Query 006636
Match_columns 637
No_of_seqs 846 out of 4159
Neff 10.8
Searched_HMMs 46136
Date Thu Mar 28 12:17:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006636.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006636hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.4E-80 3E-85 692.0 47.8 527 67-624 217-753 (857)
2 PLN03081 pentatricopeptide (PP 100.0 1.4E-72 2.9E-77 613.2 51.4 503 70-623 85-589 (697)
3 PLN03218 maturation of RBCL 1; 100.0 1.7E-64 3.8E-69 551.2 63.4 510 67-585 365-913 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 1.8E-62 3.9E-67 535.5 61.4 446 70-520 404-874 (1060)
5 PLN03077 Protein ECB2; Provisi 100.0 8E-62 1.7E-66 541.5 46.9 441 67-521 147-617 (857)
6 PLN03081 pentatricopeptide (PP 100.0 3E-59 6.5E-64 508.6 43.7 440 104-583 84-525 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.9E-30 4.2E-35 296.1 60.3 497 71-584 362-869 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.7E-30 8.1E-35 293.8 59.9 494 69-579 394-898 (899)
9 PRK11447 cellulose synthase su 99.9 1.7E-22 3.6E-27 231.5 56.8 371 69-447 59-553 (1157)
10 PRK11447 cellulose synthase su 99.9 3.7E-22 8.1E-27 228.6 56.5 488 76-578 116-737 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 2E-22 4.3E-27 195.4 36.4 432 75-524 51-487 (966)
12 KOG4626 O-linked N-acetylgluco 99.9 6.2E-22 1.3E-26 192.1 33.4 444 110-570 51-508 (966)
13 TIGR00990 3a0801s09 mitochondr 99.9 8.6E-19 1.9E-23 188.8 55.7 431 74-523 129-572 (615)
14 PRK11788 tetratricopeptide rep 99.9 4E-21 8.7E-26 196.5 34.3 311 151-474 44-363 (389)
15 PRK09782 bacteriophage N4 rece 99.9 6.2E-19 1.4E-23 193.0 51.7 222 352-583 476-708 (987)
16 TIGR00990 3a0801s09 mitochondr 99.9 8E-19 1.7E-23 189.0 51.4 424 109-549 129-575 (615)
17 PRK11788 tetratricopeptide rep 99.9 3.1E-20 6.7E-25 190.0 36.8 302 184-493 42-353 (389)
18 PRK15174 Vi polysaccharide exp 99.9 2.8E-18 6E-23 184.1 49.6 327 114-451 49-380 (656)
19 PRK15174 Vi polysaccharide exp 99.9 3.1E-18 6.6E-23 183.8 46.9 353 76-452 46-403 (656)
20 PRK10049 pgaA outer membrane p 99.9 8E-18 1.7E-22 184.5 51.1 403 71-486 14-455 (765)
21 PRK10049 pgaA outer membrane p 99.9 6E-18 1.3E-22 185.5 49.7 412 104-525 12-459 (765)
22 PRK09782 bacteriophage N4 rece 99.9 6.6E-18 1.4E-22 185.1 49.6 469 82-573 160-732 (987)
23 PRK14574 hmsH outer membrane p 99.9 1.1E-16 2.3E-21 172.1 53.6 434 79-525 41-516 (822)
24 KOG2002 TPR-containing nuclear 99.9 3.1E-17 6.8E-22 168.2 43.3 447 68-525 266-748 (1018)
25 PRK14574 hmsH outer membrane p 99.8 2.7E-15 5.8E-20 161.4 51.1 425 115-551 42-519 (822)
26 KOG2002 TPR-containing nuclear 99.8 3.8E-15 8.2E-20 153.1 43.2 440 73-522 308-798 (1018)
27 KOG0495 HAT repeat protein [RN 99.8 2.6E-13 5.6E-18 133.7 46.3 507 69-599 377-896 (913)
28 KOG1915 Cell cycle control pro 99.8 4.5E-13 9.7E-18 127.2 44.8 512 71-595 72-645 (677)
29 KOG4422 Uncharacterized conser 99.7 1.4E-12 2.9E-17 122.5 45.6 425 72-520 116-588 (625)
30 KOG0495 HAT repeat protein [RN 99.7 5.9E-12 1.3E-16 124.3 48.0 429 78-522 412-846 (913)
31 KOG4422 Uncharacterized conser 99.7 7E-13 1.5E-17 124.4 39.6 364 68-453 203-591 (625)
32 KOG2076 RNA polymerase III tra 99.7 4.8E-12 1E-16 129.9 48.8 369 70-445 137-548 (895)
33 KOG2003 TPR repeat-containing 99.7 5.9E-14 1.3E-18 132.2 30.6 439 75-524 204-691 (840)
34 KOG2076 RNA polymerase III tra 99.7 4.5E-12 9.9E-17 130.1 42.2 363 112-480 144-548 (895)
35 KOG0547 Translocase of outer m 99.7 1.2E-12 2.5E-17 125.1 34.5 418 72-520 115-564 (606)
36 PRK10747 putative protoheme IX 99.7 1.1E-12 2.4E-17 132.9 36.3 289 190-520 97-388 (398)
37 KOG2003 TPR repeat-containing 99.7 4.2E-13 9.1E-18 126.6 29.8 430 112-549 206-693 (840)
38 KOG1155 Anaphase-promoting com 99.6 6E-11 1.3E-15 112.9 43.2 293 220-520 234-534 (559)
39 TIGR00540 hemY_coli hemY prote 99.6 1.5E-12 3.3E-17 132.6 35.1 259 256-519 126-396 (409)
40 TIGR00540 hemY_coli hemY prote 99.6 2.5E-12 5.5E-17 131.1 35.4 289 189-485 96-397 (409)
41 PRK10747 putative protoheme IX 99.6 3.9E-12 8.5E-17 128.9 36.3 289 154-485 96-388 (398)
42 PF13429 TPR_15: Tetratricopep 99.6 5.5E-15 1.2E-19 143.1 13.4 262 77-345 13-275 (280)
43 PF13429 TPR_15: Tetratricopep 99.6 4.1E-15 9E-20 144.0 12.2 257 220-483 15-273 (280)
44 KOG1155 Anaphase-promoting com 99.6 1.8E-10 4E-15 109.7 42.2 312 183-522 233-553 (559)
45 KOG1915 Cell cycle control pro 99.6 1.2E-09 2.6E-14 104.4 46.2 438 68-520 103-583 (677)
46 KOG1126 DNA-binding cell divis 99.5 2.2E-12 4.7E-17 128.4 25.1 286 227-524 333-622 (638)
47 COG2956 Predicted N-acetylgluc 99.5 4.3E-11 9.3E-16 108.8 30.5 222 157-381 50-277 (389)
48 KOG1126 DNA-binding cell divis 99.5 6.3E-12 1.4E-16 125.2 26.3 284 192-488 334-621 (638)
49 COG2956 Predicted N-acetylgluc 99.5 1.2E-10 2.5E-15 106.0 31.5 286 120-416 48-346 (389)
50 COG3071 HemY Uncharacterized e 99.5 2.8E-10 6.1E-15 106.9 33.9 285 190-485 97-388 (400)
51 COG3071 HemY Uncharacterized e 99.5 3.2E-10 6.9E-15 106.5 33.7 286 225-520 96-388 (400)
52 KOG1173 Anaphase-promoting com 99.5 7.3E-10 1.6E-14 108.4 36.3 289 245-545 241-535 (611)
53 KOG0547 Translocase of outer m 99.5 3.1E-10 6.6E-15 108.9 30.8 390 111-524 119-534 (606)
54 KOG3785 Uncharacterized conser 99.4 1.8E-09 4E-14 99.4 32.1 118 398-520 369-488 (557)
55 KOG1156 N-terminal acetyltrans 99.4 4E-08 8.6E-13 98.0 42.2 422 84-520 53-509 (700)
56 KOG1156 N-terminal acetyltrans 99.4 4.8E-08 1E-12 97.5 42.1 431 73-519 9-465 (700)
57 KOG1173 Anaphase-promoting com 99.4 3.3E-09 7.2E-14 103.9 32.9 282 177-502 244-531 (611)
58 KOG2047 mRNA splicing factor [ 99.4 9.5E-08 2E-12 95.1 43.2 163 72-241 102-276 (835)
59 PRK12370 invasion protein regu 99.4 6.5E-10 1.4E-14 117.9 31.0 269 104-383 253-536 (553)
60 KOG2047 mRNA splicing factor [ 99.4 2E-07 4.3E-12 92.9 45.3 266 250-520 389-685 (835)
61 TIGR02521 type_IV_pilW type IV 99.4 5.5E-10 1.2E-14 105.2 27.5 96 72-169 31-126 (234)
62 PRK12370 invasion protein regu 99.4 1.2E-09 2.6E-14 115.9 31.5 269 139-418 253-536 (553)
63 TIGR02521 type_IV_pilW type IV 99.4 8.6E-10 1.9E-14 103.9 27.6 204 105-312 29-232 (234)
64 KOG1129 TPR repeat-containing 99.4 2.5E-10 5.5E-15 103.8 21.9 233 286-525 226-461 (478)
65 KOG4162 Predicted calmodulin-b 99.3 5E-08 1.1E-12 99.3 37.9 407 104-522 320-783 (799)
66 KOG4318 Bicoid mRNA stability 99.3 8.8E-09 1.9E-13 105.9 32.2 425 69-522 22-557 (1088)
67 KOG4318 Bicoid mRNA stability 99.3 5.7E-10 1.2E-14 114.4 22.8 90 129-231 12-101 (1088)
68 KOG1129 TPR repeat-containing 99.3 1.2E-09 2.6E-14 99.5 22.4 238 247-492 222-461 (478)
69 KOG1174 Anaphase-promoting com 99.3 4.5E-07 9.7E-12 85.8 39.7 305 211-525 192-503 (564)
70 KOG1174 Anaphase-promoting com 99.3 4E-07 8.6E-12 86.1 38.8 310 173-494 190-505 (564)
71 KOG1840 Kinesin light chain [C 99.2 1.1E-08 2.5E-13 103.3 28.9 99 424-522 368-479 (508)
72 KOG2376 Signal recognition par 99.2 7.5E-07 1.6E-11 88.2 39.7 418 79-520 19-518 (652)
73 KOG1840 Kinesin light chain [C 99.2 7E-09 1.5E-13 104.8 26.8 238 248-485 199-477 (508)
74 PF12569 NARP1: NMDA receptor- 99.2 7.8E-08 1.7E-12 98.6 33.4 293 183-521 10-333 (517)
75 PF13041 PPR_2: PPR repeat fam 99.2 6.4E-11 1.4E-15 80.2 6.7 49 421-469 1-49 (50)
76 KOG4162 Predicted calmodulin-b 99.2 1.4E-06 3E-11 89.1 39.4 401 137-549 318-787 (799)
77 PF12569 NARP1: NMDA receptor- 99.2 1.5E-07 3.3E-12 96.5 33.4 130 285-416 196-333 (517)
78 PRK11189 lipoprotein NlpI; Pro 99.2 3.5E-08 7.6E-13 95.8 27.3 218 86-313 40-266 (296)
79 COG3063 PilF Tfp pilus assembl 99.2 5.6E-08 1.2E-12 84.9 24.9 123 117-241 45-167 (250)
80 PF13041 PPR_2: PPR repeat fam 99.1 1.4E-10 3E-15 78.5 6.5 49 211-259 1-49 (50)
81 KOG0548 Molecular co-chaperone 99.1 7.4E-07 1.6E-11 87.5 32.4 393 79-497 9-463 (539)
82 PRK11189 lipoprotein NlpI; Pro 99.1 2.1E-07 4.6E-12 90.3 29.1 149 122-275 41-192 (296)
83 COG3063 PilF Tfp pilus assembl 99.1 1.3E-07 2.9E-12 82.6 23.9 200 321-524 38-238 (250)
84 KOG3785 Uncharacterized conser 99.1 6.2E-07 1.4E-11 83.0 29.3 411 79-519 29-454 (557)
85 KOG1127 TPR repeat-containing 99.1 2E-07 4.4E-12 97.3 29.0 476 87-572 473-1027(1238)
86 KOG0985 Vesicle coat protein c 99.1 8.1E-07 1.8E-11 92.8 32.9 417 75-516 609-1189(1666)
87 KOG4340 Uncharacterized conser 99.1 4.1E-07 8.8E-12 82.3 27.1 291 75-378 13-335 (459)
88 KOG0548 Molecular co-chaperone 99.1 1.6E-06 3.6E-11 85.1 33.3 381 67-470 31-471 (539)
89 cd05804 StaR_like StaR_like; a 99.1 1.8E-06 4E-11 87.0 35.6 23 394-416 270-292 (355)
90 cd05804 StaR_like StaR_like; a 99.0 2E-06 4.3E-11 86.8 34.5 199 72-275 6-213 (355)
91 KOG2376 Signal recognition par 99.0 7.5E-06 1.6E-10 81.4 34.5 219 114-349 19-255 (652)
92 KOG3616 Selective LIM binding 99.0 1.2E-06 2.7E-11 88.5 29.1 192 291-516 740-931 (1636)
93 KOG0624 dsRNA-activated protei 98.9 3.3E-05 7.1E-10 71.7 34.7 318 70-418 36-371 (504)
94 KOG0624 dsRNA-activated protei 98.9 1.3E-05 2.8E-10 74.3 31.7 316 140-486 36-369 (504)
95 PF04733 Coatomer_E: Coatomer 98.9 8.3E-08 1.8E-12 91.7 17.6 248 223-486 11-264 (290)
96 KOG1914 mRNA cleavage and poly 98.9 9.8E-05 2.1E-09 72.9 42.7 136 67-206 15-166 (656)
97 PRK04841 transcriptional regul 98.9 1.5E-05 3.2E-10 91.3 39.0 265 222-486 461-759 (903)
98 KOG3616 Selective LIM binding 98.9 5.8E-06 1.3E-10 83.8 30.1 205 360-596 739-953 (1636)
99 PF04733 Coatomer_E: Coatomer 98.9 6.5E-08 1.4E-12 92.4 16.0 250 258-524 11-267 (290)
100 KOG1125 TPR repeat-containing 98.9 6E-07 1.3E-11 88.9 22.5 220 80-309 293-524 (579)
101 PRK04841 transcriptional regul 98.9 2.2E-05 4.8E-10 89.9 39.3 336 187-523 384-761 (903)
102 KOG3617 WD40 and TPR repeat-co 98.8 0.00012 2.7E-09 75.5 37.5 331 82-449 738-1171(1416)
103 KOG4340 Uncharacterized conser 98.8 2.2E-05 4.9E-10 71.3 28.7 291 110-413 13-335 (459)
104 KOG1127 TPR repeat-containing 98.8 1.3E-05 2.7E-10 84.4 30.1 441 122-576 473-991 (1238)
105 KOG1125 TPR repeat-containing 98.8 1.2E-06 2.7E-11 86.7 20.6 247 189-443 297-562 (579)
106 KOG3617 WD40 and TPR repeat-co 98.7 0.00017 3.6E-09 74.6 34.9 370 105-519 724-1171(1416)
107 PLN02789 farnesyltranstransfer 98.7 3.1E-05 6.8E-10 75.2 28.2 145 74-223 39-186 (320)
108 PLN02789 farnesyltranstransfer 98.7 3.1E-05 6.7E-10 75.2 28.1 236 86-346 34-301 (320)
109 KOG0985 Vesicle coat protein c 98.7 0.00039 8.5E-09 73.6 37.0 201 248-483 1104-1304(1666)
110 KOG1070 rRNA processing protei 98.7 1.8E-05 3.8E-10 86.2 27.7 207 210-421 1455-1667(1710)
111 KOG1128 Uncharacterized conser 98.7 3.5E-06 7.6E-11 85.8 20.7 222 280-523 395-617 (777)
112 KOG1128 Uncharacterized conser 98.7 6.3E-06 1.4E-10 84.0 22.3 219 246-485 396-614 (777)
113 KOG1070 rRNA processing protei 98.6 2.9E-05 6.3E-10 84.6 26.3 240 94-341 1446-1694(1710)
114 COG5010 TadD Flp pilus assembl 98.6 1.9E-05 4.2E-10 71.0 20.2 158 357-518 70-227 (257)
115 COG5010 TadD Flp pilus assembl 98.6 9.7E-06 2.1E-10 72.8 18.2 165 106-276 66-230 (257)
116 PRK10370 formate-dependent nit 98.5 1.9E-05 4.2E-10 71.3 20.2 118 366-486 52-172 (198)
117 TIGR03302 OM_YfiO outer membra 98.5 1.5E-05 3.2E-10 75.0 20.4 187 317-522 32-232 (235)
118 PRK10370 formate-dependent nit 98.5 3.7E-05 8E-10 69.4 21.5 149 360-524 23-175 (198)
119 PRK14720 transcript cleavage f 98.5 9.8E-05 2.1E-09 79.9 27.7 278 212-549 30-310 (906)
120 PF12854 PPR_1: PPR repeat 98.5 1.8E-07 3.9E-12 56.6 4.0 31 173-203 3-33 (34)
121 TIGR03302 OM_YfiO outer membra 98.5 3.7E-05 8.1E-10 72.3 22.0 60 253-312 171-232 (235)
122 PF12854 PPR_1: PPR repeat 98.5 2.2E-07 4.8E-12 56.3 4.2 32 418-449 2-33 (34)
123 PRK15359 type III secretion sy 98.5 1.6E-05 3.4E-10 67.8 16.7 94 391-486 27-120 (144)
124 KOG3081 Vesicle coat complex C 98.5 0.00025 5.4E-09 63.9 24.2 108 364-476 148-259 (299)
125 KOG1914 mRNA cleavage and poly 98.5 0.0022 4.8E-08 63.7 42.3 415 104-524 17-503 (656)
126 PRK14720 transcript cleavage f 98.5 8.9E-05 1.9E-09 80.3 25.6 240 139-434 28-268 (906)
127 PRK15359 type III secretion sy 98.4 2.5E-05 5.3E-10 66.6 15.5 95 110-206 27-121 (144)
128 PRK15179 Vi polysaccharide bio 98.4 0.00031 6.8E-09 75.4 26.8 182 138-330 82-267 (694)
129 KOG3081 Vesicle coat complex C 98.3 0.00051 1.1E-08 62.0 23.5 230 79-326 15-249 (299)
130 PRK15179 Vi polysaccharide bio 98.3 0.00013 2.8E-09 78.3 23.4 148 102-254 81-228 (694)
131 TIGR02552 LcrH_SycD type III s 98.3 3.3E-05 7.1E-10 65.5 15.5 96 389-486 18-113 (135)
132 TIGR02552 LcrH_SycD type III s 98.3 5.5E-05 1.2E-09 64.1 15.6 120 340-464 5-124 (135)
133 COG4783 Putative Zn-dependent 98.2 0.00068 1.5E-08 66.7 23.4 239 79-347 209-454 (484)
134 KOG3060 Uncharacterized conser 98.2 0.0027 5.8E-08 57.0 24.6 163 286-452 55-220 (289)
135 KOG3060 Uncharacterized conser 98.2 0.0023 5.1E-08 57.4 23.6 118 190-311 99-219 (289)
136 COG4783 Putative Zn-dependent 98.2 0.00088 1.9E-08 65.9 23.0 117 154-274 318-434 (484)
137 PF09976 TPR_21: Tetratricopep 98.1 0.00023 4.9E-09 61.0 16.1 126 390-519 14-144 (145)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00023 4.9E-09 70.6 16.3 126 143-275 170-295 (395)
139 PF09976 TPR_21: Tetratricopep 98.0 0.00064 1.4E-08 58.2 16.0 21 150-170 56-76 (145)
140 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00033 7.1E-09 69.5 15.7 126 109-241 171-296 (395)
141 TIGR00756 PPR pentatricopeptid 97.9 2.1E-05 4.6E-10 48.3 4.5 33 425-457 2-34 (35)
142 TIGR00756 PPR pentatricopeptid 97.9 2.7E-05 5.8E-10 47.9 4.2 33 74-106 2-34 (35)
143 KOG2053 Mitochondrial inherita 97.8 0.064 1.4E-06 57.1 47.6 201 75-279 44-257 (932)
144 cd00189 TPR Tetratricopeptide 97.8 0.00043 9.4E-09 53.9 11.8 89 394-484 6-94 (100)
145 PF13812 PPR_3: Pentatricopept 97.8 3.6E-05 7.8E-10 46.9 4.1 32 425-456 3-34 (34)
146 KOG2041 WD40 repeat protein [G 97.8 0.061 1.3E-06 55.5 29.7 205 104-343 689-903 (1189)
147 PF13812 PPR_3: Pentatricopept 97.8 4.9E-05 1.1E-09 46.3 4.3 33 73-105 2-34 (34)
148 KOG2053 Mitochondrial inherita 97.7 0.092 2E-06 56.0 45.9 225 81-313 18-256 (932)
149 PRK15363 pathogenicity island 97.7 0.0023 5.1E-08 53.8 15.1 92 392-485 39-130 (157)
150 KOG0553 TPR repeat-containing 97.7 0.00051 1.1E-08 63.3 12.1 95 398-497 91-186 (304)
151 KOG0553 TPR repeat-containing 97.7 0.00036 7.8E-09 64.3 11.0 111 432-548 90-201 (304)
152 PLN03088 SGT1, suppressor of 97.7 0.0012 2.5E-08 65.9 15.5 88 362-451 11-98 (356)
153 cd00189 TPR Tetratricopeptide 97.7 0.00083 1.8E-08 52.2 12.0 95 356-452 3-97 (100)
154 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0011 2.3E-08 54.5 12.9 95 391-486 5-104 (119)
155 PF06239 ECSIT: Evolutionarily 97.7 0.0017 3.7E-08 57.3 13.6 136 386-543 45-196 (228)
156 PRK02603 photosystem I assembl 97.6 0.0045 9.8E-08 54.7 16.1 83 390-473 37-121 (172)
157 PLN03088 SGT1, suppressor of 97.6 0.0022 4.8E-08 64.0 15.5 95 396-494 10-104 (356)
158 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0035 7.5E-08 51.4 14.4 17 82-98 12-28 (119)
159 PF10037 MRP-S27: Mitochondria 97.6 0.0013 2.9E-08 65.6 13.5 124 313-436 61-186 (429)
160 PRK02603 photosystem I assembl 97.6 0.005 1.1E-07 54.5 16.1 92 353-445 35-128 (172)
161 PRK10153 DNA-binding transcrip 97.6 0.0051 1.1E-07 64.1 18.4 142 349-495 333-488 (517)
162 PF12895 Apc3: Anaphase-promot 97.5 0.00012 2.6E-09 55.9 4.5 79 437-518 3-83 (84)
163 PRK15363 pathogenicity island 97.5 0.003 6.4E-08 53.2 12.9 99 423-523 35-133 (157)
164 KOG0550 Molecular chaperone (D 97.5 0.011 2.3E-07 57.1 17.9 276 218-522 54-350 (486)
165 PF14938 SNAP: Soluble NSF att 97.5 0.016 3.5E-07 55.9 19.8 208 72-310 35-264 (282)
166 COG5107 RNA14 Pre-mRNA 3'-end 97.5 0.12 2.5E-06 50.8 34.4 436 66-525 36-534 (660)
167 PF05843 Suf: Suppressor of fo 97.5 0.0031 6.8E-08 60.5 14.6 43 196-240 55-97 (280)
168 PF01535 PPR: PPR repeat; Int 97.5 0.00013 2.7E-09 43.3 3.2 29 425-453 2-30 (31)
169 PF05843 Suf: Suppressor of fo 97.5 0.002 4.4E-08 61.8 13.2 129 74-205 3-135 (280)
170 PF10037 MRP-S27: Mitochondria 97.5 0.0018 3.8E-08 64.7 12.9 124 278-401 61-186 (429)
171 CHL00033 ycf3 photosystem I as 97.5 0.0026 5.6E-08 56.1 12.8 94 388-482 35-137 (168)
172 PRK10153 DNA-binding transcrip 97.5 0.0094 2E-07 62.2 18.5 140 382-524 331-484 (517)
173 CHL00033 ycf3 photosystem I as 97.4 0.004 8.7E-08 54.9 13.6 96 353-449 35-139 (168)
174 PF12895 Apc3: Anaphase-promot 97.4 0.00034 7.4E-09 53.3 5.8 20 183-202 31-50 (84)
175 KOG0550 Molecular chaperone (D 97.4 0.13 2.8E-06 50.0 23.8 63 72-135 49-111 (486)
176 PF01535 PPR: PPR repeat; Int 97.4 0.00019 4.2E-09 42.5 3.3 30 73-102 1-30 (31)
177 COG4700 Uncharacterized protei 97.4 0.058 1.3E-06 46.3 18.6 130 385-516 86-216 (251)
178 PF08579 RPM2: Mitochondrial r 97.4 0.0033 7.1E-08 49.0 10.3 77 76-152 29-114 (120)
179 KOG2041 WD40 repeat protein [G 97.4 0.25 5.4E-06 51.2 30.7 202 70-310 690-905 (1189)
180 COG4700 Uncharacterized protei 97.3 0.084 1.8E-06 45.3 18.9 128 175-305 87-215 (251)
181 PF08579 RPM2: Mitochondrial r 97.3 0.007 1.5E-07 47.3 11.1 79 111-189 29-116 (120)
182 COG4235 Cytochrome c biogenesi 97.3 0.017 3.6E-07 53.9 15.6 99 386-486 154-255 (287)
183 PF14938 SNAP: Soluble NSF att 97.3 0.072 1.6E-06 51.4 21.0 111 184-311 101-224 (282)
184 PF13432 TPR_16: Tetratricopep 97.2 0.0014 3E-08 47.0 6.8 56 395-451 4-59 (65)
185 PF13414 TPR_11: TPR repeat; P 97.2 0.0016 3.5E-08 47.3 7.0 62 389-451 4-66 (69)
186 PRK10866 outer membrane biogen 97.2 0.2 4.2E-06 47.0 23.7 58 253-310 180-239 (243)
187 PRK10866 outer membrane biogen 97.2 0.1 2.2E-06 48.9 20.5 54 430-483 182-237 (243)
188 PF13432 TPR_16: Tetratricopep 97.2 0.0016 3.5E-08 46.6 6.7 56 430-486 4-59 (65)
189 KOG2796 Uncharacterized conser 97.2 0.051 1.1E-06 49.3 17.1 131 145-277 180-315 (366)
190 PF13414 TPR_11: TPR repeat; P 97.2 0.0017 3.7E-08 47.2 6.8 64 422-486 2-66 (69)
191 PF12688 TPR_5: Tetratrico pep 97.1 0.039 8.4E-07 44.8 14.6 56 396-451 9-66 (120)
192 PF06239 ECSIT: Evolutionarily 97.1 0.016 3.5E-07 51.3 12.9 88 105-192 45-153 (228)
193 COG4235 Cytochrome c biogenesi 97.1 0.039 8.4E-07 51.6 15.9 99 176-277 155-256 (287)
194 PF14559 TPR_19: Tetratricopep 97.0 0.0028 6E-08 45.9 6.7 49 156-205 5-53 (68)
195 PF14559 TPR_19: Tetratricopep 97.0 0.0024 5.3E-08 46.2 6.4 50 401-451 4-53 (68)
196 PF04840 Vps16_C: Vps16, C-ter 97.0 0.38 8.2E-06 46.9 26.8 110 390-519 179-288 (319)
197 KOG1538 Uncharacterized conser 97.0 0.19 4.1E-06 51.6 20.9 88 387-485 746-844 (1081)
198 PF12688 TPR_5: Tetratrico pep 97.0 0.059 1.3E-06 43.8 14.6 55 151-205 10-66 (120)
199 PRK10803 tol-pal system protei 96.9 0.029 6.3E-07 52.9 14.4 89 434-524 154-248 (263)
200 KOG1130 Predicted G-alpha GTPa 96.9 0.015 3.3E-07 56.0 12.1 131 355-485 197-342 (639)
201 PF04840 Vps16_C: Vps16, C-ter 96.9 0.47 1E-05 46.2 30.5 110 284-413 178-287 (319)
202 KOG1130 Predicted G-alpha GTPa 96.9 0.01 2.2E-07 57.0 10.7 265 79-343 24-340 (639)
203 PF07079 DUF1347: Protein of u 96.8 0.61 1.3E-05 46.1 44.0 427 82-521 16-523 (549)
204 KOG1538 Uncharacterized conser 96.8 0.25 5.4E-06 50.7 19.6 100 74-202 558-657 (1081)
205 PRK15331 chaperone protein Sic 96.7 0.11 2.5E-06 44.1 14.8 87 398-486 47-133 (165)
206 PF03704 BTAD: Bacterial trans 96.7 0.051 1.1E-06 46.5 13.3 69 426-495 65-138 (146)
207 PF13371 TPR_9: Tetratricopept 96.7 0.012 2.6E-07 43.2 8.0 56 396-452 3-58 (73)
208 PRK10803 tol-pal system protei 96.6 0.039 8.5E-07 52.1 12.8 94 391-486 146-245 (263)
209 KOG2796 Uncharacterized conser 96.5 0.64 1.4E-05 42.5 23.8 132 320-452 179-315 (366)
210 COG3898 Uncharacterized membra 96.5 0.91 2E-05 44.0 30.9 145 368-522 244-392 (531)
211 PF13525 YfiO: Outer membrane 96.5 0.42 9.2E-06 43.4 18.2 23 254-276 147-169 (203)
212 PF13525 YfiO: Outer membrane 96.4 0.35 7.5E-06 44.0 17.3 58 254-311 11-70 (203)
213 PF13371 TPR_9: Tetratricopept 96.4 0.024 5.1E-07 41.6 7.9 61 431-494 3-63 (73)
214 PF03704 BTAD: Bacterial trans 96.4 0.038 8.3E-07 47.3 10.2 74 388-462 62-140 (146)
215 KOG2280 Vacuolar assembly/sort 96.3 1.9 4.1E-05 45.6 27.5 346 134-519 424-796 (829)
216 PRK11906 transcriptional regul 96.1 0.46 9.9E-06 47.7 17.1 146 369-520 274-434 (458)
217 PF13424 TPR_12: Tetratricopep 96.1 0.024 5.1E-07 42.3 6.4 60 390-449 7-72 (78)
218 PF13281 DUF4071: Domain of un 96.0 1.8 3.9E-05 42.8 20.5 26 461-486 308-333 (374)
219 PF13281 DUF4071: Domain of un 96.0 1.3 2.7E-05 43.9 19.4 163 358-522 146-334 (374)
220 PF13431 TPR_17: Tetratricopep 96.0 0.00083 1.8E-08 40.5 -1.4 32 539-572 2-33 (34)
221 KOG3941 Intermediate in Toll s 96.0 0.19 4.2E-06 46.2 12.6 34 476-509 141-174 (406)
222 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.29 6.4E-06 48.9 15.0 68 67-136 70-141 (453)
223 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.081 1.8E-06 52.7 11.2 99 385-489 72-176 (453)
224 PRK15331 chaperone protein Sic 95.9 0.13 2.8E-06 43.8 10.8 92 429-522 43-134 (165)
225 KOG1258 mRNA processing protei 95.9 2.5 5.4E-05 43.7 34.0 389 72-474 45-491 (577)
226 PF13424 TPR_12: Tetratricopep 95.8 0.033 7E-07 41.5 6.2 26 425-450 7-32 (78)
227 COG3898 Uncharacterized membra 95.8 2.2 4.7E-05 41.6 32.0 311 87-422 68-397 (531)
228 COG1729 Uncharacterized protei 95.7 0.24 5.3E-06 45.8 12.5 100 425-525 144-247 (262)
229 PF09205 DUF1955: Domain of un 95.7 0.92 2E-05 36.8 14.2 66 389-455 87-152 (161)
230 COG5107 RNA14 Pre-mRNA 3'-end 95.6 2.6 5.7E-05 41.8 35.9 402 93-522 30-495 (660)
231 PF12921 ATP13: Mitochondrial 95.6 0.25 5.5E-06 40.5 11.0 51 173-223 48-98 (126)
232 PF10300 DUF3808: Protein of u 95.5 1.2 2.6E-05 46.3 18.5 120 401-523 246-377 (468)
233 COG3118 Thioredoxin domain-con 95.4 2.4 5.3E-05 39.8 17.9 144 151-298 143-287 (304)
234 KOG0543 FKBP-type peptidyl-pro 95.3 0.53 1.1E-05 46.0 13.8 139 79-241 215-354 (397)
235 KOG1585 Protein required for f 95.3 2.1 4.6E-05 38.8 16.6 25 144-168 93-117 (308)
236 PF12921 ATP13: Mitochondrial 95.3 0.4 8.6E-06 39.4 11.4 54 453-506 47-101 (126)
237 KOG4555 TPR repeat-containing 95.3 0.73 1.6E-05 37.2 12.0 93 79-172 50-145 (175)
238 KOG2280 Vacuolar assembly/sort 95.3 4.9 0.00011 42.7 33.6 322 170-522 425-773 (829)
239 KOG0543 FKBP-type peptidyl-pro 95.3 0.58 1.3E-05 45.8 13.9 95 425-522 259-355 (397)
240 KOG2114 Vacuolar assembly/sort 95.0 6.4 0.00014 42.5 21.5 177 74-274 336-516 (933)
241 PRK11906 transcriptional regul 95.0 0.86 1.9E-05 45.8 14.5 120 403-525 273-404 (458)
242 smart00299 CLH Clathrin heavy 95.0 1.6 3.5E-05 36.8 14.7 42 77-119 12-53 (140)
243 smart00299 CLH Clathrin heavy 94.9 1.1 2.5E-05 37.7 13.7 43 358-401 12-54 (140)
244 COG3118 Thioredoxin domain-con 94.9 1.7 3.8E-05 40.8 15.3 154 114-271 141-295 (304)
245 KOG1920 IkappaB kinase complex 94.9 7.7 0.00017 43.7 22.3 109 391-519 942-1052(1265)
246 KOG1941 Acetylcholine receptor 94.9 1.1 2.3E-05 43.1 14.0 127 357-484 126-272 (518)
247 PF10300 DUF3808: Protein of u 94.8 3.1 6.8E-05 43.3 19.0 130 145-277 191-334 (468)
248 PF04053 Coatomer_WDAD: Coatom 94.7 1.1 2.4E-05 45.9 15.1 157 79-272 268-426 (443)
249 KOG1941 Acetylcholine receptor 94.7 1.5 3.3E-05 42.1 14.4 166 354-520 84-273 (518)
250 PF04184 ST7: ST7 protein; In 94.7 2.2 4.9E-05 43.1 16.3 58 427-484 263-321 (539)
251 COG0457 NrfG FOG: TPR repeat [ 94.6 3.5 7.7E-05 37.8 30.7 124 397-522 139-265 (291)
252 KOG4555 TPR repeat-containing 94.6 0.81 1.8E-05 37.0 10.5 89 398-488 53-145 (175)
253 PF13428 TPR_14: Tetratricopep 94.3 0.18 3.8E-06 32.5 5.5 27 391-417 4-30 (44)
254 KOG2610 Uncharacterized conser 94.2 1.5 3.2E-05 41.7 13.2 156 117-275 113-274 (491)
255 KOG3941 Intermediate in Toll s 94.2 1 2.2E-05 41.7 11.8 82 124-205 89-187 (406)
256 PF04184 ST7: ST7 protein; In 94.1 5.7 0.00012 40.3 17.8 151 77-242 173-324 (539)
257 PF04053 Coatomer_WDAD: Coatom 94.1 1.5 3.2E-05 45.1 14.4 131 75-239 298-428 (443)
258 KOG1585 Protein required for f 94.1 4.6 0.0001 36.8 17.0 86 109-204 33-118 (308)
259 COG0457 NrfG FOG: TPR repeat [ 93.8 5.3 0.00012 36.5 33.4 199 284-486 60-264 (291)
260 PF07079 DUF1347: Protein of u 93.7 8.3 0.00018 38.6 41.7 408 75-498 49-530 (549)
261 PF13428 TPR_14: Tetratricopep 93.6 0.27 5.8E-06 31.6 5.4 27 180-206 4-30 (44)
262 PF13170 DUF4003: Protein of u 93.4 7.8 0.00017 37.4 17.7 130 370-501 79-225 (297)
263 PF13512 TPR_18: Tetratricopep 93.3 2.8 6.1E-05 35.0 12.0 58 79-136 17-76 (142)
264 KOG1550 Extracellular protein 93.2 14 0.0003 39.6 24.7 178 193-383 228-427 (552)
265 COG1729 Uncharacterized protei 93.1 1.6 3.4E-05 40.6 11.4 98 144-242 144-244 (262)
266 COG3629 DnrI DNA-binding trans 93.0 1.3 2.8E-05 41.8 11.0 77 390-467 155-236 (280)
267 KOG2610 Uncharacterized conser 92.8 3 6.5E-05 39.8 12.7 151 295-449 115-273 (491)
268 COG4649 Uncharacterized protei 92.4 6.5 0.00014 33.8 14.1 54 153-206 69-123 (221)
269 PF09613 HrpB1_HrpK: Bacterial 92.4 6.3 0.00014 33.6 13.7 52 154-206 22-73 (160)
270 COG3629 DnrI DNA-binding trans 92.1 1.9 4.2E-05 40.7 10.8 79 423-502 153-236 (280)
271 PF13512 TPR_18: Tetratricopep 92.1 5.4 0.00012 33.3 12.1 81 109-190 12-95 (142)
272 COG4785 NlpI Lipoprotein NlpI, 91.9 9.1 0.0002 34.3 15.6 162 139-312 96-266 (297)
273 COG4105 ComL DNA uptake lipopr 91.6 11 0.00024 34.8 20.1 55 258-312 44-100 (254)
274 COG4105 ComL DNA uptake lipopr 91.6 11 0.00024 34.8 21.7 52 119-171 46-100 (254)
275 PF06552 TOM20_plant: Plant sp 91.4 1.5 3.3E-05 37.9 8.4 61 439-503 51-123 (186)
276 PF09205 DUF1955: Domain of un 91.3 7.1 0.00015 31.9 13.5 66 213-279 86-151 (161)
277 KOG1258 mRNA processing protei 91.2 21 0.00045 37.3 35.5 389 106-508 44-490 (577)
278 COG4649 Uncharacterized protei 91.0 9.6 0.00021 32.8 15.9 123 83-205 69-195 (221)
279 PF08631 SPO22: Meiosis protei 90.7 16 0.00035 35.1 26.5 163 354-519 85-272 (278)
280 KOG4648 Uncharacterized conser 90.7 0.68 1.5E-05 44.0 6.2 49 432-482 106-155 (536)
281 PF13176 TPR_7: Tetratricopept 90.7 0.63 1.4E-05 28.3 4.2 24 426-449 2-25 (36)
282 PF13431 TPR_17: Tetratricopep 90.5 0.37 8E-06 28.9 2.9 23 420-442 10-32 (34)
283 PF00515 TPR_1: Tetratricopept 90.2 0.76 1.6E-05 27.3 4.3 27 425-451 3-29 (34)
284 PF10602 RPN7: 26S proteasome 90.2 4.3 9.3E-05 35.8 10.7 96 424-521 37-141 (177)
285 PF08631 SPO22: Meiosis protei 90.2 18 0.00039 34.7 26.1 162 320-484 86-272 (278)
286 PF02259 FAT: FAT domain; Int 89.5 24 0.00052 35.2 21.3 65 387-451 145-212 (352)
287 PF13176 TPR_7: Tetratricopept 89.3 0.89 1.9E-05 27.6 4.1 25 75-99 2-26 (36)
288 KOG2396 HAT (Half-A-TPR) repea 89.2 28 0.00061 35.5 35.6 78 70-149 103-181 (568)
289 PRK09687 putative lyase; Provi 89.1 22 0.00048 34.1 29.1 120 352-485 141-261 (280)
290 PF00515 TPR_1: Tetratricopept 87.9 1.3 2.8E-05 26.3 4.1 27 460-486 3-29 (34)
291 PF07719 TPR_2: Tetratricopept 87.8 1.4 3E-05 26.0 4.3 26 426-451 4-29 (34)
292 PF10602 RPN7: 26S proteasome 87.7 9.4 0.0002 33.7 11.0 58 252-309 40-99 (177)
293 KOG4234 TPR repeat-containing 87.3 13 0.00028 32.9 11.1 87 398-486 105-196 (271)
294 PF04097 Nic96: Nup93/Nic96; 87.0 34 0.00073 37.2 16.9 222 290-520 265-532 (613)
295 PF07719 TPR_2: Tetratricopept 87.0 2 4.4E-05 25.3 4.7 28 495-522 3-30 (34)
296 PF07035 Mic1: Colon cancer-as 86.9 20 0.00042 31.1 15.0 98 96-203 18-115 (167)
297 PF13170 DUF4003: Protein of u 86.8 31 0.00068 33.4 20.5 21 302-322 81-101 (297)
298 COG4785 NlpI Lipoprotein NlpI, 86.4 24 0.00053 31.7 15.7 29 354-382 238-266 (297)
299 KOG1920 IkappaB kinase complex 86.2 68 0.0015 36.7 25.7 78 325-413 972-1051(1265)
300 PF09613 HrpB1_HrpK: Bacterial 85.9 21 0.00046 30.5 14.0 52 399-452 21-73 (160)
301 PF00637 Clathrin: Region in C 85.5 0.022 4.7E-07 48.6 -6.6 128 78-228 13-140 (143)
302 KOG4570 Uncharacterized conser 85.5 11 0.00025 35.7 10.5 49 368-416 115-163 (418)
303 KOG2114 Vacuolar assembly/sort 85.2 64 0.0014 35.4 28.9 177 111-309 338-516 (933)
304 COG2909 MalT ATP-dependent tra 85.1 66 0.0014 35.6 25.3 90 153-242 426-526 (894)
305 cd00923 Cyt_c_Oxidase_Va Cytoc 85.0 4.2 9E-05 31.1 6.1 50 473-522 22-71 (103)
306 PF13374 TPR_10: Tetratricopep 83.9 2.5 5.4E-05 26.4 4.2 28 73-100 3-30 (42)
307 PF07035 Mic1: Colon cancer-as 83.9 28 0.00061 30.2 15.7 130 129-273 16-145 (167)
308 KOG0276 Vesicle coat complex C 83.7 29 0.00063 36.3 13.2 150 83-273 597-746 (794)
309 TIGR02561 HrpB1_HrpK type III 83.7 25 0.00055 29.6 12.4 51 155-206 23-73 (153)
310 PF13374 TPR_10: Tetratricopep 83.3 3.1 6.8E-05 25.9 4.5 27 424-450 3-29 (42)
311 KOG0276 Vesicle coat complex C 83.2 31 0.00068 36.0 13.3 132 74-239 616-747 (794)
312 PF02284 COX5A: Cytochrome c o 82.8 4.9 0.00011 31.0 5.8 47 476-522 28-74 (108)
313 PF11207 DUF2989: Protein of u 82.0 15 0.00031 32.8 9.3 18 457-474 177-194 (203)
314 cd00923 Cyt_c_Oxidase_Va Cytoc 81.5 12 0.00026 28.7 7.3 45 125-169 25-69 (103)
315 PRK09687 putative lyase; Provi 81.5 52 0.0011 31.6 29.1 22 429-451 241-262 (280)
316 PF11207 DUF2989: Protein of u 81.4 16 0.00035 32.5 9.4 72 370-442 123-197 (203)
317 KOG1464 COP9 signalosome, subu 81.1 48 0.001 30.9 18.3 91 359-449 151-257 (440)
318 PF13181 TPR_8: Tetratricopept 80.7 2.8 6.1E-05 24.7 3.4 26 426-451 4-29 (34)
319 KOG4570 Uncharacterized conser 80.4 15 0.00033 34.9 9.2 103 172-276 59-163 (418)
320 KOG4234 TPR repeat-containing 80.0 28 0.00061 30.9 10.1 54 397-451 143-196 (271)
321 PRK15180 Vi polysaccharide bio 79.4 77 0.0017 32.3 14.1 121 189-313 301-421 (831)
322 COG3947 Response regulator con 79.4 58 0.0013 30.9 14.7 55 254-309 285-339 (361)
323 PF06552 TOM20_plant: Plant sp 79.4 43 0.00092 29.3 11.1 77 405-490 52-139 (186)
324 KOG2396 HAT (Half-A-TPR) repea 79.0 82 0.0018 32.4 37.0 67 105-172 103-170 (568)
325 KOG1550 Extracellular protein 78.9 99 0.0021 33.2 26.4 144 124-278 229-394 (552)
326 PF04097 Nic96: Nup93/Nic96; 78.6 1.1E+02 0.0023 33.5 22.4 222 71-312 111-356 (613)
327 KOG0403 Neoplastic transformat 78.2 81 0.0018 31.9 16.5 72 357-433 513-584 (645)
328 PF13181 TPR_8: Tetratricopept 77.9 7.1 0.00015 22.9 4.6 28 495-522 3-30 (34)
329 COG2976 Uncharacterized protei 77.8 51 0.0011 29.3 14.0 89 220-312 96-188 (207)
330 KOG4648 Uncharacterized conser 77.5 17 0.00037 34.9 8.8 89 361-451 105-193 (536)
331 PF02284 COX5A: Cytochrome c o 77.4 12 0.00026 29.0 6.4 41 165-205 33-73 (108)
332 PF10345 Cohesin_load: Cohesin 76.8 1.2E+02 0.0026 33.1 42.2 439 70-519 28-603 (608)
333 PF13174 TPR_6: Tetratricopept 76.8 4.9 0.00011 23.3 3.6 28 497-524 4-31 (33)
334 KOG4279 Serine/threonine prote 75.8 32 0.00069 36.9 10.9 176 354-547 202-397 (1226)
335 KOG4642 Chaperone-dependent E3 74.6 67 0.0015 29.6 11.2 80 366-449 23-104 (284)
336 KOG2066 Vacuolar assembly/sort 74.2 1.4E+02 0.003 32.6 27.4 102 79-189 363-467 (846)
337 KOG0890 Protein kinase of the 73.9 2.5E+02 0.0053 35.3 25.9 322 77-418 1388-1732(2382)
338 PF07721 TPR_4: Tetratricopept 73.6 5.3 0.00011 22.0 2.8 21 76-96 5-25 (26)
339 KOG2471 TPR repeat-containing 73.6 58 0.0013 33.3 11.6 109 396-506 248-382 (696)
340 PF13174 TPR_6: Tetratricopept 73.3 6.6 0.00014 22.7 3.5 19 432-450 9-27 (33)
341 PF02259 FAT: FAT domain; Int 73.3 1E+02 0.0022 30.6 26.3 64 318-381 146-212 (352)
342 TIGR03504 FimV_Cterm FimV C-te 72.5 8.3 0.00018 24.7 3.9 25 78-102 5-29 (44)
343 KOG1464 COP9 signalosome, subu 72.5 85 0.0018 29.4 19.4 91 287-378 149-256 (440)
344 COG4455 ImpE Protein of avirul 71.8 31 0.00067 31.1 8.4 76 356-432 4-81 (273)
345 PF00637 Clathrin: Region in C 71.7 0.96 2.1E-05 38.3 -0.7 50 433-482 17-66 (143)
346 COG1747 Uncharacterized N-term 71.7 1.3E+02 0.0028 31.1 25.2 165 281-452 64-234 (711)
347 COG2976 Uncharacterized protei 71.6 74 0.0016 28.3 15.5 88 361-453 97-189 (207)
348 TIGR02561 HrpB1_HrpK type III 70.9 64 0.0014 27.3 12.7 52 400-453 22-74 (153)
349 PF13929 mRNA_stabil: mRNA sta 70.1 1E+02 0.0022 29.4 17.7 63 245-307 199-262 (292)
350 COG5159 RPN6 26S proteasome re 69.6 92 0.002 29.5 11.2 53 77-129 8-67 (421)
351 COG2909 MalT ATP-dependent tra 69.4 1.9E+02 0.0042 32.2 27.8 226 258-483 425-684 (894)
352 PF13762 MNE1: Mitochondrial s 69.1 70 0.0015 27.0 10.2 82 425-506 41-128 (145)
353 KOG4077 Cytochrome c oxidase, 67.1 24 0.00052 28.6 6.1 47 476-522 67-113 (149)
354 TIGR03504 FimV_Cterm FimV C-te 66.9 14 0.0003 23.7 4.0 23 394-416 5-27 (44)
355 COG4455 ImpE Protein of avirul 65.5 50 0.0011 29.9 8.4 72 395-467 8-81 (273)
356 PF10579 Rapsyn_N: Rapsyn N-te 65.2 24 0.00052 26.0 5.3 48 470-517 18-67 (80)
357 PF07163 Pex26: Pex26 protein; 63.6 1.1E+02 0.0024 28.9 10.6 87 325-411 90-181 (309)
358 PF08424 NRDE-2: NRDE-2, neces 62.5 1.6E+02 0.0035 28.9 17.9 80 369-450 47-129 (321)
359 KOG3364 Membrane protein invol 62.4 75 0.0016 26.4 8.2 70 455-525 29-103 (149)
360 KOG0890 Protein kinase of the 62.1 4.2E+02 0.0091 33.5 33.3 322 182-522 1388-1731(2382)
361 PF10579 Rapsyn_N: Rapsyn N-te 60.6 25 0.00055 25.8 4.8 46 435-480 18-65 (80)
362 KOG2659 LisH motif-containing 60.2 88 0.0019 28.6 9.1 98 420-519 23-129 (228)
363 PRK10941 hypothetical protein; 59.1 1.7E+02 0.0036 27.9 11.5 60 181-242 185-244 (269)
364 PF07163 Pex26: Pex26 protein; 59.0 1.7E+02 0.0036 27.9 15.6 129 72-200 35-181 (309)
365 smart00028 TPR Tetratricopepti 59.0 17 0.00038 19.9 3.5 23 428-450 6-28 (34)
366 PF09986 DUF2225: Uncharacteri 58.9 1.3E+02 0.0028 27.5 10.4 88 435-522 89-194 (214)
367 PF13929 mRNA_stabil: mRNA sta 58.1 1.8E+02 0.0038 27.9 18.0 136 229-364 144-289 (292)
368 PRK11619 lytic murein transgly 58.0 2.9E+02 0.0063 30.4 34.0 381 79-493 106-511 (644)
369 KOG0376 Serine-threonine phosp 58.0 25 0.00054 35.7 5.9 104 362-470 13-117 (476)
370 PRK10941 hypothetical protein; 57.6 1.7E+02 0.0038 27.8 11.3 60 392-452 185-244 (269)
371 PRK11619 lytic murein transgly 56.0 3.1E+02 0.0068 30.1 39.4 313 80-415 41-373 (644)
372 PF11663 Toxin_YhaV: Toxin wit 55.2 14 0.00029 30.4 3.0 35 81-117 104-138 (140)
373 KOG2063 Vacuolar assembly/sort 54.5 3.7E+02 0.008 30.5 21.3 57 75-135 310-374 (877)
374 KOG4507 Uncharacterized conser 54.1 77 0.0017 33.2 8.6 102 331-434 620-721 (886)
375 TIGR02508 type_III_yscG type I 54.0 1E+02 0.0023 24.0 7.8 13 435-447 51-63 (115)
376 KOG2471 TPR repeat-containing 53.9 2.7E+02 0.0059 28.8 14.3 38 396-434 343-380 (696)
377 COG1747 Uncharacterized N-term 53.8 2.8E+02 0.0061 28.9 26.0 181 245-433 63-249 (711)
378 COG3947 Response regulator con 52.1 2.2E+02 0.0048 27.2 16.2 57 427-484 283-339 (361)
379 smart00777 Mad3_BUB1_I Mad3/BU 52.0 1.1E+02 0.0025 25.0 7.9 43 475-517 80-123 (125)
380 KOG4507 Uncharacterized conser 51.6 1.4E+02 0.003 31.5 9.9 149 211-362 569-719 (886)
381 PF14689 SPOB_a: Sensor_kinase 51.1 40 0.00087 23.6 4.5 21 429-449 29-49 (62)
382 KOG4077 Cytochrome c oxidase, 49.9 1.3E+02 0.0027 24.7 7.4 46 336-381 67-112 (149)
383 TIGR02508 type_III_yscG type I 49.6 1.2E+02 0.0027 23.6 8.3 12 154-165 51-62 (115)
384 KOG1308 Hsp70-interacting prot 49.5 21 0.00046 34.5 3.8 116 400-520 126-242 (377)
385 PF12862 Apc5: Anaphase-promot 48.6 1.2E+02 0.0026 23.3 7.4 23 183-205 47-69 (94)
386 COG4941 Predicted RNA polymera 47.8 2.8E+02 0.0061 27.2 11.2 115 404-522 272-394 (415)
387 PF07575 Nucleopor_Nup85: Nup8 47.1 4E+02 0.0087 28.8 16.5 77 338-416 390-466 (566)
388 PF11846 DUF3366: Domain of un 46.5 92 0.002 27.8 7.5 31 455-485 141-171 (193)
389 PF11848 DUF3368: Domain of un 46.5 75 0.0016 20.8 5.0 32 469-500 13-44 (48)
390 COG3825 Uncharacterized protei 46.3 87 0.0019 29.9 7.0 132 444-597 4-137 (393)
391 PF08424 NRDE-2: NRDE-2, neces 46.2 3E+02 0.0065 27.1 19.4 61 160-223 49-109 (321)
392 PRK15180 Vi polysaccharide bio 45.6 3.6E+02 0.0078 27.8 27.8 125 79-207 296-421 (831)
393 PF11846 DUF3366: Domain of un 43.7 1.1E+02 0.0025 27.2 7.6 30 211-240 142-171 (193)
394 PF14853 Fis1_TPR_C: Fis1 C-te 43.1 1E+02 0.0022 20.8 5.3 20 432-451 10-29 (53)
395 KOG2062 26S proteasome regulat 42.6 5E+02 0.011 28.6 26.5 27 216-242 213-239 (929)
396 KOG0376 Serine-threonine phosp 42.5 61 0.0013 33.1 5.9 107 325-436 11-118 (476)
397 KOG0687 26S proteasome regulat 42.5 3.4E+02 0.0073 26.5 14.8 38 214-251 105-146 (393)
398 PF12862 Apc5: Anaphase-promot 42.4 1.5E+02 0.0033 22.7 7.1 22 464-485 47-68 (94)
399 PRK13800 putative oxidoreducta 42.3 6E+02 0.013 29.4 30.8 48 104-155 632-679 (897)
400 PF14689 SPOB_a: Sensor_kinase 41.8 78 0.0017 22.1 4.8 20 254-273 29-48 (62)
401 PF11663 Toxin_YhaV: Toxin wit 41.6 27 0.00059 28.7 2.8 21 437-457 109-129 (140)
402 PHA02537 M terminase endonucle 41.3 2E+02 0.0044 26.5 8.6 30 495-524 171-209 (230)
403 COG2178 Predicted RNA-binding 40.7 2.7E+02 0.0058 24.9 10.1 18 503-520 131-148 (204)
404 KOG0686 COP9 signalosome, subu 40.6 4E+02 0.0087 26.9 15.1 61 75-135 153-215 (466)
405 KOG2908 26S proteasome regulat 40.4 3.6E+02 0.0077 26.5 10.2 80 391-470 78-168 (380)
406 PF14561 TPR_20: Tetratricopep 39.8 1.7E+02 0.0037 22.3 9.3 54 139-192 19-73 (90)
407 COG5187 RPN7 26S proteasome re 39.6 3.5E+02 0.0075 25.9 12.7 67 388-454 115-186 (412)
408 PF11848 DUF3368: Domain of un 39.5 1.1E+02 0.0024 20.0 5.2 32 434-465 13-44 (48)
409 PRK13800 putative oxidoreducta 39.0 6.7E+02 0.015 29.0 29.7 261 211-503 633-894 (897)
410 PF09670 Cas_Cas02710: CRISPR- 38.9 4.3E+02 0.0093 26.8 12.3 54 116-170 140-197 (379)
411 PRK10564 maltose regulon perip 38.5 74 0.0016 30.5 5.5 36 426-461 260-295 (303)
412 KOG3364 Membrane protein invol 38.4 2.4E+02 0.0051 23.6 9.8 48 439-486 51-99 (149)
413 PF04190 DUF410: Protein of un 38.1 3.6E+02 0.0077 25.6 18.5 25 387-411 89-113 (260)
414 PF13762 MNE1: Mitochondrial s 37.9 2.5E+02 0.0054 23.8 10.6 81 109-189 41-127 (145)
415 PF14853 Fis1_TPR_C: Fis1 C-te 37.8 1.3E+02 0.0027 20.3 6.0 20 467-486 10-29 (53)
416 KOG2908 26S proteasome regulat 37.0 4.2E+02 0.009 26.1 10.7 69 357-425 79-157 (380)
417 PF15297 CKAP2_C: Cytoskeleton 37.0 4E+02 0.0088 26.3 10.2 63 405-469 120-186 (353)
418 PHA02875 ankyrin repeat protei 36.6 4.8E+02 0.01 26.6 14.0 12 256-267 140-151 (413)
419 KOG1308 Hsp70-interacting prot 36.4 46 0.001 32.3 3.8 116 365-485 126-242 (377)
420 PF07575 Nucleopor_Nup85: Nup8 36.0 5.9E+02 0.013 27.5 19.0 26 142-168 149-174 (566)
421 PHA02875 ankyrin repeat protei 36.0 4.9E+02 0.011 26.5 13.8 76 223-306 9-88 (413)
422 COG0790 FOG: TPR repeat, SEL1 35.8 4E+02 0.0087 25.5 24.6 149 85-243 54-221 (292)
423 PF09477 Type_III_YscG: Bacter 35.5 2.3E+02 0.0049 22.5 8.8 16 189-204 81-96 (116)
424 cd00280 TRFH Telomeric Repeat 35.0 2.8E+02 0.0062 24.5 7.9 20 432-451 120-139 (200)
425 COG0735 Fur Fe2+/Zn2+ uptake r 34.4 2.1E+02 0.0046 24.2 7.3 28 254-281 26-53 (145)
426 cd02679 MIT_spastin MIT: domai 34.3 35 0.00077 25.2 2.2 19 562-580 49-67 (79)
427 cd00280 TRFH Telomeric Repeat 34.0 3.1E+02 0.0068 24.3 8.0 23 394-416 117-139 (200)
428 PRK10564 maltose regulon perip 33.9 84 0.0018 30.1 5.1 30 216-245 260-289 (303)
429 PF14561 TPR_20: Tetratricopep 33.8 2.1E+02 0.0046 21.8 8.5 31 176-206 21-51 (90)
430 PF09670 Cas_Cas02710: CRISPR- 33.5 5.2E+02 0.011 26.2 12.7 52 399-451 142-197 (379)
431 KOG0991 Replication factor C, 33.2 4E+02 0.0087 24.7 16.1 37 456-493 237-273 (333)
432 PF08311 Mad3_BUB1_I: Mad3/BUB 32.9 2.8E+02 0.006 22.8 9.0 43 195-237 81-123 (126)
433 smart00386 HAT HAT (Half-A-TPR 32.2 96 0.0021 17.3 4.0 13 404-416 3-15 (33)
434 PF11817 Foie-gras_1: Foie gra 31.9 2.5E+02 0.0054 26.4 8.1 58 217-274 182-244 (247)
435 KOG3807 Predicted membrane pro 31.8 5E+02 0.011 25.4 13.7 19 188-206 286-304 (556)
436 PHA02537 M terminase endonucle 31.6 2.7E+02 0.0058 25.8 7.8 14 473-486 193-206 (230)
437 PF04762 IKI3: IKI3 family; I 31.6 6E+02 0.013 29.5 12.3 115 387-519 811-927 (928)
438 COG0790 FOG: TPR repeat, SEL1 31.5 4.7E+02 0.01 25.0 24.6 45 266-313 173-221 (292)
439 KOG2062 26S proteasome regulat 31.3 7.5E+02 0.016 27.3 24.2 24 288-311 215-238 (929)
440 COG5159 RPN6 26S proteasome re 31.2 4.8E+02 0.01 25.0 15.1 18 324-341 131-148 (421)
441 KOG4567 GTPase-activating prot 31.0 5E+02 0.011 25.2 9.6 56 409-469 264-319 (370)
442 PF10366 Vps39_1: Vacuolar sor 29.8 2.9E+02 0.0062 22.0 9.0 26 251-276 42-67 (108)
443 KOG2063 Vacuolar assembly/sort 29.6 8.9E+02 0.019 27.7 20.3 26 75-100 507-532 (877)
444 PF11817 Foie-gras_1: Foie gra 29.1 2.7E+02 0.0059 26.1 7.9 56 253-308 183-243 (247)
445 PF08311 Mad3_BUB1_I: Mad3/BUB 28.8 3.3E+02 0.0071 22.3 8.8 43 231-273 81-124 (126)
446 COG0735 Fur Fe2+/Zn2+ uptake r 28.7 3.6E+02 0.0078 22.8 8.2 64 445-509 8-71 (145)
447 PF09477 Type_III_YscG: Bacter 28.3 3.1E+02 0.0067 21.8 8.8 15 365-379 81-95 (116)
448 PF10475 DUF2450: Protein of u 27.3 5.7E+02 0.012 24.7 10.3 26 490-515 194-219 (291)
449 PF02184 HAT: HAT (Half-A-TPR) 27.3 1.4E+02 0.0031 17.7 3.5 22 439-462 3-24 (32)
450 KOG0687 26S proteasome regulat 27.1 6.1E+02 0.013 24.9 14.9 95 249-345 105-208 (393)
451 COG5187 RPN7 26S proteasome re 27.0 5.7E+02 0.012 24.5 14.2 67 213-279 115-186 (412)
452 KOG0551 Hsp90 co-chaperone CNS 26.4 3.3E+02 0.0072 26.7 7.6 94 389-484 82-179 (390)
453 PF14432 DYW_deaminase: DYW fa 26.1 27 0.00058 28.2 0.5 9 588-600 2-10 (116)
454 PF10255 Paf67: RNA polymerase 26.1 4.2E+02 0.0091 27.0 8.8 26 179-204 166-191 (404)
455 PF10475 DUF2450: Protein of u 25.8 6.1E+02 0.013 24.5 10.3 23 281-303 195-217 (291)
456 COG5108 RPO41 Mitochondrial DN 25.6 4.9E+02 0.011 28.2 9.2 75 112-189 33-115 (1117)
457 PF09454 Vps23_core: Vps23 cor 25.6 2.1E+02 0.0045 20.3 4.7 27 391-417 11-37 (65)
458 cd08819 CARD_MDA5_2 Caspase ac 25.4 3.1E+02 0.0066 20.9 7.4 64 443-512 22-85 (88)
459 PF00244 14-3-3: 14-3-3 protei 25.3 5.6E+02 0.012 23.9 10.3 166 321-486 4-197 (236)
460 KOG2659 LisH motif-containing 25.2 5.5E+02 0.012 23.7 10.0 64 210-275 23-91 (228)
461 PF04910 Tcf25: Transcriptiona 25.1 7.1E+02 0.015 25.0 20.9 99 106-204 39-166 (360)
462 PF09454 Vps23_core: Vps23 cor 24.9 2.1E+02 0.0045 20.3 4.6 22 78-99 14-35 (65)
463 PRK13342 recombination factor 24.5 7.8E+02 0.017 25.2 18.7 36 437-472 244-279 (413)
464 smart00804 TAP_C C-terminal do 24.4 61 0.0013 22.8 1.9 21 192-212 40-60 (63)
465 KOG2034 Vacuolar sorting prote 24.4 1.1E+03 0.023 26.8 29.1 134 252-404 508-644 (911)
466 PRK11639 zinc uptake transcrip 24.4 4.8E+02 0.01 22.7 8.2 59 450-509 18-76 (169)
467 KOG4814 Uncharacterized conser 23.9 9.2E+02 0.02 26.2 10.7 93 355-450 357-455 (872)
468 COG4941 Predicted RNA polymera 23.6 7.2E+02 0.016 24.5 11.8 115 158-277 272-394 (415)
469 PRK09462 fur ferric uptake reg 23.4 4.6E+02 0.0099 22.2 8.1 60 449-509 8-68 (148)
470 PF09986 DUF2225: Uncharacteri 23.3 5.8E+02 0.013 23.3 11.6 62 427-488 122-195 (214)
471 KOG1586 Protein required for f 23.2 6.2E+02 0.013 23.6 21.2 54 398-451 164-223 (288)
472 PF12793 SgrR_N: Sugar transpo 23.1 4E+02 0.0087 21.5 7.1 62 455-518 16-95 (115)
473 cd08819 CARD_MDA5_2 Caspase ac 22.8 3.5E+02 0.0075 20.6 7.5 14 156-169 50-63 (88)
474 KOG4642 Chaperone-dependent E3 22.7 6.4E+02 0.014 23.6 11.6 114 121-238 24-142 (284)
475 KOG3807 Predicted membrane pro 22.5 7.4E+02 0.016 24.3 15.5 19 399-417 286-304 (556)
476 PF09868 DUF2095: Uncharacteri 22.5 3.7E+02 0.0081 21.5 5.9 31 394-425 67-97 (128)
477 cd07153 Fur_like Ferric uptake 22.1 2.6E+02 0.0055 22.3 5.6 45 78-122 6-50 (116)
478 COG4259 Uncharacterized protei 22.0 3.9E+02 0.0085 20.9 6.5 16 468-483 82-97 (121)
479 COG4003 Uncharacterized protei 21.6 3.5E+02 0.0075 20.1 5.5 25 394-418 37-61 (98)
480 KOG2066 Vacuolar assembly/sort 21.5 1.2E+03 0.025 26.1 28.2 99 117-225 366-467 (846)
481 COG5191 Uncharacterized conser 21.3 2.9E+02 0.0063 26.7 6.1 65 387-452 106-171 (435)
482 KOG4814 Uncharacterized conser 21.1 7.7E+02 0.017 26.7 9.5 86 398-485 364-455 (872)
483 KOG4521 Nuclear pore complex, 20.9 1.4E+03 0.031 27.0 14.7 123 179-305 985-1124(1480)
484 KOG2582 COP9 signalosome, subu 20.9 8.5E+02 0.018 24.3 16.8 16 330-345 195-210 (422)
485 cd07153 Fur_like Ferric uptake 20.7 3.3E+02 0.0071 21.7 5.9 45 464-508 6-50 (116)
486 KOG3636 Uncharacterized conser 20.5 9.3E+02 0.02 24.7 14.5 89 345-434 175-271 (669)
487 PF08195 TRI9: TRI9 protein; 20.2 43 0.00093 20.1 0.4 14 582-595 10-23 (43)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.4e-80 Score=691.96 Aligned_cols=527 Identities=17% Similarity=0.238 Sum_probs=502.6
Q ss_pred ccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006636 67 ESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
+..+++.++|.|+.+|++.|++++|.++|++|. .||..+||++|.+|++.|++++|..+|++|.+.|+.||..+|+
T Consensus 217 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~ 292 (857)
T PLN03077 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292 (857)
T ss_pred CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHH
Confidence 445788899999999999999999999999996 5799999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 006636 147 AVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNE 226 (637)
Q Consensus 147 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 226 (637)
.++.+|++.|+++.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.
T Consensus 293 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGYEKN 367 (857)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999996 37899999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006636 227 KNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFA 306 (637)
Q Consensus 227 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 306 (637)
|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.|+++|++.|++++|.++|
T Consensus 368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 006636 307 RTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKP 386 (637)
Q Consensus 307 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 386 (637)
++|. .+|..+|+.++.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++.|.++.+.+++..+.+.|+.+
T Consensus 448 ~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~ 522 (857)
T PLN03077 448 HNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF 522 (857)
T ss_pred HhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc
Confidence 9997 57889999999999999999999999999986 589999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006636 387 DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMW 466 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 466 (637)
|..++++|+++|+++|++++|.++|+++ .||..+|++||.+|+++|+.++|+++|++|.+.|+.||..||+.++.
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 597 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC 597 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Confidence 9999999999999999999999999987 68999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc---------ccccccccchH
Q 006636 467 GYSEARQPWRAEEILQIMK-AFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERT---------NEMEAEEDIPV 536 (637)
Q Consensus 467 ~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~---------~~~~~~~~~a~ 536 (637)
+|.+.|++++|.++|+.|. ++|+.|+..||.+++++|+++|++++|.+++++|+..... ...+++.++|+
T Consensus 598 a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e 677 (857)
T PLN03077 598 ACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGE 677 (857)
T ss_pred HHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Confidence 9999999999999999998 7999999999999999999999999999999999633111 13478999999
Q ss_pred HHHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhhhccccccCcccchhhhhcchhhhhccccCCCCCceecccc
Q 006636 537 ESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDADSSLECSWFATTSMYLSHSCKSGARLPIICQKQ 616 (637)
Q Consensus 537 ~~~e~~~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~~~~k~~g~swi~~~~~~~~~~~~~~~~~~~~~~~~ 616 (637)
.+++++++++|++.++ |+.|+|+|+..|+|++|.++|+.|+++|++|+|||||||++|++|. |+.+|+
T Consensus 678 ~~a~~l~~l~p~~~~~--y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~----------f~~~d~ 745 (857)
T PLN03077 678 LAAQHIFELDPNSVGY--YILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHA----------FLTDDE 745 (857)
T ss_pred HHHHHHHhhCCCCcch--HHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEE----------EecCCC
Confidence 9999999999998774 7889999999999999999999999999999999999999999999 677889
Q ss_pred CCcccccc
Q 006636 617 PLGQVGMY 624 (637)
Q Consensus 617 ~~~~~~~~ 624 (637)
+||+.+..
T Consensus 746 ~h~~~~~i 753 (857)
T PLN03077 746 SHPQIKEI 753 (857)
T ss_pred CCcchHHH
Confidence 99988643
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-72 Score=613.22 Aligned_cols=503 Identities=20% Similarity=0.302 Sum_probs=419.3
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006636 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGG-HKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAV 148 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (637)
.+..+|+.++..|.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+++.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 455678888888888888888888888887653 5678888888888888888888888888888888888888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 006636 149 INAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN 228 (637)
Q Consensus 149 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 228 (637)
+.+|++.|+++.|.++|++|.+ ||.++|+++|.+|++.|++++|+++|++|.+.| +.||..+|+.++.+|++.|.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g-~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDG-SDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCChhhHHHHHHHHhcCCc
Confidence 8888888888888888888864 688888888888888888888888888888776 67888888888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006636 229 ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFART 308 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 308 (637)
.+.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|+++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888753 5778888888888888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 006636 309 MKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA 388 (637)
Q Consensus 309 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 388 (637)
|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+++.|+.+|++.|++++|.++|++|. .||.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCe
Confidence 888888888888888888888888888888888888888888888888888888888888888888888875 3677
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHH
Q 006636 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE-HGVSPNLKTFETLMWG 467 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~ 467 (637)
.+|++||.+|++.|+.++|.++|++|.+.|+.||..||++++.+|++.|++++|.++|++|.+ .|+.|+..+|+.++.+
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888875 5788888888888888
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccccccccchHHHHHHHHhhhc
Q 006636 468 YSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERTNEMEAEEDIPVESLERLYHKEA 547 (637)
Q Consensus 468 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~a~~~~e~~~~~~~ 547 (637)
|++.|++++|.+++++| ++.|+..+|..++.+|...|+++.|+.+++++ ++++|
T Consensus 472 l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l-----------------------~~~~p 525 (697)
T PLN03081 472 LGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKL-----------------------YGMGP 525 (697)
T ss_pred HHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH-----------------------hCCCC
Confidence 88888888888887654 57788888888888888888777777666554 44567
Q ss_pred cCCCCCCcccccccccccCCCchhhhhhhhccccccCcccchhhhhcchhhhhccccCCCCCceeccccCCccccc
Q 006636 548 TTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDADSSLECSWFATTSMYLSHSCKSGARLPIICQKQPLGQVGM 623 (637)
Q Consensus 548 ~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~~~~k~~g~swi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (637)
++.. .|+.|+|+|++.|+|++|.++++.|+++|++|.|||||||+++++|. |+.++++||+.+.
T Consensus 526 ~~~~--~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~----------f~~~d~~h~~~~~ 589 (697)
T PLN03081 526 EKLN--NYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHS----------FFSGDRLHPQSRE 589 (697)
T ss_pred CCCc--chHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEE----------EccCCCCCccHHH
Confidence 6543 35889999999999999999999999999999999999999999999 6677799998643
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-64 Score=551.20 Aligned_cols=510 Identities=20% Similarity=0.297 Sum_probs=455.1
Q ss_pred ccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006636 67 ESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGH-KPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFF 145 (637)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 145 (637)
...++...|..+++.+++.|++++|+++|++|...|+ .++..+++.++.+|.+.|..++|..+++.|.. ||..+|
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Ty 440 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTF 440 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHH
Confidence 3446788899999999999999999999999999886 46788888999999999999999999998863 899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 006636 146 NAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCN 225 (637)
Q Consensus 146 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 225 (637)
+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.| +.||..+|+.||.+|++
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-v~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-VEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999887 78999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCCCCChhhHHHHHHHHHhcCCHHHHH
Q 006636 226 EKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEH--NGVQPNGRTCGIIISGYCKEGKIKEAL 303 (637)
Q Consensus 226 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~ 303 (637)
.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .++.||..+|++++.+|++.|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999976 678999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 006636 304 RFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAG 383 (637)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 383 (637)
++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006636 384 IKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFET 463 (637)
Q Consensus 384 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 463 (637)
+.||..+|++|+.+|+++|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|+++|++|.+.|+.||..||+.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c-------------------CCHHHHHHHHHHHh
Q 006636 464 LMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRA----T-------------------GLTKEAKRILSKIK 520 (637)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~-------------------g~~~eA~~~~~~~~ 520 (637)
++.+|.+.|++++|.++|++|.+.|+.||..+|.+++++|.+ + +..++|..+|++|.
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~ 839 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI 839 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999877542 1 23579999999998
Q ss_pred hhhc--cc----------cccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCC-chhhhhhhhccccccCc
Q 006636 521 NKER--TN----------EMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKG-SAAALKKGRMLLRDADS 585 (637)
Q Consensus 521 ~~~~--~~----------~~~~~~~~a~~~~e~~~~~~~~~~~y~~~~~L~~~y~~~g~~-~~a~~~r~~~~~~~~~k 585 (637)
.... +. ...+..+.+....+.+. ..|....|.+|..|-+.+ |++ ++|..+.+.|..+|+.-
T Consensus 840 ~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p 913 (1060)
T PLN03218 840 SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG-ISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVP 913 (1060)
T ss_pred HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc-cCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCC
Confidence 6532 10 01122233323333221 233333332334343333 445 48999999999999854
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.8e-62 Score=535.46 Aligned_cols=446 Identities=20% Similarity=0.326 Sum_probs=335.8
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006636 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVI 149 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 149 (637)
++...++.++..|.+.|..++|+.+|+.|. .||..+|+.++.+|++.|+++.|..+|++|.+.|+.||..+|+.||
T Consensus 404 ~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI 479 (1060)
T PLN03218 404 MDKIYHAKFFKACKKQRAVKEAFRFAKLIR----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLI 479 (1060)
T ss_pred chHHHHHHHHHHHHHCCCHHHHHHHHHHcC----CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 455556666777777777777777777775 2777777777777777777777777777777777777777777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 006636 150 NAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNI 229 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 229 (637)
.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|...+ +.||..+|+.|+.+|++.|++
T Consensus 480 ~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G-v~PD~vTYnsLI~a~~k~G~~ 558 (1060)
T PLN03218 480 STCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN-VKPDRVVFNALISACGQSGAV 558 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCH
Confidence 7777777777777777777777777777777777777777777777777777777665 677777777777777777777
Q ss_pred HHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 006636 230 TEAWNVMHKMAA--SGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFAR 307 (637)
Q Consensus 230 ~~A~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 307 (637)
++|.++|++|.. .|+.||..+|++|+.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|+
T Consensus 559 deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~ 638 (1060)
T PLN03218 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD 638 (1060)
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 777777777765 466777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 006636 308 TMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD 387 (637)
Q Consensus 308 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 387 (637)
+|.+.|+.||..+|+.++.+|++.|+.++|.++++.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 639 eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd 718 (1060)
T PLN03218 639 DMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT 718 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006636 388 AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWG 467 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 467 (637)
..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|++++..
T Consensus 719 vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIgl 798 (1060)
T PLN03218 719 VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL 798 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777655
Q ss_pred HHh----c-------------------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006636 468 YSE----A-------------------RQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 468 ~~~----~-------------------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
|.+ . +..++|..+|++|.+.|+.||..+|..++..++..+..+.+..+++.|.
T Consensus 799 c~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~ 874 (1060)
T PLN03218 799 CLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG 874 (1060)
T ss_pred HHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc
Confidence 432 1 1235677777777777777777777777766667777777777776664
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8e-62 Score=541.55 Aligned_cols=441 Identities=20% Similarity=0.283 Sum_probs=353.9
Q ss_pred ccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006636 67 ESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
.+.+++++||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|...+++..+.+++..+.+.|+.||..+++
T Consensus 147 m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n 226 (857)
T PLN03077 147 MPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVN 226 (857)
T ss_pred CCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHh
Confidence 34577888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 006636 147 AVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNE 226 (637)
Q Consensus 147 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 226 (637)
.|+.+|+++|++++|.++|++|.+ ||.++||+||.+|++.|++++|+++|++|...| +.||..||+.++.+|++.
T Consensus 227 ~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-~~Pd~~ty~~ll~a~~~~ 301 (857)
T PLN03077 227 ALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELS-VDPDLMTITSVISACELL 301 (857)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhc
Confidence 888888888888888888888864 577888888888888888888888888888776 778888888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006636 227 KNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFA 306 (637)
Q Consensus 227 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 306 (637)
|+++.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|
T Consensus 302 g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf 377 (857)
T PLN03077 302 GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETY 377 (857)
T ss_pred CChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888875 367788888888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 006636 307 RTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKP 386 (637)
Q Consensus 307 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 386 (637)
++|.+.|+.||..+|+.++.+|++.|+.+.+.++++.+.+.|..++..+++.|+.+|++.|++++|.++|++|.+ +
T Consensus 378 ~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~ 453 (857)
T PLN03077 378 ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----K 453 (857)
T ss_pred HHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----C
Confidence 888888888888888888888888888888888888888888888888888888888888888888888887753 4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------------
Q 006636 387 DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGV------------ 454 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------------ 454 (637)
|..+|++++.+|++.|+.++|..+|++|.. ++.||..||++++.+|++.|+.+.+.+++..+.+.|+
T Consensus 454 d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~ 532 (857)
T PLN03077 454 DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLD 532 (857)
T ss_pred CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHH
Confidence 667777777777777777777777777765 3677777776666555554444444444444443333
Q ss_pred ------------------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006636 455 ------------------SPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 455 ------------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~ 516 (637)
.||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..+|..++.+|.+.|++++|.++|
T Consensus 533 ~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f 612 (857)
T PLN03077 533 LYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612 (857)
T ss_pred HHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHH
Confidence 35677777777777778888888888888877778888888888888888888888888888
Q ss_pred HHHhh
Q 006636 517 SKIKN 521 (637)
Q Consensus 517 ~~~~~ 521 (637)
++|..
T Consensus 613 ~~M~~ 617 (857)
T PLN03077 613 HSMEE 617 (857)
T ss_pred HHHHH
Confidence 87763
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3e-59 Score=508.63 Aligned_cols=440 Identities=18% Similarity=0.269 Sum_probs=416.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006636 104 KPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENG-MDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNT 182 (637)
Q Consensus 104 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 182 (637)
.++..+|+.+|..+.+.|++++|..+|+.|...+ +.||..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4567789999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 006636 183 LIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNG 262 (637)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 262 (637)
|+.+|++.|++++|.++|++|.+ ||..+||.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 99999999999999999999963 7999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHH
Q 006636 263 EADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLA 342 (637)
Q Consensus 263 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 342 (637)
..+.+.+++..+.+.|+.+|..++++|+++|+++|++++|.++|+.|. .+|..+|++++.+|++.|+.++|.++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999996 6799999999999999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 006636 343 LMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPN 422 (637)
Q Consensus 343 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 422 (637)
.|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..++++|+++|+++|++++|.++|++|. .||
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d 390 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKN 390 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 589
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHH
Q 006636 423 VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA-FGVHPQKSTFLLLAE 501 (637)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~ 501 (637)
..+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+ +|+.|+..+|.++++
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999974 799999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhccccccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhhhcccc
Q 006636 502 ARRATGLTKEAKRILSKIKNKERTNEMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLR 581 (637)
Q Consensus 502 ~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~a~~~~e~~~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~ 581 (637)
+|+++|++++|.+++++|+. .|+...| ..|.+.+...|+.+.|.++-+.+.+.
T Consensus 471 ~l~r~G~~~eA~~~~~~~~~------------------------~p~~~~~---~~Ll~a~~~~g~~~~a~~~~~~l~~~ 523 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRAPF------------------------KPTVNMW---AALLTACRIHKNLELGRLAAEKLYGM 523 (697)
T ss_pred HHHhcCCHHHHHHHHHHCCC------------------------CCCHHHH---HHHHHHHHHcCCcHHHHHHHHHHhCC
Confidence 99999999999999988742 2443333 55667888999999999888777654
Q ss_pred cc
Q 006636 582 DA 583 (637)
Q Consensus 582 ~~ 583 (637)
+.
T Consensus 524 ~p 525 (697)
T PLN03081 524 GP 525 (697)
T ss_pred CC
Confidence 43
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.9e-30 Score=296.10 Aligned_cols=497 Identities=12% Similarity=0.045 Sum_probs=368.6
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006636 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 150 (637)
+...+..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +........++.
T Consensus 362 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 439 (899)
T TIGR02917 362 DPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLIL 439 (899)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHH
Confidence 34445555555666666666666666655432 2244455555555556666666666666655543 223344445556
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 006636 151 AFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNIT 230 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 230 (637)
.+.+.|++++|..+++.+.... +.+..+|..+...|...|++++|.+.|+++.+.. +.+...+..++..+...|+++
T Consensus 440 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~ 516 (899)
T TIGR02917 440 SYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPD 516 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHH
Confidence 6666666666666666666543 3356677777777778888888888887777653 455667777777777888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006636 231 EAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMK 310 (637)
Q Consensus 231 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 310 (637)
+|.+.++++...+ +.+..++..+...+.+.|+.++|..+++++...+. .+...+..++..|.+.|++++|..+++.+.
T Consensus 517 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 594 (899)
T TIGR02917 517 DAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAA 594 (899)
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8888888877654 34667777788888888888888888888766543 455667778888888888888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 006636 311 EYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHA 390 (637)
Q Consensus 311 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 390 (637)
+.. +.+...|..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|..+++++.+.. +.+..+
T Consensus 595 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 671 (899)
T TIGR02917 595 DAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEA 671 (899)
T ss_pred HcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 654 5567788888888888888888888888887764 3466777888888888899999999888887764 446788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006636 391 YSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE 470 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 470 (637)
+..++..+...|++++|..+++.+.+.. +++...+..++..+...|++++|...|+++...+ |+..++..++.++.+
T Consensus 672 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~ 748 (899)
T TIGR02917 672 QIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLA 748 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHH
Confidence 8888888888999999999998888775 6677888888888999999999999999988854 555777888889999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccc-----------cccccccchHHHH
Q 006636 471 ARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERTN-----------EMEAEEDIPVESL 539 (637)
Q Consensus 471 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~-----------~~~~~~~~a~~~~ 539 (637)
.|++++|.+.++++.+.. ..+...+..++.++...|++++|...++++....|.+ ...++ +.|...+
T Consensus 749 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~ 826 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYA 826 (899)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHH
Confidence 999999999998887632 2356678888899999999999999999998775542 12344 5588889
Q ss_pred HHHHhhhccCCCCCCcccccccccccCCCchhhhhhhhccccccC
Q 006636 540 ERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDAD 584 (637)
Q Consensus 540 e~~~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~~~~ 584 (637)
++++++.|++.. .+..++.+|...|++++|....+++.+.+..
T Consensus 827 ~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 827 EKALKLAPNIPA--ILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHhhCCCCcH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999988888765 3467899999999999999999888877764
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.7e-30 Score=293.76 Aligned_cols=494 Identities=13% Similarity=0.094 Sum_probs=428.4
Q ss_pred CcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006636 69 CRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAV 148 (637)
Q Consensus 69 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (637)
+.+...+..+...+...|++++|+..|+.+..... ........++..+.+.|++++|..+++.+.... +.+..++..+
T Consensus 394 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 471 (899)
T TIGR02917 394 PENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLL 471 (899)
T ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHH
Confidence 34567788889999999999999999999987542 244566677888999999999999999998764 6778899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 006636 149 INAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN 228 (637)
Q Consensus 149 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 228 (637)
...|...|++++|...|+++.+..+. +...+..+...+...|++++|.+.|+++.... +.+..++..+...+.+.|+
T Consensus 472 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 548 (899)
T TIGR02917 472 GAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGN 548 (899)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCC
Confidence 99999999999999999999887543 67788889999999999999999999998864 5678899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006636 229 ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFART 308 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 308 (637)
.++|..+++++...+ +.+...+..++..+...|++++|..+++.+.+.. +.+...|..++.+|.+.|++++|+..|++
T Consensus 549 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 626 (899)
T TIGR02917 549 EEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKK 626 (899)
T ss_pred HHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998764 4567788889999999999999999999998754 35778899999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 006636 309 MKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA 388 (637)
Q Consensus 309 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 388 (637)
+.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..++..+...|++++|..+++.+.+.. +.+.
T Consensus 627 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 703 (899)
T TIGR02917 627 LLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAA 703 (899)
T ss_pred HHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCh
Confidence 98764 5577788999999999999999999999998865 3468889999999999999999999999998875 5678
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006636 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGY 468 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 468 (637)
..+..++..+.+.|++++|...|+++... .|+..++..++.++...|++++|.+.++++.+.. +.+...+..+...|
T Consensus 704 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~ 780 (899)
T TIGR02917 704 LGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELY 780 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 88899999999999999999999999986 4555788889999999999999999999999864 34777899999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccc-----------cccccccchHH
Q 006636 469 SEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERTN-----------EMEAEEDIPVE 537 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~-----------~~~~~~~~a~~ 537 (637)
...|+.++|...|+++.+.. .++...+..++.++...|+ ++|+.+++++....+.+ ...++.+.|..
T Consensus 781 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 858 (899)
T TIGR02917 781 LAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALP 858 (899)
T ss_pred HHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999998743 2356688999999999999 88999999997765542 13577788999
Q ss_pred HHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhhhcc
Q 006636 538 SLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRML 579 (637)
Q Consensus 538 ~~e~~~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~ 579 (637)
.++++++..|.+.. .+..++.+|...|++++|..+-+.|.
T Consensus 859 ~~~~a~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 859 LLRKAVNIAPEAAA--IRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHhhCCCChH--HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 99999998887654 46789999999999999998887764
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=1.7e-22 Score=231.49 Aligned_cols=371 Identities=11% Similarity=0.034 Sum_probs=229.8
Q ss_pred CcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH----------------HHHHHHHHhcCChhHHHHHHHH
Q 006636 69 CRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTY----------------TTLLAALTIQKRFNSIHSIMSQ 132 (637)
Q Consensus 69 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------------~~ll~~~~~~~~~~~a~~~~~~ 132 (637)
+.++..+..++..+.+.|+.++|.+.++++.+.. +.+.... ..+...+...|++++|...|++
T Consensus 59 p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~ 137 (1157)
T PRK11447 59 PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDK 137 (1157)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4456667778888888899999999998888753 2233322 2234467778889999998888
Q ss_pred HHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--
Q 006636 133 VEENGMDPDSIFF-NAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNV-- 209 (637)
Q Consensus 133 ~~~~~~~~~~~~~-~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-- 209 (637)
+.+.+ +|+...- ..+.......|+.++|++.++++.+..+. +...+..+...+...|+.++|++.++++......
T Consensus 138 ~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~ 215 (1157)
T PRK11447 138 LFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRD 215 (1157)
T ss_pred HccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchH
Confidence 88654 4443221 11122223458888899999888887543 6677888888888888888888888887543100
Q ss_pred -------------CCC---HHHH----------------------------------HHHHHHHHhcCCHHHHHHHHHHH
Q 006636 210 -------------KPN---LRTY----------------------------------NVLVRAWCNEKNITEAWNVMHKM 239 (637)
Q Consensus 210 -------------~~~---~~~~----------------------------------~~li~~~~~~g~~~~A~~~~~~~ 239 (637)
+++ ...+ ......+...|++++|+..|++.
T Consensus 216 ~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~a 295 (1157)
T PRK11447 216 AAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQA 295 (1157)
T ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 000 0000 01134456678888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-hhhH------------HHHHHHHHhcCCHHHHHHHH
Q 006636 240 AASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPN-GRTC------------GIIISGYCKEGKIKEALRFA 306 (637)
Q Consensus 240 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~------------~~li~~~~~~g~~~~A~~~~ 306 (637)
++.. +.+...+..|..++.+.|++++|+..|++..+...... ...| ......+.+.|++++|+..|
T Consensus 296 L~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~ 374 (1157)
T PRK11447 296 VRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLY 374 (1157)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7753 33677788888888888888888888888876543211 1111 12244567788888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHH------------------------
Q 006636 307 RTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNA------------------------ 362 (637)
Q Consensus 307 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~------------------------ 362 (637)
+++.+.. +.+...+..+...+...|++++|.+.|+++.+..+ .+...+..+...
T Consensus 375 ~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~ 452 (1157)
T PRK11447 375 QQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSI 452 (1157)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHH
Confidence 8887764 44566777778888888888888888888776542 233333333333
Q ss_pred ------------------HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 006636 363 ------------------WSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVV 424 (637)
Q Consensus 363 ------------------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 424 (637)
+...|++++|+..+++.++.. +.+...+..+...|.+.|++++|...++++.+.. +.+..
T Consensus 453 ~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~ 530 (1157)
T PRK11447 453 DDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPE 530 (1157)
T ss_pred HHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHH
Confidence 334555555555555555542 2234455555555566666666666666555432 22333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 006636 425 IFTTIISGWCSDGSMDRAIEVFD 447 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~ 447 (637)
.+..+...+...|+.++|+..++
T Consensus 531 ~~~a~al~l~~~~~~~~Al~~l~ 553 (1157)
T PRK11447 531 QVYAYGLYLSGSDRDRAALAHLN 553 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHH
Confidence 33333333333444444444433
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=3.7e-22 Score=228.61 Aligned_cols=488 Identities=12% Similarity=0.057 Sum_probs=350.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006636 76 TKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLV-TYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE 154 (637)
Q Consensus 76 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 154 (637)
..+...+.+.|++++|++.|+.+.+.+ +|+.. ............|+.++|+..++++.+.. +.+...+..+...+..
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~ 193 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFS 193 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHc
Confidence 444567788899999999999988643 33432 11111222234588889999999988875 5677788888888888
Q ss_pred cCCHHHHHHHHHHHHHCCC------------------C--------------CCHHHH---------------------H
Q 006636 155 SGNMEEAMDTFWKMKESGL------------------T--------------PTTSTY---------------------N 181 (637)
Q Consensus 155 ~g~~~~A~~~~~~m~~~~~------------------~--------------~~~~~~---------------------~ 181 (637)
.|+.++|+..++++.+... . |+.... .
T Consensus 194 ~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~ 273 (1157)
T PRK11447 194 SGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRAR 273 (1157)
T ss_pred cCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHH
Confidence 8999999888888754311 0 000000 0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHH---------
Q 006636 182 TLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKP-DVVTY--------- 251 (637)
Q Consensus 182 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~--------- 251 (637)
.....+...|++++|+..|++..+.. |.+...+..+...+.+.|++++|+..|++..+..... ....|
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 11344567789999999999988764 5578888899999999999999999999988754221 11112
Q ss_pred ---HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-----
Q 006636 252 ---NTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNL----- 323 (637)
Q Consensus 252 ---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----- 323 (637)
..+...+.+.|++++|+..|+++.+... .+...+..+...+...|++++|++.|+++.+.. +.+...+..
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 1224466788999999999999887643 356677778889999999999999999887653 223333322
Q ss_pred -------------------------------------HHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 006636 324 -------------------------------------LIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTA 366 (637)
Q Consensus 324 -------------------------------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 366 (637)
+...+...|++++|.+.+++..+..+ .+...+..+...|.+.
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQA 508 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 22334567899999999999988763 3667788899999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHhcC
Q 006636 367 GFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVV---------IFTTIISGWCSDG 437 (637)
Q Consensus 367 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~li~~~~~~g 437 (637)
|++++|...++++.+.. +.+...+..+...+.+.++.++|+..++.+......++.. .+..+...+...|
T Consensus 509 G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 99999999999998754 3456666666667788999999999998865432222221 1234566788899
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 006636 438 SMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 438 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~ 516 (637)
+.++|+.+++. .+++...+..+...+...|+.++|+..|++..+ ..|+ ...+..++.++...|++++|++.+
T Consensus 588 ~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 588 KEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred CHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999998872 234566777888899999999999999999877 3454 567888899999999999999999
Q ss_pred HHHhhhhccc-----------cccccccchHHHHHHHHhhhccCCC----CCCcccccccccccCCCchhhhhhhhc
Q 006636 517 SKIKNKERTN-----------EMEAEEDIPVESLERLYHKEATTAS----YPNLLQIPNVVSSDQKGSAAALKKGRM 578 (637)
Q Consensus 517 ~~~~~~~~~~-----------~~~~~~~~a~~~~e~~~~~~~~~~~----y~~~~~L~~~y~~~g~~~~a~~~r~~~ 578 (637)
++++...+.. ...++.+.|...++++++..|++.. ...+..++.+|...|++++|....+..
T Consensus 661 ~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 661 AKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9887664432 1356677888888888876554322 012334688999999999998876544
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=2e-22 Score=195.44 Aligned_cols=432 Identities=15% Similarity=0.114 Sum_probs=295.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006636 75 MTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE 154 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 154 (637)
...|.....+.|++.+|.+.-...-..+ +.+......+-..+.+..+++....--....+.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4557788889999999998766554432 1222222222334444445544433333333322 4456677777788878
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHH-HHHHHHHHHhcCCHHHHH
Q 006636 155 SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRT-YNVLVRAWCNEKNITEAW 233 (637)
Q Consensus 155 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~ 233 (637)
.|++++|+.+++.+.+..+. ....|..+..++...|+.+.|.+.|.+..+.. |+... .+.+....-..|++.+|.
T Consensus 129 rg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln---P~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN---PDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred hchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC---cchhhhhcchhHHHHhhcccchhH
Confidence 88888888888888776543 56677778888888888888888877777643 55433 333444555577788887
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006636 234 NVMHKMAASGMKPD-VVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPN-GRTCGIIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 234 ~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
..+.+.++. .|. .+.|+.|...+-..|+...|++.|++.++. +|+ ...|..|...|...+.+++|+..|.+...
T Consensus 205 ~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~ 280 (966)
T KOG4626|consen 205 ACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALN 280 (966)
T ss_pred HHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh
Confidence 777777664 233 456777777777788888888888777664 333 45677777778778888888877777765
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006636 312 YGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAY 391 (637)
Q Consensus 312 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 391 (637)
.. +...+.+..+...|-..|+.+.|+..+++.++..+ .-...|+.|..++-..|++.+|.+.+.+.+... +....+.
T Consensus 281 lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam 357 (966)
T KOG4626|consen 281 LR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAM 357 (966)
T ss_pred cC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHH
Confidence 42 23445666677777777888888888887777542 235677778888888888888888888777653 3346677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHh
Q 006636 392 SILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK-TFETLMWGYSE 470 (637)
Q Consensus 392 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~ 470 (637)
+.|...|...|.+++|..+|....+-. +.-....+.|...|-++|++++|+..|++.+. +.|+.. .|+.+...|-.
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHH
Confidence 778888888888888888887777642 22345677777788888888888888887776 566654 67777778888
Q ss_pred cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc
Q 006636 471 ARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 471 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
.|+.+.|++.+.+... +.|. .+..+.+..++..+|++.+|+.-++.+....|
T Consensus 435 ~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred hhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 8888888887777766 5566 34677777788888888888777777765544
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=6.2e-22 Score=192.06 Aligned_cols=444 Identities=10% Similarity=0.066 Sum_probs=359.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006636 110 YTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI 189 (637)
Q Consensus 110 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 189 (637)
...|..-..+.|++.+|.+.-...-..+ +.+....-.+-..+.+..+.+.....-....+... .-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~-q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNP-QGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccc-hHHHHHHHHHHHHHH
Confidence 4455666678899999987655444432 33333444444566666677666554444444332 357789999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHH
Q 006636 190 AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYN-TIATAYAQNGEADQAE 268 (637)
Q Consensus 190 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~ 268 (637)
.|++++|+.+++.+.+.. +..+..|..+..++...|+.+.|...|.+.++. .|+..... .+....-..|++++|.
T Consensus 129 rg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred hchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence 999999999999999864 456889999999999999999999999999875 56554433 4555566789999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCC
Q 006636 269 EVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR 348 (637)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 348 (637)
..|.+.++... -=..+|+.|...+-..|+...|++.|++..+.. +--...|-.+...|...+.++.|...+.......
T Consensus 205 ~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 205 ACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 99998887632 235789999999999999999999999998763 2235688999999999999999999999887765
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006636 349 VNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTT 428 (637)
Q Consensus 349 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 428 (637)
+.....+..+...|-..|.++.|+..+++.++.. +.-...|+.|..++-..|+..+|...+++..... +....+.+.
T Consensus 283 -pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~N 359 (966)
T KOG4626|consen 283 -PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNN 359 (966)
T ss_pred -CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHH
Confidence 2356778888888999999999999999999864 2347899999999999999999999999999873 455678999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHc
Q 006636 429 IISGWCSDGSMDRAIEVFDKMCEHGVSPNLK-TFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK-STFLLLAEARRAT 506 (637)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~ 506 (637)
|...|...|.+++|..+|+...+ +.|... .++.|...|-+.|+.++|+..+++... +.|+. ..|..+...|...
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHh
Confidence 99999999999999999999998 456644 799999999999999999999999887 89985 4899999999999
Q ss_pred CCHHHHHHHHHHHhhhhccc-----------cccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCCch
Q 006636 507 GLTKEAKRILSKIKNKERTN-----------EMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSA 570 (637)
Q Consensus 507 g~~~eA~~~~~~~~~~~~~~-----------~~~~~~~~a~~~~e~~~~~~~~~~~y~~~~~L~~~y~~~g~~~~ 570 (637)
|+.++|...+.++...+|.- ..-|+...|...++.++.+.||... ++.+|....--...|.+
T Consensus 436 g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd--A~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD--AYCNLLHCLQIVCDWTD 508 (966)
T ss_pred hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch--hhhHHHHHHHHHhcccc
Confidence 99999999999998665531 2357889999999999999998765 45777766666677776
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=8.6e-19 Score=188.78 Aligned_cols=431 Identities=12% Similarity=0.014 Sum_probs=298.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006636 74 SMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFS 153 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 153 (637)
.+......+.+.|++++|+..|++.+. ..|+...|..+..+|...|++++|+..+.+.++.. +.+...+..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 455678889999999999999999987 46788889999999999999999999999999875 556788999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006636 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAW 233 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 233 (637)
..|++++|+..|......+...+.. ...++..+.. ..+........... +++...+..+...+ .........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~--~~~~~~~~~~~~~~-~~~~~~~~~ 277 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK--PENLPSVTFVGNYL-QSFRPKPRP 277 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC--CCCCCCHHHHHHHH-HHccCCcch
Confidence 9999999999887776543222222 2222221111 12222222222221 22222333222222 111111111
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHH---HHHcCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 006636 234 NVMHKMAASGMKPD-VVTYNTIATA---YAQNGEADQAEEVIVEMEHNG--VQPNGRTCGIIISGYCKEGKIKEALRFAR 307 (637)
Q Consensus 234 ~~~~~~~~~g~~~~-~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 307 (637)
.-+....+. .+. ...+..+... ....+.+++|.+.|++....+ .+.....+..+...+...|++++|+..|+
T Consensus 278 ~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 278 AGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred hhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 111111111 111 0111111111 123467889999998888754 12345667788888888999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 006636 308 TMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD 387 (637)
Q Consensus 308 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 387 (637)
+.+... +.....|..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|+..|++.++.. +.+
T Consensus 356 kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~ 432 (615)
T TIGR00990 356 KSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDF 432 (615)
T ss_pred HHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccC
Confidence 988763 3346678888888888999999999999887765 3467788888888999999999999999988764 346
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----H-HH
Q 006636 388 AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNL-----K-TF 461 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~-~~ 461 (637)
...+..+...+.+.|++++|+..|++..+.. +.+...|+.+...+...|++++|+..|++..+.....+. . .+
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLI 511 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHH
Confidence 7778888888899999999999999888763 556788888899999999999999999998875322111 1 11
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhhh
Q 006636 462 ETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS-TFLLLAEARRATGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 462 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 523 (637)
...+..+...|++++|..++++..+ +.|+.. .+..++.++.+.|++++|.++++++....
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~--l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALI--IDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 2222233446899999999988776 345544 67788899999999999999999886553
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=4e-21 Score=196.51 Aligned_cols=311 Identities=14% Similarity=0.130 Sum_probs=185.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhcCC
Q 006636 151 AFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKP--NLRTYNVLVRAWCNEKN 228 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~~li~~~~~~g~ 228 (637)
.+...|++++|...|.++.+.++. +..++..+...+...|++++|..+++.+.......+ ...++..++..|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 344556666666666666665422 444566666666666666666666666655321111 12345566666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHH
Q 006636 229 ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNG----RTCGIIISGYCKEGKIKEALR 304 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~ 304 (637)
+++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..++..+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 666666666665542 234556666666666666666666666666554322211 123445556666677777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 006636 305 FARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGI 384 (637)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 384 (637)
.|+++.+.. +.+...+..+...+.+.|++++|.+.++.+.+.++.....++..++.+|...|++++|...++.+.+.
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 777666543 23344555566666666666666666666655432222345566667777777777777777776664
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006636 385 KPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS---DGSMDRAIEVFDKMCEHGVSPNLKTF 461 (637)
Q Consensus 385 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~ 461 (637)
.|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.++++.+|++|.+.++.|++.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-- 354 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR-- 354 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC--
Confidence 344455566777777777777777777776664 4666666666665553 446777777777777655555554
Q ss_pred HHHHHHHHhcCCh
Q 006636 462 ETLMWGYSEARQP 474 (637)
Q Consensus 462 ~~l~~~~~~~g~~ 474 (637)
.+|.+.|..
T Consensus 355 ----~~c~~cg~~ 363 (389)
T PRK11788 355 ----YRCRNCGFT 363 (389)
T ss_pred ----EECCCCCCC
Confidence 335555543
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=6.2e-19 Score=193.04 Aligned_cols=222 Identities=12% Similarity=-0.005 Sum_probs=163.6
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006636 352 DVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIIS 431 (637)
Q Consensus 352 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 431 (637)
+...|..+..++.. ++.++|...+...... .|+......+...+...|++++|...|+++... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 45566666666655 7777888877777665 355444444455556889999999999887654 455566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006636 432 GWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKE 511 (637)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~e 511 (637)
++.+.|+.++|...+++..+... ++...+..+...+...|++++|...+++..+ +.|+...+..+..++.+.|+.++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHH
Confidence 88889999999999998887542 2333344444455566999999999988876 56777788888889999999999
Q ss_pred HHHHHHHHhhhhccc-----------cccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhhhccc
Q 006636 512 AKRILSKIKNKERTN-----------EMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLL 580 (637)
Q Consensus 512 A~~~~~~~~~~~~~~-----------~~~~~~~~a~~~~e~~~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~ 580 (637)
|+..++++....|.+ ...++.+.|...+++++++.|++.. ++.+|+.+|...|++++|....++..+
T Consensus 628 A~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~--a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 628 AVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPA--LIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999988877653 1246678888888899888888765 467889999999999988877766655
Q ss_pred ccc
Q 006636 581 RDA 583 (637)
Q Consensus 581 ~~~ 583 (637)
...
T Consensus 706 l~P 708 (987)
T PRK09782 706 DID 708 (987)
T ss_pred cCC
Confidence 444
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=8e-19 Score=189.01 Aligned_cols=424 Identities=13% Similarity=0.016 Sum_probs=297.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006636 109 TYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYG 188 (637)
Q Consensus 109 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 188 (637)
.+......+...|+++.|+..|++.++. .|+...|..+..+|.+.|++++|+..++...+..+. +...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 3455667788889999999999998875 567888888889999999999999999998887543 5678888899999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006636 189 IAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAE 268 (637)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 268 (637)
..|++++|+..|......+. .+......++..+.. ..+........+.. +++...+..+.. |..........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~--~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~ 277 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDG--FRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRP 277 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCC--CccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcch
Confidence 99999999988877665431 122222222222211 12222233333221 222223332322 22222222222
Q ss_pred HHHHHHHhCCCCCC-hhhHHHHHHHH---HhcCCHHHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHHcCCHhhHHHHHH
Q 006636 269 EVIVEMEHNGVQPN-GRTCGIIISGY---CKEGKIKEALRFARTMKEYG-V-HPNLVIFNLLIKGFVEIMDRDGVDEVLA 342 (637)
Q Consensus 269 ~~~~~~~~~~~~~~-~~~~~~li~~~---~~~g~~~~A~~~~~~~~~~~-~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 342 (637)
.-+....+. .+. ...+..+...+ ...+++++|++.|+...+.+ . +.....+..+...+...|++++|...++
T Consensus 278 ~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 278 AGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred hhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 222211111 111 11111111111 23478999999999998764 2 3345678888888999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 006636 343 LMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPN 422 (637)
Q Consensus 343 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 422 (637)
...+..+ .....|..+...+...|++++|...|+.+++.. +.+..++..+...|...|++++|...|++..+.. +.+
T Consensus 356 kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~ 432 (615)
T TIGR00990 356 KSIELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDF 432 (615)
T ss_pred HHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccC
Confidence 9988652 356788889999999999999999999998864 4568899999999999999999999999999874 567
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH------HH
Q 006636 423 VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS------TF 496 (637)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~~ 496 (637)
...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|+..|++..+.....+.. .+
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLI 511 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHH
Confidence 7888899999999999999999999998753 2357789999999999999999999999987632211111 12
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhhccc-----------cccccccchHHHHHHHHhhhccC
Q 006636 497 LLLAEARRATGLTKEAKRILSKIKNKERTN-----------EMEAEEDIPVESLERLYHKEATT 549 (637)
Q Consensus 497 ~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~-----------~~~~~~~~a~~~~e~~~~~~~~~ 549 (637)
......+...|++++|..+++++....|.. ...++.+.|...+++++++.+..
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 222334455799999999999987665542 23567788888889988876543
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=3.1e-20 Score=189.99 Aligned_cols=302 Identities=12% Similarity=0.120 Sum_probs=176.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHH
Q 006636 184 IKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPD---VVTYNTIATAYAQ 260 (637)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~ 260 (637)
...+...|++++|+..|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|.+
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 334567788888888888888764 44566778888888888888888888888776432211 2456677777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHhh
Q 006636 261 NGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNL----VIFNLLIKGFVEIMDRDG 336 (637)
Q Consensus 261 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~ 336 (637)
.|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 888888888887776643 245667777777777777887787777777664322211 123344445555566666
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006636 337 VDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
|...++++.+.. +.+...+..+...+.+.|++++|.++++++...+......+++.++.+|.+.|++++|...++++.+
T Consensus 199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666665555433 1233444455555555555555555555555432111133445555555555555555555555554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCH
Q 006636 417 SGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE---ARQPWRAEEILQIMKAFGVHPQK 493 (637)
Q Consensus 417 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~p~~ 493 (637)
. .|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.++++.++++|.+.++.|++
T Consensus 278 ~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 278 E--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred h--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 3 234444455555555555555555555555543 3555555554444332 33555555555555544444443
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=2.8e-18 Score=184.07 Aligned_cols=327 Identities=9% Similarity=0.027 Sum_probs=145.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 006636 114 LAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKP 193 (637)
Q Consensus 114 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 193 (637)
+..+.+.|+++.|..+++..+... +.+...+..++..+...|++++|...|+++.+..+. +...+..+...+.+.|++
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCH
Confidence 334444444444444444444432 222333333334444444555555555544444322 334444444444445555
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006636 194 EESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVE 273 (637)
Q Consensus 194 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 273 (637)
++|+..+++..... |.+...+..++..+...|++++|...++.+...... +...+..+ ..+...|++++|...++.
T Consensus 127 ~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 127 ATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 55555554444432 233444444444455555555555544444333211 11122111 124444555555555544
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhh----HHHHHHHHhhCCC
Q 006636 274 MEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDG----VDEVLALMKEFRV 349 (637)
Q Consensus 274 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~ 349 (637)
+......++......+...+.+.|++++|+..++++.... +.+...+..+...+...|++++ |...++...+..+
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P 281 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS 281 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC
Confidence 4433222222222333344445555555555555544432 2334444444455555555443 4445555444332
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHH
Q 006636 350 NPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNV-VIFTT 428 (637)
Q Consensus 350 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~ 428 (637)
.+...+..+...+...|++++|...+++..... +.+..++..+...|.+.|++++|...|+++.+. .|+. ..+..
T Consensus 282 -~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~ 357 (656)
T PRK15174 282 -DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRY 357 (656)
T ss_pred -CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHH
Confidence 234445555555555555555555555555432 223444444555555555555555555555443 2222 22222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 006636 429 IISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
+..++...|+.++|+..|+++.+
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 34445555555555555555544
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=3.1e-18 Score=183.76 Aligned_cols=353 Identities=9% Similarity=0.057 Sum_probs=288.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006636 76 TKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSES 155 (637)
Q Consensus 76 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 155 (637)
-.++..+.+.|++++|+.+++...... +-+...+..++.+....|+++.|...++++.+.. |.+...+..+...+...
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 345778889999999999999998853 3456667777788888999999999999999875 66788899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006636 156 GNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNV 235 (637)
Q Consensus 156 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 235 (637)
|++++|...|++..+..+. +...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...
T Consensus 124 g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred CCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 9999999999999987433 67788999999999999999999999887654 3444445444 347889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH----HHHHHHHHHH
Q 006636 236 MHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKE----ALRFARTMKE 311 (637)
Q Consensus 236 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~ 311 (637)
++.+.+....++...+..+...+...|++++|...++++..... .+...+..+...|...|++++ |+..|++...
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 99988764334555556667888999999999999999988753 467788889999999999986 8999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHH
Q 006636 312 YGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD-AHA 390 (637)
Q Consensus 312 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~ 390 (637)
.. +.+...+..+...+...|++++|...++...+..+ .+...+..+..++.+.|++++|...++.+.... |+ ...
T Consensus 279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~ 354 (656)
T PRK15174 279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKW 354 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHH
Confidence 64 55677899999999999999999999999988753 356778888999999999999999999998764 44 344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006636 391 YSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (637)
+..+..++...|+.++|...|++..+. .|+.. ...+++|...+.+..+.
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~--~P~~~-----------~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQA--RASHL-----------PQSFEEGLLALDGQISA 403 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--Chhhc-----------hhhHHHHHHHHHHHHHh
Confidence 555677889999999999999999876 34432 23455666666666654
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=8e-18 Score=184.54 Aligned_cols=403 Identities=10% Similarity=0.068 Sum_probs=228.4
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006636 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 150 (637)
+.....-.+......|+.++|++++.+.... .+.+...+..+..++...|++++|..++++.++.. +.+...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3444444566667788888888888887752 13455567777888888888888888888877764 555667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 006636 151 AFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNIT 230 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 230 (637)
.+...|++++|+..+++..+..+. +.. +..+..++...|+.++|+..++++.+.. |.+...+..+...+...+..+
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChH
Confidence 888888888888888888776432 455 7777778888888888888888887764 445666667777777788888
Q ss_pred HHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHhC-CCCCChh-hH----HHHH
Q 006636 231 EAWNVMHKMAASGMKPDV------VTYNTIATAYA-----QNGEA---DQAEEVIVEMEHN-GVQPNGR-TC----GIII 290 (637)
Q Consensus 231 ~A~~~~~~~~~~g~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~~~~~-~~~~~~~-~~----~~li 290 (637)
+|++.++.+.. .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+ ...+
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 88887776553 2221 01111222221 11122 4555555555532 1112111 11 0112
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCC---CHHHHHHHHHHHHHc
Q 006636 291 SGYCKEGKIKEALRFARTMKEYGVH-PNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNP---DVITYSTIMNAWSTA 366 (637)
Q Consensus 291 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 366 (637)
..+...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|...|+.+.+..... .......+..++...
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 2334556666666666666554311 111 11113445556666666666666654432111 123334444455566
Q ss_pred CChhHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006636 367 GFMDKCKEIFDDMGKAGI-----------KPD---AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISG 432 (637)
Q Consensus 367 g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 432 (637)
|++++|..+++.+..... .|+ ...+..++..+...|++++|+++++++.... |.+...+..+...
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l 402 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASV 402 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 666666666666554421 011 1233444455555566666666665555442 4445555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006636 433 WCSDGSMDRAIEVFDKMCEHGVSPN-LKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
+...|++++|++.++++.+.. |+ ...+..++..+...|++++|..+++.+.+
T Consensus 403 ~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555566666666665555532 33 33444444455555556666655555554
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=6e-18 Score=185.50 Aligned_cols=412 Identities=10% Similarity=-0.010 Sum_probs=314.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006636 104 KPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTL 183 (637)
Q Consensus 104 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 183 (637)
+.++....-.+......|+.++|+.++.+..... +.+...+..+...+...|++++|..+|++..+..+. +...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 3455555666777888999999999999998643 566778999999999999999999999999887433 57778899
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006636 184 IKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGE 263 (637)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 263 (637)
+..+...|++++|+..+++..... |.+.. +..+...+...|+.++|+..++++.+.. +.+...+..+..++...+.
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 999999999999999999998874 55677 9999999999999999999999999874 3356666778888889999
Q ss_pred HHHHHHHHHHHHhCC---CCCChhhHHHHHHHH-----HhcCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHH
Q 006636 264 ADQAEEVIVEMEHNG---VQPNGRTCGIIISGY-----CKEGKI---KEALRFARTMKEY-GVHPNLV-IF----NLLIK 326 (637)
Q Consensus 264 ~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~-----~~~g~~---~~A~~~~~~~~~~-~~~~~~~-~~----~~ll~ 326 (637)
.+.|+..++...... ..........++..+ ...+++ ++|+..++.+.+. ...|+.. .+ ...+.
T Consensus 166 ~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 166 SAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 999999988655410 000111222222222 233344 7889999988754 1122221 11 11134
Q ss_pred HHHHcCCHhhHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcC
Q 006636 327 GFVEIMDRDGVDEVLALMKEFRVN-PDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKP---DAHAYSILAKGYVREQ 402 (637)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g 402 (637)
++...|++++|...|+.+.+.+.+ |+. ....+..+|...|++++|+..|+.+....... .......|..++.+.|
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 456779999999999999887532 322 22335778999999999999999988653211 1355677777889999
Q ss_pred CHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006636 403 EPEKAEELLMTMIESGF-----------HPN---VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGY 468 (637)
Q Consensus 403 ~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 468 (637)
++++|..+++++..... .|+ ...+..+...+...|+.++|+++++++....+ -+...+..++..+
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P-~n~~l~~~lA~l~ 403 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP-GNQGLRIDYASVL 403 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 99999999999987521 123 23566778889999999999999999988643 3567889999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc
Q 006636 469 SEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
...|++++|++.+++... +.|+ ...+...+..+.+.|++++|+.+++++....|.
T Consensus 404 ~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 404 QARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999887 5577 446667777899999999999999999887664
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.88 E-value=6.6e-18 Score=185.09 Aligned_cols=469 Identities=8% Similarity=0.017 Sum_probs=270.6
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHH
Q 006636 82 LIERGKPQEAQAIFNNLIEGGHKPSLVTYTTL-LAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE-SGNME 159 (637)
Q Consensus 82 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~ 159 (637)
|.+.+...++++ .......|++.+.... ...|...|++++|+.++.++.+.+ +.+......|..+|.. .++ +
T Consensus 160 y~q~eqAl~AL~----lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~ 233 (987)
T PRK09782 160 LAQLPVARAQLN----DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-D 233 (987)
T ss_pred hhhHHHHHHHHH----HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-H
Confidence 555544444443 2222234444444444 788888888888888888888876 5556666677777777 366 7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHH-----------------------
Q 006636 160 EAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTY----------------------- 216 (637)
Q Consensus 160 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~----------------------- 216 (637)
.+..++... ++.+...+..++..|.+.|+.++|.+++.++.....-.|...+|
T Consensus 234 ~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~ 309 (987)
T PRK09782 234 RLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFA 309 (987)
T ss_pred HHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhH
Confidence 777775532 22477788888888888888888888888775432111222222
Q ss_pred -------HHHHHHHHhcCCHHHHHHHH-----------------------------HHHHHCCCCCCHHHHHHHHHHHHH
Q 006636 217 -------NVLVRAWCNEKNITEAWNVM-----------------------------HKMAASGMKPDVVTYNTIATAYAQ 260 (637)
Q Consensus 217 -------~~li~~~~~~g~~~~A~~~~-----------------------------~~~~~~g~~~~~~~~~~li~~~~~ 260 (637)
..++..+.+.++++.+.++. ..|.+.. +-+......+.-...+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~ 388 (987)
T PRK09782 310 DNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQ 388 (987)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 11233444455554444332 1111110 1122223333334456
Q ss_pred cCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCC---HHHHHHH----------------------HHHHHHC-
Q 006636 261 NGEADQAEEVIVEMEHNG--VQPNGRTCGIIISGYCKEGK---IKEALRF----------------------ARTMKEY- 312 (637)
Q Consensus 261 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~---~~~A~~~----------------------~~~~~~~- 312 (637)
.|+.++|.++|....... ...+......++..|.+.+. ..++..+ +......
T Consensus 389 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 468 (987)
T PRK09782 389 NGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLL 468 (987)
T ss_pred cccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhc
Confidence 677777777777765420 11223334456666666554 2222222 1111110
Q ss_pred CC-CC--CHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 006636 313 GV-HP--NLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAH 389 (637)
Q Consensus 313 ~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 389 (637)
+. ++ +...|..+..++.. ++.++|...+....... |+......+..++...|++++|...|+++... +|+..
T Consensus 469 ~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~ 543 (987)
T PRK09782 469 GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNE 543 (987)
T ss_pred ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcH
Confidence 11 23 45566666666555 66666777666655543 34333333444445777777777777776543 34444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006636 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYS 469 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 469 (637)
.+..+...+.+.|++++|...+++..+.. +++...+..+.......|++++|+..+++..+. .|+...+..+..++.
T Consensus 544 a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~ 620 (987)
T PRK09782 544 DLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYR 620 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 55566666777777777777777776653 333333333333444557777777777777763 356667777777777
Q ss_pred hcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccc-----------cccccccchHH
Q 006636 470 EARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNKERTN-----------EMEAEEDIPVE 537 (637)
Q Consensus 470 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~-----------~~~~~~~~a~~ 537 (637)
+.|+.++|+..+++... ..|+ ...+..+..++...|+.++|+..++++....|.+ ...++.+.|+.
T Consensus 621 ~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~ 698 (987)
T PRK09782 621 QRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH 698 (987)
T ss_pred HCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 77777777777777765 4454 3355666667777777777777777776665542 23456667777
Q ss_pred HHHHHHhhhccCCCCCCcccccccccccCCCchhhh
Q 006636 538 SLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAAL 573 (637)
Q Consensus 538 ~~e~~~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~ 573 (637)
.++++++++|+++. .....+++.....+++.+.+
T Consensus 699 ~l~~Al~l~P~~a~--i~~~~g~~~~~~~~~~~a~~ 732 (987)
T PRK09782 699 YARLVIDDIDNQAL--ITPLTPEQNQQRFNFRRLHE 732 (987)
T ss_pred HHHHHHhcCCCCch--hhhhhhHHHHHHHHHHHHHH
Confidence 77777777776654 34556666666666665555
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=1.1e-16 Score=172.05 Aligned_cols=434 Identities=10% Similarity=0.030 Sum_probs=325.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006636 79 MNSLIERGKPQEAQAIFNNLIEGGHKPSL--VTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESG 156 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 156 (637)
+-...+.|+++.|+..|++..+. .|+. ..+ .++..+...|+.++|+..+++..... +........+...|...|
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcC
Confidence 44556899999999999999975 4442 344 88888889999999999999988321 333444555567888999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006636 157 NMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVM 236 (637)
Q Consensus 157 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 236 (637)
++++|+++|+++.+..+. +...+..++..|...++.++|++.++++.... |+...+..++..+...++..+|++.+
T Consensus 117 dyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d---p~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 117 RWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERD---PTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred CHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC---cchHHHHHHHHHHHhcchHHHHHHHH
Confidence 999999999999998755 57788888999999999999999999998764 66666655555555567776799999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhH------HHHHHHH---H--hcCC---HHHH
Q 006636 237 HKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTC------GIIISGY---C--KEGK---IKEA 302 (637)
Q Consensus 237 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------~~li~~~---~--~~g~---~~~A 302 (637)
+++.+.. +.+...+..+..+..+.|-...|.++..+-... +.+....+ ..++..- . ...+ .+.|
T Consensus 193 ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~a 270 (822)
T PRK14574 193 SEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKA 270 (822)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 9999874 446777788899999999999998776653211 11111000 0111100 0 1122 3456
Q ss_pred HHHHHHHHHC-C-CCCCHH----HHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 006636 303 LRFARTMKEY-G-VHPNLV----IFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIF 376 (637)
Q Consensus 303 ~~~~~~~~~~-~-~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 376 (637)
+.-++.+... + .++... ...-.+-++...+++.++++.++.+...+.+....+-..+.++|...+++++|..++
T Consensus 271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 6666666542 1 122222 223345677889999999999999998887666778889999999999999999999
Q ss_pred HHHHHCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-------------CCCHH-HHHHHHHHHHhcC
Q 006636 377 DDMGKAG-----IKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGF-------------HPNVV-IFTTIISGWCSDG 437 (637)
Q Consensus 377 ~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------~~~~~-~~~~li~~~~~~g 437 (637)
+.+.... .+++......|..+|...+++++|..+++++.+... .||-. ....++..+...|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g 430 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN 430 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 9987643 123444467899999999999999999999987311 12222 2344567788999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHH
Q 006636 438 SMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK-STFLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 438 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~ 516 (637)
+..+|++.++++....+ -|......+...+...|.+.+|.+.++.... +.|+. ......+.++...|++++|..++
T Consensus 431 dl~~Ae~~le~l~~~aP-~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 431 DLPTAQKKLEDLSSTAP-ANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 99999999999987653 3888999999999999999999999977765 46664 46668888889999999999999
Q ss_pred HHHhhhhcc
Q 006636 517 SKIKNKERT 525 (637)
Q Consensus 517 ~~~~~~~~~ 525 (637)
+++....|.
T Consensus 508 ~~l~~~~Pe 516 (822)
T PRK14574 508 DDVISRSPE 516 (822)
T ss_pred HHHHhhCCC
Confidence 999877765
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.86 E-value=3.1e-17 Score=168.18 Aligned_cols=447 Identities=14% Similarity=0.093 Sum_probs=345.5
Q ss_pred cCcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HH
Q 006636 68 SCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHK--PSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPD--SI 143 (637)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~ 143 (637)
...+++..+.|.+.|.-.|++..+..+...+...... .-..+|..+.+++-..|++++|...|.+..+.. +| +.
T Consensus 266 n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l 343 (1018)
T KOG2002|consen 266 NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVL 343 (1018)
T ss_pred cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccc
Confidence 4457788888999999999999999999988764311 123468888999999999999999998888764 33 44
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 006636 144 FFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAG----KPEESVKLLDLMSREGNVKPNLRTYNVL 219 (637)
Q Consensus 144 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~~~~~~~~~~l 219 (637)
.+--|..+|.+.|+++.+...|+.+.+..+. +..+...|...|...+ ..+.|..++.+..+.. +.|...|-.+
T Consensus 344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~--~~d~~a~l~l 420 (1018)
T KOG2002|consen 344 PLVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT--PVDSEAWLEL 420 (1018)
T ss_pred cccchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc--cccHHHHHHH
Confidence 5566789999999999999999999886432 5667777777887765 5677888888877753 6788889888
Q ss_pred HHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCCCh------hhH
Q 006636 220 VRAWCNEKNITEAWNVMHKMA----ASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHN---GVQPNG------RTC 286 (637)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~----~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~------~~~ 286 (637)
...+-...-+.. +..|..+. ..+..+.+...|.+...+...|+++.|...|...... ...+|. .+-
T Consensus 421 aql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~ 499 (1018)
T KOG2002|consen 421 AQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLK 499 (1018)
T ss_pred HHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHH
Confidence 888766554444 66665543 4555678889999999999999999999999887654 112222 234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 006636 287 GIIISGYCKEGKIKEALRFARTMKEYGVHPNLV-IFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWST 365 (637)
Q Consensus 287 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 365 (637)
..+...+-..++++.|.+.|..+.+. .|+-+ .|--++......+...+|...++...... ..++..++.+...+..
T Consensus 500 YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~ 576 (1018)
T KOG2002|consen 500 YNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLK 576 (1018)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHh
Confidence 45666777788999999999999876 34433 44444433445577788888888887754 4566777778778888
Q ss_pred cCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006636 366 AGFMDKCKEIFDDMGKAG-IKPDAHAYSILAKGYVR------------EQEPEKAEELLMTMIESGFHPNVVIFTTIISG 432 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 432 (637)
...+..|.+-|..+.+.- ..+|+.+..+|.+.|.+ .+..++|+++|.++++.. |.|...-|-+.-.
T Consensus 577 k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiV 655 (1018)
T KOG2002|consen 577 KSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIV 655 (1018)
T ss_pred hhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhh
Confidence 888888888777665532 23677888788876643 345788999999999875 7788888999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006636 433 WCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK-AFGVHPQKSTFLLLAEARRATGLTKE 511 (637)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~e 511 (637)
++..|++.+|..+|.+..+... -+..+|..+..+|...|++..|++.|+... +..-.-+.....+|..++.+.|.+.+
T Consensus 656 LA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~e 734 (1018)
T KOG2002|consen 656 LAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQE 734 (1018)
T ss_pred hhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHH
Confidence 9999999999999999998753 256689999999999999999999998864 55556678889999999999999999
Q ss_pred HHHHHHHHhhhhcc
Q 006636 512 AKRILSKIKNKERT 525 (637)
Q Consensus 512 A~~~~~~~~~~~~~ 525 (637)
|.+.+..+....|+
T Consensus 735 ak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 735 AKEALLKARHLAPS 748 (1018)
T ss_pred HHHHHHHHHHhCCc
Confidence 99999998766665
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=2.7e-15 Score=161.39 Aligned_cols=425 Identities=12% Similarity=0.079 Sum_probs=308.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006636 115 AALTIQKRFNSIHSIMSQVEENGMDPDS--IFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGK 192 (637)
Q Consensus 115 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 192 (637)
-...+.|+++.|+..|+++++.. |+. .++ .++..+...|+.++|+.++++..... +........+...|...|+
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCC
Confidence 34568999999999999999864 443 344 88888999999999999999998321 1233444445678889999
Q ss_pred hHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006636 193 PEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIV 272 (637)
Q Consensus 193 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 272 (637)
+++|+++|+++.+.. |.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++
T Consensus 118 yd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 118 WDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred HHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 999999999999875 566788888899999999999999999999876 5566666555555555677767999999
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHH---------HcCCHhhH---H
Q 006636 273 EMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIF--NLLIKGFV---------EIMDRDGV---D 338 (637)
Q Consensus 273 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~ll~~~~---------~~~~~~~a---~ 338 (637)
++.+..+ .+...+..+.....+.|-...|.++..+-... +.+....+ ...+.-.+ ...++..+ .
T Consensus 194 kll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 194 EAVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 9998753 46777888899999999999998777654321 11111111 00000011 11223333 3
Q ss_pred HHHHHHhh-CCCCCCH-----HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006636 339 EVLALMKE-FRVNPDV-----ITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLM 412 (637)
Q Consensus 339 ~~~~~~~~-~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 412 (637)
.-++.+.. .+..|.. .+..-.+-++...|+..++++.|+.+...+.+....+-.++.++|...+++++|+.+++
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 33444433 1222321 12234455778899999999999999988866667788999999999999999999999
Q ss_pred HHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CC--CHH-HHHHHHHHHHhcCC
Q 006636 413 TMIESG-----FHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGV-----------SP--NLK-TFETLMWGYSEARQ 473 (637)
Q Consensus 413 ~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~p--~~~-~~~~l~~~~~~~g~ 473 (637)
.+.... .+++......|.-+|...+++++|..+++++.+.-+ .| |-. .+..++..+...|+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd 431 (822)
T PRK14574 352 SLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND 431 (822)
T ss_pred HHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC
Confidence 997642 123444467889999999999999999999987321 13 333 34455777889999
Q ss_pred hhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccc-----------cccccccchHHHHHH
Q 006636 474 PWRAEEILQIMKAFGVHP-QKSTFLLLAEARRATGLTKEAKRILSKIKNKERTN-----------EMEAEEDIPVESLER 541 (637)
Q Consensus 474 ~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~-----------~~~~~~~~a~~~~e~ 541 (637)
..+|++.++++.. ..| +......+.+++...|+..+|+..++.+....|.+ ...++.+.|.....+
T Consensus 432 l~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~ 509 (822)
T PRK14574 432 LPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDD 509 (822)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 9999999999976 344 56688899999999999999999997776665542 123455666666777
Q ss_pred HHhhhccCCC
Q 006636 542 LYHKEATTAS 551 (637)
Q Consensus 542 ~~~~~~~~~~ 551 (637)
+++..|++..
T Consensus 510 l~~~~Pe~~~ 519 (822)
T PRK14574 510 VISRSPEDIP 519 (822)
T ss_pred HHhhCCCchh
Confidence 7777777765
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.80 E-value=3.8e-15 Score=153.14 Aligned_cols=440 Identities=12% Similarity=0.087 Sum_probs=328.2
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006636 73 RSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAF 152 (637)
Q Consensus 73 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 152 (637)
.+|-.+.++|-..|++++|...|.+.......-.+..+..+...+...|+++.+...|+.+.+.. +.+..+...|...|
T Consensus 308 es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Ly 386 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLY 386 (1018)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHH
Confidence 34667888999999999999999988865322124445567789999999999999999999875 66677888888888
Q ss_pred HhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH----hcCCCCCCHHHHHHHHHHHH
Q 006636 153 SESG----NMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMS----REGNVKPNLRTYNVLVRAWC 224 (637)
Q Consensus 153 ~~~g----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~~~~~li~~~~ 224 (637)
+..+ ..+.|..+..+..+..+ .|...|..+...+... ++..++..|.... ..+ -++-.+..|.+...+.
T Consensus 387 a~~~~~~~~~d~a~~~l~K~~~~~~-~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~-~~ip~E~LNNvaslhf 463 (1018)
T KOG2002|consen 387 AHSAKKQEKRDKASNVLGKVLEQTP-VDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKG-KQIPPEVLNNVASLHF 463 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcC-CCCCHHHHHhHHHHHH
Confidence 8775 56777788887777653 4788898888888654 4444466665443 333 2366789999999999
Q ss_pred hcCCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 006636 225 NEKNITEAWNVMHKMAAS---GMKPDV------VTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCK 295 (637)
Q Consensus 225 ~~g~~~~A~~~~~~~~~~---g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 295 (637)
..|++.+|...|...... ...+|. .+-..+..+....++.+.|.+.|..+.+..+ .-+..|..++.+.-.
T Consensus 464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp-~YId~ylRl~~ma~~ 542 (1018)
T KOG2002|consen 464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP-GYIDAYLRLGCMARD 542 (1018)
T ss_pred HhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc-hhHHHHHHhhHHHHh
Confidence 999999999999998765 223333 2334477888888999999999999988632 223444445444445
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCC-CCCCHHHHHHHHHHHHH---------
Q 006636 296 EGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR-VNPDVITYSTIMNAWST--------- 365 (637)
Q Consensus 296 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--------- 365 (637)
.+...+|...+....... ..++..+..+...+.....+.-|.+-|..+.+.. ..+|..+.-+|...|.+
T Consensus 543 k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ 621 (1018)
T KOG2002|consen 543 KNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNP 621 (1018)
T ss_pred ccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccCh
Confidence 678889999999988664 5677778888878888888888888666654432 23577776677765543
Q ss_pred ---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006636 366 ---AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRA 442 (637)
Q Consensus 366 ---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 442 (637)
.+..++|+++|.++++.. +.|...-|-+.-.++..|++.+|..+|.++.+.. ..+..+|-.+..+|...|++..|
T Consensus 622 ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 622 EKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHH
Confidence 345788999999999875 5588888999999999999999999999999874 45667899999999999999999
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHH------------------H
Q 006636 443 IEVFDKMCEH-GVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK--STFLLLA------------------E 501 (637)
Q Consensus 443 ~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~------------------~ 501 (637)
+++|+...+. ...-+......|.+++...|.+.+|.+.+..... ..|.. ..|+..+ .
T Consensus 700 IqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~--~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~ee 777 (1018)
T KOG2002|consen 700 IQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH--LAPSNTSVKFNLALVLKKLAESILRLEKRTLEE 777 (1018)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCCccchHHhHHHHHHHHHHHHHHhcccccHHH
Confidence 9999988754 4455777899999999999999999998877655 33332 2222111 1
Q ss_pred HHHHcCCHHHHHHHHHHHhhh
Q 006636 502 ARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 502 ~~~~~g~~~eA~~~~~~~~~~ 522 (637)
+....+.+++|.++|..+...
T Consensus 778 v~~a~~~le~a~r~F~~ls~~ 798 (1018)
T KOG2002|consen 778 VLEAVKELEEARRLFTELSKN 798 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 223345567788888887544
No 27
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.76 E-value=2.6e-13 Score=133.68 Aligned_cols=507 Identities=11% Similarity=0.051 Sum_probs=355.1
Q ss_pred CcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006636 69 CRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAV 148 (637)
Q Consensus 69 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (637)
++++..|-.. +...+.+.|+-++.+..+. ++.+...|. ++++...++.|..++.++.+. ++.+..+|.+-
T Consensus 377 P~sv~LWKaA----VelE~~~darilL~rAvec-cp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWita 446 (913)
T KOG0495|consen 377 PRSVRLWKAA----VELEEPEDARILLERAVEC-CPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITA 446 (913)
T ss_pred CchHHHHHHH----HhccChHHHHHHHHHHHHh-ccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHH
Confidence 3455555433 4456677788888888774 333444444 445556678888888887765 57788888877
Q ss_pred HHHHHhcCCHHHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHH
Q 006636 149 INAFSESGNMEEAMDTFWK----MKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPN-LRTYNVLVRAW 223 (637)
Q Consensus 149 l~~~~~~g~~~~A~~~~~~----m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~~li~~~ 223 (637)
...=-.+|+.+...+++++ +...|+..+...|..=...|-..|..-.+..+......-|.-.-| ..||+.-...|
T Consensus 447 a~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~ 526 (913)
T KOG0495|consen 447 AKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSC 526 (913)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHH
Confidence 7777778888887777765 345677778888888888888888888888887777765522222 46788888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 006636 224 CNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEAL 303 (637)
Q Consensus 224 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 303 (637)
.+.+.++-|..+|...++. ++.+...|...+..--..|..+.-..+|++....- +.....|.....-+...|++..|+
T Consensus 527 ~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 527 EKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred HhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHH
Confidence 8888888888888888765 34466777777766667788888888888887653 234556666677777888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 006636 304 RFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAG 383 (637)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 383 (637)
.++....+.. +-+...|-.-+........++.|..+|.+....+ ++...|.--+..-.-.+..++|++++++.++.
T Consensus 605 ~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~s--gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~- 680 (913)
T KOG0495|consen 605 VILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSIS--GTERVWMKSANLERYLDNVEEALRLLEEALKS- 680 (913)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC--CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-
Confidence 8888887764 3466788888888888888888888888877643 56666666666666678888888888887775
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006636 384 IKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFET 463 (637)
Q Consensus 384 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 463 (637)
++.-...|..+.+.+-+.++.+.|.+.|..-.+. .|-.+..|-.+...--+.|.+-.|..++++..-.+++ |...|..
T Consensus 681 fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle 758 (913)
T KOG0495|consen 681 FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLE 758 (913)
T ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHH
Confidence 3444667888888888888888888888776654 2445567777777777888888888888888776644 6778888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccc--------cccccccch
Q 006636 464 LMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERTN--------EMEAEEDIP 535 (637)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~--------~~~~~~~~a 535 (637)
.+..=.+.|..+.|..+..+..+. ..-+...|..-+.+..+.++--.+...+++... .||- -.+...+.|
T Consensus 759 ~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce~-dphVllaia~lfw~e~k~~ka 836 (913)
T KOG0495|consen 759 SIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH-DPHVLLAIAKLFWSEKKIEKA 836 (913)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhccC-CchhHHHHHHHHHHHHHHHHH
Confidence 888888888888888877666541 222344677777777777776666555555421 1111 013445666
Q ss_pred HHHHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhhhccccccCcccchhhhhcchhhh
Q 006636 536 VESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDADSSLECSWFATTSMYL 599 (637)
Q Consensus 536 ~~~~e~~~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~~~~k~~g~swi~~~~~~~ 599 (637)
+.=.++++..+|+++.. ...+...+...|.-++-..|.++-..... .-|..|+-|..-+-
T Consensus 837 r~Wf~Ravk~d~d~GD~--wa~fykfel~hG~eed~kev~~~c~~~EP--~hG~~W~avSK~i~ 896 (913)
T KOG0495|consen 837 REWFERAVKKDPDNGDA--WAWFYKFELRHGTEEDQKEVLKKCETAEP--THGELWQAVSKDIK 896 (913)
T ss_pred HHHHHHHHccCCccchH--HHHHHHHHHHhCCHHHHHHHHHHHhccCC--CCCcHHHHHhhhHH
Confidence 66678888888988763 33355566677876666666654433333 34778887765443
No 28
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=4.5e-13 Score=127.23 Aligned_cols=512 Identities=11% Similarity=0.051 Sum_probs=371.1
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006636 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 150 (637)
+...|..-.+-=..+++++.|+.+|++.+..+ ..+...|..-+..-.+++....|..++++++..= |.-...|-..+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHH
Confidence 44455555555566888999999999999854 5578888888888899999999999999998752 434456777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 006636 151 AFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNIT 230 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 230 (637)
+=-..|++..|.++|++-.+. .|+...|++.|+.-.+.+.++.|..++++..- +.|++.+|--....--+.|+..
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHH
Confidence 777889999999999998875 68999999999999999999999999999987 5699999999999999999999
Q ss_pred HHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCH---HHHHH
Q 006636 231 EAWNVMHKMAAS-G-MKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPN-GRTCGIIISGYCKEGKI---KEALR 304 (637)
Q Consensus 231 ~A~~~~~~~~~~-g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~---~~A~~ 304 (637)
.|..+|....+. | -..+...+++...-=.++..++.|.-+|+-.++.-+... ...|......--+.|+. ++++-
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 999999988753 1 011234555555555667889999999988876532211 33444444444445653 44432
Q ss_pred -----HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCH--HHHHH--------HHHHHHHcCCh
Q 006636 305 -----FARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDV--ITYST--------IMNAWSTAGFM 369 (637)
Q Consensus 305 -----~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~--------l~~~~~~~g~~ 369 (637)
-++++.+.+ +.|-.+|--.+..-...|+.+...++|+..+..- +|-. ..|.. .+-.-....++
T Consensus 305 ~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 244444443 6788899888888888999999999999998764 3321 11111 11112356889
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006636 370 DKCKEIFDDMGKAGIKPDAHAYSILAKGY----VREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEV 445 (637)
Q Consensus 370 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 445 (637)
+.+.++|+..++. ++-..+|+.-+--+| .++.++..|.+++...+.. .|...+|...|..-.+.++++....+
T Consensus 383 ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 383 ERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999998884 344555555544444 5789999999999998854 79999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc
Q 006636 446 FDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVH-PQKSTFLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 446 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
+++.++.++. |-.+|......=...|+.+.|..+|+-+.....- .....|...++--...|.++.|..+++++..+..
T Consensus 460 YEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 460 YEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 9999997643 6778888888888899999999999998754322 2233677888888899999999999999987765
Q ss_pred cc---------------cc-----------cccccchHHHHHHHHhh----hccCCCCCCcccccccccccCCCchhhhh
Q 006636 525 TN---------------EM-----------EAEEDIPVESLERLYHK----EATTASYPNLLQIPNVVSSDQKGSAAALK 574 (637)
Q Consensus 525 ~~---------------~~-----------~~~~~~a~~~~e~~~~~----~~~~~~y~~~~~L~~~y~~~g~~~~a~~~ 574 (637)
|. .. ..+...|+.+.+++... .|.......+-..-+.=...|.-.+...|
T Consensus 539 h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V 618 (677)
T KOG1915|consen 539 HVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERV 618 (677)
T ss_pred cchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHH
Confidence 52 01 11445566666766542 23222211111222334456777788888
Q ss_pred hhhccccc-----cCcccchh-hhhcc
Q 006636 575 KGRMLLRD-----ADSSLECS-WFATT 595 (637)
Q Consensus 575 r~~~~~~~-----~~k~~g~s-wi~~~ 595 (637)
.+.|-++- +..+-|++ |-|.-
T Consensus 619 ~s~mPk~vKKrr~~~~edG~~~~EEy~ 645 (677)
T KOG1915|consen 619 QSKMPKKVKKRRKIQREDGDTEYEEYF 645 (677)
T ss_pred HHhccHHHHhhhhhhcccCchhHHHHH
Confidence 87774332 22256655 55543
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=1.4e-12 Score=122.50 Aligned_cols=425 Identities=15% Similarity=0.169 Sum_probs=225.7
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChhHH-HHHHHHHHHCCCCCCHHHHHHH
Q 006636 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQK--RFNSI-HSIMSQVEENGMDPDSIFFNAV 148 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a-~~~~~~~~~~~~~~~~~~~~~l 148 (637)
+.+-|.|+. +..+|...++.-+|+.|...|++.+...-..|++..+-.+ +..-| .+.|-.|.+.| .....+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 444555554 4567899999999999999888877777666655433322 22211 12233333333 1122222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 006636 149 INAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN 228 (637)
Q Consensus 149 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 228 (637)
+.|.+.+ -+|+...+ +..++..||.+.++.-..+.|.+++.+-.... .+.+..+||.+|.+-.-..
T Consensus 191 -----K~G~vAd--L~~E~~PK-----T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k-~kv~~~aFN~lI~~~S~~~- 256 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFETLPK-----TDETVSIMIAGLCKFSSLERARELYKEHRAAK-GKVYREAFNGLIGASSYSV- 256 (625)
T ss_pred -----ccccHHH--HHHhhcCC-----CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh-heeeHHhhhhhhhHHHhhc-
Confidence 2333322 23333222 44566666666666666666666666555433 3455666666655433221
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH-HH
Q 006636 229 ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQ----AEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKE-AL 303 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~ 303 (637)
..+++.+|....+.||..|+|+++.+..+.|+++. |.+++.+|.+.|+.|...+|..+|..+++.++..+ |.
T Consensus 257 ---~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 257 ---GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred ---cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 14556666666666666666666666666665543 33445556666666666666666666665555432 33
Q ss_pred HHHHHHHHC----CC----CCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCC----CCCC---HHHHHHHHHHHHHcCC
Q 006636 304 RFARTMKEY----GV----HPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR----VNPD---VITYSTIMNAWSTAGF 368 (637)
Q Consensus 304 ~~~~~~~~~----~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~ 368 (637)
.++.++... .+ +.|..-|...+..|.+..+.+.|.++...+.... +.|+ .+-|..+..+.++...
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 333333221 11 1233344555555556566555555554443211 1122 1234455555566666
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----------
Q 006636 369 MDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDG----------- 437 (637)
Q Consensus 369 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------- 437 (637)
.+.-...|+.|+-.-+.|+..+...++++..-.+.++-..+++..++..|..-+...-.-++..+++..
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql 493 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQL 493 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 666666666666555556666666666666666666666666555555442222222222222222211
Q ss_pred ---------CHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCCHHHHHHHHHHH
Q 006636 438 ---------SMDRA-IEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFG----VHPQKSTFLLLAEAR 503 (637)
Q Consensus 438 ---------~~~~A-~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~l~~~~ 503 (637)
++.++ ...-.+|..... .....+..+..+.+.|+.++|.++|....+.+ ..|.......+++.-
T Consensus 494 ~~~~ak~aad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a 571 (625)
T KOG4422|consen 494 QVAFAKCAADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSA 571 (625)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHH
Confidence 11111 112233444333 44456666666788888888888887774322 234444555667777
Q ss_pred HHcCCHHHHHHHHHHHh
Q 006636 504 RATGLTKEAKRILSKIK 520 (637)
Q Consensus 504 ~~~g~~~eA~~~~~~~~ 520 (637)
.+....-.|...++-|.
T Consensus 572 ~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 572 KVSNSPSQAIEVLQLAS 588 (625)
T ss_pred HhcCCHHHHHHHHHHHH
Confidence 77788888888887774
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.72 E-value=5.9e-12 Score=124.31 Aligned_cols=429 Identities=9% Similarity=0.013 Sum_probs=256.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH----HCCCCCCHHHHHHHHHHHH
Q 006636 78 LMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVE----ENGMDPDSIFFNAVINAFS 153 (637)
Q Consensus 78 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~ll~~~~ 153 (637)
|--+|++..-++.|..+++...+. ++.+...|.+-...--.+|+.+....++++.+ ..|+..+...|..=...|-
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 344556666788888888888774 66688888777777777888877777766643 3466677777777667777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006636 154 ESGNMEEAMDTFWKMKESGLTPT--TSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITE 231 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 231 (637)
..|.+-.+..+....+..|+.-. ..+|+.-...|.+.+.++-|+.+|....+. ++.+...|...+..--..|..++
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHH
Confidence 77777777777776666665422 246666666777777777777777666654 34455666666666666666677
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006636 232 AWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 232 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
-..+|+++... .+-....|......+-..|+...|..++.+..+... .+...|..-+..-..+.+++.|..+|.+...
T Consensus 569 l~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 569 LEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 66777666654 233455565556666666777777777666665543 2456666666666666667777777766655
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006636 312 YGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAY 391 (637)
Q Consensus 312 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 391 (637)
. .++..+|.--+...--.+..++|.++++..++.- +.-...|..+...+.+.++++.|...|..-.+. .+..+..|
T Consensus 647 ~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLW 722 (913)
T KOG0495|consen 647 I--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLW 722 (913)
T ss_pred c--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHH
Confidence 4 3555555555554455566666666666665542 223345566666666666676666666654443 23345556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006636 392 SILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEA 471 (637)
Q Consensus 392 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 471 (637)
-.|...--+.|.+-.|..++++..-.+ |.|...|-..|..-.+.|+.+.|..+..++++. .+-+...|..-|....+.
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~ 800 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRP 800 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCc
Confidence 666666666666666776666666554 556666666666666667666666666555543 112233444444444444
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006636 472 RQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 472 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
++-..+.+.+++ .+-|+.....+...+....+++.|.++|++....
T Consensus 801 ~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 801 QRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK 846 (913)
T ss_pred ccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 433333333222 1223333334444444444444444444444443
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=7e-13 Score=124.40 Aligned_cols=364 Identities=16% Similarity=0.219 Sum_probs=240.5
Q ss_pred cCcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 006636 68 SCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNA 147 (637)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 147 (637)
-+.+..++..+|.++++-...+.|.+++++..+...+.+..+||.+|.+-.-. ...+++.+|....+.||..|+|+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHH
Confidence 45677889999999999999999999999988776788899999998775433 33778888988888999999999
Q ss_pred HHHHHHhcCCHHHH----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHhc--C-----CCCCCHHH
Q 006636 148 VINAFSESGNMEEA----MDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEE-SVKLLDLMSRE--G-----NVKPNLRT 215 (637)
Q Consensus 148 ll~~~~~~g~~~~A----~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~--~-----~~~~~~~~ 215 (637)
++...++.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++... | ..+.|...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 99999999987654 5677888999999999999999998888887744 44455555432 1 12335566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 006636 216 YNVLVRAWCNEKNITEAWNVMHKMAASG----MKPD---VVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGI 288 (637)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~~~~~g----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 288 (637)
|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+..+.++....+....+|+.|+-+-+-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 7778888888888888888776554321 2233 23345666777777888888888888877766677788888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-
Q 006636 289 IISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAG- 367 (637)
Q Consensus 289 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 367 (637)
++++..-.|.++-.-+++.+++..|..-+. +-.++++..+....+.|+...-..+-.+.+++.
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~----------------~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa 502 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRS----------------DLREEILMLLARDKLHPLTPEREQLQVAFAKCAA 502 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhH----------------HHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH
Confidence 888887888888888888777765522221 122334444444433343221112212111110
Q ss_pred Ch-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHHH
Q 006636 368 FM-DKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGF----HPNVVIFTTIISGWCSDGSMDRA 442 (637)
Q Consensus 368 ~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A 442 (637)
++ +.....-.++.+. .......+.++..+.+.|+.++|.++|..+.+.+. .|......-++..-.+..+...|
T Consensus 503 d~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA 580 (625)
T KOG4422|consen 503 DIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQA 580 (625)
T ss_pred HHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHH
Confidence 11 1111112223333 33455566666677888888888888888755432 22233333445555566667777
Q ss_pred HHHHHHHHHCC
Q 006636 443 IEVFDKMCEHG 453 (637)
Q Consensus 443 ~~~~~~m~~~~ 453 (637)
+.+++-|...+
T Consensus 581 ~~~lQ~a~~~n 591 (625)
T KOG4422|consen 581 IEVLQLASAFN 591 (625)
T ss_pred HHHHHHHHHcC
Confidence 77777775543
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.71 E-value=4.8e-12 Score=129.91 Aligned_cols=369 Identities=13% Similarity=0.131 Sum_probs=259.1
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006636 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVI 149 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 149 (637)
+.+...-..++.+.-.|++++|..++.+++... +.+...|.+|...|-..|+.+++...+-.+.... +.|...|..+.
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~la 214 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLA 214 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 335555555666666799999999999999864 4588899999999999999999988776666554 77889999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH-HHH----HHHHHHHH
Q 006636 150 NAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNL-RTY----NVLVRAWC 224 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~----~~li~~~~ 224 (637)
....+.|+++.|.-.|.+.++..++ +...+---+..|-+.|+...|.+-|.++.... ||.. .-+ -.+++.+.
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~--p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLD--PPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998644 55555566788999999999999999998864 3322 222 33455666
Q ss_pred hcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-----------------------
Q 006636 225 NEKNITEAWNVMHKMAASG-MKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQ----------------------- 280 (637)
Q Consensus 225 ~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----------------------- 280 (637)
..++-+.|.+.++.....+ -..+...++.++..+.+...++.|......+.....+
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~ 371 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVG 371 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCC
Confidence 7777799999988887622 2335567788888999999999998887776552111
Q ss_pred ----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHH
Q 006636 281 ----PNGRTCGIIISGYCKEGKIKEALRFARTMKEYG--VHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVI 354 (637)
Q Consensus 281 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 354 (637)
++..++ .+.-++......+....+........ +..+...|.-+..+|.+.|.+.+|..++..+.......+..
T Consensus 372 ~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~ 450 (895)
T KOG2076|consen 372 KELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAF 450 (895)
T ss_pred CCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchh
Confidence 122221 11222233333333333333333333 23345577778888888888888888888887766555677
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------CCCCCCHHHH
Q 006636 355 TYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIE--------SGFHPNVVIF 426 (637)
Q Consensus 355 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~ 426 (637)
.|-.+..+|...|..+.|.+.|..++... +.+..+-..|...|.+.|+.++|.+.+..+.. .+..|+....
T Consensus 451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~ 529 (895)
T KOG2076|consen 451 VWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRIL 529 (895)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHH
Confidence 78888888888888888888888887763 34566666777778888888888888877542 2234444444
Q ss_pred HHHHHHHHhcCCHHHHHHH
Q 006636 427 TTIISGWCSDGSMDRAIEV 445 (637)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~ 445 (637)
-.....+.+.|+.++-+.+
T Consensus 530 ~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 530 AHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHHHhhhHHHHHHH
Confidence 4455556666666554443
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=5.9e-14 Score=132.25 Aligned_cols=439 Identities=15% Similarity=0.150 Sum_probs=222.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHHHCCCCCC------HHHHHH
Q 006636 75 MTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYT-TLLAALTIQKRFNSIHSIMSQVEENGMDPD------SIFFNA 147 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ 147 (637)
...|.+.|..+....+|+..|+-+.+...-|+.-... .+...+.+...+..|++.|+..+.. .|. ..+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rikil~n 281 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHHhh
Confidence 4456677777788889999998887765556554332 2345677778899999999877654 232 234556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-----------CCCHHHH
Q 006636 148 VINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNV-----------KPNLRTY 216 (637)
Q Consensus 148 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----------~~~~~~~ 216 (637)
+.-.+.+.|++++|+.-|+...+. .|+..+-..|+-++...|+-++..+.|.+|....+. .|+....
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 666678899999999999998775 367776666666777889999999999998753211 1233333
Q ss_pred HHHH-----HHHHhcC--CHHHHHHHHHHHHHCCCCCCHHH---H------------------HHHHHHHHHcCCHHHHH
Q 006636 217 NVLV-----RAWCNEK--NITEAWNVMHKMAASGMKPDVVT---Y------------------NTIATAYAQNGEADQAE 268 (637)
Q Consensus 217 ~~li-----~~~~~~g--~~~~A~~~~~~~~~~g~~~~~~~---~------------------~~li~~~~~~g~~~~A~ 268 (637)
+-.+ .-.-+.. +.++++-.--++...-+.||-.. | ..-..-+.++|+++.|.
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ai 439 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAI 439 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHH
Confidence 2222 2222211 12222222222222212222100 0 01234577889999998
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhh
Q 006636 269 EVIVEMEHNGVQPNGRTCGIIISGYCK--EGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKE 346 (637)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 346 (637)
++++-..+..-..-...-+.|-..+.- ..++..|.++-+...... +-+......-.+.-...|+++.|.+.+++...
T Consensus 440 eilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 440 EILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred HHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 888777654322222222222221111 223444444444443221 22222222222222334555555555555544
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006636 347 FRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIF 426 (637)
Q Consensus 347 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 426 (637)
....-....|+ +.-.+...|++++|+..|-++..- +..+..+...+...|....+...|++++-+.... ++.|+.+.
T Consensus 519 ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 519 NDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred CchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 32111111122 222334455555555555443321 1224444444555555555555555555444433 34445555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHH
Q 006636 427 TTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLA-EARRA 505 (637)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~-~~~~~ 505 (637)
..|...|-+.|+-..|.+.+-+-... ++-|..+...|..-|....-+++++.+|++..- +.|+..-|..|+ .++.|
T Consensus 596 skl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHh
Confidence 55555555555555555444333222 223444544455555555555555555554432 445555554433 23344
Q ss_pred cCCHHHHHHHHHHHhhhhc
Q 006636 506 TGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 506 ~g~~~eA~~~~~~~~~~~~ 524 (637)
.|++..|..+++....+.|
T Consensus 673 sgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred cccHHHHHHHHHHHHHhCc
Confidence 4555555555555544433
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.67 E-value=4.5e-12 Score=130.06 Aligned_cols=363 Identities=13% Similarity=0.132 Sum_probs=266.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006636 112 TLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAG 191 (637)
Q Consensus 112 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 191 (637)
.....+...|++++|..++.++++.. +.+...|..|...|-..|+.+++...+-......+. |...|..+.....+.|
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcc
Confidence 33444556699999999999999886 778899999999999999999999888777666544 7789999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHHcCCHHHH
Q 006636 192 KPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYN----TIATAYAQNGEADQA 267 (637)
Q Consensus 192 ~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~----~li~~~~~~g~~~~A 267 (637)
.++.|.-.|.+..+.. |++...+---...|-+.|+...|..-|.++.....+.|..-+. ..+..+...++-+.|
T Consensus 222 ~i~qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 222 NINQARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred cHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999875 6676677777888999999999999999998874322322222 345567777888999
Q ss_pred HHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------------------------CCCHH
Q 006636 268 EEVIVEMEHNG-VQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGV---------------------------HPNLV 319 (637)
Q Consensus 268 ~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---------------------------~~~~~ 319 (637)
.+.++.....+ -..+...++.++..|.+...++.|......+..... .++..
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 99888876622 224566788999999999999999988877765211 22222
Q ss_pred HHHHHHHHHHHcCCHhhHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006636 320 IFNLLIKGFVEIMDRDGVDEVLALMKEFR--VNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKG 397 (637)
Q Consensus 320 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 397 (637)
++ -+.-++......+....+...+.... +.-+...|.-+..+|...|++..|+.+|..+.......+..+|-.+..+
T Consensus 380 v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 380 VI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 21 12222333344444444444444444 3335667888888888889999999888888876545567788888888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHH
Q 006636 398 YVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE--------HGVSPNLKTFETLMWGYS 469 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~p~~~~~~~l~~~~~ 469 (637)
|...|..+.|.+.|+.++... |.+...-..|-..+-+.|+.++|.++++.+.. .+..|+..........+.
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 888888999998888888764 55666677777788888888888888887542 234445555555666777
Q ss_pred hcCChhHHHHH
Q 006636 470 EARQPWRAEEI 480 (637)
Q Consensus 470 ~~g~~~~A~~~ 480 (637)
..|+.++=+..
T Consensus 538 ~~gk~E~fi~t 548 (895)
T KOG2076|consen 538 QVGKREEFINT 548 (895)
T ss_pred HhhhHHHHHHH
Confidence 77777664443
No 35
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.2e-12 Score=125.07 Aligned_cols=418 Identities=12% Similarity=0.070 Sum_probs=256.4
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006636 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPS-LVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 150 (637)
...+-...+-+.++|++++|++.|.+.++. .|+ +.-|.....+|...|+|+++.+--.+.++.+ +.-+..+..-..
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRAS 191 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHH
Confidence 444556678889999999999999999984 677 7888889999999999999998888777753 333456666677
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH--------HHHHh--cCCCCCCHHHHHHHH
Q 006636 151 AFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLL--------DLMSR--EGNVKPNLRTYNVLV 220 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~--------~~m~~--~~~~~~~~~~~~~li 220 (637)
++-..|++++|+.=. +..++..++....-.-.+.+++ .+-.+ ...+-|+.....+..
T Consensus 192 A~E~lg~~~eal~D~-------------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf 258 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDV-------------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYF 258 (606)
T ss_pred HHHhhccHHHHHHhh-------------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHH
Confidence 777888888775322 2222222222222222222222 11111 112334444433333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHh---CCCCCC---------hhhHH
Q 006636 221 RAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQ-NGEADQAEEVIVEMEH---NGVQPN---------GRTCG 287 (637)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~---~~~~~~---------~~~~~ 287 (637)
..+...-. ..+...+-..|...-..+=..+.. ...+..|...+.+-.. .....+ ..+..
T Consensus 259 ~sF~~~~~--------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~ 330 (606)
T KOG0547|consen 259 GSFHADPK--------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALL 330 (606)
T ss_pred hhcccccc--------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHH
Confidence 33211000 000000000011100001000100 0122223222222110 000011 12222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 006636 288 IIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAG 367 (637)
Q Consensus 288 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 367 (637)
.....+.-.|+.-.|..-|+..++... .+...|--+..+|....+.++....|....+.++ .++.+|-.-...+.-.+
T Consensus 331 ~~gtF~fL~g~~~~a~~d~~~~I~l~~-~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~ 408 (606)
T KOG0547|consen 331 LRGTFHFLKGDSLGAQEDFDAAIKLDP-AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQ 408 (606)
T ss_pred HhhhhhhhcCCchhhhhhHHHHHhcCc-ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHH
Confidence 223344557888888888888887652 2333377777778888888888888888887764 35566666666777788
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006636 368 FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFD 447 (637)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 447 (637)
++++|..-|++.+... +.+...|-.+.-+..+.+.++++...|++.++. +|.-+..|+.....+...++++.|.+.|+
T Consensus 409 q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 409 QYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 8999999999888764 335666767777777888999999999998876 56677888888888999999999999999
Q ss_pred HHHHCCCC-----CCHHHH--HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Q 006636 448 KMCEHGVS-----PNLKTF--ETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS-TFLLLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 448 ~m~~~~~~-----p~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
..++.... .+...+ -+++..=+ .+++..|..++++..+ +.|.-+ .|..|.....+.|+.++|+++|++.
T Consensus 487 ~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 487 KAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88874211 122222 22222222 3788889999988877 556644 7888999999999999999999887
Q ss_pred h
Q 006636 520 K 520 (637)
Q Consensus 520 ~ 520 (637)
.
T Consensus 564 a 564 (606)
T KOG0547|consen 564 A 564 (606)
T ss_pred H
Confidence 4
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.66 E-value=1.1e-12 Score=132.90 Aligned_cols=289 Identities=10% Similarity=0.045 Sum_probs=147.7
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHH
Q 006636 190 AGKPEESVKLLDLMSREGNVKPNLRT-YNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYN--TIATAYAQNGEADQ 266 (637)
Q Consensus 190 ~g~~~~A~~~~~~m~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~--~li~~~~~~g~~~~ 266 (637)
.|+++.|.+.+....+.. ++... +........+.|+++.|...+.++.+. .|+..... .....+...|+++.
T Consensus 97 eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 466666665555544321 12222 222233335556666666666665543 23322211 22445555566666
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhh
Q 006636 267 AEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKE 346 (637)
Q Consensus 267 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 346 (637)
|...++++.+..+ .+......+...|.+.|++++|..++..+.+.+..+ ......+-
T Consensus 172 Al~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~-~~~~~~l~--------------------- 228 (398)
T PRK10747 172 ARHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD-EEHRAMLE--------------------- 228 (398)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC-HHHHHHHH---------------------
Confidence 6666655555432 234555555555555566666665555555543221 11111000
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006636 347 FRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIF 426 (637)
Q Consensus 347 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 426 (637)
..+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+. +||....
T Consensus 229 ------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~ 299 (398)
T PRK10747 229 ------QQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV 299 (398)
T ss_pred ------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH
Confidence 001111222222223334444444444332 2345566666666666677777777766666653 3444221
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006636 427 TTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRAT 506 (637)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 506 (637)
++.+....++.+++++..++..+... -|+..+..+...|.+.|++++|.+.|+.+.+ ..|+...+..+..++.+.
T Consensus 300 --~l~~~l~~~~~~~al~~~e~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~ 374 (398)
T PRK10747 300 --LLIPRLKTNNPEQLEKVLRQQIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRL 374 (398)
T ss_pred --HHHhhccCCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHc
Confidence 22233344666667776666665432 2444566666677777777777777766665 556666666677777777
Q ss_pred CCHHHHHHHHHHHh
Q 006636 507 GLTKEAKRILSKIK 520 (637)
Q Consensus 507 g~~~eA~~~~~~~~ 520 (637)
|+.++|.+++++..
T Consensus 375 g~~~~A~~~~~~~l 388 (398)
T PRK10747 375 HKPEEAAAMRRDGL 388 (398)
T ss_pred CCHHHHHHHHHHHH
Confidence 77777766666553
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=4.2e-13 Score=126.59 Aligned_cols=430 Identities=12% Similarity=0.059 Sum_probs=280.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHH
Q 006636 112 TLLAALTIQKRFNSIHSIMSQVEENGMDPDSIF-FNAVINAFSESGNMEEAMDTFWKMKESGLTPT----TSTYNTLIKG 186 (637)
Q Consensus 112 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~ 186 (637)
.|..-|....-..+|+..|+-+.+...-|+.-. -..+...+.+...+.+|+++|+-....-+..+ ....+.+.-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 344555556667889999988887766666433 23345667788899999999987765422222 2234444556
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------------CCHHHHHHH
Q 006636 187 YGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMK------------PDVVTYNTI 254 (637)
Q Consensus 187 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~------------~~~~~~~~l 254 (637)
+.+.|+++.|+..|+...+.. |+..+-..|+-++..-|+.++..+.|.+|...-.. |+....+.-
T Consensus 286 fiq~gqy~dainsfdh~m~~~---pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ea 362 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEA---PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEA 362 (840)
T ss_pred EEecccchhhHhhHHHHHHhC---ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHH
Confidence 788999999999999998864 88888777888888899999999999999865322 233333322
Q ss_pred HH-----HHHHcC--CHHHHHHHHHHHHhCCCCCChhh---H------------------HHHHHHHHhcCCHHHHHHHH
Q 006636 255 AT-----AYAQNG--EADQAEEVIVEMEHNGVQPNGRT---C------------------GIIISGYCKEGKIKEALRFA 306 (637)
Q Consensus 255 i~-----~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~---~------------------~~li~~~~~~g~~~~A~~~~ 306 (637)
+. -..+.+ +.++++-.-.+++..-+.|+... | -.-..-|.+.|+++.|++++
T Consensus 363 i~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 363 IKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred HhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence 21 111111 12222222222222112222110 0 11244788999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHH-HHHHH-cCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 006636 307 RTMKEYGVHPNLVIFNLLI-KGFVE-IMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGI 384 (637)
Q Consensus 307 ~~~~~~~~~~~~~~~~~ll-~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 384 (637)
+-..+..-+.-...-+.+- --|.+ -.++..|...-....... ..+......-...-...|++++|...+++.+...-
T Consensus 443 kv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda 521 (840)
T KOG2003|consen 443 KVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA 521 (840)
T ss_pred HHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch
Confidence 9887653222222222222 22233 345667776666655432 22333333333344568999999999999986531
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006636 385 KPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETL 464 (637)
Q Consensus 385 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 464 (637)
........+.-.+-+.|++++|++.|-++... +..+..+...+...|-...+...|++++-+.... ++-|+..+..|
T Consensus 522 -sc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl 598 (840)
T KOG2003|consen 522 -SCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKL 598 (840)
T ss_pred -HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHH
Confidence 12233333445678999999999999887653 2457788888999999999999999999887664 55578899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccc-----------ccccccc
Q 006636 465 MWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERTN-----------EMEAEED 533 (637)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~-----------~~~~~~~ 533 (637)
...|-+.|+...|.+++-.--++ +.-+.++..-+..-|....-++.|+.+|+++.-..|.. ...++.+
T Consensus 599 ~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyq 677 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQ 677 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHH
Confidence 99999999999999876543221 33456677777778888889999999999985333321 2346777
Q ss_pred chHHHHHHHHhhhccC
Q 006636 534 IPVESLERLYHKEATT 549 (637)
Q Consensus 534 ~a~~~~e~~~~~~~~~ 549 (637)
.|...++.+-..-|.+
T Consensus 678 ka~d~yk~~hrkfped 693 (840)
T KOG2003|consen 678 KAFDLYKDIHRKFPED 693 (840)
T ss_pred HHHHHHHHHHHhCccc
Confidence 7777766665544544
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=6e-11 Score=112.93 Aligned_cols=293 Identities=14% Similarity=0.083 Sum_probs=171.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcC
Q 006636 220 VRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQ--PNGRTCGIIISGYCKEG 297 (637)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g 297 (637)
..++....+.++++.-.......|++.+...-+....+.....++++|+.+|+++.+..+- .|..+|+.++ |.+..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhh
Confidence 3444455566666666666666666555555555555556666777777777777665221 1344554443 22222
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 006636 298 KIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFD 377 (637)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 377 (637)
+-. +.++.+-...--+-.+.|...+.+-|+-.++.+.|...|+...+.++ .....|+.+..-|....+...|+..++
T Consensus 312 ~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 211 11111111100123344555566666666667777777777766653 345566666677777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006636 378 DMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPN 457 (637)
Q Consensus 378 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 457 (637)
..++-. +.|-..|-.|.++|.-.+...-|+-.|++..+.. |.|...|.+|+.+|.+.++.++|++.|......|-. +
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e 465 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-E 465 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-c
Confidence 776654 4466677777777777777777777777776653 556677777777777777777777777777665432 4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006636 458 LKTFETLMWGYSEARQPWRAEEILQIMKA----FGVHPQ--KSTFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
...+..|...+-+.++..+|..+|++-.+ .|...+ .....-+..-+.+.+++++|..+.....
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 56677777777777777777766665432 222222 1122224445566677777766665553
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.64 E-value=1.5e-12 Score=132.64 Aligned_cols=259 Identities=11% Similarity=0.023 Sum_probs=133.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHh
Q 006636 256 TAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRD 335 (637)
Q Consensus 256 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 335 (637)
.++.+.|+++.|.+.+.+..+....+...........+...|+++.|...++.+.+.. +.+...+..+...+.+.|+++
T Consensus 126 ~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 126 EAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHH
Confidence 3444444444444444444332211111122223444444455555555555544442 233344444444555555555
Q ss_pred hHHHHHHHHhhCCCCCCHHHHH-HHHHHH---HHcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCHHHHH
Q 006636 336 GVDEVLALMKEFRVNPDVITYS-TIMNAW---STAGFMDKCKEIFDDMGKAG---IKPDAHAYSILAKGYVREQEPEKAE 408 (637)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~ 408 (637)
++.+.+..+.+.++. +...+. .-..++ ...+..+.+...+..+.+.. .+.+...+..++..+...|+.++|.
T Consensus 205 ~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~ 283 (409)
T TIGR00540 205 ALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQ 283 (409)
T ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHH
Confidence 555555554444322 111111 111111 11112222222333333221 1136677777777777777777777
Q ss_pred HHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHH
Q 006636 409 ELLMTMIESGFHPNVVI---FTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNL--KTFETLMWGYSEARQPWRAEEILQI 483 (637)
Q Consensus 409 ~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~ 483 (637)
+++++..+.. ||... ...........++.+.+++.+++..+... -|+ ....++...|.+.|++++|.++|+.
T Consensus 284 ~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p-~~~~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 284 EIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD-DKPKCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred HHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 7777777652 33221 11122222344667777777777766421 133 4556777788888888888888885
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006636 484 MKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 484 m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
.......|+.+.+..+..++.+.|+.++|.+++++.
T Consensus 361 a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 361 VAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred hHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 433346677777778888888888888888887765
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=2.5e-12 Score=131.05 Aligned_cols=289 Identities=12% Similarity=0.039 Sum_probs=187.4
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006636 189 IAGKPEESVKLLDLMSREGNVKPN-LRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQA 267 (637)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 267 (637)
..|+++.|.+.+.+..+.. |+ ...+-....++...|+.+.|...+.+..+....++..........+...|+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~~---~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA---AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4677777777776665542 33 3333444556666777777777777765542122222333346666777777777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HHcCCHhhHHHHHHH
Q 006636 268 EEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFN-LLIKGF---VEIMDRDGVDEVLAL 343 (637)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ll~~~---~~~~~~~~a~~~~~~ 343 (637)
...++.+.+..+ .+..++..+...|.+.|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+...+.+..
T Consensus 173 l~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 777777776643 34566667777777777777777777777766532 222221 111111 222222222334433
Q ss_pred HhhCCC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHH--HHHcCCHHHHHHHHHHHHHC
Q 006636 344 MKEFRV---NPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHA-YSILAKG--YVREQEPEKAEELLMTMIES 417 (637)
Q Consensus 344 ~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~--~~~~g~~~~A~~~~~~~~~~ 417 (637)
+.+..+ +.+...+..+...+...|+.++|.+++++..+.. ||... ...++.. ....++.+.+.+.+++..+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 333221 2377888888889999999999999999988864 33321 1012222 23457788899999888776
Q ss_pred CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006636 418 GFHPNV--VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 418 ~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
. +.|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++..
T Consensus 329 ~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 329 V-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred C-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3 5566 67789999999999999999999964444456899989999999999999999999998753
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.63 E-value=3.9e-12 Score=128.89 Aligned_cols=289 Identities=12% Similarity=0.088 Sum_probs=192.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHH--HHHHHHHhcCCHH
Q 006636 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTL-IKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYN--VLVRAWCNEKNIT 230 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~--~li~~~~~~g~~~ 230 (637)
..|+++.|++.+....+.. +++..+..+ .....+.|+++.|.+.+.++.+. .|+..... .....+...|+++
T Consensus 96 ~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHH
Confidence 3699999999888876642 223333333 45557899999999999999875 35543332 3467889999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHH-HHHHhcCCHHHHHHHHHHH
Q 006636 231 EAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIII-SGYCKEGKIKEALRFARTM 309 (637)
Q Consensus 231 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~ 309 (637)
.|...++++.+.. +-++.....+...|.+.|++++|.+++..+.+.+..+ ......+- .+|
T Consensus 171 ~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~---------------- 232 (398)
T PRK10747 171 AARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD-EEHRAMLEQQAW---------------- 232 (398)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH----------------
Confidence 9999999998875 4467888899999999999999999999999876532 22221110 111
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 006636 310 KEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAH 389 (637)
Q Consensus 310 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 389 (637)
..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|..++++..+. +++..
T Consensus 233 ------------~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~ 297 (398)
T PRK10747 233 ------------IGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER 297 (398)
T ss_pred ------------HHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH
Confidence 00111111112223334444443322 1345666667777777777777777777777663 34442
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006636 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYS 469 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 469 (637)
.. ++.+....++.+++++..+...+.. +.|...+..+...|...|++++|.+.|+++.+ ..|+..++..+..++.
T Consensus 298 l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~ 372 (398)
T PRK10747 298 LV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALD 372 (398)
T ss_pred HH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHH
Confidence 22 2233334577777777777777663 55666677777777778888888888877776 3477777777777777
Q ss_pred hcCChhHHHHHHHHHH
Q 006636 470 EARQPWRAEEILQIMK 485 (637)
Q Consensus 470 ~~g~~~~A~~~~~~m~ 485 (637)
+.|+.++|.+++++-.
T Consensus 373 ~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 373 RLHKPEEAAAMRRDGL 388 (398)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 8888888877777653
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.61 E-value=5.5e-15 Score=143.09 Aligned_cols=262 Identities=13% Similarity=0.122 Sum_probs=102.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006636 77 KLMNSLIERGKPQEAQAIFNNLIEGG-HKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSES 155 (637)
Q Consensus 77 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 155 (637)
.+...+.+.|++++|++++....... .+.|+..|..+...+...++++.|...++++...+ +.+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 34677778889999988886554432 12344555555556667788888888888888765 3456667777766 678
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006636 156 GNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNV 235 (637)
Q Consensus 156 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 235 (637)
+++++|.+++++..+.. ++...+..++..+.+.++++++.++++.+......+++...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888887765542 4566677788888888888888888888776544456777888888888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006636 236 MHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVH 315 (637)
Q Consensus 236 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 315 (637)
+++..+.. +.|....+.++..+...|+.+++.+++....+.. +.|...+..+..+|...|+.++|+..|++..+.. +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 88888763 2246677788888888888888888777776553 3456677788888888888888888888887653 5
Q ss_pred CCHHHHHHHHHHHHHcCCHhhHHHHHHHHh
Q 006636 316 PNLVIFNLLIKGFVEIMDRDGVDEVLALMK 345 (637)
Q Consensus 316 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 345 (637)
.|+.+...+..++...|+.++|.++..++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 577777778888888888888877776653
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.61 E-value=4.1e-15 Score=143.95 Aligned_cols=257 Identities=16% Similarity=0.147 Sum_probs=61.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 006636 220 VRAWCNEKNITEAWNVMHKMAASG-MKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGK 298 (637)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 298 (637)
...+.+.|++++|++++++..... .+.|...|..+...+...++++.|...++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 444455555555555553332221 1223333334444444455555555555555443321 33334444444 44555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 006636 299 IKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR-VNPDVITYSTIMNAWSTAGFMDKCKEIFD 377 (637)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 377 (637)
+++|.+++....+. .++...+...+..+...++++.+.++++.+.... .+.+...|..+...+.+.|+.++|+..++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555554444322 2333334444444444455555555444443211 12334444444444555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006636 378 DMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPN 457 (637)
Q Consensus 378 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 457 (637)
+.++.. +.|..+...++..+...|+.+++..++....+.. +.|+..|..+..+|...|+.++|+..|++..+... .|
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p-~d 247 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP-DD 247 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST-T-
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc-cc
Confidence 554432 1234444445555555555555444444444332 33334444555555555555555555555444321 14
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHH
Q 006636 458 LKTFETLMWGYSEARQPWRAEEILQI 483 (637)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 483 (637)
+.....+..++...|+.++|.++.++
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHHHT--------------
T ss_pred cccccccccccccccccccccccccc
Confidence 44444455555555555555544443
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.8e-10 Score=109.67 Aligned_cols=312 Identities=15% Similarity=0.155 Sum_probs=232.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHH
Q 006636 183 LIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGM--KPDVVTYNTIATAYAQ 260 (637)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~~ 260 (637)
+..++....+.++++.-.+.....| ++.+...-+....+.-...++++|+.+|+++.+... --|..+|+.++- .+
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~g-f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~ 309 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVG-FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HH
Confidence 3455666667888888888887776 555555555566667788999999999999998731 125677776653 33
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHH
Q 006636 261 NGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEV 340 (637)
Q Consensus 261 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 340 (637)
+.+-.-+ .+.+-.-.--+--+.|+..+.+-|.-.++.++|..+|++..+.+ +.....|+.+..-|....+...|.+.
T Consensus 310 ~~~skLs--~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 310 NDKSKLS--YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hhhHHHH--HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 3322211 11111111012245778888999999999999999999999876 55677899999999999999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 006636 341 LALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFH 420 (637)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 420 (637)
++..++.. +.|-..|-.|..+|.-.+...-|+-.|++..... +.|...|.+|...|.+.++.++|++.|......| .
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 99999987 4589999999999999999999999999998864 5689999999999999999999999999999876 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 006636 421 PNVVIFTTIISGWCSDGSMDRAIEVFDKMCE----HGVSPNLKTF---ETLMWGYSEARQPWRAEEILQIMKAFGVHPQK 493 (637)
Q Consensus 421 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 493 (637)
.+...+..+...|-+.++.++|...|++-++ .|.. +..|. .-|..-+.+.+++++|..+.......
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~-~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~------ 536 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEI-DDETIKARLFLAEYFKKMKDFDEASYYATLVLKG------ 536 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC------
Confidence 4668999999999999999999999988765 2333 33222 22444555666666665544333221
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006636 494 STFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 494 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
.-..+||..+++.+...
T Consensus 537 ------------~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 537 ------------ETECEEAKALLREIRKI 553 (559)
T ss_pred ------------CchHHHHHHHHHHHHHh
Confidence 23457788777776443
No 45
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=1.2e-09 Score=104.41 Aligned_cols=438 Identities=11% Similarity=0.056 Sum_probs=323.0
Q ss_pred cCcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006636 68 SCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSL-VTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
..+++..|..-+.+=.++.....|+.++++.... .|-+ ..|.-.+..--..|+...|.++|++-.. ..|+...|+
T Consensus 103 d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~ 178 (677)
T KOG1915|consen 103 DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWL 178 (677)
T ss_pred ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHH
Confidence 3467788888899999999999999999999874 4433 2455555555567999999999998766 489999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHh
Q 006636 147 AVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGN-VKPNLRTYNVLVRAWCN 225 (637)
Q Consensus 147 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~~li~~~~~ 225 (637)
+.|+.=.+-..++.|..++++.+-. .|++.+|......-.++|....|..+|+...+.-+ -..+...+.+....-.+
T Consensus 179 sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~ 256 (677)
T KOG1915|consen 179 SFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEER 256 (677)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998864 48999999999999999999999999998876420 01123345555555567
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHH--------HHHHHhCCCCCChhhHHHHHHHHHh
Q 006636 226 EKNITEAWNVMHKMAASGMKPD--VVTYNTIATAYAQNGEADQAEEV--------IVEMEHNGVQPNGRTCGIIISGYCK 295 (637)
Q Consensus 226 ~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~--------~~~~~~~~~~~~~~~~~~li~~~~~ 295 (637)
+..++.|.-+|+-.++. ++.+ ...|......=-+-|+....... |+.+++.+ +.|-.+|-..++.-..
T Consensus 257 qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~ 334 (677)
T KOG1915|consen 257 QKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEES 334 (677)
T ss_pred HHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHh
Confidence 88899999999988876 2333 34444444444445654433332 34455443 3577788888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH--HHHHHH--------HHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHH--
Q 006636 296 EGKIKEALRFARTMKEYGVHPNLV--IFNLLI--------KGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAW-- 363 (637)
Q Consensus 296 ~g~~~~A~~~~~~~~~~~~~~~~~--~~~~ll--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-- 363 (637)
.|+.+...++|++.+..- +|-.. .|.-.| -.-....+.+.+.++++..++. ++...+||.-+=-.|
T Consensus 335 ~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~ 412 (677)
T KOG1915|consen 335 VGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQ 412 (677)
T ss_pred cCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHH
Confidence 999999999999998763 44211 222111 1123567888899999988874 455566666554444
Q ss_pred --HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006636 364 --STAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDR 441 (637)
Q Consensus 364 --~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 441 (637)
.++.++..|.+++...+. .-|...++...|..-.+.++++.+.+++++.++-+ |.|-.+|......-...|+.+.
T Consensus 413 feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdR 489 (677)
T KOG1915|consen 413 FEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDR 489 (677)
T ss_pred HHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHH
Confidence 367889999999998764 47889999999999999999999999999999876 6788999999888889999999
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----HcC--------
Q 006636 442 AIEVFDKMCEHG-VSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARR-----ATG-------- 507 (637)
Q Consensus 442 A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~-----~~g-------- 507 (637)
|..+|+-++... +......|-+.|..=...|..+.|..+++++.+. .+-...|..+..--. ..|
T Consensus 490 aRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~ 567 (677)
T KOG1915|consen 490 ARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEI 567 (677)
T ss_pred HHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhc
Confidence 999999998752 2223446777777778899999999999999762 233334444443222 333
Q ss_pred ---CHHHHHHHHHHHh
Q 006636 508 ---LTKEAKRILSKIK 520 (637)
Q Consensus 508 ---~~~eA~~~~~~~~ 520 (637)
.+..|..+|+++.
T Consensus 568 ~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 568 TDENIKRARKIFERAN 583 (677)
T ss_pred chhHHHHHHHHHHHHH
Confidence 4567777777764
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=2.2e-12 Score=128.41 Aligned_cols=286 Identities=17% Similarity=0.091 Sum_probs=223.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHH
Q 006636 227 KNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGV--QPNGRTCGIIISGYCKEGKIKEALR 304 (637)
Q Consensus 227 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~ 304 (637)
-+..+|...|..+... +.-...+...+..+|...+++++|+++|+.+.+... -.+..+|.+.+--+-+ +-++.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 4567888999886554 233446667788999999999999999999876521 1255667766554422 22333
Q ss_pred HH-HHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 006636 305 FA-RTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAG 383 (637)
Q Consensus 305 ~~-~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 383 (637)
++ +.+++.. +..+.+|.++.+.|.-.++.+.|++.|+..++.++ ....+|+.+..-+.....+|.|...|+..+...
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 33 3333332 56788999999999999999999999999988652 377888888888889999999999999987643
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006636 384 IKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFET 463 (637)
Q Consensus 384 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 463 (637)
+.+-.+|.-|...|.|+++++.|+-.|+++.+.+ |.+.+....++..+.+.|+.++|+.+|+++...+.+ |+..--.
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 2245566667888999999999999999999876 667888888899999999999999999999987654 6666666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhhhc
Q 006636 464 LMWGYSEARQPWRAEEILQIMKAFGVHPQKS-TFLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
.+..+...++.++|+..++++++ +.|+.. .+..++..|.+.|+.+.|..-|.-+....|
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 67778889999999999999988 777765 678899999999999999988877655544
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=4.3e-11 Score=108.77 Aligned_cols=222 Identities=12% Similarity=0.081 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 006636 157 NMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPN--LRTYNVLVRAWCNEKNITEAWN 234 (637)
Q Consensus 157 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~ 234 (637)
+.++|.++|-+|.+.... +..+-.+|.+.|-+.|..|.|+++...+.+..+.+-+ ....-.|..-|...|-+|.|+.
T Consensus 50 Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 50 QPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred CcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 344444444444443211 2223334444444444444444444444432111000 1122233334444444444444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006636 235 VMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNG----RTCGIIISGYCKEGKIKEALRFARTMK 310 (637)
Q Consensus 235 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~ 310 (637)
+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+.++.. ..|..|...+....+++.|..++.+..
T Consensus 129 ~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 129 IFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 444444322 112233334444455555555555544444443322211 112222333333344444444444444
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006636 311 EYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGK 381 (637)
Q Consensus 311 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 381 (637)
+.+ +..+..--.+.......|++..|.+.++.+.+.++..-..+...|..+|.+.|+.++....+..+.+
T Consensus 208 qa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 208 QAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred hhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 332 1122222233344444455555555555544444333334444455555555555555555554444
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=6.3e-12 Score=125.17 Aligned_cols=284 Identities=10% Similarity=0.020 Sum_probs=219.1
Q ss_pred ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHH
Q 006636 192 KPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGM--KPDVVTYNTIATAYAQNGEADQAEE 269 (637)
Q Consensus 192 ~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~ 269 (637)
+..+|+.+|..++.. +..+......+..+|...+++++|.++|+.+.+... .-+..+|.+.+--+-+ +-++.
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 567899999987664 344456777888999999999999999999987521 1245667666543322 22222
Q ss_pred HHH-HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCC
Q 006636 270 VIV-EMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR 348 (637)
Q Consensus 270 ~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 348 (637)
.+. .+... -+..+.+|.++..+|.-+++.+.|++.|++.++.+ +....+|+.+..-+.....+|.|...|+..+...
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 222 22222 13457899999999999999999999999998764 3356778888777888888999999998887643
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006636 349 VNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTT 428 (637)
Q Consensus 349 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 428 (637)
+ .+-..|-.+...|.+.++++.|+-.|+++.+-+ +.+.+....+...+.+.|+.++|+.+++++...+ +.|+..--.
T Consensus 486 ~-rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~ 562 (638)
T KOG1126|consen 486 P-RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYH 562 (638)
T ss_pred c-hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHH
Confidence 2 244556667888999999999999999998875 4467778888889999999999999999998875 667776667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006636 429 IISGWCSDGSMDRAIEVFDKMCEHGVSPNLK-TFETLMWGYSEARQPWRAEEILQIMKAFG 488 (637)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 488 (637)
.+..+...+++++|+..++++.+. .|+.. .|..++..|.+.|+.+.|+.-|.-|.+..
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 777888899999999999999984 56554 78888999999999999999888887633
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=1.2e-10 Score=106.01 Aligned_cols=286 Identities=14% Similarity=0.144 Sum_probs=184.0
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCh
Q 006636 120 QKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTT------STYNTLIKGYGIAGKP 193 (637)
Q Consensus 120 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~~ 193 (637)
.++.++|.++|-+|.+.. +.+..+.-+|.+.|-+.|.++.|+++...+.++ ||. .+..-|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 346677777777777643 445556666777777777777777777777664 331 2334455667777777
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHH
Q 006636 194 EESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDV----VTYNTIATAYAQNGEADQAEE 269 (637)
Q Consensus 194 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~ 269 (637)
|.|..+|..+.+.+. --....--|+..|-...+|++|+++-+++.+.+-.+.. ..|.-|...+....+++.|..
T Consensus 124 DRAE~~f~~L~de~e--fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 124 DRAEDIFNQLVDEGE--FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hHHHHHHHHHhcchh--hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 777777777766542 23455666777777777888887777777766543332 344556666666777888888
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCC
Q 006636 270 VIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRV 349 (637)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 349 (637)
++.+..+.+. ..+..--.+.+.+...|+++.|++.++.+.+.+..--..+...+..+|.+.|+.++....+..+.+...
T Consensus 202 ~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 202 LLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 8887776543 234445556677788888888888888887764333445677777888888888888888877766543
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHH
Q 006636 350 NPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYV---REQEPEKAEELLMTMIE 416 (637)
Q Consensus 350 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~ 416 (637)
.++.. ..+...-....-.+.|...+.+-++. .|+...+..|++.-. ..|...+.+.+++.|+.
T Consensus 281 g~~~~--l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 281 GADAE--LMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred CccHH--HHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 33332 33333333444455566555554444 578888888887654 23445666666666654
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=2.8e-10 Score=106.88 Aligned_cols=285 Identities=13% Similarity=0.115 Sum_probs=175.7
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006636 190 AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEE 269 (637)
Q Consensus 190 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 269 (637)
.|++.+|.++..+-.+.+ +.....|..-+.+.-..|+.+.+-.++.+.-+.--.++....-+........|+...|..
T Consensus 97 eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 577777777777665544 223444555556666677777777777777665334455556666677777777777777
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHhhHHHHHH
Q 006636 270 VIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNL-------VIFNLLIKGFVEIMDRDGVDEVLA 342 (637)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~ 342 (637)
-.+++.+.+. .+..+......+|.+.|++.+...+...+.+.+.-.+. .+|..+++-....+..++....++
T Consensus 175 ~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 7777766654 35566677777777777777777777777776654443 244545544444444444444555
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 006636 343 LMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPN 422 (637)
Q Consensus 343 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 422 (637)
...+. .+.++..-.+++.-+.++|+.++|.++..+..+.+..|. .. ..-.+.+-++.+.-++..++-.+.. +.+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~h-~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQH-PED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHHHHHHHhC-CCC
Confidence 54332 233455555666666777777777777777666654443 11 1122345566666666665555442 445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006636 423 VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
+..+.+|+..|.+++.+.+|...|+...+ ..|+..+|..+..++.+.|++.+|.+.+++..
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 56666777777777777777777776655 34667777777777777777777777666654
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.50 E-value=3.2e-10 Score=106.53 Aligned_cols=286 Identities=14% Similarity=0.158 Sum_probs=232.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 006636 225 NEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALR 304 (637)
Q Consensus 225 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 304 (637)
..|++..|+++..+..+.+-. ....|..-+.+.-+.|+.+.+-.++.+..+....++..+.-+........|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 479999999999998877633 4455666677888899999999999999886445677778888899999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHH-------HHHHHHHHHHHcCChhHHHHHHH
Q 006636 305 FARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVI-------TYSTIMNAWSTAGFMDKCKEIFD 377 (637)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~ 377 (637)
-+.++.+.+ +.+.........+|.+.|++.....++..+.+.+.-.+.. +|..++.-....+..+.-...++
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999998876 6678889999999999999999999999999988765543 46666665555555555556676
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006636 378 DMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPN 457 (637)
Q Consensus 378 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 457 (637)
..... .+.++..-.+++.-+.++|+.++|.++..+..+.+..|+. ...-.+.+-++...-++..++-.+.- +-+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH-PED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC-CCC
Confidence 66543 3456777888899999999999999999999988766652 22334667788888888887776542 235
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006636 458 LKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
+..+.+|...|.+.+.|.+|.+.|+...+ ..|+..+|.-+.+++.+.|+..+|.+..++..
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 57889999999999999999999998777 77999999999999999999999999988765
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=7.3e-10 Score=108.40 Aligned_cols=289 Identities=10% Similarity=0.014 Sum_probs=215.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006636 245 KPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLL 324 (637)
Q Consensus 245 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 324 (637)
.-+......-..-+...+++.+..++++.+.+..+ +....+..-|.++...|+..+-..+-.++.+.- |....+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhH
Confidence 34556666667777888999999999998887643 566666666778888888877777777776653 5567789888
Q ss_pred HHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006636 325 IKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEP 404 (637)
Q Consensus 325 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 404 (637)
.--|...|...+|.+.|......+. .-...|-.....|+-.|..++|...+...-+.- +-..--+--+.--|.+.+++
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccH
Confidence 8888888999999999988766542 234678888888999999999998888776531 11111122234457788899
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC---C-CHHHHHHHHHHHHhcCChhHHH
Q 006636 405 EKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH--GVS---P-NLKTFETLMWGYSEARQPWRAE 478 (637)
Q Consensus 405 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~---p-~~~~~~~l~~~~~~~g~~~~A~ 478 (637)
+.|.+.|.+..... |.|+...+-+.......+.+.+|..+|+..+.. .+. + -..+++.|+.+|.+.++.++|+
T Consensus 397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999999988764 678888888888888888999999999887731 111 1 2346888888999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccccccccchHHHHHHHHhh
Q 006636 479 EILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERTNEMEAEEDIPVESLERLYHK 545 (637)
Q Consensus 479 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~a~~~~e~~~~~ 545 (637)
..+++..... .-+..++..++-.+...|+++.|...+++..-..|. ...+.+.+..+++.
T Consensus 476 ~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~------n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 476 DYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD------NIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHh
Confidence 9999887632 225678888998999999999999999998877653 23556666666664
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=3.1e-10 Score=108.87 Aligned_cols=390 Identities=11% Similarity=0.054 Sum_probs=224.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006636 111 TTLLAALTIQKRFNSIHSIMSQVEENGMDPD-SIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI 189 (637)
Q Consensus 111 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 189 (637)
-....-|.++|.+++|++.|.+.+.. .|| +..|.....+|...|++++..+--.+..+.++. -+..+..-.+++-+
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHEQ 195 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHHh
Confidence 33455677899999999999999985 577 888999999999999999998888888776432 34566677778888
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CC--CCCCHHHHHHHHHHHHHcCCHHH
Q 006636 190 AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAA-SG--MKPDVVTYNTIATAYAQNGEADQ 266 (637)
Q Consensus 190 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~g--~~~~~~~~~~li~~~~~~g~~~~ 266 (637)
.|++++|+.-..-..-.+++. |.. ...++.-..+. .|....++-.+ .+ +-|+.....+....+...-.
T Consensus 196 lg~~~eal~D~tv~ci~~~F~-n~s-~~~~~eR~Lkk----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~--- 266 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQ-NAS-IEPMAERVLKK----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK--- 266 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcc-cch-hHHHHHHHHHH----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc---
Confidence 888888764332222111111 111 11111111111 11122222222 11 22333333333322211000
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHC---CCC---CCH------HHHHHHHHHHHHcCC
Q 006636 267 AEEVIVEMEHNGVQPNGRTCGIIISGYCKE-GKIKEALRFARTMKEY---GVH---PNL------VIFNLLIKGFVEIMD 333 (637)
Q Consensus 267 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~---~~~---~~~------~~~~~ll~~~~~~~~ 333 (637)
..+...+...|...-..+=..+... ..+..|...+.+-... ... .|. .+.......+.-.|+
T Consensus 267 -----~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~ 341 (606)
T KOG0547|consen 267 -----PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGD 341 (606)
T ss_pred -----ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCC
Confidence 0000000000111101110111110 1122333222221100 000 111 111111222334577
Q ss_pred HhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006636 334 RDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMT 413 (637)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 413 (637)
..++.+-|+..+.....++. .|--+..+|....+.++..+.|....+.+ +.++.+|..-.+++.-.+++++|..-|++
T Consensus 342 ~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 342 SLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred chhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888877644333 26667777888888899999999888775 44777888888888888899999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-
Q 006636 414 MIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ- 492 (637)
Q Consensus 414 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~- 492 (637)
.+... +.+...|-.+..+..+.+.++++...|++.++. ++--+..|+.....+...++++.|.+.|+...+ ++|+
T Consensus 420 ai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--LE~~~ 495 (606)
T KOG0547|consen 420 AISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--LEPRE 495 (606)
T ss_pred HhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--hcccc
Confidence 88774 556677777777777888999999999988875 434567888888889999999999999988765 4444
Q ss_pred ------HHHHH--HHHHHHHHcCCHHHHHHHHHHHhhhhc
Q 006636 493 ------KSTFL--LLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 493 ------~~~~~--~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
...+. .++ .+.-.+++.+|+++++++.+..|
T Consensus 496 ~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dp 534 (606)
T KOG0547|consen 496 HLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDP 534 (606)
T ss_pred ccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCc
Confidence 11111 111 11222666666666666655544
No 54
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=1.8e-09 Score=99.36 Aligned_cols=118 Identities=10% Similarity=0.101 Sum_probs=51.0
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChhH
Q 006636 398 YVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETL-MWGYSEARQPWR 476 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~g~~~~ 476 (637)
+.-..++++.+..++.+..--...|.. --.+..+++..|++.+|.++|-.+....++ |..+|.++ .++|.+.++++-
T Consensus 369 fFL~~qFddVl~YlnSi~sYF~NdD~F-n~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESYFTNDDDF-NLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchh-hhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchH
Confidence 333444555555555554432122222 223445555555555555555544433333 33344332 334455555555
Q ss_pred HHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006636 477 AEEILQIMKAFGVHPQKS-TFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 477 A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
|++++-++. -..+.. ....+.+.|...+.+=-|-+.|+.+.
T Consensus 447 AW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 447 AWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred HHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 554433221 111111 12233444555555544444444443
No 55
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.40 E-value=4e-08 Score=98.03 Aligned_cols=422 Identities=14% Similarity=0.109 Sum_probs=242.1
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006636 84 ERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMD 163 (637)
Q Consensus 84 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 163 (637)
..|+.++|......-...+ ..+.+.|..+.-.+...+++++|+..|..+++.+ +.|..++.-|.-.-++.++++....
T Consensus 53 ~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred cccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 4466667766666655532 3466667766666666667777777777777665 5556666666555566666666665
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHH------HHHHhcCCHHHHHHHHH
Q 006636 164 TFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLV------RAWCNEKNITEAWNVMH 237 (637)
Q Consensus 164 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li------~~~~~~g~~~~A~~~~~ 237 (637)
.-....+..+. ....|..++.++.-.|+...|..+++...+.....|+...+.-.. ....+.|.+++|.+.+.
T Consensus 131 tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 131 TRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 55555554322 455677777777777777777777777665543335544443222 23345666666666665
Q ss_pred HHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH-HHHhcCCHHHHH-HHHHHHHHCCC
Q 006636 238 KMAASGMKPDVV-TYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIIS-GYCKEGKIKEAL-RFARTMKEYGV 314 (637)
Q Consensus 238 ~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~-~~~~~~~~~~~ 314 (637)
.-... ..|.. .-..-...+.+.+++++|..++..++..+ ||...|...+. ++.+-.+.-+++ .+|....+.
T Consensus 210 ~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-- 283 (700)
T KOG1156|consen 210 DNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-- 283 (700)
T ss_pred hhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--
Confidence 54322 11222 22344556667777777777777776653 45444444333 332333333343 444444332
Q ss_pred CCCHHHH-HHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH----CC------
Q 006636 315 HPNLVIF-NLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGK----AG------ 383 (637)
Q Consensus 315 ~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~------ 383 (637)
.|....- ..=++......-.+.....+..+.+.|+++ ++..+.+.|-.-...+-..++...+.. .|
T Consensus 284 y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D 360 (700)
T KOG1156|consen 284 YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLD 360 (700)
T ss_pred CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccc
Confidence 1111100 000111111111233444555566666543 334444444322222212222222211 11
Q ss_pred ----CCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006636 384 ----IKPDAHAYS--ILAKGYVREQEPEKAEELLMTMIESGFHPNV-VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSP 456 (637)
Q Consensus 384 ----~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 456 (637)
-+|....|+ -++..|-+.|+++.|..+++..+.. .|+. ..|..=...+...|++++|...+++..+.+. |
T Consensus 361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-a 437 (700)
T KOG1156|consen 361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-A 437 (700)
T ss_pred ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-h
Confidence 145555554 4567788999999999999999876 5554 4555666789999999999999999998753 4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHH----HHHH--HHHHHHHcCCHHHHHHHHHHHh
Q 006636 457 NLKTFETLMWGYSEARQPWRAEEILQIMKAFGVH--PQKS----TFLL--LAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 457 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~----~~~~--l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
|...=..-..-..++.+.++|.++.....+.|.. -+.. .|-. =+.+|.|.|++.+|.+-+..+.
T Consensus 438 DR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 438 DRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred hHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 6554445566667889999999999888766641 1111 1221 2467899999999998888875
No 56
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.39 E-value=4.8e-08 Score=97.47 Aligned_cols=431 Identities=12% Similarity=0.093 Sum_probs=287.4
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006636 73 RSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAF 152 (637)
Q Consensus 73 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 152 (637)
..+-.++..| ..+++...+++.+.++.. .+-...+.....-.+...|+.++|....+..++.+ ..+.+.|..+.-.+
T Consensus 9 ~lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 9 ALFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHH
Confidence 3444445544 567889999999988873 34455555555555667899999999888877755 45667888888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006636 153 SESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEA 232 (637)
Q Consensus 153 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A 232 (637)
-...++++|++.|......+.. |...|.-+.-.-++.++++.....-....+.. +.....|..++.++.-.|+...|
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--PSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999987644 67788888877888899998888877777653 44567899999999999999999
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHH------HHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 006636 233 WNVMHKMAASG-MKPDVVTYNTIA------TAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRF 305 (637)
Q Consensus 233 ~~~~~~~~~~g-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 305 (637)
..+++...+.. -.|+...+.... ......|.++.|.+.+..-... +......-..-...+.+.+++++|..+
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~ 241 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKV 241 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence 99999998764 246665554333 3345678888888877655432 212233445567788999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHH-HcCCHhhHH-HHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 006636 306 ARTMKEYGVHPNLVIFNLLIKGFV-EIMDRDGVD-EVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAG 383 (637)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 383 (637)
+..++.. .||..-|...+..+. +..+.-++. .+|....+.-+..... ...-++......-.+....++....+.|
T Consensus 242 y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p-~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 242 YRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECP-RRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccc-hhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 9999877 466665555544433 333333444 5565554432111111 1111111112223344455666677777
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CC----------CCCCHHHHHH--HHHHHHhcCCHHHHHHHHH
Q 006636 384 IKPDAHAYSILAKGYVREQEPEKAEELLMTMIE----SG----------FHPNVVIFTT--IISGWCSDGSMDRAIEVFD 447 (637)
Q Consensus 384 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----------~~~~~~~~~~--li~~~~~~g~~~~A~~~~~ 447 (637)
+++ ++..+...|-.-...+-..++.-.+.. .| -+|....|+. ++..+-..|+++.|+.+.+
T Consensus 319 ~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 319 VPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred CCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 654 444444444322211111111111111 10 1567776664 5667889999999999999
Q ss_pred HHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006636 448 KMCEHGVSPNLK-TFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 448 ~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
.++.+ .|+.+ .|..-.+.+.|.|..++|...+++..+.. .||...-..-+.-..++.+.++|.++..+-
T Consensus 396 ~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 396 LAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKF 465 (700)
T ss_pred HHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHh
Confidence 99885 57765 67777889999999999999999987643 235444445566677888888888877665
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3.3e-09 Score=103.91 Aligned_cols=282 Identities=10% Similarity=0.039 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006636 177 TSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIAT 256 (637)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 256 (637)
......-..-+...+++.+..++++.+.+.. |+....+..-|.++...|+..+-..+=.++.+. .+....+|-++.-
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 3333344444444555555555555555443 334444444444444555544444444444433 1223444554544
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhh
Q 006636 257 AYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDG 336 (637)
Q Consensus 257 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 336 (637)
.|...|..++|.+.|.+....+. .-...|-.....|+-.|..++|...+...-+.- +-...
T Consensus 321 YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hl----------------- 381 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHL----------------- 381 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcc-----------------
Confidence 44444555555555544432211 012334444444444444444444444333210 00000
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006636 337 VDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
+. --+..-|.+.+.++.|.+.|.+..... +.|+.+.+-+.-.....+.+.+|..+|+....
T Consensus 382 ----------------P~--LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~ 442 (611)
T KOG1173|consen 382 ----------------PS--LYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALE 442 (611)
T ss_pred ----------------hH--HHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHH
Confidence 11 112223444555555555555544432 33445555554444445555555555554431
Q ss_pred C--CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 006636 417 S--GF----HPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVH 490 (637)
Q Consensus 417 ~--~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 490 (637)
. .+ ..-..+++.|+.+|.+.+.+++|+..|++.+.... -|..++.++.-.+...|+++.|++.|.+... +.
T Consensus 443 ~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~ 519 (611)
T KOG1173|consen 443 VIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKALA--LK 519 (611)
T ss_pred HhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cC
Confidence 0 00 01223445555555555555555555555554422 2455555555555555555555555555433 55
Q ss_pred CCHHHHHHHHHH
Q 006636 491 PQKSTFLLLAEA 502 (637)
Q Consensus 491 p~~~~~~~l~~~ 502 (637)
|+..+...++..
T Consensus 520 p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 520 PDNIFISELLKL 531 (611)
T ss_pred CccHHHHHHHHH
Confidence 555444444433
No 58
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.38 E-value=9.5e-08 Score=95.13 Aligned_cols=163 Identities=9% Similarity=0.023 Sum_probs=99.1
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006636 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEG-GHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 150 (637)
+..|-.-...+.++|+...-+..|+..+.. .+......|...+......+-++.+..+|++.++. ++..-+-.|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 345666677778889999999999887763 11123346788888888888888899999988864 3334666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChH---HHHHHHHHHHhcCCCCCC--HHHHHHH
Q 006636 151 AFSESGNMEEAMDTFWKMKESG------LTPTTSTYNTLIKGYGIAGKPE---ESVKLLDLMSREGNVKPN--LRTYNVL 219 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~--~~~~~~l 219 (637)
.+++.+++++|.+.+....... .+.+-..|.-+-...+++-+.- ....++..+... -+| ...|++|
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r---ftDq~g~Lw~SL 254 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR---FTDQLGFLWCSL 254 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc---CcHHHHHHHHHH
Confidence 7888888888888877664321 1113334444444444332211 122233333222 123 2456666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 006636 220 VRAWCNEKNITEAWNVMHKMAA 241 (637)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~ 241 (637)
..-|.+.|.++.|..+|++...
T Consensus 255 AdYYIr~g~~ekarDvyeeai~ 276 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQ 276 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHH
Confidence 6666666666666666666554
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.38 E-value=6.5e-10 Score=117.88 Aligned_cols=269 Identities=11% Similarity=-0.018 Sum_probs=181.4
Q ss_pred CCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 006636 104 KPSLVTYTTLLAALTI-----QKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE---------SGNMEEAMDTFWKMK 169 (637)
Q Consensus 104 ~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---------~g~~~~A~~~~~~m~ 169 (637)
..+...|...+++... .+++++|...|++.++.. |.+...|..+..+|.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4556666665555322 134578888898888764 4455566666555442 234788999999988
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006636 170 ESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVV 249 (637)
Q Consensus 170 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 249 (637)
+.++. +...+..+...+...|++++|...|++..+.. |.+...+..+...+...|++++|+..+++..+.... +..
T Consensus 332 ~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~ 407 (553)
T PRK12370 332 ELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAA 407 (553)
T ss_pred hcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chh
Confidence 87654 67788888888888999999999999988865 556778888888899999999999999998876422 222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006636 250 TYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFV 329 (637)
Q Consensus 250 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 329 (637)
.+..++..+...|++++|...++++.....+.+...+..+..++...|++++|...+.++.... +.+....+.+...|.
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYC 486 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHh
Confidence 3334455566688899999999888765433345557778888888999999999998876542 233445556666666
Q ss_pred HcCCHhhHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 006636 330 EIMDRDGVDEVLALMKEFR-VNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAG 383 (637)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 383 (637)
..| +.+...++.+.+.. ..+....+ +-..|.-.|+.+.+... +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 666 46666666554421 11221222 33344556777766666 7776643
No 60
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.38 E-value=2e-07 Score=92.93 Aligned_cols=266 Identities=12% Similarity=0.157 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------
Q 006636 250 TYNTIATAYAQNGEADQAEEVIVEMEHNGVQPN---GRTCGIIISGYCKEGKIKEALRFARTMKEYGVH----------- 315 (637)
Q Consensus 250 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----------- 315 (637)
.|..+...|-..|+++.|..+|++..+...+-- ..+|..-..+=.+..+++.|+++.++.....-.
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 344555555555555555555555544322110 122333333333444455555554444321100
Q ss_pred ------CCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-H
Q 006636 316 ------PNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD-A 388 (637)
Q Consensus 316 ------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~ 388 (637)
.+...|...++.--..|-++....+++.++...+.....+.| ....+....-++++.+++++-+..-..|+ -
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 012233333333334444455555555554444322211111 11122333445555555554333221222 2
Q ss_pred HHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHH
Q 006636 389 HAYSILAKGYVR---EQEPEKAEELLMTMIESGFHPNVVIFTTII--SGWCSDGSMDRAIEVFDKMCEHGVSPNL--KTF 461 (637)
Q Consensus 389 ~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~ 461 (637)
..|+..+.-+.+ ...++.|..+|++..+ +.+|...-+--|+ ..--..|....|+.+++++... +++.. ..|
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~my 625 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMY 625 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHH
Confidence 344444443332 2345666666666665 3343322111111 1112346666666666665432 32222 245
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006636 462 ETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS---TFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 462 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
+..|.--...=-+.....+|++..+ .-|+.. ......+.=+..|.++.|..++.-..
T Consensus 626 ni~I~kaae~yGv~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~s 685 (835)
T KOG2047|consen 626 NIYIKKAAEIYGVPRTREIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGS 685 (835)
T ss_pred HHHHHHHHHHhCCcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence 5544433332223344555555544 234432 33345566677788888888876664
No 61
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.38 E-value=5.5e-10 Score=105.21 Aligned_cols=96 Identities=14% Similarity=0.167 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006636 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA 151 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 151 (637)
...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3344444444444555555555554444321 1233344444444444444444444444444432 2233334444444
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 006636 152 FSESGNMEEAMDTFWKMK 169 (637)
Q Consensus 152 ~~~~g~~~~A~~~~~~m~ 169 (637)
+...|++++|...|++..
T Consensus 109 ~~~~g~~~~A~~~~~~~~ 126 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAI 126 (234)
T ss_pred HHHcccHHHHHHHHHHHH
Confidence 444444444444444443
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.37 E-value=1.2e-09 Score=115.91 Aligned_cols=269 Identities=7% Similarity=-0.021 Sum_probs=195.9
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHHH
Q 006636 139 DPDSIFFNAVINAFSE-----SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI---------AGKPEESVKLLDLMS 204 (637)
Q Consensus 139 ~~~~~~~~~ll~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~ 204 (637)
+.+...|...+.+-.. .++.++|...|++..+..+. +...|..+..+|.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4555656555555322 23468999999999987543 55667666665542 244789999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChh
Q 006636 205 REGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGR 284 (637)
Q Consensus 205 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 284 (637)
+.. |.+...+..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++..+..+. +..
T Consensus 332 ~ld--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~ 407 (553)
T PRK12370 332 ELD--HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAA 407 (553)
T ss_pred hcC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chh
Confidence 875 5678899999999999999999999999999875 335677888999999999999999999999887543 233
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 006636 285 TCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWS 364 (637)
Q Consensus 285 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 364 (637)
.+..++..+...|++++|+..++++.....+.+...+..+..++...|+.++|...+..+.... +.+....+.+...|.
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYC 486 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHh
Confidence 3444555677789999999999998765423355567778888999999999999999876653 234455566666777
Q ss_pred HcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006636 365 TAGFMDKCKEIFDDMGKAG-IKPDAHAYSILAKGYVREQEPEKAEELLMTMIESG 418 (637)
Q Consensus 365 ~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 418 (637)
..| +.+...++.+.+.. ..+....+ +...|.-.|+.+.+..+ +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 777 47888777766531 11222222 44556677888877766 8887653
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.36 E-value=8.6e-10 Score=103.87 Aligned_cols=204 Identities=12% Similarity=0.094 Sum_probs=173.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006636 105 PSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLI 184 (637)
Q Consensus 105 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 184 (637)
.....+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|.+.+++..+..+. +...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence 346678888899999999999999999998765 556788889999999999999999999999887543 667888899
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006636 185 KGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEA 264 (637)
Q Consensus 185 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 264 (637)
..+...|++++|.+.|++.......+.....+..+...+...|++++|...+++..... +.+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence 99999999999999999998753233456678888999999999999999999998764 33567888899999999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006636 265 DQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 265 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
++|...+++.... .+.+...+..++..+...|+.++|..+.+.+...
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999998876 3345677778888999999999999998887653
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.36 E-value=2.5e-10 Score=103.80 Aligned_cols=233 Identities=15% Similarity=0.097 Sum_probs=197.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 006636 286 CGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWST 365 (637)
Q Consensus 286 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 365 (637)
-+.+..+|.+.|.+.+|.+.|+..... .|-+.||..+-.+|.+..++..|..++.+-.+.- +-|+.....+...+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHH
Confidence 367889999999999999999988776 6778889999999999999999999999987753 3455555677888899
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006636 366 AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEV 445 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 445 (637)
.++.++|.++++...+.. +.++.....+...|.-.++++.|+.+++++.+.| .-++..|+.+.-+|...++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHH
Confidence 999999999999998874 4577777778888999999999999999999998 56889999999999999999999999
Q ss_pred HHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006636 446 FDKMCEHGVSPNL--KTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 446 ~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
|++....--.|+. ..|-.+.......|++.-|.+.|+-.... .|+ .+.++.+.-+-.+.|++++|..+++.+...
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 9999875444554 47888888889999999999999987653 233 568888888889999999999999999877
Q ss_pred hcc
Q 006636 523 ERT 525 (637)
Q Consensus 523 ~~~ 525 (637)
.|+
T Consensus 459 ~P~ 461 (478)
T KOG1129|consen 459 MPD 461 (478)
T ss_pred Ccc
Confidence 664
No 65
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.32 E-value=5e-08 Score=99.30 Aligned_cols=407 Identities=14% Similarity=0.076 Sum_probs=225.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHH
Q 006636 104 KPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTT-STYNT 182 (637)
Q Consensus 104 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~ 182 (637)
.-|+..|..+.-++...|++..+-+.|++....- -.....|..+...|...|.-..|..+++.-......|+. ..+..
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 3456666666666666666666666666655432 223455666666666666666666666655443322322 22222
Q ss_pred HHHHHH-hcCChHHHHHHHHHHHhcCC---CCCCHHHHHHHHHHHHh-----------cCCHHHHHHHHHHHHHCCCCCC
Q 006636 183 LIKGYG-IAGKPEESVKLLDLMSREGN---VKPNLRTYNVLVRAWCN-----------EKNITEAWNVMHKMAASGMKPD 247 (637)
Q Consensus 183 li~~~~-~~g~~~~A~~~~~~m~~~~~---~~~~~~~~~~li~~~~~-----------~g~~~~A~~~~~~~~~~g~~~~ 247 (637)
.-..|. +.+..+++++.-.+.....+ -......+..+.-+|.. .....++++.+++..+.+.. |
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-d 477 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-D 477 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-C
Confidence 223332 23444444444444333100 01123334444333321 11234566666666554321 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006636 248 VVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKG 327 (637)
Q Consensus 248 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 327 (637)
+.....+.--|+..++++.|.+...+..+.+...+...|..+.-.+...+++.+|+.+.+.....- ..|......-+..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHI 556 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhh
Confidence 222222334455666666666666666665444566666666666666666666666666554321 1111111111111
Q ss_pred HHHcCCHhhHHHHHHHHhh----------------------------CCCCCCHHHHHHHHHHHH-HcCChhHHHHHHHH
Q 006636 328 FVEIMDRDGVDEVLALMKE----------------------------FRVNPDVITYSTIMNAWS-TAGFMDKCKEIFDD 378 (637)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~----------------------------~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~ 378 (637)
-...++.+++......+.. ..+.-...++..+..-.. +.........
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~---- 632 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK---- 632 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc----
Confidence 1112222222222111110 011111222222222211 1111110001
Q ss_pred HHHCCCC--CC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006636 379 MGKAGIK--PD------AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMC 450 (637)
Q Consensus 379 ~~~~~~~--~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (637)
+.+.... |+ ...|......+.+.+..++|...+.+..+.. +-....|...+..+...|...+|.+.|....
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 1211111 22 3456667778889999999999998887763 5566777878888899999999999999998
Q ss_pred HCCCCCCHH-HHHHHHHHHHhcCChhHHHH--HHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006636 451 EHGVSPNLK-TFETLMWGYSEARQPWRAEE--ILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 451 ~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~--~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
.. .|+.+ ...++...+...|+..-|.. ++..+.+ +.|+ .+.|-.++.++...|+.++|.+.|..+...
T Consensus 712 ~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 712 AL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 84 46654 89999999999998888877 8888887 4454 679999999999999999999999887554
No 66
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.31 E-value=8.8e-09 Score=105.91 Aligned_cols=425 Identities=13% Similarity=0.105 Sum_probs=223.8
Q ss_pred CcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006636 69 CRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAV 148 (637)
Q Consensus 69 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (637)
.|+=++|..+|..|+..|+.+.|- +|.-|.-.+.+.+...|+.++.+....++.+.+. .|...+|+.|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 344589999999999999999888 8888877666667788888888887777776654 5778889999
Q ss_pred HHHHHhcCCHHH---HHHHHHHHHH----CCCCCCHHHH---------------HHHHHHHHhcCChHHHHHHHHHHHhc
Q 006636 149 INAFSESGNMEE---AMDTFWKMKE----SGLTPTTSTY---------------NTLIKGYGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 149 l~~~~~~g~~~~---A~~~~~~m~~----~~~~~~~~~~---------------~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (637)
..+|...||+.. ..+.++.+.. .|+- ....| ...+....-.|-++.+++++..++..
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 999998888654 2222222211 1211 11111 11223333445555555555544433
Q ss_pred CCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhh
Q 006636 207 GNVKPNLRTYNVLVRAWCN-EKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRT 285 (637)
Q Consensus 207 ~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 285 (637)
....|..+ .++-+.. ...+++-..+.....+ .|++.+|..++..-...|+.+.|..++.+|.+.|++.+..-
T Consensus 169 a~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 169 AWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred cccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 21112111 1222221 1222332222222222 36666777777766677777777777777777776666555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhh------------------------HHHHH
Q 006636 286 CGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDG------------------------VDEVL 341 (637)
Q Consensus 286 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~------------------------a~~~~ 341 (637)
|-.|+-+ .++..-+..+++.|...|+.|+..|+...+..+..+|.... +.+.+
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l 318 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRL 318 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHH
Confidence 5555444 55666666666666666777766666555544444322111 10100
Q ss_pred H------------HHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHcCC---
Q 006636 342 A------------LMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGI---KPDAHAYSILAKGYVREQE--- 403 (637)
Q Consensus 342 ~------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~--- 403 (637)
+ ...-.|......+|...... ...|.-+...++-..+..-.. ..++..|..++.-|.+.-+
T Consensus 319 ~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~ 397 (1088)
T KOG4318|consen 319 RQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHI 397 (1088)
T ss_pred HHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhH
Confidence 0 00001222222333322222 234555555555555432110 1123333333333322111
Q ss_pred ----------------HHHHHHHHHHHHHCCCCCCH----------------------------HHHHHHHHHHHhcCCH
Q 006636 404 ----------------PEKAEELLMTMIESGFHPNV----------------------------VIFTTIISGWCSDGSM 439 (637)
Q Consensus 404 ----------------~~~A~~~~~~~~~~~~~~~~----------------------------~~~~~li~~~~~~g~~ 439 (637)
.+..-++-+-+... .||. ..-+.++..++..-+.
T Consensus 398 ~~~i~~~~qgls~~l~se~tp~vsell~~l--rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~ 475 (1088)
T KOG4318|consen 398 CSRIYYAGQGLSLNLNSEDTPRVSELLENL--RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNK 475 (1088)
T ss_pred HHHHHHHHHHHHhhhchhhhHHHHHHHHHh--CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 00000000000000 1111 1223344445554445
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH--HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006636 440 DRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK--AFGVHPQKSTFLLLAEARRATGLTKEAKRILS 517 (637)
Q Consensus 440 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~--~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~ 517 (637)
.+++..-++.... .-| ..|..|+.-|.+..+.+.|..+.++.. +..+..|..-+..+.+++.+.+.+.++..+++
T Consensus 476 lK~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~ 552 (1088)
T KOG4318|consen 476 LKILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILY 552 (1088)
T ss_pred HHHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHh
Confidence 5554443333321 111 457788888888888888888887774 22344556668888888888888888888888
Q ss_pred HHhhh
Q 006636 518 KIKNK 522 (637)
Q Consensus 518 ~~~~~ 522 (637)
.+.+.
T Consensus 553 e~ks~ 557 (1088)
T KOG4318|consen 553 EDKSS 557 (1088)
T ss_pred hhhHH
Confidence 87653
No 67
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.30 E-value=5.7e-10 Score=114.36 Aligned_cols=90 Identities=20% Similarity=0.343 Sum_probs=50.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 006636 129 IMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGN 208 (637)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 208 (637)
.+..+...|+.|+.++|..+|.-|+..|+.+.|- +|.-|.-...+.....++.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 3444555566666666666666666666665555 5555555544445555666666555555554443
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH
Q 006636 209 VKPNLRTYNVLVRAWCNEKNITE 231 (637)
Q Consensus 209 ~~~~~~~~~~li~~~~~~g~~~~ 231 (637)
.|...+|..|..+|...|++..
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH
Confidence 2455556666666666665544
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=1.2e-09 Score=99.46 Aligned_cols=238 Identities=11% Similarity=0.068 Sum_probs=200.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006636 247 DVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIK 326 (637)
Q Consensus 247 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 326 (637)
|-.--+.+..+|.+.|.+.+|.+.++..++. .|-+.||..|...|.+-.+++.|+.++.+-.+.- +-|+.....+..
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHH
Confidence 3344467999999999999999999988776 4667888899999999999999999999988762 445545566778
Q ss_pred HHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006636 327 GFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEK 406 (637)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 406 (637)
.+...++.+++.++++...+.. +.++....++...|.-.++++.|+..+++++..|+. ++..|+.+.-.|.-.++++-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhh
Confidence 8888999999999999998865 357777888888899999999999999999999864 88999999999999999999
Q ss_pred HHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006636 407 AEELLMTMIESGFHPN--VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIM 484 (637)
Q Consensus 407 A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 484 (637)
++.-|.+.....-.|+ ..+|-.+.......|++..|.+.|+-.+..+.. +...++.|.-.-.+.|++++|..+++..
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 9999999876543344 457888998889999999999999998876532 5668999988889999999999999988
Q ss_pred HHCCCCCC
Q 006636 485 KAFGVHPQ 492 (637)
Q Consensus 485 ~~~g~~p~ 492 (637)
.. +.|+
T Consensus 456 ~s--~~P~ 461 (478)
T KOG1129|consen 456 KS--VMPD 461 (478)
T ss_pred hh--hCcc
Confidence 76 5555
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=4.5e-07 Score=85.75 Aligned_cols=305 Identities=10% Similarity=0.013 Sum_probs=215.2
Q ss_pred CCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-hhhH
Q 006636 211 PNLRTYNVLVRAWC--NEKNITEAWNVMHKMAAS-GMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPN-GRTC 286 (637)
Q Consensus 211 ~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~ 286 (637)
|...+...-+.+++ -.++-..|...+-.+... -++-|+.....+..++...|+.++|+..|++....+ |+ ....
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~M 269 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAM 269 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhH
Confidence 33333333344433 334444444444444332 245577888889999999999999999999886542 32 2222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 006636 287 GIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTA 366 (637)
Q Consensus 287 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 366 (637)
....-.+.+.|+.+....+...+.... .-....|-.-+...-..+++..|..+-+..++... .+...+-.-...+...
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhc
Confidence 223344567788888777777775432 12233344344444556777788877777776542 3455555556677889
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHh-cCCHHHHHH
Q 006636 367 GFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTII-SGWCS-DGSMDRAIE 444 (637)
Q Consensus 367 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-~~~~~-~g~~~~A~~ 444 (637)
+++++|.-.|+...... +-+..+|.-|+..|...|++.+|.-+-+...+. ++.+..+.+.+. ..|.- ..--++|.+
T Consensus 348 ~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred cchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHH
Confidence 99999999999988763 457899999999999999999998888876664 355667766664 33332 223577888
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh
Q 006636 445 VFDKMCEHGVSPNLK-TFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 445 ~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 523 (637)
++++... +.|+.. ..+.+...|...|+.++++.++++... ..||......+++.+...+.+.+|...+..+....
T Consensus 426 f~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 426 FAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 8888876 457765 677788899999999999999999876 77899999999999999999999999999998877
Q ss_pred cc
Q 006636 524 RT 525 (637)
Q Consensus 524 ~~ 525 (637)
|.
T Consensus 502 P~ 503 (564)
T KOG1174|consen 502 PK 503 (564)
T ss_pred cc
Confidence 64
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=4e-07 Score=86.10 Aligned_cols=310 Identities=11% Similarity=0.096 Sum_probs=228.6
Q ss_pred CCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H
Q 006636 173 LTPTTSTYNTLIKGYGI--AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDV-V 249 (637)
Q Consensus 173 ~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~ 249 (637)
.+|........+.++++ .++...|...+-.+.....++.|+.....+...+...|+.++|+..|++.... .|+. .
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~ 267 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVE 267 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhhh
Confidence 33343334444555443 45666666666655555557788999999999999999999999999998764 3332 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006636 250 TYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFV 329 (637)
Q Consensus 250 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 329 (637)
....-.-.+.+.|+.+.-..+...+.... +-....|-.-+......++++.|+.+-.+.++.. +.+...+-.-...+.
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~ 345 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLI 345 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHH
Confidence 22233344567888888888777775432 1233344444556667889999999999988764 445556666667788
Q ss_pred HcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHc-CCHHHH
Q 006636 330 EIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILA-KGYVRE-QEPEKA 407 (637)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~-g~~~~A 407 (637)
+.++.++|.-.|+..+... +.+..+|..|+..|...|++.+|..+-+...+. ++.+..+.+.+. ..+.-. .--++|
T Consensus 346 ~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKA 423 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKA 423 (564)
T ss_pred hccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHH
Confidence 8999999999999988764 357899999999999999999999888876664 345667776663 344332 234789
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006636 408 EELLMTMIESGFHPN-VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 408 ~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
.+++++..+. .|+ ....+.+...|...|..++++.++++... ..||....+.|...+...+.+++|.+.|.....
T Consensus 424 Kkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 424 KKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9999988775 455 45667778889999999999999999887 468999999999999999999999999998876
Q ss_pred CCCCCCHH
Q 006636 487 FGVHPQKS 494 (637)
Q Consensus 487 ~g~~p~~~ 494 (637)
+.|...
T Consensus 500 --~dP~~~ 505 (564)
T KOG1174|consen 500 --QDPKSK 505 (564)
T ss_pred --cCccch
Confidence 666654
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.24 E-value=1.1e-08 Score=103.30 Aligned_cols=99 Identities=26% Similarity=0.332 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH----HCCC-CC
Q 006636 424 VIFTTIISGWCSDGSMDRAIEVFDKMCEH-----G-VSPN-LKTFETLMWGYSEARQPWRAEEILQIMK----AFGV-HP 491 (637)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~g~-~p 491 (637)
.+++.|...|...|++++|.++|++++.. | ..+. ...++.|...|.+.++..+|.++|.+.. ..|. .|
T Consensus 368 ~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~ 447 (508)
T KOG1840|consen 368 KIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHP 447 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCC
Confidence 35566666666666666666666665431 1 1111 2356666777777777777777766542 2232 23
Q ss_pred CH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006636 492 QK-STFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 492 ~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
+. .+|..|..+|.+.|++++|+++.+.+...
T Consensus 448 ~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 448 DVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 33 36778888888888888888888777643
No 72
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=7.5e-07 Score=88.22 Aligned_cols=418 Identities=12% Similarity=0.083 Sum_probs=224.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcC
Q 006636 79 MNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFS--ESG 156 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~g 156 (637)
++.+.++|++++|.+...+++..+ +.+...+..-+-++.+.+.++.|+.+.+.-.... .-+... +=.+|+ +.+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~---fEKAYc~Yrln 93 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFF---FEKAYCEYRLN 93 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhh---HHHHHHHHHcc
Confidence 577788999999999999999854 5577888888889999999999996655322100 111111 234554 678
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006636 157 NMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVM 236 (637)
Q Consensus 157 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 236 (637)
..++|+..++.... .+..+...-...+.+.|++++|+++|..+.+.+.-.-+...-..++.+-... .+- +.
T Consensus 94 k~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~~-~~ 164 (652)
T KOG2376|consen 94 KLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QVQ-LL 164 (652)
T ss_pred cHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hHH-HH
Confidence 99999999883322 2444666677788899999999999999977652111222222222221110 111 12
Q ss_pred HHHHHCCCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHhCC-------CCCCh-------hhHHHHHHHHHhcCCH
Q 006636 237 HKMAASGMKPDVVTYN---TIATAYAQNGEADQAEEVIVEMEHNG-------VQPNG-------RTCGIIISGYCKEGKI 299 (637)
Q Consensus 237 ~~~~~~g~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~-------~~~~~li~~~~~~g~~ 299 (637)
+... ..| ..+|. .....+...|++.+|+++++...+.+ -..+. ..-..|.-.+-..|+.
T Consensus 165 q~v~---~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 165 QSVP---EVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred Hhcc---CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 2221 222 22332 24445677899999999888773211 00001 1112344456678999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHHcCCHhh--------------HHHHHHHH-----------------
Q 006636 300 KEALRFARTMKEYGVHPNLVIF----NLLIKGFVEIMDRDG--------------VDEVLALM----------------- 344 (637)
Q Consensus 300 ~~A~~~~~~~~~~~~~~~~~~~----~~ll~~~~~~~~~~~--------------a~~~~~~~----------------- 344 (637)
++|..++...++.. ++|.... |.++.. ....++-+ +......+
T Consensus 241 ~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 241 AEASSIYVDIIKRN-PADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred HHHHHHHHHHHHhc-CCCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888765 3443222 222211 11000000 00000000
Q ss_pred ------------hhCCCCCCHHHHHHHHHHHHH--cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006636 345 ------------KEFRVNPDVITYSTIMNAWST--AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEEL 410 (637)
Q Consensus 345 ------------~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 410 (637)
...........+..++..+.+ ......+..++...-+....-...+.-.++......|+++.|.++
T Consensus 319 ~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 319 FTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred HhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 000001112222333332221 113445555555554432222244555556666677777777777
Q ss_pred HH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHH----HHHHHHHHHhcCChhH
Q 006636 411 LM--------TMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH--GVSPNLKT----FETLMWGYSEARQPWR 476 (637)
Q Consensus 411 ~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~----~~~l~~~~~~~g~~~~ 476 (637)
+. .+.+.+..| .+...+...+.+.++.+.|..++.+.... .-.+.... +.-+...=.+.|.-++
T Consensus 399 l~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 399 LSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 77 444433333 33444555566666666666666665431 01112222 2222333344677777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006636 477 AEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 477 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
|..+++++.+.. .+|.....+++.+|++. +.+.|+.+-.+++
T Consensus 477 a~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 477 ASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 777777776532 34566677777777665 5666666665553
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.23 E-value=7e-09 Score=104.83 Aligned_cols=238 Identities=20% Similarity=0.212 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CC-CCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-C
Q 006636 248 VVTYNTIATAYAQNGEADQAEEVIVEMEHN-----GV-QPNGR-TCGIIISGYCKEGKIKEALRFARTMKEY-----G-V 314 (637)
Q Consensus 248 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-~ 314 (637)
..+...|...|...|+++.|+.+++..++. |. .|... ..+.+...|...+++++|..+|+++... | .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 455666888999999999999999887653 21 12332 2344778899999999999999998643 2 1
Q ss_pred CC-CHHHHHHHHHHHHHcCCHhhHHHHHHHHhhC-----CC-CCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHC---C
Q 006636 315 HP-NLVIFNLLIKGFVEIMDRDGVDEVLALMKEF-----RV-NPDV-ITYSTIMNAWSTAGFMDKCKEIFDDMGKA---G 383 (637)
Q Consensus 315 ~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~ 383 (637)
.| -..+++.|..+|.+.|++++|...++...+. +. .+.+ ..++.+...|...+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 12 2346777888899999999999998876432 11 1122 23667778899999999999999986542 1
Q ss_pred CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-
Q 006636 384 IKPD----AHAYSILAKGYVREQEPEKAEELLMTMIES-----G--FHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE- 451 (637)
Q Consensus 384 ~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 451 (637)
+.++ ..+++.|...|.+.|++++|.+++++++.. + ..-.-..++.|...|.+.+++++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 467899999999999999999999998753 1 112245678889999999999999999988653
Q ss_pred ---CCC-CCCHH-HHHHHHHHHHhcCChhHHHHHHHHHH
Q 006636 452 ---HGV-SPNLK-TFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 452 ---~~~-~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
.|+ .|+.. +|..|..+|...|++++|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 332 23443 79999999999999999999988876
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.21 E-value=7.8e-08 Score=98.62 Aligned_cols=293 Identities=16% Similarity=0.116 Sum_probs=152.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHc
Q 006636 183 LIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYN-TIATAYAQN 261 (637)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~-~li~~~~~~ 261 (637)
....+...|++++|++.++.-... +.............+.+.|+.++|..++..+++.+ |+...|. .+..+....
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhh
Confidence 345556777777777777665443 33334455556667777777777777777777764 4444443 333333111
Q ss_pred -----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHh
Q 006636 262 -----GEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKI-KEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRD 335 (637)
Q Consensus 262 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 335 (637)
.+.+....+|+++...- |.......+.-.+.....+ ..+..++..+...|+|+
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs------------------- 144 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS------------------- 144 (517)
T ss_pred cccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch-------------------
Confidence 23455556666554432 2222222221112111122 22333344444444332
Q ss_pred hHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC--------------CCCCCHH--HHHHHHHHHH
Q 006636 336 GVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKA--------------GIKPDAH--AYSILAKGYV 399 (637)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------------~~~~~~~--~~~~l~~~~~ 399 (637)
+|+.|-..|......+-...++...... .-+|... ++.-+...|-
T Consensus 145 -------------------lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 145 -------------------LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred -------------------HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 2222222222222222222222222110 0123332 2344455666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006636 400 REQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEE 479 (637)
Q Consensus 400 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 479 (637)
..|++++|++++++.++.. |..+..|..-...+-+.|++.+|.+.++.+...+.. |...-+-.+..+.++|++++|.+
T Consensus 206 ~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~ 283 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEK 283 (517)
T ss_pred HhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHH
Confidence 7777777777777777653 333556666677777777777777777777765443 55555555666677777777777
Q ss_pred HHHHHHHCCCCCCHH------H--HHHHHHHHHHcCCHHHHHHHHHHHhh
Q 006636 480 ILQIMKAFGVHPQKS------T--FLLLAEARRATGLTKEAKRILSKIKN 521 (637)
Q Consensus 480 ~~~~m~~~g~~p~~~------~--~~~l~~~~~~~g~~~eA~~~~~~~~~ 521 (637)
.+....+.+..|... . ....+.+|.|.|++..|.+.+..+..
T Consensus 284 ~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 284 TASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 776665444333221 1 12445677777777777777776653
No 75
>PF13041 PPR_2: PPR repeat family
Probab=99.19 E-value=6.4e-11 Score=80.16 Aligned_cols=49 Identities=35% Similarity=0.813 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006636 421 PNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYS 469 (637)
Q Consensus 421 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 469 (637)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666777777777777777777777777776677777777777776664
No 76
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.17 E-value=1.4e-06 Score=89.15 Aligned_cols=401 Identities=14% Similarity=0.107 Sum_probs=228.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHH
Q 006636 137 GMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTY 216 (637)
Q Consensus 137 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 216 (637)
.+..|..+|..|.-+...+|+++.+.+.|++....-+. ....|+.+...|...|.-..|+.+++.-.....-++|...+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34567778888888888888888888888887654322 55678888888888888888888887765432123333333
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhCCCC
Q 006636 217 NVLVRAWC-NEKNITEAWNVMHKMAAS--GM--KPDVVTYNTIATAYAQN-----------GEADQAEEVIVEMEHNGVQ 280 (637)
Q Consensus 217 ~~li~~~~-~~g~~~~A~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~ 280 (637)
...-..|. +.+.+++++.+-.++... +. ...+..|..+.-+|... ....++++.+++..+.+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~- 475 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP- 475 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-
Confidence 33333343 456777777776666551 11 11234444444444322 123466677777766544
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHH
Q 006636 281 PNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIM 360 (637)
Q Consensus 281 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 360 (637)
.|..+.-.+.--|+..++++.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+...+.-. .|......-+
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~-~N~~l~~~~~ 554 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG-DNHVLMDGKI 554 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh-hhhhhchhhh
Confidence 233444445556777888888888888888775567788888888888888888888888776554311 1111111111
Q ss_pred HHHHHcCChhHHHHHHHHHHHC---------------------CC-------CCCHHHHHHHHHHHH---HcCCHHHHHH
Q 006636 361 NAWSTAGFMDKCKEIFDDMGKA---------------------GI-------KPDAHAYSILAKGYV---REQEPEKAEE 409 (637)
Q Consensus 361 ~~~~~~g~~~~a~~~~~~~~~~---------------------~~-------~~~~~~~~~l~~~~~---~~g~~~~A~~ 409 (637)
..-...++.+++......+... |. .....++..+..... +.-..+..
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~-- 632 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK-- 632 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc--
Confidence 1112234444443333332210 00 000111111111111 00000111
Q ss_pred HHHHHHHCCCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 006636 410 LLMTMIESGFH--PN------VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEIL 481 (637)
Q Consensus 410 ~~~~~~~~~~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 481 (637)
+...... |+ ...|......+...++.++|...+.++.... +-....|.-....+...|...||.+.|
T Consensus 633 ----Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 633 ----LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred ----cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 1111111 22 2245555666778888888888887776642 123445666666777788888898888
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHH--HHHHHhhhhccc-----------cccccccchHHHHHHHHhhhc
Q 006636 482 QIMKAFGVHPQKS-TFLLLAEARRATGLTKEAKR--ILSKIKNKERTN-----------EMEAEEDIPVESLERLYHKEA 547 (637)
Q Consensus 482 ~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~--~~~~~~~~~~~~-----------~~~~~~~~a~~~~e~~~~~~~ 547 (637)
..... +.|+.. ...+++.++.+.|+..-|.. ++..+....|.+ ...|+.+.|...+..++++++
T Consensus 708 ~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 708 LVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 77765 667644 77788888888887666665 666665554432 234555555555555555554
Q ss_pred cC
Q 006636 548 TT 549 (637)
Q Consensus 548 ~~ 549 (637)
.+
T Consensus 786 S~ 787 (799)
T KOG4162|consen 786 SN 787 (799)
T ss_pred CC
Confidence 43
No 77
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.17 E-value=1.5e-07 Score=96.52 Aligned_cols=130 Identities=14% Similarity=0.161 Sum_probs=90.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 006636 285 TCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWS 364 (637)
Q Consensus 285 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 364 (637)
++..+...|...|++++|++++++.+++. +-.+..|..-...+-+.|++.+|.+.++....... .|..+-+-.+..+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHH
Confidence 33555667777888888888888877763 22355777777778888888888888888777653 46666667777777
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHH------HH--HHHHHHHHHcCCHHHHHHHHHHHHH
Q 006636 365 TAGFMDKCKEIFDDMGKAGIKPDAH------AY--SILAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 365 ~~g~~~~a~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
+.|++++|.+++....+.+..|... .| .....+|.+.|++..|++-|..+.+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8888888888888776655333211 12 3446677888888888877776654
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.17 E-value=3.5e-08 Score=95.78 Aligned_cols=218 Identities=11% Similarity=0.001 Sum_probs=140.1
Q ss_pred CChhHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006636 86 GKPQEAQAIFNNLIEGGH-KP--SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAM 162 (637)
Q Consensus 86 g~~~~A~~~~~~~~~~~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 162 (637)
+..+.++..+.+++.... .| ....|..+...+...|+++.|...|.+.++.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 455667777777765321 11 23457777777888888888888888888765 566788888888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006636 163 DTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAAS 242 (637)
Q Consensus 163 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 242 (637)
..|++..+..+. +..+|..+...+...|++++|++.|+...+.. |+..........+...++.++|...|.+....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~---P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD---PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 888888876543 56677778888888888888888888887754 33222222222334567788888888665433
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006636 243 GMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHN---GV---QPNGRTCGIIISGYCKEGKIKEALRFARTMKEYG 313 (637)
Q Consensus 243 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 313 (637)
. .++...+ .+. ....|+...+ ..+..+.+. .+ +.....|..+...+.+.|++++|+..|++..+..
T Consensus 195 ~-~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 L-DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred C-CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2 2222222 222 2334555443 244443321 11 0123467777888888888888888888887664
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.16 E-value=5.6e-08 Score=84.93 Aligned_cols=123 Identities=11% Similarity=0.061 Sum_probs=45.7
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 006636 117 LTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEES 196 (637)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 196 (637)
|...|++..|...+++.++.. +.+..+|..+...|.+.|+.+.|.+.|++.....+. +..+.|.....+|..|++++|
T Consensus 45 YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCChHHH
Confidence 333334444444333333332 222333333333333444444444444433333221 223333333333344444444
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006636 197 VKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAA 241 (637)
Q Consensus 197 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 241 (637)
...|++.........-..+|..+.-+..+.|+.+.|...|++.++
T Consensus 123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence 444443333222222223333333333344444444444444333
No 80
>PF13041 PPR_2: PPR repeat family
Probab=99.14 E-value=1.4e-10 Score=78.55 Aligned_cols=49 Identities=33% Similarity=0.695 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006636 211 PNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYA 259 (637)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 259 (637)
||..+||+++++|++.|++++|.++|++|.+.|+.||..||+.|+++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555543
No 81
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=7.4e-07 Score=87.47 Aligned_cols=393 Identities=15% Similarity=0.130 Sum_probs=226.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 006636 79 MNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPD-SIFFNAVINAFSESGN 157 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~ 157 (637)
-++....|+++.|+.+|-+.+..+ ++|.+.|+.-..+|+..|+++.|+.--.+..+. .|+ ..-|+....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 456678899999999999998865 458899999999999999999998876666664 565 4678999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH------HHHHhcC--CCCCCHHHHHHHHHHHHhc---
Q 006636 158 MEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLL------DLMSREG--NVKPNLRTYNVLVRAWCNE--- 226 (637)
Q Consensus 158 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~------~~m~~~~--~~~~~~~~~~~li~~~~~~--- 226 (637)
+++|+..|.+-.+..+. +...++.+..++.... .+.+.| ..+.... ........|..++..+-+.
T Consensus 86 ~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~ 161 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTS 161 (539)
T ss_pred HHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHh
Confidence 99999999998887543 5667777887772110 011111 1110000 0000011222222222110
Q ss_pred -------CCHHHHHHHHHHH-----HHCC-------CCC------------C----------HHHHHHHHHHHHHcCCHH
Q 006636 227 -------KNITEAWNVMHKM-----AASG-------MKP------------D----------VVTYNTIATAYAQNGEAD 265 (637)
Q Consensus 227 -------g~~~~A~~~~~~~-----~~~g-------~~~------------~----------~~~~~~li~~~~~~g~~~ 265 (637)
.++..+...+... ...| ..| | ..-...+.+...+..+++
T Consensus 162 l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~ 241 (539)
T KOG0548|consen 162 LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFE 241 (539)
T ss_pred hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence 0011111111000 0000 011 0 011234555555566666
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHHcCCHhhHH
Q 006636 266 QAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNL-------LIKGFVEIMDRDGVD 338 (637)
Q Consensus 266 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------ll~~~~~~~~~~~a~ 338 (637)
.|++-+....... .+..-++....+|...|.+.+.........+.| .....-++. +..+|.+.++++.+.
T Consensus 242 ~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g-re~rad~klIak~~~r~g~a~~k~~~~~~ai 318 (539)
T KOG0548|consen 242 TAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVG-RELRADYKLIAKALARLGNAYTKREDYEGAI 318 (539)
T ss_pred HHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh-HHHHHHHHHHHHHHHHhhhhhhhHHhHHHHH
Confidence 6666666665543 344445555566666666666555555544433 111111221 223444555566666
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006636 339 EVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA-HAYSILAKGYVREQEPEKAEELLMTMIES 417 (637)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 417 (637)
..|.........|+.. .+....+++........-.+ |.. .-...-..-+.+.|++..|...|.++++.
T Consensus 319 ~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr 387 (539)
T KOG0548|consen 319 KYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR 387 (539)
T ss_pred HHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 6666544433222211 12223333333333322221 211 11122255567888999999999998887
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006636 418 GFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK-TFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTF 496 (637)
Q Consensus 418 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 496 (637)
. |.|...|.....+|.+.|.+..|++--+..++. .|+.. .|..=+.++....++++|.+.|++..+ ..|+..-+
T Consensus 388 ~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale--~dp~~~e~ 462 (539)
T KOG0548|consen 388 D-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE--LDPSNAEA 462 (539)
T ss_pred C-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchhHHH
Confidence 6 778888888888999999999998888888775 34433 566666677777788888888888776 44554433
Q ss_pred H
Q 006636 497 L 497 (637)
Q Consensus 497 ~ 497 (637)
.
T Consensus 463 ~ 463 (539)
T KOG0548|consen 463 I 463 (539)
T ss_pred H
Confidence 3
No 82
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.09 E-value=2.1e-07 Score=90.32 Aligned_cols=149 Identities=12% Similarity=-0.008 Sum_probs=91.0
Q ss_pred ChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 006636 122 RFNSIHSIMSQVEENG-MDPD--SIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVK 198 (637)
Q Consensus 122 ~~~~a~~~~~~~~~~~-~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 198 (637)
..+.++.-+.+++... ..|+ ...|..+...|...|+.++|...|++..+..+. +...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 4455555555555432 1111 344666666777777777777777777766543 56677777777777777777777
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006636 199 LLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEME 275 (637)
Q Consensus 199 ~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 275 (637)
.|++..+.. |.+..+|..+...+...|++++|++.|+...+.. |+..........+...+++++|...|.+..
T Consensus 120 ~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 120 AFDSVLELD--PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 777777643 3346667777777777777777777777776643 332211222222344566777777775544
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.09 E-value=1.3e-07 Score=82.64 Aligned_cols=200 Identities=14% Similarity=0.037 Sum_probs=160.1
Q ss_pred HHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006636 321 FNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVR 400 (637)
Q Consensus 321 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 400 (637)
...+.-.|.+.|+...|..-++..++.. +.+..++..+...|.+.|..+.|.+.|++..+.. +.+..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3445667888888888888888888876 3467788888889999999999999999988864 4467788888999999
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006636 401 EQEPEKAEELLMTMIESGF-HPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEE 479 (637)
Q Consensus 401 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 479 (637)
.|++++|...|++...... .--..+|..++.+..+.|+.+.|...|++.++.... ...+...+.......|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 9999999999999887522 223468888888889999999999999999886432 45577888888889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc
Q 006636 480 ILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 480 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
+++.....+. ++.+.....+..-.+.|+.+.|-++=.++....|
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 8888765444 8888888888888899998888887776655544
No 84
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=6.2e-07 Score=83.05 Aligned_cols=411 Identities=10% Similarity=0.036 Sum_probs=267.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006636 79 MNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNM 158 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 158 (637)
+.-+..+.++..|+.+++--...+-.-...+-.-+..++...|++++|...|..+.... .++...+..|.-.+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 67778889999999999877643322222222335567788999999999999887765 67778888888777788999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006636 159 EEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHK 238 (637)
Q Consensus 159 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 238 (637)
.+|..+-.+..+ ++-....|.+.-.+.|+-++-..+-..+.. +...-.+|.+.....-.+.+|++++.+
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD------~~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD------TLEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh------hHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 999988777643 455566667777788887777766666543 335556677777777789999999999
Q ss_pred HHHCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006636 239 MAASGMKPDVVTYN-TIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPN 317 (637)
Q Consensus 239 ~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 317 (637)
.+.. .|.-...| .+.-+|.+..-++-+.++++--++. ++.+....|..+....+.=+-..|.+-...+.+.+-..
T Consensus 177 vL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~- 252 (557)
T KOG3785|consen 177 VLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE- 252 (557)
T ss_pred HHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-
Confidence 9875 34444444 3555778888889898888877665 22334455554444444322233443344444332111
Q ss_pred HHHHHHHHHHHHHc-----CCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006636 318 LVIFNLLIKGFVEI-----MDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYS 392 (637)
Q Consensus 318 ~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 392 (637)
...+.-+++. ..-+.|.+++--+.+.- | .....|+-.|.+.+++++|..+.+.+.-. .|-.....
T Consensus 253 ----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~I--P--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilK 322 (557)
T KOG3785|consen 253 ----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHI--P--EARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILK 322 (557)
T ss_pred ----chhHHHHHHcCeEEEeCCccHHHhchHHHhhC--h--HhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHH
Confidence 1122222332 33467777776655432 2 23344566688999999999988776422 23222222
Q ss_pred HHHHHHHHcC-------CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006636 393 ILAKGYVREQ-------EPEKAEELLMTMIESGFHPNV-VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETL 464 (637)
Q Consensus 393 ~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 464 (637)
.++ .+..| .+.-|.+.|+-.-+++..-|. .--.++.+++.-..++++.+-++..+...-. -|...-..+
T Consensus 323 gvv--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~-NdD~Fn~N~ 399 (557)
T KOG3785|consen 323 GVV--FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFT-NDDDFNLNL 399 (557)
T ss_pred HHH--HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcchhhhHH
Confidence 222 23333 345566666655544433332 2345677777777789999999988876533 344444468
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHH
Q 006636 465 MWGYSEARQPWRAEEILQIMKAFGVHPQKSTFL-LLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
..+....|.+.+|.++|-......++ +..+|. .+...+.+.++.+-|..++-++
T Consensus 400 AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 400 AQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 88999999999999999776543344 344555 5667889999999999998776
No 85
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.08 E-value=2e-07 Score=97.28 Aligned_cols=476 Identities=10% Similarity=-0.035 Sum_probs=279.9
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006636 87 KPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFW 166 (637)
Q Consensus 87 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 166 (637)
+...|+..|-+..+..+ -=...|..|...|....+...|...|+++.+.+ +.|...+......|+...+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 36677777766665321 134578888888877778888888888888776 6677788888888888888888888744
Q ss_pred HHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006636 167 KMKESGLT-PTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMK 245 (637)
Q Consensus 167 ~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 245 (637)
...+.... .-...|.-..-.|...++...|+.-|+...+.. |.|...|..++.+|...|++..|+++|.+.... +
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d--PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD--PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC--chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 33332111 112234445556777888888888888887764 567788888888888888888888888887664 3
Q ss_pred CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCChhhHHHHHHHHHhcCCH-------HHHHHHHHHHHH
Q 006636 246 PDV-VTYNTIATAYAQNGEADQAEEVIVEMEHNG------VQPNGRTCGIIISGYCKEGKI-------KEALRFARTMKE 311 (637)
Q Consensus 246 ~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~-------~~A~~~~~~~~~ 311 (637)
|+. ..-.-....-+..|.+.+|+..+..+.... ...-..++-.+...+.-.|-. +++++.|.-...
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 332 222223334556788888888777664321 001122222222222223322 333333333332
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHh--h----HHH-HHHHHhhCCC--------------------CCCHHHHHHHHHHHH
Q 006636 312 YGVHPNLVIFNLLIKGFVEIMDRD--G----VDE-VLALMKEFRV--------------------NPDVITYSTIMNAWS 364 (637)
Q Consensus 312 ~~~~~~~~~~~~ll~~~~~~~~~~--~----a~~-~~~~~~~~~~--------------------~~~~~~~~~l~~~~~ 364 (637)
+....+...|-.+-++|.-.-..+ - ... ++.++...+. ..+..+|..++..|.
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence 222223333333333221110000 0 000 1111111111 111223333333222
Q ss_pred H----c----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006636 365 T----A----GFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSD 436 (637)
Q Consensus 365 ~----~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 436 (637)
+ . .+...|+..+...++.. ..+...|+.|.-. ...|++.-|...|-+-.... +....+|..+...+...
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n 863 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLEN 863 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEec
Confidence 2 1 12235666666665542 3356667766654 55678888888887766653 66788899999889999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006636 437 GSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK----AFGVHPQKSTFLLLAEARRATGLTKEA 512 (637)
Q Consensus 437 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~~~~~l~~~~~~~g~~~eA 512 (637)
.+++.|...|.+.....+ .|...|..........|+.-++..+|..-. ..|--|+...|.|....-...|+.++-
T Consensus 864 ~d~E~A~~af~~~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~ 942 (1238)
T KOG1127|consen 864 QDFEHAEPAFSSVQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEES 942 (1238)
T ss_pred ccHHHhhHHHHhhhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHH
Confidence 999999999999887543 266678777777777888888888886621 345556666777777777788888777
Q ss_pred HHHHHHHhhh----------hcc-----------ccccccccchHHHHHHHHh---hhccCCCCC-CcccccccccccCC
Q 006636 513 KRILSKIKNK----------ERT-----------NEMEAEEDIPVESLERLYH---KEATTASYP-NLLQIPNVVSSDQK 567 (637)
Q Consensus 513 ~~~~~~~~~~----------~~~-----------~~~~~~~~~a~~~~e~~~~---~~~~~~~y~-~~~~L~~~y~~~g~ 567 (637)
+.-.+++... .|. .+......-+...+.+++. ..-+-..|. +--.++.+|.+.|.
T Consensus 943 I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslge 1022 (1238)
T KOG1127|consen 943 INTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGE 1022 (1238)
T ss_pred HHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcc
Confidence 7666665421 111 0112233344445555543 333444443 33356668888888
Q ss_pred Cchhh
Q 006636 568 GSAAA 572 (637)
Q Consensus 568 ~~~a~ 572 (637)
++.|.
T Consensus 1023 fe~A~ 1027 (1238)
T KOG1127|consen 1023 FESAK 1027 (1238)
T ss_pred hhhHh
Confidence 88554
No 86
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=8.1e-07 Score=92.81 Aligned_cols=417 Identities=12% Similarity=0.088 Sum_probs=238.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006636 75 MTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTL----LAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 150 (637)
|..+.+.+.++|-.+.|++.|..+.. ++...+.-+.+ +..+...-.++.+.+.++.|+..++..|..+...+..
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~D--IKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvat 686 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYD--IKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVAT 686 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHH--HHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 66778888899999999988877653 22221111111 2233344466777888888887777777777666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-----------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH------------h--
Q 006636 151 AFSESGNMEEAMDTFWKMKES-----------GLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMS------------R-- 205 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~-----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------------~-- 205 (637)
-|...-..+.-+++|+..... ++.-|+.+....|.+-++.|++.+..++-++-. +
T Consensus 687 ky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAk 766 (1666)
T KOG0985|consen 687 KYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAK 766 (1666)
T ss_pred HHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcc
Confidence 666665566666666665432 234456666667777778887777666543310 0
Q ss_pred -cC-----------CCCCCHHHH----------------------------------------------------HHHHH
Q 006636 206 -EG-----------NVKPNLRTY----------------------------------------------------NVLVR 221 (637)
Q Consensus 206 -~~-----------~~~~~~~~~----------------------------------------------------~~li~ 221 (637)
.+ ++.+|.+.| .-|..
T Consensus 767 L~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~ 846 (1666)
T KOG0985|consen 767 LTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVE 846 (1666)
T ss_pred ccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHH
Confidence 00 011122211 00111
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHH---HHHH------HHhC-----------C--
Q 006636 222 AWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGE-ADQAEE---VIVE------MEHN-----------G-- 278 (637)
Q Consensus 222 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~---~~~~------~~~~-----------~-- 278 (637)
-.-+.+++.--...++.....|.. |..++|+|...|...++ ++.-++ .|+. ..+. |
T Consensus 847 EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqc 925 (1666)
T KOG0985|consen 847 EVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQC 925 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCC
Confidence 112333444444556666666643 78888888888776543 221111 1111 0111 1
Q ss_pred ------CCCChhhHHHHHHHHHhcCCHHHH-----------HHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHhhHHH
Q 006636 279 ------VQPNGRTCGIIISGYCKEGKIKEA-----------LRFARTMKEYGV--HPNLVIFNLLIKGFVEIMDRDGVDE 339 (637)
Q Consensus 279 ------~~~~~~~~~~li~~~~~~g~~~~A-----------~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~ 339 (637)
+......|-...+.+.+..+.+-- .++.++....++ ..|+...+..+.++...+-..+.++
T Consensus 926 D~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIE 1005 (1666)
T KOG0985|consen 926 DLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIE 1005 (1666)
T ss_pred cHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHH
Confidence 001112233334444444443322 234556655443 2366667777888888888888888
Q ss_pred HHHHHhhCCC--CCCHHHHHHHHH---------------------------HHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 006636 340 VLALMKEFRV--NPDVITYSTIMN---------------------------AWSTAGFMDKCKEIFDDMGKAGIKPDAHA 390 (637)
Q Consensus 340 ~~~~~~~~~~--~~~~~~~~~l~~---------------------------~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 390 (637)
+++.+.-.+. .-+...-+.|+- .+...+-+++|..+|++. ..+...
T Consensus 1006 LLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf-----~~n~~A 1080 (1666)
T KOG0985|consen 1006 LLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKF-----DMNVSA 1080 (1666)
T ss_pred HHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHh-----cccHHH
Confidence 8887643211 111112222221 222333344555555443 123333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006636 391 YSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE 470 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 470 (637)
.+.|+. .-+.++.|.+.-++. ..+..|..+..+-.+.|.+.+|++-|-+. .|+..|..++.++.+
T Consensus 1081 ~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~ 1145 (1666)
T KOG0985|consen 1081 IQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASR 1145 (1666)
T ss_pred HHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHh
Confidence 333332 234455555544443 24678999999999999999998877543 377789999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006636 471 ARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 471 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~ 516 (637)
.|.+++-.+++...++..-+|..+ ..++-+|.+.+++.|-++++
T Consensus 1146 ~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1146 TGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred cCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh
Confidence 999999999888777766666654 45777889999998888776
No 87
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=4.1e-07 Score=82.29 Aligned_cols=291 Identities=12% Similarity=0.075 Sum_probs=185.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHH
Q 006636 75 MTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNA-VINAFS 153 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~ 153 (637)
+++++..+++..++.+|++++..-.++. +.+....+.+..+|-...++..|-..|+++-.. .|...-|.. -...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4556778889999999999998887753 337777888889999999999999999998764 344433322 234455
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006636 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLI--KGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITE 231 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 231 (637)
+.+.+.+|+++...|... ++...-..-+ ....+.+++..+..++++....+ +..+.+...-...+.|++++
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en----~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN----EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC----ccchhccchheeeccccHHH
Confidence 778999999999888653 2222211112 22335788899999999887543 55566666666779999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-------------Chhh-------------
Q 006636 232 AWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQP-------------NGRT------------- 285 (637)
Q Consensus 232 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~~~------------- 285 (637)
|.+-|+...+.+---....|+ +.-+..+.|+++.|++...++++.|++. |+..
T Consensus 163 AvqkFqaAlqvsGyqpllAYn-iALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYN-LALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHH-HHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 999999998765333456666 4445667899999999999998876532 1110
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006636 286 --CGIIISGYCKEGKIKEALRFARTMKE-YGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNA 362 (637)
Q Consensus 286 --~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 362 (637)
+|.-...+.+.|+++.|.+.+-+|.- .....|++|...+.-.-. .+++.+..+-+..+...++ -...||..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CChHHHHHHHHH
Confidence 11112234455666666666666531 112335555544432211 2333444444444444432 345566666666
Q ss_pred HHHcCChhHHHHHHHH
Q 006636 363 WSTAGFMDKCKEIFDD 378 (637)
Q Consensus 363 ~~~~g~~~~a~~~~~~ 378 (637)
|++..-++.|-.++.+
T Consensus 320 yCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAE 335 (459)
T ss_pred HhhhHHHhHHHHHHhh
Confidence 6666666666665544
No 88
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.6e-06 Score=85.11 Aligned_cols=381 Identities=15% Similarity=0.080 Sum_probs=244.3
Q ss_pred ccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006636 67 ESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPS-LVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFF 145 (637)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 145 (637)
..++|.+.|..-..+|+..|++++|++=-.+-.+ ..|+ +..|+....++...|++++|+..|.+-++.. +.+...+
T Consensus 31 l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~ 107 (539)
T KOG0548|consen 31 LSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLK 107 (539)
T ss_pred cCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHH
Confidence 3455889999999999999999999987776665 3565 5689999999999999999999999998875 6677788
Q ss_pred HHHHHHHHhcCCHHHHHHHH------HHHHHC---CCCCCHHHHHHHHHHHHh----------cCChHHHHHHHHHH---
Q 006636 146 NAVINAFSESGNMEEAMDTF------WKMKES---GLTPTTSTYNTLIKGYGI----------AGKPEESVKLLDLM--- 203 (637)
Q Consensus 146 ~~ll~~~~~~g~~~~A~~~~------~~m~~~---~~~~~~~~~~~li~~~~~----------~g~~~~A~~~~~~m--- 203 (637)
+-|..++.... .+.+.| ..+... ........|..++..+-+ -.++..|.-.+...
T Consensus 108 ~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~ 184 (539)
T KOG0548|consen 108 TGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDEL 184 (539)
T ss_pred HhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccc
Confidence 88888872211 111111 111100 000011122333322211 11111221111110
Q ss_pred --HhcC------CCCC------------C----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006636 204 --SREG------NVKP------------N----------LRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNT 253 (637)
Q Consensus 204 --~~~~------~~~~------------~----------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 253 (637)
...+ ...| | ..-...+..+..+..+++.|++-+....... -+..-++.
T Consensus 185 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n 262 (539)
T KOG0548|consen 185 LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNN 262 (539)
T ss_pred cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHH
Confidence 0000 0011 0 0123557777778889999999999888764 45556667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCChh-------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006636 254 IATAYAQNGEADQAEEVIVEMEHNGVQPNGR-------TCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIK 326 (637)
Q Consensus 254 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 326 (637)
...+|...|.+......-+...+.|.. ... .+..+..+|.+.++++.++..|.+.....-.|+..
T Consensus 263 ~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l------- 334 (539)
T KOG0548|consen 263 IAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL------- 334 (539)
T ss_pred HHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH-------
Confidence 777888888888777766665554431 111 22234457777888999999999876543233221
Q ss_pred HHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006636 327 GFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEK 406 (637)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 406 (637)
.+....+++........-.++.. ..-...-...+.+.|++..|...|.++++.. +.|...|.....+|.+.|.+..
T Consensus 335 --s~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~ 410 (539)
T KOG0548|consen 335 --SKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPE 410 (539)
T ss_pred --HHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHH
Confidence 12222344444433333322221 1112223566789999999999999999986 6689999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006636 407 AEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE 470 (637)
Q Consensus 407 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 470 (637)
|+.-.+..++.+ ++....|..=..++....+++.|++.|++.++.+ |+..-+..-+.-|..
T Consensus 411 aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 411 ALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHH
Confidence 999999988874 5566677777777778889999999999999854 666555555555555
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.06 E-value=1.8e-06 Score=87.04 Aligned_cols=23 Identities=13% Similarity=0.185 Sum_probs=12.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 006636 394 LAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
.+.++...|+.+.|..++..+..
T Consensus 270 ~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 270 AALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHH
Confidence 44445556666666666655543
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.03 E-value=2e-06 Score=86.81 Aligned_cols=199 Identities=10% Similarity=-0.023 Sum_probs=106.7
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006636 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGH-KPSLVT-YTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVI 149 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 149 (637)
+..|..+...+...|+.+.+.+.+........ .++... .......+...|+++.|...+++..+.. |.|...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 44455566666667777776666666554211 112211 1112233455677777777777776653 444434332 1
Q ss_pred HHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 006636 150 NAFS----ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCN 225 (637)
Q Consensus 150 ~~~~----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 225 (637)
..+. ..+....+.+.++..... .+........+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHH
Confidence 1222 233444444444431111 11122333445556667777777777777776653 4445566666677777
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006636 226 EKNITEAWNVMHKMAASGM-KPDV--VTYNTIATAYAQNGEADQAEEVIVEME 275 (637)
Q Consensus 226 ~g~~~~A~~~~~~~~~~g~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~ 275 (637)
.|++++|...+++...... .++. ..|..+...+...|++++|..++++..
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 7777777777776665321 1121 234456666667777777777776654
No 91
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=7.5e-06 Score=81.38 Aligned_cols=219 Identities=11% Similarity=0.017 Sum_probs=136.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 006636 114 LAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKP 193 (637)
Q Consensus 114 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 193 (637)
++-+...+++++|.....+++..+ +.|...+..=+-++.+.+.+++|+.+.+.-... ..+.+-+.--..+..+.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 455567789999999999999876 666777777777888999999999665543321 11111111122333478999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006636 194 EESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKP-DVVTYNTIATAYAQNGEADQAEEVIV 272 (637)
Q Consensus 194 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 272 (637)
++|+..++-.. +.|..+...-...+.+.|++++|+.+|+.+.+.+.+- +...-..++..- .-..+. +.+
T Consensus 96 Dealk~~~~~~-----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l~~~-~~q 165 (652)
T KOG2376|consen 96 DEALKTLKGLD-----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AALQVQ-LLQ 165 (652)
T ss_pred HHHHHHHhccc-----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----HhhhHH-HHH
Confidence 99999998332 2345567777788899999999999999998765321 111112222111 111111 122
Q ss_pred HHHhCCCCCChhhHH---HHHHHHHhcCCHHHHHHHHHHHHHCC-------CCC--CH-----HHHHHHHHHHHHcCCHh
Q 006636 273 EMEHNGVQPNGRTCG---IIISGYCKEGKIKEALRFARTMKEYG-------VHP--NL-----VIFNLLIKGFVEIMDRD 335 (637)
Q Consensus 273 ~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~--~~-----~~~~~ll~~~~~~~~~~ 335 (637)
. ....| ..+|. .....+...|++.+|++++....+.+ -.- +. ..-..+.-.+...|+..
T Consensus 166 ~---v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 166 S---VPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred h---ccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 2 11122 22333 34556778999999999999883221 011 11 12233445567889999
Q ss_pred hHHHHHHHHhhCCC
Q 006636 336 GVDEVLALMKEFRV 349 (637)
Q Consensus 336 ~a~~~~~~~~~~~~ 349 (637)
+|..++...++...
T Consensus 242 ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 242 EASSIYVDIIKRNP 255 (652)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999888763
No 92
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.98 E-value=1.2e-06 Score=88.49 Aligned_cols=192 Identities=15% Similarity=0.159 Sum_probs=93.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChh
Q 006636 291 SGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMD 370 (637)
Q Consensus 291 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 370 (637)
.+-.....+.+|+.+++.+.... ....-|..+.+.|+..|+++.|.++|.... .++..|.+|.+.|+++
T Consensus 740 eaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence 34444555666666665554431 122234455555666666666666554321 2334455566666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006636 371 KCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMC 450 (637)
Q Consensus 371 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (637)
+|.++-.+.. |.......|-+-..-+-++|++.+|.+++-.+. .|+. .|..|-++|..+..+++.++-.
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhC
Confidence 6665554432 222333444444444455666666655554432 3332 2445555565555555544321
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006636 451 EHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 451 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~ 516 (637)
- ..-..|...+..-+...|+.+.|...|-+.. -|...+++|...+.+++|.++.
T Consensus 878 ~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 878 G---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred h---hhhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 1 0112344455555555666665555543321 1334445555555555555544
No 93
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.95 E-value=3.3e-05 Score=71.72 Aligned_cols=318 Identities=12% Similarity=0.103 Sum_probs=184.4
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHH
Q 006636 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIF-FNAV 148 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l 148 (637)
.++.-.-.|.+.+..+|++..|+.-|...++.+ +.+-.++..-...|...|+...|+.-+.+.++. .||-.. -..-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 344445567788888899999999999887631 223334444467788888888888888888774 666432 2223
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHH------------HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHH
Q 006636 149 INAFSESGNMEEAMDTFWKMKESGLTPTT--STY------------NTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLR 214 (637)
Q Consensus 149 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 214 (637)
...+.+.|.+++|..=|+.+.+..+.... ..+ ...+..+...|+...|+.....+.+.. +.|..
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~--~Wda~ 190 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ--PWDAS 190 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC--cchhH
Confidence 45677889999999999988876432111 111 112223344555566666666555542 44555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 006636 215 TYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYC 294 (637)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 294 (637)
.+..-..+|...|.+..|+.-++...+.. .-+..++.-+...+...|+.+.++...++.++. .||...+- .
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf------~ 261 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCF------P 261 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHH------H
Confidence 55555556666666666555555444332 123333444455555556655555555555543 23322111 1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHH---HHHHHHHHHHcCChhH
Q 006636 295 KEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVIT---YSTIMNAWSTAGFMDK 371 (637)
Q Consensus 295 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~ 371 (637)
--..+.+..+.+..|. .....+++.++.+..+...+..+....+. +..+-.++...+++.+
T Consensus 262 ~YKklkKv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~e 325 (504)
T KOG0624|consen 262 FYKKLKKVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGE 325 (504)
T ss_pred HHHHHHHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHH
Confidence 1111122222222221 12344555666666666655543322333 3344456667788888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006636 372 CKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESG 418 (637)
Q Consensus 372 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 418 (637)
|++.-.+++... +.|+.++.--..+|.-...++.|+.-|+...+.+
T Consensus 326 AiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 326 AIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 888888887652 3347788888888888888888888888888753
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.94 E-value=1.3e-05 Score=74.33 Aligned_cols=316 Identities=10% Similarity=0.045 Sum_probs=201.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHH-HHH
Q 006636 140 PDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRT-YNV 218 (637)
Q Consensus 140 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~~ 218 (637)
.++.-..-+...+...|++.+|+.-|...++.++. +-.++..-...|...|+..-|+.-+.+..+. +||-.. -..
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel---KpDF~~ARiQ 111 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL---KPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc---CccHHHHHHH
Confidence 45556667778888888888888888888875321 2223333456788888888888888888774 566432 222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 006636 219 LVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGK 298 (637)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 298 (637)
-...+.+.|.+++|..-|+..++.. |+..+ ...++.+.-..++- ......+..+...|+
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~----------------~~l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEH----------------WVLVQQLKSASGSGD 170 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHH----------------HHHHHHHHHHhcCCc
Confidence 3455677888888888888887653 33211 11122211111111 112233445566788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 006636 299 IKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDD 378 (637)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 378 (637)
...|+.....+++.. +.|...+..-..+|...|++..|+.-++...+... .+..++--+-..+...|+.+.++...++
T Consensus 171 ~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred hhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 888888888887764 55777777788888888888888887777766543 3455555666677788888888888888
Q ss_pred HHHCCCCCCHHHHHHHH-------------HHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHH
Q 006636 379 MGKAGIKPDAHAYSILA-------------KGYVREQEPEKAEELLMTMIESGFHPNVV---IFTTIISGWCSDGSMDRA 442 (637)
Q Consensus 379 ~~~~~~~~~~~~~~~l~-------------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A 442 (637)
.++. .||....-..- ......++|.++++-.+...+.......+ .+..+-.++...|++.+|
T Consensus 249 CLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eA 326 (504)
T KOG0624|consen 249 CLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEA 326 (504)
T ss_pred HHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHH
Confidence 8875 45543322211 11234566667776666666542111122 333455566667777888
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006636 443 IEVFDKMCEHGVSPN-LKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 443 ~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
++.-.+.++. .|| ..++.--..+|.-...+++|+.-|+...+
T Consensus 327 iqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 327 IQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 8777777763 344 55677777777777777778777777766
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.91 E-value=8.3e-08 Score=91.70 Aligned_cols=248 Identities=13% Similarity=0.099 Sum_probs=120.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 006636 223 WCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEA 302 (637)
Q Consensus 223 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 302 (637)
+.-.|++..++.-.+ ........+......+.+++...|+++.++ .++.... .|.......+...+....+-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 334566666554443 111111112333444566666666655433 2222222 34444444443333322333444
Q ss_pred HHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006636 303 LRFARTMKEYGVH-PNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGK 381 (637)
Q Consensus 303 ~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 381 (637)
+.-+++....... .+..........+...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4433333222211 12222222223344456666665555321 3455555666667777777777777777665
Q ss_pred CCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006636 382 AGIKPDAHAYSILAKGYVR----EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPN 457 (637)
Q Consensus 382 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 457 (637)
. ..| .+...|+.++.. .+.+.+|..+|+++.+. .++++.+.+.+..++...|++++|.+++++..+.+.. |
T Consensus 160 ~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~ 234 (290)
T PF04733_consen 160 I--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-D 234 (290)
T ss_dssp C--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-H
T ss_pred c--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-C
Confidence 3 223 233333333322 23567777777776554 3566677777777777777777777777776654322 4
Q ss_pred HHHHHHHHHHHHhcCCh-hHHHHHHHHHHH
Q 006636 458 LKTFETLMWGYSEARQP-WRAEEILQIMKA 486 (637)
Q Consensus 458 ~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~ 486 (637)
+.++..++.+..+.|+. +.+.++++++..
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 55666667666777766 445556666654
No 96
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.90 E-value=9.8e-05 Score=72.88 Aligned_cols=136 Identities=11% Similarity=0.147 Sum_probs=94.3
Q ss_pred ccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006636 67 ESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
..+.|+.+|+.||+-+..+ ..+++++.++++... .+-.+..|..-|..-.+.++++....+|.+.+.. ..+...|.
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~ 90 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWK 90 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHH
Confidence 4567899999999988766 999999999999863 3446778888999999999999999999998875 34567777
Q ss_pred HHHHHHHh-cCCHHH----HHHHHHHH-HHCCCCCC-HHHHHHHHHH---------HHhcCChHHHHHHHHHHHhc
Q 006636 147 AVINAFSE-SGNMEE----AMDTFWKM-KESGLTPT-TSTYNTLIKG---------YGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 147 ~ll~~~~~-~g~~~~----A~~~~~~m-~~~~~~~~-~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~ 206 (637)
.-+.---+ .|+... ..+.|+-. .+.|+.+- -..|+..+.. |..+.+++..++++.++...
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 66653332 233222 23334433 33443332 3346665554 34455778888888888753
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.90 E-value=1.5e-05 Score=91.27 Aligned_cols=265 Identities=13% Similarity=0.068 Sum_probs=111.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCChhhHHHHHHH
Q 006636 222 AWCNEKNITEAWNVMHKMAASGMKPDV----VTYNTIATAYAQNGEADQAEEVIVEMEHN----GV-QPNGRTCGIIISG 292 (637)
Q Consensus 222 ~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~ 292 (637)
.+...|++++|...+++....-...+. ...+.+...+...|++++|...+.+.... |. .....+...+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 344556666666666555442111111 12333444455566666666665554421 10 0011223344445
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCC--CCC--CHHHHHHHHH
Q 006636 293 YCKEGKIKEALRFARTMKEY----GVH--P-NLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR--VNP--DVITYSTIMN 361 (637)
Q Consensus 293 ~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~ 361 (637)
+...|++++|...+++.... +.. + ....+..+...+...|++++|...+....... ..+ ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 55566666666655554321 110 0 11222333344444566666655555443210 001 1222333344
Q ss_pred HHHHcCChhHHHHHHHHHHHCC--CCCCHH--HH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHH
Q 006636 362 AWSTAGFMDKCKEIFDDMGKAG--IKPDAH--AY--SILAKGYVREQEPEKAEELLMTMIESGFHPNV---VIFTTIISG 432 (637)
Q Consensus 362 ~~~~~g~~~~a~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~ 432 (637)
.+...|+.+.|...+....... ...... .. ...+..+...|+.+.|..++............ ..+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 4555566666655555543210 000000 00 00112233455555555555443321100000 112334444
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006636 433 WCSDGSMDRAIEVFDKMCEH----GVSPNL-KTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
+...|+.++|...+++.... |..++. .+...+..++...|+.++|...+.+..+
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55556666666665555431 221111 2344445555556666666666555543
No 98
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.89 E-value=5.8e-06 Score=83.78 Aligned_cols=205 Identities=17% Similarity=0.187 Sum_probs=126.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006636 360 MNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSM 439 (637)
Q Consensus 360 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 439 (637)
+.+-.....+.+|+.+++.+.... .-..-|-.+.+-|+..|+++.|.++|.+.- .++-.|..|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 344455667777887777776542 233445666777888888888888776542 244556778888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006636 440 DRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 440 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
..|.++-++.. |.......|..-..-+-.+|++.+|.+++-... .|+. .+.+|.+.|..++.+++.++-
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 88877766553 333344556666666777788888777764431 3443 345677778878777777765
Q ss_pred hhhhccc---------cccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhhhccccccCcccchh
Q 006636 520 KNKERTN---------EMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDADSSLECS 590 (637)
Q Consensus 520 ~~~~~~~---------~~~~~~~~a~~~~e~~~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~~~~k~~g~s 590 (637)
.-...|. +..++++.|+.. .++...-.+ --|+|-..+.|++|-++-+.--..+..|...+-
T Consensus 877 h~d~l~dt~~~f~~e~e~~g~lkaae~~---flea~d~ka-------avnmyk~s~lw~dayriaktegg~n~~k~v~fl 946 (1636)
T KOG3616|consen 877 HGDHLHDTHKHFAKELEAEGDLKAAEEH---FLEAGDFKA-------AVNMYKASELWEDAYRIAKTEGGANAEKHVAFL 946 (1636)
T ss_pred ChhhhhHHHHHHHHHHHhccChhHHHHH---HHhhhhHHH-------HHHHhhhhhhHHHHHHHHhccccccHHHHHHHH
Confidence 3221110 112333222211 122111111 237899999999999988887777888888888
Q ss_pred hh-hcch
Q 006636 591 WF-ATTS 596 (637)
Q Consensus 591 wi-~~~~ 596 (637)
|- .++|
T Consensus 947 waksigg 953 (1636)
T KOG3616|consen 947 WAKSIGG 953 (1636)
T ss_pred HHHhhCc
Confidence 85 3344
No 99
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.88 E-value=6.5e-08 Score=92.41 Aligned_cols=250 Identities=16% Similarity=0.168 Sum_probs=165.0
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhH
Q 006636 258 YAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGV 337 (637)
Q Consensus 258 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 337 (637)
+.-.|++..++.-.+ ......+.+......+.++|...|+++.++. ++.... .|.......+...+....+.+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 444688888876555 2222222234455567788899998776543 333333 56666665555544443455555
Q ss_pred HHHHHHHhhCCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006636 338 DEVLALMKEFRVN-PDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 338 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
..-++........ .+.........++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555554433322 23333334445667789999999887642 4677778889999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHH--hc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 006636 417 SGFHPNVVIFTTIISGWC--SD--GSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ 492 (637)
Q Consensus 417 ~~~~~~~~~~~~li~~~~--~~--g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 492 (637)
. ..|. +...+..++. .. ..+++|..+|+++.+. ..+++.+.+.+..+....|++++|.+++++... ..|+
T Consensus 160 ~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--~~~~ 233 (290)
T PF04733_consen 160 I--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--KDPN 233 (290)
T ss_dssp C--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--C-CC
T ss_pred c--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccC
Confidence 5 3443 3333444333 23 3699999999998764 557889999999999999999999999998764 3444
Q ss_pred -HHHHHHHHHHHHHcCCH-HHHHHHHHHHhhhhc
Q 006636 493 -KSTFLLLAEARRATGLT-KEAKRILSKIKNKER 524 (637)
Q Consensus 493 -~~~~~~l~~~~~~~g~~-~eA~~~~~~~~~~~~ 524 (637)
..+...++-+....|+. +.+.+++.++....|
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 55788888888889988 778899999876655
No 100
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=6e-07 Score=88.89 Aligned_cols=220 Identities=14% Similarity=0.097 Sum_probs=121.6
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006636 80 NSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNME 159 (637)
Q Consensus 80 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 159 (637)
..+.++|++.+|.-.|+..+..+ +-+..+|..|....+..++-..|+..+++.++.. +.+....-.|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34567777777777777776642 3366677777777777777777777777777765 555666777777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHH-----------HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 006636 160 EAMDTFWKMKESGLTPTTSTYNTLIK-----------GYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN 228 (637)
Q Consensus 160 ~A~~~~~~m~~~~~~~~~~~~~~li~-----------~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 228 (637)
+|++.++.-+...++ |..+.. .+.....+....++|-++.......+|......|.-.|--.|+
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 777777766543221 111110 1111112233344444444433223455555555555555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHH
Q 006636 229 ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPN-GRTCGIIISGYCKEGKIKEALRFAR 307 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~ 307 (637)
+++|...|+.++... +-|..+||-|...++...+.++|+..|.+.++. +|+ +.+...|.-.|...|.+++|.+.|-
T Consensus 446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 555555555555442 224455555555555555555555555555543 232 3444445555555555555555544
Q ss_pred HH
Q 006636 308 TM 309 (637)
Q Consensus 308 ~~ 309 (637)
..
T Consensus 523 ~A 524 (579)
T KOG1125|consen 523 EA 524 (579)
T ss_pred HH
Confidence 43
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.88 E-value=2.2e-05 Score=89.92 Aligned_cols=336 Identities=12% Similarity=0.022 Sum_probs=211.7
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------CCC--HHHHHHHHHHH
Q 006636 187 YGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGM------KPD--VVTYNTIATAY 258 (637)
Q Consensus 187 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~------~~~--~~~~~~li~~~ 258 (637)
....|+++.+...++.+.... ...+..........+...|++++|..++......-- .+. ......+...+
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~-~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEV-LLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHH-HhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 445677777777766653211 011222233445556678999999999987754310 111 11222334556
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHH
Q 006636 259 AQNGEADQAEEVIVEMEHNGVQPNG----RTCGIIISGYCKEGKIKEALRFARTMKEYGV---HPN--LVIFNLLIKGFV 329 (637)
Q Consensus 259 ~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~~~~~ll~~~~ 329 (637)
...|+++.|...+++....-...+. ...+.+...+...|++++|...+.+.....- .+. ..++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 7889999999999987763211221 2345566777889999999999988764210 111 234455667788
Q ss_pred HcCCHhhHHHHHHHHhh----CCCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC--CCCC--CHHHHHHHHHHH
Q 006636 330 EIMDRDGVDEVLALMKE----FRVN--P-DVITYSTIMNAWSTAGFMDKCKEIFDDMGKA--GIKP--DAHAYSILAKGY 398 (637)
Q Consensus 330 ~~~~~~~a~~~~~~~~~----~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~--~~~~~~~l~~~~ 398 (637)
..|++++|...+.+... .+.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 89999999998877543 2211 1 2233445566677789999999999887542 1112 234455566778
Q ss_pred HHcCCHHHHHHHHHHHHHCCC-CCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHH
Q 006636 399 VREQEPEKAEELLMTMIESGF-HPNVVIF-----TTIISGWCSDGSMDRAIEVFDKMCEHGVSPNL---KTFETLMWGYS 469 (637)
Q Consensus 399 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~ 469 (637)
...|+++.|...+.+...... ......+ ...+..+...|+.+.|...+............ ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 899999999999988754210 1111111 11224455689999999998775542111111 12456677888
Q ss_pred hcCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh
Q 006636 470 EARQPWRAEEILQIMKA----FGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 470 ~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 523 (637)
..|+.++|...+++... .|..++ ..+...+..++.+.|+.++|...+.++....
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999988753 343333 2356677788999999999999999987653
No 102
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=0.00012 Score=75.52 Aligned_cols=331 Identities=17% Similarity=0.166 Sum_probs=160.0
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---------CCCCCHHHHHHHHHHH
Q 006636 82 LIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEEN---------GMDPDSIFFNAVINAF 152 (637)
Q Consensus 82 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~~ll~~~ 152 (637)
|..-|+.+.|.+-.+-+.. ...|..+.+.|.+..+++-|.-.+..|... .-.++ ..-..+.-..
T Consensus 738 yvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 4456666666666555542 234666666666655555544444433211 00111 1112222223
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006636 153 SESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEA 232 (637)
Q Consensus 153 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A 232 (637)
...|.+++|..+|.+-.+ |..|=+.|-..|.+++|.++-+.--+ +. =..||.....-+-..++.+.|
T Consensus 811 ieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DR---iH-Lr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDR---IH-LRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccc---ee-hhhhHHHHHHHHHhhccHHHH
Confidence 455666666666666554 33344455556666666655443221 11 123344444444444444444
Q ss_pred HHHHHHH----------HHCC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----------C-----
Q 006636 233 WNVMHKM----------AASG---------MKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHN----------G----- 278 (637)
Q Consensus 233 ~~~~~~~----------~~~g---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~----- 278 (637)
++.|++. +... -..|...|.-........|+.+.|+.+|...... |
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kA 957 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKA 957 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHH
Confidence 4444331 1110 0124444554555555566666666666554321 0
Q ss_pred -----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHh---------------hHH
Q 006636 279 -----VQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRD---------------GVD 338 (637)
Q Consensus 279 -----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---------------~a~ 338 (637)
-..|......|.+.|-..|++.+|..+|.+... +...|..|-.++-.+ .|.
T Consensus 958 a~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aA 1028 (1416)
T KOG3617|consen 958 ARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAA 1028 (1416)
T ss_pred HHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHH
Confidence 013455566677888888888888887766642 222333222221111 111
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH--------HHH--CCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006636 339 EVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDD--------MGK--AGIKPDAHAYSILAKGYVREQEPEKAE 408 (637)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~--------~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~ 408 (637)
+.|++ .|. -+...+..|-+.|.+.+|+++-=. ++. .....|+...+.-.+.+....++++|.
T Consensus 1029 rYyEe---~g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV 1100 (1416)
T KOG3617|consen 1029 RYYEE---LGG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAV 1100 (1416)
T ss_pred HHHHH---cch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHH
Confidence 12211 111 012233445666666666554211 111 222346666666666667777777776
Q ss_pred HHHHHHHH----------CCC----------------CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006636 409 ELLMTMIE----------SGF----------------HPNV----VIFTTIISGWCSDGSMDRAIEVFDKM 449 (637)
Q Consensus 409 ~~~~~~~~----------~~~----------------~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m 449 (637)
.++-...+ .++ .|+. .....+...|.++|.+..|-+-|.++
T Consensus 1101 ~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1101 NLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 66543221 111 1222 24556677888888888887766543
No 103
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=2.2e-05 Score=71.32 Aligned_cols=291 Identities=10% Similarity=0.095 Sum_probs=189.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHH
Q 006636 110 YTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYN-TLIKGYG 188 (637)
Q Consensus 110 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~li~~~~ 188 (637)
+.+++..+.+..++..|++++..-.++. +.+....+.|...|-...++..|-..++++...- |...-|. .-...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence 4556666667788999999888777765 5577788888899999999999999999998763 3333332 2345566
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006636 189 IAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRA--WCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQ 266 (637)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 266 (637)
+.+.+..|+++...|... ++...-..-+.+ ....+++..+..++++....| +..+.+...-...+.|+++.
T Consensus 90 ~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 889999999999888642 222222222222 335778888888888876433 45555556666778999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-------------CHH--------HHHHHH
Q 006636 267 AEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHP-------------NLV--------IFNLLI 325 (637)
Q Consensus 267 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~~--------~~~~ll 325 (637)
|.+-|+...+-+--.....|+.-+ +..+.|+.+.|++...++++.|++. |+. .-+.++
T Consensus 163 AvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 999999887754323345566544 4557789999999999998876421 211 112222
Q ss_pred -------HHHHHcCCHhhHHHHHHHHhh-CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006636 326 -------KGFVEIMDRDGVDEVLALMKE-FRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKG 397 (637)
Q Consensus 326 -------~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 397 (637)
..+-+.++++.|.+.+..|.- .....|++|...+.-. -..+++-....-+.-+...+. -...+|..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHH
Confidence 234466777777777776632 2223455555443322 123445555555555555532 345677777777
Q ss_pred HHHcCCHHHHHHHHHH
Q 006636 398 YVREQEPEKAEELLMT 413 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~ 413 (637)
|+|+.-++.|.+++.+
T Consensus 320 yCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAE 335 (459)
T ss_pred HhhhHHHhHHHHHHhh
Confidence 8888888877777755
No 104
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.80 E-value=1.3e-05 Score=84.42 Aligned_cols=441 Identities=13% Similarity=-0.008 Sum_probs=276.6
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006636 122 RFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLD 201 (637)
Q Consensus 122 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 201 (637)
+...+...|-+..+.. +.-...|..|...|...-+...|.+.|++..+.+.. +...+-.....|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHH
Confidence 4666777776666653 333567999999999988999999999999987644 77889999999999999999999955
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 006636 202 LMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQP 281 (637)
Q Consensus 202 ~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 281 (637)
...+......-...|.-..-.|.+.++...|..-|+...+.. +.|...|..+..+|..+|.+..|.++|.+..... |
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--P 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--c
Confidence 444432111123345555667889999999999999998775 4478899999999999999999999999887653 3
Q ss_pred C-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCC-CHHHHHHHHHHHHHcCCHhh-------HHHHHHHHhhC
Q 006636 282 N-GRTCGIIISGYCKEGKIKEALRFARTMKEYG-----VHP-NLVIFNLLIKGFVEIMDRDG-------VDEVLALMKEF 347 (637)
Q Consensus 282 ~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~-~~~~~~~ll~~~~~~~~~~~-------a~~~~~~~~~~ 347 (637)
+ ...--.....-+..|.+.+|+..+....... ... -..++..+...+.-.|-... +.+.|.-...+
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3 2222334455677899999998887775431 011 11222222222222222222 22222222222
Q ss_pred CCCCCHHHHHHHHHHHH-----------------------HcCCh---h---HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006636 348 RVNPDVITYSTIMNAWS-----------------------TAGFM---D---KCKEIFDDMGKAGIKPDAHAYSILAKGY 398 (637)
Q Consensus 348 ~~~~~~~~~~~l~~~~~-----------------------~~g~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 398 (637)
....+...|-.+-++|. ..+.. + .+.+.+-.-. ....+...|..|+..|
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHMYPWYNLGINY 785 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhccchHHHHhHHH
Confidence 21122222222222221 11111 1 0111111111 1122344555555555
Q ss_pred HH----c----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006636 399 VR----E----QEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE 470 (637)
Q Consensus 399 ~~----~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 470 (637)
.+ + .+...|+..+.+.++.. ..+..+|+.|.-. ...|++.-|.-.|-+-..... -+..+|..+.-.|..
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep-~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEP-TCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccc-cchhheeccceeEEe
Confidence 43 1 23346888888887763 5677888888776 667888888888877766432 256689999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc-------------------c----
Q 006636 471 ARQPWRAEEILQIMKAFGVHPQKS-TFLLLAEARRATGLTKEAKRILSKIKNKERT-------------------N---- 526 (637)
Q Consensus 471 ~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~-------------------~---- 526 (637)
..+++.|...|.+.+. +.|+.. -|....-.....|+.-++..+|.---+...+ +
T Consensus 863 n~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e 940 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIE 940 (1238)
T ss_pred cccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchH
Confidence 9999999999998876 556543 5666666667778777777777662111100 0
Q ss_pred ---cccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhh
Q 006636 527 ---EMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKG 576 (637)
Q Consensus 527 ---~~~~~~~~a~~~~e~~~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~ 576 (637)
...+...-|..++++.+...|+... +|...+.+..+.+.+.+|.....
T Consensus 941 ~~I~t~~ki~sAs~al~~yf~~~p~~~f--Ay~~~gstlEhL~ey~~a~ela~ 991 (1238)
T KOG1127|consen 941 ESINTARKISSASLALSYYFLGHPQLCF--AYAANGSTLEHLEEYRAALELAT 991 (1238)
T ss_pred HHHHHhhhhhhhHHHHHHHHhcCcchhH--HHHHHHhHHHHHHHHHHHHHHHH
Confidence 0112223344567777777777655 45556666677777777766543
No 105
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=1.2e-06 Score=86.74 Aligned_cols=247 Identities=9% Similarity=0.073 Sum_probs=111.1
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006636 189 IAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAE 268 (637)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 268 (637)
+.|++.+|.-.|+...... |.+...|-.|......+++-..|+..+++..+.. +-+....-.|.-.|...|.-..|.
T Consensus 297 ~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred hcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 4455555555555444443 3344555555555555555555555555544432 113344444444455555544555
Q ss_pred HHHHHHHhCCCC--------CChhhHHHHHHHHHhcCCHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHcCCHhhHHH
Q 006636 269 EVIVEMEHNGVQ--------PNGRTCGIIISGYCKEGKIKEALRFARTM-KEYGVHPNLVIFNLLIKGFVEIMDRDGVDE 339 (637)
Q Consensus 269 ~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 339 (637)
..++.-+...++ ++...-.. ..+.....+....++|-++ ...+..+|+.+...|.-.|--.|+++.|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 444443322110 00000000 0111111122223333333 223323455555555555555555666666
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-
Q 006636 340 VLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD-AHAYSILAKGYVREQEPEKAEELLMTMIES- 417 (637)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 417 (637)
.|+..+... +.|..+||.|...++...+.++|+..|++.++. .|. +.+...|.-.|...|.+++|.+.|-..+..
T Consensus 452 cf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 452 CFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 665555543 235555666666666666666666666665554 222 333444555556666666665555543321
Q ss_pred --------CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006636 418 --------GFHPNVVIFTTIISGWCSDGSMDRAI 443 (637)
Q Consensus 418 --------~~~~~~~~~~~li~~~~~~g~~~~A~ 443 (637)
...++..+|..|=.++.-.++.+-+.
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 01123345555555555555544333
No 106
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=0.00017 Score=74.62 Aligned_cols=370 Identities=12% Similarity=0.082 Sum_probs=207.6
Q ss_pred CCHHHHHHHH--HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------CC
Q 006636 105 PSLVTYTTLL--AALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKES---------GL 173 (637)
Q Consensus 105 ~~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~---------~~ 173 (637)
-|..|-..++ +.|..-|+.+.|.+-.+.+.. ..+|..+.++|.+..+++-|.-.+..|... .-
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 4777777776 446677999999888776553 367999999999988887776665544322 11
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006636 174 TPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNT 253 (637)
Q Consensus 174 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 253 (637)
.|+ ..-....-.-...|.+++|..+|.+-.+ |..|=..|-..|.+++|+++-+.=-+.. =..||..
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~ 863 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYN 863 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHH
Confidence 122 2222233344578999999999998865 4445566788999999998865432222 2356666
Q ss_pred HHHHHHHcCCHHHHHHHHHHH----------HhCCC---------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006636 254 IATAYAQNGEADQAEEVIVEM----------EHNGV---------QPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGV 314 (637)
Q Consensus 254 li~~~~~~g~~~~A~~~~~~~----------~~~~~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 314 (637)
-...+...++.+.|++.|++. +...+ ..|...|.--....-..|+++.|+.+|....+
T Consensus 864 yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--- 940 (1416)
T KOG3617|consen 864 YAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--- 940 (1416)
T ss_pred HHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---
Confidence 677777788888888877652 22211 12344444444555568999999998877754
Q ss_pred CCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC--------CCC
Q 006636 315 HPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAG--------IKP 386 (637)
Q Consensus 315 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~ 386 (637)
|-+++...+-.|+.++|.++-++- -|....-.+...|...|++.+|...|.+..... -..
T Consensus 941 ------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~ 1008 (1416)
T KOG3617|consen 941 ------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM 1008 (1416)
T ss_pred ------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 233444444445555544443321 133333344455555555555555444321100 000
Q ss_pred CHHHH-------------------------HHHHHHHHHcCCHHHHHHHHHH--------HHHC--CCCCCHHHHHHHHH
Q 006636 387 DAHAY-------------------------SILAKGYVREQEPEKAEELLMT--------MIES--GFHPNVVIFTTIIS 431 (637)
Q Consensus 387 ~~~~~-------------------------~~l~~~~~~~g~~~~A~~~~~~--------~~~~--~~~~~~~~~~~li~ 431 (637)
+...+ .--+..|-+.|.+.+|+++--+ ++.. .-..|+...+.-..
T Consensus 1009 ~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rcad 1088 (1416)
T KOG3617|consen 1009 KDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCAD 1088 (1416)
T ss_pred HHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 11111 1122335555555555544211 1111 12345556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-HCCCCCCH----HHHHHHHHHHHHc
Q 006636 432 GWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK-AFGVHPQK----STFLLLAEARRAT 506 (637)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~p~~----~~~~~l~~~~~~~ 506 (637)
-++.+.++++|..++-...+ |..-+..|...| +.-..++-+.|. ...-.|+. .....+.+.|.++
T Consensus 1089 FF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQ 1158 (1416)
T KOG3617|consen 1089 FFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQ 1158 (1416)
T ss_pred HHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhc
Confidence 66666677777666655443 222233333322 222233333332 12123332 3566778899999
Q ss_pred CCHHHHHHHHHHH
Q 006636 507 GLTKEAKRILSKI 519 (637)
Q Consensus 507 g~~~eA~~~~~~~ 519 (637)
|.+..|-+-|-++
T Consensus 1159 G~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1159 GAYHAATKKFTQA 1171 (1416)
T ss_pred cchHHHHHHHhhh
Confidence 9988887777665
No 107
>PLN02789 farnesyltranstransferase
Probab=98.70 E-value=3.1e-05 Score=75.15 Aligned_cols=145 Identities=9% Similarity=0.025 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006636 74 SMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQK-RFNSIHSIMSQVEENGMDPDSIFFNAVINAF 152 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 152 (637)
++..+-..+...++.++|+.+.+++++.. +-+..+|+....++...| ++++++..++++.+.+ +.+..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 44444455555667777777777777632 224455665555555555 4566666666666654 44455565554444
Q ss_pred HhcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 006636 153 SESGNM--EEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAW 223 (637)
Q Consensus 153 ~~~g~~--~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 223 (637)
.+.|.. ++++.+++++.+.++. +..+|+...-++...|+++++++.++++.+.+ +.|..+|+.....+
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl 186 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVI 186 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHH
Confidence 445442 4455555565555433 55556665555556666666666666665543 34455555544443
No 108
>PLN02789 farnesyltranstransferase
Probab=98.70 E-value=3.1e-05 Score=75.19 Aligned_cols=236 Identities=9% Similarity=0.037 Sum_probs=177.1
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHH
Q 006636 86 GKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESG-NMEEAMDT 164 (637)
Q Consensus 86 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~A~~~ 164 (637)
+++.+|...|+.+.. ..+..++|+.++.++++.. +-+..+|+....++...| ++++++..
T Consensus 34 ~~~~~a~~~~ra~l~------------------~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~ 94 (320)
T PLN02789 34 PEFREAMDYFRAVYA------------------SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDF 94 (320)
T ss_pred HHHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHH
Confidence 455666666665543 3467788999999998875 556677887777777777 68999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCh--HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006636 165 FWKMKESGLTPTTSTYNTLIKGYGIAGKP--EESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAAS 242 (637)
Q Consensus 165 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 242 (637)
++++.+..++ +..+|+...-.+.+.|+. ++++.+++++.+.. +.|..+|+...-.+...|+++++++.++++++.
T Consensus 95 ~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 95 AEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred HHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 9999987655 666788776666677763 67899999998875 678999999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHHH
Q 006636 243 GMKPDVVTYNTIATAYAQN---GEA----DQAEEVIVEMEHNGVQPNGRTCGIIISGYCKE----GKIKEALRFARTMKE 311 (637)
Q Consensus 243 g~~~~~~~~~~li~~~~~~---g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~ 311 (637)
+. .|...|+.....+.+. |.. +..+....+++...+ .|...|+.+...+... +...+|...+.+...
T Consensus 172 d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 172 DV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred CC-CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 64 3667777666655554 222 467777767776643 5788899888888773 445678888888776
Q ss_pred CCCCCCHHHHHHHHHHHHHcC------------------CHhhHHHHHHHHhh
Q 006636 312 YGVHPNLVIFNLLIKGFVEIM------------------DRDGVDEVLALMKE 346 (637)
Q Consensus 312 ~~~~~~~~~~~~ll~~~~~~~------------------~~~~a~~~~~~~~~ 346 (637)
.+ +.+......++..|+... ..+.|.+++..+.+
T Consensus 250 ~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~ 301 (320)
T PLN02789 250 KD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEV 301 (320)
T ss_pred cc-CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHh
Confidence 54 556778888888887632 23678888888843
No 109
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=0.00039 Score=73.59 Aligned_cols=201 Identities=13% Similarity=0.179 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006636 248 VVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKG 327 (637)
Q Consensus 248 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 327 (637)
+..|..+..+-.+.|...+|.+-|-+. .|+..|..+++...+.|.+++-.+++...++..-.|.+ =+.++-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHH
Confidence 345555555555555555555544322 24455555555555555555555555554444322222 2344555
Q ss_pred HHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006636 328 FVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKA 407 (637)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 407 (637)
|++.++..+..+++ ..|+......+.+-|...+.++.|.-+|..+ ..|..|...+...|++..|
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHH
Confidence 55555544443332 1244444455555555555555555444332 2344455555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006636 408 EELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQI 483 (637)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 483 (637)
.+.-++. .+..+|..+-.+|...+.+.-| +|....+-....-...|+.-|...|-++|-+.+++.
T Consensus 1240 VD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1240 VDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 5444433 2445555555555544443322 122222222333444555555555655555555443
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.68 E-value=1.8e-05 Score=86.20 Aligned_cols=207 Identities=11% Similarity=0.046 Sum_probs=137.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChh
Q 006636 210 KPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKP-----DVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGR 284 (637)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 284 (637)
|.+...|-..+......++.++|.++.++++.. +.+ -...|.++++.-..-|.-+...++|+++.+.. ....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 344667777777778888888888888777653 211 13466677776666777777777887776641 2345
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCC-CHHHHHHHHHHH
Q 006636 285 TCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNP-DVITYSTIMNAW 363 (637)
Q Consensus 285 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 363 (637)
+|..|...|.+.+.+++|.++++.|.+.- .-...+|...+..+.+..+-+.|..++....+.-++. ......-.+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 67777778888888888888888886542 2455677777777777777777777777766543221 223334444445
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006636 364 STAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHP 421 (637)
Q Consensus 364 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 421 (637)
.+.|+.+.++.+|+..+... +.-...|+.++++-.++|+.+.++.+|++++..++.|
T Consensus 1611 Fk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 56777777777777766542 3356677777777777777777777777777666544
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=3.5e-06 Score=85.79 Aligned_cols=222 Identities=13% Similarity=0.119 Sum_probs=176.7
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHH
Q 006636 280 QPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTI 359 (637)
Q Consensus 280 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 359 (637)
+|-...-..+...+...|-...|+.+|+++. .|...+..|...|+...|..+..+-.+ -+||+..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence 3334445667888999999999999998764 577788889999999999999888877 36899999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006636 360 MNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSM 439 (637)
Q Consensus 360 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 439 (637)
.+......-+++|.++.+..... +-..+.......++++++.+.|+.-.+.+ +--..+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 88877777788888888775432 22223333345789999999999887764 66778999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006636 440 DRAIEVFDKMCEHGVSPNL-KTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSK 518 (637)
Q Consensus 440 ~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~ 518 (637)
+.|.+.|..-... .||. ..|+.+..+|.+.|+..+|...+++..+.+.. +...|....-+....|.+++|.+.+.+
T Consensus 536 q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 536 QAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHH
Confidence 9999999998874 4554 58999999999999999999999999887744 344566666677889999999999999
Q ss_pred Hhhhh
Q 006636 519 IKNKE 523 (637)
Q Consensus 519 ~~~~~ 523 (637)
+....
T Consensus 613 ll~~~ 617 (777)
T KOG1128|consen 613 LLDLR 617 (777)
T ss_pred HHHhh
Confidence 86553
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=6.3e-06 Score=83.97 Aligned_cols=219 Identities=10% Similarity=0.033 Sum_probs=176.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006636 246 PDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLI 325 (637)
Q Consensus 246 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 325 (637)
|-...-..+...+.+.|-...|..+|+++ ..|...|.+|+..|+..+|..+..+..+. +|++..|..+.
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 33344456778888999999999999876 34677889999999999999999888874 78999999998
Q ss_pred HHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 006636 326 KGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPE 405 (637)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 405 (637)
+......-++.|.++.+..... .-..+.....+.++++++.+.|+.-.+.. +.-..+|-.+..+..+.++++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhH
Confidence 8887777778888887765332 11122222234789999999999877764 446788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006636 406 KAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 406 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
.|.+.|....... +.+...||.+-.+|.+.|+-.+|...++++.+.+. -+...|...+....+.|.+++|++.+.++.
T Consensus 537 ~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 537 AAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 9999999988763 55678999999999999999999999999998873 366678888888899999999999998885
No 113
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.60 E-value=2.9e-05 Score=84.61 Aligned_cols=240 Identities=15% Similarity=0.126 Sum_probs=170.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006636 94 IFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEEN-GMD---PDSIFFNAVINAFSESGNMEEAMDTFWKMK 169 (637)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 169 (637)
=|+++... .+-....|-..+......++.+.|+++.++++.. ++. --..+|.++++.-..-|.-+...++|+++.
T Consensus 1446 Dferlvrs-sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1446 DFERLVRS-SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHHhc-CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 35555543 2335667777777777888888888888887754 111 123467777777777777778888888888
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--
Q 006636 170 ESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPD-- 247 (637)
Q Consensus 170 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-- 247 (637)
+.. -.-.+|..|...|.+.+..++|.++|+.|.+. +......|...+..+.+..+-++|..++.+.++. -|.
T Consensus 1525 qyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK--F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~e 1598 (1710)
T KOG1070|consen 1525 QYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK--FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQE 1598 (1710)
T ss_pred Hhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH--hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhh
Confidence 752 12346788888888888888888888888876 3456778888888888888888888888888765 233
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHH
Q 006636 248 -VVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNL--VIFNLL 324 (637)
Q Consensus 248 -~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l 324 (637)
.....-.+..-.+.|+.+.+..+|+..+...+ .-...|+..+++-.+.|+.+.++.+|+++...++.+.- ..|.-.
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence 22333445555678888888888888876543 34678888888888888888899999988888766643 356666
Q ss_pred HHHHHHcCCHhhHHHHH
Q 006636 325 IKGFVEIMDRDGVDEVL 341 (637)
Q Consensus 325 l~~~~~~~~~~~a~~~~ 341 (637)
+..--+.|+-..++.+=
T Consensus 1678 LeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1678 LEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred HHHHHhcCchhhHHHHH
Confidence 66555667755554443
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.56 E-value=1.9e-05 Score=70.96 Aligned_cols=158 Identities=15% Similarity=0.048 Sum_probs=121.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006636 357 STIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSD 436 (637)
Q Consensus 357 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 436 (637)
..+-..+...|+-+....+....... .+.|......++....+.|++..|...|++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 55666677778777777777765433 24566677778888888999999999999888775 78888999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006636 437 GSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 437 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~ 516 (637)
|++++|..-|.+..+.... ++..++.|...+.-.|+.+.|..++......+.. |...-..+.-+.+..|++++|+.+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 9999999999888885332 5567788888888889999999988887653322 5556667778888889999988876
Q ss_pred HH
Q 006636 517 SK 518 (637)
Q Consensus 517 ~~ 518 (637)
.+
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 54
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.56 E-value=9.7e-06 Score=72.83 Aligned_cols=165 Identities=16% Similarity=0.108 Sum_probs=129.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006636 106 SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIK 185 (637)
Q Consensus 106 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 185 (637)
|... ..+-..+...|+-+....+........ +.|......++....+.|++..|...|.+.....+ +|...|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHH
Confidence 4444 555677777788877777776654332 56677777788888899999999999999887653 58889999999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 006636 186 GYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEAD 265 (637)
Q Consensus 186 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 265 (637)
+|.+.|++++|..-|.+..+.. +.+....|.|.-.+.-.|+++.|..++......+ .-|..+-..|.......|+++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChH
Confidence 9999999999999998888753 4567788888888888999999999998887764 336677777888888899999
Q ss_pred HHHHHHHHHHh
Q 006636 266 QAEEVIVEMEH 276 (637)
Q Consensus 266 ~A~~~~~~~~~ 276 (637)
+|..+...-..
T Consensus 220 ~A~~i~~~e~~ 230 (257)
T COG5010 220 EAEDIAVQELL 230 (257)
T ss_pred HHHhhcccccc
Confidence 99888766543
No 116
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.54 E-value=1.9e-05 Score=71.26 Aligned_cols=118 Identities=12% Similarity=0.112 Sum_probs=63.9
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 006636 366 AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGW-CSDGS--MDRA 442 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~A 442 (637)
.++.+++...++...+.. +.+...|..|...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 344455555555544443 3455556666666666666666666666655553 44555555555542 44444 3566
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006636 443 IEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 443 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
.+++++..+.+.. +...+..+...+...|++++|+..|+++.+
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666554322 444555555555666666666666666544
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.53 E-value=1.5e-05 Score=75.05 Aligned_cols=187 Identities=10% Similarity=-0.068 Sum_probs=103.1
Q ss_pred CHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHH
Q 006636 317 NLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNP--DVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD--AHAYS 392 (637)
Q Consensus 317 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~ 392 (637)
....+..+...+...|+++.|...++.+....+.. ....+..+..++...|++++|...++.+.+...... ..++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 44455555566666666666666666665543211 013445555666666666666666666655421111 11344
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006636 393 ILAKGYVRE--------QEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETL 464 (637)
Q Consensus 393 ~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 464 (637)
.+...+.+. |++++|.+.|+++.+.. +.+...+..+...... .. .. ......+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~~----~~-------~~-------~~~~~~~ 172 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDYL----RN-------RL-------AGKELYV 172 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHHH----HH-------HH-------HHHHHHH
Confidence 444444433 45566666666665542 2222222211111000 00 00 0011245
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006636 465 MWGYSEARQPWRAEEILQIMKAF-GVHP-QKSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~m~~~-g~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
...+...|++++|+..++...+. .-.| ....+..++.++...|++++|..+++.+..+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56788889999999999888653 2123 2467888999999999999999988887554
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.52 E-value=3.7e-05 Score=69.43 Aligned_cols=149 Identities=13% Similarity=0.163 Sum_probs=116.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006636 360 MNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSM 439 (637)
Q Consensus 360 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 439 (637)
+..|...|+++......+.+.. |. ..+...++.+++...+++..+.+ +.|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 4467888888776544433221 10 01223677788888888888775 78999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--hhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 006636 440 DRAIEVFDKMCEHGVSPNLKTFETLMWGY-SEARQ--PWRAEEILQIMKAFGVHP-QKSTFLLLAEARRATGLTKEAKRI 515 (637)
Q Consensus 440 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~~~ 515 (637)
++|+..|++..+.... +...+..+..++ ...|+ .++|.+++++..+ ..| +...+..+...+.+.|++++|+..
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~--~dP~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALA--LDANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999986533 677888888874 67777 5999999999987 445 456888899999999999999999
Q ss_pred HHHHhhhhc
Q 006636 516 LSKIKNKER 524 (637)
Q Consensus 516 ~~~~~~~~~ 524 (637)
++++....+
T Consensus 167 ~~~aL~l~~ 175 (198)
T PRK10370 167 WQKVLDLNS 175 (198)
T ss_pred HHHHHhhCC
Confidence 999987755
No 119
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.51 E-value=9.8e-05 Score=79.94 Aligned_cols=278 Identities=9% Similarity=0.086 Sum_probs=135.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 006636 212 NLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDV-VTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIII 290 (637)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 290 (637)
+...|..|+..+...+++++|.++.+...+. .|+. ..|..+...+.+.++...+..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 4556666666666666666666666655443 2332 2233333344455544433333 122
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChh
Q 006636 291 SGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMD 370 (637)
Q Consensus 291 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 370 (637)
.......++.-...+...|... ..+...+..+..+|-+.|+.+++..+++++.+.. +.|+.+.|.+...|+.. +++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 2222222332222222333332 2233355556666666666666666666666655 34566666666666666 666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006636 371 KCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMC 450 (637)
Q Consensus 371 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (637)
+|++++.+.... |...+++..+.++|.++.... +.| ++.-..+.+++.
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d----------------~d~f~~i~~ki~ 214 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDD----------------FDFFLRIERKVL 214 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-ccc----------------chHHHHHHHHHH
Confidence 666666655442 445556666666666666542 122 222223333333
Q ss_pred HC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccc
Q 006636 451 EH-GVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNKERTNEM 528 (637)
Q Consensus 451 ~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~ 528 (637)
.. |..--..++..+-..|....++++++.+++.+.+ +.|+ ......+++.|. +++.+ ...++.......-.+.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~--~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~~~ 289 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE--HDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIGNN 289 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh--cCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHhccccC
Confidence 22 2222334555555666667777777777777766 3333 334445555544 22211 2222222111000112
Q ss_pred cccccchHHHHHHHHhhhccC
Q 006636 529 EAEEDIPVESLERLYHKEATT 549 (637)
Q Consensus 529 ~~~~~~a~~~~e~~~~~~~~~ 549 (637)
.+++..+..-.|+.+..++.+
T Consensus 290 ~~~~~~~i~~fek~i~f~~G~ 310 (906)
T PRK14720 290 RKPVKDCIADFEKNIVFDTGN 310 (906)
T ss_pred CccHHHHHHHHHHHeeecCCC
Confidence 244556666667776655544
No 120
>PF12854 PPR_1: PPR repeat
Probab=98.50 E-value=1.8e-07 Score=56.64 Aligned_cols=31 Identities=48% Similarity=0.766 Sum_probs=13.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006636 173 LTPTTSTYNTLIKGYGIAGKPEESVKLLDLM 203 (637)
Q Consensus 173 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 203 (637)
+.||..+|++||++|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444443
No 121
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.49 E-value=3.7e-05 Score=72.32 Aligned_cols=60 Identities=17% Similarity=0.100 Sum_probs=39.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006636 253 TIATAYAQNGEADQAEEVIVEMEHNGV--QPNGRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 253 ~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
.+...+.+.|++++|...+........ +.....+..+..++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 355566777777777777777665422 112456667777777777777777777766543
No 122
>PF12854 PPR_1: PPR repeat
Probab=98.49 E-value=2.2e-07 Score=56.26 Aligned_cols=32 Identities=47% Similarity=1.027 Sum_probs=18.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006636 418 GFHPNVVIFTTIISGWCSDGSMDRAIEVFDKM 449 (637)
Q Consensus 418 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 449 (637)
|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 123
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.46 E-value=1.6e-05 Score=67.83 Aligned_cols=94 Identities=10% Similarity=-0.036 Sum_probs=56.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006636 391 YSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE 470 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 470 (637)
+..+...+...|++++|...|+...... +.+...|..+..++...|++++|+..|+++.+... .+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence 3344555566666666666666666553 44556666666666666666666666666665432 245556666666666
Q ss_pred cCChhHHHHHHHHHHH
Q 006636 471 ARQPWRAEEILQIMKA 486 (637)
Q Consensus 471 ~g~~~~A~~~~~~m~~ 486 (637)
.|+.++|+..|+...+
T Consensus 105 ~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 105 MGEPGLAREAFQTAIK 120 (144)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666666655
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=0.00025 Score=63.91 Aligned_cols=108 Identities=11% Similarity=0.130 Sum_probs=49.9
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006636 364 STAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVR----EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSM 439 (637)
Q Consensus 364 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 439 (637)
.+..+++-|.+.++.|..- .+..+.+-|..++.+ .+.+.+|.-+|++|.+. .+|+..+.+....++...|++
T Consensus 148 lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCH
Confidence 3444455555555555432 233344444444432 23344455555555443 245555555555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 006636 440 DRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWR 476 (637)
Q Consensus 440 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 476 (637)
++|..++++++..... ++.+...++..-.+.|+..+
T Consensus 224 eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 224 EEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAE 259 (299)
T ss_pred HHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChH
Confidence 5555555555544322 44444444444444444433
No 125
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.45 E-value=0.0022 Score=63.69 Aligned_cols=415 Identities=11% Similarity=0.079 Sum_probs=249.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006636 104 KPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTL 183 (637)
Q Consensus 104 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 183 (637)
+-|..+|+.||+-+..+ ..+++++.++++... ++.....|..-|..-.+..+++...++|.+....- .+...|..-
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 45899999999987666 899999999999865 46677889999999999999999999999987653 356677766
Q ss_pred HHHHHh-cCChHH----HHHHHHHHHhcCCC-CCCHHHHHHHHHHH---------HhcCCHHHHHHHHHHHHHCCCCCCH
Q 006636 184 IKGYGI-AGKPEE----SVKLLDLMSREGNV-KPNLRTYNVLVRAW---------CNEKNITEAWNVMHKMAASGMKPDV 248 (637)
Q Consensus 184 i~~~~~-~g~~~~----A~~~~~~m~~~~~~-~~~~~~~~~li~~~---------~~~g~~~~A~~~~~~~~~~g~~~~~ 248 (637)
++---+ .|+... ..+.|+-....-+. ..+...|+..+... ..+.+.+...++++++...-+..=.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 653322 233322 33344444333222 12334566555433 3455677888888888754222112
Q ss_pred HHHH------HHHHHH-------HHcCCHHHHHHHHHHHHh--CCCCCChhh---------------HHHHHHHHHhcC-
Q 006636 249 VTYN------TIATAY-------AQNGEADQAEEVIVEMEH--NGVQPNGRT---------------CGIIISGYCKEG- 297 (637)
Q Consensus 249 ~~~~------~li~~~-------~~~g~~~~A~~~~~~~~~--~~~~~~~~~---------------~~~li~~~~~~g- 297 (637)
..|+ .=|+.. -+...+-.|.++++++.. .|...+..+ |-.+|.-=-.++
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 2222 111111 123346677777777643 232222211 322222111111
Q ss_pred -----CH--HHHHHHHHHHH-HCCCCCCHHHH-HH----HHHHHHHcCC-------HhhHHHHHHHHhhCCCCCCHHHHH
Q 006636 298 -----KI--KEALRFARTMK-EYGVHPNLVIF-NL----LIKGFVEIMD-------RDGVDEVLALMKEFRVNPDVITYS 357 (637)
Q Consensus 298 -----~~--~~A~~~~~~~~-~~~~~~~~~~~-~~----ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~ 357 (637)
.. ....-.+++.. -.+..|++.-. .. .-+.+...|+ .+++..+++..+..-...+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 01111222221 12222322111 00 1112223333 344555666554433233444444
Q ss_pred HHHHHHHHcC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 006636 358 TIMNAWSTAG---FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHP-NVVIFTTIISGW 433 (637)
Q Consensus 358 ~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~ 433 (637)
.+.+--...- ..+....++.++...-...-.-+|..+++.-.+..-+..|+.+|.++.+.+..+ ++.+.++++.-|
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 4433221111 244555566666543222234567777887788888999999999999987666 667777777755
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHH
Q 006636 434 CSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ--KSTFLLLAEARRATGLTKE 511 (637)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~e 511 (637)
| .++...|.++|+--+.. ..-++.--...+.-+.+.++-..+..+|++....++.|+ .++|..+++-=..-|+++.
T Consensus 413 c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred h-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 5 57889999999987764 223444556778888999999999999999987777776 4589999999999999999
Q ss_pred HHHHHHHHhhhhc
Q 006636 512 AKRILSKIKNKER 524 (637)
Q Consensus 512 A~~~~~~~~~~~~ 524 (637)
+.++-+++....+
T Consensus 491 i~~lekR~~~af~ 503 (656)
T KOG1914|consen 491 ILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHHHhcc
Confidence 9999888865544
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.45 E-value=8.9e-05 Score=80.26 Aligned_cols=240 Identities=13% Similarity=0.101 Sum_probs=153.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHH
Q 006636 139 DPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNV 218 (637)
Q Consensus 139 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 218 (637)
+.+...+..|+..|...+++++|.++.+...+..+. ....|..+...+.+.++.+.+..+ .+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~--------------- 89 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NL--------------- 89 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hh---------------
Confidence 345678899999999999999999999977765322 333444444567777776665554 22
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 006636 219 LVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGK 298 (637)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 298 (637)
+.......++.-...+...|... .-+...+..+..+|-+.|+.++|..+++++++.. +.|..+.|.+...|... +
T Consensus 90 -l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 90 -IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred -hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 22223333343333344444443 2345577778899999999999999999998877 35788889999999888 9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 006636 299 IKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDD 378 (637)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 378 (637)
+++|+.++.+.... +...+++..+.+++..+....+. +...+..+. +.
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~----------------~k 212 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIE----------------RK 212 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHH----------------HH
Confidence 99999988887643 55566777778878777765421 222222222 22
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006636 379 MGKA-GIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWC 434 (637)
Q Consensus 379 ~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 434 (637)
+... +..--..++-.+-..|-+.++++++..+++.+.+.. +.|.....-++.+|.
T Consensus 213 i~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 213 VLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 2211 122234445555566666777777777777777654 445555566666554
No 127
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.36 E-value=2.5e-05 Score=66.65 Aligned_cols=95 Identities=6% Similarity=-0.121 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006636 110 YTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI 189 (637)
Q Consensus 110 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 189 (637)
+..+..++...|++++|...|+.+.... +.+...+..+..++...|++++|...|++..+.++. +...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 3344555566666666666666666554 445566666666666666666666666666655432 55566666666666
Q ss_pred cCChHHHHHHHHHHHhc
Q 006636 190 AGKPEESVKLLDLMSRE 206 (637)
Q Consensus 190 ~g~~~~A~~~~~~m~~~ 206 (637)
.|++++|+..|+.....
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666666554
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.35 E-value=0.00031 Score=75.39 Aligned_cols=182 Identities=12% Similarity=0.138 Sum_probs=132.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHH
Q 006636 138 MDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYN 217 (637)
Q Consensus 138 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 217 (637)
.+.++..+-.|.....+.|..++|..+++...+..+. +...+..++..+.+.+++++|+..+++..... |.+....+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHH
Confidence 4666888888889999999999999999999887543 56678888889999999999999999988865 55677788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 006636 218 VLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEG 297 (637)
Q Consensus 218 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 297 (637)
.+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+..- +....|+.++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~-~~~~~~~~~~~------ 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG-DGARKLTRRLV------ 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-cchHHHHHHHH------
Confidence 88888899999999999999998743 33578888888999999999999999988876532 33444444332
Q ss_pred CHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHH
Q 006636 298 KIKEALRFARTMKEYG----VHPNLVIFNLLIKGFVE 330 (637)
Q Consensus 298 ~~~~A~~~~~~~~~~~----~~~~~~~~~~ll~~~~~ 330 (637)
++..-..+++++.-.+ .+....+...++.-|.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 231 DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence 3333445555554332 22233344444444443
No 129
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.00051 Score=61.98 Aligned_cols=230 Identities=13% Similarity=0.072 Sum_probs=102.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006636 79 MNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNM 158 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 158 (637)
++.+.-.|++..++..-..... .+.++..-..+-++|...|.+.....-. . .|-.|.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~--~~~~~e~d~y~~raylAlg~~~~~~~eI---~-~~~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSS--SKTDVELDVYMYRAYLALGQYQIVISEI---K-EGKATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcc--ccchhHHHHHHHHHHHHccccccccccc---c-cccCChHHHHHHHHHHhhCcchh
Confidence 4555556777766654444332 1234444455566666666654433221 1 11122222222222222222222
Q ss_pred HHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006636 159 EEA-MDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMH 237 (637)
Q Consensus 159 ~~A-~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 237 (637)
+.- -.+.+.+.......+......-...|+..|++++|++..... .+......=+..+.+..+++-|.+.++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-------~~lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-------ENLEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 223333333322222222222334455666666666655541 123333333344445555666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006636 238 KMAASGMKPDVVTYNTIATAYAQ----NGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYG 313 (637)
Q Consensus 238 ~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 313 (637)
+|.+.. +..|.+.|..++.+ .+.+..|.-+|++|.++ .+|+..+.+-...++...|++++|..+++......
T Consensus 162 ~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 162 KMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 665432 34444444444433 23455555555555432 23455555555555555555555555555555443
Q ss_pred CCCCHHHHHHHHH
Q 006636 314 VHPNLVIFNLLIK 326 (637)
Q Consensus 314 ~~~~~~~~~~ll~ 326 (637)
..++.+...++.
T Consensus 238 -~~dpetL~Nliv 249 (299)
T KOG3081|consen 238 -AKDPETLANLIV 249 (299)
T ss_pred -CCCHHHHHHHHH
Confidence 233334333333
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.33 E-value=0.00013 Score=78.33 Aligned_cols=148 Identities=10% Similarity=0.034 Sum_probs=125.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006636 102 GHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYN 181 (637)
Q Consensus 102 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 181 (637)
.+..++..+-.|..+..+.|.+++|..+++.+.+.. |.+......+...+.+.+++++|+..+++.....+. +.....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHH
Confidence 356678899999999999999999999999999864 555677888899999999999999999999988654 677888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006636 182 TLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTI 254 (637)
Q Consensus 182 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 254 (637)
.+..++.+.|++++|..+|+++...+ +.+..++..+...+-..|+.++|...|++..+.- .+....|+..
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 89999999999999999999999854 4558999999999999999999999999998752 3344554443
No 131
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.32 E-value=3.3e-05 Score=65.46 Aligned_cols=96 Identities=10% Similarity=0.038 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006636 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGY 468 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 468 (637)
.....+...+.+.|++++|...|+.+...+ +.+...|..+...+...|++++|...+++..+.+ +.+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 334444455555555555555555554442 3344555555555555555555555555554432 12344444455555
Q ss_pred HhcCChhHHHHHHHHHHH
Q 006636 469 SEARQPWRAEEILQIMKA 486 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~ 486 (637)
...|++++|...|+...+
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 96 LALGEPESALKALDLAIE 113 (135)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555544
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.27 E-value=5.5e-05 Score=64.06 Aligned_cols=120 Identities=12% Similarity=0.051 Sum_probs=91.9
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 006636 340 VLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGF 419 (637)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 419 (637)
.++......+ .+......+...+...|++++|...++.+...+ +.+...+..+...|.+.|++++|..++++..+.+
T Consensus 5 ~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLDS-EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCCh-hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 3444444432 244556667777888999999999999888764 4577888888999999999999999999988775
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006636 420 HPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETL 464 (637)
Q Consensus 420 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 464 (637)
+.+...+..+...|...|++++|...|++..+. .|+...+..+
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 124 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEYSEL 124 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHHHH
Confidence 667788888888999999999999999998885 3555544433
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.22 E-value=0.00068 Score=66.66 Aligned_cols=239 Identities=18% Similarity=0.155 Sum_probs=143.7
Q ss_pred HHHHHHcCC-hhHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHH
Q 006636 79 MNSLIERGK-PQEAQAIFNNLIE---GGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENG--MDPDSIFFNAVINAF 152 (637)
Q Consensus 79 ~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~ 152 (637)
+..+.+.|. +....+.|+++.. .+-.|..+..+.=+ -..+...+...-+.+...+ -.|+...+...+.+.
T Consensus 209 i~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~THPl----p~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~ 284 (484)
T COG4783 209 ITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTHPL----PEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAK 284 (484)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcCCC----chhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHH
Confidence 455666774 5555678888773 33344333211100 1112222232223332211 134555555555544
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006636 153 SESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEA 232 (637)
Q Consensus 153 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A 232 (637)
.....-..+-..+.+..+. . -...+....-.+...|++++|+..++.+.... |.|...+......+.+.++..+|
T Consensus 285 ~~~~~~~~~~~~~~~~~~~--~-~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A 359 (484)
T COG4783 285 YEALPNQQAADLLAKRSKR--G-GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEA 359 (484)
T ss_pred hccccccchHHHHHHHhCc--c-chHHHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHH
Confidence 3333323333333222221 1 22233333344557788888888888887763 56677777777888888888888
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006636 233 WNVMHKMAASGMKPD-VVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 233 ~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
.+.++++... .|+ ...+..+..++.+.|++.+|+.+++...... +.|...|..|..+|...|+..++.....+..
T Consensus 360 ~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~- 435 (484)
T COG4783 360 IERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGY- 435 (484)
T ss_pred HHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH-
Confidence 8888888876 344 5666677888888888888888888877654 3577888888888888888888877776664
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhC
Q 006636 312 YGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEF 347 (637)
Q Consensus 312 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 347 (637)
...|+++.|...+....+.
T Consensus 436 -----------------~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 436 -----------------ALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred -----------------HhCCCHHHHHHHHHHHHHh
Confidence 3447777777777666553
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=0.0027 Score=57.03 Aligned_cols=163 Identities=13% Similarity=0.074 Sum_probs=103.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 006636 286 CGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWST 365 (637)
Q Consensus 286 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 365 (637)
+..++-+....|+.+.|...++++...- +.+..+-..-...+-..|.+++|.++++.+.+.+ +.|..++-.-+.+.-.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 3444455556677777777777765542 2222222222222445577777777777777765 3466666655556666
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHH
Q 006636 366 AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDG---SMDRA 442 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A 442 (637)
.|+--+|++-+....+. +..|...|.-+...|...|++++|.-.+++++-.. |-++..+..+...+...| +.+.|
T Consensus 133 ~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 67766777776666654 45678888888888888888888888888877653 455666666666554444 45567
Q ss_pred HHHHHHHHHC
Q 006636 443 IEVFDKMCEH 452 (637)
Q Consensus 443 ~~~~~~m~~~ 452 (637)
.++|.+..+.
T Consensus 211 rkyy~~alkl 220 (289)
T KOG3060|consen 211 RKYYERALKL 220 (289)
T ss_pred HHHHHHHHHh
Confidence 7777777764
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.0023 Score=57.40 Aligned_cols=118 Identities=11% Similarity=0.119 Sum_probs=50.2
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006636 190 AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEE 269 (637)
Q Consensus 190 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 269 (637)
.|.+++|.++++.+.+.+ |.|.+++---+...-..|+--+|++-+....+. +..|...|.-+...|...|++++|.-
T Consensus 99 ~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred hhchhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 444444444444444433 333444433333333344444444444444333 23344445555555555555555554
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHH
Q 006636 270 VIVEMEHNGVQPNGRTCGIIISGYCKEG---KIKEALRFARTMKE 311 (637)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~ 311 (637)
.+++++-..+ .+...+..+.+.+.-.| +++.|.++|.+..+
T Consensus 176 ClEE~ll~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 176 CLEELLLIQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4444443321 22333333333333222 23444555555444
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.17 E-value=0.00088 Score=65.89 Aligned_cols=117 Identities=16% Similarity=0.079 Sum_probs=53.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006636 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAW 233 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 233 (637)
..|+++.|+..++.+....+ -|+..+......+.+.|+.++|.+.++++.... |.....+-.+..++.+.|++.+|+
T Consensus 318 ~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHH
Confidence 34444455555544444321 133344444444455555555555555544432 111334444444455555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006636 234 NVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEM 274 (637)
Q Consensus 234 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 274 (637)
.+++...... +-|+..|..|..+|...|+..++.....+.
T Consensus 395 ~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 395 RILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 5554444332 334445555555555555555444444444
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.11 E-value=0.00023 Score=60.98 Aligned_cols=126 Identities=18% Similarity=0.114 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHH
Q 006636 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNV---VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNL--KTFETL 464 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l 464 (637)
.|..++..+ ..++...+...++.+.+.. +.+. ...-.+...+...|++++|...|+...+....|+. .....|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 4777777777777777753 3331 22333456677788888888888888876533322 244556
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006636 465 MWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
...+...|++++|+..++.... -......+...++++.+.|++++|+..+++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7777888888888888765432 1223445667788888888888888887764
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.03 E-value=0.00023 Score=70.63 Aligned_cols=126 Identities=17% Similarity=0.253 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 006636 143 IFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRA 222 (637)
Q Consensus 143 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 222 (637)
.....|+..+...++++.|+.+|+++.+.. |+ ....+++.+...++..+|++++++..... +.+...+......
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 344455555666677777777777777753 33 34456677777777777777777777653 4466666666677
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006636 223 WCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEME 275 (637)
Q Consensus 223 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 275 (637)
+.+.++++.|+.+.+++.... +.+-.+|..|..+|.+.|+++.|+..++.+.
T Consensus 244 Ll~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777777777652 2234477777777777777777777666553
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.95 E-value=0.00064 Score=58.18 Aligned_cols=21 Identities=29% Similarity=0.273 Sum_probs=8.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 006636 150 NAFSESGNMEEAMDTFWKMKE 170 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~ 170 (637)
..+...|++++|...|+.+..
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHh
Confidence 333344444444444444443
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.95 E-value=0.00033 Score=69.50 Aligned_cols=126 Identities=12% Similarity=0.134 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006636 109 TYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYG 188 (637)
Q Consensus 109 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 188 (637)
....++..+...++++.|..+++++.+.. |+. ...++..+...++-.+|.+++.+..+..+ .+......-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 34455566666677788888888777653 443 33466667677777777777777776533 25666666667777
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006636 189 IAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAA 241 (637)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 241 (637)
+.++++.|+.+.+++.... |-+..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 246 ~k~~~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 7888888888888877753 34456788888888888888888877777764
No 141
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.91 E-value=2.1e-05 Score=48.30 Aligned_cols=33 Identities=36% Similarity=0.900 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006636 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPN 457 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 457 (637)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
No 142
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.85 E-value=2.7e-05 Score=47.85 Aligned_cols=33 Identities=27% Similarity=0.622 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 006636 74 SMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPS 106 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 106 (637)
+||.++++|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888777776
No 143
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.84 E-value=0.064 Score=57.12 Aligned_cols=201 Identities=9% Similarity=0.052 Sum_probs=124.3
Q ss_pred HHHHHHHH--HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006636 75 MTKLMNSL--IERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAF 152 (637)
Q Consensus 75 ~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 152 (637)
|..++.++ .+.|+.++|..+++.....+. .|..|...+-.+|...++.++|..+|++..+. .|+......+..+|
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmay 120 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAY 120 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHH
Confidence 33444444 578899999988887765432 27778888888888999999999999988875 46677778888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 006636 153 SESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGK----------PEESVKLLDLMSREGNVKPNLRTYNVLVRA 222 (637)
Q Consensus 153 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 222 (637)
.+.+++.+-.++--++-+. ++-++..+=++++.+.+.-. ..-|.+.++.+.+.++.-.+..-...-...
T Consensus 121 vR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~i 199 (932)
T KOG2053|consen 121 VREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLI 199 (932)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHH
Confidence 8888776544443333332 22244444455555544321 234556666666554211122222223344
Q ss_pred HHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 006636 223 WCNEKNITEAWNVMH-KMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGV 279 (637)
Q Consensus 223 ~~~~g~~~~A~~~~~-~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 279 (637)
....|++++|+.++. ...+.-...+...-+.-+..+...+++.+..++-.++...|.
T Consensus 200 L~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 200 LELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 456778888888883 333332333444445566677777788777777777776654
No 144
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.81 E-value=0.00043 Score=53.88 Aligned_cols=89 Identities=19% Similarity=0.205 Sum_probs=38.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006636 394 LAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQ 473 (637)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 473 (637)
++..+...|++++|..+++++.+.. +.+...+..+...+...|++++|.+.|++...... .+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHh
Confidence 3344444444555555554444432 22233444444444444445555554444444321 122344444444444444
Q ss_pred hhHHHHHHHHH
Q 006636 474 PWRAEEILQIM 484 (637)
Q Consensus 474 ~~~A~~~~~~m 484 (637)
+++|...++..
T Consensus 84 ~~~a~~~~~~~ 94 (100)
T cd00189 84 YEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.80 E-value=3.6e-05 Score=46.89 Aligned_cols=32 Identities=31% Similarity=0.679 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006636 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVSP 456 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 456 (637)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34444444444444444444444444444433
No 146
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.80 E-value=0.061 Score=55.45 Aligned_cols=205 Identities=9% Similarity=0.040 Sum_probs=121.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH----------HHhcCCHHHHHHHHHHHHHCCC
Q 006636 104 KPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA----------FSESGNMEEAMDTFWKMKESGL 173 (637)
Q Consensus 104 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~----------~~~~g~~~~A~~~~~~m~~~~~ 173 (637)
.|.+..|..+.......-.++.|...|-+... -+.......|-.. -+--|++++|.++|-+|-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 67888898888776666677777766655432 1222111111111 112478888888887776542
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006636 174 TPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNT 253 (637)
Q Consensus 174 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 253 (637)
..|..+.+.|++-...++++.--....-..-...|+.+...++....+++|.+.+..-.. . ..
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~ 827 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T---EN 827 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h---Hh
Confidence 235666677777666666543111100001135678888888888888888877765431 1 12
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006636 254 IATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMD 333 (637)
Q Consensus 254 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 333 (637)
.+.++.+...+++-+.+-..+ +.+....-.+.+++...|.-++|.+.|-+-. .| ...+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHH
Confidence 556666666666555444333 3456667778888888888888877764432 12 234556777777
Q ss_pred HhhHHHHHHH
Q 006636 334 RDGVDEVLAL 343 (637)
Q Consensus 334 ~~~a~~~~~~ 343 (637)
+.+|.++-+.
T Consensus 894 W~~avelaq~ 903 (1189)
T KOG2041|consen 894 WGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHh
Confidence 7777776554
No 147
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.77 E-value=4.9e-05 Score=46.29 Aligned_cols=33 Identities=27% Similarity=0.569 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 006636 73 RSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKP 105 (637)
Q Consensus 73 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 105 (637)
.+|+.++.++++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
No 148
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.74 E-value=0.092 Score=56.00 Aligned_cols=225 Identities=12% Similarity=0.122 Sum_probs=151.7
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006636 81 SLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAAL--TIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNM 158 (637)
Q Consensus 81 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 158 (637)
.....+++..|++....+.+. .|+.. |..++.++ .+.|+.++|..+++.....+ ..|..+...+-..|...+..
T Consensus 18 d~ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhh
Confidence 345678999999999998875 45543 34444444 68899999999888877665 44888999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-C---------C
Q 006636 159 EEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNE-K---------N 228 (637)
Q Consensus 159 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-g---------~ 228 (637)
++|..+|++..+.. |+......+..+|++.+.+.+-.+.--++.+. .|.+...+=++++.+.+. . -
T Consensus 94 d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilqs~~~~~~~~~~i~ 169 (932)
T KOG2053|consen 94 DEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQSIFSENELLDPIL 169 (932)
T ss_pred hHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHhccCCcccccchh
Confidence 99999999998863 56777777888888888776644444444332 234444444444444321 1 1
Q ss_pred HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006636 229 ITEAWNVMHKMAASG-MKPDVVTYNTIATAYAQNGEADQAEEVIVE-MEHNGVQPNGRTCGIIISGYCKEGKIKEALRFA 306 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 306 (637)
..-|.+.++.+.+.+ ---+..-...-...+...|++++|.+++.. ..+.-..-+...-+.-++.+...+++.+-.++-
T Consensus 170 l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~ 249 (932)
T KOG2053|consen 170 LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELS 249 (932)
T ss_pred HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHH
Confidence 234566677776543 111221122223345678899999999843 333323334445556778888999999999999
Q ss_pred HHHHHCC
Q 006636 307 RTMKEYG 313 (637)
Q Consensus 307 ~~~~~~~ 313 (637)
.++...|
T Consensus 250 ~~Ll~k~ 256 (932)
T KOG2053|consen 250 SRLLEKG 256 (932)
T ss_pred HHHHHhC
Confidence 9988876
No 149
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.74 E-value=0.0023 Score=53.81 Aligned_cols=92 Identities=10% Similarity=-0.037 Sum_probs=59.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006636 392 SILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEA 471 (637)
Q Consensus 392 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 471 (637)
-.+..-+...|++++|.++|+-+.... +-+..-|-.|..++-..|++++|+..|..+....+ -|+..+-.+..++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 334444556677777777777666553 44556666666666677777777777777666543 2556666666667777
Q ss_pred CChhHHHHHHHHHH
Q 006636 472 RQPWRAEEILQIMK 485 (637)
Q Consensus 472 g~~~~A~~~~~~m~ 485 (637)
|+.+.|.+.|+...
T Consensus 117 G~~~~A~~aF~~Ai 130 (157)
T PRK15363 117 DNVCYAIKALKAVV 130 (157)
T ss_pred CCHHHHHHHHHHHH
Confidence 77777777666654
No 150
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.74 E-value=0.00051 Score=63.33 Aligned_cols=95 Identities=14% Similarity=0.239 Sum_probs=62.3
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhH
Q 006636 398 YVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK-TFETLMWGYSEARQPWR 476 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~ 476 (637)
..+.+++++|+..|.+.++.. +.|.+.|..-..+|.+.|.++.|++-.+..+. +.|... +|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHH
Confidence 456667777777777776663 55666666666677777777777777666666 334433 67777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHH
Q 006636 477 AEEILQIMKAFGVHPQKSTFL 497 (637)
Q Consensus 477 A~~~~~~m~~~g~~p~~~~~~ 497 (637)
|++.|++..+ +.|+.++|.
T Consensus 168 A~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHH
Confidence 7777766655 666666554
No 151
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.73 E-value=0.00036 Score=64.26 Aligned_cols=111 Identities=15% Similarity=0.103 Sum_probs=89.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHH
Q 006636 432 GWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK-STFLLLAEARRATGLTK 510 (637)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~ 510 (637)
-..+.+++++|+..|.++++.... |.+-|..-..+|.+.|..+.|++-.+..+. +.|.. ..|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHH
Confidence 356889999999999999996533 677788889999999999999999888877 66664 48999999999999999
Q ss_pred HHHHHHHHHhhhhccccccccccchHHHHHHHHhhhcc
Q 006636 511 EAKRILSKIKNKERTNEMEAEEDIPVESLERLYHKEAT 548 (637)
Q Consensus 511 eA~~~~~~~~~~~~~~~~~~~~~~a~~~~e~~~~~~~~ 548 (637)
+|++.|++..+..|++. ........++..+..+++
T Consensus 167 ~A~~aykKaLeldP~Ne---~~K~nL~~Ae~~l~e~~~ 201 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNE---SYKSNLKIAEQKLNEPKS 201 (304)
T ss_pred HHHHHHHhhhccCCCcH---HHHHHHHHHHHHhcCCCc
Confidence 99999999999988764 233344455666655553
No 152
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.71 E-value=0.0012 Score=65.92 Aligned_cols=88 Identities=9% Similarity=-0.029 Sum_probs=47.0
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006636 362 AWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDR 441 (637)
Q Consensus 362 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 441 (637)
.+...|+++.|+..|+++++.. +.+...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 3344555555555555555543 2344555555555555555555555555555543 3344555555555555555555
Q ss_pred HHHHHHHHHH
Q 006636 442 AIEVFDKMCE 451 (637)
Q Consensus 442 A~~~~~~m~~ 451 (637)
|+..|++.++
T Consensus 89 A~~~~~~al~ 98 (356)
T PLN03088 89 AKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHH
Confidence 5555555555
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.71 E-value=0.00083 Score=52.23 Aligned_cols=95 Identities=21% Similarity=0.239 Sum_probs=69.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006636 356 YSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS 435 (637)
Q Consensus 356 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 435 (637)
+..+...+...|++++|...++.+.+.. +.+..++..+...+...+++++|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3445566677788888888888777653 3344667777777888888888888888877764 4455677777788888
Q ss_pred cCCHHHHHHHHHHHHHC
Q 006636 436 DGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 436 ~g~~~~A~~~~~~m~~~ 452 (637)
.|++++|...+++..+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 88888888888777653
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.70 E-value=0.0011 Score=54.52 Aligned_cols=95 Identities=12% Similarity=0.036 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 006636 391 YSILAKGYVREQEPEKAEELLMTMIESGFHPN---VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVS--PNLKTFETLM 465 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~l~ 465 (637)
+..++..+.+.|++++|.+.|.++.+.. +.+ ...+..+..++...|++++|...|+++...... .....+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3344444455555555555555554431 111 223334444455555555555555554432111 0122344444
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 006636 466 WGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 466 ~~~~~~g~~~~A~~~~~~m~~ 486 (637)
.++.+.|+.++|...++++.+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHH
Confidence 444444555555555444443
No 155
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.66 E-value=0.0017 Score=57.28 Aligned_cols=136 Identities=15% Similarity=0.133 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006636 386 PDAHAYSILAKGYVR-----EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKT 460 (637)
Q Consensus 386 ~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 460 (637)
.+..+|..+++.|.+ .|..+=....++.|.+.|+..|..+|+.|+..+=+ |.+- -..+|+.+--
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~--------- 113 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM--------- 113 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc---------
Confidence 355555555555543 24445455555555555555555555555554432 2111 0111111110
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-------hcc----cccc
Q 006636 461 FETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNK-------ERT----NEME 529 (637)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~-------~~~----~~~~ 529 (637)
- .-.+.+-|++++++|..+|+-||.+++..+++++++.+. +.+-+.+|.-. +|. ..+.
T Consensus 114 ------h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~---p~~K~~rmmYWmpkfk~~nP~plp~~lP~ 182 (228)
T PF06239_consen 114 ------H--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH---PMKKYRRMMYWMPKFKNINPWPLPRPLPQ 182 (228)
T ss_pred ------c--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH---HHHHHHHHHHHHHHHhccCCCCCCcCCCC
Confidence 0 112344689999999999999999999999999977764 44444444322 111 1334
Q ss_pred ccccchHHHHHHHH
Q 006636 530 AEEDIPVESLERLY 543 (637)
Q Consensus 530 ~~~~~a~~~~e~~~ 543 (637)
...++|..+++++-
T Consensus 183 Dp~eLA~lal~rm~ 196 (228)
T PF06239_consen 183 DPLELAKLALRRMS 196 (228)
T ss_pred CHHHHHHHHHHHhc
Confidence 56678888888874
No 156
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.59 E-value=0.0045 Score=54.74 Aligned_cols=83 Identities=17% Similarity=0.163 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006636 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPN--VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWG 467 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 467 (637)
.+..+...|...|++++|...|++..+....+. ...+..+...+...|++++|+..++++.+.... +...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 344444555555555555555555544321111 234555555555555555555555555543211 23344444444
Q ss_pred HHhcCC
Q 006636 468 YSEARQ 473 (637)
Q Consensus 468 ~~~~g~ 473 (637)
+...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 444444
No 157
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.59 E-value=0.0022 Score=63.96 Aligned_cols=95 Identities=15% Similarity=0.078 Sum_probs=57.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 006636 396 KGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPW 475 (637)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 475 (637)
..+...|++++|+..|+++++.. +.+...|..+..+|...|++++|+..++++++... .+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHH
Confidence 44455666666666666666653 44556666666666666666666666666666432 14445666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHH
Q 006636 476 RAEEILQIMKAFGVHPQKS 494 (637)
Q Consensus 476 ~A~~~~~~m~~~g~~p~~~ 494 (637)
+|+..|++..+ +.|+..
T Consensus 88 eA~~~~~~al~--l~P~~~ 104 (356)
T PLN03088 88 TAKAALEKGAS--LAPGDS 104 (356)
T ss_pred HHHHHHHHHHH--hCCCCH
Confidence 66666666655 344433
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.58 E-value=0.0035 Score=51.43 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=6.4
Q ss_pred HHHcCChhHHHHHHHHH
Q 006636 82 LIERGKPQEAQAIFNNL 98 (637)
Q Consensus 82 ~~~~g~~~~A~~~~~~~ 98 (637)
+.+.|++++|.+.|+.+
T Consensus 12 ~~~~~~~~~A~~~~~~~ 28 (119)
T TIGR02795 12 VLKAGDYADAIQAFQAF 28 (119)
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 33333333333333333
No 159
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.58 E-value=0.0013 Score=65.59 Aligned_cols=124 Identities=14% Similarity=0.134 Sum_probs=87.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 006636 313 GVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEF--RVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHA 390 (637)
Q Consensus 313 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 390 (637)
+.+.+......+++.+....+.+.+..++...... ....-..|..+++..|...|..+.+..++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556667777777777777777777777766554 1222234455788888888888888888888777888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006636 391 YSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSD 436 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 436 (637)
++.|++.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888777666566666666555555544
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.58 E-value=0.005 Score=54.48 Aligned_cols=92 Identities=14% Similarity=0.088 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006636 353 VITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD--AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTII 430 (637)
Q Consensus 353 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 430 (637)
...+..+...+...|++++|...|++..+....+. ...+..+...|.+.|++++|...+.+..+.. +.+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 34566666677777888888888887775432221 3567777888888888888888888877753 44566677777
Q ss_pred HHHHhcCCHHHHHHH
Q 006636 431 SGWCSDGSMDRAIEV 445 (637)
Q Consensus 431 ~~~~~~g~~~~A~~~ 445 (637)
..+...|+...+..-
T Consensus 114 ~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 114 VIYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHHcCChHhHhhC
Confidence 777777765444433
No 161
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.57 E-value=0.0051 Score=64.15 Aligned_cols=142 Identities=11% Similarity=0.072 Sum_probs=75.4
Q ss_pred CCCCHHHHHHHHHHHHHcC-----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHH
Q 006636 349 VNPDVITYSTIMNAWSTAG-----FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVRE--------QEPEKAEELLMTMI 415 (637)
Q Consensus 349 ~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~ 415 (637)
.+.+...|...+.+..... ..+.|..+|++.++.. +.....+..+..+|... .++..+.+...+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3456666666666543322 2556777777766653 12234444433333221 11223333333332
Q ss_pred HC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 006636 416 ES-GFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS 494 (637)
Q Consensus 416 ~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 494 (637)
.. ..+.+...|..+...+...|++++|...++++.+.+ |+...|..+...+...|+.++|.+.+++... +.|...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCc
Confidence 21 123344556666555556677777777777766643 5666666666677777777777777766654 444444
Q ss_pred H
Q 006636 495 T 495 (637)
Q Consensus 495 ~ 495 (637)
+
T Consensus 488 t 488 (517)
T PRK10153 488 T 488 (517)
T ss_pred h
Confidence 3
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.54 E-value=0.00012 Score=55.88 Aligned_cols=79 Identities=28% Similarity=0.326 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHH
Q 006636 437 GSMDRAIEVFDKMCEHGVS-PNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK-STFLLLAEARRATGLTKEAKR 514 (637)
Q Consensus 437 g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~ 514 (637)
|+++.|+.+|+++.+.... |+...+..+..++.+.|++++|..++++ .+ ..|+. .....++.++...|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4555555555555543221 1233334455555555555555555554 21 12221 222233555555555555555
Q ss_pred HHHH
Q 006636 515 ILSK 518 (637)
Q Consensus 515 ~~~~ 518 (637)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 163
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.53 E-value=0.003 Score=53.21 Aligned_cols=99 Identities=9% Similarity=-0.096 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006636 423 VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEA 502 (637)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 502 (637)
....-.+..-+...|++++|..+|+-+....+. +..-|..|.-+|-..|++.+|+..|.......+. ++..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 344556666788999999999999999885432 5667889999999999999999999999874432 46678889999
Q ss_pred HHHcCCHHHHHHHHHHHhhhh
Q 006636 503 RRATGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 503 ~~~~g~~~eA~~~~~~~~~~~ 523 (637)
+...|+.+.|++.|+.+....
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999987663
No 164
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.011 Score=57.13 Aligned_cols=276 Identities=11% Similarity=-0.010 Sum_probs=143.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 006636 218 VLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEG 297 (637)
Q Consensus 218 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 297 (637)
.....+.+..++.+|+..+....+.... +..-|..-+..+...|++++|.--.+.-.+... .........-.++...+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd-~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKD-GFSKGQLREGQCHLALS 131 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCC-CccccccchhhhhhhhH
Confidence 3445666666777777777777665322 233344444455556666666554444333211 11122333344444444
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhC-CCCCCHHHHHHHH-HHHHHcCChhHHHHH
Q 006636 298 KIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEF-RVNPDVITYSTIM-NAWSTAGFMDKCKEI 375 (637)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~-~~~~~~g~~~~a~~~ 375 (637)
+..+|...++.-. .+ ....+...++..... .-+|...++..+- .++.-.|+.+.|.++
T Consensus 132 ~~i~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e 191 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE 191 (486)
T ss_pred HHHHHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence 4444444443110 00 001111111111111 1123333333332 244566777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHCCCCCCHHH-------------HHHHHHHHHhcCCHH
Q 006636 376 FDDMGKAGIKPDAHAYSILAK--GYVREQEPEKAEELLMTMIESGFHPNVVI-------------FTTIISGWCSDGSMD 440 (637)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------------~~~li~~~~~~g~~~ 440 (637)
-..+.+.. ....+..+++ .+--.++.+.|...|++.++. .|+... |..=..-..+.|++.
T Consensus 192 a~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 192 AIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYR 266 (486)
T ss_pred HHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchh
Confidence 77666643 1222223332 233466777777777777664 243322 122223345778888
Q ss_pred HHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHH
Q 006636 441 RAIEVFDKMCEH---GVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK-STFLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 441 ~A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~ 516 (637)
.|.+.|.+.+.. .++|+...|.....+..+.|+.++|+.--+...+ +.|.. ..|..-..++...++|++|.+-+
T Consensus 267 ~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV~d~ 344 (486)
T KOG0550|consen 267 KAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAVEDY 344 (486)
T ss_pred HHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888753 3445556677777777788888888877776654 33321 23334445566677888888888
Q ss_pred HHHhhh
Q 006636 517 SKIKNK 522 (637)
Q Consensus 517 ~~~~~~ 522 (637)
+++...
T Consensus 345 ~~a~q~ 350 (486)
T KOG0550|consen 345 EKAMQL 350 (486)
T ss_pred HHHHhh
Confidence 887544
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.51 E-value=0.016 Score=55.92 Aligned_cols=208 Identities=11% Similarity=0.107 Sum_probs=96.6
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006636 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEG----GHKP-SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
...|....+.|-..|++++|...|.+..+. +-+. -...|.....++. ..++++|...+.
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~~~--------------- 98 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAIECYE--------------- 98 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHHHHHH---------------
Confidence 445666677777777777777777665431 1000 0111222222221 223444433333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhc----CCCCCCHHHHHHHHH
Q 006636 147 AVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIA-GKPEESVKLLDLMSRE----GNVKPNLRTYNVLVR 221 (637)
Q Consensus 147 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----~~~~~~~~~~~~li~ 221 (637)
..+..|...|++..|-+++..+ ...|-.. |++++|++.|.+.... +....-..++..+..
T Consensus 99 ~A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 99 KAIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence 3334555666666555544443 3344444 6777777777665432 100001234555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCC--hhhHHHHHH
Q 006636 222 AWCNEKNITEAWNVMHKMAASGMKP-----DVV-TYNTIATAYAQNGEADQAEEVIVEMEHNG--VQPN--GRTCGIIIS 291 (637)
Q Consensus 222 ~~~~~g~~~~A~~~~~~~~~~g~~~-----~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~--~~~~~~li~ 291 (637)
.+.+.|++++|..+|++....-... +.. .+...+-++...|++..|...+++..... +..+ ......|+.
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~ 243 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLE 243 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence 6777777777777777765532211 111 12223335555677777777777665432 1111 223344455
Q ss_pred HHHh--cCCHHHHHHHHHHHH
Q 006636 292 GYCK--EGKIKEALRFARTMK 310 (637)
Q Consensus 292 ~~~~--~g~~~~A~~~~~~~~ 310 (637)
+|-. ...+.+++.-|+.+.
T Consensus 244 A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 244 AYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHhCCHHHHHHHHHHHcccC
Confidence 5433 123555555555443
No 166
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.50 E-value=0.12 Score=50.80 Aligned_cols=436 Identities=10% Similarity=0.085 Sum_probs=228.4
Q ss_pred cccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006636 66 KESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFF 145 (637)
Q Consensus 66 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 145 (637)
...+.++.+|-.|+.-|-.+|..++.++++++|..- .+--..+|..-+++-...+++.....+|.+.+... .+...|
T Consensus 36 kdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW 112 (660)
T COG5107 36 KDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLW 112 (660)
T ss_pred hcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHH
Confidence 456788999999999999999999999999999752 22244578888887778899999999999998764 456667
Q ss_pred HHHHHHHHhcCCH------HHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHH---------hcCChHHHHHHHHHHHhcCC
Q 006636 146 NAVINAFSESGNM------EEAMDTFWKMKE-SGLTPT-TSTYNTLIKGYG---------IAGKPEESVKLLDLMSREGN 208 (637)
Q Consensus 146 ~~ll~~~~~~g~~------~~A~~~~~~m~~-~~~~~~-~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~~~ 208 (637)
...+.--.+.... ..-.++|+-... .++.|- ...|+..+..+- .+.+++.....+.++....
T Consensus 113 ~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP- 191 (660)
T COG5107 113 MLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTP- 191 (660)
T ss_pred HHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCc-
Confidence 7666544443311 112233443333 233333 234555544332 2345666777777776531
Q ss_pred CCCC-HHHHHH------HHHH-----HHh--cCCHHHHHHHHHHHHH--CCCC----CCHHHH-----------HHHHHH
Q 006636 209 VKPN-LRTYNV------LVRA-----WCN--EKNITEAWNVMHKMAA--SGMK----PDVVTY-----------NTIATA 257 (637)
Q Consensus 209 ~~~~-~~~~~~------li~~-----~~~--~g~~~~A~~~~~~~~~--~g~~----~~~~~~-----------~~li~~ 257 (637)
+ .+ ...|+- =+.. ++. .--+-.|...++++.. .|.. .+..++ ...|..
T Consensus 192 ~-~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkw 270 (660)
T COG5107 192 M-GNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKW 270 (660)
T ss_pred c-ccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhH
Confidence 0 11 122211 1111 110 1113345555555432 2221 112222 223322
Q ss_pred HHHc-----CC-H-HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHH
Q 006636 258 YAQN-----GE-A-DQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIK-GFV 329 (637)
Q Consensus 258 ~~~~-----g~-~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~-~~~ 329 (637)
-... |+ . ....-+|++.... +.....+|----..+...++-+.|++....-... .|+ .+..+. .|.
T Consensus 271 E~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps---L~~~lse~ye 344 (660)
T COG5107 271 EMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS---LTMFLSEYYE 344 (660)
T ss_pred hhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc---hheeHHHHHh
Confidence 1111 11 1 1222334444332 1233445554445555667777777766544322 222 222222 222
Q ss_pred HcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHH---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006636 330 EIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWST---AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEK 406 (637)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 406 (637)
-..+-+.....|+...+. ...--..+..=+. -|+++...+++-.-. ..-..+|..++..-.+..-++.
T Consensus 345 l~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~----~k~t~v~C~~~N~v~r~~Gl~a 415 (660)
T COG5107 345 LVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKRI----NKLTFVFCVHLNYVLRKRGLEA 415 (660)
T ss_pred hcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHHH----hhhhhHHHHHHHHHHHHhhHHH
Confidence 333333333333322110 0000000000011 222322222211111 1234566667776667777778
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHH
Q 006636 407 AEELLMTMIESG-FHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTF-ETLMWGYSEARQPWRAEEILQIM 484 (637)
Q Consensus 407 A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~m 484 (637)
|..+|-++.+.+ +.+++.++++++.-++ .|+...|..+|+--... -||...| .-.+.-+...++-..|..+|+..
T Consensus 416 aR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFets 492 (660)
T COG5107 416 ARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETS 492 (660)
T ss_pred HHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 888888877776 4567777777776443 56777777887765543 2444433 34455566777777788888754
Q ss_pred HHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc
Q 006636 485 KAFGVHPQ--KSTFLLLAEARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 485 ~~~g~~p~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
... +..+ ..+|..+++--..-|++..+..+=+++.+..|.
T Consensus 493 v~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 493 VER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 321 2222 457777777777778888777777777666553
No 167
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.49 E-value=0.0031 Score=60.53 Aligned_cols=43 Identities=7% Similarity=0.093 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006636 196 SVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMA 240 (637)
Q Consensus 196 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 240 (637)
|..+|+...+. ++.+...|...+..+.+.++.+.|..+|++..
T Consensus 55 A~~Ife~glk~--f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i 97 (280)
T PF05843_consen 55 ARKIFERGLKK--FPSDPDFWLEYLDFLIKLNDINNARALFERAI 97 (280)
T ss_dssp HHHHHHHHHHH--HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHH--CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 44444444433 23334444444444444444444444444443
No 168
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.49 E-value=0.00013 Score=43.28 Aligned_cols=29 Identities=45% Similarity=0.968 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006636 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHG 453 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 453 (637)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555554443
No 169
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.49 E-value=0.002 Score=61.81 Aligned_cols=129 Identities=12% Similarity=0.122 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006636 74 SMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAA-LTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAF 152 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 152 (637)
.|..+++..-+.+..+.|+.+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555666555555666666666665321 1122233322222 11234444455555555544 344555555555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006636 153 SESGNMEEAMDTFWKMKESGLTPT---TSTYNTLIKGYGIAGKPEESVKLLDLMSR 205 (637)
Q Consensus 153 ~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 205 (637)
.+.++.+.|+.+|++.... +.++ ...|...+..-.+.|+++.+..+..++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555443 1111 12455555555555555555555555544
No 170
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.48 E-value=0.0018 Score=64.71 Aligned_cols=124 Identities=10% Similarity=0.105 Sum_probs=101.1
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHH
Q 006636 278 GVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEY--GVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVIT 355 (637)
Q Consensus 278 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 355 (637)
+.+.+......+++.+....+++++..++.+.... ....-..|..+++..|.+.|..+.+.+++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33446666777788888888899999998888765 2222344667999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006636 356 YSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVRE 401 (637)
Q Consensus 356 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 401 (637)
++.|++.+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999988877667777777666666665
No 171
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.47 E-value=0.0026 Score=56.06 Aligned_cols=94 Identities=17% Similarity=0.076 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006636 388 AHAYSILAKGYVREQEPEKAEELLMTMIESGFHP--NVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLM 465 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 465 (637)
...+..++..+...|++++|...|++.......+ ...+|..+...+...|++++|+..+++...... ....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHH
Confidence 4445566666666777777777777776542111 124666677777777777777777777765421 1233455555
Q ss_pred HHHH-------hcCChhHHHHHHH
Q 006636 466 WGYS-------EARQPWRAEEILQ 482 (637)
Q Consensus 466 ~~~~-------~~g~~~~A~~~~~ 482 (637)
..+. ..|++++|...++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 5555 5555554444443
No 172
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.45 E-value=0.0094 Score=62.21 Aligned_cols=140 Identities=12% Similarity=0.053 Sum_probs=100.2
Q ss_pred CCCCCCHHHHHHHHHHHHH--c---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHH
Q 006636 382 AGIKPDAHAYSILAKGYVR--E---QEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDG--------SMDRAIEVFDK 448 (637)
Q Consensus 382 ~~~~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~ 448 (637)
...+.+...|...+.+... . +..+.|..+|++.++.. |.....|..+..++.... +...+.+..++
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3446788889888887543 2 23779999999999874 444556665555443321 23344455555
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc
Q 006636 449 MCEH-GVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 449 m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
.... ....+...|..+.......|++++|...++++.+ +.|+...|..++.++...|+.++|.+.++++....|
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 4443 1334567788887777788999999999999988 557888999999999999999999999988755533
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.44 E-value=0.004 Score=54.86 Aligned_cols=96 Identities=15% Similarity=0.067 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006636 353 VITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKP--DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTII 430 (637)
Q Consensus 353 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 430 (637)
...+..+...+...|++++|...|+........+ ...++..+...|...|++++|+..+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4456666777778888888888888887653222 23577888888888899999999888887753 44456666666
Q ss_pred HHHH-------hcCCHHHHHHHHHHH
Q 006636 431 SGWC-------SDGSMDRAIEVFDKM 449 (637)
Q Consensus 431 ~~~~-------~~g~~~~A~~~~~~m 449 (637)
..+. ..|++++|+..+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 6666 667777555555443
No 174
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.43 E-value=0.00034 Score=53.32 Aligned_cols=20 Identities=40% Similarity=0.489 Sum_probs=8.8
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 006636 183 LIKGYGIAGKPEESVKLLDL 202 (637)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~ 202 (637)
+..+|.+.|++++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 44444444444444444433
No 175
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.13 Score=49.95 Aligned_cols=63 Identities=14% Similarity=0.076 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006636 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEE 135 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 135 (637)
........+.+.+..++..|+..+...++.. +.++.-|..-+..+...+++++++.-.++-++
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r 111 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVR 111 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhhee
Confidence 3334445566777778888888888887753 23455566666667777777777665555444
No 176
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.41 E-value=0.00019 Score=42.47 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 006636 73 RSMTKLMNSLIERGKPQEAQAIFNNLIEGG 102 (637)
Q Consensus 73 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 102 (637)
++||.++++|++.|++++|.++|++|.+.|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 367777777777777777777777777655
No 177
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.38 E-value=0.058 Score=46.26 Aligned_cols=130 Identities=12% Similarity=0.076 Sum_probs=78.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHH
Q 006636 385 KPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVS-PNLKTFET 463 (637)
Q Consensus 385 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ 463 (637)
.|+...-..|..+..+.|+..+|...|.+...--+..|....-.+..+....+++.+|...++++.+.... -.+.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 35555555666677777777777777777665444556666666666777777777777777776654210 01224445
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006636 464 LMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~ 516 (637)
+.+++...|+..+|...|+...+ .-|+...-......+...|+.+||..-+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 56667777777777777777665 3455444334444556666666554433
No 178
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.37 E-value=0.0033 Score=49.00 Aligned_cols=77 Identities=17% Similarity=0.380 Sum_probs=50.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHHHCCCCCCHHHHH
Q 006636 76 TKLMNSLIERGKPQEAQAIFNNLIEGGH-KPSLVTYTTLLAALTIQK--------RFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 76 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
...|..+...+++..-..+|+.+.+.|+ .|+..+|+.++.+.++.. +....+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456666677888888888888888888 888888888887776542 1223444455555555555555555
Q ss_pred HHHHHH
Q 006636 147 AVINAF 152 (637)
Q Consensus 147 ~ll~~~ 152 (637)
.++..+
T Consensus 109 ivl~~L 114 (120)
T PF08579_consen 109 IVLGSL 114 (120)
T ss_pred HHHHHH
Confidence 554443
No 179
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.35 E-value=0.25 Score=51.19 Aligned_cols=202 Identities=12% Similarity=0.103 Sum_probs=128.8
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH----------HHHHhcCChhHHHHHHHHHHHCCCC
Q 006636 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLL----------AALTIQKRFNSIHSIMSQVEENGMD 139 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll----------~~~~~~~~~~~a~~~~~~~~~~~~~ 139 (637)
|.+..|..|.......-.++-|...|-+... .+.......|- ..-+-.|++++|.++|-.|.+++
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh--
Confidence 5567787777776666677777777765532 22221111111 11223478999999988776653
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHH
Q 006636 140 PDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPT----TSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRT 215 (637)
Q Consensus 140 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 215 (637)
..|..+.+.|++-...++++.- |-..| ...|+.+...+.....+++|.+.|..-...
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------- 825 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------- 825 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------
Confidence 2466777888887766665431 11112 346888888888888888888888754321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 006636 216 YNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCK 295 (637)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 295 (637)
...+.++.+..++++-+.+-..+ +-|....-.+..++.+.|.-++|.+.|-+.. . | -..+..|..
T Consensus 826 -e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~-p-----kaAv~tCv~ 890 (1189)
T KOG2041|consen 826 -ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS---L-P-----KAAVHTCVE 890 (1189)
T ss_pred -HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc---C-c-----HHHHHHHHH
Confidence 23456666666666655554444 3466667778899999999999988874432 1 2 234567888
Q ss_pred cCCHHHHHHHHHHHH
Q 006636 296 EGKIKEALRFARTMK 310 (637)
Q Consensus 296 ~g~~~~A~~~~~~~~ 310 (637)
.+++.+|.++-+...
T Consensus 891 LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 891 LNQWGEAVELAQRFQ 905 (1189)
T ss_pred HHHHHHHHHHHHhcc
Confidence 888888888776543
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.33 E-value=0.084 Score=45.34 Aligned_cols=128 Identities=16% Similarity=0.090 Sum_probs=75.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHH
Q 006636 175 PTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMK-PDVVTYNT 253 (637)
Q Consensus 175 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~~~~~~~~ 253 (637)
|++.....|..+....|+..+|...|.+... |.+..|......+..+....+++..|...++.+.+.... .++.+...
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4555556666666777777777777766653 334556666666666667777777777777666554210 11223344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 006636 254 IATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRF 305 (637)
Q Consensus 254 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 305 (637)
+.+.+...|.+..|+..|+..... -|+...-......+.+.|+.+++..-
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHH
Confidence 566677777777777777776654 23443333344556666666555443
No 181
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.27 E-value=0.007 Score=47.25 Aligned_cols=79 Identities=15% Similarity=0.344 Sum_probs=57.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHH
Q 006636 111 TTLLAALTIQKRFNSIHSIMSQVEENGM-DPDSIFFNAVINAFSESG--------NMEEAMDTFWKMKESGLTPTTSTYN 181 (637)
Q Consensus 111 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g--------~~~~A~~~~~~m~~~~~~~~~~~~~ 181 (637)
...|..|...+++...-.+|..+.+.|+ -|+..+|+.++.+.++.. .+-..+.+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456666667888888888888888888 788888888888776643 2345566777777777777777777
Q ss_pred HHHHHHHh
Q 006636 182 TLIKGYGI 189 (637)
Q Consensus 182 ~li~~~~~ 189 (637)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 77766543
No 182
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.017 Score=53.93 Aligned_cols=99 Identities=13% Similarity=0.148 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHH
Q 006636 386 PDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDG---SMDRAIEVFDKMCEHGVSPNLKTFE 462 (637)
Q Consensus 386 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~ 462 (637)
.|...|..|...|...|+++.|..-|.+..+.. ++|+..+..+..++.... ...++..+|+++...+.. |..+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHH
Confidence 345555555555555555555555555555442 444444444444433221 233455555555543211 333444
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 006636 463 TLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 463 ~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
.|...+...|++.+|...|+.|.+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh
Confidence 444455555555555555555544
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.26 E-value=0.072 Score=51.40 Aligned_cols=111 Identities=20% Similarity=0.167 Sum_probs=55.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHH
Q 006636 184 IKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNE-KNITEAWNVMHKMAAS----GMKPD--VVTYNTIAT 256 (637)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~----g~~~~--~~~~~~li~ 256 (637)
+..|...|++..|-.++..+ ...|... |++++|++.|++..+. | .+. ...+..++.
T Consensus 101 ~~~y~~~G~~~~aA~~~~~l----------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKEL----------------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHH----------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHH
Confidence 34455555555555544443 3345455 6777777777766532 2 111 234445666
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006636 257 AYAQNGEADQAEEVIVEMEHNGVQPNG------RTCGIIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 257 ~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
.+.+.|++++|.++|+++.......+. ..+...+-++...|++..|.+.+++...
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 677777777777777776554322111 1112223344455666666666666543
No 184
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.24 E-value=0.0014 Score=47.04 Aligned_cols=56 Identities=13% Similarity=0.186 Sum_probs=28.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006636 395 AKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 395 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
...+.+.|++++|...|+++++.. +.+...|..+..++...|++++|...|+++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334445555555555555555443 33444555555555555555555555555544
No 185
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.21 E-value=0.0016 Score=47.35 Aligned_cols=62 Identities=24% Similarity=0.294 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 006636 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDG-SMDRAIEVFDKMCE 451 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 451 (637)
.+|..+...+...|++++|+..|.+.++.. +.+...|..+..+|...| ++++|++.|++.++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344444444444444444444444444432 333444444444444444 34444444444443
No 186
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.20 E-value=0.2 Score=46.96 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=36.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006636 253 TIATAYAQNGEADQAEEVIVEMEHN--GVQPNGRTCGIIISGYCKEGKIKEALRFARTMK 310 (637)
Q Consensus 253 ~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 310 (637)
.+...|.+.|.+..|..-++.+++. +.+........++.+|.+.|..++|......+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3556677777777777777777654 122234455566677777777777776665543
No 187
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.19 E-value=0.1 Score=48.85 Aligned_cols=54 Identities=9% Similarity=0.183 Sum_probs=28.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006636 430 ISGWCSDGSMDRAIEVFDKMCEH--GVSPNLKTFETLMWGYSEARQPWRAEEILQI 483 (637)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 483 (637)
..-|.+.|.+..|+.-|+.+++. +.+........++.+|...|..++|......
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34455566666666666666543 2222333455555666666666666555443
No 188
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.18 E-value=0.0016 Score=46.62 Aligned_cols=56 Identities=14% Similarity=0.080 Sum_probs=34.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006636 430 ISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
...+...|++++|+..|+++++.... +...+..+..++...|++++|..+|+++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44566666777777777766664411 444666666666667777777766666654
No 189
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.051 Score=49.28 Aligned_cols=131 Identities=11% Similarity=0.028 Sum_probs=54.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHH-----HHH
Q 006636 145 FNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTY-----NVL 219 (637)
Q Consensus 145 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-----~~l 219 (637)
.+.++..+.-.+.+.-....+.+.++...+.++.....|.+.-.+.|+.+.|...|++..+..+ +.|..+. ...
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhhh
Confidence 3334444444444444444444444444444444444444444455555555555544332210 1111111 122
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006636 220 VRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHN 277 (637)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 277 (637)
...|.-.+++.+|...++++...+ +.|+..-|.-.-+..-.|+...|++..+.|...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 223334444445555554444432 123333332222223334555555555555443
No 190
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.16 E-value=0.0017 Score=47.19 Aligned_cols=64 Identities=20% Similarity=0.197 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHH
Q 006636 422 NVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEAR-QPWRAEEILQIMKA 486 (637)
Q Consensus 422 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 486 (637)
+..+|..+...+...|++++|+..|++.++.... +...|..+..++...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4556777777777777777777777777764321 4446667777777777 57777777766654
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.11 E-value=0.039 Score=44.84 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=26.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006636 396 KGYVREQEPEKAEELLMTMIESGFHPN--VVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
.++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|+.+|++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444555555555555554443222 22333444445555555555555555543
No 192
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.08 E-value=0.016 Score=51.27 Aligned_cols=88 Identities=18% Similarity=0.348 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHH
Q 006636 105 PSLVTYTTLLAALTI-----QKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSES----------------GNMEEAMD 163 (637)
Q Consensus 105 ~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------------g~~~~A~~ 163 (637)
.+..+|..++..+.+ .|..+-....+..|.+.|+..|..+|+.|++.+=+. .+.+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 355555555555543 345566666666777777777777777777665431 12345666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006636 164 TFWKMKESGLTPTTSTYNTLIKGYGIAGK 192 (637)
Q Consensus 164 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 192 (637)
++++|...|+-||..++..++..+.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 66666666666666666666666655443
No 193
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.039 Score=51.57 Aligned_cols=99 Identities=13% Similarity=0.114 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006636 176 TTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNE---KNITEAWNVMHKMAASGMKPDVVTYN 252 (637)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~g~~~~~~~~~ 252 (637)
|...|-.|...|...|+.+.|..-|....+.. +++...+..+..++... ....++..+|+++++.+ +-|+.+..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 55566666666666666666666666665543 34455555555444322 22345566666666543 22444555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC
Q 006636 253 TIATAYAQNGEADQAEEVIVEMEHN 277 (637)
Q Consensus 253 ~li~~~~~~g~~~~A~~~~~~~~~~ 277 (637)
.|...+...|++.+|...++.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 5555666666666666666666654
No 194
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.03 E-value=0.0028 Score=45.90 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006636 156 GNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSR 205 (637)
Q Consensus 156 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 205 (637)
|++++|+..|+++.+..+. +...+..+..+|.+.|++++|.++++++..
T Consensus 5 ~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp THHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred cCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444333222 333333444444444444444444444433
No 195
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.02 E-value=0.0024 Score=46.19 Aligned_cols=50 Identities=18% Similarity=0.267 Sum_probs=21.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006636 401 EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 401 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
.|++++|+++|+++.... |.+...+..+..+|.+.|++++|..+++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444332 23444444444444444444444444444443
No 196
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.02 E-value=0.38 Score=46.89 Aligned_cols=110 Identities=13% Similarity=0.046 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006636 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYS 469 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 469 (637)
+.+.-+.-+...|+...|.++-.+.. -||...|...+.+++..|+|++-..+... +-.++-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 34445666778899988888877774 68999999999999999999887765432 124578999999999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006636 470 EARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 470 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
..|...+|..+..+ +. + ..-+..|.+.|.+.+|.+..-+.
T Consensus 249 ~~~~~~eA~~yI~k-----~~-~----~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPK-----IP-D----EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHh-----CC-h----HHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999999988876 22 2 34567788999999998876554
No 197
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.00 E-value=0.19 Score=51.59 Aligned_cols=88 Identities=16% Similarity=0.223 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------
Q 006636 387 DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK------- 459 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------- 459 (637)
+..+...+..-+.+...+.-|.++|.+|-.. .+++......+++.+|..+-++.-+ ..||..
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHh
Confidence 3444555555555666677777777776421 2455566677777777777766544 233321
Q ss_pred ----HHHHHHHHHHhcCChhHHHHHHHHHH
Q 006636 460 ----TFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 460 ----~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
-|..-=.+|.++|+..||.++++++.
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 12222234555555556665555553
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.99 E-value=0.059 Score=43.77 Aligned_cols=55 Identities=22% Similarity=0.284 Sum_probs=25.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006636 151 AFSESGNMEEAMDTFWKMKESGLTPT--TSTYNTLIKGYGIAGKPEESVKLLDLMSR 205 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 205 (637)
++-..|+.++|+.+|++....|+... ...+..+.+.+...|++++|..+|++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555554443322 12333344445555555555555554444
No 199
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.94 E-value=0.029 Score=52.91 Aligned_cols=89 Identities=15% Similarity=0.105 Sum_probs=45.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHHHcC
Q 006636 434 CSDGSMDRAIEVFDKMCEHGVSPNL----KTFETLMWGYSEARQPWRAEEILQIMKA-FGVHPQ-KSTFLLLAEARRATG 507 (637)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~p~-~~~~~~l~~~~~~~g 507 (637)
.+.|++++|+..|+.+++.. |+. ..+..+..+|...|++++|...|+.+.+ +.-.|. ...+..++.++...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 34455555555555555432 221 2444555555556666666666655543 111111 223444555555666
Q ss_pred CHHHHHHHHHHHhhhhc
Q 006636 508 LTKEAKRILSKIKNKER 524 (637)
Q Consensus 508 ~~~eA~~~~~~~~~~~~ 524 (637)
+.++|...++++....|
T Consensus 232 ~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 232 DTAKAKAVYQQVIKKYP 248 (263)
T ss_pred CHHHHHHHHHHHHHHCc
Confidence 66666666666655544
No 200
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.92 E-value=0.015 Score=55.96 Aligned_cols=131 Identities=13% Similarity=0.036 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCC-CCCHH
Q 006636 355 TYSTIMNAWSTAGFMDKCKEIFDDMGK----AGI-KPDAHAYSILAKGYVREQEPEKAEELLMTMIE----SGF-HPNVV 424 (637)
Q Consensus 355 ~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~ 424 (637)
.|..|...|.-.|+++.|+..++.-+. .|- ......+..|..++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455666666677889998888765332 121 11245677788888889999999988876432 221 22344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006636 425 IFTTIISGWCSDGSMDRAIEVFDKMCE----HG-VSPNLKTFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
+..+|..+|.-..++++|+.++.+-+. .+ ..-....+.+|..++...|..++|+.+.+...
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 566788888888889999988876432 11 11234578889999999999999888776654
No 201
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.90 E-value=0.47 Score=46.23 Aligned_cols=110 Identities=16% Similarity=0.189 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 006636 284 RTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAW 363 (637)
Q Consensus 284 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 363 (637)
.+.+.-+.-+...|+...|.++..+.. .|+..-|...+.+++..++|++...+-.. +.+++-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 344555666667777777777766654 56777777778888888877766654321 12346677777777
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006636 364 STAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMT 413 (637)
Q Consensus 364 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 413 (637)
.+.|...+|..+...+ + +..-+.+|.++|++.+|.+.-.+
T Consensus 248 ~~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777777666552 1 14456677777777777665433
No 202
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.88 E-value=0.01 Score=57.04 Aligned_cols=265 Identities=15% Similarity=0.108 Sum_probs=137.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHH--HC--CC-CCCHHHHHHHHH
Q 006636 79 MNSLIERGKPQEAQAIFNNLIEGGHKP---SLVTYTTLLAALTIQKRFNSIHSIMSQVE--EN--GM-DPDSIFFNAVIN 150 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~--~~-~~~~~~~~~ll~ 150 (637)
...+++.|+....+.+|+..++.|-.. -...|..|..+|.-.+++++|++.+..=+ .+ |- .-...+...|..
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 456889999999999999999876321 13356777788888889999988765421 11 10 001122233444
Q ss_pred HHHhcCCHHHHHHHHHH----HHHCCC-CCCHHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHHh
Q 006636 151 AFSESGNMEEAMDTFWK----MKESGL-TPTTSTYNTLIKGYGIAGK--------------------PEESVKLLDLMSR 205 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~----m~~~~~-~~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~ 205 (637)
.+--.|.+++|...-.+ ..+.|- ......+..+...|...|+ ++.|.++|.+=.+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 44455666666543222 222221 0123455567777766553 2233333332111
Q ss_pred ----cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006636 206 ----EGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMA----ASGMK-PDVVTYNTIATAYAQNGEADQAEEVIVEMEH 276 (637)
Q Consensus 206 ----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 276 (637)
.|.--.--..|..|...|.-.|+++.|+...+.-+ +.|-+ .-...+..|.+++.-.|+++.|.+.|+....
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 11000011234445555555667777766554322 11211 1123455666677777777777776665422
Q ss_pred ----CCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHHcCCHhhHHHHHHH
Q 006636 277 ----NGV-QPNGRTCGIIISGYCKEGKIKEALRFARTMKEY----G-VHPNLVIFNLLIKGFVEIMDRDGVDEVLAL 343 (637)
Q Consensus 277 ----~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 343 (637)
.|- .....+..+|...|.-..++++|+.++.+-... + ..-....+-++..+|...|..+.|....+.
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 111 122344556666666666677777666543211 0 111334555666666666666666555444
No 203
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.81 E-value=0.61 Score=46.13 Aligned_cols=427 Identities=14% Similarity=0.123 Sum_probs=232.2
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HH
Q 006636 82 LIERGKPQEAQAIFNNLIEGGHKPSLV------TYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA--FS 153 (637)
Q Consensus 82 ~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~ 153 (637)
+-+++++.+|.++|.++.+. ...+++ .-+.++++|.. ++.+.....+....+. .| ...|-.|..+ +-
T Consensus 16 Lqkq~~~~esEkifskI~~e-~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDE-KESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHH-hhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 34789999999999998764 222322 33456777764 4555555555555443 22 2223333333 33
Q ss_pred hcCCHHHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCCCHHHH
Q 006636 154 ESGNMEEAMDTFWKMKES--GLTP------------TTSTYNTLIKGYGIAGKPEESVKLLDLMSREG---NVKPNLRTY 216 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~--~~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~ 216 (637)
+.+.+..|.+.+..-... +..| |-+.-+..++.+...|++.+++.+++++...- ....++.+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 778899999888765543 2111 22223566788899999999999999987642 123688888
Q ss_pred HHHHHHHHhcCC---------------HHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 006636 217 NVLVRAWCNEKN---------------ITEAWNVMHKMAAS------GMKPDVVTYNTIATAYAQN--GEADQAEEVIVE 273 (637)
Q Consensus 217 ~~li~~~~~~g~---------------~~~A~~~~~~~~~~------g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~ 273 (637)
+.++-.+.+.-- ++.+.-+..+|... .+.|-......++....-. ....--.++++.
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 886665543211 12222222222211 1122222222222221111 111112222222
Q ss_pred HHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCC
Q 006636 274 MEHNGVQPNG-RTCGIIISGYCKEGKIKEALRFARTMKEYGVH----PNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR 348 (637)
Q Consensus 274 ~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 348 (637)
-...-+.|+- -+...|+..+.+ +.+++..+.+.+....+. .=..++..++...++.++...|...+..+....
T Consensus 251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld 328 (549)
T PF07079_consen 251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD 328 (549)
T ss_pred HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 2233333442 223344444444 555555555554332111 123467888888888899888888888776644
Q ss_pred CCCCHHHH-------HHHHHHHH----HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH---HHHHcCC-HHHHHHHHHH
Q 006636 349 VNPDVITY-------STIMNAWS----TAGFMDKCKEIFDDMGKAGIKPDAHAYSILAK---GYVREQE-PEKAEELLMT 413 (637)
Q Consensus 349 ~~~~~~~~-------~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~-~~~A~~~~~~ 413 (637)
|+...- ..+.+..+ ..-+...=+.++..+....+. ......-|+. -+-+.|. -++|+.+++.
T Consensus 329 --p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~ 405 (549)
T PF07079_consen 329 --PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKL 405 (549)
T ss_pred --CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 222111 11112211 111233334455555544321 1222222332 2344555 7889999999
Q ss_pred HHHCCCCCCHHHHHHHHH----HHHhc---CCHHHHHHHHHHHHHCCCCCCH----HHHHHHH--HHHHhcCChhHHHHH
Q 006636 414 MIESGFHPNVVIFTTIIS----GWCSD---GSMDRAIEVFDKMCEHGVSPNL----KTFETLM--WGYSEARQPWRAEEI 480 (637)
Q Consensus 414 ~~~~~~~~~~~~~~~li~----~~~~~---g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~--~~~~~~g~~~~A~~~ 480 (637)
+.+-. +-|...-|.+.. .|.+. ..+.+-+.+-+-+.+.|+.|-. ..-+.|. .-+...|++.++.-+
T Consensus 406 il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 406 ILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred HHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 88753 345544444332 22221 2233444444445567877643 3333443 345568899888766
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 006636 481 LQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKN 521 (637)
Q Consensus 481 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 521 (637)
-.-+.+ +.|+..+|..++-.+....+++||..++.++|.
T Consensus 485 s~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 485 SSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 555555 889999999999999999999999999999864
No 204
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.75 E-value=0.25 Score=50.74 Aligned_cols=100 Identities=23% Similarity=0.226 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006636 74 SMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFS 153 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 153 (637)
.+.+-+-.|...|.+++|.++--- |+ ...-|..|.......-+++-|.+.|.+....
T Consensus 558 p~~~~m~q~Ieag~f~ea~~iacl----gV--v~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl----------------- 614 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIACL----GV--TDTDWRELAMEALEALDFETARKAYIRVRDL----------------- 614 (1081)
T ss_pred cccccchhhhhccchhhhhccccc----ce--ecchHHHHHHHHHhhhhhHHHHHHHHHHhcc-----------------
Confidence 344445567788888777653211 11 2223444444333334455555544433221
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006636 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDL 202 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 202 (637)
.+-+-..-++++.++|-.|+... +...++-.|.+.+|.++|.+
T Consensus 615 ---~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 615 ---RYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred ---HHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 11222334566667766666543 34445566777777777754
No 205
>PRK15331 chaperone protein SicA; Provisional
Probab=96.74 E-value=0.11 Score=44.08 Aligned_cols=87 Identities=7% Similarity=-0.001 Sum_probs=55.2
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 006636 398 YVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRA 477 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 477 (637)
+...|++++|..+|+-+...+ +-|..-|..|..+|-..+++++|+..|......+. -|+..+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 346677777777777666554 44556666666666677777777777766655433 2444455566666677777777
Q ss_pred HHHHHHHHH
Q 006636 478 EEILQIMKA 486 (637)
Q Consensus 478 ~~~~~~m~~ 486 (637)
+..|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 777766654
No 206
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.73 E-value=0.051 Score=46.49 Aligned_cols=69 Identities=12% Similarity=0.258 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-----HCCCCCCHHH
Q 006636 426 FTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK-----AFGVHPQKST 495 (637)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~ 495 (637)
...++..+...|++++|+.+.+.+....+ -|...|..++.+|...|+..+|.+.|+++. +.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34444555556666666666666655432 244456666666666666666666665542 3566666554
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.69 E-value=0.012 Score=43.22 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=32.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006636 396 KGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (637)
..|.+.+++++|.++++.+...+ |.++..|.....++...|++++|...|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34555566666666666665553 445555555555666666666666666666553
No 208
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.64 E-value=0.039 Score=52.06 Aligned_cols=94 Identities=10% Similarity=0.009 Sum_probs=49.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHH
Q 006636 391 YSILAKGYVREQEPEKAEELLMTMIESGFHPN----VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGV--SPNLKTFETL 464 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~l 464 (637)
|...+..+.+.|++++|...|+.+++. .|+ ...+..++..|...|++++|...|+.+.+.-. ......+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 333333334456666666666666554 222 23455556666666666666666666654311 0113344444
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 006636 465 MWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
+..+...|+.++|..+|+...+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5555566666666666666554
No 209
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.64 Score=42.49 Aligned_cols=132 Identities=11% Similarity=0.062 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH-----HHH
Q 006636 320 IFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAY-----SIL 394 (637)
Q Consensus 320 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-----~~l 394 (637)
+.+.++..+...+.+.-...+++.+++...+.++.....+.+.-.+.|+.+.|...|+...+..-..+.... ...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 445556666666677777777777777666667777788888888888888888888876653222333233 233
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006636 395 AKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 395 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (637)
...|.-++++..|...+.++...+ +.|+...|.-.-+..-.|+..+|++..+.|.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334556777888888888777664 556666666666666678888888888888774
No 210
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.49 E-value=0.91 Score=44.05 Aligned_cols=145 Identities=17% Similarity=0.204 Sum_probs=93.7
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006636 368 FMDKCKEIFDDMGKAGIKPDAHA-YSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVF 446 (637)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 446 (637)
+...|...-.+..+. .||..- -..-..++.+.|+..++-.+++.+-+. .|.+.++...+ +.+.|+ .++.-+
T Consensus 244 dp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~lY~--~ar~gd--ta~dRl 315 (531)
T COG3898 244 DPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALLYV--RARSGD--TALDRL 315 (531)
T ss_pred ChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHHHH--HhcCCC--cHHHHH
Confidence 344555555555443 344322 223356778889999999999988876 45555444332 334443 444444
Q ss_pred HHHHHC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhh
Q 006636 447 DKMCEH-GVSPN-LKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRAT-GLTKEAKRILSKIKNK 522 (637)
Q Consensus 447 ~~m~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-g~~~eA~~~~~~~~~~ 522 (637)
++.... .++|| .+....+..+-...|++..|..--+...+ ..|....|..|.++-... |+-+++..++-+...-
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 444321 24454 45777788888888998888776666555 778888999998886555 9999999998887543
No 211
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.47 E-value=0.42 Score=43.43 Aligned_cols=23 Identities=22% Similarity=0.122 Sum_probs=10.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 006636 254 IATAYAQNGEADQAEEVIVEMEH 276 (637)
Q Consensus 254 li~~~~~~g~~~~A~~~~~~~~~ 276 (637)
+...|.+.|.+..|..-++.+++
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHH
Confidence 33444555555555555555444
No 212
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.43 E-value=0.35 Score=44.00 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=28.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006636 254 IATAYAQNGEADQAEEVIVEMEHNGVQ--PNGRTCGIIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 254 li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
....+...|++++|...|+.+....+. --....-.++.++.+.|++++|...+++.++
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444455556666666666665543211 1122333445555555666666655555544
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.39 E-value=0.024 Score=41.63 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=42.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 006636 431 SGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS 494 (637)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 494 (637)
..|.+.+++++|+++++.+...++. +...+......+...|++++|.+.|+...+ ..|+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~ 63 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDP 63 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcH
Confidence 4567777888888888888775432 455666777777788888888888877766 445443
No 214
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.36 E-value=0.038 Score=47.25 Aligned_cols=74 Identities=19% Similarity=0.293 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHHHH
Q 006636 388 AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMC-----EHGVSPNLKTFE 462 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~~~~ 462 (637)
..+...++..+...|++++|..+.+.+.... |-|...|..+|.+|...|+..+|+++|+++. +.|+.|+..+-.
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 4456667778889999999999999999875 7788999999999999999999999998875 358999887643
No 215
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=1.9 Score=45.64 Aligned_cols=346 Identities=11% Similarity=0.024 Sum_probs=196.6
Q ss_pred HHCCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh--HHHHHHHHHHHhc
Q 006636 134 EENGMDPDSIFFNA-----VINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKP--EESVKLLDLMSRE 206 (637)
Q Consensus 134 ~~~~~~~~~~~~~~-----ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~ 206 (637)
...|++.+..-|.. ++.-+...+.+..|+++-..+...-.. ...++.....-+.+..+. +++++.+++=...
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 44566666655544 455666777888888887776543222 256777777777766432 2233333222221
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 006636 207 GNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMK----PDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPN 282 (637)
Q Consensus 207 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 282 (637)
. ......|..+.+-....|+.+-|..+++.=...+.. .+..-+..-+.-+.+.|+.+....++-.+... .+
T Consensus 503 ~--~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~ 577 (829)
T KOG2280|consen 503 K--LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LN 577 (829)
T ss_pred c--CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HH
Confidence 1 134567777888788888888888877653332211 11122334555667778888877777766543 11
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHH-HH----HhhCCCCCCHHHHH
Q 006636 283 GRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVL-AL----MKEFRVNPDVITYS 357 (637)
Q Consensus 283 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~-~~----~~~~~~~~~~~~~~ 357 (637)
...+... ..+...|..+|.+..+. .|..+ +-+.|-+..+..++-.+. +. -...+..|+ ..
T Consensus 578 ~s~l~~~------l~~~p~a~~lY~~~~r~---~~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk 642 (829)
T KOG2280|consen 578 RSSLFMT------LRNQPLALSLYRQFMRH---QDRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LK 642 (829)
T ss_pred HHHHHHH------HHhchhhhHHHHHHHHh---hchhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HH
Confidence 2222211 22345566666665442 11111 111122222222111111 11 001111222 22
Q ss_pred HHHHHHHHcCChh----------HHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006636 358 TIMNAWSTAGFMD----------KCKEIFDDMGK-AGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIF 426 (637)
Q Consensus 358 ~l~~~~~~~g~~~----------~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 426 (637)
....++++..... .-.++.+.+.. .|..-..-+.+--+.-+...|+..+|.++-.+.. -||...|
T Consensus 643 ~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~ 718 (829)
T KOG2280|consen 643 TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLW 718 (829)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhH
Confidence 3334444433311 11222222222 1222223344445566778899999999888876 6899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006636 427 TTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRAT 506 (637)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 506 (637)
-.-+.+++..+++++-+++-+.+. .+.-|.....+|.+.|+.+||.+++-+.. +.. ..+.+|.+.
T Consensus 719 wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~ 783 (829)
T KOG2280|consen 719 WLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRV 783 (829)
T ss_pred HHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHh
Confidence 999999999999988766555432 36678888999999999999999987653 222 577889999
Q ss_pred CCHHHHHHHHHHH
Q 006636 507 GLTKEAKRILSKI 519 (637)
Q Consensus 507 g~~~eA~~~~~~~ 519 (637)
|++.+|.++.-+-
T Consensus 784 ~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 784 GDVKEAADLAAEH 796 (829)
T ss_pred ccHHHHHHHHHHh
Confidence 9999999887553
No 216
>PRK11906 transcriptional regulator; Provisional
Probab=96.12 E-value=0.46 Score=47.66 Aligned_cols=146 Identities=15% Similarity=0.105 Sum_probs=100.5
Q ss_pred hhHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006636 369 MDKCKEIFDDMGK-AGIKPD-AHAYSILAKGYV---------REQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDG 437 (637)
Q Consensus 369 ~~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 437 (637)
.+.|..+|.+... ....|+ ...|..+...+. ......+|.++.++..+.+ +.|......+..+....|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 4566667777662 122333 333333333222 1234567888888888886 788898888888888889
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHH
Q 006636 438 SMDRAIEVFDKMCEHGVSPNLK-TFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK---STFLLLAEARRATGLTKEAK 513 (637)
Q Consensus 438 ~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~~~eA~ 513 (637)
+++.|...|++.... .||.. +|......+..+|+.++|.+.+++..+ ..|.. ......++.|+.. .+++|+
T Consensus 353 ~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 353 QAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred chhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 999999999999885 46654 677777778889999999999998665 55553 2444555677665 468888
Q ss_pred HHHHHHh
Q 006636 514 RILSKIK 520 (637)
Q Consensus 514 ~~~~~~~ 520 (637)
+++-+-.
T Consensus 428 ~~~~~~~ 434 (458)
T PRK11906 428 KLYYKET 434 (458)
T ss_pred HHHhhcc
Confidence 8876643
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.06 E-value=0.024 Score=42.31 Aligned_cols=60 Identities=22% Similarity=0.342 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006636 390 AYSILAKGYVREQEPEKAEELLMTMIES----GF-HPN-VVIFTTIISGWCSDGSMDRAIEVFDKM 449 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 449 (637)
+++.+...|...|++++|+..|++..+. |- .|+ ..++..+..+|...|++++|++++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444455555555555555555544321 10 011 223444444444555555555554444
No 218
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.01 E-value=1.8 Score=42.81 Aligned_cols=26 Identities=15% Similarity=-0.098 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 006636 461 FETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
+..++.++.-.|+.++|.+..++|.+
T Consensus 308 ~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 308 VATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 33444444445555555555555443
No 219
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.01 E-value=1.3 Score=43.85 Aligned_cols=163 Identities=17% Similarity=0.102 Sum_probs=86.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006636 358 TIMNAWSTAGFMDKCKEIFDDMGKAG---IKPDAHAYSILAKGYVR---EQEPEKAEELLMTMIESGFHPNVVIFTTIIS 431 (637)
Q Consensus 358 ~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 431 (637)
.++-.|....+++..+++.+.+...- +.....+-...+-++.+ .|+.++|++++..+......+++.+|..++.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 33444666666666666666665431 11122222233334444 6666777777666444434566666666665
Q ss_pred HHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh----HHHHHH---HHH-HHCCCC---C
Q 006636 432 GWCS---------DGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPW----RAEEIL---QIM-KAFGVH---P 491 (637)
Q Consensus 432 ~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~---~~m-~~~g~~---p 491 (637)
.|-. ....++|+..|.+.-+. .||..+-..++..+...|... +..++- ..+ .+.|.. .
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 5431 12367788888877763 356544333333344444322 222222 111 133322 2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006636 492 QKSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 492 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
+--.+..++.+..-.|+.+.|.+..++|...
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2334556777778888888888888887644
No 220
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.01 E-value=0.00083 Score=40.53 Aligned_cols=32 Identities=9% Similarity=0.076 Sum_probs=28.2
Q ss_pred HHHHHhhhccCCCCCCcccccccccccCCCchhh
Q 006636 539 LERLYHKEATTASYPNLLQIPNVVSSDQKGSAAA 572 (637)
Q Consensus 539 ~e~~~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~ 572 (637)
.+++++++|+++. ++..||++|...|++++|.
T Consensus 2 y~kAie~~P~n~~--a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAE--AYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHH--HHHHHHHHHHHCcCHHhhc
Confidence 4788999999876 5789999999999999986
No 221
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.97 E-value=0.19 Score=46.21 Aligned_cols=34 Identities=26% Similarity=0.236 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006636 476 RAEEILQIMKAFGVHPQKSTFLLLAEARRATGLT 509 (637)
Q Consensus 476 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 509 (637)
-++.++++|..+|+.||.++-..+++++++.|..
T Consensus 141 C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 141 CAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 4788899999999999999999999999888763
No 222
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.96 E-value=0.29 Score=48.90 Aligned_cols=68 Identities=16% Similarity=0.225 Sum_probs=58.0
Q ss_pred ccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006636 67 ESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSL----VTYTTLLAALTIQKRFNSIHSIMSQVEEN 136 (637)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 136 (637)
..+.+...|+.+...|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44567888999999999999999999999998875 4542 46899999999999999999999998875
No 223
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.96 E-value=0.081 Score=52.72 Aligned_cols=99 Identities=13% Similarity=0.072 Sum_probs=71.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006636 385 KPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNV----VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKT 460 (637)
Q Consensus 385 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 460 (637)
+.+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..++++++.+ .| .
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~ 145 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---K 145 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---h
Confidence 446788999999999999999999999999886 4553 469999999999999999999999999852 11 2
Q ss_pred HHHHHH--HHHhcCChhHHHHHHHHHHHCCC
Q 006636 461 FETLMW--GYSEARQPWRAEEILQIMKAFGV 489 (637)
Q Consensus 461 ~~~l~~--~~~~~g~~~~A~~~~~~m~~~g~ 489 (637)
|..+.. .+..-....+..++++.+.+.|.
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 221111 11122233455666666666554
No 224
>PRK15331 chaperone protein SicA; Provisional
Probab=95.95 E-value=0.13 Score=43.77 Aligned_cols=92 Identities=11% Similarity=0.104 Sum_probs=73.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006636 429 IISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGL 508 (637)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 508 (637)
...-+...|++++|..+|+-+...+.. |..-|..|..+|-..+.+++|+..|......+.. |+..+-.....+...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCC
Confidence 344466899999999999999876543 6777888999999999999999999887543322 33345567888999999
Q ss_pred HHHHHHHHHHHhhh
Q 006636 509 TKEAKRILSKIKNK 522 (637)
Q Consensus 509 ~~eA~~~~~~~~~~ 522 (637)
.+.|+..|+.+..+
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998765
No 225
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.94 E-value=2.5 Score=43.71 Aligned_cols=389 Identities=12% Similarity=0.040 Sum_probs=201.0
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006636 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLV-TYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 150 (637)
...|+.|+.---...+.+.+..+++.++.. .|... -|-....-=.+.|..+.+.++|++.+. +++.....|.....
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLA 121 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHH
Confidence 344555555444444445566666666642 34433 233333333455667777777777664 34555556655554
Q ss_pred HHH-hcCCHHHHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH---
Q 006636 151 AFS-ESGNMEEAMDTFWKMKES-GLT-PTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWC--- 224 (637)
Q Consensus 151 ~~~-~~g~~~~A~~~~~~m~~~-~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~--- 224 (637)
.+. ..|+.+.....|+..... |.. .+...|...|..-..++++.....+++++.+. | ..-++....-|.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P-~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----P-LHQLNRHFDRFKQLL 196 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----h-hhHhHHHHHHHHHHH
Confidence 443 345666666666665543 211 13445666666666666777777777766653 1 111222111111
Q ss_pred h------cCCHHHHHHHHHHHHH--------------------CCCCCCH--HHHHHHHH-------HHHHcCCHHHHHH
Q 006636 225 N------EKNITEAWNVMHKMAA--------------------SGMKPDV--VTYNTIAT-------AYAQNGEADQAEE 269 (637)
Q Consensus 225 ~------~g~~~~A~~~~~~~~~--------------------~g~~~~~--~~~~~li~-------~~~~~g~~~~A~~ 269 (637)
+ ....+++.++-..... .+-+.+. ...+.+.. .+-..-...+...
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~ 276 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRW 276 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 1 1122222222211111 0000000 01111111 1111222223333
Q ss_pred HHHHHHhC---CC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHH
Q 006636 270 VIVEMEHN---GV----QPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLA 342 (637)
Q Consensus 270 ~~~~~~~~---~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 342 (637)
.|+.-.+. .+ +++..+|..-++.-...|+.+...-+|+...--- ..-...|--.+.-....|+.+.+..++.
T Consensus 277 ~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~ 355 (577)
T KOG1258|consen 277 GFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLA 355 (577)
T ss_pred hhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHH
Confidence 33333221 11 2245678888888888999999999988876311 1112234334444444588888887777
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHH---HHHHHHHHCC
Q 006636 343 LMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA-HAYSILAKGYVREQEPEKAE---ELLMTMIESG 418 (637)
Q Consensus 343 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~ 418 (637)
...+.-.+..+.+--.-....-..|++..|..+++.+...- |+. .+-..-+.+..+.|..+.+. .++......
T Consensus 356 ~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~- 432 (577)
T KOG1258|consen 356 RACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG- 432 (577)
T ss_pred hhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc-
Confidence 66554443333332222233456789999999999988763 432 23333345566788888877 333333322
Q ss_pred CCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 006636 419 FHPNVVIFTTIISG-----WCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQP 474 (637)
Q Consensus 419 ~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 474 (637)
.-+..+...+..- +...++.+.|..++.++.+. .+++...|..++..+...+..
T Consensus 433 -~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 433 -KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred -ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCcc
Confidence 2233333333222 34568899999999999875 445667788888877666543
No 226
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.80 E-value=0.033 Score=41.54 Aligned_cols=26 Identities=15% Similarity=0.370 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006636 425 IFTTIISGWCSDGSMDRAIEVFDKMC 450 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (637)
+++.+...|...|++++|+..|++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555555555555555555554
No 227
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.75 E-value=2.2 Score=41.60 Aligned_cols=311 Identities=15% Similarity=0.168 Sum_probs=197.5
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCCHHHHH
Q 006636 87 KPQEAQAIFNNLIEGGHKPSLVTYTTLLAAL--TIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAF--SESGNMEEAM 162 (637)
Q Consensus 87 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~g~~~~A~ 162 (637)
.+..+...|..-... ..|..|-.++ ...|+-..|.++-.+..+. +..|......|+.+- .-.|+.+.|.
T Consensus 68 sP~t~~Ryfr~rKRd------rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar 140 (531)
T COG3898 68 SPYTARRYFRERKRD------RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDAR 140 (531)
T ss_pred CcHHHHHHHHHHHhh------hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHH
Confidence 344556666655431 1234443333 3457888888877765432 244544455555443 3569999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH----HHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006636 163 DTFWKMKESGLTPTTSTYNTLIKG----YGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHK 238 (637)
Q Consensus 163 ~~~~~m~~~~~~~~~~~~~~li~~----~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 238 (637)
+-|+.|.. |+.+-..=+++ --+.|..+.|...-+...... +.-...+...+...+..|+++.|+++++.
T Consensus 141 ~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~ 213 (531)
T COG3898 141 KKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDA 213 (531)
T ss_pred HHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHH
Confidence 99999986 44443332322 246788999999888887653 34467889999999999999999999988
Q ss_pred HHHCC-CCCCHHH--HHHHHHHHH---HcCCHHHHHHHHHHHHhCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHH
Q 006636 239 MAASG-MKPDVVT--YNTIATAYA---QNGEADQAEEVIVEMEHNGVQPNGRTC-GIIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 239 ~~~~g-~~~~~~~--~~~li~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
-+... +.++..- -..|+.+-. -.-+...|...-.+..+ +.||..-- ..-...+.+.|+..++-.+++.+-+
T Consensus 214 ~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK 291 (531)
T COG3898 214 QRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK 291 (531)
T ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh
Confidence 76543 3444322 223333221 12345566665555444 35554332 2345788999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHH---hhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 006636 312 YGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALM---KEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA 388 (637)
Q Consensus 312 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 388 (637)
.. |.+..+...+ +.+.| +.+..-++.. .... +.+......+..+-...|++..|..--+...+. .|..
T Consensus 292 ~e--PHP~ia~lY~--~ar~g--dta~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pre 362 (531)
T COG3898 292 AE--PHPDIALLYV--RARSG--DTALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRE 362 (531)
T ss_pred cC--CChHHHHHHH--HhcCC--CcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--Cchh
Confidence 74 4443333222 33444 3444444433 2222 235566667777778889999888877776664 6788
Q ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCC
Q 006636 389 HAYSILAKGYVR-EQEPEKAEELLMTMIESGFHPN 422 (637)
Q Consensus 389 ~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~ 422 (637)
..|-.|.+.-.. .|+-.++...+-+.++..-.|+
T Consensus 363 s~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 363 SAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred hHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 888888887654 4999999999999987643343
No 228
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.73 E-value=0.24 Score=45.77 Aligned_cols=100 Identities=14% Similarity=0.126 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHH-HCCCCCCH-HHHHHHH
Q 006636 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVS--PNLKTFETLMWGYSEARQPWRAEEILQIMK-AFGVHPQK-STFLLLA 500 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~p~~-~~~~~l~ 500 (637)
.|+.-+. +.+.|++.+|...|...++..+. -....+-.|..++...|++++|..+|..+. +++-.|.. +.+.-++
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4554444 44567788888888877765311 112345567788888888888888887774 45555553 6788888
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhcc
Q 006636 501 EARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 501 ~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
....+.|+.++|...++++..+.|.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 8888889999999998888877663
No 229
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.67 E-value=0.92 Score=36.79 Aligned_cols=66 Identities=14% Similarity=0.269 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006636 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVS 455 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 455 (637)
.-...-++...+.|.-+.-.++++++.+.+ .+++...-.+..+|.+.|+..++.+++.++-+.|++
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 334445566677777777777777766533 567777777777777777777777777777776653
No 230
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.65 E-value=2.6 Score=41.83 Aligned_cols=402 Identities=11% Similarity=0.096 Sum_probs=205.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006636 93 AIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESG 172 (637)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 172 (637)
++=+++.+ .+.|..+|-.|+.-+..++..+...+++++|..- ++--..+|..-+++-....++.....+|.+.....
T Consensus 30 rLRerIkd--NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIKD--NPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhhc--CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 44455554 2558899999999999999999999999998753 34455678888887777889999999999988764
Q ss_pred CCCCHHHHHHHHHHHHhcCCh------HHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHH---------hcCCHHHHHHHH
Q 006636 173 LTPTTSTYNTLIKGYGIAGKP------EESVKLLDLMSREGNVK-PNLRTYNVLVRAWC---------NEKNITEAWNVM 236 (637)
Q Consensus 173 ~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~~-~~~~~~~~li~~~~---------~~g~~~~A~~~~ 236 (637)
. +...|...+.---+.+.. ....+.|+-......+. .....|+..+...- .+.+++...+.+
T Consensus 107 l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 107 L--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred c--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 3 466677666544443311 11122333333211122 23445555544332 233455666667
Q ss_pred HHHHHCCCCCCHHHHHH------HHHHHHH-------cCCHHHHHHHHHHHHh--CCCC----CChhhHHHH--------
Q 006636 237 HKMAASGMKPDVVTYNT------IATAYAQ-------NGEADQAEEVIVEMEH--NGVQ----PNGRTCGII-------- 289 (637)
Q Consensus 237 ~~~~~~g~~~~~~~~~~------li~~~~~-------~g~~~~A~~~~~~~~~--~~~~----~~~~~~~~l-------- 289 (637)
.+|+..-+..=...|+- =++-... .--+-.|...++++.. .|.. .+..+++..
T Consensus 185 ~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~W 264 (660)
T COG5107 185 MRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNW 264 (660)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchh
Confidence 77765322111122221 1111100 0113345555555432 2221 112222221
Q ss_pred ---HHHHHhc-----CC-HHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHH
Q 006636 290 ---ISGYCKE-----GK-IKE-ALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTI 359 (637)
Q Consensus 290 ---i~~~~~~-----g~-~~~-A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 359 (637)
|.--... |+ ... .--++++.... +.-...+|----.-+...++.+.|.......... .|. .-..+
T Consensus 265 lNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps--L~~~l 339 (660)
T COG5107 265 LNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS--LTMFL 339 (660)
T ss_pred hhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc--hheeH
Confidence 1100000 00 000 00111111111 0112222222222233344444444444332221 122 11112
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH------H---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006636 360 MNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYV------R---EQEPEKAEELLMTMIESGFHPNVVIFTTII 430 (637)
Q Consensus 360 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~------~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 430 (637)
...|.-..+-+.....|+.... .|..-|. . .|+++...+++-+-+ ..=..+|...+
T Consensus 340 se~yel~nd~e~v~~~fdk~~q-----------~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~----~k~t~v~C~~~ 404 (660)
T COG5107 340 SEYYELVNDEEAVYGCFDKCTQ-----------DLKRKYSMGESESASKVDNNFEYSKELLLKRI----NKLTFVFCVHL 404 (660)
T ss_pred HHHHhhcccHHHHhhhHHHHHH-----------HHHHHHhhhhhhhhccccCCccccHHHHHHHH----hhhhhHHHHHH
Confidence 2222223333333333333221 1111111 0 223322222221111 22356788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCC
Q 006636 431 SGWCSDGSMDRAIEVFDKMCEHG-VSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFL-LLAEARRATGL 508 (637)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~l~~~~~~~g~ 508 (637)
..-.+..-++.|..+|-+..+.+ +.++...+.+++.-+ ..|+..-|..+|+.-.. .-||...|. -.++-+.+.|+
T Consensus 405 N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~--~f~d~~~y~~kyl~fLi~ind 481 (660)
T COG5107 405 NYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLL--KFPDSTLYKEKYLLFLIRIND 481 (660)
T ss_pred HHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCc
Confidence 88888888999999999999887 566777888888755 46888899999987443 345655444 56677788899
Q ss_pred HHHHHHHHHHHhhh
Q 006636 509 TKEAKRILSKIKNK 522 (637)
Q Consensus 509 ~~eA~~~~~~~~~~ 522 (637)
-..|..+|++..++
T Consensus 482 e~naraLFetsv~r 495 (660)
T COG5107 482 EENARALFETSVER 495 (660)
T ss_pred HHHHHHHHHHhHHH
Confidence 99999999876544
No 231
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.58 E-value=0.25 Score=40.54 Aligned_cols=51 Identities=22% Similarity=0.317 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 006636 173 LTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAW 223 (637)
Q Consensus 173 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 223 (637)
..|+..+..+++.+|+..|++..|+++.+...+.-+++-+..+|..|+.-.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 445666666666666666666666666666666555555566666666544
No 232
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.54 E-value=1.2 Score=46.33 Aligned_cols=120 Identities=23% Similarity=0.221 Sum_probs=79.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCChhH
Q 006636 401 EQEPEKAEELLMTMIESGFHPNVVIFTT-IISGWCSDGSMDRAIEVFDKMCEHG---VSPNLKTFETLMWGYSEARQPWR 476 (637)
Q Consensus 401 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~l~~~~~~~g~~~~ 476 (637)
....+.|.+++..+.+. -|+...|.. -...+...|++++|++.|++..... .......+--+...+.-.+++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45677888888888876 466555543 3445667888888888888765321 11123445566777788889999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-HHHHHcCCH-------HHHHHHHHHHhhhh
Q 006636 477 AEEILQIMKAFGVHPQKSTFLLLA-EARRATGLT-------KEAKRILSKIKNKE 523 (637)
Q Consensus 477 A~~~~~~m~~~g~~p~~~~~~~l~-~~~~~~g~~-------~eA~~~~~~~~~~~ 523 (637)
|.+.|..+.+.. ......|.-+. -++...|+. ++|.+++.+++...
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 999888887632 22344455333 345666777 88888888887553
No 233
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=2.4 Score=39.81 Aligned_cols=144 Identities=13% Similarity=0.129 Sum_probs=68.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 006636 151 AFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNIT 230 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 230 (637)
.....|++.+|..+|......... +...-..++.+|...|+.+.|..++..++.... .........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhcCC
Confidence 344556666666666665554332 344555556666666666666666666554320 001111112223333333333
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCC
Q 006636 231 EAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGV-QPNGRTCGIIISGYCKEGK 298 (637)
Q Consensus 231 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~ 298 (637)
+...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.+.+. ..|...-..+++.+.-.|.
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 333333333221 12444555566666666666666665555443311 1234455556666655553
No 234
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.53 Score=46.04 Aligned_cols=139 Identities=10% Similarity=-0.015 Sum_probs=71.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006636 79 MNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNM 158 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 158 (637)
.+.|.+.|++..|...|++.... -... +.-+.++..... ..-..+++.|...|.+.+++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~--l~~~-----------~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF--LEYR-----------RSFDEEEQKKAE--------ALKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH--hhcc-----------ccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhhhH
Confidence 35677888888888888876541 0000 000001111100 11123455556666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHH
Q 006636 159 EEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNIT-EAWNVMH 237 (637)
Q Consensus 159 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~ 237 (637)
..|++.-.+....+.. |+....--..+|...|+++.|+..|.++.+.. |.|-..-+-|+.+--+..... ...++|.
T Consensus 274 ~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666665432 55555556666666666666666666666643 223333333333333333332 3355666
Q ss_pred HHHH
Q 006636 238 KMAA 241 (637)
Q Consensus 238 ~~~~ 241 (637)
.|..
T Consensus 351 ~mF~ 354 (397)
T KOG0543|consen 351 NMFA 354 (397)
T ss_pred HHhh
Confidence 6643
No 235
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.34 E-value=2.1 Score=38.84 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 006636 144 FFNAVINAFSESGNMEEAMDTFWKM 168 (637)
Q Consensus 144 ~~~~ll~~~~~~g~~~~A~~~~~~m 168 (637)
.++....+|..+|.++.|-..+++.
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHH
Confidence 4444455555555555554444443
No 236
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.33 E-value=0.4 Score=39.41 Aligned_cols=54 Identities=9% Similarity=0.148 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHc
Q 006636 453 GVSPNLKTFETLMWGYSEARQPWRAEEILQIMK-AFGVHPQKSTFLLLAEARRAT 506 (637)
Q Consensus 453 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~ 506 (637)
...|+..+..+++.+|+..|++..|+++.+... .+++..+...|..|+.-....
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 355777788888888888888888888877764 577777777777777554433
No 237
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.30 E-value=0.73 Score=37.23 Aligned_cols=93 Identities=18% Similarity=0.111 Sum_probs=69.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhc
Q 006636 79 MNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSI---FFNAVINAFSES 155 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~ 155 (637)
.-+++..|+++.|++.|.+.+.. .+..+..||.-..++.-+|+.++|+.-+.+.++..-+.... .|..-...|-..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 34667889999999999988864 23478889999999999999999999888887754233332 233334567778
Q ss_pred CCHHHHHHHHHHHHHCC
Q 006636 156 GNMEEAMDTFWKMKESG 172 (637)
Q Consensus 156 g~~~~A~~~~~~m~~~~ 172 (637)
|+.+.|..=|+...+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 88888888888887776
No 238
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.29 E-value=4.9 Score=42.70 Aligned_cols=322 Identities=13% Similarity=0.118 Sum_probs=176.2
Q ss_pred HCCCCCCHHHHH-----HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHC
Q 006636 170 ESGLTPTTSTYN-----TLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN--ITEAWNVMHKMAAS 242 (637)
Q Consensus 170 ~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~ 242 (637)
..|++.+..-|. .+|.-+...+.+..|+++-..+.... ......|.....-+.+..+ -+++.+.+++=...
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~--~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE--SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc--ccccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 346665555554 45777788899999999988775321 1124566666666666532 22333333332222
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006636 243 GMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQ----PNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNL 318 (637)
Q Consensus 243 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 318 (637)
.. -+..+|..+.+-....|+++.|..+++.-...+.. .+..-+..-+.-..+.|+.+-...++-.+... .+.
T Consensus 503 ~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~ 578 (829)
T KOG2280|consen 503 KL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNR 578 (829)
T ss_pred cC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHH
Confidence 12 35567888888888999999999887543221110 01112223334444555555555555544432 111
Q ss_pred HHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH-H----HCCCCCCHHHHHH
Q 006636 319 VIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDM-G----KAGIKPDAHAYSI 393 (637)
Q Consensus 319 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~----~~~~~~~~~~~~~ 393 (637)
..+... ..+...|..+|.++.+.. |.. .+-+.|.+..+....-.+.-+- . ..+..|+ ...
T Consensus 579 s~l~~~------l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~ 643 (829)
T KOG2280|consen 579 SSLFMT------LRNQPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKT 643 (829)
T ss_pred HHHHHH------HHhchhhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHH
Confidence 111111 122344556666554421 111 1222233333332222222111 0 1122233 333
Q ss_pred HHHHHHHcCCHH----------HHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006636 394 LAKGYVREQEPE----------KAEELLMTMIE-SGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFE 462 (637)
Q Consensus 394 l~~~~~~~g~~~----------~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 462 (637)
....+.+..... .-+++.+.+.. .+..-.-.+.+--+..+...|+..+|.++-.+..- ||-..|.
T Consensus 644 ~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~w 719 (829)
T KOG2280|consen 644 AANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWW 719 (829)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHH
Confidence 444444443321 12222233322 12233344566667778889999999988776642 7888888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006636 463 TLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 463 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
.-+.+++..+++++-.++-+++. .+.-|.-.+.+|.++|+.+||.+++-++...
T Consensus 720 Lk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l 773 (829)
T KOG2280|consen 720 LKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL 773 (829)
T ss_pred HHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh
Confidence 88999999999988776655543 1334666889999999999999999988533
No 239
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.58 Score=45.76 Aligned_cols=95 Identities=14% Similarity=0.068 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHH
Q 006636 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFL-LLAEAR 503 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~l~~~~ 503 (637)
++..+..+|.+.+++.+|++.-.+.++.+. +|...+-.-..+|...|.++.|+..|+++++ +.|+..... .++.+-
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLK 335 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHH
Confidence 344455555555555555555555555432 2444444455555555555555555555555 445443322 233222
Q ss_pred HHcCCH-HHHHHHHHHHhhh
Q 006636 504 RATGLT-KEAKRILSKIKNK 522 (637)
Q Consensus 504 ~~~g~~-~eA~~~~~~~~~~ 522 (637)
.+.... +...+++..|...
T Consensus 336 ~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 222222 2335555555443
No 240
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.01 E-value=6.4 Score=42.48 Aligned_cols=177 Identities=11% Similarity=0.102 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006636 74 SMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLA----ALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVI 149 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 149 (637)
....-+..+.+...++-|+.+-..- ..+..+...+.+ -+.+.|++++|..-|-+.+..- .| ..++
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~-----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi 404 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ-----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP-----SEVI 404 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHH
Confidence 3445688889999999998876654 234444444444 3457799999998887665431 22 2345
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 006636 150 NAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNI 229 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 229 (637)
.-|....+..+-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+... .|...-| ....+..+.+.+-.
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYL 479 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChH
Confidence 5566667777888889999998876 67778889999999999888777766554 3312112 33455555566666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006636 230 TEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEM 274 (637)
Q Consensus 230 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 274 (637)
++|..+-.+... ....... .+...+++++|++.+..+
T Consensus 480 ~~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 480 DEAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 666555443321 2222222 233456666666665543
No 241
>PRK11906 transcriptional regulator; Provisional
Probab=95.00 E-value=0.86 Score=45.77 Aligned_cols=120 Identities=11% Similarity=0.048 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006636 403 EPEKAEELLMTMIES-GFHPN-VVIFTTIISGWCS---------DGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEA 471 (637)
Q Consensus 403 ~~~~A~~~~~~~~~~-~~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 471 (637)
..+.|..+|.+.... ...|+ ...|..+..++.. .....+|.++-++..+.+.. |+.....+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhh
Confidence 356788899998821 12444 4445444444332 23466788888889887654 888888889889999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc
Q 006636 472 RQPWRAEEILQIMKAFGVHPQKS-TFLLLAEARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 472 g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
|+.+.|...|++... +.|+.. .|......+.-+|+.++|.+.+++.....|.
T Consensus 352 ~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 352 GQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred cchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 999999999999877 678754 6777777888999999999999998777553
No 242
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.95 E-value=1.6 Score=36.81 Aligned_cols=42 Identities=10% Similarity=0.090 Sum_probs=19.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006636 77 KLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTI 119 (637)
Q Consensus 77 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 119 (637)
.++..+.+.+.+......++.+...+ ..++..++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 34444444445555555555544433 2344444444444443
No 243
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.94 E-value=1.1 Score=37.74 Aligned_cols=43 Identities=7% Similarity=0.158 Sum_probs=22.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006636 358 TIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVRE 401 (637)
Q Consensus 358 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 401 (637)
.++..+...+........++.+.+.+ ..+....+.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 34445555555555555555555544 24455555555555544
No 244
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=1.7 Score=40.76 Aligned_cols=154 Identities=12% Similarity=0.052 Sum_probs=103.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 006636 114 LAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKP 193 (637)
Q Consensus 114 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 193 (637)
.......|++..|..+|+...... +.+....-.+...|...|+++.|..++..+....-.........-|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 344567788888888888887765 4456667778888888888888888888876542221222223345666666666
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006636 194 EESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGM-KPDVVTYNTIATAYAQNGEADQAEEVI 271 (637)
Q Consensus 194 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~ 271 (637)
.+...+-.+.-.. |.|...-..+...+...|+.++|++.+-.+.+++. .-|...-..|+..+.-.|.-+.+...+
T Consensus 220 ~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 220 PEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred CCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 6666666665542 45777888888888889999988888777765421 224556667888877777555444433
No 245
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.93 E-value=7.7 Score=43.66 Aligned_cols=109 Identities=18% Similarity=0.164 Sum_probs=57.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH
Q 006636 391 YSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK--TFETLMWGY 468 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~ 468 (637)
|.+..+-+...+.+++|.-.|+..-+ ..-.+.+|..+|++++|+.+..++... -|.. +-..|..-+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHH
Confidence 33344444455666666655554422 122355666677777777776666431 1222 224566677
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006636 469 SEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
...++.-+|-++..+... .|. ..+..|+.+-.+++|.++....
T Consensus 1010 ~e~~kh~eAa~il~e~~s---d~~-----~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLS---DPE-----EAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHcccchhHHHHHHHHhc---CHH-----HHHHHHhhHhHHHHHHHHHHhc
Confidence 777777777776654431 221 2333445555555555554443
No 246
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.86 E-value=1.1 Score=43.07 Aligned_cols=127 Identities=15% Similarity=0.088 Sum_probs=76.1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-H--
Q 006636 357 STIMNAWSTAGFMDKCKEIFDDMGKAGIK-----PDAHAYSILAKGYVREQEPEKAEELLMTMIES----GFHPNV-V-- 424 (637)
Q Consensus 357 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~-- 424 (637)
..+..++...+.++++++.|+...+.... ....++..|...|.+..++++|.-+..+..+. ++ .|. .
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l-~d~~~ky 204 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGL-KDWSLKY 204 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCc-CchhHHH
Confidence 34556667777788888887776542111 12467777888888888888877766655431 21 111 1
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHH
Q 006636 425 ---IFTTIISGWCSDGSMDRAIEVFDKMCE----HGVSPNL-KTFETLMWGYSEARQPWRAEEILQIM 484 (637)
Q Consensus 425 ---~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m 484 (637)
+.-.|..++...|....|.+.-++..+ .|-.|.. .....+...|...|+.+.|+.-|+..
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 222344456677777777777766543 3432222 24556677777778777777666654
No 247
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.84 E-value=3.1 Score=43.32 Aligned_cols=130 Identities=17% Similarity=0.173 Sum_probs=74.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCHH
Q 006636 145 FNAVINAFSESGNMEEAMDTFWKMKESGLTPTTS------TYNTLIKGYGI----AGKPEESVKLLDLMSREGNVKPNLR 214 (637)
Q Consensus 145 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~ 214 (637)
...++....=.|+-+.+++.+.+..+.+--..+. .|+.++..++. ....+.|.++++.+...- |+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcH
Confidence 3445555556678888888887766542111222 23333333332 345677888888887753 5555
Q ss_pred HHHHH-HHHHHhcCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006636 215 TYNVL-VRAWCNEKNITEAWNVMHKMAASGM---KPDVVTYNTIATAYAQNGEADQAEEVIVEMEHN 277 (637)
Q Consensus 215 ~~~~l-i~~~~~~g~~~~A~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 277 (637)
.|... .+.+...|++++|++.|++...... +.....+--+.-.+.-..+|++|...|..+.+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 55443 4556677888888888886553110 111223334455566667777777777776654
No 248
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.73 E-value=1.1 Score=45.92 Aligned_cols=157 Identities=11% Similarity=0.111 Sum_probs=83.1
Q ss_pred HHHHHHcCChhHHHHHHH--HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006636 79 MNSLIERGKPQEAQAIFN--NLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESG 156 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 156 (637)
.....-+|+++++.++.+ ++.. .+ +..-.+.+++-+-+.|-.+.|+.+- .|.. .-.....++|
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~---------~D~~---~rFeLAl~lg 332 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFV---------TDPD---HRFELALQLG 332 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHS---------S-HH---HHHHHHHHCT
T ss_pred HHHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhc---------CChH---HHhHHHHhcC
Confidence 344455677777766664 2221 11 2444666667777777777776653 2322 1234455677
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006636 157 NMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVM 236 (637)
Q Consensus 157 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 236 (637)
+++.|.++.++. .+...|..|.....+.|+++-|.+.|.+... |..|+-.|.-.|+.+.-.++.
T Consensus 333 ~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~ 396 (443)
T PF04053_consen 333 NLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLA 396 (443)
T ss_dssp -HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHH
T ss_pred CHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHH
Confidence 777776655443 2556777777777777777777777765432 556666666677766666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006636 237 HKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIV 272 (637)
Q Consensus 237 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 272 (637)
+.....| -++....++.-.|+.++..+++.
T Consensus 397 ~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 397 KIAEERG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHcc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555543 13334444555566666665553
No 249
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.68 E-value=1.5 Score=42.13 Aligned_cols=166 Identities=12% Similarity=0.048 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-----CCHH
Q 006636 354 ITYSTIMNAWSTAGFMDKCKEIFDDMGKA-GIKP---DAHAYSILAKGYVREQEPEKAEELLMTMIESGFH-----PNVV 424 (637)
Q Consensus 354 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~ 424 (637)
..|..+..++.+..++.+++.+-..-... |..| .-...-++..+..-.+.++++++.|+...+.... ....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 34555556666666666666655543321 2222 1234445677777888899999999887653111 1234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHH----HCCCC
Q 006636 425 IFTTIISGWCSDGSMDRAIEVFDKMCE----HGVSPNL------KTFETLMWGYSEARQPWRAEEILQIMK----AFGVH 490 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~g~~ 490 (637)
++..|.+.|.+..|+++|+-+..++.+ .++. |. .....+.-++...|..-+|.+.-++.. ..|-.
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 788899999999999999988877654 2332 22 123345567888899888888887764 45544
Q ss_pred CCHH-HHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006636 491 PQKS-TFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 491 p~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
|... ...++.|.|...|+.+.|.+-++++.
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 4432 45688899999999999988888763
No 250
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.66 E-value=2.2 Score=43.07 Aligned_cols=58 Identities=17% Similarity=0.123 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006636 427 TTIISGWCSDGSMDRAIEVFDKMCEHGVSP-NLKTFETLMWGYSEARQPWRAEEILQIM 484 (637)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 484 (637)
..+..++.+.|+.++|++.|++|.+..... +......|+.++...+.+.++..++.+-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 345555556666666666666665432111 2224555666666666666666666553
No 251
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.63 E-value=3.5 Score=37.76 Aligned_cols=124 Identities=17% Similarity=0.076 Sum_probs=56.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 006636 397 GYVREQEPEKAEELLMTMIESGF--HPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQP 474 (637)
Q Consensus 397 ~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 474 (637)
.+...|+++.|...+.+...... ......+......+...++.+.|...+.++...........+..+...+...+..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 44455555555555555533110 0122222223333445555555555555555431110234455555555555555
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006636 475 WRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 475 ~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
++|...+..... ..|+ ...+..+...+...|..+++...+.+....
T Consensus 219 ~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 219 EEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566555555543 2232 223333333333445555555555554433
No 252
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.55 E-value=0.81 Score=36.95 Aligned_cols=89 Identities=13% Similarity=0.096 Sum_probs=43.0
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH---HHHHHHHHHHHhcCC
Q 006636 398 YVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH-GVSPNL---KTFETLMWGYSEARQ 473 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~---~~~~~l~~~~~~~g~ 473 (637)
.+..|+++.|++.|.+.+..- +.....||.-..++.-.|+.++|++-+++..+. |.+ .. ..|..-...|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 445555555555555555431 344555555555555555555555555555543 211 11 122223334444555
Q ss_pred hhHHHHHHHHHHHCC
Q 006636 474 PWRAEEILQIMKAFG 488 (637)
Q Consensus 474 ~~~A~~~~~~m~~~g 488 (637)
.+.|..-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 555555555444433
No 253
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.31 E-value=0.18 Score=32.51 Aligned_cols=27 Identities=33% Similarity=0.534 Sum_probs=13.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006636 391 YSILAKGYVREQEPEKAEELLMTMIES 417 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 417 (637)
+..+...|...|++++|+++|+++++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444555555555555555555444
No 254
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.24 E-value=1.5 Score=41.70 Aligned_cols=156 Identities=12% Similarity=-0.010 Sum_probs=110.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCh
Q 006636 117 LTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKES---GLTPTTSTYNTLIKGYGIAGKP 193 (637)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~ 193 (637)
.-..|+..+|-..++++++. .|.|...+...=.+|.-.|+...-...++++... +++-.+.+-..+.-++..+|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34577888888888888875 4778888888888899999988888888888754 2222233334445566788999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHH
Q 006636 194 EESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPD---VVTYNTIATAYAQNGEADQAEEV 270 (637)
Q Consensus 194 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~ 270 (637)
++|.+.-++..+.+ +.|..+-.++...+--.++..++.+...+-...=-..+ ..-|=...-.+...+.++.|+++
T Consensus 192 ~dAEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99999999888765 56777778888888889999999888765432210111 12222344456667999999999
Q ss_pred HHHHH
Q 006636 271 IVEME 275 (637)
Q Consensus 271 ~~~~~ 275 (637)
|+.-.
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 97643
No 255
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.19 E-value=1 Score=41.70 Aligned_cols=82 Identities=18% Similarity=0.358 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----------------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006636 124 NSIHSIMSQVEENGMDPDSIFFNAVINAFSESG----------------NMEEAMDTFWKMKESGLTPTTSTYNTLIKGY 187 (637)
Q Consensus 124 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g----------------~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 187 (637)
+-.-..++.|.+.|+..|..+|+.|+..+-+-. +-+-+++++++|...|+.||..+-..|+.++
T Consensus 89 eFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~F 168 (406)
T KOG3941|consen 89 EFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAF 168 (406)
T ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHh
Confidence 333334445555555555555555554433211 2245667777777777777777777777777
Q ss_pred HhcCCh-HHHHHHHHHHHh
Q 006636 188 GIAGKP-EESVKLLDLMSR 205 (637)
Q Consensus 188 ~~~g~~-~~A~~~~~~m~~ 205 (637)
.+.+.. .+..++.-.|++
T Consensus 169 Gr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 169 GRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred ccccccHHHHHHHHHhhhh
Confidence 666543 344455555544
No 256
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.15 E-value=5.7 Score=40.33 Aligned_cols=151 Identities=13% Similarity=0.132 Sum_probs=84.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006636 77 KLMNSLIERGKPQEAQAIFNNLIEGGHKPSL-VTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSES 155 (637)
Q Consensus 77 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 155 (637)
.+|...-+..+++.-++.-.+.++ +.||- ..|..|.. -......++.++|++..+.| +. .+.+.
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAg-E~----------~lg~s 237 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALE--INPDCADAYILLAE--EEASTIVEAEELLRQAVKAG-EA----------SLGKS 237 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHH-HH----------hhchh
Confidence 455555666777777777777665 33432 23322221 12334677888888776654 10 00000
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006636 156 GNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNV 235 (637)
Q Consensus 156 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 235 (637)
......-..++....+...+-..+-..+....-+.|+.++|++.|.+|.+......+......|+.++...+.+.++..+
T Consensus 238 ~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 238 QFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred hhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 00000011122222222222334445566667788899999999988876531112345677788888888888888888
Q ss_pred HHHHHHC
Q 006636 236 MHKMAAS 242 (637)
Q Consensus 236 ~~~~~~~ 242 (637)
+.+..+.
T Consensus 318 L~kYdDi 324 (539)
T PF04184_consen 318 LAKYDDI 324 (539)
T ss_pred HHHhccc
Confidence 8887543
No 257
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.12 E-value=1.5 Score=45.06 Aligned_cols=131 Identities=17% Similarity=0.188 Sum_probs=97.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006636 75 MTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE 154 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 154 (637)
.+.+++.+-+.|.++.|+++-. |+. .-.....+.|+++.|.++..+ ..+...|..|.....+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHH
Confidence 6778888889999999987643 332 233445688999999876532 4578899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006636 155 SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWN 234 (637)
Q Consensus 155 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 234 (637)
.|+++-|.+.|.+... +..|+-.|...|+.+.-.++.+.....+ -+|....++.-.|+.++..+
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-------~~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-------DINIAFQAALLLGDVEECVD 423 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--------HHHHHHHHHHHT-HHHHHH
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-------CHHHHHHHHHHcCCHHHHHH
Confidence 9999999999988764 6778888889999988888887777665 26666777777888888887
Q ss_pred HHHHH
Q 006636 235 VMHKM 239 (637)
Q Consensus 235 ~~~~~ 239 (637)
++.+.
T Consensus 424 lL~~~ 428 (443)
T PF04053_consen 424 LLIET 428 (443)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 77553
No 258
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.05 E-value=4.6 Score=36.80 Aligned_cols=86 Identities=15% Similarity=0.239 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006636 109 TYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYG 188 (637)
Q Consensus 109 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 188 (637)
.|..-..+|...+++++|...+.+..+. ...+...|.+ ...++.|.-+.+++.+.. --+..++.-..+|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kls--Evvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLS--EVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHH
Confidence 3444455666667777777776666532 1222222221 122345555555555431 11234556666777
Q ss_pred hcCChHHHHHHHHHHH
Q 006636 189 IAGKPEESVKLLDLMS 204 (637)
Q Consensus 189 ~~g~~~~A~~~~~~m~ 204 (637)
.+|.++.|-..+++.-
T Consensus 103 E~GspdtAAmaleKAa 118 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAA 118 (308)
T ss_pred HhCCcchHHHHHHHHH
Confidence 7777777766666553
No 259
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.77 E-value=5.3 Score=36.52 Aligned_cols=199 Identities=16% Similarity=0.072 Sum_probs=116.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHH-
Q 006636 284 RTCGIIISGYCKEGKIKEALRFARTMKEY-GVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMN- 361 (637)
Q Consensus 284 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~- 361 (637)
.........+...+.+..+...+...... ........+......+...+.+..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44445555555556666655555555431 113333444445555555555666666666655533222 111222222
Q ss_pred HHHHcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 006636 362 AWSTAGFMDKCKEIFDDMGKAGI--KPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHP-NVVIFTTIISGWCSDGS 438 (637)
Q Consensus 362 ~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~ 438 (637)
.+...|+++.+...+........ ......+......+...++.+.+...+.+..... +. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 56777777777777777755221 1233344444444667788888888888877653 33 36677777778888888
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006636 439 MDRAIEVFDKMCEHGVSPN-LKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 439 ~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
++.|...+....... |+ ...+..+...+...|..+++...+.....
T Consensus 218 ~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888887642 33 34455555555566677888877777655
No 260
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.73 E-value=8.3 Score=38.61 Aligned_cols=408 Identities=12% Similarity=0.127 Sum_probs=204.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHC--CCC-----------
Q 006636 75 MTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAA--LTIQKRFNSIHSIMSQVEEN--GMD----------- 139 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~--~~~----------- 139 (637)
-+.++++|..++ .+.....+..+.+. .| ...|..+..+ +-+.+.++.|.+.+..-... +..
T Consensus 49 ~grilnAffl~n-ld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l 124 (549)
T PF07079_consen 49 GGRILNAFFLNN-LDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQL 124 (549)
T ss_pred hhHHHHHHHHhh-HHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHH
Confidence 345666665542 33333333333332 12 1223333333 23566777777766554332 111
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcC--------C-------hHHHHHH
Q 006636 140 -PDSIFFNAVINAFSESGNMEEAMDTFWKMKESG----LTPTTSTYNTLIKGYGIAG--------K-------PEESVKL 199 (637)
Q Consensus 140 -~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~----~~~~~~~~~~li~~~~~~g--------~-------~~~A~~~ 199 (637)
+|...-+..+..+...|++.+++.+++++...= ..-+..+|+.++-.+.+.= . ++.+.-.
T Consensus 125 ~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY 204 (549)
T PF07079_consen 125 FSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFY 204 (549)
T ss_pred hhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHH
Confidence 222233455666777888888888877776542 2356777777555554321 0 1111111
Q ss_pred HHHHHhcC-----CCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHH
Q 006636 200 LDLMSREG-----NVKPNLRTYNVLVRAWCN--EKNITEAWNVMHKMAASGMKPDVV-TYNTIATAYAQNGEADQAEEVI 271 (637)
Q Consensus 200 ~~~m~~~~-----~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~ 271 (637)
..+|.... .+-|-......++.-..- ..+..--.+++......-+.|+-. +...|..-+.+ +.+++..+-
T Consensus 205 ~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~c 282 (549)
T PF07079_consen 205 LKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFC 282 (549)
T ss_pred HHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHH
Confidence 12221110 011222222222221111 111111222222222222344422 22233333333 445555544
Q ss_pred HHHHhCCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHH----cCCHhh
Q 006636 272 VEMEHNGVQ----PNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFN-------LLIKGFVE----IMDRDG 336 (637)
Q Consensus 272 ~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-------~ll~~~~~----~~~~~~ 336 (637)
+.+....+. .=..++..++....+.++..+|.+.+.-+... .|+...-. .+.+..+. .-+...
T Consensus 283 e~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~ 360 (549)
T PF07079_consen 283 EAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRD 360 (549)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHH
Confidence 444332111 12356778888889999999999888877654 33332111 11222221 111233
Q ss_pred HHHHHHHHhhCCCCCCH-HH-HHHHHHHHHHcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHH----HHH---HcCCHHH
Q 006636 337 VDEVLALMKEFRVNPDV-IT-YSTIMNAWSTAGF-MDKCKEIFDDMGKAGIKPDAHAYSILAK----GYV---REQEPEK 406 (637)
Q Consensus 337 a~~~~~~~~~~~~~~~~-~~-~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~---~~g~~~~ 406 (637)
-..+++.....++.... +. ...-..-+.+.|. -++|+.+++.+.+-. +-|..+-|.+.. .|. ....+..
T Consensus 361 yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~r 439 (549)
T PF07079_consen 361 YLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPR 439 (549)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 34455555554432111 11 1112233455565 889999999988742 234444333322 232 2334455
Q ss_pred HHHHHHHHHHCCCCCCHH----HHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006636 407 AEELLMTMIESGFHPNVV----IFTTIISG--WCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEI 480 (637)
Q Consensus 407 A~~~~~~~~~~~~~~~~~----~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 480 (637)
-.++-+-+.+.|++|-.+ .-|.+..+ +..+|++.++.-.-.=+.+ +.|++.+|..++-.+....+++||.++
T Consensus 440 LlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~ 517 (549)
T PF07079_consen 440 LLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEY 517 (549)
T ss_pred HHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 555555566677766433 34444444 4578999988655544444 779999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHH
Q 006636 481 LQIMKAFGVHPQKSTFLL 498 (637)
Q Consensus 481 ~~~m~~~g~~p~~~~~~~ 498 (637)
+.. ++|+..++..
T Consensus 518 l~~-----LP~n~~~~ds 530 (549)
T PF07079_consen 518 LQK-----LPPNERMRDS 530 (549)
T ss_pred HHh-----CCCchhhHHH
Confidence 886 5677766654
No 261
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.64 E-value=0.27 Score=31.65 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 006636 180 YNTLIKGYGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 180 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (637)
|..+...|.+.|++++|.++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 262
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.44 E-value=7.8 Score=37.42 Aligned_cols=130 Identities=15% Similarity=0.206 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--c----CCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCC--
Q 006636 370 DKCKEIFDDMGKAGIKPDAHAYSILAKGYVR--E----QEPEKAEELLMTMIESGF---HPNVVIFTTIISGWCSDGS-- 438 (637)
Q Consensus 370 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~-- 438 (637)
++...+++.+.+.|+..+..+|-+....... . .....|..+|+.|.+... .++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445556666666666555444432222221 1 123456667777766421 2334444444433 2222
Q ss_pred --HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006636 439 --MDRAIEVFDKMCEHGVSPNLK--TFETLMWGYSEARQ--PWRAEEILQIMKAFGVHPQKSTFLLLAE 501 (637)
Q Consensus 439 --~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 501 (637)
.+.+..+|+.+.+.|+..+.. ....++..+..... +..+.++++.+.+.|+++...+|..++-
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 344566666666666554332 23333332222221 3356667777777777777777665543
No 263
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.32 E-value=2.8 Score=34.97 Aligned_cols=58 Identities=12% Similarity=-0.003 Sum_probs=26.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006636 79 MNSLIERGKPQEAQAIFNNLIEGGHK--PSLVTYTTLLAALTIQKRFNSIHSIMSQVEEN 136 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 136 (637)
.....+.|++.+|++.|+.+..+-.- -...+-..++.++.+.++++.|...+++.++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 33444555555555555555543110 01223334444455555555555555554444
No 264
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.23 E-value=14 Score=39.62 Aligned_cols=178 Identities=12% Similarity=0.073 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHHhcCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHH
Q 006636 193 PEESVKLLDLMSREGNVKPNLRTYNVLVRA-----WCNEKNITEAWNVMHKMAA-------SGMKPDVVTYNTIATAYAQ 260 (637)
Q Consensus 193 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~-------~g~~~~~~~~~~li~~~~~ 260 (637)
...|.+.++.....| +...-..+..+ +....+.+.|+.+|+.+.+ .| .......+..+|.+
T Consensus 228 ~~~a~~~~~~~a~~g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHHhhc----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 467888888887766 34443333333 3456788999999888866 44 33355567777776
Q ss_pred cC-----CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--H
Q 006636 261 NG-----EADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKE---GKIKEALRFARTMKEYGVHPNLVIFNLLIKGFV--E 330 (637)
Q Consensus 261 ~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~--~ 330 (637)
.. +.+.|..++.+..+.|. |+... .+...|... .+...|.++|......|. +....+.+++-... -
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~--~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGN-PDAQY--LLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGV 376 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCC-chHHH--HHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCc
Confidence 43 56778888888877764 33332 233333322 356788888888887762 22222222221111 2
Q ss_pred cCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 006636 331 IMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAG 383 (637)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 383 (637)
..+...|...+++.-+.+. |....-...+..+.. +.++.+...+..+...|
T Consensus 377 ~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 2355667777777766662 222222222233333 66666666666655554
No 265
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.12 E-value=1.6 Score=40.60 Aligned_cols=98 Identities=17% Similarity=0.198 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-CHHHHHHHH
Q 006636 144 FFNAVINAFSESGNMEEAMDTFWKMKESGLT--PTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKP-NLRTYNVLV 220 (637)
Q Consensus 144 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~~li 220 (637)
.|+.-+..| +.|++..|...|...++..+. -....+..|...+...|++++|..+|..+.+...-.| -...+..|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 466655543 667788888888877775422 1233455577777788888888888877776532112 246666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 006636 221 RAWCNEKNITEAWNVMHKMAAS 242 (637)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~~~~~ 242 (637)
....+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777777777777777777665
No 266
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.03 E-value=1.3 Score=41.76 Aligned_cols=77 Identities=16% Similarity=0.198 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 006636 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE-----HGVSPNLKTFETL 464 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~l 464 (637)
++..++..+..+|+++.+...++++.... +-|...|..++.+|.+.|+...|+..|+.+.+ .|+.|-..+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45556666666666666666666666654 55666666667777777776666666666543 3555655554444
Q ss_pred HHH
Q 006636 465 MWG 467 (637)
Q Consensus 465 ~~~ 467 (637)
..+
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
No 267
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.80 E-value=3 Score=39.76 Aligned_cols=151 Identities=13% Similarity=0.114 Sum_probs=82.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHH----HHHHHHHHcCChh
Q 006636 295 KEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYS----TIMNAWSTAGFMD 370 (637)
Q Consensus 295 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~ 370 (637)
..|++.+|-..++++.+. .|.|...+.-.=.+|...|+...-...++.+... ..+|...|. ...-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 456666666666666654 2556666666666777777777666666666543 112322222 2223344667777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 006636 371 KCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPN----VVIFTTIISGWCSDGSMDRAIEVF 446 (637)
Q Consensus 371 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~ 446 (637)
+|++.-++..+.+ +.|.-.-.++...+.-.|+..++.+...+-... .... ..-|-...-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 7777776666554 345555566666666677777776665544321 0000 011112222344456677777777
Q ss_pred HHH
Q 006636 447 DKM 449 (637)
Q Consensus 447 ~~m 449 (637)
+.-
T Consensus 271 D~e 273 (491)
T KOG2610|consen 271 DRE 273 (491)
T ss_pred HHH
Confidence 643
No 268
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.43 E-value=6.5 Score=33.82 Aligned_cols=54 Identities=11% Similarity=0.226 Sum_probs=27.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 006636 153 SESGNMEEAMDTFWKMKESGLTPTTS-TYNTLIKGYGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 153 ~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (637)
++.+..++|+..|..+.+.|..--++ ...-+.....+.|+...|+..|+++-..
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 34555666666666666654331111 1122233344556666666666666543
No 269
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.43 E-value=6.3 Score=33.65 Aligned_cols=52 Identities=10% Similarity=-0.040 Sum_probs=24.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 006636 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (637)
+.++.+++..+++.+....+. ....-..-...++..|++.+|+.+|+++...
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 445556666666655544321 1111222223344556666666666665543
No 270
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.11 E-value=1.9 Score=40.69 Aligned_cols=79 Identities=19% Similarity=0.240 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-----HCCCCCCHHHHH
Q 006636 423 VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK-----AFGVHPQKSTFL 497 (637)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~ 497 (637)
..++..++..+...|+.+.+.+.++++..... -|...|..++.+|...|+...|+..|+.+. +.|+.|......
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 45677788889999999999999999998754 378899999999999999999999998875 478888876655
Q ss_pred HHHHH
Q 006636 498 LLAEA 502 (637)
Q Consensus 498 ~l~~~ 502 (637)
....+
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44433
No 271
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.08 E-value=5.4 Score=33.29 Aligned_cols=81 Identities=10% Similarity=0.087 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006636 109 TYTTLLAALTIQKRFNSIHSIMSQVEENGMDP---DSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIK 185 (637)
Q Consensus 109 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 185 (637)
.+-.-.....+.|+++.|.+.|+.+..+- +. .....-.|+.+|.+.++++.|...+++.++..+.....-|-..+.
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 33344455568899999999999998762 32 345677789999999999999999999999876544455655555
Q ss_pred HHHhc
Q 006636 186 GYGIA 190 (637)
Q Consensus 186 ~~~~~ 190 (637)
+++..
T Consensus 91 gL~~~ 95 (142)
T PF13512_consen 91 GLSYY 95 (142)
T ss_pred HHHHH
Confidence 55443
No 272
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.87 E-value=9.1 Score=34.29 Aligned_cols=162 Identities=15% Similarity=0.125 Sum_probs=89.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHH
Q 006636 139 DPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNV 218 (637)
Q Consensus 139 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 218 (637)
|.-+.+||.|.--+...|+++.|.+.|+...+.++.-+-...|.-|..| -.|++.-|.+-|...-+.+.-.|-...|.-
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY 174 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQDDPNDPFRSLWLY 174 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhcCCCChHHHHHHH
Confidence 3346788888888889999999999999999876553333334444433 468888888877777665422222333433
Q ss_pred HHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhCCCCCC-------hhhHHHH
Q 006636 219 LVRAWCNEKNITEAWNVM-HKMAASGMKPDVVTYNT-IATAYAQNGEADQAEEVIVEMEHNGVQPN-------GRTCGII 289 (637)
Q Consensus 219 li~~~~~~g~~~~A~~~~-~~~~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~l 289 (637)
+.. ..-++.+|..-+ ++... .|..-|.. ++..|...=..+. +++++... -..+ ..+|--+
T Consensus 175 l~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~e~---l~~~~~a~-a~~n~~~Ae~LTEtyFYL 243 (297)
T COG4785 175 LNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISEET---LMERLKAD-ATDNTSLAEHLTETYFYL 243 (297)
T ss_pred HHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccHHH---HHHHHHhh-ccchHHHHHHHHHHHHHH
Confidence 332 334455554433 33332 24333332 3333332222222 22232221 1111 2345556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 006636 290 ISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 290 i~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
..-|...|+.++|..+|+-.+..
T Consensus 244 ~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 244 GKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHhccccHHHHHHHHHHHHHH
Confidence 66677778888888877776643
No 273
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.63 E-value=11 Score=34.84 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=32.0
Q ss_pred HHHcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006636 258 YAQNGEADQAEEVIVEMEHNGV--QPNGRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 258 ~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
-.+.|++++|...|+.+....+ +-...+...++-++.+.+++++|+..+++....
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3456777777777766664322 112334444555666677777777777666554
No 274
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.62 E-value=11 Score=34.83 Aligned_cols=52 Identities=6% Similarity=0.044 Sum_probs=23.9
Q ss_pred hcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006636 119 IQKRFNSIHSIMSQVEENGMDP---DSIFFNAVINAFSESGNMEEAMDTFWKMKES 171 (637)
Q Consensus 119 ~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 171 (637)
+.|++++|...|+.+...- +- ...+.-.++-++-+.++++.|+..+++....
T Consensus 46 ~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred hcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 4455555555555554331 11 1223333444444555555555555554443
No 275
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.38 E-value=1.5 Score=37.91 Aligned_cols=61 Identities=20% Similarity=0.219 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCC-----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006636 439 MDRAIEVFDKMCEHGVSPNL-KTFETLMWGYSEARQ-----------PWRAEEILQIMKAFGVHPQKSTFLLLAEAR 503 (637)
Q Consensus 439 ~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 503 (637)
+++|+.-|++.+. +.|+. .++..+..++...+. +++|.+.|++..+ .+|+.+.|..-+.+.
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 3444555555555 45665 477778777766552 3455555555555 678888887666554
No 276
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.26 E-value=7.1 Score=31.89 Aligned_cols=66 Identities=14% Similarity=0.190 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 006636 213 LRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGV 279 (637)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 279 (637)
.......+......|+-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 334444555555666666666666665542 245555555666666666666666666666666554
No 277
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.25 E-value=21 Score=37.26 Aligned_cols=389 Identities=12% Similarity=0.072 Sum_probs=223.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006636 106 SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSI-FFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLI 184 (637)
Q Consensus 106 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 184 (637)
+-..|..++.---...+.+.+..+++.++.. -|... .|......=.+.|..+.+.++|++-+.. ++.+...|....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 4445666654443344456677777777743 34443 5667777777889999999999998874 666777888777
Q ss_pred HHHH-hcCChHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--
Q 006636 185 KGYG-IAGKPEESVKLLDLMSREGNV-KPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQ-- 260 (637)
Q Consensus 185 ~~~~-~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-- 260 (637)
..+. ..|+.+...+.|+.....-+. -.+...|-..|..-..++++.....++++.++. ....++..-.-|.+
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHH
Confidence 6554 457888888889888764321 134567888888888999999999999999864 22233322222221
Q ss_pred -------cCCHHHHHHHHHHHHh--------------------CCCCCCh--hhHHHHH-------HHHHhcCCHHHHHH
Q 006636 261 -------NGEADQAEEVIVEMEH--------------------NGVQPNG--RTCGIII-------SGYCKEGKIKEALR 304 (637)
Q Consensus 261 -------~g~~~~A~~~~~~~~~--------------------~~~~~~~--~~~~~li-------~~~~~~g~~~~A~~ 304 (637)
....+++.++-..... .+-+.+. ...+.+. .+|-..-...+...
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~ 276 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRW 276 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 1223333332222211 0000000 0111111 11222222333333
Q ss_pred HHHHHHHCC---C----CCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 006636 305 FARTMKEYG---V----HPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFD 377 (637)
Q Consensus 305 ~~~~~~~~~---~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 377 (637)
.|+.-++.. + +++..+|..-+.--...|+.+.+.-+++...-- +..-...|-..+.-....|+.+-|..++.
T Consensus 277 ~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~ 355 (577)
T KOG1258|consen 277 GFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLA 355 (577)
T ss_pred hhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHH
Confidence 344333221 1 234568888888888899999888888776431 11223344444444455599888888877
Q ss_pred HHHHCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHHHC
Q 006636 378 DMGKAGIKPDAHAYSILAKG-YVREQEPEKAEELLMTMIESGFHPNVV-IFTTIISGWCSDGSMDRAI---EVFDKMCEH 452 (637)
Q Consensus 378 ~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~---~~~~~m~~~ 452 (637)
...+-..+..+. ...+-.. .-..|+++.|..+++.+...- |+.+ .-..-+....+.|+.+.+. .++....+.
T Consensus 356 ~~~~i~~k~~~~-i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~ 432 (577)
T KOG1258|consen 356 RACKIHVKKTPI-IHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG 432 (577)
T ss_pred hhhhhcCCCCcH-HHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc
Confidence 766543332222 2222222 345689999999999998762 4433 2233344456778888777 333333221
Q ss_pred CCCCCHHHHHHH----HH-HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006636 453 GVSPNLKTFETL----MW-GYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGL 508 (637)
Q Consensus 453 ~~~p~~~~~~~l----~~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 508 (637)
.. +..+...+ .+ .+.-.++.+.|..++.++.+. +.++...|..+++.+...+.
T Consensus 433 ~~--~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 433 KE--NNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred cc--CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCc
Confidence 11 22222222 22 233467888899999888762 33345567788877766653
No 278
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.96 E-value=9.6 Score=32.83 Aligned_cols=123 Identities=12% Similarity=0.086 Sum_probs=53.3
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHH--HHHHhcCCH
Q 006636 83 IERGKPQEAQAIFNNLIEGGHKPSLV-TYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSI-FFNAVI--NAFSESGNM 158 (637)
Q Consensus 83 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll--~~~~~~g~~ 158 (637)
++.+..++|+.-|..+...|...-+. ..-......+..|+...|...|+++-.....|-.. -...|= -.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 45566666666666666554432111 11112233344555566666665554432222211 111111 122334455
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006636 159 EEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSR 205 (637)
Q Consensus 159 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 205 (637)
++.....+-+...+-+.-...-..|.-+-.+.|++..|...|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 54444444443332222223334444444455555555555555544
No 279
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.73 E-value=16 Score=35.06 Aligned_cols=163 Identities=15% Similarity=0.108 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHcCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006636 354 ITYSTIMNAWSTAGFMD---KCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTII 430 (637)
Q Consensus 354 ~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 430 (637)
.++..++.+|...+..+ +|..+++.+... .+..+.++..-+..+.+.++.+.+.+++.+|+..- .-....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 34566777777766544 455566666443 22235555556666777888889999999888752 21334444444
Q ss_pred HHH---HhcCCHHHHHHHHHHHHHCCCCCCHH-HH----HHHHHHHHhcCC------hhHHHHHHHHHHH-CCCCCCHHH
Q 006636 431 SGW---CSDGSMDRAIEVFDKMCEHGVSPNLK-TF----ETLMWGYSEARQ------PWRAEEILQIMKA-FGVHPQKST 495 (637)
Q Consensus 431 ~~~---~~~g~~~~A~~~~~~m~~~~~~p~~~-~~----~~l~~~~~~~g~------~~~A~~~~~~m~~-~g~~p~~~~ 495 (637)
..+ ... ....|...++.+....+.|... .. ...+......+. .+...++++...+ .+.+.+..+
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 443 333 3456666666666443444442 11 111112222221 3333444443322 223333333
Q ss_pred HHHH-------HHHHHHcCCHHHHHHHHHHH
Q 006636 496 FLLL-------AEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 496 ~~~l-------~~~~~~~g~~~eA~~~~~~~ 519 (637)
-.++ +..+.+++++++|.++++-.
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 2222 35577889999999998754
No 280
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.69 E-value=0.68 Score=43.95 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=26.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHH
Q 006636 432 GWCSDGSMDRAIEVFDKMCEHGVSP-NLKTFETLMWGYSEARQPWRAEEILQ 482 (637)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 482 (637)
.|.++|.+++|+..|...+.. .| |++++..-..+|.+..++..|..-.+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~ 155 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCE 155 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHH
Confidence 355666666666666555543 23 55555555556665555554444333
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.68 E-value=0.63 Score=28.32 Aligned_cols=24 Identities=17% Similarity=0.409 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 006636 426 FTTIISGWCSDGSMDRAIEVFDKM 449 (637)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m 449 (637)
|..|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555555666666666665553
No 282
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.46 E-value=0.37 Score=28.92 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=10.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHH
Q 006636 420 HPNVVIFTTIISGWCSDGSMDRA 442 (637)
Q Consensus 420 ~~~~~~~~~li~~~~~~g~~~~A 442 (637)
|.|..+|+.+...|...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 33444444444444444444444
No 283
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.23 E-value=0.76 Score=27.34 Aligned_cols=27 Identities=15% Similarity=0.370 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006636 425 IFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
+|..++.+|...|++++|+..|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344455555555555555555555544
No 284
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.19 E-value=4.3 Score=35.81 Aligned_cols=96 Identities=15% Similarity=0.152 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCCHH----
Q 006636 424 VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK--TFETLMWGYSEARQPWRAEEILQIMKA---FGVHPQKS---- 494 (637)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~---- 494 (637)
..+..+..-|.+.|+.+.|++.|.++.+....|... .+..++..+...|++..+.....+... .|-.++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 356667777777888888888887777654444433 466677777777787777777666642 22112211
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 006636 495 TFLLLAEARRATGLTKEAKRILSKIKN 521 (637)
Q Consensus 495 ~~~~l~~~~~~~g~~~eA~~~~~~~~~ 521 (637)
.|..+ .+...|++.+|-+.|-....
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHccCc
Confidence 22222 23456778888777766643
No 285
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.18 E-value=18 Score=34.73 Aligned_cols=162 Identities=12% Similarity=0.071 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHcCCHhh---HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006636 320 IFNLLIKGFVEIMDRDG---VDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAK 396 (637)
Q Consensus 320 ~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 396 (637)
++..++.+|...+..+. |..+++.+..... ..+.++..-+..+.+.++.+.+.+++..|+..- .-....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 55666667776666544 4444445544332 224444455566666777888888888887652 212233443333
Q ss_pred HH---HHcCCHHHHHHHHHHHHHCCCCCCHHHH-HH-HH---HHHHhcCC------HHHHHHHHHHHHH-CCCCCCHHHH
Q 006636 397 GY---VREQEPEKAEELLMTMIESGFHPNVVIF-TT-II---SGWCSDGS------MDRAIEVFDKMCE-HGVSPNLKTF 461 (637)
Q Consensus 397 ~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~-li---~~~~~~g~------~~~A~~~~~~m~~-~~~~p~~~~~ 461 (637)
.+ ... ....|...+..+....+.|....| .. ++ ....+.++ ++....+++...+ .+.+.+..+-
T Consensus 164 ~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 33 332 334555555555443334433211 11 11 11112111 4444445553332 2233344333
Q ss_pred HHH-------HHHHHhcCChhHHHHHHHHH
Q 006636 462 ETL-------MWGYSEARQPWRAEEILQIM 484 (637)
Q Consensus 462 ~~l-------~~~~~~~g~~~~A~~~~~~m 484 (637)
.++ +..+.+.+++++|.+.|+-.
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 222 33456788999999988754
No 286
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.50 E-value=24 Score=35.16 Aligned_cols=65 Identities=14% Similarity=0.075 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006636 387 DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHP---NVVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
...+|..++..+.+.|.++.|...+.++...+... ++...-.-.......|+..+|+..+++..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556666666777777777777777666532111 223333334445556666777776666665
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.28 E-value=0.89 Score=27.64 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=15.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHH
Q 006636 75 MTKLMNSLIERGKPQEAQAIFNNLI 99 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~ 99 (637)
|+.|.+.|.+.|++++|+.+|++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566666777777777777776643
No 288
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=89.20 E-value=28 Score=35.54 Aligned_cols=78 Identities=8% Similarity=0.048 Sum_probs=43.1
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006636 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAA-LTIQKRFNSIHSIMSQVEENGMDPDSIFFNAV 148 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (637)
.|+..|..-+..+-+.+.+.+.-.+|.+|+... +.++..|-....- +-...+.+.|..+|...++.+ +.++..|-..
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n-pdsp~Lw~ey 180 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN-PDSPKLWKEY 180 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC-CCChHHHHHH
Confidence 466677777666666666777777777776631 2234444333222 222333677777777766654 3344444443
Q ss_pred H
Q 006636 149 I 149 (637)
Q Consensus 149 l 149 (637)
.
T Consensus 181 f 181 (568)
T KOG2396|consen 181 F 181 (568)
T ss_pred H
Confidence 3
No 289
>PRK09687 putative lyase; Provisional
Probab=89.08 E-value=22 Score=34.14 Aligned_cols=120 Identities=14% Similarity=0.127 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006636 352 DVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQ-EPEKAEELLMTMIESGFHPNVVIFTTII 430 (637)
Q Consensus 352 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li 430 (637)
+..+-...+.++.+.++ +.+...+-.+.+ .++..+-...+.++.+.+ .-..+...+..+.. .+|..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 33444444445444444 234444444433 233333333344443332 12334444444442 33444455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006636 431 SGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
.++.+.|+ ..|+..+-+..+.+ + .....+.++...|.. +|...+..+.
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHH
Confidence 55555555 34444444444321 1 123344455555543 4555555444
No 290
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.88 E-value=1.3 Score=26.32 Aligned_cols=27 Identities=19% Similarity=-0.006 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006636 460 TFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 460 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
+|..++.++...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344445555555555555555555443
No 291
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.84 E-value=1.4 Score=26.03 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006636 426 FTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
|..+...+...|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444444444555555555544444
No 292
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.66 E-value=9.4 Score=33.68 Aligned_cols=58 Identities=14% Similarity=0.181 Sum_probs=23.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006636 252 NTIATAYAQNGEADQAEEVIVEMEHNGVQPN--GRTCGIIISGYCKEGKIKEALRFARTM 309 (637)
Q Consensus 252 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 309 (637)
..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|......+++..+.....+.
T Consensus 40 ~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 40 EDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3344444444444444444444443322111 122333344444444444444444333
No 293
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.32 E-value=13 Score=32.88 Aligned_cols=87 Identities=16% Similarity=0.115 Sum_probs=41.3
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006636 398 YVREQEPEKAEELLMTMIESGFHPNV-----VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEAR 472 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 472 (637)
+.+.|++++|..-|.+.+..- ++.. +.|..-..++.+.+.++.|+.--.+.++.+.. .......-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence 455566666666666555541 2211 12333333455555555555555555553311 1123333344555555
Q ss_pred ChhHHHHHHHHHHH
Q 006636 473 QPWRAEEILQIMKA 486 (637)
Q Consensus 473 ~~~~A~~~~~~m~~ 486 (637)
++++|++-|+++.+
T Consensus 183 k~eealeDyKki~E 196 (271)
T KOG4234|consen 183 KYEEALEDYKKILE 196 (271)
T ss_pred hHHHHHHHHHHHHH
Confidence 55555555555544
No 294
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.02 E-value=34 Score=37.20 Aligned_cols=222 Identities=15% Similarity=0.108 Sum_probs=92.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCC-CCCCHHHHHHHHHHHHH---
Q 006636 290 ISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR-VNPDVITYSTIMNAWST--- 365 (637)
Q Consensus 290 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--- 365 (637)
...+.-.|+++.|++++-.. .+...+.+.+...+.-| |-+......-..+.... -.+...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIaL~~~---gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIALAYY---GLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT---T------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHHHHHc---CCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 45566789999999988762 11233444444443332 22221111112222211 11222567788888876
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHcCCHHHHH-----------HHHHH---HHHCCCCC-CHHHHH--
Q 006636 366 AGFMDKCKEIFDDMGKAGIKPDAHAYSILA-KGYVREQEPEKAE-----------ELLMT---MIESGFHP-NVVIFT-- 427 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~-----------~~~~~---~~~~~~~~-~~~~~~-- 427 (637)
..+...|.+.+-.+....-+.....+...+ ......++++.-+ -++++ +. ++.. +.....
T Consensus 340 ~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li--~~~~~~~~~~~i~ 417 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLI--KFDDDEDFLREII 417 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGG--T-SSSSHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeecccccc--CCCCcHHHHHHHH
Confidence 356777777776665432211122222222 2222333222211 11111 11 1122 222222
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCC-----------hhHHHHHHHHHHHCC-----C
Q 006636 428 -TIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMW-GYSEARQ-----------PWRAEEILQIMKAFG-----V 489 (637)
Q Consensus 428 -~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~-~~~~~g~-----------~~~A~~~~~~m~~~g-----~ 489 (637)
....-+...|++++|+.+|.-+.+.. .=....+.++. +...... ...|..+.+.....+ +
T Consensus 418 ~~~A~~~e~~g~~~dAi~Ly~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~ 495 (613)
T PF04097_consen 418 EQAAREAEERGRFEDAILLYHLAEEYD--KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKV 495 (613)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhc
Confidence 23334667888888888887664310 01123343333 2222222 223344333332111 2
Q ss_pred CCC-HHHHHHHHHH-----HHHcCCHHHHHHHHHHHh
Q 006636 490 HPQ-KSTFLLLAEA-----RRATGLTKEAKRILSKIK 520 (637)
Q Consensus 490 ~p~-~~~~~~l~~~-----~~~~g~~~eA~~~~~~~~ 520 (637)
.+. ..++..|+++ +.+.|++++|.+.++++.
T Consensus 496 ~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 496 SRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 222 3355555543 578999999999999985
No 295
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.99 E-value=2 Score=25.29 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006636 495 TFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 495 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
.+..+..++...|++++|++.++++...
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4555666666666666666666665444
No 296
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=86.94 E-value=20 Score=31.13 Aligned_cols=98 Identities=15% Similarity=0.166 Sum_probs=45.1
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006636 96 NNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTP 175 (637)
Q Consensus 96 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~ 175 (637)
+.+.+.+++|+...+..++..+.+.|++..... ++..++-+|.......+-.+. +....+.++=-.|..+
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR---- 87 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR---- 87 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH----
Confidence 334445566666666666666666666554433 333444444433332221111 1222233332233221
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006636 176 TTSTYNTLIKGYGIAGKPEESVKLLDLM 203 (637)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 203 (637)
=...+..++..+...|++-+|+++....
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0012444555556666666666665554
No 297
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.85 E-value=31 Score=33.37 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=10.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHH
Q 006636 302 ALRFARTMKEYGVHPNLVIFN 322 (637)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~ 322 (637)
.+.+++.|.+.|+..+..++-
T Consensus 81 ~~~~y~~L~~~gFk~~~y~~l 101 (297)
T PF13170_consen 81 VLDIYEKLKEAGFKRSEYLYL 101 (297)
T ss_pred HHHHHHHHHHhccCccChHHH
Confidence 344555555555555544433
No 298
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=86.43 E-value=24 Score=31.72 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 006636 354 ITYSTIMNAWSTAGFMDKCKEIFDDMGKA 382 (637)
Q Consensus 354 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 382 (637)
.||--+..-+...|++++|..+|+-.+..
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 45555666666666666666666665543
No 299
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=86.23 E-value=68 Score=36.68 Aligned_cols=78 Identities=13% Similarity=0.023 Sum_probs=37.2
Q ss_pred HHHHHHcCCHhhHHHHHHHHhhCCCCCCHHH--HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 006636 325 IKGFVEIMDRDGVDEVLALMKEFRVNPDVIT--YSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQ 402 (637)
Q Consensus 325 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 402 (637)
+.+|..+|++.++..+..++... .+... -..|+.-+...++.-+|-++..+.... ..-.+..|++..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~ 1040 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAK 1040 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHh
Confidence 44455556666666555554321 12211 134555555666666666555554331 112233345555
Q ss_pred CHHHHHHHHHH
Q 006636 403 EPEKAEELLMT 413 (637)
Q Consensus 403 ~~~~A~~~~~~ 413 (637)
.|++|..+-..
T Consensus 1041 ~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1041 EWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHHh
Confidence 56665555443
No 300
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.87 E-value=21 Score=30.52 Aligned_cols=52 Identities=21% Similarity=0.213 Sum_probs=29.9
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006636 399 VREQEPEKAEELLMTMIESGFHPNVVIF-TTIISGWCSDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 399 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (637)
.+.++.+++..++..+.-. .|..... ..-...+...|++.+|+.+|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3556677777777666654 3333222 22233456677777777777776553
No 301
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.54 E-value=0.022 Score=48.60 Aligned_cols=128 Identities=13% Similarity=0.193 Sum_probs=72.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006636 78 LMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGN 157 (637)
Q Consensus 78 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 157 (637)
+++.+.+.+.+......++.+...+...+....+.++..|++.++.+.....++ ..+.+-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcch
Confidence 466677777888888888888766555667778888888888877666666554 1122334456666666676
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 006636 158 MEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN 228 (637)
Q Consensus 158 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 228 (637)
+++|.-++.++.... ..+..+...++++.|.+.+.+ .++...|..++..+...+.
T Consensus 86 ~~~a~~Ly~~~~~~~---------~al~i~~~~~~~~~a~e~~~~-------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHD---------EALEILHKLKDYEEAIEYAKK-------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHHHCCTTHT---------TCSSTSSSTHCSCCCTTTGGG-------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHHHcccHH---------HHHHHHHHHccHHHHHHHHHh-------cCcHHHHHHHHHHHHhcCc
Confidence 666666665543211 011112233444444432221 1345667766666655443
No 302
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.50 E-value=11 Score=35.71 Aligned_cols=49 Identities=14% Similarity=0.258 Sum_probs=28.3
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006636 368 FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
+.++++.++..-+..|+-||.++++.+++.+.+.+++.+|..+...|+.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445555555555556666666666666666666666665555555443
No 303
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.15 E-value=64 Score=35.37 Aligned_cols=177 Identities=17% Similarity=0.224 Sum_probs=110.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006636 111 TTLLAALTIQKRFNSIHSIMSQVEENGMDPDS--IFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYG 188 (637)
Q Consensus 111 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 188 (637)
..-+..+.+..-++-|..+-. ..+.+++. .......+-+-+.|++++|...|-+.... +.| ..+|.-|.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfL 408 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFL 408 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhc
Confidence 344555556666777776543 23222221 22333344555789999999888666542 222 23566666
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006636 189 IAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAE 268 (637)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 268 (637)
...++.+-...++.+.+.| -.+...-..|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.++|.
T Consensus 409 daq~IknLt~YLe~L~~~g--la~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKG--LANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred CHHHHHHHHHHHHHHHHcc--cccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 7777778888888888887 3466667889999999999998777766544 2211 112345677777888888887
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006636 269 EVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTM 309 (637)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 309 (637)
.+-..... +...... .+-..+++++|++++..+
T Consensus 484 ~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 484 LLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 66544422 2333333 334567888888888766
No 304
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=85.15 E-value=66 Score=35.56 Aligned_cols=90 Identities=18% Similarity=0.161 Sum_probs=54.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHH-HHHhcCChHHHHHHHHHHHhcC---CCCCCHHHHHHHHH
Q 006636 153 SESGNMEEAMDTFWKMKESGLTPTT-------STYNTLIK-GYGIAGKPEESVKLLDLMSREG---NVKPNLRTYNVLVR 221 (637)
Q Consensus 153 ~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~~li~ 221 (637)
....++.+|..+..+....-..|+. ..|+.|-. .....|++++|.++.+.....- ...+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4567788888888776554222221 13343322 2234677888888777665431 12234556677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 006636 222 AWCNEKNITEAWNVMHKMAAS 242 (637)
Q Consensus 222 ~~~~~g~~~~A~~~~~~~~~~ 242 (637)
+..-.|++++|..+..+..+.
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH
Confidence 777888888888887776554
No 305
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.95 E-value=4.2 Score=31.08 Aligned_cols=50 Identities=24% Similarity=0.274 Sum_probs=38.7
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006636 473 QPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 473 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
+.-+..+-++.+..+.+.|++....+.+.+|.|.+++.-|.++++.++.+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34456666666667778888888888888888888888888888877644
No 306
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.90 E-value=2.5 Score=26.36 Aligned_cols=28 Identities=21% Similarity=0.434 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006636 73 RSMTKLMNSLIERGKPQEAQAIFNNLIE 100 (637)
Q Consensus 73 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 100 (637)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777776653
No 307
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=83.86 E-value=28 Score=30.20 Aligned_cols=130 Identities=10% Similarity=0.132 Sum_probs=63.5
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 006636 129 IMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGN 208 (637)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 208 (637)
.++.+.+.+++|+...+..++..+.+.|++..- ..+.+.++-+|.......+-.+ .+....+.++=-+|..+-
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkRL- 88 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKRL- 88 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHHh-
Confidence 334445566777777777777777777765543 3334444444544443333222 122333444444443320
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006636 209 VKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVE 273 (637)
Q Consensus 209 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 273 (637)
...+..++..+...|++-+|+++.+..... +...-..++.+..+.++...-..+|+-
T Consensus 89 ----~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~f 145 (167)
T PF07035_consen 89 ----GTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRF 145 (167)
T ss_pred ----hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHH
Confidence 013455556666677777777666554221 111223344555555554443344433
No 308
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.70 E-value=29 Score=36.29 Aligned_cols=150 Identities=13% Similarity=0.084 Sum_probs=84.2
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006636 83 IERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAM 162 (637)
Q Consensus 83 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 162 (637)
.-.|+++.|-.++-.+. ....+.+++.+.++|-.++|+.+ .+|.... .....+.|+++.|.
T Consensus 597 vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~ 657 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAF 657 (794)
T ss_pred hhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHH
Confidence 34566666655443332 22345556666666666666543 2332211 22334667777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006636 163 DTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAAS 242 (637)
Q Consensus 163 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 242 (637)
++..+.. +..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+-+....+-....+.
T Consensus 658 ~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~ 721 (794)
T KOG0276|consen 658 DLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQ 721 (794)
T ss_pred HHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence 7665542 456677777777777888777777765542 455666666666665554444444444
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006636 243 GMKPDVVTYNTIATAYAQNGEADQAEEVIVE 273 (637)
Q Consensus 243 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 273 (637)
|. + |.-..+|...|+++++.+++..
T Consensus 722 g~--~----N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 722 GK--N----NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred cc--c----chHHHHHHHcCCHHHHHHHHHh
Confidence 42 1 2223345566777777766643
No 309
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.70 E-value=25 Score=29.58 Aligned_cols=51 Identities=10% Similarity=-0.094 Sum_probs=26.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 006636 155 SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 155 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (637)
.++.+++..+++.|.-..+. ....-..-.-.+...|++++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 55666666666666554322 1111122223345666677777777666654
No 310
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.32 E-value=3.1 Score=25.85 Aligned_cols=27 Identities=11% Similarity=0.397 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006636 424 VIFTTIISGWCSDGSMDRAIEVFDKMC 450 (637)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (637)
.+++.+...|...|++++|+.++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345555555666666666666655554
No 311
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.22 E-value=31 Score=36.04 Aligned_cols=132 Identities=16% Similarity=0.215 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006636 74 SMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFS 153 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 153 (637)
..+.++..+-++|..++|+++ .+|+.- -.....+.|+++.|.++..+ ..+..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e------~~s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVE------ANSEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHh------hcchHHHHHHHHHHh
Confidence 456678888888888888754 333322 12334577899988887654 335677999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006636 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAW 233 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 233 (637)
+.+++..|.+.|..... |..|+-.+...|+-+....+-....+.| + .|....+|...|+++++.
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g--~-----~N~AF~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG--K-----NNLAFLAYFLSGDYEECL 741 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc--c-----cchHHHHHHHcCCHHHHH
Confidence 99999999999987654 6677888888888877666666666655 2 244445677889999998
Q ss_pred HHHHHH
Q 006636 234 NVMHKM 239 (637)
Q Consensus 234 ~~~~~~ 239 (637)
+++.+-
T Consensus 742 ~lLi~t 747 (794)
T KOG0276|consen 742 ELLIST 747 (794)
T ss_pred HHHHhc
Confidence 887654
No 312
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.75 E-value=4.9 Score=31.05 Aligned_cols=47 Identities=23% Similarity=0.186 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006636 476 RAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 476 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
+..+-++.+..+.+.|++....+.+.+|.|.+++.-|.++++.++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45555666667778899999999999999999999999999888755
No 313
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.03 E-value=15 Score=32.83 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=6.9
Q ss_pred CHHHHHHHHHHHHhcCCh
Q 006636 457 NLKTFETLMWGYSEARQP 474 (637)
Q Consensus 457 ~~~~~~~l~~~~~~~g~~ 474 (637)
|+..+.+|++.+.+.|+.
T Consensus 177 n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNY 194 (203)
T ss_pred CHHHHHHHHHHHHHhcch
Confidence 333333333333333333
No 314
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.52 E-value=12 Score=28.69 Aligned_cols=45 Identities=11% Similarity=0.176 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006636 125 SIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMK 169 (637)
Q Consensus 125 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 169 (637)
++.+-+..+...++.|++.+..+.+++|-+.+++..|.++|+.++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444443
No 315
>PRK09687 putative lyase; Provisional
Probab=81.48 E-value=52 Score=31.61 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=9.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 006636 429 IISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
.+.++...|.. +|+..+..+.+
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHHh
Confidence 34444444442 34444444443
No 316
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.36 E-value=16 Score=32.51 Aligned_cols=72 Identities=21% Similarity=0.199 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 006636 370 DKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIES---GFHPNVVIFTTIISGWCSDGSMDRA 442 (637)
Q Consensus 370 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A 442 (637)
+.|...|-.+...+.-.++.....|+..|. ..+.+++..++.+..+. +-.+|+..+.+|++.|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444444443334444444444333 33455555555554432 1134455555555555555555544
No 317
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.07 E-value=48 Score=30.92 Aligned_cols=91 Identities=15% Similarity=0.232 Sum_probs=43.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCC----CC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHH
Q 006636 359 IMNAWSTAGFMDKCKEIFDDMGKAGIK----PD-------AHAYSILAKGYVREQEPEKAEELLMTMIES-GFHPNVVIF 426 (637)
Q Consensus 359 l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~ 426 (637)
|...|...+.+....++++++...-.. .| ..+|..=|++|..+.+-..-..++++.... .--|.+...
T Consensus 151 Lgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm 230 (440)
T KOG1464|consen 151 LGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM 230 (440)
T ss_pred HhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH
Confidence 444455555555555555555432110 11 345556666776666666666666655421 112333333
Q ss_pred HHHHH----HHHhcCCHHHHHHHHHHH
Q 006636 427 TTIIS----GWCSDGSMDRAIEVFDKM 449 (637)
Q Consensus 427 ~~li~----~~~~~g~~~~A~~~~~~m 449 (637)
..+-. ...+.|.+++|-.-|-++
T Consensus 231 GvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 231 GVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred hHHHHcCCccccccchHHHHHhHHHHH
Confidence 22211 234566676665444333
No 318
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.73 E-value=2.8 Score=24.71 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006636 426 FTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
|..+...|...|++++|...|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444455555555555555555443
No 319
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.39 E-value=15 Score=34.91 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=56.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006636 172 GLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGN--VKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVV 249 (637)
Q Consensus 172 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 249 (637)
|.+....+...++..-....+++.+...+-++..... ..|+. +-...++.+ -.-+.++++.++..=+.-|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 4444555555556555556677777777666654210 00110 111122222 2234556666666666667777777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006636 250 TYNTIATAYAQNGEADQAEEVIVEMEH 276 (637)
Q Consensus 250 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 276 (637)
+++.+++.+.+.+++..|.++.-.|..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 777777777777777766666655544
No 320
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=79.96 E-value=28 Score=30.89 Aligned_cols=54 Identities=17% Similarity=0.118 Sum_probs=22.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006636 397 GYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 397 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
++.+.+.++.|+.--.+.++.+ +........-..+|.+...+++|+.-|+++.+
T Consensus 143 a~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 143 ALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3444444444444444444432 11222222223344444444555555544444
No 321
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=79.41 E-value=77 Score=32.29 Aligned_cols=121 Identities=7% Similarity=-0.019 Sum_probs=69.5
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006636 189 IAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAE 268 (637)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 268 (637)
..|++-.|-+-+....+.. +.++.............|.++.+...+....+. +.....+...+++...+.|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 3455555443333333322 222333333334455678888888777665433 2334556667777788888888888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006636 269 EVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYG 313 (637)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 313 (637)
..-.-|+...++ +..+........-..|-++++...++++....
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 888777766553 33333333333344566788888887776543
No 322
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.40 E-value=58 Score=30.90 Aligned_cols=55 Identities=13% Similarity=0.146 Sum_probs=30.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006636 254 IATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTM 309 (637)
Q Consensus 254 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 309 (637)
..+.|..+|.+.+|.++.+..+..+. .+...+-.++..+...|+--.+.+-+..+
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 44555566666666666665554432 34455555666666666655555555444
No 323
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=79.39 E-value=43 Score=29.34 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006636 405 EKAEELLMTMIESGFHPNVVIFTTIISGWCSDGS-----------MDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQ 473 (637)
Q Consensus 405 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 473 (637)
++|+.-|++.+... |....++..+..+|..++. +++|...|+++.+ ..|+..+|..-+..+.
T Consensus 52 edAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~---- 124 (186)
T PF06552_consen 52 EDAISKFEEALKIN-PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA---- 124 (186)
T ss_dssp HHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH----
Confidence 44444555555442 3334566666666654432 5556666666665 4689899888777663
Q ss_pred hhHHHHHHHHHHHCCCC
Q 006636 474 PWRAEEILQIMKAFGVH 490 (637)
Q Consensus 474 ~~~A~~~~~~m~~~g~~ 490 (637)
+|-++..++.+.+..
T Consensus 125 --kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 125 --KAPELHMEIHKQGLG 139 (186)
T ss_dssp --THHHHHHHHHHSSS-
T ss_pred --hhHHHHHHHHHHHhh
Confidence 466777777665544
No 324
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=78.99 E-value=82 Score=32.40 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCC
Q 006636 105 PSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA-FSESGNMEEAMDTFWKMKESG 172 (637)
Q Consensus 105 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~~~A~~~~~~m~~~~ 172 (637)
.|+..|..-+.-|-+.+.+.+...+|.+|+... |.++..|-....- |-..-+++.|+.+|..-.+.+
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 355555555555555555555555665555542 3333333322221 222223555555555555543
No 325
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.86 E-value=99 Score=33.23 Aligned_cols=144 Identities=15% Similarity=0.148 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC
Q 006636 124 NSIHSIMSQVEENGMDPDSIFFNAVINA-----FSESGNMEEAMDTFWKMKE-------SGLTPTTSTYNTLIKGYGIAG 191 (637)
Q Consensus 124 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~-----~~~~g~~~~A~~~~~~m~~-------~~~~~~~~~~~~li~~~~~~g 191 (637)
..+...++...+.| +......+..+ +....+.+.|+..|+.+.+ .| .......+..+|.+..
T Consensus 229 ~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 229 SEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCC
Confidence 45666666666654 23332222222 2234567777777777655 33 2234455555555532
Q ss_pred -----ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c
Q 006636 192 -----KPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCN-EKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQ----N 261 (637)
Q Consensus 192 -----~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~ 261 (637)
+.+.|..++......| .|+.......+..... ..+...|.++|...-+.|. ...+..+..+|.. .
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVE 377 (552)
T ss_pred CCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcC
Confidence 4455777776666655 2333332222222222 2355677777777666652 2222223222221 2
Q ss_pred CCHHHHHHHHHHHHhCC
Q 006636 262 GEADQAEEVIVEMEHNG 278 (637)
Q Consensus 262 g~~~~A~~~~~~~~~~~ 278 (637)
.+.+.|..++.+..+.|
T Consensus 378 r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG 394 (552)
T ss_pred CCHHHHHHHHHHHHHcc
Confidence 34566666666666655
No 326
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=78.56 E-value=1.1e+02 Score=33.46 Aligned_cols=222 Identities=12% Similarity=0.072 Sum_probs=90.0
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-------hhHHHHHHHHHHHCCCCCCHH
Q 006636 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKR-------FNSIHSIMSQVEENGMDPDSI 143 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~ 143 (637)
+...|. +|=.+.|+|++++|.++...... ........+...+..+....+ -+.....|++..+.....|++
T Consensus 111 ~~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 111 GDPIWA-LIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp TEEHHH-HHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CCccHH-HHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 334554 45667899999999998855443 234445567777877766432 245566666665543322443
Q ss_pred ---HHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------ChHHHHHHHHHHHhcCCCC
Q 006636 144 ---FFNAVINAFSESGNMEEAM-DTFWKMKESGLTPTTSTYNTLIKGYGIAG---------KPEESVKLLDLMSREGNVK 210 (637)
Q Consensus 144 ---~~~~ll~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g---------~~~~A~~~~~~m~~~~~~~ 210 (637)
+|..+ .++.-...-. .+...+ +.+.|--|.-.-.... .++.-...+.+.-+.. +.
T Consensus 189 K~AvY~il----g~cD~~~~~~~~V~~ti-------ED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~-F~ 256 (613)
T PF04097_consen 189 KRAVYKIL----GRCDLSRRHLPEVARTI-------EDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESH-FN 256 (613)
T ss_dssp HHHHHHHH----HT--CCC-S-TTC--SH-------HHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGG-CT
T ss_pred HHHHHHHH----hcCCccccchHHHhCcH-------HHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhh-cc
Confidence 22222 1211100000 111100 1122222221111110 0111122222222211 22
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCChhhHHHH
Q 006636 211 PNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGV-QPNGRTCGII 289 (637)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l 289 (637)
+ ..........+.-.|+++.|++.+-+. .+...+.+++...+..| |-+......-..+..... .|...-+..|
T Consensus 257 ~-~~~p~~Yf~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIaL~~~---gLL~~~~~~~~~lls~~~~~~~~ln~arL 330 (613)
T PF04097_consen 257 A-GSNPLLYFQVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIALAYY---GLLRVSDSSSAPLLSVDPGDPPPLNFARL 330 (613)
T ss_dssp T-------HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT---T------------------------HHHH
T ss_pred c-chhHHHHHHHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHHHHHc---CCCCCCCccccceeeecCCCCCCcCHHHH
Confidence 2 111223345556789999999988761 22234555554444333 222222111122222110 1112557778
Q ss_pred HHHHHh---cCCHHHHHHHHHHHHHC
Q 006636 290 ISGYCK---EGKIKEALRFARTMKEY 312 (637)
Q Consensus 290 i~~~~~---~g~~~~A~~~~~~~~~~ 312 (637)
|..|.+ ..+..+|+++|--+...
T Consensus 331 I~~Y~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 331 IGQYTRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp HHHHHHTTTTT-HHHHHHHHHGGGGS
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHc
Confidence 888887 45788898888777654
No 327
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=78.16 E-value=81 Score=31.86 Aligned_cols=72 Identities=11% Similarity=0.237 Sum_probs=38.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006636 357 STIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGW 433 (637)
Q Consensus 357 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 433 (637)
..|+.-|...|++.+|.+..+++--- +-....++.+++.+..+.|+-...+.++++.-+.| ..|-+.|-.+|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQMtkGf 584 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQMTKGF 584 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHHhhhhh
Confidence 44556666666666666666554211 11234556666666666666665556665554433 34444444444
No 328
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=77.92 E-value=7.1 Score=22.90 Aligned_cols=28 Identities=18% Similarity=0.139 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006636 495 TFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 495 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
.|..+...+...|++++|...+++....
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4555666666666666666666665443
No 329
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.76 E-value=51 Score=29.30 Aligned_cols=89 Identities=16% Similarity=0.081 Sum_probs=49.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 006636 220 VRAWCNEKNITEAWNVMHKMAASGMKPDV----VTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCK 295 (637)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 295 (637)
...+...+++++|...++..+.. +.|. ..--.|.+.....|.+|+|+..++.....+. .......-.+.+..
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ--TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 34556667777777776665542 1121 1112344556666777777777666544322 22223334566666
Q ss_pred cCCHHHHHHHHHHHHHC
Q 006636 296 EGKIKEALRFARTMKEY 312 (637)
Q Consensus 296 ~g~~~~A~~~~~~~~~~ 312 (637)
.|+-++|+.-|.+....
T Consensus 172 kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 172 KGDKQEARAAYEKALES 188 (207)
T ss_pred cCchHHHHHHHHHHHHc
Confidence 77777777777766654
No 330
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=77.45 E-value=17 Score=34.94 Aligned_cols=89 Identities=13% Similarity=0.064 Sum_probs=43.5
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006636 361 NAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMD 440 (637)
Q Consensus 361 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 440 (637)
.-|.+.|.+++|+..|....... +-+++.+..-..+|.+...+..|..--...+..+ ..-...|..-+.+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 44566666666666666555431 1255556556666666666666655555554331 111222333333333334444
Q ss_pred HHHHHHHHHHH
Q 006636 441 RAIEVFDKMCE 451 (637)
Q Consensus 441 ~A~~~~~~m~~ 451 (637)
+|.+-++..++
T Consensus 183 EAKkD~E~vL~ 193 (536)
T KOG4648|consen 183 EAKKDCETVLA 193 (536)
T ss_pred HHHHhHHHHHh
Confidence 44444444444
No 331
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=77.38 E-value=12 Score=28.98 Aligned_cols=41 Identities=10% Similarity=0.148 Sum_probs=16.4
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006636 165 FWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSR 205 (637)
Q Consensus 165 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 205 (637)
+..+...++.|++.+..+.+++|-+.+++..|+++|+.+..
T Consensus 33 lN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 33 LNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444443
No 332
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=76.82 E-value=1.2e+02 Score=33.11 Aligned_cols=439 Identities=10% Similarity=0.074 Sum_probs=214.0
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHH-CCCCC--CHHHHHHHHHHHH-hcCChhHHHHHHHHHHHCCCCCCHH--
Q 006636 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIE-GGHKP--SLVTYTTLLAALT-IQKRFNSIHSIMSQVEENGMDPDSI-- 143 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~--~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-- 143 (637)
..+..|-.||.. |++.++.+.+ ...+| ...++..+...+. ...+++.|...+.+.....-.++..
T Consensus 28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 344555555544 4555666663 22333 3345556666665 5678899999998875543222221
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHhcCC--CCCCH
Q 006636 144 ---FFNAVINAFSESGNMEEAMDTFWKMKESG----LTPTTSTYNTL-IKGYGIAGKPEESVKLLDLMSREGN--VKPNL 213 (637)
Q Consensus 144 ---~~~~ll~~~~~~g~~~~A~~~~~~m~~~~----~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~ 213 (637)
....++..+.+.+... |....++.++.- ..+-...+..+ +..+...++...|.+.++.+..... ..|-.
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 2234456665655554 888888766531 11112222333 3333334789999999988876432 12334
Q ss_pred HHHHHHHHHHH--hcCCHHHHHHHHHHHHHCC---------CCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHh----
Q 006636 214 RTYNVLVRAWC--NEKNITEAWNVMHKMAASG---------MKPDVVTYNTIATAYA--QNGEADQAEEVIVEMEH---- 276 (637)
Q Consensus 214 ~~~~~li~~~~--~~g~~~~A~~~~~~~~~~g---------~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~---- 276 (637)
.++-.++.+.. ..+..+++.+.++++.... ..|-..+|..+++.++ ..|+++.+...++++..
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~ 257 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDE 257 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 44444444443 4565677777777664321 1234566766666554 56776677666655432
Q ss_pred ---CC-C---C-------------------CChhhH---------HHHHHH--HHhcCCHHHHHHH-------HHHHH-H
Q 006636 277 ---NG-V---Q-------------------PNGRTC---------GIIISG--YCKEGKIKEALRF-------ARTMK-E 311 (637)
Q Consensus 277 ---~~-~---~-------------------~~~~~~---------~~li~~--~~~~g~~~~A~~~-------~~~~~-~ 311 (637)
.. . . +....| .-++++ ++..+..++|.++ .++.. .
T Consensus 258 ~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~ 337 (608)
T PF10345_consen 258 IKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIK 337 (608)
T ss_pred hhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhcc
Confidence 10 0 0 111111 111222 2233444345444 44444 1
Q ss_pred CCCCCC--------HHHHHHHHHH---------HHHcCCHhhHHHHHHHHhhCCC-CCC-------HHHHHHHHHHHHHc
Q 006636 312 YGVHPN--------LVIFNLLIKG---------FVEIMDRDGVDEVLALMKEFRV-NPD-------VITYSTIMNAWSTA 366 (637)
Q Consensus 312 ~~~~~~--------~~~~~~ll~~---------~~~~~~~~~a~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~ 366 (637)
....+. ...|...+.. ..-.+++..+...++.+.+... .|+ +.++....-.+...
T Consensus 338 ~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~ 417 (608)
T PF10345_consen 338 SPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQST 417 (608)
T ss_pred CCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHc
Confidence 111111 1222222222 2245778888888888765321 111 22233333344567
Q ss_pred CChhHHHHHHH--------HHHHCCCCCCHHHHHHH--HHHHHHcC--CHHH--HHHHHHHHHHC---CCCCCHHHHHHH
Q 006636 367 GFMDKCKEIFD--------DMGKAGIKPDAHAYSIL--AKGYVREQ--EPEK--AEELLMTMIES---GFHPNVVIFTTI 429 (637)
Q Consensus 367 g~~~~a~~~~~--------~~~~~~~~~~~~~~~~l--~~~~~~~g--~~~~--A~~~~~~~~~~---~~~~~~~~~~~l 429 (637)
|+++.|...|. .....+...+..++..| +..+...+ ..++ +.++++.+... ....+..++..+
T Consensus 418 g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~ 497 (608)
T PF10345_consen 418 GDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCL 497 (608)
T ss_pred CCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHH
Confidence 99999999998 44444444444444332 22222222 2223 66677665432 112233444444
Q ss_pred H-HHHHhcC--CHHHHHHHHHHHHH-C--CCCCCHH---HHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCC--HHHH-
Q 006636 430 I-SGWCSDG--SMDRAIEVFDKMCE-H--GVSPNLK---TFETLMWGYSEARQPWRAEEILQIMKA-FGVHPQ--KSTF- 496 (637)
Q Consensus 430 i-~~~~~~g--~~~~A~~~~~~m~~-~--~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~p~--~~~~- 496 (637)
+ .++...- ...++...+.+..+ . ....+.. +++.+...+. .|...|.......... ..-.|| ...|
T Consensus 498 ~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~ 576 (608)
T PF10345_consen 498 VLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWH 576 (608)
T ss_pred HHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 3 3333211 12344444433321 1 1111222 2222222333 6777776555443321 111233 2244
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHHHH
Q 006636 497 ----LLLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 497 ----~~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
..+.+.+...|+.++|.....+.
T Consensus 577 ~v~~~~l~~~~~~~G~~~ka~~~~~~~ 603 (608)
T PF10345_consen 577 LVASGMLADSYEVQGDRDKAEEARQQL 603 (608)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 23445688899999999887765
No 333
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=76.80 E-value=4.9 Score=23.29 Aligned_cols=28 Identities=18% Similarity=0.122 Sum_probs=18.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhhc
Q 006636 497 LLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 497 ~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
-.++.++.+.|+.++|.+.++++....|
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3455666667777777777777665544
No 334
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=75.80 E-value=32 Score=36.93 Aligned_cols=176 Identities=17% Similarity=0.223 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCC
Q 006636 354 ITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHA----------YSILAKGYVREQEPEKAEELLMTMIES--GFHP 421 (637)
Q Consensus 354 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~ 421 (637)
.+...++-.|....+++..+++.+.+.+. ||..- |.-.++---+-|+-++|+.+.-.+.+. .+.|
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 34445555566666666666666666542 32111 111111112446666676666666543 2344
Q ss_pred CHHH-----HHHH--HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCH
Q 006636 422 NVVI-----FTTI--ISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQ-PWRAEEILQIMKAFGVHPQK 493 (637)
Q Consensus 422 ~~~~-----~~~l--i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~g~~p~~ 493 (637)
|... |.-+ -+.|...+..+.|.+.|++..+ +.|+...-..+...+..+|. ++...+ |..-|+
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~Fens~E----lq~Igm---- 348 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEHFENSLE----LQQIGM---- 348 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhhccchHH----HHHHHH----
Confidence 4332 2111 1234456677888899998877 56776543333333444442 222211 222111
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccccccccccchHHHHHHHHhhhc
Q 006636 494 STFLLLAEARRATGLTKEAKRILSKIKNKERTNEMEAEEDIPVESLERLYHKEA 547 (637)
Q Consensus 494 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~a~~~~e~~~~~~~ 547 (637)
.+..++++.|.++.-.++++-.--... ...-.+...+.+++|.++++.|
T Consensus 349 ----kLn~LlgrKG~leklq~YWdV~~y~~a-sVLAnd~~kaiqAae~mfKLk~ 397 (1226)
T KOG4279|consen 349 ----KLNSLLGRKGALEKLQEYWDVATYFEA-SVLANDYQKAIQAAEMMFKLKP 397 (1226)
T ss_pred ----HHHHHhhccchHHHHHHHHhHHHhhhh-hhhccCHHHHHHHHHHHhccCC
Confidence 244556788877777766655421111 1122456778888888887654
No 335
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=74.63 E-value=67 Score=29.58 Aligned_cols=80 Identities=18% Similarity=0.137 Sum_probs=35.3
Q ss_pred cCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHH
Q 006636 366 AGFMDKCKEIFDDMGKAGIKPDA-HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVV-IFTTIISGWCSDGSMDRAI 443 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~ 443 (637)
...++.|+..|.+.+.. .|+. .-|+.-+..+.+..+++.+..--++..+. .||.+ ..--+..+......+++|+
T Consensus 23 ~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred hhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHHH
Confidence 34455555544444443 2333 22333444445555555555444444443 33332 2222333344444555555
Q ss_pred HHHHHH
Q 006636 444 EVFDKM 449 (637)
Q Consensus 444 ~~~~~m 449 (637)
..+.+.
T Consensus 99 ~~Lqra 104 (284)
T KOG4642|consen 99 KVLQRA 104 (284)
T ss_pred HHHHHH
Confidence 555554
No 336
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.24 E-value=1.4e+02 Score=32.65 Aligned_cols=102 Identities=12% Similarity=0.131 Sum_probs=64.3
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006636 79 MNSLIERGKPQEAQAIFNNLIEGGHKP---SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSES 155 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 155 (637)
++.+.+.+.+++|+++-+.... ..| -...+...|..+...|+++.|-...-.|.. .+..-|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 7788899999999988776653 333 234567778888888899888887776653 3445555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006636 156 GNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI 189 (637)
Q Consensus 156 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 189 (637)
++... ++.-++......+..+|..++..+..
T Consensus 437 ~~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccch---hhccCCCCCcccCchHHHHHHHHHHH
Confidence 54432 22333332223455667777766655
No 337
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=73.86 E-value=2.5e+02 Score=35.32 Aligned_cols=322 Identities=10% Similarity=0.035 Sum_probs=167.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHH-HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006636 77 KLMNSLIERGKPQEAQAIFNNLIEGGH-KPSLVTYTTLL-AALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE 154 (637)
Q Consensus 77 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 154 (637)
.|..+-.+++.+.+|+..++.-..... ..-...+..++ ..|+..++++....+...-.. .|+ .+ .-|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HH-HHHHHHHh
Confidence 455666788999999999988411101 11122334444 489999999988877664111 222 22 23445667
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHH-HHHHHhcCCHHHHH
Q 006636 155 SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVL-VRAWCNEKNITEAW 233 (637)
Q Consensus 155 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~ 233 (637)
.|++..|...|+.+.+.+.+ ....++.++..-...|.++..+...+...... .+....|+++ +.+--+.++++...
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~--se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR--SEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhcc--CHHHHHHHHHHHHHHhhhcchhhhh
Confidence 89999999999999987633 46677777776667888888888777666542 3444455544 34446778888777
Q ss_pred HHHHHHHHCCCCCCHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHhC--------CCC-CChhhHHHHHHHHHhcCCHH
Q 006636 234 NVMHKMAASGMKPDVVTYNTI--ATAYAQNG--EADQAEEVIVEMEHN--------GVQ-PNGRTCGIIISGYCKEGKIK 300 (637)
Q Consensus 234 ~~~~~~~~~g~~~~~~~~~~l--i~~~~~~g--~~~~A~~~~~~~~~~--------~~~-~~~~~~~~li~~~~~~g~~~ 300 (637)
..+. .. +..+|... +....+.. +.-.-.+..+.+.+. +.. .-...|..++....-..- +
T Consensus 1539 ~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el-~ 1610 (2382)
T KOG0890|consen 1539 SYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL-E 1610 (2382)
T ss_pred hhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH-H
Confidence 6655 11 22333322 22222221 111111122222211 110 001223333222211110 0
Q ss_pred HHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHH-HhhCCCC-----CCHHHHHHHHHHHHHcCChhHHH
Q 006636 301 EALRFARTM-KEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLAL-MKEFRVN-----PDVITYSTIMNAWSTAGFMDKCK 373 (637)
Q Consensus 301 ~A~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~ 373 (637)
.-.+..... .......+...|..-+..-....+..+-+-.++. +...... --..+|..........|+++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 000111000 0000111222233333222111122222212221 1111111 12456777888888899999888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006636 374 EIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESG 418 (637)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 418 (637)
..+-...+.+ -+..+--.+...-..|+...|+.++++..+..
T Consensus 1691 nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1691 NALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 7776666554 33455566677788899999999998887543
No 338
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=73.57 E-value=5.3 Score=22.03 Aligned_cols=21 Identities=29% Similarity=0.621 Sum_probs=13.5
Q ss_pred HHHHHHHHHcCChhHHHHHHH
Q 006636 76 TKLMNSLIERGKPQEAQAIFN 96 (637)
Q Consensus 76 ~~l~~~~~~~g~~~~A~~~~~ 96 (637)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345666667777777766654
No 339
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=73.55 E-value=58 Score=33.25 Aligned_cols=109 Identities=17% Similarity=0.109 Sum_probs=71.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHH---CCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCCC---
Q 006636 396 KGYVREQEPEKAEELLMTMIE---SGFHPN-----VVIFTTIISGWCSDGSMDRAIEVFDKMCE-------HGVSPN--- 457 (637)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~p~--- 457 (637)
+.+.-.|++.+|.+++...-- .|...+ -..||.|...+.+.|.+.-+..+|.++.+ .|++|.
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 345567888888888765321 121111 23457777777788888888888877763 355543
Q ss_pred --------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006636 458 --------LKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRAT 506 (637)
Q Consensus 458 --------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 506 (637)
..+|+. .-.|.+.|++-.|.+.|.+...- +..++..|..|..+|..+
T Consensus 328 tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 328 TLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred ehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 223443 44678999999999999887531 344667888888887644
No 340
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=73.30 E-value=6.6 Score=22.72 Aligned_cols=19 Identities=32% Similarity=0.543 Sum_probs=7.9
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 006636 432 GWCSDGSMDRAIEVFDKMC 450 (637)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~ 450 (637)
++.+.|++++|.+.|++++
T Consensus 9 ~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHH
Confidence 3333444444444444443
No 341
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=73.28 E-value=1e+02 Score=30.61 Aligned_cols=64 Identities=6% Similarity=-0.087 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006636 318 LVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNP---DVITYSTIMNAWSTAGFMDKCKEIFDDMGK 381 (637)
Q Consensus 318 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 381 (637)
..+|..++..+.+.|.++.|...+..+...+... ++...-.-+......|+..+|+..++...+
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555566666666666666655554432111 122222233344455555666665555554
No 342
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=72.54 E-value=8.3 Score=24.73 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=19.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCC
Q 006636 78 LMNSLIERGKPQEAQAIFNNLIEGG 102 (637)
Q Consensus 78 l~~~~~~~g~~~~A~~~~~~~~~~~ 102 (637)
|..+|...|+.+.|+.+++++...|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 6778888888888888888887643
No 343
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.50 E-value=85 Score=29.37 Aligned_cols=91 Identities=12% Similarity=0.213 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCC-------HHHHHHHHHHHHHcCCHhhHHHHHHHHhhCC-CCCCHH
Q 006636 287 GIIISGYCKEGKIKEALRFARTMKEYGV----HPN-------LVIFNLLIKGFVEIMDRDGVDEVLALMKEFR-VNPDVI 354 (637)
Q Consensus 287 ~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~ 354 (637)
+.|...|...+.+..-.++++++..... ..| ...|..-++.|....+-.....++++..... .-|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 4566677777777777777777654311 111 2356666677777666666677777654321 123443
Q ss_pred HHHHHHHH-----HHHcCChhHHHHHHHH
Q 006636 355 TYSTIMNA-----WSTAGFMDKCKEIFDD 378 (637)
Q Consensus 355 ~~~~l~~~-----~~~~g~~~~a~~~~~~ 378 (637)
+.. +|.- ..+.|.+++|-.-|-+
T Consensus 229 ImG-vIRECGGKMHlreg~fe~AhTDFFE 256 (440)
T KOG1464|consen 229 IMG-VIRECGGKMHLREGEFEKAHTDFFE 256 (440)
T ss_pred HHh-HHHHcCCccccccchHHHHHhHHHH
Confidence 333 2222 3455667766544333
No 344
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=71.77 E-value=31 Score=31.15 Aligned_cols=76 Identities=14% Similarity=0.042 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHH
Q 006636 356 YSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESG--FHPNVVIFTTIISG 432 (637)
Q Consensus 356 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~ 432 (637)
.+..++.+.+.+.+.+++...+.-++.. +.|...-..+++.|+-.|+|++|..-++-.-+.. ..+-..+|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3445566667777778877777766653 4466667777777888888888776666554431 12334455555543
No 345
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=71.66 E-value=0.96 Score=38.34 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=21.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006636 433 WCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQ 482 (637)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 482 (637)
+.+.+.......+++.+...+..-+....+.++..|.+.+..++..++++
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 17 FEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33344444444444444433323334444444444444444444444443
No 346
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=71.65 E-value=1.3e+02 Score=31.15 Aligned_cols=165 Identities=13% Similarity=0.161 Sum_probs=87.4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHH
Q 006636 281 PNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIM 360 (637)
Q Consensus 281 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 360 (637)
.|.....+++..+..+....-...+..+|...| .+-..+..+++.|... ..+....+++.+.+.... |++.-..|+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 355556666677766666666667777776653 4555666667766666 445566666666665432 344444444
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 006636 361 NAWSTAGFMDKCKEIFDDMGKAGIKP-----DAHAYSILAKGYVREQEPEKAEELLMTMIE-SGFHPNVVIFTTIISGWC 434 (637)
Q Consensus 361 ~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~ 434 (637)
..|.+ ++.+.+...|.++..+-++. -..+|.-|... -..+.+.-+.+..++.. .|...-.+.+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 44444 66666666666655432110 01233333321 13344444444444443 222233344444445555
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 006636 435 SDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~ 452 (637)
...++++|++++..+.++
T Consensus 217 ~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 217 ENENWTEAIRILKHILEH 234 (711)
T ss_pred cccCHHHHHHHHHHHhhh
Confidence 566666666666666554
No 347
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.58 E-value=74 Score=28.31 Aligned_cols=88 Identities=16% Similarity=0.144 Sum_probs=44.5
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006636 361 NAWSTAGFMDKCKEIFDDMGKAGIKPDAHAY-----SILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS 435 (637)
Q Consensus 361 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 435 (637)
..+...+++++|...++..... |....+ -.|.......|.+++|+..++.....++ .......-...+..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 3455566666666666655542 111112 2233444556666666666665543321 12223333445666
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 006636 436 DGSMDRAIEVFDKMCEHG 453 (637)
Q Consensus 436 ~g~~~~A~~~~~~m~~~~ 453 (637)
.|+-++|..-|++..+.+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 666666666666666543
No 348
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=70.86 E-value=64 Score=27.28 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=30.6
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006636 400 REQEPEKAEELLMTMIESGFHPNVV-IFTTIISGWCSDGSMDRAIEVFDKMCEHG 453 (637)
Q Consensus 400 ~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 453 (637)
..++.+++..++..|.-. .|+.. .-..-...+...|++.+|+++|++..+.+
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 466777777777776654 33322 11222334567777777777777776643
No 349
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=70.09 E-value=1e+02 Score=29.37 Aligned_cols=63 Identities=10% Similarity=-0.024 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 006636 245 KPDVVTYNTIATAYAQNGEADQAEEVIVEMEHN-GVQPNGRTCGIIISGYCKEGKIKEALRFAR 307 (637)
Q Consensus 245 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 307 (637)
.++..+...++..++..+++..-.++++..... +...|...|..+|....+.|+..-..++.+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 455555666666666677777666666665443 444566667777777777776655555544
No 350
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=69.57 E-value=92 Score=29.46 Aligned_cols=53 Identities=13% Similarity=0.197 Sum_probs=37.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHHhcCChhHHHHH
Q 006636 77 KLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVT-------YTTLLAALTIQKRFNSIHSI 129 (637)
Q Consensus 77 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------~~~ll~~~~~~~~~~~a~~~ 129 (637)
.+.+...+..++++|+..+.+++..|+..+..+ ...+...|...|+.....+.
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~ 67 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDT 67 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 467778889999999999999998887666544 34455666666665544433
No 351
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=69.41 E-value=1.9e+02 Score=32.22 Aligned_cols=226 Identities=13% Similarity=0.041 Sum_probs=112.8
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCChh-------hHHHHHH-HHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 006636 258 YAQNGEADQAEEVIVEMEHNGVQPNGR-------TCGIIIS-GYCKEGKIKEALRFARTMKEY----GVHPNLVIFNLLI 325 (637)
Q Consensus 258 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~li~-~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~ll 325 (637)
.....++++|..++.++...-..|+.. .++.+-. .....|++++|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345678888888888876542222221 2333322 233467888888877776543 2234555666777
Q ss_pred HHHHHcCCHhhHHHHHHHHhhCCCCCCHHHH---HHH--HHHHHHcCChh--HHHHHHHHHHHC---CCC---CCHHHHH
Q 006636 326 KGFVEIMDRDGVDEVLALMKEFRVNPDVITY---STI--MNAWSTAGFMD--KCKEIFDDMGKA---GIK---PDAHAYS 392 (637)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l--~~~~~~~g~~~--~a~~~~~~~~~~---~~~---~~~~~~~ 392 (637)
.+..-.|+++.|..+..+..+..-..+...+ ..+ ...+...|... +....|...... ..+ +-.-++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 7777788888888877766543222233322 222 12345566322 222233322211 001 1123344
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHH
Q 006636 393 ILAKGYVRE-QEPEKAEELLMTMIESGFHPNVVIF--TTIISGWCSDGSMDRAIEVFDKMCEHG----VSPNLKTFETLM 465 (637)
Q Consensus 393 ~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~~~~~l~ 465 (637)
.+..++.+. +...++..-+.--......|-.... ..|+..+...|+.++|...++++.... ..++..+-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 444455441 1222222222222222111111112 256677778899999999888887542 233333333333
Q ss_pred HHH--HhcCChhHHHHHHHH
Q 006636 466 WGY--SEARQPWRAEEILQI 483 (637)
Q Consensus 466 ~~~--~~~g~~~~A~~~~~~ 483 (637)
... ...|+..++.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 322 235666666555444
No 352
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=69.10 E-value=70 Score=27.00 Aligned_cols=82 Identities=10% Similarity=0.130 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHH
Q 006636 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHG-----VSPNLKTFETLMWGYSEARQ-PWRAEEILQIMKAFGVHPQKSTFLL 498 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ 498 (637)
..+.++.-.+..+++.-.+.+++.+.-.. -..+...|..++.+.+...- .--+..+|+-|.+.+.+++...|.+
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34566665566666666666666653210 01245567788887766655 3446777888877778888888888
Q ss_pred HHHHHHHc
Q 006636 499 LAEARRAT 506 (637)
Q Consensus 499 l~~~~~~~ 506 (637)
++.++.+-
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 88877654
No 353
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=67.07 E-value=24 Score=28.61 Aligned_cols=47 Identities=23% Similarity=0.213 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006636 476 RAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 476 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
|..+-++.+..+.+.|++......+.+|.|.+++.-|.++++-++-+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 44555666677889999999999999999999999999999988755
No 354
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=66.92 E-value=14 Score=23.71 Aligned_cols=23 Identities=43% Similarity=0.614 Sum_probs=11.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 006636 394 LAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
|..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555555555443
No 355
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=65.49 E-value=50 Score=29.89 Aligned_cols=72 Identities=8% Similarity=0.105 Sum_probs=38.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHH
Q 006636 395 AKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHG--VSPNLKTFETLMWG 467 (637)
Q Consensus 395 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~~ 467 (637)
+..+.+.+++.+|+...++-++.. +.|...-..++..++-.|++++|..-++-..... ..+-..+|..++.+
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 444555566666666666555543 4445555556666666666666666555544321 12233455555543
No 356
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=65.19 E-value=24 Score=25.98 Aligned_cols=48 Identities=10% Similarity=-0.069 Sum_probs=28.3
Q ss_pred hcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHH
Q 006636 470 EARQPWRAEEILQIMKAFGVHPQ--KSTFLLLAEARRATGLTKEAKRILS 517 (637)
Q Consensus 470 ~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~eA~~~~~ 517 (637)
+..+.++|+..|+...+.-..|. ..++.+++.+++..|++.+++++..
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777766654222222 2256667777777777777666643
No 357
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=63.59 E-value=1.1e+02 Score=28.94 Aligned_cols=87 Identities=14% Similarity=0.033 Sum_probs=38.7
Q ss_pred HHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----
Q 006636 325 IKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVR---- 400 (637)
Q Consensus 325 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 400 (637)
|++++..+++.++....-+--+..-+....+...-|-.|.+.+.+..+.++-..-....-.-+..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4445555555554433222211111122333333444455666666655555554443112223335555554433
Q ss_pred -cCCHHHHHHHH
Q 006636 401 -EQEPEKAEELL 411 (637)
Q Consensus 401 -~g~~~~A~~~~ 411 (637)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 46666665555
No 358
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=62.52 E-value=1.6e+02 Score=28.92 Aligned_cols=80 Identities=9% Similarity=0.019 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHH
Q 006636 369 MDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS---DGSMDRAIEV 445 (637)
Q Consensus 369 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~ 445 (637)
.+.-+.++++.++.+ +.+......++..+.+..+.++..+-++++.... +-+...|...+..... .-.+.....+
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 344556666666653 3456666667777777777777777777777653 4466777776665443 2235555555
Q ss_pred HHHHH
Q 006636 446 FDKMC 450 (637)
Q Consensus 446 ~~~m~ 450 (637)
|.+.+
T Consensus 125 y~~~l 129 (321)
T PF08424_consen 125 YEKCL 129 (321)
T ss_pred HHHHH
Confidence 55443
No 359
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=62.40 E-value=75 Score=26.35 Aligned_cols=70 Identities=16% Similarity=0.211 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc
Q 006636 455 SPNLKTFETLMWGYSEARQ---PWRAEEILQIMKAFGVHPQ--KSTFLLLAEARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 455 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
.+...+-..+..++.++.+ +.+++.+++...+ .-.|+ .+..--+.-.+.|.++++.+.++++.+.+..|+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~-~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK-SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh-hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 4566666677777777654 4567777777764 12222 222223444577888888888888888776654
No 360
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=62.06 E-value=4.2e+02 Score=33.51 Aligned_cols=322 Identities=13% Similarity=0.047 Sum_probs=147.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006636 182 TLIKGYGIAGKPEESVKLLDLMSREGNVKP-NLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQ 260 (637)
Q Consensus 182 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 260 (637)
.+..+-.+++.+..|+..++.-.....-.. ....+..+...|...+++|....+...-.. .|+ ...-|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHHh
Confidence 344455567777777777776311110001 122233334477777777776666653111 122 2224445566
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHhhHHH
Q 006636 261 NGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLL-IKGFVEIMDRDGVDE 339 (637)
Q Consensus 261 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~ 339 (637)
.|++..|...|+.+.+.+. +....++-++..-...|.++..+-..+...... .+....|+.+ +.+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 7888888888888776643 235556666666566667666666555544331 2222333332 222244555555444
Q ss_pred HHHHHhhCCCCCCHHHHHHH--HHHHHHcCChh--HHHHHHHHHHHC--------CCC-CCHHHHHHHHHHHHHcCCHHH
Q 006636 340 VLALMKEFRVNPDVITYSTI--MNAWSTAGFMD--KCKEIFDDMGKA--------GIK-PDAHAYSILAKGYVREQEPEK 406 (637)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~--~a~~~~~~~~~~--------~~~-~~~~~~~~l~~~~~~~g~~~~ 406 (637)
.+. .. +..+|... .....+...-+ .-....+.+.+. +.. .-...|..++....-+.--..
T Consensus 1540 ~l~--~~-----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~ 1612 (2382)
T KOG0890|consen 1540 YLS--DR-----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENS 1612 (2382)
T ss_pred hhh--cc-----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 433 11 11122211 11111111100 000111111110 000 001223333332221111111
Q ss_pred HHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHCCCCCC-----HHHHHHHHHHHHhcCChhHHHH
Q 006636 407 AEELLMTMI-ESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKM-CEHGVSPN-----LKTFETLMWGYSEARQPWRAEE 479 (637)
Q Consensus 407 A~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~ 479 (637)
.. .+.... ......+..-|..-+..-....+..+-+--+++. ......|+ ..+|....+.+..+|+.+.|..
T Consensus 1613 ~~-~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1613 IE-ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HH-HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 11 111000 0000111122322222211122222222222222 22211222 3578888998888999999988
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006636 480 ILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 480 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
.+-...+.+ -+..+...+..+...|+-..|..++++..+.
T Consensus 1692 all~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1692 ALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 766555533 3456777888899999999999999998744
No 361
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=60.63 E-value=25 Score=25.84 Aligned_cols=46 Identities=11% Similarity=0.063 Sum_probs=31.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CH-HHHHHHHHHHHhcCChhHHHHH
Q 006636 435 SDGSMDRAIEVFDKMCEHGVSP-NL-KTFETLMWGYSEARQPWRAEEI 480 (637)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~~~~p-~~-~~~~~l~~~~~~~g~~~~A~~~ 480 (637)
...+.++|+..|+..++.-..| +. .++..++.+++..|++.+.+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566788888888887653222 22 2566778888888888777665
No 362
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=60.16 E-value=88 Score=28.60 Aligned_cols=98 Identities=17% Similarity=0.146 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHH--HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 006636 420 HPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSP---NLKTFE--TLMWGYSEARQPWRAEEILQIMKAFGVHPQKS 494 (637)
Q Consensus 420 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 494 (637)
.++..-+|.|+--|.-+..+.+|.+.|.+- .|+.| |..++. .-+......|+.++|++..+.+.-.=+.-|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 455566677777777666677776766543 34444 344443 34667788999999998888763211233332
Q ss_pred HHHHHH----HHHHHcCCHHHHHHHHHHH
Q 006636 495 TFLLLA----EARRATGLTKEAKRILSKI 519 (637)
Q Consensus 495 ~~~~l~----~~~~~~g~~~eA~~~~~~~ 519 (637)
.+..+. -=+.|.|..++|.++.+.-
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 222222 1257889999999998764
No 363
>PRK10941 hypothetical protein; Provisional
Probab=59.14 E-value=1.7e+02 Score=27.93 Aligned_cols=60 Identities=7% Similarity=-0.081 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006636 181 NTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAAS 242 (637)
Q Consensus 181 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 242 (637)
+.+-.+|.+.++++.|+++.+.+.... |.+..-+.--.-.|.+.|.+..|..=++...+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~--P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD--PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 345556666677777777776666643 444555555566666677777666666666543
No 364
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=59.01 E-value=1.7e+02 Score=27.86 Aligned_cols=129 Identities=13% Similarity=0.088 Sum_probs=69.6
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCC-----CCCCHH-------H-HHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 006636 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGG-----HKPSLV-------T-YTTLLAALTIQKRFNSIHSIMSQVEENGM 138 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~-------~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 138 (637)
+.....-...+.-..|+..|+++.++-.+.= ...+.. . ...-|.+++..+++.+++...-+--+.--
T Consensus 35 ~~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pE 114 (309)
T PF07163_consen 35 VSLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPE 114 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcc
Confidence 3334444555666778888888887765420 111111 1 11226777777877776654433322111
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-----cCChHHHHHHH
Q 006636 139 DPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI-----AGKPEESVKLL 200 (637)
Q Consensus 139 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-----~g~~~~A~~~~ 200 (637)
+--..+...-|-.|.+.+++..+.++-..-.+..-..+...|.+++..|.. .|.+++|.++.
T Consensus 115 klPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 115 KLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 112334445555677888877777776665553222233346555555443 57777777666
No 365
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=58.96 E-value=17 Score=19.94 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=9.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 006636 428 TIISGWCSDGSMDRAIEVFDKMC 450 (637)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~ 450 (637)
.+...+...|++++|...|++.+
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 33334444444444444444433
No 366
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=58.92 E-value=1.3e+02 Score=27.54 Aligned_cols=88 Identities=22% Similarity=0.289 Sum_probs=49.1
Q ss_pred hcCCHHHHHHHHHHHHH----CCCCCCHH--HHHHHHHHHHhcCChh-------HHHHHHHHHHHCC---CCC-C-HHHH
Q 006636 435 SDGSMDRAIEVFDKMCE----HGVSPNLK--TFETLMWGYSEARQPW-------RAEEILQIMKAFG---VHP-Q-KSTF 496 (637)
Q Consensus 435 ~~g~~~~A~~~~~~m~~----~~~~p~~~--~~~~l~~~~~~~g~~~-------~A~~~~~~m~~~g---~~p-~-~~~~ 496 (637)
....+++|++.|.-+.- .+.+|... .+..+.+.|...|+.+ .|.+.|++..... ..+ + ....
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 34455566655554431 12233322 3444566666666533 3555555554222 222 1 2234
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006636 497 LLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 497 ~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
-.++.+..|.|+.++|.++|.++...
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 46677888999999999999998655
No 367
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=58.05 E-value=1.8e+02 Score=27.88 Aligned_cols=136 Identities=11% Similarity=0.042 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHh-CCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 006636 229 ITEAWNVMHKMAA-SGMKPDVVTYNTIATAYAQ-NG-EADQAEEVIVEMEH-NGVQPNGRTCGIIISGYCKEGKIKEALR 304 (637)
Q Consensus 229 ~~~A~~~~~~~~~-~g~~~~~~~~~~li~~~~~-~g-~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~ 304 (637)
+.+|+++|+..-. ..+--|..+...+++.... .+ ....--++.+-+.. .+-.++..+...++..+++.+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4455555552211 1233455555555555444 11 12222222233322 2334677788889999999999999999
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHhhHHHHHHH-----HhhCCCCCCHHHHHHHHHHHH
Q 006636 305 FARTMKEY-GVHPNLVIFNLLIKGFVEIMDRDGVDEVLAL-----MKEFRVNPDVITYSTIMNAWS 364 (637)
Q Consensus 305 ~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~~ 364 (637)
++...... +...|...|..++......|+..-...+... +.+.++..+...-..+-..+.
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 98887654 5566888999999999999998877777664 355666767666666555443
No 368
>PRK11619 lytic murein transglycosylase; Provisional
Probab=58.01 E-value=2.9e+02 Score=30.35 Aligned_cols=381 Identities=9% Similarity=0.019 Sum_probs=180.2
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006636 79 MNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNM 158 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 158 (637)
...+.+.+++...+..+.. .+.+...-.....+....|+.++|......+-..| ...+..++.++..+.+.|.+
T Consensus 106 l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 106 VNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred HHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCC
Confidence 3344555565555442111 23455555666777777788777776666665555 44556677777777665543
Q ss_pred HHH--HHHHHHHHHCCCCCCHHHHHHHHHHHH------------hcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH-
Q 006636 159 EEA--MDTFWKMKESGLTPTTSTYNTLIKGYG------------IAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAW- 223 (637)
Q Consensus 159 ~~A--~~~~~~m~~~~~~~~~~~~~~li~~~~------------~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~- 223 (637)
... .+=++.+...| +...-..|...+. -..+...+..++.. ++++...-..++.++
T Consensus 180 t~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~------~~~~~~~~~~~~~~l~ 250 (644)
T PRK11619 180 DPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART------TGPTDFTRQMAAVAFA 250 (644)
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc------cCCChhhHHHHHHHHH
Confidence 322 22222222222 1111122222110 00111111111111 112221111111122
Q ss_pred -HhcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 006636 224 -CNEKNITEAWNVMHKMAASG-MKPD--VVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKI 299 (637)
Q Consensus 224 -~~~g~~~~A~~~~~~~~~~g-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 299 (637)
....+.+.|..++....... ..+. ..++..+.......+...++...++...... .+.....-.+..-...+++
T Consensus 251 Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw 328 (644)
T PRK11619 251 SVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDR 328 (644)
T ss_pred HHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCH
Confidence 13445677888887764332 2221 1233344433333332556666666543322 2333444445555578888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHH-HHHHHH
Q 006636 300 KEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKC-KEIFDD 378 (637)
Q Consensus 300 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~ 378 (637)
+.+...+..|.... .....-..-+..++...|+.++|...|+.+... .+ |-.++.+ .+.|..-.- ......
T Consensus 329 ~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~~---fYG~LAa-~~Lg~~~~~~~~~~~~ 400 (644)
T PRK11619 329 RGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---RG---FYPMVAA-QRLGEEYPLKIDKAPK 400 (644)
T ss_pred HHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC---cHHHHHH-HHcCCCCCCCCCCCCc
Confidence 88888888775432 223334444566666678888888888886431 12 2222221 223321000 000000
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C
Q 006636 379 MGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH-----G 453 (637)
Q Consensus 379 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~ 453 (637)
....+..+. -..-+..+...|....|...+..+... .+......+.......|..+.++......... .
T Consensus 401 -~~~~~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~r 474 (644)
T PRK11619 401 -PDSALTQGP--EMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEER 474 (644)
T ss_pred -hhhhhccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHh
Confidence 000000011 112344556778888888888887764 34445555555566777777777666543221 1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 006636 454 VSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK 493 (637)
Q Consensus 454 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 493 (637)
. |. .|...+..+...-.++.++-+--...+.++.|+.
T Consensus 475 f-p~--~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a 511 (644)
T PRK11619 475 F-PL--AWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKA 511 (644)
T ss_pred C-Cc--chHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCC
Confidence 1 21 3555666666555566555332222355666664
No 369
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=57.98 E-value=25 Score=35.73 Aligned_cols=104 Identities=12% Similarity=0.098 Sum_probs=57.4
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006636 362 AWSTAGFMDKCKEIFDDMGKAGIKPDAHAY-SILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMD 440 (637)
Q Consensus 362 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 440 (637)
-+...+.++.|..++.++++. .|+-..| ..-..++.+.+++..|+.-+.++++.. +.-...|-.=..++...+.+.
T Consensus 13 ~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHHH
Confidence 334556677777777777665 3433333 222356667777777776666666543 222233333334455555566
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006636 441 RAIEVFDKMCEHGVSPNLKTFETLMWGYSE 470 (637)
Q Consensus 441 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 470 (637)
+|+..|+.... +.|+..-+...+.-|..
T Consensus 90 ~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 90 KALLDLEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHhhh--cCcCcHHHHHHHHHHHH
Confidence 66666666555 45666666656555544
No 370
>PRK10941 hypothetical protein; Provisional
Probab=57.60 E-value=1.7e+02 Score=27.81 Aligned_cols=60 Identities=10% Similarity=0.005 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006636 392 SILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 392 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (637)
+.|-.+|.+.++++.|+.+.+.+.... |.++.-+.--+-.|.+.|.+..|..-++..++.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 344455666677777777776666653 445555665666666777777776666666543
No 371
>PRK11619 lytic murein transglycosylase; Provisional
Probab=55.96 E-value=3.1e+02 Score=30.10 Aligned_cols=313 Identities=8% Similarity=0.045 Sum_probs=151.3
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCH
Q 006636 80 NSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEEN-GMDPDSIFFNAVINAFSESGNM 158 (637)
Q Consensus 80 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~ 158 (637)
....+.|++..+.++-..+... .......|..+...+. ...+++....++ +. +.+.....-...+..+.+.+++
T Consensus 41 ~~a~~~g~~~~~~~~~~~l~d~-pL~~yl~y~~L~~~l~-~~~~~ev~~Fl~---~~~~~P~~~~Lr~~~l~~La~~~~w 115 (644)
T PRK11619 41 KQAWDNRQMDVVEQLMPTLKDY-PLYPYLEYRQLTQDLM-NQPAVQVTNFIR---ANPTLPPARSLQSRFVNELARREDW 115 (644)
T ss_pred HHHHHCCCHHHHHHHHHhccCC-CcHhHHHHHHHHhccc-cCCHHHHHHHHH---HCCCCchHHHHHHHHHHHHHHccCH
Confidence 3445778888887777766421 1112223333322211 223444333333 22 1122233344445566677777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH--HHHH
Q 006636 159 EEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEA--WNVM 236 (637)
Q Consensus 159 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A--~~~~ 236 (637)
.....++.. .+.+.........+....|+.++|......+=..|.. .....+.++..+.+.|.+... .+=+
T Consensus 116 ~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~--~p~~cd~l~~~~~~~g~lt~~d~w~R~ 188 (644)
T PRK11619 116 RGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS--LPNACDKLFSVWQQSGKQDPLAYLERI 188 (644)
T ss_pred HHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CChHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 766663311 2346666677778888889988888877777666533 344566666666655544332 2222
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHH------------HcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH--hcCCHHHH
Q 006636 237 HKMAASGMKPDVVTYNTIATAYA------------QNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYC--KEGKIKEA 302 (637)
Q Consensus 237 ~~~~~~g~~~~~~~~~~li~~~~------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A 302 (637)
+.+...| +...-..|..... -..+...+...+.. +.++...-..++-++. ...+.+.|
T Consensus 189 ~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A 260 (644)
T PRK11619 189 RLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFASVARQDAENA 260 (644)
T ss_pred HHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHH
Confidence 2222222 1111111221110 00111111111111 1122211111122222 24456778
Q ss_pred HHHHHHHHHCC-CCCCH--HHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 006636 303 LRFARTMKEYG-VHPNL--VIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDM 379 (637)
Q Consensus 303 ~~~~~~~~~~~-~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 379 (637)
..++....... +.+.. .++..+.......+...++...+....... .+......-+..-...++++.+...+..|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L 338 (644)
T PRK11619 261 RLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARL 338 (644)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhc
Confidence 88887764332 22221 233344333333322445555555443322 23333333444445778888887777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006636 380 GKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMI 415 (637)
Q Consensus 380 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 415 (637)
.... .....-.--+..++...|+.++|...|+.+.
T Consensus 339 ~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 339 PMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred CHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5432 2234445556777777888888888888874
No 372
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=55.24 E-value=14 Score=30.41 Aligned_cols=35 Identities=29% Similarity=0.525 Sum_probs=26.7
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006636 81 SLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAAL 117 (637)
Q Consensus 81 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 117 (637)
.+-..|.-.+|..+|.+|+++|.+||. |+.|+..+
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 344567778899999999999988874 67777654
No 373
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.53 E-value=3.7e+02 Score=30.51 Aligned_cols=57 Identities=23% Similarity=0.299 Sum_probs=33.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH-----HHHHH---HHHhcCChhHHHHHHHHHHH
Q 006636 75 MTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTY-----TTLLA---ALTIQKRFNSIHSIMSQVEE 135 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----~~ll~---~~~~~~~~~~a~~~~~~~~~ 135 (637)
+..-+..+....++++|..+-+.... |++... ..... -+..++++++|...|.++..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~----~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDS----PNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCC----CChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 55556677777778888776655432 333221 11111 13456788888888887653
No 374
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=54.10 E-value=77 Score=33.23 Aligned_cols=102 Identities=8% Similarity=0.009 Sum_probs=61.4
Q ss_pred cCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006636 331 IMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEEL 410 (637)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 410 (637)
.|+...|...+.......+....+....|.....+.|....|-.++.+.+... ...+-++-.+.++|....+.+.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 45666666555444332222222233344555556666777777776665543 33456667777888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHH
Q 006636 411 LMTMIESGFHPNVVIFTTIISGWC 434 (637)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~li~~~~ 434 (637)
|++..+.. +.+.+.-+.|...-|
T Consensus 699 ~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 699 FRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHhcC-CCChhhHHHHHHHHH
Confidence 88877764 556666666655444
No 375
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=54.00 E-value=1e+02 Score=24.00 Aligned_cols=13 Identities=15% Similarity=0.358 Sum_probs=5.5
Q ss_pred hcCCHHHHHHHHH
Q 006636 435 SDGSMDRAIEVFD 447 (637)
Q Consensus 435 ~~g~~~~A~~~~~ 447 (637)
..|++++|..+.+
T Consensus 51 NrG~Yq~Al~l~~ 63 (115)
T TIGR02508 51 NRGDYQSALQLGN 63 (115)
T ss_pred ccchHHHHHHhcC
Confidence 3444444444433
No 376
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=53.90 E-value=2.7e+02 Score=28.78 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=26.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006636 396 KGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWC 434 (637)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 434 (637)
-.|...|++-.|.+.|.+.... +..++..|-.|..+|.
T Consensus 343 ~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 343 LLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred HHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 3456677777777777776654 3567777777777765
No 377
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=53.83 E-value=2.8e+02 Score=28.90 Aligned_cols=181 Identities=13% Similarity=0.108 Sum_probs=123.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006636 245 KPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLL 324 (637)
Q Consensus 245 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 324 (637)
..|.....+++..+..+-.+.-.+.+-.+|...| .+-..+..++.+|... ..+.-..++.++.+..+ .|.+.-..+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence 4466777789999999988888889999998875 3678888999999988 55777888888877642 334444444
Q ss_pred HHHHHHcCCHhhHHHHHHHHhhCCCCC--C---HHHHHHHHHHHHHcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 006636 325 IKGFVEIMDRDGVDEVLALMKEFRVNP--D---VITYSTIMNAWSTAGFMDKCKEIFDDMGK-AGIKPDAHAYSILAKGY 398 (637)
Q Consensus 325 l~~~~~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~ 398 (637)
..-|.+ ++...+...|..+...-++. + ...|.-+... -..+.+.-..+...+.. .|...-...+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 554444 77788888888765532221 1 1234444432 13456666666666654 34444456666677788
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006636 399 VREQEPEKAEELLMTMIESGFHPNVVIFTTIISGW 433 (637)
Q Consensus 399 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 433 (637)
....++.+|++++..+.+.+ ..|.-.-..++.-+
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 88999999999999998875 55665555555543
No 378
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=52.06 E-value=2.2e+02 Score=27.23 Aligned_cols=57 Identities=11% Similarity=0.091 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006636 427 TTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIM 484 (637)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 484 (637)
+.....|..+|.+.+|.++-++.+..+ +.+...+-.|+..+...|+--.+..-++++
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344445556666666666666555532 124445555555666666555555555544
No 379
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=51.99 E-value=1.1e+02 Score=25.01 Aligned_cols=43 Identities=19% Similarity=0.231 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHH
Q 006636 475 WRAEEILQIMKAFGVHPQKS-TFLLLAEARRATGLTKEAKRILS 517 (637)
Q Consensus 475 ~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~ 517 (637)
++..++|+.|...|+.-... .|......+-..|++.+|.++++
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34666777777777765544 56677777778888888887765
No 380
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=51.55 E-value=1.4e+02 Score=31.45 Aligned_cols=149 Identities=9% Similarity=0.013 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 006636 211 PNLRTYNVLVRAWCNE--KNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGI 288 (637)
Q Consensus 211 ~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 288 (637)
|+..+.-.++.-.... ..-+-+-.++..|.. -+.|-..+.|...-.....|+...|...+............+....
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~ 647 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVN 647 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHH
Confidence 4544444444333221 122334444444432 2233333333222223346777777777766554333333445556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006636 289 IISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNA 362 (637)
Q Consensus 289 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 362 (637)
|.....+.|....|..++.+..... ...+.++..+.+++....+.+.|++.|++..+... .+...-+.|...
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~-~~~~~~~~l~~i 719 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT-KCPECENSLKLI 719 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC-CChhhHHHHHHH
Confidence 6677777777777877777776554 44556677777778888888888888888776653 345555555443
No 381
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=51.07 E-value=40 Score=23.55 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=8.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 006636 429 IISGWCSDGSMDRAIEVFDKM 449 (637)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m 449 (637)
+|.+|...|++++|.++.+++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444433
No 382
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=49.92 E-value=1.3e+02 Score=24.69 Aligned_cols=46 Identities=11% Similarity=0.161 Sum_probs=32.7
Q ss_pred hHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006636 336 GVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGK 381 (637)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 381 (637)
+..+.+..+....+.|++......+.+|.+.+++..|..+|+-+..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3445555556666777777777778888888888888888777654
No 383
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=49.64 E-value=1.2e+02 Score=23.60 Aligned_cols=12 Identities=17% Similarity=0.302 Sum_probs=4.7
Q ss_pred hcCCHHHHHHHH
Q 006636 154 ESGNMEEAMDTF 165 (637)
Q Consensus 154 ~~g~~~~A~~~~ 165 (637)
..|++++|..+.
T Consensus 51 NrG~Yq~Al~l~ 62 (115)
T TIGR02508 51 NRGDYQSALQLG 62 (115)
T ss_pred ccchHHHHHHhc
Confidence 334444443333
No 384
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.47 E-value=21 Score=34.47 Aligned_cols=116 Identities=18% Similarity=0.148 Sum_probs=69.0
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHH
Q 006636 400 REQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK-TFETLMWGYSEARQPWRAE 478 (637)
Q Consensus 400 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~ 478 (637)
..|.++.|++.|...+..+ ++....|..-.+++.+.++...|++-+....+. .||.. -|-.-..+-.-.|.+.+|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHH
Confidence 4566777777777777664 555566666666677777777777777776663 34432 2322233334467777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006636 479 EILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 479 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
..|....+.++.+....+ +=.+.-+++..++-.+..++..
T Consensus 203 ~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 203 HDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHH
Confidence 777777776665554433 2233445555555555555544
No 385
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=48.60 E-value=1.2e+02 Score=23.27 Aligned_cols=23 Identities=26% Similarity=0.186 Sum_probs=12.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 006636 183 LIKGYGIAGKPEESVKLLDLMSR 205 (637)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~m~~ 205 (637)
+.......|++++|...+++..+
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444455666666555555543
No 386
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=47.80 E-value=2.8e+02 Score=27.16 Aligned_cols=115 Identities=13% Similarity=0.110 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh------cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhH
Q 006636 404 PEKAEELLMTMIESGFHPNVVIFTTIISGWCS------DGSMDRAIEVFDKMCEHGVSPNLK-TFETLMWGYSEARQPWR 476 (637)
Q Consensus 404 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~------~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~ 476 (637)
++++..++.+....+ .|.+......|.++.. .-+|.....+|+-+.... |+++ +.|- .-+.....-++-
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~a--pSPvV~LNR-AVAla~~~Gp~a 347 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAA--PSPVVTLNR-AVALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhC--CCCeEeehH-HHHHHHhhhHHh
Confidence 566777777777766 4777777777665532 345777777887777643 5554 3332 223444445566
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006636 477 AEEILQIMKAFG-VHPQKSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 477 A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
++...+-+.+.+ +.--...+..-.+.+.+.|+.+||..-|++....
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 666666665432 2211223445678889999999999999888655
No 387
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=47.12 E-value=4e+02 Score=28.77 Aligned_cols=77 Identities=12% Similarity=0.122 Sum_probs=31.0
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006636 338 DEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
....+.+...-+-.+.....-++..|.+.|-.+.+..+.+.+-.+-. ...-|-.-+..+.++|+......+...+.+
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444443332333455556677777777777777777776544321 223455555666777777766666655553
No 388
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=46.53 E-value=92 Score=27.84 Aligned_cols=31 Identities=13% Similarity=0.223 Sum_probs=16.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006636 455 SPNLKTFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 455 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
.|++.+|..++.++...|+.++|.+..+++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455555555555555555555555555444
No 389
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=46.50 E-value=75 Score=20.77 Aligned_cols=32 Identities=6% Similarity=0.000 Sum_probs=17.5
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006636 469 SEARQPWRAEEILQIMKAFGVHPQKSTFLLLA 500 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 500 (637)
.+.|...++..++++|.+.|+..+...|..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34555555555666665555555555554443
No 390
>COG3825 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.28 E-value=87 Score=29.86 Aligned_cols=132 Identities=14% Similarity=0.181 Sum_probs=66.6
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhh
Q 006636 444 EVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRA--TGLTKEAKRILSKIKN 521 (637)
Q Consensus 444 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~--~g~~~eA~~~~~~~~~ 521 (637)
.+|.++....+.-+...|..|+.++-+ +-.+--++.|..+.+.-+.||..++..+-.+++. .| ++.+.+
T Consensus 4 ~ff~~lr~A~vpvs~re~llL~egl~~-~v~~~~ld~Fy~LaraaLvkde~~ldkfd~~fg~~fkG--------~E~l~d 74 (393)
T COG3825 4 CFFNELRAARVPVSVREYLLLLEGLKQ-TVVEYDLDLFYYLARAALVKDERHLDKFDQAFGAYFKG--------LEDLKD 74 (393)
T ss_pred HHHhHhhhcccccccchHHHHHHHHhh-hhhhhhhHHHHHHHHHhcCccHHHHHHHHHHHHHHhcc--------HHHhcc
Confidence 355666666666666667666666543 2223335555555555566776666554443322 22 111111
Q ss_pred hhccccccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhhhccccccCcccchhhhhcchh
Q 006636 522 KERTNEMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDADSSLECSWFATTSM 597 (637)
Q Consensus 522 ~~~~~~~~~~~~~a~~~~e~~~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~~~~k~~g~swi~~~~~ 597 (637)
... .+..+.-+.++++.--.+. | ++.+-+..|--...+.++++..++.-+.+-|.+||+.+|.
T Consensus 75 ~l~-------a~ip~ewl~~~~er~ltde-e-----kaq~eAlggi~kl~Etl~e~leeq~~rh~gg~k~igtggt 137 (393)
T COG3825 75 RLW-------AKIPEEWLRKIFERVLTDE-E-----KAQVEALGGIDKLMETLKERLEEQKERHEGGSKWIGTGGT 137 (393)
T ss_pred chh-------ccChHHHHHHHHHHhcCHH-H-----HHHHHHhcCcchhHHHHHHhHHHhhcCCCCCcceeccCCC
Confidence 110 0111111222222111110 1 2333344455556677788888888888899999998864
No 391
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=46.20 E-value=3e+02 Score=27.06 Aligned_cols=61 Identities=3% Similarity=-0.076 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 006636 160 EAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAW 223 (637)
Q Consensus 160 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 223 (637)
.-+.++++..+.++ .+...+..++..+.+..+.++..+.++++.... +-+...|...+...
T Consensus 49 ~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~--~~~~~LW~~yL~~~ 109 (321)
T PF08424_consen 49 RKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN--PGSPELWREYLDFR 109 (321)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHH
Confidence 34455555555533 255556666666666666666666666666543 33455565555543
No 392
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=45.57 E-value=3.6e+02 Score=27.78 Aligned_cols=125 Identities=11% Similarity=0.107 Sum_probs=83.9
Q ss_pred HHHHHHcCChhHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006636 79 MNSLIERGKPQEAQ-AIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGN 157 (637)
Q Consensus 79 ~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 157 (637)
|.--...|+...|- ++|+.+....-.|+.....+ ......|+++.+...+....+. +.....+...+++...+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 44445678876664 45555554333344443333 3455678999998888766543 24455677788888889999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 006636 158 MEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREG 207 (637)
Q Consensus 158 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 207 (637)
++.|...-+-|....++ +..........--+.|-++++...+.++....
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 99999999988877666 55555444444456678888888888887654
No 393
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=43.72 E-value=1.1e+02 Score=27.23 Aligned_cols=30 Identities=17% Similarity=0.145 Sum_probs=13.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006636 211 PNLRTYNVLVRAWCNEKNITEAWNVMHKMA 240 (637)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 240 (637)
|+..+|..++..+...|+.++|.++..++.
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444444444444433
No 394
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=43.13 E-value=1e+02 Score=20.76 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=9.3
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 006636 432 GWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~~ 451 (637)
++.+.|++++|.+..+.+++
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 34445555555555554444
No 395
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=42.59 E-value=5e+02 Score=28.57 Aligned_cols=27 Identities=7% Similarity=0.213 Sum_probs=19.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006636 216 YNVLVRAWCNEKNITEAWNVMHKMAAS 242 (637)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~~~~~ 242 (637)
|..+..+|.-..+.+.+.++++++.+.
T Consensus 213 y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 213 YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 455667777777888888888887763
No 396
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=42.47 E-value=61 Score=33.06 Aligned_cols=107 Identities=14% Similarity=-0.060 Sum_probs=71.3
Q ss_pred HHHHHHcCCHhhHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006636 325 IKGFVEIMDRDGVDEVLALMKEFRVNPDV-ITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQE 403 (637)
Q Consensus 325 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 403 (637)
+..+...+.++.|..++..+++.. |+- ..|..-..++.+.+++..|+.-...+++.. +.-...|..=..++.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHH
Confidence 444556678888999998888864 443 334444477888888888888888877753 2223334444455566677
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006636 404 PEKAEELLMTMIESGFHPNVVIFTTIISGWCSD 436 (637)
Q Consensus 404 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 436 (637)
+.+|...|+..... .|+..-...++.-|-..
T Consensus 88 ~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 88 FKKALLDLEKVKKL--APNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHHHHHHhhhc--CcCcHHHHHHHHHHHHH
Confidence 77788888777664 67777777777665443
No 397
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=42.45 E-value=3.4e+02 Score=26.53 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHH
Q 006636 214 RTYNVLVRAWCNEKNITEAWNVMHKMAA----SGMKPDVVTY 251 (637)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~~~~----~g~~~~~~~~ 251 (637)
..+.....-|++.|+-+.|++.+++..+ .|.+.|++.+
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~ 146 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFY 146 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHH
Confidence 3455555566666666666665554432 3444444433
No 398
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=42.36 E-value=1.5e+02 Score=22.67 Aligned_cols=22 Identities=14% Similarity=-0.236 Sum_probs=12.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHH
Q 006636 464 LMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
+.......|.+++|...+++..
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3444455566666666665553
No 399
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=42.35 E-value=6e+02 Score=29.41 Aligned_cols=48 Identities=17% Similarity=0.073 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006636 104 KPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSES 155 (637)
Q Consensus 104 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 155 (637)
.+++.+-...+..+...+..+ +...+..+++ .+|..+-...+.++.+.
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l 679 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLREL 679 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHH
Confidence 456666666666666655433 3344444443 34544444444444443
No 400
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=41.79 E-value=78 Score=22.10 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=7.7
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 006636 254 IATAYAQNGEADQAEEVIVE 273 (637)
Q Consensus 254 li~~~~~~g~~~~A~~~~~~ 273 (637)
+|.++...|++++|.+.+++
T Consensus 29 vI~gllqlg~~~~a~eYi~~ 48 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKE 48 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33344444444444444333
No 401
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=41.59 E-value=27 Score=28.70 Aligned_cols=21 Identities=48% Similarity=0.694 Sum_probs=10.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCC
Q 006636 437 GSMDRAIEVFDKMCEHGVSPN 457 (637)
Q Consensus 437 g~~~~A~~~~~~m~~~~~~p~ 457 (637)
|.-.+|-.+|++|++.|-+||
T Consensus 109 gsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc
Confidence 344445555555555555544
No 402
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=41.27 E-value=2e+02 Score=26.51 Aligned_cols=30 Identities=7% Similarity=-0.091 Sum_probs=19.1
Q ss_pred HHHHHHHHHH---------HcCCHHHHHHHHHHHhhhhc
Q 006636 495 TFLLLAEARR---------ATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 495 ~~~~l~~~~~---------~~g~~~eA~~~~~~~~~~~~ 524 (637)
.|..++..+. ..+.+..|..+++++....+
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~ 209 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLND 209 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCC
Confidence 4555555552 34567788888888766644
No 403
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=40.68 E-value=2.7e+02 Score=24.88 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=14.2
Q ss_pred HHHcCCHHHHHHHHHHHh
Q 006636 503 RRATGLTKEAKRILSKIK 520 (637)
Q Consensus 503 ~~~~g~~~eA~~~~~~~~ 520 (637)
..+.|++++|+++++-|.
T Consensus 131 ~l~~~~~~~Ae~~~~~ME 148 (204)
T COG2178 131 LLRKGSFEEAERFLKFME 148 (204)
T ss_pred HHHhccHHHHHHHHHHHH
Confidence 346788999999888884
No 404
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.58 E-value=4e+02 Score=26.91 Aligned_cols=61 Identities=13% Similarity=0.186 Sum_probs=34.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006636 75 MTKLMNSLIERGKPQEAQAIFNNLIEG--GHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEE 135 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 135 (637)
+..+...|..+|+++.|++.|.+..+- ..+.....|-.+|..-.-.|+|........+..+
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 455666777778888887777775431 0111233444455555555666655555555443
No 405
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=40.43 E-value=3.6e+02 Score=26.50 Aligned_cols=80 Identities=24% Similarity=0.297 Sum_probs=55.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHH-
Q 006636 391 YSILAKGYVREQEPEKAEELLMTMIES---GFHPNVVIF--TTIISGWCSDGSMDRAIEVFDKMCE-----HGVSPNLK- 459 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~- 459 (637)
...++...-+.++.++|+++++++.+. .-.|+.+.| ..+..++...|+.+++.+++++..+ .+++|+..
T Consensus 78 vei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 78 VEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHS 157 (380)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhh
Confidence 334445556777899999999988752 225666655 4556677789999999999988776 57777665
Q ss_pred HHHHHHHHHHh
Q 006636 460 TFETLMWGYSE 470 (637)
Q Consensus 460 ~~~~l~~~~~~ 470 (637)
.|..+.+-|.+
T Consensus 158 ~fY~lssqYyk 168 (380)
T KOG2908|consen 158 SFYSLSSQYYK 168 (380)
T ss_pred hHHHHHHHHHH
Confidence 46666555543
No 406
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=39.77 E-value=1.7e+02 Score=22.32 Aligned_cols=54 Identities=19% Similarity=0.242 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 006636 139 DPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTP-TTSTYNTLIKGYGIAGK 192 (637)
Q Consensus 139 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~ 192 (637)
|.|....-.+...+...|++++|++.+-.+.+..... +...-..|+..+...|.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4455555555666666666666666666655543221 23334444444443333
No 407
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=39.58 E-value=3.5e+02 Score=25.89 Aligned_cols=67 Identities=16% Similarity=0.246 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006636 388 AHAYSILAKGYVREQEPEKAEELLMTMIE----SGFHPNVVIF-TTIISGWCSDGSMDRAIEVFDKMCEHGV 454 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~ 454 (637)
..++..+...|++.++.+.+.++.++..+ .|.+.|+..- -.|.-.|....-+++-++..+.|.+.|-
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGg 186 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGG 186 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 44555555666666665555555444332 2333333211 1122223333334555555555555543
No 408
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=39.48 E-value=1.1e+02 Score=20.03 Aligned_cols=32 Identities=16% Similarity=0.305 Sum_probs=18.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006636 434 CSDGSMDRAIEVFDKMCEHGVSPNLKTFETLM 465 (637)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 465 (637)
.+.|-..++..++++|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34555556666666666666555555555444
No 409
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=39.03 E-value=6.7e+02 Score=29.03 Aligned_cols=261 Identities=9% Similarity=0.020 Sum_probs=156.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 006636 211 PNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIII 290 (637)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 290 (637)
+|..+-...+..+.+.+..+ +...+..+++ .+|...-...+.++.+.+........+..++.. +|..+-...+
T Consensus 633 ~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~ 705 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAAL 705 (897)
T ss_pred CCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHH
Confidence 67777777788887777644 5555555554 345555555555555543322222334344443 5666666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChh
Q 006636 291 SGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMD 370 (637)
Q Consensus 291 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 370 (637)
..+...+..+ ...+.. ..+ .+|...-...+.++.+.+..+. +.... ..++...-...+.++...+..+
T Consensus 706 ~aL~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 706 DVLRALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred HHHHhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHhcccc
Confidence 7666543211 122233 332 5677666777777776654332 22222 2456777777777887777654
Q ss_pred H-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006636 371 K-CKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKM 449 (637)
Q Consensus 371 ~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 449 (637)
. +...+..+.+ .+|..+-.+.+.++.+.|..+.+...+..+.+ .+|..+-...+.++...+. +++...+..+
T Consensus 774 ~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~ 846 (897)
T PRK13800 774 APAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEA 846 (897)
T ss_pred chhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHH
Confidence 3 3455555554 46788888899999999987666555555554 4566666777888888776 5666777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006636 450 CEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEAR 503 (637)
Q Consensus 450 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 503 (637)
.+ .|+...-...+.++...+....+...+..+.+ .+|...-.....++
T Consensus 847 L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~---D~d~~Vr~~A~~aL 894 (897)
T PRK13800 847 LT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT---DSDADVRAYARRAL 894 (897)
T ss_pred hc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh---CCCHHHHHHHHHHH
Confidence 65 36777777777788775444567777776654 34544444444443
No 410
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=38.86 E-value=4.3e+02 Score=26.75 Aligned_cols=54 Identities=9% Similarity=0.157 Sum_probs=31.0
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhc--CCHHHHHHHHHHHHH
Q 006636 116 ALTIQKRFNSIHSIMSQVEENGMDPDSI--FFNAVINAFSES--GNMEEAMDTFWKMKE 170 (637)
Q Consensus 116 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~--g~~~~A~~~~~~m~~ 170 (637)
.+...+++..|.+++..+... ++++.. .+..+..+|... -++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344566777777777777665 444433 344444555443 356667777766554
No 411
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=38.49 E-value=74 Score=30.50 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006636 426 FTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTF 461 (637)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 461 (637)
|+..|....+.||+++|+.+++++.+.|+.--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 345555555566666666666666555554333333
No 412
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=38.42 E-value=2.4e+02 Score=23.61 Aligned_cols=48 Identities=6% Similarity=0.099 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006636 439 MDRAIEVFDKMCEHG-VSPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 439 ~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
..+.+.++++..+.. ..-+....-.|.-++.+.|++++++++.+.+.+
T Consensus 51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 444555555555411 111122233334455555666666555555544
No 413
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=38.07 E-value=3.6e+02 Score=25.58 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHH
Q 006636 387 DAHAYSILAKGYVREQEPEKAEELL 411 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~ 411 (637)
++.....+...|.+.|++.+|+..|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5667777777788888877777655
No 414
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=37.86 E-value=2.5e+02 Score=23.76 Aligned_cols=81 Identities=21% Similarity=0.237 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHH
Q 006636 109 TYTTLLAALTIQKRFNSIHSIMSQVEENGM-----DPDSIFFNAVINAFSESGN-MEEAMDTFWKMKESGLTPTTSTYNT 182 (637)
Q Consensus 109 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~ll~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~ 182 (637)
..+.++.-....+++.....+++.+..... ..+...|..++.+.++... --.+..+|.-+.+.+.++++.-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 346666666666677766666666532210 2344456666666655554 3455666666666666666777777
Q ss_pred HHHHHHh
Q 006636 183 LIKGYGI 189 (637)
Q Consensus 183 li~~~~~ 189 (637)
||.++.+
T Consensus 121 li~~~l~ 127 (145)
T PF13762_consen 121 LIKAALR 127 (145)
T ss_pred HHHHHHc
Confidence 7766544
No 415
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=37.79 E-value=1.3e+02 Score=20.30 Aligned_cols=20 Identities=10% Similarity=0.008 Sum_probs=9.1
Q ss_pred HHHhcCChhHHHHHHHHHHH
Q 006636 467 GYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 467 ~~~~~g~~~~A~~~~~~m~~ 486 (637)
++.+.|++++|.++.+.+.+
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 34444555555554444444
No 416
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=37.04 E-value=4.2e+02 Score=26.07 Aligned_cols=69 Identities=17% Similarity=0.209 Sum_probs=50.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHC---CCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 006636 357 STIMNAWSTAGFMDKCKEIFDDMGKA---GIKPDAHAY--SILAKGYVREQEPEKAEELLMTMIE-----SGFHPNVVI 425 (637)
Q Consensus 357 ~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 425 (637)
-.++....+.++.++|.++++++.+. .-.|+.+.| +..+..+...|+..++.+++.+..+ .+++|++.+
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHS 157 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhh
Confidence 34455567788999999999998752 224566655 4456677789999999999998877 566775543
No 417
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=36.97 E-value=4e+02 Score=26.28 Aligned_cols=63 Identities=14% Similarity=0.180 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006636 405 EKAEELLMTMIESGFHPNV----VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYS 469 (637)
Q Consensus 405 ~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 469 (637)
++...++..+++. -|+. ..|-.+.......|.++.++.+|++++..|..|-...-..++..+-
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4555556655543 3332 3566666666667777777777777777666665555555544443
No 418
>PHA02875 ankyrin repeat protein; Provisional
Probab=36.61 E-value=4.8e+02 Score=26.62 Aligned_cols=12 Identities=8% Similarity=0.014 Sum_probs=5.4
Q ss_pred HHHHHcCCHHHH
Q 006636 256 TAYAQNGEADQA 267 (637)
Q Consensus 256 ~~~~~~g~~~~A 267 (637)
...+..|+.+-.
T Consensus 140 h~A~~~~~~~~v 151 (413)
T PHA02875 140 HLAVMMGDIKGI 151 (413)
T ss_pred HHHHHcCCHHHH
Confidence 334445555443
No 419
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.40 E-value=46 Score=32.32 Aligned_cols=116 Identities=16% Similarity=0.103 Sum_probs=76.3
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 006636 365 TAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNV-VIFTTIISGWCSDGSMDRAI 443 (637)
Q Consensus 365 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~ 443 (637)
..|.++.|++.|...+... ++....|..-...+.+.+.+..|++-+....+. +||. .-|-.-..+....|++.+|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHH
Confidence 5677888888888887764 455666666677788888888888888877765 3443 33444444555678999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006636 444 EVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 444 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
..|....+.++.+.... .+-...-+.+..++-...+++..
T Consensus 203 ~dl~~a~kld~dE~~~a--~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 203 HDLALACKLDYDEANSA--TLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHHHhccccHHHHH--HHHHhccchhhhhhchhHHHHHH
Confidence 99998888766544333 33334445555555555554443
No 420
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=36.01 E-value=5.9e+02 Score=27.51 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006636 142 SIFFNAVINAFSESGNMEEAMDTFWKM 168 (637)
Q Consensus 142 ~~~~~~ll~~~~~~g~~~~A~~~~~~m 168 (637)
+..|+ .+..+.-.|.++.|..++...
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 55665 566677777777777777443
No 421
>PHA02875 ankyrin repeat protein; Provisional
Probab=35.95 E-value=4.9e+02 Score=26.54 Aligned_cols=76 Identities=11% Similarity=0.107 Sum_probs=35.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChh--hHHHHHHHHHhcCC
Q 006636 223 WCNEKNITEAWNVMHKMAASGMKPDVVT--YNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGR--TCGIIISGYCKEGK 298 (637)
Q Consensus 223 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~ 298 (637)
.+..|+.+-+ +.+.+.|..|+... ..+.+...+..|+.+-+ +.+.+.|..|+.. .....+...+..|+
T Consensus 9 A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 3445665443 33445566555432 23344555566666533 3334445444322 11223444556666
Q ss_pred HHHHHHHH
Q 006636 299 IKEALRFA 306 (637)
Q Consensus 299 ~~~A~~~~ 306 (637)
.+....++
T Consensus 81 ~~~v~~Ll 88 (413)
T PHA02875 81 VKAVEELL 88 (413)
T ss_pred HHHHHHHH
Confidence 65544433
No 422
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=35.80 E-value=4e+02 Score=25.51 Aligned_cols=149 Identities=13% Similarity=0.086 Sum_probs=67.0
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC
Q 006636 85 RGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTI----QKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE----SG 156 (637)
Q Consensus 85 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g 156 (637)
.+++..|...+......+ +......+...+.. ..+...|...|..+.+.| +......|..+|.. ..
T Consensus 54 ~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 54 PPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCccc
Confidence 345556666666555422 22233333333322 224566666666555544 22333334444443 23
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-------ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----
Q 006636 157 NMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAG-------KPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCN---- 225 (637)
Q Consensus 157 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~---- 225 (637)
+..+|...|.+..+.|..+...+...+...|..-. +...|...|.+....+ +......+...|..
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~----~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG----NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc----CHHHHHHHHHHHHcCCCC
Confidence 66667777777666654322222333333332221 1224555555554443 33333333333322
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 006636 226 EKNITEAWNVMHKMAASG 243 (637)
Q Consensus 226 ~g~~~~A~~~~~~~~~~g 243 (637)
..+..+|...|...-+.|
T Consensus 204 ~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CcCHHHHHHHHHHHHHCC
Confidence 234555555555555544
No 423
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=35.46 E-value=2.3e+02 Score=22.54 Aligned_cols=16 Identities=13% Similarity=0.030 Sum_probs=6.4
Q ss_pred hcCChHHHHHHHHHHH
Q 006636 189 IAGKPEESVKLLDLMS 204 (637)
Q Consensus 189 ~~g~~~~A~~~~~~m~ 204 (637)
+.|--+++...+.++.
T Consensus 81 klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 81 KLGLASALESRLTRLA 96 (116)
T ss_dssp HCT-HHHHHHHHHHHC
T ss_pred hhccHHHHHHHHHHHH
Confidence 3444444444444443
No 424
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=35.00 E-value=2.8e+02 Score=24.52 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=11.7
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 006636 432 GWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~~ 451 (637)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 45566666666666665554
No 425
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=34.38 E-value=2.1e+02 Score=24.18 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=13.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 006636 254 IATAYAQNGEADQAEEVIVEMEHNGVQP 281 (637)
Q Consensus 254 li~~~~~~g~~~~A~~~~~~~~~~~~~~ 281 (637)
++..+...++.-.|.++|+++.+.++..
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~i 53 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGI 53 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCC
Confidence 4444444444455555555555544333
No 426
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=34.28 E-value=35 Score=25.24 Aligned_cols=19 Identities=11% Similarity=-0.024 Sum_probs=14.8
Q ss_pred ccccCCCchhhhhhhhccc
Q 006636 562 VSSDQKGSAAALKKGRMLL 580 (637)
Q Consensus 562 y~~~g~~~~a~~~r~~~~~ 580 (637)
+.....|++|.+.+..|..
T Consensus 49 ~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 49 AGVGSQWERARRLQQKMKT 67 (79)
T ss_pred ccccHHHHHHHHHHHHHHH
Confidence 4556789999999988853
No 427
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=34.01 E-value=3.1e+02 Score=24.28 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=17.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 006636 394 LAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
.+-.|.+.|.+++|.+++++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 34567888888888888888775
No 428
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=33.91 E-value=84 Score=30.12 Aligned_cols=30 Identities=10% Similarity=0.293 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006636 216 YNVLVRAWCNEKNITEAWNVMHKMAASGMK 245 (637)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 245 (637)
|+..|....+.|++++|++++++..+.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 456666677777777777777777666654
No 429
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=33.80 E-value=2.1e+02 Score=21.75 Aligned_cols=31 Identities=23% Similarity=0.171 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 006636 176 TTSTYNTLIKGYGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (637)
|......+...+...|++++|++.+-.+.+.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3444444555555555555555555555443
No 430
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=33.50 E-value=5.2e+02 Score=26.15 Aligned_cols=52 Identities=12% Similarity=0.207 Sum_probs=29.0
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 006636 399 VREQEPEKAEELLMTMIESGFHPNVV--IFTTIISGWC--SDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 399 ~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~--~~g~~~~A~~~~~~m~~ 451 (637)
...+++..|.++|..+... ++++.. .+..+..+|. ...++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3566666777777666654 344333 3333444433 34566677777766654
No 431
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=33.23 E-value=4e+02 Score=24.72 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 006636 456 PNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK 493 (637)
Q Consensus 456 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 493 (637)
|.+.....++..|. .+++++|.+.+.++.+.|+.|..
T Consensus 237 PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 237 PHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred CChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH
Confidence 55555556665553 35666777777777676666543
No 432
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=32.87 E-value=2.8e+02 Score=22.77 Aligned_cols=43 Identities=9% Similarity=0.095 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006636 195 ESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMH 237 (637)
Q Consensus 195 ~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 237 (637)
.+.++|..|...+-...-...|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555555554444222334444444445555555555555544
No 433
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=32.21 E-value=96 Score=17.27 Aligned_cols=13 Identities=23% Similarity=0.360 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 006636 404 PEKAEELLMTMIE 416 (637)
Q Consensus 404 ~~~A~~~~~~~~~ 416 (637)
.+.|..+|+++..
T Consensus 3 ~~~~r~i~e~~l~ 15 (33)
T smart00386 3 IERARKIYERALE 15 (33)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 434
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.85 E-value=2.5e+02 Score=26.36 Aligned_cols=58 Identities=9% Similarity=0.098 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006636 217 NVLVRAWCNEKNITEAWNVMHKMAA----SG-MKPDVVTYNTIATAYAQNGEADQAEEVIVEM 274 (637)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~~~~----~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 274 (637)
..+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+--++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455566666777777776666532 12 2233445555666777777777766655444
No 435
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=31.78 E-value=5e+02 Score=25.36 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=10.9
Q ss_pred HhcCChHHHHHHHHHHHhc
Q 006636 188 GIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 188 ~~~g~~~~A~~~~~~m~~~ 206 (637)
.+.|+..+|.+.|+++.+.
T Consensus 286 RklGrlrEA~K~~RDL~ke 304 (556)
T KOG3807|consen 286 RKLGRLREAVKIMRDLMKE 304 (556)
T ss_pred HHhhhHHHHHHHHHHHhhh
Confidence 3456666666666665543
No 436
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=31.58 E-value=2.7e+02 Score=25.76 Aligned_cols=14 Identities=21% Similarity=-0.109 Sum_probs=6.7
Q ss_pred ChhHHHHHHHHHHH
Q 006636 473 QPWRAEEILQIMKA 486 (637)
Q Consensus 473 ~~~~A~~~~~~m~~ 486 (637)
....|..++++..+
T Consensus 193 ~l~~Al~~L~rA~~ 206 (230)
T PHA02537 193 TLQLALALLQRAFQ 206 (230)
T ss_pred cHHHHHHHHHHHHH
Confidence 34445555555443
No 437
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=31.56 E-value=6e+02 Score=29.49 Aligned_cols=115 Identities=17% Similarity=0.180 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006636 387 DAHAYSILAKGYVREQ--EPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETL 464 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 464 (637)
...-...++.+|++.+ ++++|+.+..++.+. +.......+.-.+- +-.+-++|+.++.. -|.. .++
T Consensus 811 ~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~----~~~~ae~alkyl~f---LvDvn~Ly~~ALG~---YDl~--Lal 878 (928)
T PF04762_consen 811 KDKYLQPILTAYVKKSPPDLEEALQLIKELREE----DPESAEEALKYLCF---LVDVNKLYDVALGT---YDLE--LAL 878 (928)
T ss_pred chhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc----ChHHHHHHHhHhee---eccHHHHHHHHhhh---cCHH--HHH
Confidence 3444567788888888 888999999888865 22222222221111 12223344433321 1221 122
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006636 465 MWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
+-|=..+.+++|=+-+++++.+ ++|...-| .+ =.+.++++.|++-+.++
T Consensus 879 ~VAq~SQkDPKEYLPfL~~L~~--l~~~~rry--~I--D~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 879 MVAQQSQKDPKEYLPFLQELQK--LPPLYRRY--KI--DDHLKRYEKALRHLSAC 927 (928)
T ss_pred HHHHHhccChHHHHHHHHHHHh--CChhheee--eH--hhhhCCHHHHHHHHHhh
Confidence 3333345677777777777655 33332212 12 23567788887766553
No 438
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=31.54 E-value=4.7e+02 Score=25.02 Aligned_cols=45 Identities=22% Similarity=0.224 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 006636 266 QAEEVIVEMEHNGVQPNGRTCGIIISGYCK----EGKIKEALRFARTMKEYG 313 (637)
Q Consensus 266 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~ 313 (637)
.|...|.+....+ +......+...|.. ..++++|...|...-+.|
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555555555543 33333444444432 235566666666666554
No 439
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=31.29 E-value=7.5e+02 Score=27.32 Aligned_cols=24 Identities=4% Similarity=0.048 Sum_probs=15.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 006636 288 IIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 288 ~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
.+..+|.-..+.+.+.+++.++.+
T Consensus 215 ~vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 215 SVCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred eeeeeeEEcCCHHHHHHHHHHHHh
Confidence 345566666666667777766665
No 440
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=31.21 E-value=4.8e+02 Score=24.98 Aligned_cols=18 Identities=11% Similarity=-0.007 Sum_probs=10.5
Q ss_pred HHHHHHHcCCHhhHHHHH
Q 006636 324 LIKGFVEIMDRDGVDEVL 341 (637)
Q Consensus 324 ll~~~~~~~~~~~a~~~~ 341 (637)
++..+.+.|.+.+|..+.
T Consensus 131 li~l~y~~~~YsdalalI 148 (421)
T COG5159 131 LIYLLYKTGKYSDALALI 148 (421)
T ss_pred HHHHHHhcccHHHHHHHH
Confidence 455566666666665544
No 441
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=30.98 E-value=5e+02 Score=25.18 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=30.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006636 409 ELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYS 469 (637)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 469 (637)
++++.+.+.++.|.-.++.-+.-.+.+.=.+.+.+.+|+.+.. |+.-|..|+..|+
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHH
Confidence 4555555555666665555555555555556666666666554 3333444444443
No 442
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=29.79 E-value=2.9e+02 Score=21.98 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=14.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006636 251 YNTIATAYAQNGEADQAEEVIVEMEH 276 (637)
Q Consensus 251 ~~~li~~~~~~g~~~~A~~~~~~~~~ 276 (637)
|..|+..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44555556666666666666555544
No 443
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.64 E-value=8.9e+02 Score=27.66 Aligned_cols=26 Identities=15% Similarity=0.419 Sum_probs=20.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHH
Q 006636 75 MTKLMNSLIERGKPQEAQAIFNNLIE 100 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 100 (637)
|..|+-.|...|+.++|++++.+...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 66677888888888888888888765
No 444
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=29.15 E-value=2.7e+02 Score=26.08 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=29.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC----C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006636 253 TIATAYAQNGEADQAEEVIVEMEHN----G-VQPNGRTCGIIISGYCKEGKIKEALRFART 308 (637)
Q Consensus 253 ~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 308 (637)
.+..-|...|++++|.++|+.+... | ..+...+...+..++.+.|+.+..+.+.-+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4666677777777777777666321 1 111223344455555556665555544433
No 445
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=28.75 E-value=3.3e+02 Score=22.34 Aligned_cols=43 Identities=14% Similarity=0.288 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006636 231 EAWNVMHKMAASGMKPD-VVTYNTIATAYAQNGEADQAEEVIVE 273 (637)
Q Consensus 231 ~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~ 273 (637)
.+..+|..|...|+-.. ...|......+...|++++|.++|..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666666554332 44555666666666666666666654
No 446
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=28.68 E-value=3.6e+02 Score=22.78 Aligned_cols=64 Identities=17% Similarity=0.155 Sum_probs=40.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006636 445 VFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLT 509 (637)
Q Consensus 445 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 509 (637)
+.+.+.+.|++++..= ..++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 3344456666655432 245566666666678888888887766666666666666777777643
No 447
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=28.27 E-value=3.1e+02 Score=21.84 Aligned_cols=15 Identities=7% Similarity=0.200 Sum_probs=5.8
Q ss_pred HcCChhHHHHHHHHH
Q 006636 365 TAGFMDKCKEIFDDM 379 (637)
Q Consensus 365 ~~g~~~~a~~~~~~~ 379 (637)
+.|--+++...+.++
T Consensus 81 klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 81 KLGLASALESRLTRL 95 (116)
T ss_dssp HCT-HHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHH
Confidence 344444444444433
No 448
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=27.28 E-value=5.7e+02 Score=24.66 Aligned_cols=26 Identities=19% Similarity=0.137 Sum_probs=16.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006636 490 HPQKSTFLLLAEARRATGLTKEAKRI 515 (637)
Q Consensus 490 ~p~~~~~~~l~~~~~~~g~~~eA~~~ 515 (637)
.-|+..|..+..+|.-.|+.+.+.+-
T Consensus 194 ~Fd~~~Y~~v~~AY~lLgk~~~~~dk 219 (291)
T PF10475_consen 194 DFDPDKYSKVQEAYQLLGKTQSAMDK 219 (291)
T ss_pred hCCHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34666777777777777766555433
No 449
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=27.26 E-value=1.4e+02 Score=17.66 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHH
Q 006636 439 MDRAIEVFDKMCEHGVSPNLKTFE 462 (637)
Q Consensus 439 ~~~A~~~~~~m~~~~~~p~~~~~~ 462 (637)
++.|..+|++.+. +.|++.+|.
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHH
Confidence 3444444444444 234444443
No 450
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=27.12 E-value=6.1e+02 Score=24.89 Aligned_cols=95 Identities=15% Similarity=0.119 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCCChhhHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCH----H
Q 006636 249 VTYNTIATAYAQNGEADQAEEVIVEMEH----NGVQPNGRTCGIIIS-GYCKEGKIKEALRFARTMKEYGVHPNL----V 319 (637)
Q Consensus 249 ~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~~~~----~ 319 (637)
..+......|++-|+-+.|++.+.+..+ .|.+.|+..+..-+. .|....-+.+-++..+.+.+.|...+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 3455667788899999988888776543 455556555444333 333333355566666666666543332 2
Q ss_pred HHHHHHHHHHHcCCHhhHHHHHHHHh
Q 006636 320 IFNLLIKGFVEIMDRDGVDEVLALMK 345 (637)
Q Consensus 320 ~~~~ll~~~~~~~~~~~a~~~~~~~~ 345 (637)
+|..+- +....++.+|-.+|-...
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHc
Confidence 344332 233456666666665543
No 451
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=27.05 E-value=5.7e+02 Score=24.55 Aligned_cols=67 Identities=16% Similarity=0.327 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 006636 213 LRTYNVLVRAWCNEKNITEAWNVMHKMAA----SGMKPDVVTYN-TIATAYAQNGEADQAEEVIVEMEHNGV 279 (637)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~~ 279 (637)
..+|..+...|++.++.+.+.++.++..+ .|.+.|....- -|.-.|....-.++-++..+.|.+.|.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGg 186 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGG 186 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 45666777777777777777666655443 34444432211 122223333334555555566666554
No 452
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=26.37 E-value=3.3e+02 Score=26.66 Aligned_cols=94 Identities=14% Similarity=0.065 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHH
Q 006636 389 HAYSILAKGYVREQEPEKAEELLMTMIESGF---HPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK-TFETL 464 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l 464 (637)
..|--=.+-|.+..++..|...|.+-++... ..+.+.|+.-..+-...|++..|+.--...+. +.|+.. .|..=
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhhhhh
Confidence 3455556778888888889888888765421 22456677777777778888888887777776 345543 44444
Q ss_pred HHHHHhcCChhHHHHHHHHH
Q 006636 465 MWGYSEARQPWRAEEILQIM 484 (637)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~m 484 (637)
..++....++++|....++.
T Consensus 160 Akc~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEG 179 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhh
Confidence 44555666666666655543
No 453
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=26.13 E-value=27 Score=28.23 Aligned_cols=9 Identities=44% Similarity=1.051 Sum_probs=8.3
Q ss_pred chhhhhcchhhhh
Q 006636 588 ECSWFATTSMYLS 600 (637)
Q Consensus 588 g~swi~~~~~~~~ 600 (637)
||||+++ |.
T Consensus 2 ~~~w~~~----h~ 10 (116)
T PF14432_consen 2 GCSWIEV----HS 10 (116)
T ss_pred CCCccce----EE
Confidence 8999999 78
No 454
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=26.12 E-value=4.2e+02 Score=27.02 Aligned_cols=26 Identities=12% Similarity=0.186 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 006636 179 TYNTLIKGYGIAGKPEESVKLLDLMS 204 (637)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~ 204 (637)
++--+.-+|.-.+++.+|.+.|..+.
T Consensus 166 ~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 166 TYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555443
No 455
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=25.81 E-value=6.1e+02 Score=24.48 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=15.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHH
Q 006636 281 PNGRTCGIIISGYCKEGKIKEAL 303 (637)
Q Consensus 281 ~~~~~~~~li~~~~~~g~~~~A~ 303 (637)
.|+..|..+..+|.-.|+...+.
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHHH
Confidence 46677777777777777665554
No 456
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=25.62 E-value=4.9e+02 Score=28.20 Aligned_cols=75 Identities=16% Similarity=0.172 Sum_probs=49.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 006636 112 TLLAALTIQKRFNSIHSIMSQVEENG--MDPDSIFFNAVINAFSESGNME------EAMDTFWKMKESGLTPTTSTYNTL 183 (637)
Q Consensus 112 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~------~A~~~~~~m~~~~~~~~~~~~~~l 183 (637)
+|+.+|...|++..+.++++.+...+ -..-...+|..|+...+.|.++ .|...++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78889999999998888888877543 1222456777778888888754 3344444433 33467777777
Q ss_pred HHHHHh
Q 006636 184 IKGYGI 189 (637)
Q Consensus 184 i~~~~~ 189 (637)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665443
No 457
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=25.59 E-value=2.1e+02 Score=20.30 Aligned_cols=27 Identities=11% Similarity=0.004 Sum_probs=10.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006636 391 YSILAKGYVREQEPEKAEELLMTMIES 417 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 417 (637)
++.++..+++..-.++++..+.++.+.
T Consensus 11 ~~Ql~el~Aed~AieDtiy~L~~al~~ 37 (65)
T PF09454_consen 11 SNQLYELVAEDHAIEDTIYYLDRALQR 37 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333333333333344444444444333
No 458
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=25.40 E-value=3.1e+02 Score=20.87 Aligned_cols=64 Identities=20% Similarity=0.132 Sum_probs=30.9
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006636 443 IEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEA 512 (637)
Q Consensus 443 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA 512 (637)
.++++...+.|+- +......+-.+-...|+.+.|.+++..+. .| +..|...++++...|.-.-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 3455555555532 33333333222234466666666666554 22 22455666666666654444
No 459
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=25.32 E-value=5.6e+02 Score=23.85 Aligned_cols=166 Identities=16% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHH-HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006636 321 FNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAW-STAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYV 399 (637)
Q Consensus 321 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 399 (637)
...++..+.+.++++++...++++...+...+..-.+.+..+| ...|....+..++..+....-.........++.-|.
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk 83 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK 83 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH
Q ss_pred H--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHC---CCCCC
Q 006636 400 R--EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGS-----------------MDRAIEVFDKMCEH---GVSPN 457 (637)
Q Consensus 400 ~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~---~~~p~ 457 (637)
+ ...+..--.-+-.++...+-|...+-.+.+--+-..|+ .+.|.+.|+++.+. .++|.
T Consensus 84 ~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~ 163 (236)
T PF00244_consen 84 KKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPT 163 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCC
Q ss_pred HHHHHHH-----HHHHHhcCChhHHHHHHHHHHH
Q 006636 458 LKTFETL-----MWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 458 ~~~~~~l-----~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
..++..| +.-|-..|+.++|.++-+...+
T Consensus 164 ~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 164 HPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp SHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
No 460
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=25.15 E-value=5.5e+02 Score=23.68 Aligned_cols=64 Identities=22% Similarity=0.265 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHH--HHHHHHHHcCCHHHHHHHHHHHH
Q 006636 210 KPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKP---DVVTYN--TIATAYAQNGEADQAEEVIVEME 275 (637)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~---~~~~~~--~li~~~~~~g~~~~A~~~~~~~~ 275 (637)
.++...+|.|+--|.-...+.+|-..|..- .|+.| |..++. .-|......|+.+.|.+....+-
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 445555555555555555555555554332 22332 222222 34455566677777766666553
No 461
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=25.14 E-value=7.1e+02 Score=25.00 Aligned_cols=99 Identities=11% Similarity=0.065 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHH-------CCC------------------CCCHHHHHHH---HHHHHhcCC
Q 006636 106 SLVTYTTLLAALTIQKRFNSIHSIMSQVEE-------NGM------------------DPDSIFFNAV---INAFSESGN 157 (637)
Q Consensus 106 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~~------------------~~~~~~~~~l---l~~~~~~g~ 157 (637)
.+.++..+-..+..+|+...|.+++++++- ..+ .-|...|.++ +..+.+.|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 556666677777778887777776666531 011 1233334333 345556677
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHH
Q 006636 158 MEEAMDTFWKMKESGLTPTTSTYNTLIKGYG-IAGKPEESVKLLDLMS 204 (637)
Q Consensus 158 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~ 204 (637)
+..|.++.+-+...++.-|+.....+|+.|+ +.++++--+++.+...
T Consensus 119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 7777777777777665556666666666554 4555655666655543
No 462
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=24.90 E-value=2.1e+02 Score=20.29 Aligned_cols=22 Identities=9% Similarity=0.135 Sum_probs=7.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHH
Q 006636 78 LMNSLIERGKPQEAQAIFNNLI 99 (637)
Q Consensus 78 l~~~~~~~g~~~~A~~~~~~~~ 99 (637)
++...++..-.++++..+++..
T Consensus 14 l~el~Aed~AieDtiy~L~~al 35 (65)
T PF09454_consen 14 LYELVAEDHAIEDTIYYLDRAL 35 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 463
>PRK13342 recombination factor protein RarA; Reviewed
Probab=24.49 E-value=7.8e+02 Score=25.24 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006636 437 GSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEAR 472 (637)
Q Consensus 437 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 472 (637)
++.+.|+..+..|.+.|..|....-..+..++...|
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 566677777777776665555444444444444444
No 464
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=24.45 E-value=61 Score=22.79 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=10.0
Q ss_pred ChHHHHHHHHHHHhcCCCCCC
Q 006636 192 KPEESVKLLDLMSREGNVKPN 212 (637)
Q Consensus 192 ~~~~A~~~~~~m~~~~~~~~~ 212 (637)
+++.|...|.++...+.+||+
T Consensus 40 d~~~Al~~F~~lk~~~~IP~e 60 (63)
T smart00804 40 DYERALKNFTELKSEGSIPPE 60 (63)
T ss_pred CHHHHHHHHHHHHhcCCCChh
Confidence 444555555555444444443
No 465
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.44 E-value=1.1e+03 Score=26.81 Aligned_cols=134 Identities=10% Similarity=0.070 Sum_probs=65.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006636 252 NTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEI 331 (637)
Q Consensus 252 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 331 (637)
.+....+...|+.++...+-.-+. .|..++..+.+.+.+++|++++..-. +........-.+. .
T Consensus 508 etv~~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~~~------~~el~yk~ap~Li-~ 571 (911)
T KOG2034|consen 508 ETVYQLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLNQR------NPELFYKYAPELI-T 571 (911)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhcc------chhhHHHhhhHHH-h
Confidence 344445556677776665544442 25567777888888888887765432 2211111111111 1
Q ss_pred CCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006636 332 MDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAG---FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEP 404 (637)
Q Consensus 332 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 404 (637)
..+.+....+..... ..+......++..+.+.+ ....+...++-....-...++..+|.++..|++..+-
T Consensus 572 ~~p~~tV~~wm~~~d---~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~ 644 (911)
T KOG2034|consen 572 HSPKETVSAWMAQKD---LDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERD 644 (911)
T ss_pred cCcHHHHHHHHHccc---cCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCcc
Confidence 222223333322222 122333344445544442 2333444444333332345788888888888776543
No 466
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=24.41 E-value=4.8e+02 Score=22.75 Aligned_cols=59 Identities=10% Similarity=0.106 Sum_probs=37.5
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006636 450 CEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLT 509 (637)
Q Consensus 450 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 509 (637)
.+.|++++..-. .++..+...+..-.|.++++.+.+.+..++..|.-..++.+.+.|.+
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 355666555433 33444444555667888888887777667777666666777777754
No 467
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.95 E-value=9.2e+02 Score=26.19 Aligned_cols=93 Identities=13% Similarity=0.123 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006636 355 TYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD------AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTT 428 (637)
Q Consensus 355 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 428 (637)
.|+..-+. .+..++..+.+.|..-.+. ++.| ......|.-.|.+..++|.|.+++.+..+.. +.++.+--.
T Consensus 357 LWn~A~~~-F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~ 433 (872)
T KOG4814|consen 357 LWNTAKKL-FKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLL 433 (872)
T ss_pred HHHhhHHH-HHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHH
Confidence 34443333 3556677777777665442 1222 3345666677788888999999999988764 445666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 006636 429 IISGWCSDGSMDRAIEVFDKMC 450 (637)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~ 450 (637)
+..+....|.-++|+.......
T Consensus 434 ~~~~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred HHHHHHHhcchHHHHHHHHHHH
Confidence 6777778888888888776654
No 468
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=23.56 E-value=7.2e+02 Score=24.53 Aligned_cols=115 Identities=14% Similarity=0.066 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh------cCChHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhcCCHH
Q 006636 158 MEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI------AGKPEESVKLLDLMSREGNVKPNL-RTYNVLVRAWCNEKNIT 230 (637)
Q Consensus 158 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~------~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~li~~~~~~g~~~ 230 (637)
++++..++++....+. |-++.....|.++.. .-++.....+|+-+.... |+. ++.|--+ +..+..-.+
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~a---pSPvV~LNRAV-Ala~~~Gp~ 346 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAA---PSPVVTLNRAV-ALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhC---CCCeEeehHHH-HHHHhhhHH
Confidence 4555666666555543 455555555544422 124555556666655533 332 3333322 233333455
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006636 231 EAWNVMHKMAASGMKPDVV-TYNTIATAYAQNGEADQAEEVIVEMEHN 277 (637)
Q Consensus 231 ~A~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~ 277 (637)
.++.+.+-+...+--.+-+ .+..=...+.+.|..++|...|++....
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 5566665555442111112 2223345566677777777777766554
No 469
>PRK09462 fur ferric uptake regulator; Provisional
Probab=23.37 E-value=4.6e+02 Score=22.15 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=37.0
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006636 449 MCEHGVSPNLKTFETLMWGYSEA-RQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLT 509 (637)
Q Consensus 449 m~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 509 (637)
+.+.|++++..-. .++..+... +..-.|.++++.+.+.+...+..|.-..++.+...|.+
T Consensus 8 l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 4455666555432 233444433 45667888888887777666777666666777777753
No 470
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=23.32 E-value=5.8e+02 Score=23.32 Aligned_cols=62 Identities=11% Similarity=0.022 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCC----CHHHHH-HHHHHHHhcCChhHHHHHHHHHHHCC
Q 006636 427 TTIISGWCSDGS-------MDRAIEVFDKMCEHGVSP----NLKTFE-TLMWGYSEARQPWRAEEILQIMKAFG 488 (637)
Q Consensus 427 ~~li~~~~~~g~-------~~~A~~~~~~m~~~~~~p----~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~g 488 (637)
-.+.+.|...|+ ...|++.|++..+..-.| +..+.. .++....+.|+.++|.+.|.++...+
T Consensus 122 LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 122 LRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 334444555554 344566666665432111 223333 34445667788888888888776533
No 471
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.19 E-value=6.2e+02 Score=23.60 Aligned_cols=54 Identities=13% Similarity=0.115 Sum_probs=29.3
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH---H---HHHHHhcCCHHHHHHHHHHHHH
Q 006636 398 YVREQEPEKAEELLMTMIESGFHPNVVIFTT---I---ISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---l---i~~~~~~g~~~~A~~~~~~m~~ 451 (637)
-+..+++.+|+++|+++....+..+..-|.. + +-++.-.++.-.+...+++..+
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 3467788888888888776544433333322 1 1122223455555555665555
No 472
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=23.13 E-value=4e+02 Score=21.46 Aligned_cols=62 Identities=21% Similarity=0.159 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006636 455 SPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGV------------------HPQKSTFLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 455 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~------------------~p~~~~~~~l~~~~~~~g~~~eA~~~~ 516 (637)
.|..++..-|...+.-+.+ .+..++++|.+.|. .+-.+.+...+..+...|++++|.+++
T Consensus 16 ~~~~vtl~elA~~l~cS~R--n~r~lLkkm~~~gWi~W~pg~GRG~~S~L~~l~~~~~~~~~~~~~~l~~g~~~~a~~ll 93 (115)
T PF12793_consen 16 QPVEVTLDELAELLFCSRR--NARTLLKKMQEEGWITWQPGRGRGNRSQLTFLKSPEELLEQQAEELLEQGKYEQALQLL 93 (115)
T ss_pred CCcceeHHHHHHHhCCCHH--HHHHHHHHHHHCCCeeeeCCCCCCCCCeeEEeeCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3455566666665543332 46777788876542 112456777788889999999999998
Q ss_pred HH
Q 006636 517 SK 518 (637)
Q Consensus 517 ~~ 518 (637)
+.
T Consensus 94 ~~ 95 (115)
T PF12793_consen 94 DF 95 (115)
T ss_pred Hh
Confidence 74
No 473
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=22.77 E-value=3.5e+02 Score=20.58 Aligned_cols=14 Identities=21% Similarity=0.285 Sum_probs=6.0
Q ss_pred CCHHHHHHHHHHHH
Q 006636 156 GNMEEAMDTFWKMK 169 (637)
Q Consensus 156 g~~~~A~~~~~~m~ 169 (637)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 34444444444444
No 474
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=22.70 E-value=6.4e+02 Score=23.59 Aligned_cols=114 Identities=11% Similarity=0.029 Sum_probs=50.7
Q ss_pred CChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHH
Q 006636 121 KRFNSIHSIMSQVEENGMDPDS-IFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTS-TYNTLIKGYGIAGKPEESVK 198 (637)
Q Consensus 121 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~ 198 (637)
..++.|...|.+.+.. .|+. .-|+.-+..+.+..+++.+..=-.+..+. .|+.+ ....+..+......+++|+.
T Consensus 24 k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred hhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHHHH
Confidence 3445555555555443 2333 33444444555555555554444443332 23332 22333344455556666666
Q ss_pred HHHHHHhc---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006636 199 LLDLMSRE---GNVKPNLRTYNVLVRAWCNEKNITEAWNVMHK 238 (637)
Q Consensus 199 ~~~~m~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 238 (637)
.+.+.... ..+++-...+..|..+--+.=...+..++.++
T Consensus 100 ~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 100 VLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 66555321 11223334445444443333334444444433
No 475
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=22.51 E-value=7.4e+02 Score=24.26 Aligned_cols=19 Identities=5% Similarity=0.158 Sum_probs=11.1
Q ss_pred HHcCCHHHHHHHHHHHHHC
Q 006636 399 VREQEPEKAEELLMTMIES 417 (637)
Q Consensus 399 ~~~g~~~~A~~~~~~~~~~ 417 (637)
.+.|+..+|.+.|+.+.+.
T Consensus 286 RklGrlrEA~K~~RDL~ke 304 (556)
T KOG3807|consen 286 RKLGRLREAVKIMRDLMKE 304 (556)
T ss_pred HHhhhHHHHHHHHHHHhhh
Confidence 3556666666666665543
No 476
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=22.46 E-value=3.7e+02 Score=21.50 Aligned_cols=31 Identities=16% Similarity=0.067 Sum_probs=18.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006636 394 LAKGYVREQEPEKAEELLMTMIESGFHPNVVI 425 (637)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 425 (637)
+++-+.+|...++|+++++-|.+.| ..+...
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~ 97 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEE 97 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHH
Confidence 3455566677777777777776665 444433
No 477
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=22.08 E-value=2.6e+02 Score=22.28 Aligned_cols=45 Identities=24% Similarity=0.267 Sum_probs=30.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006636 78 LMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKR 122 (637)
Q Consensus 78 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 122 (637)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 455666666667778888888776666666666666666666654
No 478
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.96 E-value=3.9e+02 Score=20.86 Aligned_cols=16 Identities=19% Similarity=0.217 Sum_probs=7.5
Q ss_pred HHhcCChhHHHHHHHH
Q 006636 468 YSEARQPWRAEEILQI 483 (637)
Q Consensus 468 ~~~~g~~~~A~~~~~~ 483 (637)
|+..|+.+.|.+-|+.
T Consensus 82 ys~~G~~e~a~~eFet 97 (121)
T COG4259 82 YSNSGKDEQAVREFET 97 (121)
T ss_pred HhhcCChHHHHHHHHH
Confidence 4444444444444443
No 479
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.61 E-value=3.5e+02 Score=20.11 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=15.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC
Q 006636 394 LAKGYVREQEPEKAEELLMTMIESG 418 (637)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~~~~~ 418 (637)
+++.+.+|.--++|+++++-+.+.|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3445556666666666666666655
No 480
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.55 E-value=1.2e+03 Score=26.15 Aligned_cols=99 Identities=10% Similarity=0.113 Sum_probs=55.0
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 006636 117 LTIQKRFNSIHSIMSQVEENGMDP---DSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKP 193 (637)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 193 (637)
+.+.+.+++|+.+.+.... ..+ -...+...|..+.-.|++++|-...-.|... +..-|-..+..+...++.
T Consensus 366 ll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccccc
Confidence 4455566666665543322 223 2345666677777777777777777777653 556666666666666655
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 006636 194 EESVKLLDLMSREGNVKPNLRTYNVLVRAWCN 225 (637)
Q Consensus 194 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 225 (637)
.....+ ++. +....+...|..++..+..
T Consensus 440 ~~Ia~~---lPt-~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 440 TDIAPY---LPT-GPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred chhhcc---CCC-CCcccCchHHHHHHHHHHH
Confidence 443222 222 2112345566666666655
No 481
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=21.30 E-value=2.9e+02 Score=26.74 Aligned_cols=65 Identities=11% Similarity=0.089 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHC
Q 006636 387 DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTT-IISGWCSDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~ 452 (637)
|+..|...+.--.+.|.+.+...+|.+..+.. |.|+..|-. --.-+..+++++.+..+|...+..
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~ 171 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRM 171 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhcc
Confidence 44444444433334445555555555555442 444444432 222344455555555555555543
No 482
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.09 E-value=7.7e+02 Score=26.73 Aligned_cols=86 Identities=12% Similarity=0.086 Sum_probs=62.1
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006636 398 YVREQEPEKAEELLMTMIESGFHPN------VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEA 471 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 471 (637)
..+..++..+.+.|..-.+. ++.| ......|-.+|....+.+.|.++++++.+.+.+ ++.+-..+..+..+.
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~-~~l~q~~~~~~~~~E 441 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ-SPLCQLLMLQSFLAE 441 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHh
Confidence 34667788888888765442 1222 234567777888999999999999999886432 555666667788899
Q ss_pred CChhHHHHHHHHHH
Q 006636 472 RQPWRAEEILQIMK 485 (637)
Q Consensus 472 g~~~~A~~~~~~m~ 485 (637)
|.-++|+.......
T Consensus 442 ~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 442 DKSEEALTCLQKIK 455 (872)
T ss_pred cchHHHHHHHHHHH
Confidence 99999998876653
No 483
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.89 E-value=1.4e+03 Score=26.95 Aligned_cols=123 Identities=8% Similarity=0.063 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006636 179 TYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPN----LRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTI 254 (637)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 254 (637)
-|..+++.+-+.+-.+.+.++-....+. .+++ ..+++.+..-....|.+-+|...+-.-... ..-......+
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~--l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRql 1060 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN--LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQL 1060 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHH
Confidence 3667778888888888888887776654 2333 345677777778888888877665432211 1112344556
Q ss_pred HHHHHHcCCHH------------HHHH-HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 006636 255 ATAYAQNGEAD------------QAEE-VIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRF 305 (637)
Q Consensus 255 i~~~~~~g~~~------------~A~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 305 (637)
+..+..+|.++ +... +++..-+...-.....|..|-..+...+++.+|-.+
T Consensus 1061 vivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1061 VIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 66666776654 2333 222222222222334566666667778888776544
No 484
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.89 E-value=8.5e+02 Score=24.35 Aligned_cols=16 Identities=6% Similarity=-0.035 Sum_probs=8.4
Q ss_pred HcCCHhhHHHHHHHHh
Q 006636 330 EIMDRDGVDEVLALMK 345 (637)
Q Consensus 330 ~~~~~~~a~~~~~~~~ 345 (637)
..++++.|..++....
T Consensus 195 glk~fe~Al~~~e~~v 210 (422)
T KOG2582|consen 195 GLKRFERALYLLEICV 210 (422)
T ss_pred ccccHHHHHHHHHHHH
Confidence 4455555555555544
No 485
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=20.72 E-value=3.3e+02 Score=21.66 Aligned_cols=45 Identities=22% Similarity=0.172 Sum_probs=28.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006636 464 LMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGL 508 (637)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 508 (637)
++..+...+..-.|.++++.+.+.+..++..|.-..++.+...|.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 344444555555677777777766666666666666666666664
No 486
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=20.53 E-value=9.3e+02 Score=24.67 Aligned_cols=89 Identities=16% Similarity=0.179 Sum_probs=49.8
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--------HHHcCCHHHHHHHHHHHHH
Q 006636 345 KEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKG--------YVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 345 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~ 416 (637)
....+.||..+.+-+.+.++..-..+....+|+-..+.+ .|-..-+-+||-. -.+...-++++++++.|..
T Consensus 175 dtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~ 253 (669)
T KOG3636|consen 175 DTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPA 253 (669)
T ss_pred hccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCch
Confidence 344567888887777777777777777777777777654 2332222222211 1244556777777777654
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 006636 417 SGFHPNVVIFTTIISGWC 434 (637)
Q Consensus 417 ~~~~~~~~~~~~li~~~~ 434 (637)
.=--.|+.-+-+|..-|+
T Consensus 254 ~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 254 QLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred hcccccchhHHHHHHHHh
Confidence 311233344444444333
No 487
>PF08195 TRI9: TRI9 protein; InterPro: IPR013265 This entry contains putative genes, of 129 bp, from the Trichothecene gene cluster of Fusarium sporotrichioides and Gibberella zeae (Fusarium graminearum) that encode a predicted protein of 43 amino acids whose function is unknown [, ].
Probab=20.20 E-value=43 Score=20.06 Aligned_cols=14 Identities=21% Similarity=0.487 Sum_probs=10.7
Q ss_pred ccCcccchhhhhcc
Q 006636 582 DADSSLECSWFATT 595 (637)
Q Consensus 582 ~~~k~~g~swi~~~ 595 (637)
|....|..||.|+-
T Consensus 10 ~~~~dp~vswle~~ 23 (43)
T PF08195_consen 10 SYDMDPDVSWLEVC 23 (43)
T ss_pred cccCCCCccHHHhh
Confidence 45668999999873
Done!