 2234445566655553
No 241
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=25.22 E-value=3.1e+02 Score=29.16 Aligned_cols=116 Identities=21% Similarity=0.280 Sum_probs=68.6
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecC---cccHHHHHHHHHHcCCEEEEecCceeeeecCCCCCC
Q 006635 55 STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEG---SYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFP 131 (637)
Q Consensus 55 ~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g---~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~GG~P 131 (637)
.+-+.-++-+.-+.+.|+.-|-+=.-|...+ ....+||+. ..||.++++-|++.|..|+|+. +.+ .||-.
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~-~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~----~~~--~~~~~ 101 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYGWE-KDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWY----HSE--TGGNV 101 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCGS---TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEE----ECC--HTTBH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecccccccc-ccccccccccCCccCHHHHHHHHHHcCCCEEEEE----eCC--cchhh
Confidence 3667788999999999999999977787622 234566663 4699999999999999998874 222 22211
Q ss_pred ccccc-------------CCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceE
Q 006635 132 VWLKY-------------VPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPII 178 (637)
Q Consensus 132 ~WL~~-------------~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII 178 (637)
.=|.+ +.++++=--+. --+.+-+|+.+|++.-++++|+..=.|++.
T Consensus 102 ~~~~~~~~~~f~~~~~~Gv~GvKidF~~~-d~Q~~v~~y~~i~~~AA~~~LmvnfHg~~k 160 (273)
T PF10566_consen 102 ANLEKQLDEAFKLYAKWGVKGVKIDFMDR-DDQEMVNWYEDILEDAAEYKLMVNFHGATK 160 (273)
T ss_dssp HHHHCCHHHHHHHHHHCTEEEEEEE--SS-TSHHHHHHHHHHHHHHHHTT-EEEETTS--
T ss_pred HhHHHHHHHHHHHHHHcCCCEEeeCcCCC-CCHHHHHHHHHHHHHHHHcCcEEEecCCcC
Confidence 10111 22333210010 125577899999999999988665555544
No 242
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=25.19 E-value=1e+03 Score=26.74 Aligned_cols=86 Identities=12% Similarity=0.215 Sum_probs=49.8
Q ss_pred HHHcCCEEEEecCceeeeecCCCCCCcccccCCCe------eeecC-ChhhHHHHHHHHHHHHHHHHhccccccCCCceE
Q 006635 106 VQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGI------SFRTD-NGPFKVAMQGFTQKIVQMMKNEKLFASQGGPII 178 (637)
Q Consensus 106 a~~~GL~vilr~GPyi~aEw~~GG~P~WL~~~p~i------~~Rt~-~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII 178 (637)
+-..|+.|+.-| |+ .|+|++..-.+ ++|-+ .+.|- .++...+..++ .+|=|+-
T Consensus 111 ~in~g~ivfASP-------Ws---pPa~Mktt~~~ngg~~g~Lk~e~Ya~yA----~~l~~fv~~m~------~nGvnly 170 (433)
T COG5520 111 AINPGMIVFASP-------WS---PPASMKTTNNRNGGNAGRLKYEKYADYA----DYLNDFVLEMK------NNGVNLY 170 (433)
T ss_pred hcCCCcEEEecC-------CC---CchhhhhccCcCCccccccchhHhHHHH----HHHHHHHHHHH------hCCCcee
Confidence 667899998887 64 79999763211 22211 23332 33333344455 3566888
Q ss_pred EccccccccCCccccCc---ccHHHHHHHHHHHhcCC
Q 006635 179 LSQIENEYGPESKSLGA---AGHAYVNWAAKMAVGLD 212 (637)
Q Consensus 179 ~~QIENEyg~~~~~~~~---~~~~y~~~l~~~~~~~g 212 (637)
++-+.||..... .|.. ...+.++.+++-+....
T Consensus 171 alSVQNEPd~~p-~~d~~~wtpQe~~rF~~qyl~si~ 206 (433)
T COG5520 171 ALSVQNEPDYAP-TYDWCWWTPQEELRFMRQYLASIN 206 (433)
T ss_pred EEeeccCCcccC-CCCcccccHHHHHHHHHHhhhhhc
Confidence 888889986432 2322 24556666666665554
No 243
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=25.13 E-value=1.5e+02 Score=31.76 Aligned_cols=65 Identities=11% Similarity=0.226 Sum_probs=45.7
Q ss_pred CCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCC-------------CCceeeecCcccHHHHHHHHHHcCCEEEEecC
Q 006635 52 YPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-------------SPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (637)
Q Consensus 52 y~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp-------------~~G~ydF~g~~dL~~fl~la~~~GL~vilr~G 118 (637)
.-|+|++.|.+.++.+++.|+.+| +++.-.|. .+...|..|..+|..+..+.+...++|--..|
T Consensus 196 ~K~Wp~e~fa~l~~~L~~~~~~vv---l~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l~v~nDSG 272 (352)
T PRK10422 196 FKCWDNDKFSAVIDALQARGYEVV---LTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALIDHAQLFIGVDSA 272 (352)
T ss_pred ccCCCHHHHHHHHHHHHHCCCeEE---EEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHhCCEEEecCCH
Confidence 345699999999999988887655 44443321 12346777777888888888887777776666
Q ss_pred c
Q 006635 119 P 119 (637)
Q Consensus 119 P 119 (637)
|
T Consensus 273 p 273 (352)
T PRK10422 273 P 273 (352)
T ss_pred H
Confidence 5
No 244
>PRK06703 flavodoxin; Provisional
Probab=25.08 E-value=3.1e+02 Score=25.62 Aligned_cols=103 Identities=13% Similarity=0.069 Sum_probs=59.0
Q ss_pred ECCEEeEEEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEec
Q 006635 38 INGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 38 idG~~~~l~sG~~Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
+..-..++++-..+-.-.+|..+.+.+..+++.-++.....+|-...-. |.. .....+.+-+..++.|..++.++
T Consensus 46 l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~g~~~----y~~-~~~a~~~l~~~l~~~G~~~~~~~ 120 (151)
T PRK06703 46 LLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGSGDTA----YPL-FCEAVTIFEERLVERGAELVQEG 120 (151)
T ss_pred HhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEccCCCC----hHH-HHHHHHHHHHHHHHCCCEEcccC
Confidence 3344555665544433335566777788887666665555566221110 110 12345667788899999877664
Q ss_pred CceeeeecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHH
Q 006635 118 GPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (637)
Q Consensus 118 GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~ 165 (637)
+- +....++..-++.++.|.++|++.++
T Consensus 121 ---~~-----------------~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 121 ---LK-----------------IELAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred ---eE-----------------EecCCCchhHHHHHHHHHHHHHHHHH
Confidence 10 01111224567888899999887776
No 245
>smart00606 CBD_IV Cellulose Binding Domain Type IV.
Probab=24.89 E-value=5.1e+02 Score=23.28 Aligned_cols=51 Identities=24% Similarity=0.388 Sum_probs=32.3
Q ss_pred ccEEEEccC--ccEEEEEEC---CEEEEEEEC----Cccccee-EEEeeEEeeccccEEEEEE
Q 006635 493 KPTLTVESA--GHAVHVFIN---GQFLGSAFG----TRENRRF-TFSGPANLRAGINKIALLS 545 (637)
Q Consensus 493 ~~~L~v~s~--~h~~~VfVN---G~~iGs~~g----~~~~~~f-~f~~~i~L~~G~N~IslLs 545 (637)
+..+++.+. +..+.|++| |+.+++..= +++. + ++..+|.+..|.|.|.+..
T Consensus 56 ~i~~~~as~~~~~~i~v~~d~~~G~~~~~~~~p~tg~~~~--~~~~~~~v~~~~G~~~l~~~~ 116 (129)
T smart00606 56 TFTARVASGNAGGSIELRLDSPTGTLVGTVDVPSTGGWQT--YQTVSATVTLPAGVHDVYLVF 116 (129)
T ss_pred EEEEEEeCCCCCceEEEEECCCCCcEEEEEEeCCCCCCcc--CEEEEEEEccCCceEEEEEEE
Confidence 356666553 347889988 688887652 2222 3 3555666777888887654
No 246
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=24.88 E-value=78 Score=32.98 Aligned_cols=48 Identities=29% Similarity=0.569 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEE-EecCceeee
Q 006635 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH-LRIGPYVCA 123 (637)
Q Consensus 58 ~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vi-lr~GPyi~a 123 (637)
+.-.+.++++|+.|+ -|+.+| +|.+ .-++.|++.|-..| |-+|||..+
T Consensus 113 ~~l~~~i~~L~~~gI-rVSLFi-----dP~~------------~qi~~A~~~GAd~VELhTG~yA~a 161 (239)
T PRK05265 113 DKLKPAIARLKDAGI-RVSLFI-----DPDP------------EQIEAAAEVGADRIELHTGPYADA 161 (239)
T ss_pred HHHHHHHHHHHHCCC-EEEEEe-----CCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 445667888888888 556543 5554 34788888888866 889999865
No 247
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=24.87 E-value=2.1e+02 Score=33.58 Aligned_cols=45 Identities=29% Similarity=0.341 Sum_probs=32.5
Q ss_pred ccEEEEEECCEEEEEEECCccc---ceeEEEeeEEeeccccEEEEEEe
Q 006635 502 GHAVHVFINGQFLGSAFGTREN---RRFTFSGPANLRAGINKIALLSI 546 (637)
Q Consensus 502 ~h~~~VfVNG~~iGs~~g~~~~---~~f~f~~~i~L~~G~N~IslLs~ 546 (637)
.-.+.|+|||+.+|+..=...+ ..++++.|..|..|.|+|+|-..
T Consensus 62 ~S~L~V~lNg~~v~s~~l~~~~~~~~~~~i~Ip~~l~~g~N~l~~~~~ 109 (605)
T PF03170_consen 62 RSQLTVSLNGQPVGSIPLDAESAQPQTVTIPIPPALIKGFNRLTFEFI 109 (605)
T ss_pred cceEEEEECCEEeEEEecCcCCCCceEEEEecChhhcCCceEEEEEEE
Confidence 3579999999999998733222 24556666578889999987543
No 248
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=24.11 E-value=2.1e+02 Score=32.32 Aligned_cols=59 Identities=14% Similarity=0.101 Sum_probs=45.5
Q ss_pred CCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEe
Q 006635 54 RSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (637)
Q Consensus 54 r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr 116 (637)
...++..++.++.+++.|.++=-+|+- |-|.|.=-.|+=+ .+.+++++|+++++++|..
T Consensus 172 ~~~~~~le~~~~~~~~~~~~~k~v~l~-nP~NPTG~~~s~e---~l~~ll~~a~~~~~~iI~D 230 (468)
T PLN02450 172 QITESALEEAYQQAQKLNLKVKGVLIT-NPSNPLGTTTTRT---ELNLLVDFITAKNIHLISD 230 (468)
T ss_pred cCCHHHHHHHHHHHHhcCCCeeEEEEe-cCCCCCCcccCHH---HHHHHHHHHHHCCcEEEEE
Confidence 445666777777776667766556777 7888887777665 7999999999999999866
No 249
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=24.07 E-value=1.6e+02 Score=29.25 Aligned_cols=82 Identities=20% Similarity=0.187 Sum_probs=54.3
Q ss_pred EeEEEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCC--CceeeecCcccHHHHHHHHHHcCCEEEEecCc
Q 006635 42 RRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPS--PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (637)
Q Consensus 42 ~~~l~sG~~Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~--~G~ydF~g~~dL~~fl~la~~~GL~vilr~GP 119 (637)
++++++|+.+....+...=+..++.+++.|..+....+. . ..+. .+ .++ +.-++.++++..++++-.|+.-|
T Consensus 2 kIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~-~-l~~~~~~~-~~~-~~~~~~~~~~~i~~AD~iIi~tP-- 75 (191)
T PRK10569 2 RVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQ-N-FAPEDLLY-ARF-DSPALKTFTEQLAQADGLIVATP-- 75 (191)
T ss_pred EEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEcc-C-CChHHHHh-ccC-CCHHHHHHHHHHHHCCEEEEECC--
Confidence 478889998876667777788888889899776654332 1 1110 11 011 12389999999999999888776
Q ss_pred eeeeecCCCCCCccc
Q 006635 120 YVCAEWNFGGFPVWL 134 (637)
Q Consensus 120 yi~aEw~~GG~P~WL 134 (637)
|| +|++|.-|
T Consensus 76 ----~Y-~~s~pg~L 85 (191)
T PRK10569 76 ----VY-KASFSGAL 85 (191)
T ss_pred ----cc-CCCCCHHH
Confidence 55 44555443
No 250
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=23.91 E-value=85 Score=34.82 Aligned_cols=66 Identities=21% Similarity=0.270 Sum_probs=45.8
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEccc--CCcCCCCCceeeecCcccHHHHHHHHHHcCCEE-EEecCceeeeecCCCCCC
Q 006635 55 STPEMWEDLIRKAKDGGLDVIDTYVF--WNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA-HLRIGPYVCAEWNFGGFP 131 (637)
Q Consensus 55 ~~~~~W~~~l~k~K~~G~N~I~~yvf--Wn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~v-ilr~GPyi~aEw~~GG~P 131 (637)
.+++.+++.++.+|+.|++.+-..++ .+...+.. |.= .-.+.+++++++.+.|+.+ +|.+| ||||
T Consensus 147 i~~~~~~~~l~~~~~~~l~~~Gih~HiGS~~~~~~~--~~~-a~~~~~~~~~~~~~~g~~l~~ldiG---------GGf~ 214 (394)
T cd06831 147 TTLKNCRHLLECAKELDVQIVGVKFHVSSSCKEYQT--YVH-ALSDARCVFDMAEEFGFKMNMLDIG---------GGFT 214 (394)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEEEECCCCCCCHHH--HHH-HHHHHHHHHHHHHHCCCCCCEEEeC---------CCcC
Confidence 58899999999999999998776554 44443332 210 0113466888898888864 68886 8997
Q ss_pred c
Q 006635 132 V 132 (637)
Q Consensus 132 ~ 132 (637)
.
T Consensus 215 ~ 215 (394)
T cd06831 215 G 215 (394)
T ss_pred C
Confidence 3
No 251
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=23.80 E-value=1.3e+02 Score=31.65 Aligned_cols=57 Identities=19% Similarity=0.349 Sum_probs=40.7
Q ss_pred EEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEec
Q 006635 45 LISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 45 l~sG~~Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
-+++-.++.|.. .++++.+.+.|++.|++.+..+ +++ .+.+.++.|+++|+.|.+-+
T Consensus 73 ~~~~~~~~~~~~----~~~l~~a~~~gv~~iri~~~~~---------~~~---~~~~~i~~ak~~G~~v~~~~ 129 (266)
T cd07944 73 KIAVMVDYGNDD----IDLLEPASGSVVDMIRVAFHKH---------EFD---EALPLIKAIKEKGYEVFFNL 129 (266)
T ss_pred EEEEEECCCCCC----HHHHHHHhcCCcCEEEEecccc---------cHH---HHHHHHHHHHHCCCeEEEEE
Confidence 344445555533 3568888999999999987544 333 68889999999999877554
No 252
>PRK09919 anti-adapter protein IraM; Provisional
Probab=23.44 E-value=1.4e+02 Score=27.67 Aligned_cols=27 Identities=22% Similarity=0.619 Sum_probs=18.5
Q ss_pred ceeeccchhhhcccCCccceEEEEEEEEecCCc
Q 006635 453 TLTAIGLLEQINITRDTSDYLWYMTSVEISSSE 485 (637)
Q Consensus 453 ~~~~~~~lEq~~~TkD~sdYlWY~t~v~v~~~~ 485 (637)
+|...-.++-+.+. |||+..+.++..+
T Consensus 17 ~FS~i~~~~nlKli------lWY~~d~~L~pG~ 43 (114)
T PRK09919 17 SFSAISSLRNLKLI------LWYQADIFLPPGS 43 (114)
T ss_pred chhhhhhhhcceEE------EEEeeeEEeCCCC
Confidence 34444445555554 9999999998765
No 253
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=23.27 E-value=1.3e+02 Score=35.85 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=37.6
Q ss_pred HHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEecC
Q 006635 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (637)
Q Consensus 64 l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~G 118 (637)
.+++|++|++.|-+ .|..++..|.=+ +..+.+=++.|.++||.+|+++|
T Consensus 474 a~mLkd~G~~~vii-----GHSERR~~f~Et-d~~V~~K~~~al~~GL~pIvCVG 522 (645)
T PRK13962 474 GPMLAEIGVEYVII-----GHSERRQYFGET-DELVNKKVLAALKAGLTPILCVG 522 (645)
T ss_pred HHHHHHcCCCEEEE-----CcccccCCcCcc-hHHHHHHHHHHHHCCCEEEEEcC
Confidence 45789999999999 787777666533 23444445899999999999987
No 254
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=23.20 E-value=3.8e+02 Score=24.43 Aligned_cols=67 Identities=16% Similarity=0.170 Sum_probs=46.6
Q ss_pred ECCEEeEEEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEec
Q 006635 38 INGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 38 idG~~~~l~sG~~Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
+.|.-+++-+|. +.....++...+.++.+.+.|+-.+-+.+-= .....| +.++++|.+++|-++.-|
T Consensus 40 l~~gElvlttg~-~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~-~~~~iP-----------~~~i~~A~~~~lPli~ip 106 (123)
T PF07905_consen 40 LRGGELVLTTGY-ALRDDDEEELREFIRELAEKGAAGLGIKTGR-YLDEIP-----------EEIIELADELGLPLIEIP 106 (123)
T ss_pred CCCCeEEEECCc-ccCCCCHHHHHHHHHHHHHCCCeEEEEeccC-ccccCC-----------HHHHHHHHHcCCCEEEeC
Confidence 555555555553 3334466788999999999999988874421 111233 788999999999988765
No 255
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=23.15 E-value=8.5e+02 Score=26.20 Aligned_cols=120 Identities=13% Similarity=0.073 Sum_probs=79.4
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCcccc
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~WL~ 135 (637)
..+.-+.+|+.+|.-+. .|++|- +.-+-|..++.++.+.|++|+|.+ |+.
T Consensus 61 Sa~~~~sDLe~l~~~t~-~IR~Y~--------------sDCn~le~v~pAa~~~g~kv~lGi---------------w~t 110 (305)
T COG5309 61 SADQVASDLELLASYTH-SIRTYG--------------SDCNTLENVLPAAEASGFKVFLGI---------------WPT 110 (305)
T ss_pred CHHHHHhHHHHhccCCc-eEEEee--------------ccchhhhhhHHHHHhcCceEEEEE---------------eec
Confidence 56778899999999888 999972 122368888999999999999875 322
Q ss_pred cCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEccccccccCCccccCcccHHHHHHHHHHHhcCCCCc
Q 006635 136 YVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGV 215 (637)
Q Consensus 136 ~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~v 215 (637)
+++ . ..+++ .|..++. +. ..=-.|-.+-|.||-=.-.+.-...--+|+.-.+...++.|.++
T Consensus 111 --dd~-------~--~~~~~---til~ay~--~~--~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~g 172 (305)
T COG5309 111 --DDI-------H--DAVEK---TILSAYL--PY--NGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDG 172 (305)
T ss_pred --cch-------h--hhHHH---HHHHHHh--cc--CCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 221 1 12222 3333333 21 11136788889999632211111245689999999999999999
Q ss_pred ceeeecCC
Q 006635 216 PWVMCKED 223 (637)
Q Consensus 216 P~~~~~~~ 223 (637)
|..+.++.
T Consensus 173 pV~T~dsw 180 (305)
T COG5309 173 PVTTVDSW 180 (305)
T ss_pred ceeecccc
Confidence 98876653
No 256
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=23.02 E-value=2.4e+02 Score=28.64 Aligned_cols=91 Identities=11% Similarity=0.129 Sum_probs=64.0
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeec-CcccHHHHHHHHHHcCCEEEEecCceeeeecCCCCCCccc
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFE-GSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWL 134 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~-g~~dL~~fl~la~~~GL~vilr~GPyi~aEw~~GG~P~WL 134 (637)
.+..++..++.++++|+.++.+|..... ....+..+ |..|=..-+++|++.|+ -+| -|-++
T Consensus 50 ~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~----p~g-----------s~IYf 111 (212)
T cd06418 50 SKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGF----PPG-----------TIIYF 111 (212)
T ss_pred CCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCC----CCC-----------CEEEE
Confidence 5677889999999999999999988765 22233333 66788999999999998 233 23333
Q ss_pred ccCCCeeeecCChhhHHHHHHHHHHHHHHHHhcc
Q 006635 135 KYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEK 168 (637)
Q Consensus 135 ~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~ 168 (637)
.-+.+. .+..+...+..|++.+.+.|+...
T Consensus 112 avD~d~----~~~~~~~~v~~Y~~a~~~~l~~~g 141 (212)
T cd06418 112 AVDFDA----LDDEVTEVILPYFRGWNDALHEAG 141 (212)
T ss_pred EeecCC----CcchhHHHHHHHHHHHHHHHHhcC
Confidence 222221 223377888999999999998543
No 257
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=22.92 E-value=1.6e+02 Score=31.11 Aligned_cols=45 Identities=18% Similarity=0.210 Sum_probs=34.8
Q ss_pred HHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEecCc
Q 006635 61 EDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (637)
Q Consensus 61 ~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~GP 119 (637)
++-+++++++|++.|-+. -+|-+ ...+|++.|+++||..|+-+.|
T Consensus 109 e~F~~~~~~aGvdgviip-----DLP~e---------e~~~~~~~~~~~gi~~I~lv~P 153 (263)
T CHL00200 109 NKFIKKISQAGVKGLIIP-----DLPYE---------ESDYLISVCNLYNIELILLIAP 153 (263)
T ss_pred HHHHHHHHHcCCeEEEec-----CCCHH---------HHHHHHHHHHHcCCCEEEEECC
Confidence 567899999999999983 33422 4689999999999988766543
No 258
>PLN02284 glutamine synthetase
Probab=22.89 E-value=2.8e+02 Score=30.44 Aligned_cols=61 Identities=16% Similarity=0.338 Sum_probs=43.6
Q ss_pred HHHHHHCCCCEEEEcccCCcCCCCCceeeecCc-cc----------HHHHHH-HHHHcCCEEEEecCceeeeecCCCCC
Q 006635 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS-YD----------LVRFIK-TVQRVGLYAHLRIGPYVCAEWNFGGF 130 (637)
Q Consensus 64 l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~-~d----------L~~fl~-la~~~GL~vilr~GPyi~aEw~~GG~ 130 (637)
.+.+.++|+++-.+ +||-.||||-+.=. .| ++..++ +|+++|+.+-.-|=|+. ++|+.-|+
T Consensus 176 ~~~l~~~Gi~ve~~-----h~E~apGQ~Ei~l~~~d~l~aAD~~~~~K~vvk~vA~~~Gl~ATFMPKP~~-~~~~GSGm 248 (354)
T PLN02284 176 YKACLYAGINISGI-----NGEVMPGQWEFQVGPVVGISAGDQLWVARYILERITEIAGVVVSFDPKPIP-GDWNGAGA 248 (354)
T ss_pred HHHHHHCCCCeEEE-----EcCcCCCceEEEecCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCCCC-CCCccCcc
Confidence 44459999999998 89999999977521 11 233343 68899999999988853 45655554
No 259
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=22.77 E-value=1.1e+02 Score=34.28 Aligned_cols=79 Identities=20% Similarity=0.363 Sum_probs=59.1
Q ss_pred ceeEEEc--cCcEEECCEEeEEEEEEeeCCCC-CHhHHHHHHHHHHHCC--CCEEEEcccCCcCCCCCceeeecCc-ccH
Q 006635 26 CSTVTYD--RKAILINGQRRILISGSIHYPRS-TPEMWEDLIRKAKDGG--LDVIDTYVFWNGHEPSPGHYNFEGS-YDL 99 (637)
Q Consensus 26 ~~~v~~d--~~~l~idG~~~~l~sG~~Hy~r~-~~~~W~~~l~k~K~~G--~N~I~~yvfWn~hEp~~G~ydF~g~-~dL 99 (637)
..-|-.| ++.=++||-+ +-.++.+.++- +.+.-++.|++.++.| -..|-| +|.|-.+|. .+|
T Consensus 123 ~dli~~D~lnHASiidG~r--ls~a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~Ivt----------egVfSMdGdiApL 190 (388)
T COG0156 123 GDLIFSDELNHASIIDGIR--LSRAEVRRFKHNDLDHLEALLEEARENGARRKLIVT----------EGVFSMDGDIAPL 190 (388)
T ss_pred CcEEEEechhhhhHHHHHH--hCCCcEEEecCCCHHHHHHHHHhhhccCCCceEEEE----------eccccCCCCcCCH
Confidence 3444444 2333778877 56667776665 7788888888877554 456655 899999998 799
Q ss_pred HHHHHHHHHcCCEEEEe
Q 006635 100 VRFIKTVQRVGLYAHLR 116 (637)
Q Consensus 100 ~~fl~la~~~GL~vilr 116 (637)
.+++++|+++|.++++.
T Consensus 191 ~~l~~L~~ky~a~L~VD 207 (388)
T COG0156 191 PELVELAEKYGALLYVD 207 (388)
T ss_pred HHHHHHHHHhCcEEEEE
Confidence 99999999999988877
No 260
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=22.76 E-value=5.3e+02 Score=26.36 Aligned_cols=80 Identities=19% Similarity=0.186 Sum_probs=57.9
Q ss_pred CcEEECCEEeEEEEEEeeCCCC---C----------------------HhHHHHHHHHHHHCCCCEEEEcccCCc-CCCC
Q 006635 34 KAILINGQRRILISGSIHYPRS---T----------------------PEMWEDLIRKAKDGGLDVIDTYVFWNG-HEPS 87 (637)
Q Consensus 34 ~~l~idG~~~~l~sG~~Hy~r~---~----------------------~~~W~~~l~k~K~~G~N~I~~yvfWn~-hEp~ 87 (637)
.-+.++|.++-+++........ . .+.-.+.++++| .+.+.|=.++.|.. .+..
T Consensus 122 ~i~~~~g~kia~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~r-~~~D~vIv~~HwG~e~~~~ 200 (250)
T PF09587_consen 122 AIIEVNGVKIAFLGYTDGENGYSSANGNRPYGFSYRPDKAGLNPNRPGIERIKEDIREAR-KKADVVIVSLHWGIEYENY 200 (250)
T ss_pred EEEEECCEEEEEEEEEcCCCCCccccccccccccccccccccccccchHHHHHHHHHHHh-cCCCEEEEEeccCCCCCCC
Confidence 3456789999999888764221 0 155677888899 78999999999962 2223
Q ss_pred CceeeecCcccHHHHHHHHHHcCCEEEEecCcee
Q 006635 88 PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYV 121 (637)
Q Consensus 88 ~G~ydF~g~~dL~~fl~la~~~GL~vilr~GPyi 121 (637)
| ..+.+++.+.+-++|..+|+.=+|-+
T Consensus 201 p-------~~~q~~~a~~lidaGaDiIiG~HpHv 227 (250)
T PF09587_consen 201 P-------TPEQRELARALIDAGADIIIGHHPHV 227 (250)
T ss_pred C-------CHHHHHHHHHHHHcCCCEEEeCCCCc
Confidence 3 22568888888889999999877754
No 261
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=22.72 E-value=1.6e+02 Score=27.98 Aligned_cols=82 Identities=15% Similarity=0.263 Sum_probs=45.3
Q ss_pred CEEeEEEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEEccc-CCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEecC
Q 006635 40 GQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVF-WNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (637)
Q Consensus 40 G~~~~l~sG~~Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvf-Wn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~G 118 (637)
++|.+++ +|-.-.....|+..++.++ .|+++|..=.. ....+..+..|+++. ..+.+.+++++.+..-+.-.|
T Consensus 12 ~~~~li~---~hg~~~~~~~~~~~~~~l~-~~~~v~~~d~~G~G~s~~~~~~~~~~~--~~~~~~~~i~~~~~~~v~liG 85 (251)
T TIGR02427 12 GAPVLVF---INSLGTDLRMWDPVLPALT-PDFRVLRYDKRGHGLSDAPEGPYSIED--LADDVLALLDHLGIERAVFCG 85 (251)
T ss_pred CCCeEEE---EcCcccchhhHHHHHHHhh-cccEEEEecCCCCCCCCCCCCCCCHHH--HHHHHHHHHHHhCCCceEEEE
Confidence 5676666 4666677888988888886 47877765332 333333334555552 233344445555543121222
Q ss_pred ceeeeecCCCCCCcc
Q 006635 119 PYVCAEWNFGGFPVW 133 (637)
Q Consensus 119 Pyi~aEw~~GG~P~W 133 (637)
+..||.=++
T Consensus 86 ------~S~Gg~~a~ 94 (251)
T TIGR02427 86 ------LSLGGLIAQ 94 (251)
T ss_pred ------eCchHHHHH
Confidence 567776544
No 262
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=22.72 E-value=1e+02 Score=32.14 Aligned_cols=48 Identities=31% Similarity=0.537 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEE-EecCceeee
Q 006635 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH-LRIGPYVCA 123 (637)
Q Consensus 58 ~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vi-lr~GPyi~a 123 (637)
+.-.+.++++|+.|+- |+. +.+|.+ +-++.|++.|-..| |-+|||..+
T Consensus 110 ~~l~~~i~~l~~~gI~-VSL-----FiDPd~------------~qi~~A~~~GAd~VELhTG~Ya~a 158 (234)
T cd00003 110 EKLKPIIERLKDAGIR-VSL-----FIDPDP------------EQIEAAKEVGADRVELHTGPYANA 158 (234)
T ss_pred HHHHHHHHHHHHCCCE-EEE-----EeCCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 4456778888888884 665 355554 34788888888866 889988754
No 263
>PRK09739 hypothetical protein; Provisional
Probab=22.71 E-value=2.4e+02 Score=27.88 Aligned_cols=76 Identities=12% Similarity=0.124 Sum_probs=47.3
Q ss_pred EEeEEEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCc-CCCCCceee---ec-----CcccHHHHHHHHHHcCC
Q 006635 41 QRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNG-HEPSPGHYN---FE-----GSYDLVRFIKTVQRVGL 111 (637)
Q Consensus 41 ~~~~l~sG~~Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~-hEp~~G~yd---F~-----g~~dL~~fl~la~~~GL 111 (637)
.+++++.|+.+..+.+...=+..++.+++.|.++... -.... ..|.-+.-+ |. -..++++.++...+++.
T Consensus 4 mkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~-dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~ 82 (199)
T PRK09739 4 MRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEEL-DLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEHDA 82 (199)
T ss_pred ceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEE-EhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhCCE
Confidence 4678888887765557777777888889888543322 22221 112211111 11 12478999999999999
Q ss_pred EEEEec
Q 006635 112 YAHLRI 117 (637)
Q Consensus 112 ~vilr~ 117 (637)
.|+.-|
T Consensus 83 iV~~~P 88 (199)
T PRK09739 83 LVFVFP 88 (199)
T ss_pred EEEECc
Confidence 888665
No 264
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=22.62 E-value=1.1e+03 Score=26.52 Aligned_cols=79 Identities=13% Similarity=0.129 Sum_probs=50.5
Q ss_pred HHHHHHHHHCCCCEEEEccc----CCcCCCCCceeeecCcccHHHHHHHHHHcCCEE--EEecCceeeeecCCCCCCccc
Q 006635 61 EDLIRKAKDGGLDVIDTYVF----WNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA--HLRIGPYVCAEWNFGGFPVWL 134 (637)
Q Consensus 61 ~~~l~k~K~~G~N~I~~yvf----Wn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~v--ilr~GPyi~aEw~~GG~P~WL 134 (637)
...++.+.+.|.|++++++- |..-...+ .++.+|.++|+++||.+ ++-=+||.
T Consensus 144 ~~a~~~a~~~g~~afqiF~~npr~w~~~~~~~--------~~~~~f~~~~~~~gi~~~~i~~HapYl------------- 202 (413)
T PTZ00372 144 DNSPINAYNIAGQAFALFLKNQRTWNSPPLSD--------ETIDKFKENCKKYNYDPKFILPHGSYL------------- 202 (413)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCccCCCCCCCH--------HHHHHHHHHHHHcCCCcceEEeecCce-------------
Confidence 35788999999999999863 54443333 47999999999998852 33345553
Q ss_pred ccCCCeeeecCChhhHHHHHHHHHHHHHHHH
Q 006635 135 KYVPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (637)
Q Consensus 135 ~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~ 165 (637)
+-+-+.|+..++...+.+.+-++...
T Consensus 203 -----INLASpd~e~rekSv~~~~~eL~rA~ 228 (413)
T PTZ00372 203 -----INLANPDKEKREKSYDAFLDDLQRCE 228 (413)
T ss_pred -----ecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12223455555555555555455544
No 265
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=22.34 E-value=1.6e+02 Score=29.29 Aligned_cols=45 Identities=18% Similarity=0.363 Sum_probs=38.8
Q ss_pred HHHHHHHCCCCEEE-----EcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEe
Q 006635 63 LIRKAKDGGLDVID-----TYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (637)
Q Consensus 63 ~l~k~K~~G~N~I~-----~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr 116 (637)
..+.+++.|+.+|= |-|+|+.-+..| .+.+.++.++++|+.|++-
T Consensus 19 ~~~~L~~~Gikgvi~DlDNTLv~wd~~~~tp---------e~~~W~~e~k~~gi~v~vv 68 (175)
T COG2179 19 TPDILKAHGIKGVILDLDNTLVPWDNPDATP---------ELRAWLAELKEAGIKVVVV 68 (175)
T ss_pred CHHHHHHcCCcEEEEeccCceecccCCCCCH---------HHHHHHHHHHhcCCEEEEE
Confidence 35678999999886 678999999888 7999999999999998654
No 266
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=22.27 E-value=1.9e+02 Score=30.62 Aligned_cols=76 Identities=12% Similarity=0.190 Sum_probs=51.2
Q ss_pred EEeE-EEEEEeeC-CCCCHhHHHHHHHHHHHCCCCEEEEcccCCcC-CC--------CCceeeecCcccHHHHHHHHHHc
Q 006635 41 QRRI-LISGSIHY-PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGH-EP--------SPGHYNFEGSYDLVRFIKTVQRV 109 (637)
Q Consensus 41 ~~~~-l~sG~~Hy-~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~h-Ep--------~~G~ydF~g~~dL~~fl~la~~~ 109 (637)
++++ +..|.-+. -|+|.+.|.+.++.+.+-|+.+| +.+..- |. ....-+..|..+|..++.+.+..
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~iv---l~~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali~~a 254 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIK---LPWGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVLAGA 254 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEE---EeCCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHHHhC
Confidence 4444 34555454 45799999999999988887655 223211 11 01125677888899999998888
Q ss_pred CCEEEEecCc
Q 006635 110 GLYAHLRIGP 119 (637)
Q Consensus 110 GL~vilr~GP 119 (637)
.+.|--..||
T Consensus 255 ~l~I~nDSGp 264 (322)
T PRK10964 255 KAVVSVDTGL 264 (322)
T ss_pred CEEEecCCcH
Confidence 8888777776
No 267
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=22.17 E-value=1.6e+02 Score=30.35 Aligned_cols=60 Identities=15% Similarity=0.215 Sum_probs=39.3
Q ss_pred EEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEecCc
Q 006635 46 ISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (637)
Q Consensus 46 ~sG~~Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~GP 119 (637)
+.+-+-+....++.| +++++++|.+.|-+. --|- +.. .++.++++.|+++||.+++-..|
T Consensus 79 lM~y~n~~~~~~~~~---i~~~~~~Gadgvii~-----dlp~----e~~--~~~~~~~~~~~~~Gl~~~~~v~p 138 (244)
T PRK13125 79 LMTYLEDYVDSLDNF---LNMARDVGADGVLFP-----DLLI----DYP--DDLEKYVEIIKNKGLKPVFFTSP 138 (244)
T ss_pred EEEecchhhhCHHHH---HHHHHHcCCCEEEEC-----CCCC----CcH--HHHHHHHHHHHHcCCCEEEEECC
Confidence 333333334456655 788899999999982 0111 100 15789999999999998877643
No 268
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=21.91 E-value=1e+02 Score=34.41 Aligned_cols=66 Identities=15% Similarity=0.242 Sum_probs=52.5
Q ss_pred EEEeeCCC-CCHhHHHHHHHHHHHC-CCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEe
Q 006635 47 SGSIHYPR-STPEMWEDLIRKAKDG-GLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (637)
Q Consensus 47 sG~~Hy~r-~~~~~W~~~l~k~K~~-G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr 116 (637)
.=|+.|.- .|...|+-+|..+.++ -=||+.+-| =|=+.|--+.|+-. .|.+++++|+++|+.||-.
T Consensus 171 ~lEVR~ydlLPe~~weIDL~~veal~DENT~Aivv-iNP~NPcGnVys~~---HL~kiae~A~klgi~vIaD 238 (447)
T KOG0259|consen 171 GLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVV-INPNNPCGNVYSED---HLKKIAETAKKLGIMVIAD 238 (447)
T ss_pred CceeEeecccCcccceechHHHHHhhccCeeEEEE-eCCCCCCcccccHH---HHHHHHHHHHHhCCeEEeh
Confidence 33444433 5888899999999876 678888754 37788888898877 8999999999999999865
No 269
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=21.89 E-value=1.4e+02 Score=30.62 Aligned_cols=100 Identities=14% Similarity=0.271 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEE-EEecCce----------eeeecC
Q 006635 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA-HLRIGPY----------VCAEWN 126 (637)
Q Consensus 58 ~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~v-ilr~GPy----------i~aEw~ 126 (637)
+.|++.++.+|..|+-.+.--+-|.-.. .+ .|..+|.+|++.|+ .|.++ ++-+=+| |..=.+
T Consensus 90 ~~w~~~~~~~~~~~~~l~sPa~~~~~~~-~~-----~g~~Wl~~F~~~~~-~~~~~D~iavH~Y~~~~~~~~~~i~~~~~ 162 (239)
T PF11790_consen 90 ALWKQYMNPLRSPGVKLGSPAVAFTNGG-TP-----GGLDWLSQFLSACA-RGCRVDFIAVHWYGGDADDFKDYIDDLHN 162 (239)
T ss_pred HHHHHHHhHhhcCCcEEECCeecccCCC-CC-----CccHHHHHHHHhcc-cCCCccEEEEecCCcCHHHHHHHHHHHHH
Confidence 4499999998988888887766565443 12 23348999999999 44444 3444445 111112
Q ss_pred CCCCCcccccCCCeeee-cCChhhHHHHHHHHHHHHHHHHhc
Q 006635 127 FGGFPVWLKYVPGISFR-TDNGPFKVAMQGFTQKIVQMMKNE 167 (637)
Q Consensus 127 ~GG~P~WL~~~p~i~~R-t~~~~y~~~~~~~~~~i~~~l~~~ 167 (637)
.-|.|.|+.+.- .+ .....=.+.+..|++++++.|.+.
T Consensus 163 ~~~kPIWITEf~---~~~~~~~~~~~~~~~fl~~~~~~ld~~ 201 (239)
T PF11790_consen 163 RYGKPIWITEFG---CWNGGSQGSDEQQASFLRQALPWLDSQ 201 (239)
T ss_pred HhCCCEEEEeec---ccCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 235888987631 11 122333466888888888888743
No 270
>PRK04302 triosephosphate isomerase; Provisional
Probab=21.83 E-value=1.6e+02 Score=29.78 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=42.6
Q ss_pred EEEEEeeCCCCCHh--HHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEecCc
Q 006635 45 LISGSIHYPRSTPE--MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (637)
Q Consensus 45 l~sG~~Hy~r~~~~--~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~GP 119 (637)
.+.+ -|+...++. .=+.-++.+|++|++.|-+ -|..++ -.|. .+.++++.|+++||.+|+..|.
T Consensus 58 ~v~a-q~~~~~~~G~~tg~~~~~~l~~~G~~~vii-----~~ser~--~~~~---e~~~~v~~a~~~Gl~~I~~v~~ 123 (223)
T PRK04302 58 PVYA-QHVDPVEPGSHTGHILPEAVKDAGAVGTLI-----NHSERR--LTLA---DIEAVVERAKKLGLESVVCVNN 123 (223)
T ss_pred eEEe-ccCCCCCCCCchhhhHHHHHHHcCCCEEEE-----eccccc--cCHH---HHHHHHHHHHHCCCeEEEEcCC
Confidence 3444 466543222 1223488999999999987 452222 2233 5899999999999999998764
No 271
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=21.46 E-value=1.8e+02 Score=30.95 Aligned_cols=66 Identities=17% Similarity=0.269 Sum_probs=49.3
Q ss_pred CCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcC--C-----------CCCceeeecCcccHHHHHHHHHHcCCEEEEecC
Q 006635 52 YPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGH--E-----------PSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (637)
Q Consensus 52 y~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~h--E-----------p~~G~ydF~g~~dL~~fl~la~~~GL~vilr~G 118 (637)
+-|+|.+.|.+.++.+.+-|+..|-+ +.-. | +.+...|+.|..+|..++.+++...+.|--..|
T Consensus 194 ~K~Wp~e~~~~l~~~l~~~~~~ivl~---g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l~Vs~DSG 270 (344)
T TIGR02201 194 FKCWDNDRFSALIDALHARGYEVVLT---SGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDHARLFIGVDSV 270 (344)
T ss_pred ccCCCHHHHHHHHHHHHhCCCeEEEe---cCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHhCCEEEecCCH
Confidence 45579999999999998878776644 3211 1 223468888988999999998888888877777
Q ss_pred ce
Q 006635 119 PY 120 (637)
Q Consensus 119 Py 120 (637)
|-
T Consensus 271 p~ 272 (344)
T TIGR02201 271 PM 272 (344)
T ss_pred HH
Confidence 63
No 272
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=21.41 E-value=2.5e+02 Score=31.65 Aligned_cols=59 Identities=17% Similarity=0.164 Sum_probs=47.1
Q ss_pred CCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEe
Q 006635 54 RSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (637)
Q Consensus 54 r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr 116 (637)
....+..++.++.+++.|.++=-.++. |-|.|.=-.|+=+ .+.+++++|+++++++|..
T Consensus 181 ~~~~~~le~a~~~a~~~~~~vk~lll~-nP~NPtG~~~s~e---~l~~l~~~~~~~~i~lI~D 239 (447)
T PLN02607 181 QVTPQALEAAYQEAEAANIRVRGVLIT-NPSNPLGATVQRS---VLEDILDFVVRKNIHLVSD 239 (447)
T ss_pred cCCHHHHHHHHHHHHHhCCCeeEEEEe-CCCCCcCcccCHH---HHHHHHHHHHHCCCEEEEe
Confidence 467788888898888888886555554 6788876666654 7999999999999999866
No 273
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.36 E-value=29 Score=34.55 Aligned_cols=69 Identities=19% Similarity=0.330 Sum_probs=46.1
Q ss_pred EeEEEEEEeeCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEe
Q 006635 42 RRILISGSIHYPRS---TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (637)
Q Consensus 42 ~~~l~sG~~Hy~r~---~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr 116 (637)
...+-+|--.|.|+ .|-.-++ -+.++|.+++-.=- ...--.--|||-...+|..|+++|+++||.+-|.
T Consensus 115 k~VVAaGYaDa~Rvgsv~Pl~~P~---vaa~ag~DvaMvDT---aiKDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 115 KKVVAAGYADAHRVGSVSPLLLPE---VAAEAGADVAMVDT---AIKDGKSLFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred ceEEeccccchhhccCcCccccHH---HHHhcCCCEEEEec---ccccchhHHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 34556676677774 3444443 46778888764310 1222334689988889999999999999988664
No 274
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=21.36 E-value=2.6e+02 Score=34.95 Aligned_cols=68 Identities=12% Similarity=0.156 Sum_probs=51.6
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCc--ccHHHHHHHHHHcCCEEEEecCceeeee
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVCAE 124 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~--~dL~~fl~la~~~GL~vilr~GPyi~aE 124 (637)
+.+.-++.++++++.||-+=.+++-|.+..- -+.|.|+-. -|..++++..++.|+++++-+-|+|..|
T Consensus 199 sq~eV~eva~~fre~~IP~DvIwlDidYm~g-~~~FTwD~~rFPdP~~mv~~Lh~~G~kvv~iidPgI~~d 268 (978)
T PLN02763 199 SAKRVAEIARTFREKKIPCDVVWMDIDYMDG-FRCFTFDKERFPDPKGLADDLHSIGFKAIWMLDPGIKAE 268 (978)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEehhhhcC-CCceeECcccCCCHHHHHHHHHHCCCEEEEEEcCCCccC
Confidence 5666788999999999987776666555442 334666532 3889999999999999988778888764
No 275
>COG3622 Hfi Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]
Probab=21.32 E-value=4e+02 Score=28.12 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=44.8
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEe---cCceeeeecCCCCCCcc
Q 006635 60 WEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLR---IGPYVCAEWNFGGFPVW 133 (637)
Q Consensus 60 W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr---~GPyi~aEw~~GG~P~W 133 (637)
-.+|++.+.++||..|+. .|....+....-+-+..+||...|. +|=+-.|||--..+|.=
T Consensus 17 Fl~Rf~aaa~aGF~~ve~--------------lfPyd~~~~~i~~~l~~~~L~~~Lfn~pagDw~~gErg~aalp~r 79 (260)
T COG3622 17 FLERFAAAAKAGFRGVEF--------------LFPYDYDAEELKARLDFNGLTQVLFNLPAGDWAAGERGIAALPGR 79 (260)
T ss_pred HHHHHHHHHHcCCceEEE--------------cCCCcccHHHHHHHHHHcCCceeeeCCCCcchhhhhcchhcCCCc
Confidence 357999999999999874 3444345566667788899998765 88888888866666754
No 276
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=21.25 E-value=71 Score=33.79 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=42.7
Q ss_pred HHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEec
Q 006635 63 LIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 63 ~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~ 117 (637)
.-+.+|+.|-+.+-.-|.|..-||+-.+-. ..-|.+|...|..++|..+|.|
T Consensus 116 sa~riK~~G~~avK~Lvy~~~D~~e~neqk---~a~ierigsec~aedi~f~lE~ 167 (306)
T COG3684 116 SAKRIKEDGGDAVKFLVYYRSDEDEINEQK---LAYIERIGSECHAEDLPFFLEP 167 (306)
T ss_pred CHHHHHHhcccceEEEEEEcCCchHHhHHH---HHHHHHHHHHhhhcCCceeEee
Confidence 356889999999999999999999322222 2258999999999999999997
No 277
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=21.16 E-value=2e+02 Score=28.32 Aligned_cols=41 Identities=12% Similarity=0.158 Sum_probs=33.1
Q ss_pred HHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEe
Q 006635 63 LIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (637)
Q Consensus 63 ~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr 116 (637)
.+++++++|.+.|.+..... ...+.++++.|+++|+.+++.
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~-------------~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVAD-------------DATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred HHHHHHHcCCCEEEEeccCC-------------HHHHHHHHHHHHHcCCEEEEE
Confidence 68899999999999854321 135789999999999999876
No 278
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=21.10 E-value=2.1e+02 Score=29.92 Aligned_cols=60 Identities=17% Similarity=0.313 Sum_probs=37.6
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCce-eeec-CcccHHHHHHHHHHc-CCEEEEecCc
Q 006635 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGH-YNFE-GSYDLVRFIKTVQRV-GLYAHLRIGP 119 (637)
Q Consensus 56 ~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~-ydF~-g~~dL~~fl~la~~~-GL~vilr~GP 119 (637)
.++.|.+..+.+.+.|++.|++- ..-|.... =++. ....+.++++.+++. ++-|+++.+|
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN----~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~ 171 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELN----LSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSP 171 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEE----cCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCC
Confidence 67889999999999999999883 33333211 0000 112456677777665 6677777654
No 279
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=21.05 E-value=1.8e+02 Score=31.88 Aligned_cols=67 Identities=16% Similarity=0.373 Sum_probs=49.2
Q ss_pred CEEeEEEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEecC
Q 006635 40 GQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (637)
Q Consensus 40 G~~~~l~sG~~Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr~G 118 (637)
|+|.+++.|...... ...+++..+.+++.|++.+ .+...+|.|- ..++++.++++++.+..+|+-+|
T Consensus 25 g~r~livt~~~~~~~--~g~~~~v~~~L~~~~~~~~----~~~~v~~~p~------~~~v~~~~~~~~~~~~D~IiavG 91 (380)
T cd08185 25 GKKALIVTGNGSSKK--TGYLDRVIELLKQAGVEVV----VFDKVEPNPT------TTTVMEGAALAREEGCDFVVGLG 91 (380)
T ss_pred CCeEEEEeCCCchhh--ccHHHHHHHHHHHcCCeEE----EeCCccCCCC------HHHHHHHHHHHHHcCCCEEEEeC
Confidence 588888888654211 3567777888889999753 2356666662 23788999999999999999987
No 280
>PLN02389 biotin synthase
Probab=21.03 E-value=1.2e+02 Score=33.58 Aligned_cols=50 Identities=12% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCEEEEccc--CCcCCCCCceeeecCcccHHHHHHHHHHcCCEE
Q 006635 61 EDLIRKAKDGGLDVIDTYVF--WNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA 113 (637)
Q Consensus 61 ~~~l~k~K~~G~N~I~~yvf--Wn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~v 113 (637)
++.++++|++|++.+..-+- -..+.-.-..-+|+ +..+.++.|++.||.|
T Consensus 178 ~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v 229 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYD---DRLETLEAVREAGISV 229 (379)
T ss_pred HHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeE
No 281
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=20.91 E-value=3e+02 Score=25.10 Aligned_cols=67 Identities=16% Similarity=0.136 Sum_probs=45.3
Q ss_pred EEEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHc-CCEEEEe
Q 006635 44 ILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRV-GLYAHLR 116 (637)
Q Consensus 44 ~l~sG~~Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~-GL~vilr 116 (637)
.-+-|-++=.=.|.+.+..++++|+..|+++|..-.-=-...|.+ .-- +++++.+..++. |+.||.-
T Consensus 38 ~elvgf~~CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~-~CP-----~~~~~~~~I~~~~gi~VV~G 105 (107)
T PF08821_consen 38 VELVGFFTCGGCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHG-PCP-----HIDEIKKIIEEKFGIEVVEG 105 (107)
T ss_pred eEEEEEeeCCCCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCC-CCC-----CHHHHHHHHHHHhCCCEeee
Confidence 334455555445788899999999999999998643211222221 111 578899999888 9988863
No 282
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=20.84 E-value=3.7e+02 Score=27.33 Aligned_cols=125 Identities=17% Similarity=0.156 Sum_probs=68.8
Q ss_pred HhHHHHHHHHHHHCCCCE-EEE--cccCCcCCC---CCc--eeeec-----------C--cccHHHHHHHHHHcCCEEEE
Q 006635 57 PEMWEDLIRKAKDGGLDV-IDT--YVFWNGHEP---SPG--HYNFE-----------G--SYDLVRFIKTVQRVGLYAHL 115 (637)
Q Consensus 57 ~~~W~~~l~k~K~~G~N~-I~~--yvfWn~hEp---~~G--~ydF~-----------g--~~dL~~fl~la~~~GL~vil 115 (637)
++.-.+.++++|+.|+.+ |+| |+.|...+. .=+ -+|+. | +..+.+.++.+.++|..+.+
T Consensus 53 ~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~i 132 (213)
T PRK10076 53 AEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIP 132 (213)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEE
Confidence 455678899999999864 344 444422221 111 22322 2 12445667778888988888
Q ss_pred ecCceeeeecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhccccccCCCceEEccccc-----------
Q 006635 116 RIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIEN----------- 184 (637)
Q Consensus 116 r~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~l~~~~l~~~~gGpII~~QIEN----------- 184 (637)
|. | -+|++ ++++.-++++.+|+..+. +. +|-+..--+
T Consensus 133 R~-~----------------vIPg~---nd~~e~i~~ia~~l~~l~--~~----------~~~llpyh~~g~~Ky~~lg~ 180 (213)
T PRK10076 133 RL-P----------------LIPGF---TLSRENMQQALDVLIPLG--IK----------QIHLLPFHQYGEPKYRLLGK 180 (213)
T ss_pred EE-E----------------EECCC---CCCHHHHHHHHHHHHHcC--Cc----------eEEEecCCccchhHHHHcCC
Confidence 85 1 23654 345555555555554320 11 222221111
Q ss_pred cccCCccccCcccHHHHHHHHHHHhcCCCCc
Q 006635 185 EYGPESKSLGAAGHAYVNWAAKMAVGLDTGV 215 (637)
Q Consensus 185 Eyg~~~~~~~~~~~~y~~~l~~~~~~~g~~v 215 (637)
+|-. .....+.++.++.+++++++.|+.+
T Consensus 181 ~y~~--~~~~~~~~~~l~~~~~~~~~~gl~~ 209 (213)
T PRK10076 181 TWSM--KEVPAPSSADVATMREMAERAGFQV 209 (213)
T ss_pred cCcc--CCCCCcCHHHHHHHHHHHHHcCCeE
Confidence 2211 0122467889999999999988876
No 283
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=20.72 E-value=2.1e+02 Score=33.09 Aligned_cols=53 Identities=25% Similarity=0.391 Sum_probs=44.6
Q ss_pred CCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEEEEe
Q 006635 52 YPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (637)
Q Consensus 52 y~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~vilr 116 (637)
|..+|.+.-+..++++.+.|+++|+++.+.|.. +++...++.+++.|..+...
T Consensus 91 y~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv------------~nl~~ai~~vk~ag~~~~~~ 143 (499)
T PRK12330 91 YRHYEDEVVDRFVEKSAENGMDVFRVFDALNDP------------RNLEHAMKAVKKVGKHAQGT 143 (499)
T ss_pred ccCcchhHHHHHHHHHHHcCCCEEEEEecCChH------------HHHHHHHHHHHHhCCeEEEE
Confidence 555677788889999999999999998777665 48999999999999987443
No 284
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=20.65 E-value=2.9e+02 Score=30.32 Aligned_cols=87 Identities=24% Similarity=0.438 Sum_probs=58.0
Q ss_pred CCEEeEEEEEEeeCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCcccHHHHHHHHHHcCCEE----E
Q 006635 39 NGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA----H 114 (637)
Q Consensus 39 dG~~~~l~sG~~Hy~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~dL~~fl~la~~~GL~v----i 114 (637)
.|++++.++|=-|+.| -++.++++|++.+.++.| |+.|+|+- .+|..+.+.++..||.. .
T Consensus 232 ~~~~v~afaGIg~P~r--------Ff~tL~~~g~~~~~~~~F-------pDH~~f~~-~~l~~l~~~~~~~~Ll~TeKDa 295 (336)
T COG1663 232 KGKRVVAFAGIGNPQR--------FFATLRNLGIQVVETLAF-------PDHYDFSA-ADLEDLAKKAQADGLLTTEKDA 295 (336)
T ss_pred CCceEEEEEecCChHH--------HHHHHHHcCcceeeeecC-------CchhhccH-HHHHHHHhhhccceEEeeccce
Confidence 3588999999888854 466789999999999876 67777773 47888888887755554 2
Q ss_pred EecCceeeeecCCCCCCcccccCCCeeeecCChh
Q 006635 115 LRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGP 148 (637)
Q Consensus 115 lr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~~~ 148 (637)
++..+....+| |...+..+.++-+.+.
T Consensus 296 VKl~~~~~~~~-------~~l~v~~~~~~~e~~~ 322 (336)
T COG1663 296 VKLRDFAPENV-------WNLPVLAIELSFELPD 322 (336)
T ss_pred eecccccchhh-------ccceeeEEeccccchh
Confidence 45544333333 3343444455555554
No 285
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.41 E-value=4.4e+02 Score=25.41 Aligned_cols=45 Identities=18% Similarity=0.349 Sum_probs=30.5
Q ss_pred HHHHHHCCCCEEEEcccCCcCCCCCceeeecCcc--cHHHHHHHHHHcCCEEE
Q 006635 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSY--DLVRFIKTVQRVGLYAH 114 (637)
Q Consensus 64 l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~~--dL~~fl~la~~~GL~vi 114 (637)
++.+.+.+-.+|+|-.+|- +|.-.|+|.+ +|-+.+. ++...+.|+
T Consensus 40 ~qeLeal~~~T~ete~Pw~-----~gn~rf~Gvsls~Ll~~l~-ak~tslt~i 86 (155)
T COG3915 40 LQELEALPDETIETETPWT-----QGNTRFKGVSLSALLAWLG-AKQTSLTVI 86 (155)
T ss_pred HHHHhcCCcceEEEecCcc-----cCceeecceeHHHHHHHhh-ccCcceEEE
Confidence 5667789999999999984 5777888853 4444444 444455554
No 286
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=20.34 E-value=6.4e+02 Score=27.87 Aligned_cols=75 Identities=19% Similarity=0.342 Sum_probs=54.3
Q ss_pred cEEEC-CEEeEEEEEEeeCCCC--CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCceeeecCc--ccHHHHHHHHHHc
Q 006635 35 AILIN-GQRRILISGSIHYPRS--TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRV 109 (637)
Q Consensus 35 ~l~id-G~~~~l~sG~~Hy~r~--~~~~W~~~l~k~K~~G~N~I~~yvfWn~hEp~~G~ydF~g~--~dL~~fl~la~~~ 109 (637)
.+.+. ++|++++.| |-+ .+++-.+.-+.+|+.|...++-+.|= |+---|.|.|. .-|.-+-+.+++.
T Consensus 93 ~v~iGg~~~l~vIAG----PCsIEs~eq~l~~A~~lk~~g~~~~r~g~~k----pRtsp~sf~G~g~~gl~~L~~~~~e~ 164 (352)
T PRK13396 93 PVPFGENHPVVVVAG----PCSVENEEMIVETAKRVKAAGAKFLRGGAYK----PRTSPYAFQGHGESALELLAAAREAT 164 (352)
T ss_pred CeEecCCCeEEEEEe----CCcccCHHHHHHHHHHHHHcCCCEEEeeeec----CCCCCcccCCchHHHHHHHHHHHHHc
Confidence 45555 466788888 333 67777788899999999999987665 44444777753 4566666678899
Q ss_pred CCEEEEec
Q 006635 110 GLYAHLRI 117 (637)
Q Consensus 110 GL~vilr~ 117 (637)
||.++-.+
T Consensus 165 Gl~~~tev 172 (352)
T PRK13396 165 GLGIITEV 172 (352)
T ss_pred CCcEEEee
Confidence 99988765
No 287
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=20.24 E-value=2.3e+02 Score=29.75 Aligned_cols=75 Identities=17% Similarity=0.285 Sum_probs=50.4
Q ss_pred EEeEEEEEEeeC-CCCCHhHHHHHHHHHHHCCCCEEEEcccCCcC-C---------CCCceeeecCcccHHHHHHHHHHc
Q 006635 41 QRRILISGSIHY-PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGH-E---------PSPGHYNFEGSYDLVRFIKTVQRV 109 (637)
Q Consensus 41 ~~~~l~sG~~Hy-~r~~~~~W~~~l~k~K~~G~N~I~~yvfWn~h-E---------p~~G~ydF~g~~dL~~fl~la~~~ 109 (637)
+-+++..|.-+. -|+|++.|.+.++.+.+.|+..|=+ +..- | ..++. ++.|..+|..++.+++..
T Consensus 180 ~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~---~g~~~e~~~~~~i~~~~~~~-~l~g~~sL~el~ali~~a 255 (319)
T TIGR02193 180 PYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLP---WGNDAEKQRAERIAEALPGA-VVLPKMSLAEVAALLAGA 255 (319)
T ss_pred CEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEe---CCCHHHHHHHHHHHhhCCCC-eecCCCCHHHHHHHHHcC
Confidence 334445554454 4469999999999997778776633 2211 1 11222 677888899999998888
Q ss_pred CCEEEEecCc
Q 006635 110 GLYAHLRIGP 119 (637)
Q Consensus 110 GL~vilr~GP 119 (637)
.+.|--..||
T Consensus 256 ~l~I~~DSgp 265 (319)
T TIGR02193 256 DAVVGVDTGL 265 (319)
T ss_pred CEEEeCCChH
Confidence 8888777776
No 288
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=20.23 E-value=1.1e+02 Score=36.83 Aligned_cols=57 Identities=14% Similarity=0.328 Sum_probs=37.0
Q ss_pred HHHHHHHHHCCCCEEEEc-c--------cCCcCCC----CCceeeec----CcccHHHHHHHHHHcCCEEEEec
Q 006635 61 EDLIRKAKDGGLDVIDTY-V--------FWNGHEP----SPGHYNFE----GSYDLVRFIKTVQRVGLYAHLRI 117 (637)
Q Consensus 61 ~~~l~k~K~~G~N~I~~y-v--------fWn~hEp----~~G~ydF~----g~~dL~~fl~la~~~GL~vilr~ 117 (637)
+++|..+|.+|+|+|+.- | .|..+-. --++|--. -..++.+++|.|++.||.|+|.+
T Consensus 258 eKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 258 EKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 455888999999999952 2 2433210 00111000 01389999999999999999985
No 289
>PLN03244 alpha-amylase; Provisional
Probab=20.12 E-value=1.2e+03 Score=28.97 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=20.9
Q ss_pred cccHHHHHHHHHHcCCEEEEecCc
Q 006635 96 SYDLVRFIKTVQRVGLYAHLRIGP 119 (637)
Q Consensus 96 ~~dL~~fl~la~~~GL~vilr~GP 119 (637)
..||.+||+.|+++||.|||..=|
T Consensus 440 PeDLK~LVD~aH~~GI~VILDvV~ 463 (872)
T PLN03244 440 PDDFKRLVDEAHGLGLLVFLDIVH 463 (872)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecC
Confidence 368999999999999999998533
Done!