Query 006636
Match_columns 637
No_of_seqs 846 out of 4159
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 04:54:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006636.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006636hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.7E-40 5.9E-45 359.4 44.8 441 68-522 80-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.9E-39 6.6E-44 351.1 36.8 459 82-581 63-579 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-27 3.9E-32 244.0 49.3 382 78-507 5-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.2E-27 4.3E-32 243.7 49.1 365 149-525 6-371 (388)
5 4g26_A Pentatricopeptide repea 100.0 2.3E-28 7.8E-33 253.4 25.7 202 128-330 11-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 2.9E-28 1E-32 252.6 25.6 213 266-504 8-221 (501)
7 2gw1_A Mitochondrial precursor 99.9 6.4E-24 2.2E-28 224.8 38.6 442 71-524 5-480 (514)
8 2gw1_A Mitochondrial precursor 99.9 2.1E-23 7.1E-28 220.8 38.4 435 107-551 6-484 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 8.8E-23 3E-27 212.2 41.3 341 90-465 10-370 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 1.6E-22 5.4E-27 210.2 42.3 331 67-430 21-370 (450)
11 3fp2_A TPR repeat-containing p 99.9 2.7E-22 9.2E-27 213.6 38.4 434 71-525 24-494 (537)
12 3fp2_A TPR repeat-containing p 99.9 4.3E-22 1.5E-26 212.0 28.9 433 106-583 24-493 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 7.4E-19 2.5E-23 176.3 41.4 97 107-205 3-99 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 8.6E-19 2.9E-23 175.8 40.9 344 71-469 2-351 (359)
15 2xm6_A Protein corresponding t 99.9 3.9E-17 1.3E-21 171.3 52.8 365 91-489 26-434 (490)
16 2xm6_A Protein corresponding t 99.9 6E-17 2.1E-21 169.8 54.2 364 126-523 26-433 (490)
17 2ooe_A Cleavage stimulation fa 99.9 7.3E-17 2.5E-21 171.0 49.0 422 69-524 10-494 (530)
18 3hym_B Cell division cycle pro 99.8 2.5E-18 8.7E-23 170.2 32.0 283 143-468 23-314 (330)
19 3hym_B Cell division cycle pro 99.8 3.3E-18 1.1E-22 169.5 32.2 292 211-510 20-322 (330)
20 2ooe_A Cleavage stimulation fa 99.8 1.7E-16 5.8E-21 168.2 45.4 390 68-486 42-491 (530)
21 4g1t_A Interferon-induced prot 99.8 8.5E-18 2.9E-22 175.7 34.0 288 298-592 153-470 (472)
22 1fch_A Peroxisomal targeting s 99.8 1.8E-18 6.3E-23 174.3 24.3 310 186-520 34-357 (368)
23 1fch_A Peroxisomal targeting s 99.8 8.2E-18 2.8E-22 169.5 27.0 304 154-483 37-355 (368)
24 4eqf_A PEX5-related protein; a 99.8 4.2E-18 1.4E-22 171.6 20.5 277 213-520 65-354 (365)
25 4eqf_A PEX5-related protein; a 99.8 1.7E-17 5.8E-22 167.1 24.5 236 284-525 66-313 (365)
26 1xi4_A Clathrin heavy chain; a 99.8 9.6E-15 3.3E-19 160.3 45.6 382 76-518 989-1380(1630)
27 4g1t_A Interferon-induced prot 99.8 5.3E-16 1.8E-20 162.0 34.6 384 71-488 50-460 (472)
28 1b89_A Protein (clathrin heavy 99.8 7.3E-18 2.5E-22 166.4 17.3 262 144-444 34-303 (449)
29 1xi4_A Clathrin heavy chain; a 99.8 1E-14 3.5E-19 160.1 43.3 219 225-484 1088-1306(1630)
30 3cv0_A Peroxisome targeting si 99.8 1.6E-16 5.6E-21 156.9 27.2 266 70-342 19-310 (327)
31 3cv0_A Peroxisome targeting si 99.8 1.6E-16 5.6E-21 156.9 26.7 279 214-522 22-315 (327)
32 3mkr_A Coatomer subunit epsilo 99.8 4E-16 1.4E-20 150.9 27.4 254 223-494 9-269 (291)
33 1b89_A Protein (clathrin heavy 99.8 6.6E-17 2.3E-21 159.6 21.9 377 84-518 15-413 (449)
34 3mkr_A Coatomer subunit epsilo 99.7 1.6E-15 5.4E-20 146.7 26.7 253 79-348 6-265 (291)
35 3spa_A Mtrpol, DNA-directed RN 99.7 3.2E-17 1.1E-21 174.3 11.1 117 389-505 128-248 (1134)
36 3spa_A Mtrpol, DNA-directed RN 99.7 1.1E-16 3.9E-21 170.2 13.7 151 141-297 126-286 (1134)
37 3uq3_A Heat shock protein STI1 99.7 4.3E-14 1.5E-18 134.1 26.3 222 251-486 8-235 (258)
38 3uq3_A Heat shock protein STI1 99.6 5.1E-14 1.7E-18 133.6 25.9 225 214-452 6-236 (258)
39 2pl2_A Hypothetical conserved 99.6 2.6E-14 9E-19 131.8 22.5 197 106-309 4-211 (217)
40 3e4b_A ALGK; tetratricopeptide 99.6 1.4E-14 4.7E-19 149.5 21.9 224 249-488 142-388 (452)
41 2pl2_A Hypothetical conserved 99.6 5.7E-14 1.9E-18 129.5 22.3 198 139-343 2-210 (217)
42 3e4b_A ALGK; tetratricopeptide 99.6 3.7E-14 1.3E-18 146.3 23.1 342 78-453 9-388 (452)
43 2h6f_A Protein farnesyltransfe 99.6 1.8E-13 6.2E-18 136.8 26.7 252 69-329 94-364 (382)
44 3u4t_A TPR repeat-containing p 99.6 2.9E-13 9.9E-18 129.7 25.6 235 286-524 6-252 (272)
45 1ouv_A Conserved hypothetical 99.6 3.1E-12 1.1E-16 122.6 32.2 224 71-313 5-252 (273)
46 2ho1_A Type 4 fimbrial biogene 99.6 6.5E-13 2.2E-17 125.6 27.0 201 72-277 37-238 (252)
47 1ouv_A Conserved hypothetical 99.6 6.5E-12 2.2E-16 120.4 33.6 111 366-485 127-249 (273)
48 4e6h_A MRNA 3'-END-processing 99.6 1.6E-10 5.5E-15 123.2 47.1 432 88-525 48-573 (679)
49 2ho1_A Type 4 fimbrial biogene 99.6 1.6E-12 5.6E-17 122.8 28.7 203 107-313 37-239 (252)
50 3u4t_A TPR repeat-containing p 99.6 6.1E-13 2.1E-17 127.4 26.0 245 74-324 5-261 (272)
51 2vq2_A PILW, putative fimbrial 99.6 2E-12 6.7E-17 119.7 27.6 200 71-274 7-208 (225)
52 2vq2_A PILW, putative fimbrial 99.6 2.4E-12 8.1E-17 119.1 28.1 204 106-312 7-211 (225)
53 2h6f_A Protein farnesyltransfe 99.6 1.2E-12 3.9E-17 130.9 27.3 227 180-414 100-344 (382)
54 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.1E-13 3.7E-18 132.8 19.3 222 84-312 17-244 (275)
55 2q7f_A YRRB protein; TPR, prot 99.6 2.8E-13 9.4E-18 127.3 21.6 202 70-277 21-222 (243)
56 2q7f_A YRRB protein; TPR, prot 99.6 3.6E-13 1.2E-17 126.5 21.5 201 106-312 22-222 (243)
57 1xnf_A Lipoprotein NLPI; TPR, 99.6 2E-13 6.8E-18 131.0 20.0 222 285-516 45-269 (275)
58 4e6h_A MRNA 3'-END-processing 99.5 1.7E-10 5.9E-15 123.0 42.5 426 67-501 61-582 (679)
59 3sf4_A G-protein-signaling mod 99.5 6.7E-13 2.3E-17 135.2 20.6 156 354-509 188-363 (406)
60 4a1s_A PINS, partner of inscut 99.5 7E-13 2.4E-17 135.5 18.8 279 214-523 49-373 (411)
61 3sf4_A G-protein-signaling mod 99.5 1.3E-12 4.4E-17 133.1 20.7 85 355-439 269-363 (406)
62 2ond_A Cleavage stimulation fa 99.5 5.6E-11 1.9E-15 116.0 29.9 222 300-525 33-273 (308)
63 4a1s_A PINS, partner of inscut 99.5 1.7E-12 5.9E-17 132.6 19.3 278 177-486 48-371 (411)
64 2ond_A Cleavage stimulation fa 99.5 6.3E-11 2.2E-15 115.6 28.7 236 71-312 7-270 (308)
65 3vtx_A MAMA; tetratricopeptide 99.4 2.3E-11 7.8E-16 108.7 23.1 24 286-309 8-31 (184)
66 3vtx_A MAMA; tetratricopeptide 99.4 2.3E-11 7.9E-16 108.7 23.0 166 317-486 4-169 (184)
67 3ro2_A PINS homolog, G-protein 99.4 2.1E-12 7.2E-17 127.5 17.7 277 214-522 6-332 (338)
68 3ro2_A PINS homolog, G-protein 99.4 6.9E-12 2.4E-16 123.8 20.9 63 355-417 265-332 (338)
69 3nf1_A KLC 1, kinesin light ch 99.4 1.8E-12 6.1E-17 126.7 14.9 245 66-311 21-306 (311)
70 3ulq_A Response regulator aspa 99.4 2.6E-11 9E-16 122.5 23.0 233 219-485 109-366 (383)
71 3ulq_A Response regulator aspa 99.4 2.7E-11 9.1E-16 122.5 23.0 231 289-522 109-368 (383)
72 4abn_A Tetratricopeptide repea 99.4 1.3E-11 4.3E-16 128.2 20.6 214 299-519 84-318 (474)
73 4abn_A Tetratricopeptide repea 99.4 2.2E-11 7.6E-16 126.3 20.7 216 158-381 84-320 (474)
74 3nf1_A KLC 1, kinesin light ch 99.4 6.1E-12 2.1E-16 122.8 14.6 246 248-523 27-308 (311)
75 1hz4_A MALT regulatory protein 99.3 9E-10 3.1E-14 110.7 26.7 168 355-522 137-322 (373)
76 1hz4_A MALT regulatory protein 99.3 2.4E-09 8.2E-14 107.5 29.8 160 151-310 23-201 (373)
77 3as5_A MAMA; tetratricopeptide 99.3 4.4E-10 1.5E-14 100.1 21.0 165 72-241 8-172 (186)
78 3q15_A PSP28, response regulat 99.3 1.2E-09 4.2E-14 109.9 26.8 231 220-485 108-363 (378)
79 3q15_A PSP28, response regulat 99.3 5.4E-10 1.9E-14 112.5 24.0 309 74-416 12-364 (378)
80 4gyw_A UDP-N-acetylglucosamine 99.3 2.8E-10 9.5E-15 122.9 21.7 168 69-241 6-173 (723)
81 3as5_A MAMA; tetratricopeptide 99.3 7E-10 2.4E-14 98.7 20.9 161 110-275 11-171 (186)
82 4gyw_A UDP-N-acetylglucosamine 99.2 4.3E-10 1.5E-14 121.4 21.5 166 106-276 8-173 (723)
83 4i17_A Hypothetical protein; T 99.2 1.2E-09 4.2E-14 101.2 21.9 130 320-451 9-145 (228)
84 4i17_A Hypothetical protein; T 99.2 1.3E-09 4.4E-14 101.0 21.5 196 71-278 6-210 (228)
85 3mv2_B Coatomer subunit epsilo 99.1 1.8E-08 6.3E-13 95.3 24.1 143 302-449 85-237 (310)
86 3edt_B KLC 2, kinesin light ch 99.1 6E-10 2E-14 106.8 14.3 228 84-312 13-281 (283)
87 3edt_B KLC 2, kinesin light ch 99.1 1.3E-09 4.4E-14 104.4 15.5 123 119-241 13-155 (283)
88 1qqe_A Vesicular transport pro 99.1 2.5E-09 8.5E-14 103.3 16.8 167 354-522 78-269 (292)
89 3mv2_B Coatomer subunit epsilo 99.1 7.4E-08 2.5E-12 91.2 25.2 246 79-348 20-283 (310)
90 2uy1_A Cleavage stimulation fa 99.1 5.2E-07 1.8E-11 93.4 33.8 125 389-521 287-412 (493)
91 1qqe_A Vesicular transport pro 99.0 4.4E-09 1.5E-13 101.5 16.9 199 255-485 44-267 (292)
92 2fo7_A Synthetic consensus TPR 99.0 1.9E-08 6.6E-13 83.8 17.6 125 393-520 6-130 (136)
93 2fo7_A Synthetic consensus TPR 99.0 2.9E-08 9.9E-13 82.7 18.2 21 78-98 7-27 (136)
94 3qky_A Outer membrane assembly 99.0 1.5E-08 5E-13 96.1 17.9 59 428-486 153-223 (261)
95 3urz_A Uncharacterized protein 99.0 2.7E-08 9.2E-13 90.5 18.8 126 147-277 59-186 (208)
96 3urz_A Uncharacterized protein 99.0 2.1E-08 7.1E-13 91.3 17.9 131 358-494 59-191 (208)
97 3qky_A Outer membrane assembly 99.0 3.2E-08 1.1E-12 93.7 18.9 100 71-171 14-126 (261)
98 3dra_A Protein farnesyltransfe 99.0 6.9E-07 2.4E-11 85.4 28.0 241 79-325 39-300 (306)
99 2pzi_A Probable serine/threoni 99.0 5.3E-09 1.8E-13 113.5 14.9 173 329-508 402-583 (681)
100 2uy1_A Cleavage stimulation fa 98.9 3E-06 1E-10 87.6 34.3 360 86-485 28-411 (493)
101 3rjv_A Putative SEL1 repeat pr 98.9 1.3E-07 4.6E-12 86.1 21.4 175 126-313 5-198 (212)
102 2pzi_A Probable serine/threoni 98.9 1.6E-08 5.4E-13 109.8 17.4 170 83-260 402-580 (681)
103 4ga2_A E3 SUMO-protein ligase 98.9 3.3E-09 1.1E-13 90.8 9.7 144 360-508 4-149 (150)
104 3rjv_A Putative SEL1 repeat pr 98.9 1.8E-07 6.1E-12 85.3 20.8 176 89-279 3-199 (212)
105 2r5s_A Uncharacterized protein 98.9 1.6E-08 5.6E-13 89.2 12.8 160 75-238 9-169 (176)
106 3qou_A Protein YBBN; thioredox 98.9 7.3E-08 2.5E-12 92.6 18.1 162 143-309 118-281 (287)
107 2r5s_A Uncharacterized protein 98.9 3.9E-08 1.3E-12 86.7 14.9 159 111-274 10-170 (176)
108 3dra_A Protein farnesyltransfe 98.9 2.1E-06 7.1E-11 82.1 27.8 217 124-381 50-286 (306)
109 2yhc_A BAMD, UPF0169 lipoprote 98.9 2.5E-07 8.4E-12 85.3 20.5 187 72-279 4-215 (225)
110 4ga2_A E3 SUMO-protein ligase 98.8 1.3E-08 4.3E-13 87.2 10.2 142 80-227 5-148 (150)
111 3qou_A Protein YBBN; thioredox 98.8 9.6E-08 3.3E-12 91.7 17.5 158 322-483 121-280 (287)
112 2yhc_A BAMD, UPF0169 lipoprote 98.8 2.3E-07 8E-12 85.4 19.2 186 318-524 4-215 (225)
113 2vsy_A XCC0866; transferase, g 98.8 1.3E-07 4.6E-12 100.6 19.1 154 331-488 2-158 (568)
114 2vsy_A XCC0866; transferase, g 98.8 1.3E-07 4.3E-12 100.8 18.7 154 85-243 2-158 (568)
115 2ifu_A Gamma-SNAP; membrane fu 98.8 1.4E-07 4.6E-12 91.7 15.6 155 355-514 78-253 (307)
116 3q7a_A Farnesyltransferase alp 98.7 7.2E-06 2.5E-10 79.2 26.6 231 76-312 58-331 (349)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.7 6.6E-07 2.3E-11 81.4 18.1 127 393-524 11-152 (213)
118 3gyz_A Chaperone protein IPGC; 98.7 2.5E-07 8.7E-12 78.7 14.1 103 388-494 36-138 (151)
119 2ifu_A Gamma-SNAP; membrane fu 98.7 2.7E-07 9.1E-12 89.7 16.1 155 320-479 78-253 (307)
120 4gco_A Protein STI-1; structur 98.7 4.7E-07 1.6E-11 74.6 14.0 100 389-492 14-113 (126)
121 3u3w_A Transcriptional activat 98.7 7.6E-06 2.6E-10 78.7 24.7 165 358-522 80-266 (293)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.6 3.9E-06 1.3E-10 76.2 20.0 126 146-277 10-150 (213)
123 4f3v_A ESX-1 secretion system 98.6 1.2E-06 4.3E-11 81.7 16.3 192 295-492 18-240 (282)
124 4gco_A Protein STI-1; structur 98.6 1.7E-06 5.7E-11 71.2 15.5 93 75-169 16-108 (126)
125 3q7a_A Farnesyltransferase alp 98.6 3.3E-05 1.1E-09 74.6 26.6 190 111-333 58-257 (349)
126 1a17_A Serine/threonine protei 98.6 2.1E-06 7.2E-11 74.3 16.9 130 389-522 14-146 (166)
127 3u3w_A Transcriptional activat 98.6 6.9E-06 2.4E-10 79.0 22.1 127 184-310 82-223 (293)
128 1na0_A Designed protein CTPR3; 98.6 2.2E-06 7.5E-11 69.9 15.9 96 389-486 10-105 (125)
129 1a17_A Serine/threonine protei 98.6 2.7E-06 9.1E-11 73.7 17.3 24 76-99 17-40 (166)
130 1na0_A Designed protein CTPR3; 98.6 2.7E-06 9.2E-11 69.3 16.1 98 72-171 9-106 (125)
131 2qfc_A PLCR protein; TPR, HTH, 98.6 3.8E-06 1.3E-10 80.8 19.4 167 356-522 78-266 (293)
132 2vgx_A Chaperone SYCD; alterna 98.6 2.4E-07 8.1E-12 78.9 9.6 97 388-486 21-117 (148)
133 2qfc_A PLCR protein; TPR, HTH, 98.6 8.6E-06 3E-10 78.3 21.8 165 320-485 77-264 (293)
134 2e2e_A Formate-dependent nitri 98.6 5.4E-07 1.8E-11 79.4 12.2 119 365-486 22-143 (177)
135 3gw4_A Uncharacterized protein 98.6 7.2E-07 2.5E-11 80.4 13.2 158 364-522 3-176 (203)
136 3gyz_A Chaperone protein IPGC; 98.6 1.4E-06 4.7E-11 74.1 13.9 104 352-459 35-138 (151)
137 2lni_A Stress-induced-phosphop 98.5 2.6E-06 8.9E-11 70.5 15.2 122 67-191 11-132 (133)
138 4f3v_A ESX-1 secretion system 98.5 3.8E-06 1.3E-10 78.4 17.4 130 179-312 104-237 (282)
139 2c2l_A CHIP, carboxy terminus 98.5 7.6E-07 2.6E-11 85.1 12.8 97 142-241 4-100 (281)
140 4gcn_A Protein STI-1; structur 98.5 2.1E-06 7.1E-11 70.7 13.6 105 389-496 9-119 (127)
141 2vyi_A SGTA protein; chaperone 98.5 3.8E-06 1.3E-10 69.1 15.2 120 70-192 10-129 (131)
142 2vyi_A SGTA protein; chaperone 98.5 4.4E-06 1.5E-10 68.7 15.6 115 390-508 14-129 (131)
143 3gw4_A Uncharacterized protein 98.5 1.4E-06 4.9E-11 78.4 13.4 157 83-240 3-174 (203)
144 3dss_A Geranylgeranyl transfer 98.5 4.9E-05 1.7E-09 73.1 24.5 153 335-493 91-271 (331)
145 3upv_A Heat shock protein STI1 98.5 3.4E-06 1.2E-10 69.3 14.5 96 389-486 5-100 (126)
146 2e2e_A Formate-dependent nitri 98.5 2.1E-06 7.1E-11 75.5 13.8 121 83-206 21-144 (177)
147 2lni_A Stress-induced-phosphop 98.5 3.2E-06 1.1E-10 69.9 14.2 97 107-205 16-112 (133)
148 2c2l_A CHIP, carboxy terminus 98.5 8.4E-07 2.9E-11 84.8 11.7 97 107-205 4-100 (281)
149 3dss_A Geranylgeranyl transfer 98.5 0.00018 6.3E-09 69.1 27.8 182 72-259 26-238 (331)
150 2vgx_A Chaperone SYCD; alterna 98.4 1.4E-06 4.8E-11 74.0 11.2 95 109-205 23-117 (148)
151 1p5q_A FKBP52, FK506-binding p 98.4 5.4E-06 1.8E-10 81.4 16.7 131 388-522 147-294 (336)
152 1p5q_A FKBP52, FK506-binding p 98.4 5.1E-06 1.7E-10 81.6 16.5 87 143-232 197-283 (336)
153 2xcb_A PCRH, regulatory protei 98.4 2.9E-06 9.9E-11 71.5 11.6 94 390-485 20-113 (142)
154 3upv_A Heat shock protein STI1 98.4 9.9E-06 3.4E-10 66.4 14.4 98 353-452 4-101 (126)
155 1elr_A TPR2A-domain of HOP; HO 98.4 4.6E-06 1.6E-10 68.6 12.1 109 389-500 5-119 (131)
156 1elw_A TPR1-domain of HOP; HOP 98.3 1.7E-05 5.8E-10 63.7 15.2 96 389-486 5-100 (118)
157 3q49_B STIP1 homology and U bo 98.3 1.9E-05 6.3E-10 65.8 15.8 97 387-485 8-104 (137)
158 1elw_A TPR1-domain of HOP; HOP 98.3 2.5E-05 8.4E-10 62.7 15.8 22 77-98 9-30 (118)
159 3sz7_A HSC70 cochaperone (SGT) 98.3 1.4E-05 4.8E-10 69.1 14.5 98 387-486 10-107 (164)
160 1hxi_A PEX5, peroxisome target 98.3 6.4E-06 2.2E-10 67.1 11.4 92 393-486 22-113 (121)
161 3sz7_A HSC70 cochaperone (SGT) 98.3 2E-05 6.8E-10 68.1 14.5 100 70-171 9-108 (164)
162 1elr_A TPR2A-domain of HOP; HO 98.3 1.2E-05 4E-10 66.1 12.3 111 354-467 5-121 (131)
163 2fbn_A 70 kDa peptidylprolyl i 98.2 2.4E-05 8.2E-10 70.1 15.3 121 356-478 41-176 (198)
164 4gcn_A Protein STI-1; structur 98.2 2.7E-05 9.1E-10 64.0 13.9 58 75-133 11-68 (127)
165 2fbn_A 70 kDa peptidylprolyl i 98.2 2.4E-05 8.3E-10 70.1 14.8 98 71-170 37-150 (198)
166 2xcb_A PCRH, regulatory protei 98.2 2.2E-05 7.4E-10 66.0 13.4 97 72-170 18-114 (142)
167 2kck_A TPR repeat; tetratricop 98.2 1.3E-05 4.4E-10 63.7 11.4 93 391-485 9-104 (112)
168 3q49_B STIP1 homology and U bo 98.2 3.6E-05 1.2E-09 63.9 14.6 100 351-452 7-106 (137)
169 2dba_A Smooth muscle cell asso 98.2 4.5E-05 1.5E-09 64.2 15.3 112 69-184 25-140 (148)
170 2dba_A Smooth muscle cell asso 98.2 5.9E-05 2E-09 63.5 15.8 96 353-451 28-127 (148)
171 2kck_A TPR repeat; tetratricop 98.2 1.6E-05 5.5E-10 63.1 11.5 96 74-171 8-106 (112)
172 1hxi_A PEX5, peroxisome target 98.2 1.9E-05 6.5E-10 64.2 11.3 95 356-452 20-114 (121)
173 3ro3_A PINS homolog, G-protein 98.1 2.3E-05 8E-10 67.0 11.8 134 389-522 10-158 (164)
174 3rkv_A Putative peptidylprolyl 98.1 3.6E-05 1.2E-09 66.3 12.6 96 390-486 13-125 (162)
175 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 5.2E-05 1.8E-09 77.8 15.6 127 389-519 269-412 (457)
176 2xev_A YBGF; tetratricopeptide 98.1 8.6E-05 2.9E-09 60.8 14.1 91 394-486 8-104 (129)
177 4b4t_Q 26S proteasome regulato 98.1 0.00026 9E-09 72.0 20.4 198 254-451 10-244 (434)
178 2hr2_A Hypothetical protein; a 98.0 0.00012 4.2E-09 61.4 14.2 100 425-524 13-133 (159)
179 4b4t_Q 26S proteasome regulato 98.0 0.0003 1E-08 71.6 20.3 196 289-484 10-242 (434)
180 1dce_A Protein (RAB geranylger 98.0 0.00013 4.5E-09 76.6 17.5 189 367-570 43-244 (567)
181 1ihg_A Cyclophilin 40; ppiase 98.0 5.4E-05 1.8E-09 75.2 13.6 90 422-514 272-362 (370)
182 3k9i_A BH0479 protein; putativ 98.0 1.7E-05 5.9E-10 64.0 8.2 86 366-452 3-90 (117)
183 3ro3_A PINS homolog, G-protein 98.0 4.3E-05 1.5E-09 65.3 10.9 133 354-486 10-157 (164)
184 2xev_A YBGF; tetratricopeptide 98.0 0.00032 1.1E-08 57.3 15.4 22 79-100 9-30 (129)
185 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 9.7E-05 3.3E-09 75.8 14.6 88 143-233 318-405 (457)
186 1wao_1 Serine/threonine protei 97.9 2.7E-05 9.3E-10 80.3 10.3 157 361-520 14-195 (477)
187 2hr2_A Hypothetical protein; a 97.9 0.00027 9.2E-09 59.4 14.4 106 390-496 13-145 (159)
188 3rkv_A Putative peptidylprolyl 97.9 0.00011 3.7E-09 63.3 12.6 100 356-458 14-130 (162)
189 3k9i_A BH0479 protein; putativ 97.9 2E-05 6.7E-10 63.7 6.9 83 86-169 4-88 (117)
190 1wao_1 Serine/threonine protei 97.9 3.7E-05 1.3E-09 79.3 10.3 63 142-205 40-102 (477)
191 1ihg_A Cyclophilin 40; ppiase 97.9 0.00016 5.3E-09 71.8 13.9 91 176-269 272-362 (370)
192 2if4_A ATFKBP42; FKBP-like, al 97.8 3.8E-05 1.3E-09 75.3 9.0 95 425-522 232-328 (338)
193 1zu2_A Mitochondrial import re 97.8 4.5E-05 1.6E-09 64.0 7.2 91 400-494 14-125 (158)
194 1klx_A Cysteine rich protein B 97.8 0.00089 3.1E-08 55.6 14.9 110 368-488 10-127 (138)
195 2l6j_A TPR repeat-containing p 97.8 2.3E-05 7.9E-10 62.3 4.9 63 423-486 4-66 (111)
196 1dce_A Protein (RAB geranylger 97.8 0.0014 4.7E-08 68.9 19.6 137 84-225 40-190 (567)
197 2if4_A ATFKBP42; FKBP-like, al 97.7 7.8E-05 2.7E-09 73.1 9.3 150 71-242 178-328 (338)
198 2l6j_A TPR repeat-containing p 97.7 5.5E-05 1.9E-09 60.0 6.8 93 387-482 3-102 (111)
199 1klx_A Cysteine rich protein B 97.7 0.0015 5E-08 54.3 14.9 80 156-242 39-126 (138)
200 3n71_A Histone lysine methyltr 97.6 0.00037 1.3E-08 71.4 12.7 127 397-523 318-465 (490)
201 2kat_A Uncharacterized protein 97.6 0.0003 1E-08 56.2 9.5 78 372-451 4-81 (115)
202 1zu2_A Mitochondrial import re 97.6 0.00016 5.4E-09 60.7 7.5 100 364-467 13-133 (158)
203 1na3_A Designed protein CTPR2; 97.6 0.001 3.5E-08 50.1 11.7 63 389-452 10-72 (91)
204 2kat_A Uncharacterized protein 97.6 0.0004 1.4E-08 55.5 9.4 61 107-168 19-79 (115)
205 3n71_A Histone lysine methyltr 97.6 0.00038 1.3E-08 71.3 11.4 125 362-486 318-463 (490)
206 1na3_A Designed protein CTPR2; 97.4 0.0016 5.4E-08 49.0 11.1 79 72-152 9-87 (91)
207 3ma5_A Tetratricopeptide repea 97.4 0.00081 2.8E-08 52.1 8.8 64 387-451 6-69 (100)
208 3ma5_A Tetratricopeptide repea 97.2 0.0013 4.6E-08 50.9 8.4 61 142-203 7-67 (100)
209 3ly7_A Transcriptional activat 96.8 0.014 4.9E-07 56.2 13.0 73 420-496 274-346 (372)
210 3ly7_A Transcriptional activat 96.6 0.055 1.9E-06 52.2 15.5 144 103-252 190-347 (372)
211 2kc7_A BFR218_protein; tetratr 96.5 0.0077 2.6E-07 46.1 7.7 55 431-486 8-63 (99)
212 3qwp_A SET and MYND domain-con 96.5 0.019 6.6E-07 57.7 11.9 90 396-485 295-398 (429)
213 3qww_A SET and MYND domain-con 96.4 0.0096 3.3E-07 59.8 9.5 84 401-484 311-408 (433)
214 2kc7_A BFR218_protein; tetratr 96.4 0.029 9.8E-07 42.8 10.2 59 394-453 6-65 (99)
215 3qww_A SET and MYND domain-con 96.4 0.017 5.6E-07 58.1 10.9 87 365-451 310-410 (433)
216 3mkq_A Coatomer beta'-subunit; 96.4 0.17 5.9E-06 55.8 20.4 45 188-239 663-707 (814)
217 3mkq_A Coatomer beta'-subunit; 96.3 0.27 9.2E-06 54.2 21.4 128 79-240 606-734 (814)
218 3bee_A Putative YFRE protein; 96.3 0.036 1.2E-06 41.9 9.8 64 387-451 5-71 (93)
219 3qwp_A SET and MYND domain-con 96.2 0.043 1.5E-06 55.1 12.9 92 360-451 294-399 (429)
220 1pc2_A Mitochondria fission pr 96.2 0.034 1.2E-06 45.9 9.8 83 440-524 15-102 (152)
221 3bee_A Putative YFRE protein; 96.2 0.037 1.3E-06 41.8 9.5 66 420-486 3-71 (93)
222 3u64_A Protein TP_0956; tetrat 96.1 0.88 3E-05 42.0 20.6 93 229-323 179-282 (301)
223 1pc2_A Mitochondria fission pr 95.6 0.11 3.9E-06 42.8 10.4 64 387-451 31-99 (152)
224 3mkq_B Coatomer subunit alpha; 95.5 0.92 3.1E-05 38.4 16.0 102 80-202 13-114 (177)
225 2v5f_A Prolyl 4-hydroxylase su 95.2 0.22 7.4E-06 38.4 10.6 64 388-451 5-74 (104)
226 3mkq_B Coatomer subunit alpha; 95.2 1.3 4.3E-05 37.6 16.2 98 118-237 16-113 (177)
227 2v5f_A Prolyl 4-hydroxylase su 94.9 0.26 8.8E-06 37.9 10.4 70 422-493 4-79 (104)
228 3u64_A Protein TP_0956; tetrat 94.8 0.37 1.3E-05 44.6 12.2 89 369-459 179-278 (301)
229 1wy6_A Hypothetical protein ST 94.6 1.3 4.6E-05 35.2 16.0 138 296-455 20-157 (172)
230 4h7y_A Dual specificity protei 94.2 0.55 1.9E-05 38.3 10.4 52 366-418 73-124 (161)
231 1nzn_A CGI-135 protein, fissio 94.0 0.22 7.4E-06 39.6 7.7 83 441-525 19-106 (126)
232 1wy6_A Hypothetical protein ST 93.9 2 6.7E-05 34.3 14.1 66 213-279 91-156 (172)
233 1nzn_A CGI-135 protein, fissio 93.4 0.34 1.2E-05 38.5 8.0 96 394-493 7-107 (126)
234 4h7y_A Dual specificity protei 93.4 0.6 2.1E-05 38.1 9.4 56 400-456 72-127 (161)
235 4ady_A RPN2, 26S proteasome re 93.4 11 0.00038 41.2 31.7 21 79-99 237-257 (963)
236 3lvg_A Clathrin heavy chain 1; 92.2 9.6E-06 3.3E-10 79.3 -23.5 239 67-343 49-287 (624)
237 4b4t_P 26S proteasome regulato 91.3 13 0.00045 37.2 20.6 164 355-518 139-320 (445)
238 3lvg_A Clathrin heavy chain 1; 91.0 0.015 5.2E-07 57.3 -3.0 218 69-303 80-324 (624)
239 2ff4_A Probable regulatory pro 90.2 1.8 6.3E-05 42.5 11.1 77 425-502 173-254 (388)
240 2ff4_A Probable regulatory pro 89.6 1.6 5.6E-05 42.9 10.2 71 390-461 173-248 (388)
241 4gns_B Protein CSD3, chitin bi 88.6 1.5 5.1E-05 46.9 9.5 54 150-204 345-398 (754)
242 3o48_A Mitochondria fission 1 88.1 5.5 0.00019 31.7 10.1 73 453-525 35-110 (134)
243 4ady_A RPN2, 26S proteasome re 87.8 36 0.0012 37.4 33.7 254 258-520 384-656 (963)
244 4gns_B Protein CSD3, chitin bi 87.7 2.4 8.1E-05 45.4 10.3 49 457-507 612-660 (754)
245 1v54_E Cytochrome C oxidase po 86.9 3.9 0.00013 30.6 7.8 51 473-523 25-75 (109)
246 3o48_A Mitochondria fission 1 85.8 8.1 0.00028 30.7 9.9 72 420-493 37-111 (134)
247 3ffl_A Anaphase-promoting comp 84.7 4.9 0.00017 33.5 8.5 61 74-134 22-90 (167)
248 1y8m_A FIS1; mitochondria, unk 84.2 15 0.00051 29.6 12.1 71 455-525 36-109 (144)
249 4fhn_B Nucleoporin NUP120; pro 83.7 27 0.00094 39.8 17.3 148 358-512 817-990 (1139)
250 4b4t_P 26S proteasome regulato 83.6 38 0.0013 33.8 20.6 97 389-485 138-245 (445)
251 1zbp_A Hypothetical protein VP 83.1 27 0.00092 31.7 14.0 115 397-524 6-131 (273)
252 4fhn_B Nucleoporin NUP120; pro 82.9 29 0.001 39.6 17.1 150 112-268 817-991 (1139)
253 3ffl_A Anaphase-promoting comp 82.7 7.8 0.00027 32.2 8.9 108 112-222 25-164 (167)
254 3txn_A 26S proteasome regulato 82.1 39 0.0013 32.9 16.7 27 284-310 20-46 (394)
255 1v54_E Cytochrome C oxidase po 82.0 7.9 0.00027 29.0 7.7 61 334-395 26-86 (109)
256 2y69_E Cytochrome C oxidase su 80.4 8.7 0.0003 30.5 7.8 51 473-523 68-118 (152)
257 1y8m_A FIS1; mitochondria, unk 80.0 22 0.00075 28.7 12.4 22 430-451 84-105 (144)
258 1qsa_A Protein (soluble lytic 78.3 69 0.0024 33.4 25.4 136 118-265 17-153 (618)
259 2y69_E Cytochrome C oxidase su 73.4 17 0.00057 28.9 7.7 60 335-395 70-129 (152)
260 3txn_A 26S proteasome regulato 71.6 77 0.0026 30.8 20.3 158 358-519 104-281 (394)
261 4b4t_R RPN7, 26S proteasome re 68.4 88 0.003 30.9 14.2 60 75-134 134-195 (429)
262 4b4t_R RPN7, 26S proteasome re 66.9 53 0.0018 32.5 12.2 98 355-452 133-237 (429)
263 1zbp_A Hypothetical protein VP 63.6 36 0.0012 30.9 9.0 53 118-171 8-60 (273)
264 3lpz_A GET4 (YOR164C homolog); 61.8 1.1E+02 0.0037 28.9 20.5 23 216-238 38-60 (336)
265 3esl_A Checkpoint serine/threo 60.7 78 0.0027 27.2 10.2 53 229-281 95-148 (202)
266 3esl_A Checkpoint serine/threo 59.0 87 0.003 26.9 10.5 58 190-247 92-149 (202)
267 2uwj_G Type III export protein 55.1 63 0.0022 24.1 7.3 13 153-165 50-62 (115)
268 2uwj_G Type III export protein 54.5 65 0.0022 24.0 7.5 17 365-381 80-96 (115)
269 2p58_C Putative type III secre 54.2 66 0.0023 24.0 8.3 48 152-205 50-97 (116)
270 2p58_C Putative type III secre 53.4 68 0.0023 24.0 8.3 11 329-339 51-61 (116)
271 3eiq_C Programmed cell death p 50.7 1.5E+02 0.0051 28.3 11.5 74 425-499 219-294 (358)
272 3ltm_A Alpha-REP4; protein eng 48.5 1.3E+02 0.0044 25.7 18.5 142 105-263 31-172 (211)
273 2wpv_A GET4, UPF0363 protein Y 46.4 1.9E+02 0.0064 27.0 21.6 81 351-450 132-215 (312)
274 3ltm_A Alpha-REP4; protein eng 43.7 1.5E+02 0.0052 25.2 18.2 154 351-521 31-184 (211)
275 3lpz_A GET4 (YOR164C homolog); 43.0 2.2E+02 0.0075 26.8 23.6 26 281-306 134-159 (336)
276 2wvi_A Mitotic checkpoint seri 42.5 1.4E+02 0.0047 24.7 8.6 52 442-493 79-131 (164)
277 1qsa_A Protein (soluble lytic 41.9 3.2E+02 0.011 28.4 37.9 395 81-518 15-438 (618)
278 2d2s_A Exocyst complex compone 41.1 1.4E+02 0.0047 26.5 9.1 28 492-519 90-117 (235)
279 4a1g_A Mitotic checkpoint seri 39.7 1.5E+02 0.0052 24.1 9.4 47 232-278 84-131 (152)
280 4b4t_S RPN3, 26S proteasome re 37.4 3.1E+02 0.011 27.6 11.8 27 353-379 231-257 (523)
281 4a1g_A Mitotic checkpoint seri 37.1 1.7E+02 0.0058 23.8 9.7 55 194-248 82-136 (152)
282 2nsz_A Programmed cell death p 36.3 1.5E+02 0.0051 23.3 7.7 23 427-449 11-33 (129)
283 2r9g_A AAA ATPase, central reg 32.8 2.4E+02 0.008 24.2 10.0 17 262-278 28-44 (204)
284 2wvi_A Mitotic checkpoint seri 31.1 2.2E+02 0.0077 23.5 9.9 51 196-246 79-129 (164)
285 2wpv_A GET4, UPF0363 protein Y 30.8 3.3E+02 0.011 25.3 22.8 110 112-236 38-157 (312)
286 3pvs_A Replication-associated 30.2 4.1E+02 0.014 26.2 13.0 35 296-330 268-302 (447)
287 3bge_A Predicted ATPase; struc 29.7 2.6E+02 0.009 23.8 8.7 18 262-279 21-38 (201)
288 3eiq_C Programmed cell death p 29.6 1.6E+02 0.0056 28.0 8.1 26 74-99 56-81 (358)
289 4gq2_M Nucleoporin NUP120; bet 28.7 3.6E+02 0.012 29.9 11.8 51 394-449 816-866 (950)
290 2ion_A PDCD4, programmed cell 27.3 1.5E+02 0.005 24.2 6.4 23 427-449 13-35 (152)
291 2dl1_A Spartin; SPG20, MIT, st 27.1 1.1E+02 0.0037 23.6 5.0 50 506-582 35-84 (116)
292 4aez_C MAD3, mitotic spindle c 25.4 1.3E+02 0.0044 26.4 5.9 52 195-246 132-183 (223)
293 2ijq_A Hypothetical protein; s 24.4 3E+02 0.01 22.7 8.0 55 468-522 42-104 (161)
294 3ctd_A Putative ATPase, AAA fa 24.1 3.5E+02 0.012 23.4 9.7 21 262-282 49-69 (213)
295 3bge_A Predicted ATPase; struc 24.0 3.4E+02 0.012 23.2 8.5 38 78-115 10-50 (201)
296 1k1a_A B-cell lymphoma 3-encod 23.7 1.7E+02 0.0057 25.4 6.9 16 119-134 18-33 (241)
297 2fu4_A Ferric uptake regulatio 23.7 1.9E+02 0.0065 20.1 7.4 60 448-508 7-67 (83)
298 2keb_A DNA polymerase subunit 22.7 2.4E+02 0.0081 20.9 7.2 55 442-498 28-87 (101)
299 3kae_A CDC27, possible protein 22.5 3.4E+02 0.012 22.7 9.1 22 561-582 217-238 (242)
300 1wdy_A 2-5A-dependent ribonucl 21.7 1.1E+02 0.0037 27.5 5.3 11 79-89 9-19 (285)
301 2ijq_A Hypothetical protein; s 21.6 2.5E+02 0.0087 23.1 6.7 53 83-135 43-103 (161)
302 4aez_C MAD3, mitotic spindle c 20.9 1.2E+02 0.0042 26.5 4.9 48 475-522 131-179 (223)
303 1oai_A Nuclear RNA export fact 20.7 51 0.0017 21.8 1.9 21 192-212 35-55 (59)
304 3syn_E ATP-binding protein YLX 20.5 18 0.00063 17.6 -0.2 17 565-581 3-19 (23)
305 2zu6_B Programmed cell death p 20.5 3.5E+02 0.012 25.0 8.3 67 426-493 169-237 (307)
306 2fe3_A Peroxide operon regulat 20.4 3.3E+02 0.011 21.7 7.4 60 448-508 12-71 (145)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-40 Score=359.39 Aligned_cols=441 Identities=8% Similarity=-0.008 Sum_probs=369.6
Q ss_pred cCcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 006636 68 SCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNA 147 (637)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 147 (637)
+.+++..|+.++..|.+.|++++|+.+|+++.. ..|+..++..++.+|...|++++|..+|+++... +++..+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 155 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYL 155 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHH
Confidence 346788999999999999999999999999985 4678899999999999999999999999988653 789999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 006636 148 VINAFSESGNMEEAMDTFWKMKES---------------GLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPN 212 (637)
Q Consensus 148 ll~~~~~~g~~~~A~~~~~~m~~~---------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 212 (637)
++.+|.+.|++++|+++|+++... +.+++..+|+.++.+|.+.|++++|+++|++|.+.+ +.+
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~ 233 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKC 233 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chh
Confidence 999999999999999999953221 223358899999999999999999999999999875 334
Q ss_pred HHHHHHH--------------------------------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006636 213 LRTYNVL--------------------------------------VRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTI 254 (637)
Q Consensus 213 ~~~~~~l--------------------------------------i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 254 (637)
...+..+ +..|.+.|++++|.++|+++.+. +++..+|+.+
T Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 311 (597)
T 2xpi_A 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCK 311 (597)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHH
T ss_pred hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHH
Confidence 5554444 44556778888999999888765 5788889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006636 255 ATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDR 334 (637)
Q Consensus 255 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 334 (637)
+.+|.+.|++++|..+|+++.+.+. .+..+++.++.+|.+.|++++|..+++++.+.. +.+..+|+.++..|.+.|++
T Consensus 312 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 312 ADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccH
Confidence 9999999999999999999887654 467888889999999999999999999887654 56788888888999999999
Q ss_pred hhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006636 335 DGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTM 414 (637)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 414 (637)
++|.++|+.+.+.. +.+..+|+.++.+|.+.|++++|+.+|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++
T Consensus 390 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 390 SEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSS 467 (597)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999887754 3467888899999999999999999999888764 457888888999999999999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006636 415 IESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH----GVSPN--LKTFETLMWGYSEARQPWRAEEILQIMKAFG 488 (637)
Q Consensus 415 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 488 (637)
.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+
T Consensus 468 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 468 YALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 8764 567888999999999999999999999988765 55677 6788999999999999999999998887643
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006636 489 VHPQKSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 489 ~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
..+..+|..++.+|.+.|++++|.++++++...
T Consensus 547 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 547 -TNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp -SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 226778888999999999999998888777544
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-39 Score=351.14 Aligned_cols=459 Identities=10% Similarity=-0.010 Sum_probs=372.9
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006636 82 LIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEA 161 (637)
Q Consensus 82 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A 161 (637)
+.+.|.+..+...+..+. .+++..|+.++..+.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHH
Confidence 455667777777776653 468899999999999999999999999999864 57889999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--------------CCCCCHHHHHHHHHHHHhcC
Q 006636 162 MDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREG--------------NVKPNLRTYNVLVRAWCNEK 227 (637)
Q Consensus 162 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------------~~~~~~~~~~~li~~~~~~g 227 (637)
..+|+++... +++..+++.++.+|.+.|++++|+++|+++.... +.+++..+|+.++.+|.+.|
T Consensus 137 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 214 (597)
T 2xpi_A 137 KCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS 214 (597)
T ss_dssp HHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcC
Confidence 9999998653 5689999999999999999999999999533221 12345899999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHH--------------------------------------HHHHHHcCCHHHHHH
Q 006636 228 NITEAWNVMHKMAASGMKPDVVTYNTI--------------------------------------ATAYAQNGEADQAEE 269 (637)
Q Consensus 228 ~~~~A~~~~~~~~~~g~~~~~~~~~~l--------------------------------------i~~~~~~g~~~~A~~ 269 (637)
++++|+++|++|.+.+. .+...+..+ +..|.+.|++++|.+
T Consensus 215 ~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 215 NFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 99999999999988642 233443333 455667889999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCC
Q 006636 270 VIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRV 349 (637)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 349 (637)
+|+++.+. +++..+++.++.+|.+.|++++|+.+|+++.+.+ +.+..++..++.++.+.|+.++|..+++.+.+..
T Consensus 294 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 369 (597)
T 2xpi_A 294 YLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH- 369 (597)
T ss_dssp HHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-
Confidence 99998765 4789999999999999999999999999998765 4577889999999999999999999999998764
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006636 350 NPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTI 429 (637)
Q Consensus 350 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 429 (637)
+.+..++..++.+|.+.|++++|..+|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..+
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 447 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFL 447 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHH
Confidence 4578899999999999999999999999998753 4568899999999999999999999999999875 6688999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC--HHHHHHHHHHH
Q 006636 430 ISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAF----GVHPQ--KSTFLLLAEAR 503 (637)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~l~~~~ 503 (637)
+.+|.+.|++++|+++|+++.+... .+..+|..++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 9999999999999999999998643 37889999999999999999999999999754 67888 78999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhhccccccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhhhcccc
Q 006636 504 RATGLTKEAKRILSKIKNKERTNEMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLR 581 (637)
Q Consensus 504 ~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~a~~~~e~~~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~ 581 (637)
.+.|++++|.++++++....| ++.. ++..|+++|...|+|++|....+++.+.
T Consensus 527 ~~~g~~~~A~~~~~~~~~~~p-----------------------~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 527 RKLKMYDAAIDALNQGLLLST-----------------------NDAN--VHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHSS-----------------------CCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCC-----------------------CChH--HHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999998865533 2221 2355666666666666666655555443
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=1.1e-27 Score=244.00 Aligned_cols=382 Identities=11% Similarity=0.036 Sum_probs=221.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006636 78 LMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGN 157 (637)
Q Consensus 78 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 157 (637)
+...+.+.|++++|++.|+.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...|.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3455666777777777777766542 2345555556666666777777777776666654 5566667777777777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006636 158 MEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMH 237 (637)
Q Consensus 158 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 237 (637)
+++|+..|+++.+..+. +..+|..+..++.+.|++++|.+.|+++.+.. |.+...+..+...+...|++++|...|+
T Consensus 83 ~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 77777777776665322 44566666666667777777777776666543 3344555566666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006636 238 KMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPN 317 (637)
Q Consensus 238 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 317 (637)
++.+.. +.+..+|..+...+...|++++|...|+++.+.++ .+...+..+...+...|++++|+..|++.
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~a-------- 229 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRA-------- 229 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHH--------
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH--------
Confidence 665542 22345555555555555555555555555554322 23344444444455555555555444444
Q ss_pred HHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006636 318 LVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKG 397 (637)
Q Consensus 318 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 397 (637)
.... +.+..++..+..+|...|++++|...|+++.+.. +.+..++..++..
T Consensus 230 ---------------------------l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 280 (388)
T 1w3b_A 230 ---------------------------LSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANA 280 (388)
T ss_dssp ---------------------------HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHH
T ss_pred ---------------------------HhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4332 1234555555555555555666665555555543 2245556666666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 006636 398 YVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRA 477 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 477 (637)
|.+.|++++|...|+++.+.. +.+..+|..++..+...|++++|+..|+++.+.. +.+..++..++.++.+.|++++|
T Consensus 281 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 281 LKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666665543 4555666666666666666666666666665532 12345566666666666666666
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC
Q 006636 478 EEILQIMKAFGVHPQ-KSTFLLLAEARRATG 507 (637)
Q Consensus 478 ~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g 507 (637)
...|+++.+ +.|+ ...|..+..++...|
T Consensus 359 ~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 359 LMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence 666666654 3343 335555555555444
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.2e-27 Score=243.71 Aligned_cols=365 Identities=13% Similarity=0.016 Sum_probs=294.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 006636 149 INAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN 228 (637)
Q Consensus 149 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 228 (637)
...+.+.|++++|.+.++.+.+..+. +...+..+...+...|++++|...++...... |.+..+|..+...+.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCC
Confidence 34556677777777777777665432 45566666777777777777777777776653 5567778888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006636 229 ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFART 308 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 308 (637)
+++|+..|+++.+.. +.+..+|..+..++.+.|++++|...|+++.+..+ .+...+..+...+...|++++|...|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 888888888777653 23455677788888888888888888888776542 2455667777788888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 006636 309 MKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA 388 (637)
Q Consensus 309 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 388 (637)
+.+.. +.+..+|..+...+...|++++|...|+.+.+..+ .+...+..+...+...|++++|...+++..... +.+.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 87653 44677888888888888888888888888877653 467788899999999999999999999988764 4468
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006636 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGY 468 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 468 (637)
.++..++..|.+.|++++|...|+++.+.+ +.+..+|..++.++...|++++|+..|+++.+.. +.+..++..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 899999999999999999999999999875 5678899999999999999999999999999864 34788999999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc
Q 006636 469 SEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
...|++++|...++++.+ ..|+ ...+..++.++.+.|++++|...++++....|.
T Consensus 316 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp HTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred HHcCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999999999999999976 4454 668999999999999999999999999887663
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=2.3e-28 Score=253.44 Aligned_cols=202 Identities=16% Similarity=0.286 Sum_probs=130.0
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------hHHHH
Q 006636 128 SIMSQVEENGMDPDS-IFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGK---------PEESV 197 (637)
Q Consensus 128 ~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---------~~~A~ 197 (637)
.+.+++.+.+..+.+ .+++.+|.+|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+. +++|.
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~ 90 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGF 90 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHH
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHH
Confidence 344444444443333 34566666666666666666666666666666666666666666665543 45666
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006636 198 KLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHN 277 (637)
Q Consensus 198 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 277 (637)
++|++|...| +.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.
T Consensus 91 ~lf~~M~~~G-~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 91 DIFKQMIVDK-VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHTT-CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7777776665 667777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006636 278 GVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVE 330 (637)
Q Consensus 278 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 330 (637)
|+.||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|..
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777777777777777776666654
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=2.9e-28 Score=252.61 Aligned_cols=213 Identities=21% Similarity=0.270 Sum_probs=110.3
Q ss_pred HHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHH
Q 006636 266 QAEEVIVEMEHNGVQPNG-RTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALM 344 (637)
Q Consensus 266 ~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 344 (637)
.+..+.+++.+.+....+ .+++.+|++|++.|++++|+++|++|.+.|+.||..+|+++|.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 344455556555554332 346677777777777777777777777777777777777777777665442110
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 006636 345 KEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVV 424 (637)
Q Consensus 345 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 424 (637)
...+.++.|.++|++|...|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..
T Consensus 81 -------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ 141 (501)
T 4g26_A 81 -------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR 141 (501)
T ss_dssp -------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred -------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc
Confidence 0112234455555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006636 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARR 504 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 504 (637)
+|+++|.+|++.|++++|.++|++|.+.|+.||..||++|+.+|++.|++++|.++|++|.+.|..|+..||..+++.+.
T Consensus 142 tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 142 SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555554444
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=6.4e-24 Score=224.78 Aligned_cols=442 Identities=11% Similarity=0.012 Sum_probs=291.2
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006636 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 150 (637)
.+..|..+...+.+.|++++|+..|+++... .|++.+|..+..++...|++++|...++++++.+ +.+...+..+..
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALEL--KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 3556777889999999999999999999985 4789999999999999999999999999999876 677889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 006636 151 AFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNIT 230 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 230 (637)
+|.+.|++++|...|+++...+.. +......++..+........+.+.+..+...+.. |+...+..-...........
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 159 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATAT-PTELSTQPAKERKDKQENLP 159 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC----------------------------CCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhccCChhhHHHhhccCCc
Confidence 999999999999999999987643 4444445555444433333333333222211100 11110000000000000000
Q ss_pred HHHHHHHHHHHCCC---------CCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh-----C--CC------CCChhh
Q 006636 231 EAWNVMHKMAASGM---------KPDVVTYNTIATAYAQ---NGEADQAEEVIVEMEH-----N--GV------QPNGRT 285 (637)
Q Consensus 231 ~A~~~~~~~~~~g~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----~--~~------~~~~~~ 285 (637)
....+...+..... +.+...+..+...+.. .|++++|...|+++.+ . .. +.+..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (514)
T 2gw1_A 160 SVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239 (514)
T ss_dssp CHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred hhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHH
Confidence 01111111111100 1123444444444443 6777777777777766 2 11 123456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 006636 286 CGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWST 365 (637)
Q Consensus 286 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 365 (637)
+..+...+...|++++|+..|+++.+.. |+...+..+...+...|++++|...++.+.+..+ .+..++..+...|..
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHH
Confidence 6677777777888888888887777654 2366777777777778888888888877776542 355677777777788
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006636 366 AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEV 445 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 445 (637)
.|++++|...++.+.+.. +.+..++..++..|...|++++|..+++++.+.. +.+..+|..+...+...|++++|...
T Consensus 317 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 888888888888777654 3356677777777888888888888888777653 44567777777888888888888888
Q ss_pred HHHHHHCCCC-CC----HHHHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 006636 446 FDKMCEHGVS-PN----LKTFETLMWGYSE---ARQPWRAEEILQIMKAFGVHP-QKSTFLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 446 ~~~m~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~~~~ 516 (637)
|+++.+.... ++ ...+..+..++.. .|++++|...++++.+. .| +...+..++.++.+.|++++|...+
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8877653211 11 3367777777777 78888888888777652 33 3556777777888888888888888
Q ss_pred HHHhhhhc
Q 006636 517 SKIKNKER 524 (637)
Q Consensus 517 ~~~~~~~~ 524 (637)
+++....|
T Consensus 473 ~~a~~~~~ 480 (514)
T 2gw1_A 473 EESADLAR 480 (514)
T ss_dssp HHHHHHCS
T ss_pred HHHHHhcc
Confidence 88776655
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.1e-23 Score=220.84 Aligned_cols=435 Identities=9% Similarity=-0.008 Sum_probs=318.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006636 107 LVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKG 186 (637)
Q Consensus 107 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 186 (637)
...+......+...|++++|...|+++++.. |+...+..+..+|.+.|++++|...|+++.+.++. +..+|..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHH
Confidence 3456677788888999999999999988864 68888999999999999999999999998887543 67788889999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006636 187 YGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQ 266 (637)
Q Consensus 187 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 266 (637)
|...|++++|+..|+++...+ +++......++..+........+.+.+..+...+..|+...+..-............
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 999999999999999888765 345445555555554444444444444333222212222111111111111111111
Q ss_pred HHHHHHHHHhCCC---------CCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC--------CCCHHHH
Q 006636 267 AEEVIVEMEHNGV---------QPNGRTCGIIISGYCK---EGKIKEALRFARTMKE-----YGV--------HPNLVIF 321 (637)
Q Consensus 267 A~~~~~~~~~~~~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----~~~--------~~~~~~~ 321 (637)
...+...+..... +.+...+..+...+.. .|++++|+.+|+++.+ ... +.+..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 1111111111111 1224555555555554 8999999999999987 311 2245678
Q ss_pred HHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006636 322 NLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVRE 401 (637)
Q Consensus 322 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 401 (637)
..+...+...|++++|...++.+.+..+. ...+..+...+...|++++|...++.+.+.. +.+..++..+...|...
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHh
Confidence 88899999999999999999999887643 8889999999999999999999999998864 45788999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 006636 402 QEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEIL 481 (637)
Q Consensus 402 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 481 (637)
|++++|...++++.+.. +.+..++..+...+...|++++|+..|+++.+... .+..++..+...+...|++++|...+
T Consensus 318 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999875 56788999999999999999999999999988642 35678999999999999999999999
Q ss_pred HHHHHCCC-CCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHhhhhccc-----------cccccccchHHHHHHH
Q 006636 482 QIMKAFGV-HPQ----KSTFLLLAEARRA---TGLTKEAKRILSKIKNKERTN-----------EMEAEEDIPVESLERL 542 (637)
Q Consensus 482 ~~m~~~g~-~p~----~~~~~~l~~~~~~---~g~~~eA~~~~~~~~~~~~~~-----------~~~~~~~~a~~~~e~~ 542 (637)
+++.+... .++ ...+..++.++.. .|++++|...++++....+.. ...++.+.|...++++
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99865211 122 3488899999999 999999999999998765542 2357788999999999
Q ss_pred HhhhccCCC
Q 006636 543 YHKEATTAS 551 (637)
Q Consensus 543 ~~~~~~~~~ 551 (637)
+++.|++..
T Consensus 476 ~~~~~~~~~ 484 (514)
T 2gw1_A 476 ADLARTMEE 484 (514)
T ss_dssp HHHCSSHHH
T ss_pred HHhccccHH
Confidence 999887754
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=8.8e-23 Score=212.20 Aligned_cols=341 Identities=13% Similarity=0.090 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006636 90 EAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMK 169 (637)
Q Consensus 90 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 169 (637)
.+...|.++... .+.++..+..+...+...|++++|..+|+++++.. +.+..++..+...|...|++++|...|+++.
T Consensus 10 ~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQ-SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccccc-cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444432 13355666777777777777777777777776654 4566677777777777777777777777776
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH---HHHHHHHHH------------HHhcCCHHHHHH
Q 006636 170 ESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNL---RTYNVLVRA------------WCNEKNITEAWN 234 (637)
Q Consensus 170 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~~li~~------------~~~~g~~~~A~~ 234 (637)
+.++. +..++..+..+|...|++++|...|+++.... +.+. ..+..++.. +...|++++|+.
T Consensus 88 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 88 QLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 65433 56667777777777777777777777776643 2333 555555433 444444444444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006636 235 VMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGV 314 (637)
Q Consensus 235 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 314 (637)
.|+++.+.. +.+..++..++.+|...|++++|...|+++.+... .+..++..++.+|...|++++|+..|+++....
T Consensus 165 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 241 (450)
T 2y4t_A 165 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD- 241 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 444444332 22344444444444444444444444444443221 233444444444444444444444444444321
Q ss_pred CCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-----HH
Q 006636 315 HPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD-----AH 389 (637)
Q Consensus 315 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~ 389 (637)
+.+...+..+... . .......+...|...|++++|...|+.+.+.. |+ ..
T Consensus 242 p~~~~~~~~~~~~-~----------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~ 296 (450)
T 2y4t_A 242 QDHKRCFAHYKQV-K----------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVR 296 (450)
T ss_dssp TTCHHHHHHHHHH-H----------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHH
T ss_pred CChHHHHHHHHHH-H----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHH
Confidence 1111111111000 0 00011223667777888888888888877642 33 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006636 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLM 465 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 465 (637)
.+..++..+.+.|++++|...++++.+.. +.+..+|..++.+|...|++++|...|+++.+.... +...+..+.
T Consensus 297 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 370 (450)
T 2y4t_A 297 SKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 67777788888888888888888877653 556788888888888888888888888888774321 344555555
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.6e-22 Score=210.24 Aligned_cols=331 Identities=13% Similarity=0.083 Sum_probs=243.4
Q ss_pred ccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006636 67 ESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
..+.++..|..+...+.+.|++++|+.+|+++.+.. +.+..+|..+..++...|++++|...|+++++.+ +.+..++.
T Consensus 21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 98 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARL 98 (450)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHH
Confidence 456788899999999999999999999999998753 4578999999999999999999999999999886 66789999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHH------------HHhcCChHHHHHHHHHHHhcCCCCC
Q 006636 147 AVINAFSESGNMEEAMDTFWKMKESGLTPTT---STYNTLIKG------------YGIAGKPEESVKLLDLMSREGNVKP 211 (637)
Q Consensus 147 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~------------~~~~g~~~~A~~~~~~m~~~~~~~~ 211 (637)
.+...|.+.|++++|...|+++.+..+. +. ..+..++.. +...|++++|+..|+++.... +.
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~ 175 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--VW 175 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC
Confidence 9999999999999999999999987532 44 677777554 889999999999999999874 66
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 006636 212 NLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIIS 291 (637)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 291 (637)
+..++..++.+|.+.|++++|+..|+++.+.. +.+..+|..++.+|...|++++|...|+++..... .+...+..+..
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~ 253 (450)
T 2y4t_A 176 DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQ 253 (450)
T ss_dssp CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHH
Confidence 88999999999999999999999999998763 45789999999999999999999999999987532 23333333300
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcC
Q 006636 292 GYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPD----VITYSTIMNAWSTAG 367 (637)
Q Consensus 292 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g 367 (637)
. . ....+..+...+...|++++|...++.+.+..+. + ...+..+..++.+.|
T Consensus 254 ~--------------~---------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g 309 (450)
T 2y4t_A 254 V--------------K---------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDE 309 (450)
T ss_dssp H--------------H---------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTT
T ss_pred H--------------H---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCC
Confidence 0 0 0011222344444455555555555554443211 1 234555556666666
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006636 368 FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTII 430 (637)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 430 (637)
++++|+..++.+.+.. +.+..+|..++.+|...|++++|...|+++.+.. +.+...+..+.
T Consensus 310 ~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 370 (450)
T 2y4t_A 310 KPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLE 370 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 6666666666655542 3355666666666666666666666666666542 33444444444
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=2.7e-22 Score=213.61 Aligned_cols=434 Identities=12% Similarity=0.032 Sum_probs=329.8
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006636 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 150 (637)
....|..+...+.+.|++++|+..|+++++.. +.++.+|..+..++...|++++|...++++++.+ +.+...+..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 46678888999999999999999999999853 4588999999999999999999999999999876 678889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHh
Q 006636 151 AFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREG-----NVKPNLRTYNVLVRAWCN 225 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~~li~~~~~ 225 (637)
.+...|++++|...|+.+ ... |+ .....+..+...+...+|...++.+.... ...|+. ..+..+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~ 172 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SLN--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFG 172 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH-hcC--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHH
Confidence 999999999999999743 322 22 22333455666667788999999886531 112333 33444555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH--------HcCCHHHHHHHHHHHHhCCCCCC-------hhhHHHH
Q 006636 226 EKNITEAWNVMHKMAASGMKPDVV-TYNTIATAYA--------QNGEADQAEEVIVEMEHNGVQPN-------GRTCGII 289 (637)
Q Consensus 226 ~g~~~~A~~~~~~~~~~g~~~~~~-~~~~li~~~~--------~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~l 289 (637)
..+.+.+...+...... .+... ....+...+. ..|++++|..+++++.+.... + ..++..+
T Consensus 173 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~ 249 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYT 249 (537)
T ss_dssp TSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHH
Confidence 66666665554433321 22211 2223332222 235789999999998876432 2 2346677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCh
Q 006636 290 ISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFM 369 (637)
Q Consensus 290 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 369 (637)
...+...|++++|+..|+++.+. .|+...+..+...+...|++++|...+..+.+.. +.+..++..+...+...|++
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCH
Confidence 78888999999999999999886 4557888889999999999999999999988865 34788899999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006636 370 DKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKM 449 (637)
Q Consensus 370 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 449 (637)
++|...++++.+.. +.+..++..+...|...|++++|..+++++.+.. +.+..++..+...+...|++++|+..|+++
T Consensus 327 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 327 KNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999998864 3467889999999999999999999999998874 667789999999999999999999999998
Q ss_pred HHCCC-----CCCHHHHHHHHHHHHhc----------CChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 006636 450 CEHGV-----SPNLKTFETLMWGYSEA----------RQPWRAEEILQIMKAFGVHP-QKSTFLLLAEARRATGLTKEAK 513 (637)
Q Consensus 450 ~~~~~-----~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~ 513 (637)
.+... ......+..+..++... |++++|...|+++.+. .| +...+..++.++.+.|++++|.
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~ 482 (537)
T 3fp2_A 405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAI 482 (537)
T ss_dssp HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHH
Confidence 76421 11223345556777777 9999999999998763 34 4668889999999999999999
Q ss_pred HHHHHHhhhhcc
Q 006636 514 RILSKIKNKERT 525 (637)
Q Consensus 514 ~~~~~~~~~~~~ 525 (637)
..++++....|.
T Consensus 483 ~~~~~al~~~~~ 494 (537)
T 3fp2_A 483 ELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHhCCC
Confidence 999999877653
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=4.3e-22 Score=211.99 Aligned_cols=433 Identities=9% Similarity=0.015 Sum_probs=291.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006636 106 SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIK 185 (637)
Q Consensus 106 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 185 (637)
....+..+...+...|++++|...|+++++.. +.+...+..+..+|.+.|++++|++.|+++.+.++. +..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHH
Confidence 34667778888889999999999999988876 667888899999999999999999999998887643 6788888899
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHH
Q 006636 186 GYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASG------MKPDVVTYNTIATAYA 259 (637)
Q Consensus 186 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g------~~~~~~~~~~li~~~~ 259 (637)
+|...|++++|+..|+.+... |+ .....+..+...+...+|...++.+.... ..|+. ..+..+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~ 171 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSLN----GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFF 171 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhcC----CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHH
Confidence 999999999999998644321 22 22223445555666678888888886431 22333 3444455
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCH-------HHHHH
Q 006636 260 QNGEADQAEEVIVEMEHNGVQPNG-RTCGIIISGYCKE--------GKIKEALRFARTMKEYGVHPNL-------VIFNL 323 (637)
Q Consensus 260 ~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~-------~~~~~ 323 (637)
...+.+.+...+...... .+.. .....+...+... |++++|+.+++++.+.. +.+. .++..
T Consensus 172 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~ 248 (537)
T 3fp2_A 172 GIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCY 248 (537)
T ss_dssp HTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHH
Confidence 666766665554333221 1111 1233333333222 36788888888887653 2232 24555
Q ss_pred HHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006636 324 LIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQE 403 (637)
Q Consensus 324 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 403 (637)
+...+...|++++|...++.+.+.. |+...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|+
T Consensus 249 ~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 249 TGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCC
Confidence 6667777888888888888887754 447777778888888888888888888887754 3467788888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006636 404 PEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQI 483 (637)
Q Consensus 404 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 483 (637)
+++|...|+++.+.. +.+..+|..+...|...|++++|+..|+++.+... .+...+..+...+...|++++|...|++
T Consensus 326 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp HHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 888888888887764 45567788888888888888888888888877542 2456777888888888888888888888
Q ss_pred HHHCC-----CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhhhhccccccccccchHHHHHHHHhhhcc
Q 006636 484 MKAFG-----VHPQKSTFLLLAEARRAT----------GLTKEAKRILSKIKNKERTNEMEAEEDIPVESLERLYHKEAT 548 (637)
Q Consensus 484 m~~~g-----~~p~~~~~~~l~~~~~~~----------g~~~eA~~~~~~~~~~~~~~~~~~~~~~a~~~~e~~~~~~~~ 548 (637)
+.+.. .......+.....++.+. |++++|...++++... .|+
T Consensus 404 a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----------------------~p~ 460 (537)
T 3fp2_A 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL-----------------------DPR 460 (537)
T ss_dssp HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH-----------------------CTT
T ss_pred HHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh-----------------------CCC
Confidence 75421 111122244455666666 7777777777766544 343
Q ss_pred CCCCCCcccccccccccCCCchhhhhhhhcccccc
Q 006636 549 TASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDA 583 (637)
Q Consensus 549 ~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~~~ 583 (637)
+.. ++..|+.+|...|++++|....++..+...
T Consensus 461 ~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 461 SEQ--AKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp CHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred CHH--HHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 332 345677777777777777766665544443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=7.4e-19 Score=176.26 Aligned_cols=97 Identities=12% Similarity=0.034 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006636 107 LVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKG 186 (637)
Q Consensus 107 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 186 (637)
+..+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...|+++.+..+. +...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHH
Confidence 3444555555555555555555555555543 344555555555555555555555555555544322 44455555555
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 006636 187 YGIAGKPEESVKLLDLMSR 205 (637)
Q Consensus 187 ~~~~g~~~~A~~~~~~m~~ 205 (637)
|...|++++|...|+++..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~ 99 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLK 99 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHT
T ss_pred HHHcCChHHHHHHHHHHHh
Confidence 5555555555555555554
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=8.6e-19 Score=175.77 Aligned_cols=344 Identities=14% Similarity=0.127 Sum_probs=210.1
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006636 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 150 (637)
++..+..+...+...|++++|+..|+++.+.. +.++.++..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45677888888899999999999999888753 3467888888888999999999999999988875 557788888889
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 006636 151 AFSESGNMEEAMDTFWKMKESGLT--PTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN 228 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 228 (637)
.|...|++++|...|+++.+..+. .+...+..+...+. ...+..+...+...|+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE------------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH------------------------HHHHHHHHHHHHHccC
Confidence 999999999999999998876420 13334433321110 1112333445555556
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006636 229 ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFART 308 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 308 (637)
+++|...++++.+.. +.+...+..+..++...|++++|...++++.+... .+..++..+...|...|++++|...|++
T Consensus 136 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 136 YTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666665555442 23445555555566666666666666665554432 3445555666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 006636 309 MKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA 388 (637)
Q Consensus 309 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 388 (637)
..+.. +.+...+..+.. +. .......+...+...|++++|...++.+.+... .+.
T Consensus 214 a~~~~-~~~~~~~~~~~~-----------------~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~ 268 (359)
T 3ieg_A 214 CLKLD-QDHKRCFAHYKQ-----------------VK------KLNKLIESAEELIRDGRYTDATSKYESVMKTEP-SVA 268 (359)
T ss_dssp HHHHC-TTCHHHHHHHHH-----------------HH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SSH
T ss_pred HHhhC-ccchHHHHHHHH-----------------HH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-Cch
Confidence 55432 122222211100 00 011122234455666666666666666665431 122
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006636 389 ----HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETL 464 (637)
Q Consensus 389 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 464 (637)
..+..+...|.+.|++++|...++++.+.. +.+..+|..+...|...|++++|...|+++.+..+. +...+..+
T Consensus 269 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l 346 (359)
T 3ieg_A 269 EYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGL 346 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHH
Confidence 224445666777777777777777776653 446667777777777777777777777777764321 34455555
Q ss_pred HHHHH
Q 006636 465 MWGYS 469 (637)
Q Consensus 465 ~~~~~ 469 (637)
..+..
T Consensus 347 ~~~~~ 351 (359)
T 3ieg_A 347 EKAQR 351 (359)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=3.9e-17 Score=171.30 Aligned_cols=365 Identities=14% Similarity=0.045 Sum_probs=291.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 006636 91 AQAIFNNLIEGGHKPSLVTYTTLLAALTI----QKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE----SGNMEEAM 162 (637)
Q Consensus 91 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~ 162 (637)
++..+....+ ..++.++..+...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|.
T Consensus 26 ~~~~~~~~a~---~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAE---SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHH---CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 3455555554 3367777777777777 788899999999888754 66778888888888 88899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 006636 163 DTFWKMKESGLTPTTSTYNTLIKGYGI----AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCN----EKNITEAWN 234 (637)
Q Consensus 163 ~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~ 234 (637)
..|++..+.| +...+..|...|.. .+++++|+..|++..+.+ +...+..|...|.. .+++++|+.
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----RDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 9999888865 66778888888887 788999999999887754 67788888888887 788999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHH
Q 006636 235 VMHKMAASGMKPDVVTYNTIATAYAQ----NGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCK----EGKIKEALRFA 306 (637)
Q Consensus 235 ~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~ 306 (637)
.|++..+.| +...+..|...|.. .+++++|..+|++..+.+ +...+..+...|.. .+++++|...|
T Consensus 173 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 173 WYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999888765 67788888888887 788999999998888764 56677778888876 78899999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHH----cCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-----CChhHHHHHHH
Q 006636 307 RTMKEYGVHPNLVIFNLLIKGFVE----IMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTA-----GFMDKCKEIFD 377 (637)
Q Consensus 307 ~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~ 377 (637)
++..+.+ +...+..+...|.. .++.++|...|+...+.+ +...+..+...|... +++++|...++
T Consensus 247 ~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 247 SQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 8887753 45666667777777 788888988888887654 556777777888777 88999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 006636 378 DMGKAGIKPDAHAYSILAKGYVREQ---EPEKAEELLMTMIESGFHPNVVIFTTIISGWCS----DGSMDRAIEVFDKMC 450 (637)
Q Consensus 378 ~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~ 450 (637)
+..+.+ +...+..|...|...| ++++|.++|++..+.+ +...+..+...|.. .++.++|+..|++..
T Consensus 321 ~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~ 394 (490)
T 2xm6_A 321 KSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAA 394 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 888864 5677788888888766 7888999999988763 67888888888888 789999999999988
Q ss_pred HCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCC
Q 006636 451 EHGVSPNLKTFETLMWGYSE----ARQPWRAEEILQIMKAFGV 489 (637)
Q Consensus 451 ~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 489 (637)
+.+ +...+..|...|.. .++.++|...|++..+.+.
T Consensus 395 ~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 395 EQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred hCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 864 56778888888887 7899999999998877553
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=6e-17 Score=169.85 Aligned_cols=364 Identities=15% Similarity=0.089 Sum_probs=313.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHH
Q 006636 126 IHSIMSQVEENGMDPDSIFFNAVINAFSE----SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI----AGKPEESV 197 (637)
Q Consensus 126 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 197 (637)
+...+....+ ..+...+..|...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|+
T Consensus 26 ~~~~~~~~a~---~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAE---SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHH---CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 3455555555 3477888888888888 899999999999999874 67889999999998 89999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 006636 198 KLLDLMSREGNVKPNLRTYNVLVRAWCN----EKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQ----NGEADQAEE 269 (637)
Q Consensus 198 ~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~ 269 (637)
+.|++..+.+ +...+..|...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|..
T Consensus 100 ~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 100 IWYKKAALKG----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 9999998864 77888889999988 899999999999999876 67788889999988 889999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHhhHHHHH
Q 006636 270 VIVEMEHNGVQPNGRTCGIIISGYCK----EGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVE----IMDRDGVDEVL 341 (637)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~ 341 (637)
.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...+
T Consensus 173 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 173 WYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999998864 67888899999998 899999999999998864 56778888888886 78999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHH
Q 006636 342 ALMKEFRVNPDVITYSTIMNAWST----AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVRE-----QEPEKAEELLM 412 (637)
Q Consensus 342 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~ 412 (637)
+...+.+ +...+..+...|.. .++.++|...|+...+.+ +...+..|..+|... +++++|...|+
T Consensus 247 ~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 247 SQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 9988764 56677778888888 899999999999998764 667888899999888 99999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHH
Q 006636 413 TMIESGFHPNVVIFTTIISGWCSDG---SMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE----ARQPWRAEEILQIMK 485 (637)
Q Consensus 413 ~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~ 485 (637)
+..+.+ +...+..+...|...| +.++|++.|++..+.| +...+..|...|.. .+++++|...|++..
T Consensus 321 ~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~ 394 (490)
T 2xm6_A 321 KSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAA 394 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 999864 6678888888888867 8899999999999864 77888899999988 899999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhhh
Q 006636 486 AFGVHPQKSTFLLLAEARRA----TGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 486 ~~g~~p~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~ 523 (637)
+.| +...+..+..+|.. .++.++|..+++++....
T Consensus 395 ~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 395 EQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred hCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 865 56788889999988 899999999999987765
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=7.3e-17 Score=171.02 Aligned_cols=422 Identities=8% Similarity=0.001 Sum_probs=276.0
Q ss_pred CcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006636 69 CRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAV 148 (637)
Q Consensus 69 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (637)
+.++..|..++. +.+.|++++|+.+|+++++. .+.+...|...+..+.+.|+++.|..+|+++++. .|+...|...
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHH
Confidence 445666777776 36667777777777777764 2345666777777777777777777777777664 3466666665
Q ss_pred HHHH-HhcCCHHHHHH----HHHHHHH-CCCCC-CHHHHHHHHHHHHh---------cCChHHHHHHHHHHHhcCCCCCC
Q 006636 149 INAF-SESGNMEEAMD----TFWKMKE-SGLTP-TTSTYNTLIKGYGI---------AGKPEESVKLLDLMSREGNVKPN 212 (637)
Q Consensus 149 l~~~-~~~g~~~~A~~----~~~~m~~-~~~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~~~~ 212 (637)
+... ...|+.+.|.+ +|++... .|..| +...|...+....+ .|+++.|..+|++.... |.+
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~ 162 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMI 162 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCT
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhh
Confidence 5422 33455555443 5555443 23322 34566666665544 56666677777666652 111
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------HhCC---CCC
Q 006636 213 --LRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEM------EHNG---VQP 281 (637)
Q Consensus 213 --~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------~~~~---~~~ 281 (637)
...|..........+. .+...++. ...+++..|..++.++ .+.. ++|
T Consensus 163 ~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp THHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred hHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 1222222211100110 00001110 1234556666666552 2211 233
Q ss_pred C--------hhhHHHHHHHHHhc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------cCCHh---
Q 006636 282 N--------GRTCGIIISGYCKE----GKI----KEALRFARTMKEYGVHPNLVIFNLLIKGFVE-------IMDRD--- 335 (637)
Q Consensus 282 ~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~--- 335 (637)
+ ...|...+...... ++. +++..+|++..... +.+...|...+..+.+ .|+.+
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 3 23444444333222 222 47778888887653 5578888888888775 68876
Q ss_pred ----hHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHHcCCHHHHHH
Q 006636 336 ----GVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD-A-HAYSILAKGYVREQEPEKAEE 409 (637)
Q Consensus 336 ----~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~A~~ 409 (637)
+|..+++...+.-.+.+...|..++..+.+.|++++|..+|+++++. .|+ . .+|..++..+.+.|++++|..
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHH
Confidence 89999999886323456888999999999999999999999999986 343 3 589999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006636 410 LLMTMIESGFHPNVVIFTTIISG-WCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFG 488 (637)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 488 (637)
+|++..+.. +.+...|...+.. +...|+.++|..+|++.++... -+...|..++..+...|+.++|..+|++....+
T Consensus 378 ~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 378 IFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 999999863 3333444333322 3468999999999999987532 257889999999999999999999999998753
Q ss_pred -CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc
Q 006636 489 -VHPQ--KSTFLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 489 -~~p~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
..|+ ...|...+......|+.+.+..+..++....|
T Consensus 456 ~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 456 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp CSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 2333 44788888888999999999999999877655
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=2.5e-18 Score=170.24 Aligned_cols=283 Identities=12% Similarity=-0.039 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 006636 143 IFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRA 222 (637)
Q Consensus 143 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 222 (637)
..+..+...+...|++++|..+|+++.+..+. +...+..++..+...|++++|..+++++.... +.+...|..+...
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~ 99 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAVGCY 99 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHH
Confidence 33444444444555555555555555443322 33334444444455555555555555554432 2334444444445
Q ss_pred HHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 006636 223 WCNEK-NITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKE 301 (637)
Q Consensus 223 ~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 301 (637)
+...| ++++|...|+++.+.. +.+...|..+...+...|++++|...++++.+... .+...+..+...|...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHHH
Confidence 55555 4555555555444432 12233444444444444444444444444443321 122333334444444444444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006636 302 ALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGK 381 (637)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 381 (637)
|...++++.+.. +. +...+..+...+...|++++|...++++.+
T Consensus 178 A~~~~~~al~~~-~~-----------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 178 AERFFSQALSIA-PE-----------------------------------DPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp HHHHHHHHHTTC-TT-----------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CC-----------------------------------ChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 444444444332 22 334444444444444444444444444433
Q ss_pred CC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006636 382 AG--------IKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHG 453 (637)
Q Consensus 382 ~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 453 (637)
.. .+....++..+...|.+.|++++|...++++.+.. +.+..+|..+...|...|++++|...|+++.+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 10 12234556666666666666666666666665543 3455566666666666666666666666665532
Q ss_pred CCCCHHHHHHHHHHH
Q 006636 454 VSPNLKTFETLMWGY 468 (637)
Q Consensus 454 ~~p~~~~~~~l~~~~ 468 (637)
. .+...+..+..++
T Consensus 301 p-~~~~~~~~l~~~~ 314 (330)
T 3hym_B 301 R-DDTFSVTMLGHCI 314 (330)
T ss_dssp S-CCHHHHHHHHHHH
T ss_pred C-CchHHHHHHHHHH
Confidence 1 1444555555555
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=3.3e-18 Score=169.46 Aligned_cols=292 Identities=9% Similarity=-0.021 Sum_probs=209.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 006636 211 PNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIII 290 (637)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 290 (637)
.+...+..++..+...|++++|+.+|+++.+.. +.+...+..++.++...|++++|...++++.+... .+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHH
Confidence 344445555555555566666666666655442 22334444555556666666666666666655432 3455566666
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCh
Q 006636 291 SGYCKEG-KIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFM 369 (637)
Q Consensus 291 ~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 369 (637)
..+...| ++++|...|+++.... +.+...|..+...+...|++++|...++.+.+..+ .+...+..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhH
Confidence 6666666 6666776666666543 33455666677777777777777777777666542 2456667788899999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHH
Q 006636 370 DKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESG--------FHPNVVIFTTIISGWCSDGSMDR 441 (637)
Q Consensus 370 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~ 441 (637)
++|...++.+.+.. +.+..++..++..|...|++++|...++++.+.. .+.+..+|..+...|...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999998864 4578899999999999999999999999988641 13456799999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHH-HHcCCHH
Q 006636 442 AIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEAR-RATGLTK 510 (637)
Q Consensus 442 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~-~~~g~~~ 510 (637)
|+..|+++.+... .+...+..+..++...|++++|...|+++.+ +.|+ ...+..+..++ ...|+.+
T Consensus 255 A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999998643 3677899999999999999999999999876 5564 55777788777 4556544
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=1.7e-16 Score=168.18 Aligned_cols=390 Identities=10% Similarity=0.043 Sum_probs=261.7
Q ss_pred cCcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCChhHHHH----HHHHHHHC-CCC-C
Q 006636 68 SCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAAL-TIQKRFNSIHS----IMSQVEEN-GMD-P 140 (637)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-~~~-~ 140 (637)
.+.+...|..++..+.+.|++++|..+|++++.. .|+...|...+... ...|+.+.|.+ +|++.+.. |.. +
T Consensus 42 ~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~ 119 (530)
T 2ooe_A 42 FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIM 119 (530)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcc
Confidence 4567888999999999999999999999999975 46888888877543 45677777665 77776653 443 3
Q ss_pred CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 006636 141 DSIFFNAVINAFSE---------SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKP 211 (637)
Q Consensus 141 ~~~~~~~ll~~~~~---------~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 211 (637)
+...|...+....+ .|+++.|..+|++..+....+....|..........|. ..+..++.
T Consensus 120 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~---------- 188 (530)
T 2ooe_A 120 SYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI-HLAKKMIE---------- 188 (530)
T ss_dssp CHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH----------
T ss_pred cHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch-hHHHHHHH----------
Confidence 56788888877665 78999999999999883111112344433332111111 01111110
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH------HHCC---CCCC--------HHHHHHHHHHHHHc----CCH----HH
Q 006636 212 NLRTYNVLVRAWCNEKNITEAWNVMHKM------AASG---MKPD--------VVTYNTIATAYAQN----GEA----DQ 266 (637)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~------~~~g---~~~~--------~~~~~~li~~~~~~----g~~----~~ 266 (637)
...+++..|..++..+ .+.. ++|+ ...|...+...... ++. +.
T Consensus 189 ------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~ 256 (530)
T 2ooe_A 189 ------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKR 256 (530)
T ss_dssp ------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHH
T ss_pred ------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHH
Confidence 0123344455444442 1111 2332 23444444332221 122 36
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 006636 267 AEEVIVEMEHNGVQPNGRTCGIIISGYCK-------EGKIK-------EALRFARTMKEYGVHPNLVIFNLLIKGFVEIM 332 (637)
Q Consensus 267 A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 332 (637)
+..+|++.+... +.+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+.|
T Consensus 257 a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g 335 (530)
T 2ooe_A 257 VMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 335 (530)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence 667777776653 2456777777777765 67766 88888888875322456778888888888888
Q ss_pred CHhhHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCHHHHHHH
Q 006636 333 DRDGVDEVLALMKEFRVNPD-VITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKG-YVREQEPEKAEEL 410 (637)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~ 410 (637)
++++|..+|+.+.+..+ .+ ...|...+..+.+.|+++.|+.+|++..+.. +.+...+...+.. +...|+.++|..+
T Consensus 336 ~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~ 413 (530)
T 2ooe_A 336 KYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKI 413 (530)
T ss_dssp CHHHHHHHHHHHHHSSS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHHHHhCccc-cCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHH
Confidence 88888888888887542 23 3578888888888888999999999888753 2233444333333 3368999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006636 411 LMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGV-SPN--LKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
|++..+.. +.+...|..++..+...|+.++|..+|+++...+. .|+ ...|...+......|+.+.+..+++++.+
T Consensus 414 ~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 414 FELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99888763 55788899999999999999999999999988642 232 44777778888888999999988888765
No 21
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=8.5e-18 Score=175.67 Aligned_cols=288 Identities=15% Similarity=0.014 Sum_probs=147.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCChh
Q 006636 298 KIKEALRFARTMKEYGVHPNLVIFNLLIKG---FVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWST----AGFMD 370 (637)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 370 (637)
++++|+..|++..+.. +.++..+..+..+ +...++.++|.+.++...+..+ .+..++..+...+.. .++++
T Consensus 153 ~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~~ 230 (472)
T 4g1t_A 153 QNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHKMREEGEEEG 230 (472)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHHCC------C
T ss_pred cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHhhhhHHH
Confidence 3555555555554432 2233333333222 2233444455555555444331 233334333333322 23445
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---------------
Q 006636 371 KCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS--------------- 435 (637)
Q Consensus 371 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--------------- 435 (637)
+|...+++..... +.+..++..+...|...|++++|...++++.+.. |.+..++..+..+|..
T Consensus 231 ~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~ 308 (472)
T 4g1t_A 231 EGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYG 308 (472)
T ss_dssp HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 5555555554432 3345555555555555666666666555555542 3344444444444322
Q ss_pred ----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHH-HHHcCC
Q 006636 436 ----DGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS--TFLLLAEA-RRATGL 508 (637)
Q Consensus 436 ----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~l~~~-~~~~g~ 508 (637)
.+..++|...|++..+... .+..++..+...+...|++++|+..|++..+....|... .+..+... +...|+
T Consensus 309 ~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (472)
T 4g1t_A 309 KRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKC 387 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCC
Confidence 2335678888888776532 244567788888888999999999998887743332221 23333332 346788
Q ss_pred HHHHHHHHHHHhhhhccc-cccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhhhccccccCccc
Q 006636 509 TKEAKRILSKIKNKERTN-EMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDADSSL 587 (637)
Q Consensus 509 ~~eA~~~~~~~~~~~~~~-~~~~~~~~a~~~~e~~~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~~~~k~~ 587 (637)
.++|+..++++....+.. ...+....+...+++.++.+|+++. ++..||.+|...|++++|....++..+.+..-..
T Consensus 388 ~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~--~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 388 EDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSE--ALHVLAFLQELNEKMQQADEDSERGLESGSLIPS 465 (472)
T ss_dssp HHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTT--HHHHHHHHHHHHHHCC------------------
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence 899999988887665532 1222334445566777778888765 5788999999999999999999988888877777
Q ss_pred chhhh
Q 006636 588 ECSWF 592 (637)
Q Consensus 588 g~swi 592 (637)
..||+
T Consensus 466 a~~~~ 470 (472)
T 4g1t_A 466 ASSWN 470 (472)
T ss_dssp -----
T ss_pred HhhcC
Confidence 77776
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=1.8e-18 Score=174.28 Aligned_cols=310 Identities=10% Similarity=0.023 Sum_probs=197.0
Q ss_pred HHHhcCChHHHHH-HHHHHHhcCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 006636 186 GYGIAGKPEESVK-LLDLMSREGNVKP--NLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNG 262 (637)
Q Consensus 186 ~~~~~g~~~~A~~-~~~~m~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 262 (637)
.+...|++++|+. .|++........| +...+..+...+...|++++|...|+++.+.. +.+..++..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3445566666666 5554443221111 23445566666666666666666666666553 335556666666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHH
Q 006636 263 EADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLA 342 (637)
Q Consensus 263 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 342 (637)
++++|...|+++.+... .+..++..+...|...|++++|+..++++.... +.+...+..+... .
T Consensus 113 ~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~------- 176 (368)
T 1fch_A 113 QELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------A------- 176 (368)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------h-------
Confidence 66666666666655432 345566666666666666666666666666543 1111111111000 0
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006636 343 LMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKP-DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHP 421 (637)
Q Consensus 343 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 421 (637)
. ...+ ...+..+...+ ..|++++|...++++.+..... +..++..++..|.+.|++++|...|+++.+.. +.
T Consensus 177 ---~-~~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~ 249 (368)
T 1fch_A 177 ---G-GAGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN 249 (368)
T ss_dssp --------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred ---h-hhcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence 0 0000 01111233333 8889999999999988764221 57889999999999999999999999988764 56
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---C-------
Q 006636 422 NVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVH---P------- 491 (637)
Q Consensus 422 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~---p------- 491 (637)
+..+|..++..+...|++++|+..|+++.+... .+...+..+..+|...|++++|...|+++.+.... |
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 788999999999999999999999999987542 35778999999999999999999999988642111 1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006636 492 QKSTFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 492 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
....|..++.++...|+.++|..+.++..
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 15789999999999999999999876543
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=8.2e-18 Score=169.48 Aligned_cols=304 Identities=11% Similarity=-0.013 Sum_probs=177.2
Q ss_pred hcCCHHHHHH-HHHHHHHCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 006636 154 ESGNMEEAMD-TFWKMKESGLT---PTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNI 229 (637)
Q Consensus 154 ~~g~~~~A~~-~~~~m~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 229 (637)
..|++++|.. .|++....... .+...+..+...+...|++++|+..|+++.+.. +.+..+|..+...+...|++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCH
Confidence 3456666666 66654433211 123456667777777777777777777777653 45667777777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006636 230 TEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTM 309 (637)
Q Consensus 230 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 309 (637)
++|+..|+++.+.. +.+..++..+..++...|++++|...++++...... +...+..+... .. .
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~ 178 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------G 178 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------h
Confidence 77777777776653 335667777777777777777777777777765432 22222111000 00 0
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 006636 310 KEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNP-DVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA 388 (637)
Q Consensus 310 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 388 (637)
. .+. ..+..+...+ ..|++++|...++.+.+..+.. +..++..+...|...|++++|+..++++.+.. +.+.
T Consensus 179 ~----~~~-~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~ 251 (368)
T 1fch_A 179 A----GLG-PSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDY 251 (368)
T ss_dssp ------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred h----ccc-HHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCH
Confidence 0 000 0111111112 4455555555555555443211 45666666666667777777777777666543 3356
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----------CH
Q 006636 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSP----------NL 458 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----------~~ 458 (637)
.++..++..|.+.|++++|...|+++.+.. +.+..++..+..+|...|++++|...|+++.+..... ..
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 677777777777777777777777776653 4566677777777777777777777777776532111 15
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHH
Q 006636 459 KTFETLMWGYSEARQPWRAEEILQI 483 (637)
Q Consensus 459 ~~~~~l~~~~~~~g~~~~A~~~~~~ 483 (637)
.+|..+..++...|+.++|..++++
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHHHhCChHhHHHhHHH
Confidence 6777777777788888777777653
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=4.2e-18 Score=171.55 Aligned_cols=277 Identities=8% Similarity=-0.016 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 006636 213 LRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISG 292 (637)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 292 (637)
...|..+...+.+.|++++|+.+|+++.+.. +.+..+|..+..+|...|++++|...|+++.+... .+..++..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 3456667777777777777777777776653 33566677777777777777777777777766532 346667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhH
Q 006636 293 YCKEGKIKEALRFARTMKEYGVHPNLV-IFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDK 371 (637)
Q Consensus 293 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 371 (637)
|...|++++|+..|+++.+.. |+.. .+..+. .....+..+...+...|++++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~ 195 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLEG 195 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHHH
Confidence 777777777777777776532 2111 111000 112334455667777788888
Q ss_pred HHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006636 372 CKEIFDDMGKAGIK-PDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMC 450 (637)
Q Consensus 372 a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (637)
|+..++++.+.... .+..++..++..|.+.|++++|...|+++.+.. +.+..+|..++.+|...|++++|+..|+++.
T Consensus 196 A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 274 (365)
T 4eqf_A 196 VKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRAL 274 (365)
T ss_dssp HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888887765321 157778888888888888888888888887764 5667888888888888888888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006636 451 EHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGV---HP--------QKSTFLLLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 451 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~---~p--------~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
+... .+..++..+..+|...|++++|...|+++.+... .| +...|..+..++...|+.+.|.+...+-
T Consensus 275 ~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 275 EIQP-GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHCT-TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred hcCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 7532 2466788888888888888888888888754110 00 2457888888888889988888887765
Q ss_pred h
Q 006636 520 K 520 (637)
Q Consensus 520 ~ 520 (637)
+
T Consensus 354 l 354 (365)
T 4eqf_A 354 L 354 (365)
T ss_dssp C
T ss_pred H
Confidence 4
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=1.7e-17 Score=167.09 Aligned_cols=236 Identities=13% Similarity=0.057 Sum_probs=158.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 006636 284 RTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAW 363 (637)
Q Consensus 284 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 363 (637)
..+..+...+.+.|++++|+.+|+++.+.. +.+..+|..+...+...|++++|...|+.+.+.. +.+..++..+..+|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 334444455555555555555555554432 3344455555555555555555555555554433 22455555555556
Q ss_pred HHcCChhHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 006636 364 STAGFMDKCKEIFDDMGKAGIK---------PDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHP--NVVIFTTIISG 432 (637)
Q Consensus 364 ~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~ 432 (637)
...|++++|...++++.+.... .....+..+...|.+.|++++|..+|+++.+.. +. +..++..++..
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHH
Confidence 6666666666666655543100 113345566888999999999999999999874 33 68999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHH
Q 006636 433 WCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKE 511 (637)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~e 511 (637)
|...|++++|+..|+++.+... .+..+|..++.+|...|++++|+..|+++.+ +.|+ ...+..++.++.+.|++++
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALE--IQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998643 3678999999999999999999999999987 3455 6789999999999999999
Q ss_pred HHHHHHHHhhhhcc
Q 006636 512 AKRILSKIKNKERT 525 (637)
Q Consensus 512 A~~~~~~~~~~~~~ 525 (637)
|...++++....|.
T Consensus 300 A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 300 AVSNFLTALSLQRK 313 (365)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcc
Confidence 99999999877553
No 26
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=9.6e-15 Score=160.32 Aligned_cols=382 Identities=12% Similarity=0.108 Sum_probs=288.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006636 76 TKLMNSLIERGKPQEAQAIFNNLIEGGH--KPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFS 153 (637)
Q Consensus 76 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 153 (637)
...++.|...|.+.+|+++++++.-.+- .-+...-+.++.+..+. +.........+... .....+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHHH
Confidence 4467888899999999999999884311 12344555566666555 45555555554432 22444777888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006636 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAW 233 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 233 (637)
..|.+++|..+|++... .....+.++. ..+++++|.++.++. .+..+|..+..++.+.|++++|+
T Consensus 1061 ~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred hCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 89999999999998631 2233344433 778899999998865 35788999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006636 234 NVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYG 313 (637)
Q Consensus 234 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 313 (637)
..|.+. .|...|..++.++.+.|++++|.+.+....+.. ++....+.++.+|++.+++++...+. +
T Consensus 1126 dsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~-- 1191 (1630)
T 1xi4_A 1126 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N-- 1191 (1630)
T ss_pred HHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h--
Confidence 999664 377888899999999999999999998877654 34444556999999999988644332 2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 006636 314 VHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSI 393 (637)
Q Consensus 314 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 393 (637)
.++...|..+...|...|++++|...|... ..|..+..+|.+.|+++.|.+.+++. .+..+|..
T Consensus 1192 -~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWke 1255 (1630)
T 1xi4_A 1192 -GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKE 1255 (1630)
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHH
Confidence 456777888999999999999999999885 37899999999999999999999876 36789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--c
Q 006636 394 LAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE--A 471 (637)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~ 471 (637)
+..+|...|++..|......+ ..++..+..++..|...|.+++|+.+++..+... +-....|.-|..++++ -
T Consensus 1256 v~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCH
Confidence 999999999999998877754 3467778899999999999999999998887643 2233466666666655 4
Q ss_pred CChhHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006636 472 RQPWRAEEILQIMKAFGVHP------QKSTFLLLAEARRATGLTKEAKRILSK 518 (637)
Q Consensus 472 g~~~~A~~~~~~m~~~g~~p------~~~~~~~l~~~~~~~g~~~eA~~~~~~ 518 (637)
++..++.++|..-. .+.| +...|..++-+|.+.|+++.|...+-+
T Consensus 1330 eklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A 1330 QKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred HHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 56666777665432 2333 355799999999999999999854433
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=5.3e-16 Score=162.00 Aligned_cols=384 Identities=12% Similarity=-0.034 Sum_probs=238.1
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----C
Q 006636 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEG--------GHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEEN-----G 137 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~ 137 (637)
.+..||.|...+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...++++.+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567888888888899999999988876541 12234678888888899999999998888887652 1
Q ss_pred --CCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCChHHHHHHHHHHHhcCCCC
Q 006636 138 --MDPDSIFFNAVINAFSES--GNMEEAMDTFWKMKESGLTPTTSTYNTLIKGY---GIAGKPEESVKLLDLMSREGNVK 210 (637)
Q Consensus 138 --~~~~~~~~~~ll~~~~~~--g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~~~~ 210 (637)
......++..+..++.+. +++++|+..|++..+..+. ++..+..+..++ ...++.++|++.+++..+.. +
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~--p 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN--P 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--S
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--C
Confidence 112345666666566554 4688899999888876543 555565555443 34577788888888877764 4
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhH
Q 006636 211 PNLRTYNVLVRAWCN----EKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTC 286 (637)
Q Consensus 211 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 286 (637)
.+..++..+...+.. .+++++|.+++++..... +.+..++..+...|...|++++|...+++..+..+ .+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHH
Confidence 566677666655544 456778888888887654 44667788888888888999998888888877543 345666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 006636 287 GIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTA 366 (637)
Q Consensus 287 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 366 (637)
..+..+|...+....+... ... .......+..+.|...++...+..+ .+..++..+...|...
T Consensus 285 ~~lg~~y~~~~~~~~~~~~----------~~~------~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRE----------NGM------YGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhHHH----------HHH------HHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHh
Confidence 6666665432211110000 000 0001111224667777777766542 3455677788888888
Q ss_pred CChhHHHHHHHHHHHCCCCCCH--HHHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006636 367 GFMDKCKEIFDDMGKAGIKPDA--HAYSILAKG-YVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAI 443 (637)
Q Consensus 367 g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 443 (637)
|++++|+..|++.++....+.. ..+..+... +...|++++|+..|.+..+. .|+...+.. ....+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHH
Confidence 8888888888888876432221 123333322 34678888899888888875 444333222 223445
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006636 444 EVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFG 488 (637)
Q Consensus 444 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 488 (637)
.++++..+..+ .+..+|..+..++...|+.++|++.|++..+.+
T Consensus 417 ~~~~~~l~~~p-~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 417 KIAKMRLSKNG-ADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 56666665432 356788888888888899999999998887643
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=7.3e-18 Score=166.36 Aligned_cols=262 Identities=15% Similarity=0.177 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 006636 144 FFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAW 223 (637)
Q Consensus 144 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 223 (637)
+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..++...+. .+++.+.+.++.+|
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~---~~~~~i~~~Li~~Y 104 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CccchhHHHHHHHH
Confidence 4444444444444444444444321 23334444444444445555554433333321 12344444455555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 006636 224 CNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEAL 303 (637)
Q Consensus 224 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 303 (637)
.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+ ..|..++.++.+.|++++|.
T Consensus 105 ~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AV 168 (449)
T 1b89_A 105 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV 168 (449)
T ss_dssp ----CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHH
T ss_pred HHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHH
Confidence 55555544444442 234445555555555555555555555433 24555555555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 006636 304 RFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAG 383 (637)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 383 (637)
+.+.++ .++.+|..++.+|...|+++.|...... +...+.-...++..|.+.|.+++|+.+++......
T Consensus 169 ea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le 237 (449)
T 1b89_A 169 DGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE 237 (449)
T ss_dssp HHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST
T ss_pred HHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc
Confidence 555544 1445555555555555555555332221 11222223345555555555555555555554433
Q ss_pred CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHH
Q 006636 384 IKPDAHAYSILAKGYVRE--QEPEKAEELLMTMIESGFHP------NVVIFTTIISGWCSDGSMDRAIE 444 (637)
Q Consensus 384 ~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~ 444 (637)
+.....|+-|...|++- +++.+.++.|..-+ +++| +...|..+...|.+.++++.|..
T Consensus 238 -~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 238 -RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp -TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 33445555555555433 23333333332111 1111 23345555555556666665544
No 29
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=1e-14 Score=160.13 Aligned_cols=219 Identities=11% Similarity=0.137 Sum_probs=101.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 006636 225 NEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALR 304 (637)
Q Consensus 225 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 304 (637)
..+++++|.++.++.. +..+|..+..++...|++++|...|.+. .|...|..++.+|.+.|++++|++
T Consensus 1088 ~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHH
Confidence 3444555555544331 3444555555555555555555555332 234444445555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 006636 305 FARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGI 384 (637)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 384 (637)
++...++.. ++....+.++.+|++.+++++..... . .++...+..+...|...|++++|..+|..+
T Consensus 1156 yL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----- 1221 (1630)
T 1xi4_A 1156 YLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 1221 (1630)
T ss_pred HHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----
Confidence 555444332 22222223444455554444322221 1 123333444555555555555555555542
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006636 385 KPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETL 464 (637)
Q Consensus 385 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 464 (637)
..|..++..|.+.|++++|.+.+++. .+..+|..+..+|...|++..|......+ ..++..+..+
T Consensus 1222 ----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeel 1286 (1630)
T 1xi4_A 1222 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 1286 (1630)
T ss_pred ----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHH
Confidence 24555555555555555555555544 23455555555555555555554443321 1233444455
Q ss_pred HHHHHhcCChhHHHHHHHHH
Q 006636 465 MWGYSEARQPWRAEEILQIM 484 (637)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~m 484 (637)
+..|...|.+++|+.+++..
T Consensus 1287 i~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1287 INYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555555443
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=1.6e-16 Score=156.92 Aligned_cols=266 Identities=10% Similarity=-0.003 Sum_probs=189.6
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006636 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVI 149 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 149 (637)
.+...+..+...+...|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+.
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 355567778899999999999999999998753 4478888999999999999999999999998875 66788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHhcCCCCCCHH
Q 006636 150 NAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTL--------------IK-GYGIAGKPEESVKLLDLMSREGNVKPNLR 214 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 214 (637)
..|...|++++|...|+++.+..+. +...+..+ .. .+...|++++|...++++.... +.+..
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~ 173 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN--PNDAQ 173 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS--TTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC--CCCHH
Confidence 9999999999999999999886533 23333333 22 2556677777777777777653 44667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 006636 215 TYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYC 294 (637)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 294 (637)
.+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|+++.+... .+..++..+...|.
T Consensus 174 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~ 251 (327)
T 3cv0_A 174 LHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYS 251 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 77777777777777777777777776653 33466677777777777777777777777665432 34566666777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHHcCCHhhHHHHHH
Q 006636 295 KEGKIKEALRFARTMKEYGVHP-----------NLVIFNLLIKGFVEIMDRDGVDEVLA 342 (637)
Q Consensus 295 ~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~ll~~~~~~~~~~~a~~~~~ 342 (637)
+.|++++|...++++....... +...|..+..++...|+.++|..+++
T Consensus 252 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 252 NMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 7777777777777665442111 34455555666666666666655554
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=1.6e-16 Score=156.90 Aligned_cols=279 Identities=9% Similarity=0.035 Sum_probs=199.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 006636 214 RTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGY 293 (637)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 293 (637)
..+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+... .+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHH
Confidence 345666677777777777777777776653 33566667777777777777777777777766532 3556666777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHH-HH-HHHHcCChhH
Q 006636 294 CKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTI-MN-AWSTAGFMDK 371 (637)
Q Consensus 294 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~~ 371 (637)
...|++++|+..++++.+.. +.+...+..+... .++......+ .. .+...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHH
Confidence 77777777777777776543 1111111111100 0111111122 22 3667788999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006636 372 CKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 372 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
|...++++.+.. +.+..++..++..|.+.|++++|...++++.+.. +.+..+|..+...+...|++++|+..|+++.+
T Consensus 157 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 157 CRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999988764 4478889999999999999999999999998864 56788999999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006636 452 HGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ-------------KSTFLLLAEARRATGLTKEAKRILSK 518 (637)
Q Consensus 452 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-------------~~~~~~l~~~~~~~g~~~eA~~~~~~ 518 (637)
... .+..++..+..++...|++++|...++++.+ ..|+ ...+..+..++.+.|+.++|..++++
T Consensus 235 ~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 235 INP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY--MQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred cCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 542 3677899999999999999999999999875 2343 56888999999999999999999876
Q ss_pred Hhhh
Q 006636 519 IKNK 522 (637)
Q Consensus 519 ~~~~ 522 (637)
....
T Consensus 312 ~l~~ 315 (327)
T 3cv0_A 312 NVEP 315 (327)
T ss_dssp CSHH
T ss_pred HHHh
Confidence 6544
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=4e-16 Score=150.85 Aligned_cols=254 Identities=11% Similarity=0.076 Sum_probs=159.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 006636 223 WCNEKNITEAWNVMHKMAASGMKPDV--VTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIK 300 (637)
Q Consensus 223 ~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 300 (637)
....|++..|+..++..... .|+. .....+.++|...|+++.|+..++. . -+|+..++..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHH
Confidence 34556666666666554322 2222 2334456666666666666654433 1 2345556666666666666677
Q ss_pred HHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 006636 301 EALRFARTMKEYGV-HPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDM 379 (637)
Q Consensus 301 ~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 379 (637)
+|++.++++...+. +.+...+..+...+...|++++|.+.++. +.+...+..++..+.+.|++++|.+.++.+
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 77777776665543 33455555566666677777777766655 345666777777777777777777777777
Q ss_pred HHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006636 380 GKAGIKPDAHAY---SILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSP 456 (637)
Q Consensus 380 ~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 456 (637)
.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...|+.+..++.+.|++++|...|+++.+... -
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS-G 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C
Confidence 6653 332211 122333444577888888888877763 66777788888888888888888888888777542 2
Q ss_pred CHHHHHHHHHHHHhcCChhH-HHHHHHHHHHCCCCCCHH
Q 006636 457 NLKTFETLMWGYSEARQPWR-AEEILQIMKAFGVHPQKS 494 (637)
Q Consensus 457 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~ 494 (637)
+..++..++..+...|+.++ +.++++++.+ +.|+..
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~ 269 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHP 269 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCCh
Confidence 56677777777777887765 4577777766 556544
No 33
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=6.6e-17 Score=159.56 Aligned_cols=377 Identities=13% Similarity=0.074 Sum_probs=154.8
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006636 84 ERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMD 163 (637)
Q Consensus 84 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 163 (637)
+.|++++|.+.++++. ++.+|..++.++.+.|++++|.+.|.+ .+|...|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 4566777877777772 224777888888888888888877754 3466677777777777788888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006636 164 TFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASG 243 (637)
Q Consensus 164 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 243 (637)
+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|.+++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 66665553 3456677778888888888877776663 256667888888888888888888888765
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006636 244 MKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNL 323 (637)
Q Consensus 244 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 323 (637)
..|..|+.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.-...
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHH
Confidence 35777888888888888888888776 25677888888888888888875544432 223333445
Q ss_pred HHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc--CChhHHHHHHHHHHHCCCCC------CHHHHHHHH
Q 006636 324 LIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTA--GFMDKCKEIFDDMGKAGIKP------DAHAYSILA 395 (637)
Q Consensus 324 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~ 395 (637)
++..|.+.|.++++..+++...... +.....|+-+.-+|++- +++.+.++.|.. +.+++| +...|..++
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHH
Confidence 7777788888888888887776654 44566677666666554 233333333321 112222 355677888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC-CC-------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006636 396 KGYVREQEPEKAEELLMTMIES-GF-------------HPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTF 461 (637)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~~~~-~~-------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 461 (637)
..|...++++.|.... .+. .. ..+...|-..+.-|. +....++.-+....... .|.
T Consensus 290 ~ly~~~~e~d~A~~tm---~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~--ld~--- 359 (449)
T 1b89_A 290 FLYDKYEEYDNAIITM---MNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPR--LDH--- 359 (449)
T ss_dssp HHHHHTTCHHHHHHHH---HHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGG--CCH---
T ss_pred HHHHhhchHHHHHHHH---HhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhc--cCc---
Confidence 8888888888776532 222 00 223444444444444 12222222222222211 122
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006636 462 ETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSK 518 (637)
Q Consensus 462 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~ 518 (637)
..++..+.+.|...-+..+++..+..+ ....=.++-++|....+++.=+.-++.
T Consensus 360 ~r~v~~~~~~~~l~l~~~yl~~v~~~n---~~~vnealn~l~ieeed~~~lr~si~~ 413 (449)
T 1b89_A 360 TRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSIDA 413 (449)
T ss_dssp HHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 233444566666666666666665432 223334556666777666655544443
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=1.6e-15 Score=146.69 Aligned_cols=253 Identities=11% Similarity=0.066 Sum_probs=182.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006636 79 MNSLIERGKPQEAQAIFNNLIEGGHKPS--LVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESG 156 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 156 (637)
++.....|+++.|+..++.+... .|+ ......+.++|...|+++.|+..++. . -+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCC
Confidence 45666788999998888776542 333 23556667888888888888876644 1 2566777788888888888
Q ss_pred CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006636 157 NMEEAMDTFWKMKESGLTP-TTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNV 235 (637)
Q Consensus 157 ~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 235 (637)
+.++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888888888887765433 556677777888888888888888876 35777888888888888888888888
Q ss_pred HHHHHHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006636 236 MHKMAASGMKPDVVTY---NTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 236 ~~~~~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
|+++.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|+++...
T Consensus 153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88887763 443211 122333444577888888888887763 356777788888888888888888888887765
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhh-HHHHHHHHhhCC
Q 006636 313 GVHPNLVIFNLLIKGFVEIMDRDG-VDEVLALMKEFR 348 (637)
Q Consensus 313 ~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~ 348 (637)
. +.+..++..++..+...|+.++ +.++++++.+..
T Consensus 230 ~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 230 D-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred C-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 4 4566777777777777777755 456777776654
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=3.2e-17 Score=174.31 Aligned_cols=117 Identities=15% Similarity=0.213 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006636 389 HAYSILAKGYVREQEPEKAEELLMTMIE---SGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLM 465 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 465 (637)
.+|++||++|++.|++++|.++|.+|.+ .|+.||++|||+||.+|++.|++++|.++|++|.+.|+.||.+||++||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3445555555555555555555444332 2344455555555555555555555555555555445555555555555
Q ss_pred HHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006636 466 WGYSEARQP-WRAEEILQIMKAFGVHPQKSTFLLLAEARRA 505 (637)
Q Consensus 466 ~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 505 (637)
.++++.|+. ++|.++|++|.+.|+.||..+|++++....+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 544444442 3444455555444555555555444443333
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=170.16 Aligned_cols=151 Identities=14% Similarity=0.187 Sum_probs=123.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHH
Q 006636 141 DSIFFNAVINAFSESGNMEEAMDTFWKMKE---SGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYN 217 (637)
Q Consensus 141 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 217 (637)
-..+|++||++|++.|++++|..+|++|.+ .|+.||.++||+||++|++.|++++|.++|++|.+.| +.||.+|||
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G-~~PDvvTYn 204 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG-LTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CCCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCcHHHHH
Confidence 356899999999999999999999988764 4789999999999999999999999999999999888 899999999
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC------hhhHHHHH
Q 006636 218 VLVRAWCNEKN-ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPN------GRTCGIII 290 (637)
Q Consensus 218 ~li~~~~~~g~-~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~li 290 (637)
+||.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+.+.+ .++..+++ ..++.|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 99999999997 5789999999999999999999999987665543 33333333 2333333 44555667
Q ss_pred HHHHhcC
Q 006636 291 SGYCKEG 297 (637)
Q Consensus 291 ~~~~~~g 297 (637)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 7777655
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=4.3e-14 Score=134.14 Aligned_cols=222 Identities=11% Similarity=0.022 Sum_probs=113.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHHHH
Q 006636 251 YNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGV--HPN----LVIFNLL 324 (637)
Q Consensus 251 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~~l 324 (637)
+..+...+...|++++|...|+++.+.. .+..++..+..+|...|++++|+..++++.+... .++ ..++..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3334444444444444444444444433 3344444444444444444444444444433210 001 2344444
Q ss_pred HHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006636 325 IKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEP 404 (637)
Q Consensus 325 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 404 (637)
...+...|++++|...++.+.+.. |+. ..+...|++++|...++.+.... +.+..++..+...|...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 444444444444444444444422 221 22344455666666666655542 22345555666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006636 405 EKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIM 484 (637)
Q Consensus 405 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 484 (637)
++|...++++.+.. +.+..+|..+..+|...|++++|+..|+++.+... .+...+..+..++...|++++|...+++.
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66666666666543 44556666666666666666666666666665431 23555666666666666666666666665
Q ss_pred HH
Q 006636 485 KA 486 (637)
Q Consensus 485 ~~ 486 (637)
.+
T Consensus 234 ~~ 235 (258)
T 3uq3_A 234 RT 235 (258)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=5.1e-14 Score=133.62 Aligned_cols=225 Identities=14% Similarity=0.082 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CC----hhhHH
Q 006636 214 RTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQ--PN----GRTCG 287 (637)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~~ 287 (637)
..|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...+++..+.... ++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555555556666666666666655544 45555555666666666666666666555442211 11 35566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 006636 288 IIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAG 367 (637)
Q Consensus 288 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 367 (637)
.+...|...|++++|+..|+++.... |+. ..+...|++++|...++.+.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 66666666666666666666666542 332 23444566677777777766643 234566777777888888
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006636 368 FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFD 447 (637)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 447 (637)
++++|...++++.+.. +.+..++..+...|.+.|++++|...++++.+.. +.+..+|..+..++...|++++|...|+
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8888888888877754 4467788888888888888888888888888764 5567888888888888888888888888
Q ss_pred HHHHC
Q 006636 448 KMCEH 452 (637)
Q Consensus 448 ~m~~~ 452 (637)
++.+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88763
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=2.6e-14 Score=131.80 Aligned_cols=197 Identities=14% Similarity=0.030 Sum_probs=100.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006636 106 SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIK 185 (637)
Q Consensus 106 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 185 (637)
++..+..+...+...|++++|...|+++++.. |.+...+..+...+.+.|++++|+..|++..+..+. +...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 34444444444555555555555555544443 334444555555555555555555555555444322 3444455555
Q ss_pred HHHhc-----------CChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006636 186 GYGIA-----------GKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTI 254 (637)
Q Consensus 186 ~~~~~-----------g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 254 (637)
.+... |++++|+..|++..+.. |.+...|..+...+...|++++|+..|++..+.. .+...+..+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 55555 66666666666666543 3445566666666666666666666666666554 455566666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006636 255 ATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTM 309 (637)
Q Consensus 255 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 309 (637)
..+|...|++++|...|++..+..+ .+...+..+...+.+.|++++|+..|++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666666655432 24455556666666666666666666554
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.64 E-value=1.4e-14 Score=149.53 Aligned_cols=224 Identities=13% Similarity=0.086 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006636 249 VTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEG---KIKEALRFARTMKEYGVHPNLVIFNLLI 325 (637)
Q Consensus 249 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~ll 325 (637)
..+..|...|...+.++++......+.+.-...+...+..|..+|.+.| +.++|+..|++..+.| +++...+..+.
T Consensus 142 ~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg 220 (452)
T 3e4b_A 142 EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVA 220 (452)
T ss_dssp THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHH
Confidence 3444455555555543333332222211111123335666666666666 6666777777666665 44444445555
Q ss_pred HHHHHc----CCHhhHHHHHHHHhhCCCCCCHHHHHHHHHH-H--HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006636 326 KGFVEI----MDRDGVDEVLALMKEFRVNPDVITYSTIMNA-W--STAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGY 398 (637)
Q Consensus 326 ~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 398 (637)
..|... ++.++|...|+... . -+...+..+... + ...+++++|...|++..+.| +...+..|..+|
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y 293 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLY 293 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 555443 56677777777665 2 244455555555 3 45778888888888887765 667777777777
Q ss_pred HHcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006636 399 VREQ-----EPEKAEELLMTMIESGFHPNVVIFTTIISGWCS----DGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYS 469 (637)
Q Consensus 399 ~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 469 (637)
. .| ++++|..+|++.. +.+...+..|...|.. ..+.++|...|++..+.|. ......|...|.
T Consensus 294 ~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~ 365 (452)
T 3e4b_A 294 Y-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFS 365 (452)
T ss_dssp H-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHH
T ss_pred H-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHH
Confidence 6 44 8888888888876 3466777777777765 3488888888888887653 334445555554
Q ss_pred h----cCChhHHHHHHHHHHHCC
Q 006636 470 E----ARQPWRAEEILQIMKAFG 488 (637)
Q Consensus 470 ~----~g~~~~A~~~~~~m~~~g 488 (637)
. ..+.++|..+|+...+.|
T Consensus 366 ~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 366 QGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp SCTTBCCCHHHHHHHHHHHHTTC
T ss_pred hCCCCCCCHHHHHHHHHHHHHCC
Confidence 3 346778888888777655
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.62 E-value=5.7e-14 Score=129.54 Aligned_cols=198 Identities=14% Similarity=0.055 Sum_probs=99.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHH
Q 006636 139 DPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNV 218 (637)
Q Consensus 139 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 218 (637)
|++...+..+...+.+.|++++|...|++..+..+. +...+..+...+.+.|++++|+..|++..+.. |.+...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHH
Confidence 344555666666666666666666666666655433 55566666666666666666666666666553 344556666
Q ss_pred HHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 006636 219 LVRAWCNE-----------KNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCG 287 (637)
Q Consensus 219 li~~~~~~-----------g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 287 (637)
+...+... |++++|+..|++..+.. +.+...+..+..++...|++++|+..|++..+.. .+...+.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 66666655 55555555555555432 1234444555555555555555555555554443 3444455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHH
Q 006636 288 IIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLAL 343 (637)
Q Consensus 288 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 343 (637)
.+..+|...|++++|+..|++..+.. +.+...+..+...+...|++++|...++.
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555555555555555555554432 23344444444444444444444444443
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.62 E-value=3.7e-14 Score=146.34 Aligned_cols=342 Identities=13% Similarity=0.048 Sum_probs=239.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006636 78 LMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRF---NSIHSIMSQVEENGMDPDSIFFNAVINAFSE 154 (637)
Q Consensus 78 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 154 (637)
+...+.+.|++++|++.|++..+.| ++.++..+...+...|+. ++|...|++..+. +...+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 6778889999999999999998765 344455666667777877 8999999998853 55566677765555
Q ss_pred cC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH---HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 006636 155 SG-----NMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPE---ESVKLLDLMSREGNVKPNLRTYNVLVRAWCNE 226 (637)
Q Consensus 155 ~g-----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 226 (637)
.+ ++++|...|++..+.|.. ..+..|...|...+..+ ++.+.+......+ +...+..|...|...
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g----~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG----YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT----CTTHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC----CHHHHHHHHHHHHcC
Confidence 55 788999999999997643 36777888887766543 4555555555544 456777888888888
Q ss_pred CCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---
Q 006636 227 KNITE----AWNVMHKMAASGMKPDVVTYNTIATAYAQNG---EADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKE--- 296 (637)
Q Consensus 227 g~~~~----A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--- 296 (637)
+.+++ +..+++.... .++..+..|..+|...| +.++|+..|++..+.|. ++...+..|..+|...
T Consensus 155 ~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~ 229 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLG 229 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGS
T ss_pred CCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCC
Confidence 85544 4444444432 24448888999999999 99999999999998875 4555557788888665
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-----
Q 006636 297 -GKIKEALRFARTMKEYGVHPNLVIFNLLIKG-F--VEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAG----- 367 (637)
Q Consensus 297 -g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----- 367 (637)
+++++|+..|++.. . -+...+..+... + ...+++++|...|+...+.+ +...+..+...|. .|
T Consensus 230 ~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~ 301 (452)
T 3e4b_A 230 TPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPA 301 (452)
T ss_dssp SCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCC
T ss_pred CCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCC
Confidence 79999999999987 3 455666666666 3 46889999999999998876 6777888888887 55
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCH
Q 006636 368 FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVR----EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS----DGSM 439 (637)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 439 (637)
++++|...|++.. . -+...+..|..+|.. ..++++|..+|++..+.| +......|...|.. ..+.
T Consensus 302 d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~ 374 (452)
T 3e4b_A 302 DAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDP 374 (452)
T ss_dssp CHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCH
T ss_pred CHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCH
Confidence 9999999999887 3 477888889888877 449999999999999876 34456667776664 4588
Q ss_pred HHHHHHHHHHHHCC
Q 006636 440 DRAIEVFDKMCEHG 453 (637)
Q Consensus 440 ~~A~~~~~~m~~~~ 453 (637)
.+|...|+...+.|
T Consensus 375 ~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 375 LNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCC
Confidence 89999999888776
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.61 E-value=1.8e-13 Score=136.76 Aligned_cols=252 Identities=8% Similarity=0.031 Sum_probs=208.5
Q ss_pred CcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHH
Q 006636 69 CRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKR-FNSIHSIMSQVEENGMDPDSIFFNA 147 (637)
Q Consensus 69 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 147 (637)
+.....|..+...+.+.|++++|+..|++++... +-+..+|+.+..++...|+ +++|+..|+++++.. +.+...|..
T Consensus 94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~ 171 (382)
T 2h6f_A 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 3456778889999999999999999999999853 3478899999999999996 999999999999986 678899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh-c
Q 006636 148 VINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCN-E 226 (637)
Q Consensus 148 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~-~ 226 (637)
+..++...|++++|+..|+++.+..+. +..+|..+..++...|++++|+..|+++.+.. +.+...|+.+..++.. .
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999998755 78899999999999999999999999999875 5678999999999999 6
Q ss_pred CCHHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC--
Q 006636 227 KNITEA-----WNVMHKMAASGMKPDVVTYNTIATAYAQNG--EADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEG-- 297 (637)
Q Consensus 227 g~~~~A-----~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-- 297 (637)
|..++| +..|++.+... +-+...|+.+..++...| ++++|.+.+.++ +. .+.+...+..++.+|.+.|
T Consensus 249 ~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~ 325 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLEN 325 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcc
Confidence 665777 58888888764 336778888888888888 688999999887 33 2345678888899998874
Q ss_pred -------CHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHH
Q 006636 298 -------KIKEALRFARTM-KEYGVHPNLVIFNLLIKGFV 329 (637)
Q Consensus 298 -------~~~~A~~~~~~~-~~~~~~~~~~~~~~ll~~~~ 329 (637)
.+++|+++|+++ .+.. +.....|..+...+.
T Consensus 326 ~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 326 QCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 258999999998 6543 334556666655544
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=2.9e-13 Score=129.69 Aligned_cols=235 Identities=9% Similarity=-0.036 Sum_probs=150.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCC--CCCHHHHHHHHHHH
Q 006636 286 CGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRV--NPDVITYSTIMNAW 363 (637)
Q Consensus 286 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~ 363 (637)
+......+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+... ......+..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3344455555555555555555555442 22333455555555555555555555555554221 11233466677777
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006636 364 STAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAI 443 (637)
Q Consensus 364 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 443 (637)
...|++++|+..++...+.. +.+..++..+...|...|++++|...|++..+.. +.+...|..+...+...+++++|+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776653 3356777778888888888888888888877663 556677777773444455888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHHcCCHHHHH
Q 006636 444 EVFDKMCEHGVSPNLKTFETLMWGYSEARQ---PWRAEEILQIMKAFG-VHPQ------KSTFLLLAEARRATGLTKEAK 513 (637)
Q Consensus 444 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~~~~~l~~~~~~~g~~~eA~ 513 (637)
..|+++.+... .+...+..+..++...|+ .++|...++++.+.. -.|+ ...|..++..+...|++++|.
T Consensus 163 ~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88888877532 245677777777777777 777888887775421 1133 246777888888888888888
Q ss_pred HHHHHHhhhhc
Q 006636 514 RILSKIKNKER 524 (637)
Q Consensus 514 ~~~~~~~~~~~ 524 (637)
+.++++....|
T Consensus 242 ~~~~~al~~~p 252 (272)
T 3u4t_A 242 AAWKNILALDP 252 (272)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHhcCc
Confidence 88888776654
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.59 E-value=3.1e-12 Score=122.64 Aligned_cols=224 Identities=13% Similarity=0.038 Sum_probs=159.4
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006636 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTI----QKRFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
++.++..+...+...|++++|+..|++..+ +.++.++..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 455666677777778888888888887776 2355667777777777 777888888887777754 666777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCHHHHHH
Q 006636 147 AVINAFSE----SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI----AGKPEESVKLLDLMSREGNVKPNLRTYNV 218 (637)
Q Consensus 147 ~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 218 (637)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~ 151 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----DGDGCTI 151 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----cHHHHHH
Confidence 77777777 777777777777777764 56677777777777 777777777777777643 5566677
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 006636 219 LVRAWCN----EKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQ----NGEADQAEEVIVEMEHNGVQPNGRTCGIII 290 (637)
Q Consensus 219 li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 290 (637)
+...|.. .+++++|+..|++..+.+ +...+..+..+|.. .+++++|...|++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 7777776 777777777777777653 45666667777777 777777777777776653 245566666
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCC
Q 006636 291 SGYCK----EGKIKEALRFARTMKEYG 313 (637)
Q Consensus 291 ~~~~~----~g~~~~A~~~~~~~~~~~ 313 (637)
.+|.+ .+++++|+..|++..+.+
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77776 677777777777776554
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=6.5e-13 Score=125.64 Aligned_cols=201 Identities=12% Similarity=0.080 Sum_probs=130.8
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006636 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA 151 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 151 (637)
+..|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5667777777778888888888887777642 3356667777777777777777777777776654 4456666677777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 006636 152 FSESGNMEEAMDTFWKMKESGLTP-TTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNIT 230 (637)
Q Consensus 152 ~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 230 (637)
|...|++++|...|+++.+.+..| +...+..+...|...|++++|...|++..... +.+...+..+...+...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHH
Confidence 777777777777777766522222 34556666666666777777777776666543 344566666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006636 231 EAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHN 277 (637)
Q Consensus 231 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 277 (637)
+|...++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 193 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6666666665542 234555555666666666666666666666554
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.59 E-value=6.5e-12 Score=120.39 Aligned_cols=111 Identities=16% Similarity=0.051 Sum_probs=46.2
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC
Q 006636 366 AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVR----EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS----DG 437 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g 437 (637)
.+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+
T Consensus 127 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCC
T ss_pred ccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCc
Confidence 444444444444444332 23333344444443 444444444444444332 23334444444444 44
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHH
Q 006636 438 SMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE----ARQPWRAEEILQIMK 485 (637)
Q Consensus 438 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~ 485 (637)
++++|+..|++..+.+ +...+..+...|.. .++.++|.+.|++..
T Consensus 201 ~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~ 249 (273)
T 1ouv_A 201 NFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGC 249 (273)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 4444444444444432 13333344444444 444444444444443
No 48
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.58 E-value=1.6e-10 Score=123.23 Aligned_cols=432 Identities=8% Similarity=-0.015 Sum_probs=281.0
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHH
Q 006636 88 PQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGN---MEEAMDT 164 (637)
Q Consensus 88 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~---~~~A~~~ 164 (637)
..+.+..|++.+..+ +-|..+|..++..+...+.++.+..+|++++.. +|.....|...+..-.+.++ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 344455555555443 347778888888777777888888888887766 36667777777777777777 8888888
Q ss_pred HHHHHHCCC-CCCHHHHHHHHHHHHhcCCh--------HHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHH---------
Q 006636 165 FWKMKESGL-TPTTSTYNTLIKGYGIAGKP--------EESVKLLDLMSREGNV--KPNLRTYNVLVRAWC--------- 224 (637)
Q Consensus 165 ~~~m~~~~~-~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~~~~~--~~~~~~~~~li~~~~--------- 224 (637)
|++.....+ +|++..|...+....+.++. +...++|+.....-+. +.+...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 888776531 36777777777665555543 2334666665543222 234567777666543
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------------HcCCHHHHHHHHHHHHh--CCC----C-----
Q 006636 225 NEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYA-------------QNGEADQAEEVIVEMEH--NGV----Q----- 280 (637)
Q Consensus 225 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~-------------~~g~~~~A~~~~~~~~~--~~~----~----- 280 (637)
..++++.+..+|++++......-..+|......-. ....++.|...+.++.. .++ +
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 23346677777777774311111223321111100 11233445555544321 111 1
Q ss_pred ------C--C------hhhHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHH-
Q 006636 281 ------P--N------GRTCGIIISGYCKEG-------KIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVD- 338 (637)
Q Consensus 281 ------~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~- 338 (637)
| + ...|...+..--..+ ..+....+|++.+... +-....|...+.-+...|+.++|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 1 0 123444444332222 1234566788887653 557888888888888889988996
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC---------CC------------CHHHHHHHHHH
Q 006636 339 EVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGI---------KP------------DAHAYSILAKG 397 (637)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~l~~~ 397 (637)
.+|+...... +.+...|...+....+.|+++.|..+|+.++.... .| ...+|...+..
T Consensus 365 ~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 9999988754 45677788888888899999999999999876310 13 23468888888
Q ss_pred HHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 006636 398 YVREQEPEKAEELLMTMIES-GFHPNVVIFTTIISGWCSD-GSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPW 475 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 475 (637)
..+.|..+.|..+|.++.+. + ......|...+..-.+. ++.+.|..+|+..++. .+-+...+...+......|+.+
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHH
Confidence 88899999999999999876 2 22334444333333344 4589999999999876 3335666778888888899999
Q ss_pred HHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc
Q 006636 476 RAEEILQIMKAFGVHPQ--KSTFLLLAEARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 476 ~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
.|..+|++.......++ ...|...++.-...|..+.+..+.+++....|.
T Consensus 522 ~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 522 QVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999876433222 347888888889999999999999999888764
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.58 E-value=1.6e-12 Score=122.83 Aligned_cols=203 Identities=13% Similarity=-0.021 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006636 107 LVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKG 186 (637)
Q Consensus 107 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 186 (637)
+..+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...|+++.+..+. +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 4567778888889999999999999988875 567888888889999999999999999988876543 67788888888
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006636 187 YGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQ 266 (637)
Q Consensus 187 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 266 (637)
|...|++++|.+.|+++...+..+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999887722123456778888888889999999999998887764 3357778888888888888888
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006636 267 AEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYG 313 (637)
Q Consensus 267 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 313 (637)
|...++++.+... .+...+..+...+.+.|++++|.++++++.+..
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 8888888876543 456677778888888888888888888887653
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=6.1e-13 Score=127.42 Aligned_cols=245 Identities=13% Similarity=0.035 Sum_probs=185.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 006636 74 SMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPD--SIFFNAVINA 151 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~ 151 (637)
.+......+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.+..++ ...+..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34456778889999999999999998853 33566788888899999999999999999887431122 3457888889
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006636 152 FSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITE 231 (637)
Q Consensus 152 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 231 (637)
|...|++++|+..|++..+..+. +..+|..+...|...|++++|+..|++..... +.+...|..+...+...+++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC--CCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998886543 66788899999999999999999999887763 5567788888734444559999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCC-CCCC------hhhHHHHHHHHHhcCCHHH
Q 006636 232 AWNVMHKMAASGMKPDVVTYNTIATAYAQNGE---ADQAEEVIVEMEHNG-VQPN------GRTCGIIISGYCKEGKIKE 301 (637)
Q Consensus 232 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~g~~~~ 301 (637)
|...|+++.+.. +.+...+..+..++...|+ +++|...+++..+.. -.|+ ..++..+...|.+.|++++
T Consensus 161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999988763 3346777778888888887 777888888776531 0122 2466778888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHH
Q 006636 302 ALRFARTMKEYGVHPNLVIFNLL 324 (637)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~~l 324 (637)
|...|+++.+.. +.+...+..+
T Consensus 240 A~~~~~~al~~~-p~~~~a~~~l 261 (272)
T 3u4t_A 240 ADAAWKNILALD-PTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHhcC-ccHHHHHHHh
Confidence 888888887764 3344444443
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=2e-12 Score=119.71 Aligned_cols=200 Identities=11% Similarity=-0.049 Sum_probs=90.5
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006636 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 150 (637)
++..|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 44455555555555555555555555555431 2234445555555555555555555555554433 334444444445
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 006636 151 AFSES-GNMEEAMDTFWKMKESGLTP-TTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN 228 (637)
Q Consensus 151 ~~~~~-g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 228 (637)
.|... |++++|...|+++.+.+..| +...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCC
Confidence 55555 55555555555544411111 13344444444444444444444444444432 2234444444444444444
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006636 229 ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEM 274 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 274 (637)
+++|...++++.+.....+...+..+...+...|+.+.|...++.+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4444444444443321023333333334444444444444444443
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=2.4e-12 Score=119.14 Aligned_cols=204 Identities=8% Similarity=-0.017 Sum_probs=178.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006636 106 SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIK 185 (637)
Q Consensus 106 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 185 (637)
++.++..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...|+++.+..+. +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 56788889999999999999999999999875 667889999999999999999999999999887543 7889999999
Q ss_pred HHHhc-CChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006636 186 GYGIA-GKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEA 264 (637)
Q Consensus 186 ~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 264 (637)
.|... |++++|...++++...+..+.+...+..+...+...|++++|+..++++.+.. +.+...+..+..++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 99999 99999999999998832233447889999999999999999999999998764 34688899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006636 265 DQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 265 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
++|...++++.+.....+...+..+...+...|+.++|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999999887643246677888888899999999999999998765
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.57 E-value=1.2e-12 Score=130.94 Aligned_cols=227 Identities=11% Similarity=0.014 Sum_probs=102.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006636 180 YNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN-ITEAWNVMHKMAASGMKPDVVTYNTIATAY 258 (637)
Q Consensus 180 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 258 (637)
|..+...+...|++++|+..|++..... |.+..+|+.+...+...|+ +++|+..|+++++.. +-+...|+.+..++
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 3444444444444444444444444432 2334444444444444443 444444444444432 12344444444444
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHhhH
Q 006636 259 AQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVE-IMDRDGV 337 (637)
Q Consensus 259 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a 337 (637)
...|++++|+..|+++++... .+..+|..+..++.+.|++++|+..|+++++.. +.+...|+.+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHH
Confidence 444445555544444444322 234444444444444555555555555544432 2334444444444444 2322333
Q ss_pred -----HHHHHHHhhCCCCCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--------
Q 006636 338 -----DEVLALMKEFRVNPDVITYSTIMNAWSTAG--FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQ-------- 402 (637)
Q Consensus 338 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------- 402 (637)
...++..+... +.+...|..+...+...| ++++|+..+..+ +. .+.+...+..++..|.+.|
T Consensus 255 ~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchH
Confidence 23444444332 123444444444444444 345555555554 22 1334455555555555442
Q ss_pred -CHHHHHHHHHHH
Q 006636 403 -EPEKAEELLMTM 414 (637)
Q Consensus 403 -~~~~A~~~~~~~ 414 (637)
..++|.++++++
T Consensus 332 ~~~~~A~~~~~~l 344 (382)
T 2h6f_A 332 DILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 135555555555
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.57 E-value=1.1e-13 Score=132.82 Aligned_cols=222 Identities=12% Similarity=-0.012 Sum_probs=152.1
Q ss_pred HcCChhHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006636 84 ERGKPQEAQAIFNNLIEGGHK---PSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEE 160 (637)
Q Consensus 84 ~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 160 (637)
..|++++|+..|+++.+.... .+..++..+..++...|++++|...|+++.+.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 347788899999988875321 145677778888888888888888888888765 5567888888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006636 161 AMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMA 240 (637)
Q Consensus 161 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 240 (637)
|...|++..+..+. +..++..+...|...|++++|...|+++.... |+.......+..+...|++++|...+++..
T Consensus 96 A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 88888888776433 56778888888888888888888888887753 333333444444556677777777776666
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006636 241 ASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQP---NGRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 241 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
... +++...+. ++..+...++.++|...+.+........ +..++..+...|.+.|++++|...|+++...
T Consensus 172 ~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 172 EKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 542 23333333 5566666677777777776665432110 1355666666666777777777777766654
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.57 E-value=2.8e-13 Score=127.30 Aligned_cols=202 Identities=14% Similarity=0.131 Sum_probs=134.6
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006636 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVI 149 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 149 (637)
.....|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 345567777888888888888888888888742 3467778888888888888888888888887764 55677777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 006636 150 NAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNI 229 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 229 (637)
..|...|++++|...|+++.+.... +...+..+...+...|++++|...++++.... +.+...+..+...+...|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCH
Confidence 8888888888888888887776432 56677777777888888888888888777653 45667777777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006636 230 TEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHN 277 (637)
Q Consensus 230 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 277 (637)
++|...++++.+.. +.+..++..+..+|...|++++|...++++.+.
T Consensus 176 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 176 DEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 77777777776653 334666777777777777777777777777664
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=3.6e-13 Score=126.51 Aligned_cols=201 Identities=13% Similarity=0.101 Sum_probs=130.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006636 106 SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIK 185 (637)
Q Consensus 106 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 185 (637)
.+.+|..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|...|+++.+..+. +..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHH
Confidence 44566667777777788888888888877654 556777777777888888888888888877765432 5677777777
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 006636 186 GYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEAD 265 (637)
Q Consensus 186 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 265 (637)
.|...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 7778888888888887777654 4566777777777777788888877777776653 335666777777777777777
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006636 266 QAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 266 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
+|...++++.+... .+..++..+..+|.+.|++++|...++++.+.
T Consensus 177 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 77777777766532 34566677777777777777777777777654
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.56 E-value=2e-13 Score=131.00 Aligned_cols=222 Identities=14% Similarity=-0.047 Sum_probs=105.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 006636 285 TCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWS 364 (637)
Q Consensus 285 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 364 (637)
++..+...|...|++++|+..|+++.+.. +.+...|..+...+...|++++|...++.+.+..+ .+...+..+...|.
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~ 122 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALY 122 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCc-cccHHHHHHHHHHH
Confidence 34444444444444444444444444332 22344444444444444444444444444444321 23445555555555
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006636 365 TAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIE 444 (637)
Q Consensus 365 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 444 (637)
..|++++|...++.+.+.. |+.......+..+...|++++|...+++..... +++...+. ++..+...++.++|+.
T Consensus 123 ~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~ 198 (275)
T 1xnf_A 123 YGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLME 198 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHH
Confidence 5555555555555555432 222222233333344566666666665555432 33333332 4444555556666666
Q ss_pred HHHHHHHCCCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006636 445 VFDKMCEHGVS--P-NLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 445 ~~~~m~~~~~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~ 516 (637)
.++++.+.... | +...+..+...+...|++++|...|+++.+ ..|+. +.....++...|++++|.+.+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 199 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 66655442110 0 134566666666666666666666666655 23422 122233445556666655543
No 58
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.54 E-value=1.7e-10 Score=122.96 Aligned_cols=426 Identities=9% Similarity=0.050 Sum_probs=300.7
Q ss_pred ccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCC-CCCCH
Q 006636 67 ESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKR---FNSIHSIMSQVEENG-MDPDS 142 (637)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~ 142 (637)
..+.+...|..++..+.+.+.++.++.+|+++... .+.....|..-+..-.+.++ ++.+..+|++.+... .+|++
T Consensus 61 ~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv 139 (679)
T 4e6h_A 61 EQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDL 139 (679)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCH
T ss_pred HCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCH
Confidence 34578999999999999999999999999999985 45578889988888888888 999999999998763 13899
Q ss_pred HHHHHHHHHHHhcCCH--------HHHHHHHHHHHH-CCC-CC-CHHHHHHHHHHHH---------hcCChHHHHHHHHH
Q 006636 143 IFFNAVINAFSESGNM--------EEAMDTFWKMKE-SGL-TP-TTSTYNTLIKGYG---------IAGKPEESVKLLDL 202 (637)
Q Consensus 143 ~~~~~ll~~~~~~g~~--------~~A~~~~~~m~~-~~~-~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~ 202 (637)
..|...+....+.++. +...++|+.... .|. .+ +...|...+.... ..++++.+..+|++
T Consensus 140 ~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~r 219 (679)
T 4e6h_A 140 SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKT 219 (679)
T ss_dssp HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHH
Confidence 9999888776665543 334578887654 455 44 4578888887654 24457889999999
Q ss_pred HHhcCCCCCC--HHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHH--CCCC---------------C----
Q 006636 203 MSREGNVKPN--LRTYNVLVRAWCN-------------EKNITEAWNVMHKMAA--SGMK---------------P---- 246 (637)
Q Consensus 203 m~~~~~~~~~--~~~~~~li~~~~~-------------~g~~~~A~~~~~~~~~--~g~~---------------~---- 246 (637)
.... |.. ..+|......-.. ..+++.|...+.++.. .++. |
T Consensus 220 aL~i---P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~ 296 (679)
T 4e6h_A 220 LLCQ---PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNE 296 (679)
T ss_dssp HTTS---CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTC
T ss_pred HHhC---ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCch
Confidence 9853 322 2344322221111 1233445555554322 1111 1
Q ss_pred -C---HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH-HHHHHHHHCCC
Q 006636 247 -D---VVTYNTIATAYAQNG-------EADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEAL-RFARTMKEYGV 314 (637)
Q Consensus 247 -~---~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~ 314 (637)
+ ...|...+..--..+ ..+.+..+|++.+... +.+...|...+..+...|+.++|. .+|++.....
T Consensus 297 ~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~- 374 (679)
T 4e6h_A 297 YDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI- 374 (679)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-
Confidence 0 134555444322222 1234567788887653 347788888899889999999997 9999998753
Q ss_pred CCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCC---------CC------------CHHHHHHHHHHHHHcCChhHHH
Q 006636 315 HPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRV---------NP------------DVITYSTIMNAWSTAGFMDKCK 373 (637)
Q Consensus 315 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~l~~~~~~~g~~~~a~ 373 (637)
+.+...|...+......|+.+.|.++|+.+..... .| ...+|...+....+.|..+.|.
T Consensus 375 P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR 454 (679)
T 4e6h_A 375 PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASR 454 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHH
Confidence 56777788888888999999999999998875310 12 1346777888888899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006636 374 EIFDDMGKAGIKPDAHAYSILAKGYVREQ-EPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (637)
.+|....+.-......+|...+..-.+.+ +.+.|.++|+...+. ++.+...|...+......|+.+.|..+|++....
T Consensus 455 ~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 455 KIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 99999987611223445554444444554 599999999999886 4667888889999888999999999999999886
Q ss_pred CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006636 453 GVSP--NLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAE 501 (637)
Q Consensus 453 ~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 501 (637)
...+ ....|...+..-...|..+.+..+.+++.+ ..|+......+++
T Consensus 534 ~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~--~~P~~~~~~~f~~ 582 (679)
T 4e6h_A 534 ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE--KFPEVNKLEEFTN 582 (679)
T ss_dssp SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH--HSTTCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCcHHHHHHH
Confidence 4322 234788888888899999999999999976 3455443433433
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.51 E-value=6.7e-13 Score=135.18 Aligned_cols=156 Identities=15% Similarity=0.057 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----H
Q 006636 354 ITYSTIMNAWSTAGFMDKCKEIFDDMGKAGI-KPD----AHAYSILAKGYVREQEPEKAEELLMTMIESGF-HPN----V 423 (637)
Q Consensus 354 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~ 423 (637)
.++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|...+++..+... .++ .
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 3455666666777777777777766553210 011 23566677777777777777777777654210 011 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-H
Q 006636 424 VIFTTIISGWCSDGSMDRAIEVFDKMCEHGV-SPN----LKTFETLMWGYSEARQPWRAEEILQIMKA----FGVHPQ-K 493 (637)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~ 493 (637)
.++..+...|...|++++|...|+++.+... .++ ..++..+...|...|++++|...+++..+ .+..+. .
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 347 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 4666777777777777777777777654210 011 34566677777777777777777776542 221211 2
Q ss_pred HHHHHHHHHHHHcCCH
Q 006636 494 STFLLLAEARRATGLT 509 (637)
Q Consensus 494 ~~~~~l~~~~~~~g~~ 509 (637)
.++..+..++...|+.
T Consensus 348 ~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 348 TARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHh
Confidence 2455555666555544
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.49 E-value=7e-13 Score=135.50 Aligned_cols=279 Identities=14% Similarity=0.082 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----C-CCCChh
Q 006636 214 RTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDV----VTYNTIATAYAQNGEADQAEEVIVEMEHN----G-VQPNGR 284 (637)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~ 284 (637)
..+..+...+...|++++|+..|+++.+.+. .+. ..+..+...|...|++++|...+++..+. + .+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 3445566667777777777777777776532 122 35666777777777777777777766442 1 111234
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 006636 285 TCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWS 364 (637)
Q Consensus 285 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 364 (637)
++..+...|...|++++|+..+++..... ...+ ..+....++..+...|.
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------~~~~---------------~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLA---------------RQLG---------------DRLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHHT---------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------------HHhh---------------chHHHHHHHHHHHHHHH
Confidence 55666666666777777776666654320 0000 00011234444555555
Q ss_pred HcCC-----------------hhHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CC
Q 006636 365 TAGF-----------------MDKCKEIFDDMGKA----GI-KPDAHAYSILAKGYVREQEPEKAEELLMTMIESGF-HP 421 (637)
Q Consensus 365 ~~g~-----------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~ 421 (637)
..|+ +++|...+++..+. +. .....++..+...|...|++++|...+++..+... .+
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 5555 56666665554331 10 11235677788888899999999999988765310 11
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----C
Q 006636 422 N----VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVS-PN----LKTFETLMWGYSEARQPWRAEEILQIMKAF----G 488 (637)
Q Consensus 422 ~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g 488 (637)
+ ..++..+...|...|++++|+..|+++.+.... .+ ..++..+...+...|++++|..++++..+. +
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 2 237788888999999999999999988753110 11 457888899999999999999999987541 1
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh
Q 006636 489 VHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 489 ~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 523 (637)
..+. ...+..+..++...|++++|..+++++....
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 1111 3477889999999999999999999987553
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.49 E-value=1.3e-12 Score=133.07 Aligned_cols=85 Identities=12% Similarity=0.009 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHH
Q 006636 355 TYSTIMNAWSTAGFMDKCKEIFDDMGKAGI-KPD----AHAYSILAKGYVREQEPEKAEELLMTMIES----GF-HPNVV 424 (637)
Q Consensus 355 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~ 424 (637)
++..+...|...|++++|...++...+... ..+ ..++..+...|.+.|++++|...+++..+. +. +....
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 348 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELT 348 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhH
Confidence 344455555555555555555555443100 001 345556666666666666666666665432 11 11234
Q ss_pred HHHHHHHHHHhcCCH
Q 006636 425 IFTTIISGWCSDGSM 439 (637)
Q Consensus 425 ~~~~li~~~~~~g~~ 439 (637)
++..+...+...|+.
T Consensus 349 ~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 349 ARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHh
Confidence 555566666666654
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.47 E-value=5.6e-11 Score=116.02 Aligned_cols=222 Identities=9% Similarity=-0.006 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------cCCH-------hhHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 006636 300 KEALRFARTMKEYGVHPNLVIFNLLIKGFVE-------IMDR-------DGVDEVLALMKEFRVNPDVITYSTIMNAWST 365 (637)
Q Consensus 300 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 365 (637)
++|..+|++++... +.+...|..++..+.. .|+. ++|..+|+...+.-.+.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777776643 5566677777766653 4775 7888888888873123466788888888899
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHH
Q 006636 366 AGFMDKCKEIFDDMGKAGIKPDAH-AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWC-SDGSMDRAI 443 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~ 443 (637)
.|++++|..+|+++++.. +.+.. +|..++..+.+.|++++|..+|++..+.. +++...|...+.... ..|+.++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999988753 22343 88889999999999999999999998864 455556654444322 369999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006636 444 EVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFG-VHP--QKSTFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 444 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
.+|+++++... -+...|..++..+...|+.++|..+|++..... +.| ....|..++..+.+.|+.++|..+++++.
T Consensus 190 ~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999987532 267788888999999999999999999998752 455 35678888888999999999999999988
Q ss_pred hhhcc
Q 006636 521 NKERT 525 (637)
Q Consensus 521 ~~~~~ 525 (637)
...|.
T Consensus 269 ~~~p~ 273 (308)
T 2ond_A 269 TAFRE 273 (308)
T ss_dssp HHTTT
T ss_pred HHccc
Confidence 77663
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.46 E-value=1.7e-12 Score=132.57 Aligned_cols=278 Identities=13% Similarity=0.044 Sum_probs=195.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCC
Q 006636 177 TSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNL----RTYNVLVRAWCNEKNITEAWNVMHKMAAS----GM-KPD 247 (637)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~-~~~ 247 (637)
...+..+...+...|++++|+..|+++.+.. +.+. ..|..+...|...|++++|+..+++..+. +. ...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 4455667788999999999999999999874 3343 57888999999999999999999988753 11 223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCChhhHHHHHHHHHhcCC-----------------HHHHHHH
Q 006636 248 VVTYNTIATAYAQNGEADQAEEVIVEMEHNG-----VQPNGRTCGIIISGYCKEGK-----------------IKEALRF 305 (637)
Q Consensus 248 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~ 305 (637)
...+..+...|...|++++|...+++..... ......++..+...|...|+ +++|+..
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 5678889999999999999999999876531 11224466777778888888 6666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 006636 306 ARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIK 385 (637)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 385 (637)
+.+..+. ..... .......++..+...|...|++++|...+++..+....
T Consensus 206 ~~~al~~----------------------------~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 206 YQENLKL----------------------------MRDLG--DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHHH----------------------------HHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----------------------------HHHcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 5554321 11110 00112235566666777777777777777766542100
Q ss_pred -CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-C----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 006636 386 -PD----AHAYSILAKGYVREQEPEKAEELLMTMIESGF-H----PNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH--- 452 (637)
Q Consensus 386 -~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 452 (637)
.+ ..++..+...|...|++++|...+++..+... . ....++..+...|...|++++|...|++..+.
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 11 23677788888889999999998888765310 0 11467788888899999999999999888753
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006636 453 -GVSP-NLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 453 -~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
+..+ ...++..+..+|...|++++|..++++..+
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1111 134677888899999999999999988765
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.45 E-value=6.3e-11 Score=115.62 Aligned_cols=236 Identities=8% Similarity=0.010 Sum_probs=142.6
Q ss_pred chhHHHHHHHHHHHc----CCh----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCh-------hHHHH
Q 006636 71 TVRSMTKLMNSLIER----GKP----QEAQAIFNNLIEGGHKPSLVTYTTLLAALTI-------QKRF-------NSIHS 128 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~-------~~a~~ 128 (637)
+...|...+..-.+. ++. ++|+.+|++++... +.++..|..++..+.. .|++ ++|..
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 345566666554333 122 56777787777642 3466777777666643 4664 67777
Q ss_pred HHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 006636 129 IMSQVEE-NGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTS-TYNTLIKGYGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 129 ~~~~~~~-~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (637)
+|++.++ .. +.+...|..++..+.+.|++++|..+|++..+..+. +.. +|..++..+.+.|++++|+.+|++..+.
T Consensus 86 ~~~rAl~~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 86 IYERAISTLL-KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HHHHHHTTTT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 7777776 23 445566777777777777777777777777764322 233 6777777777777777777777777664
Q ss_pred CCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCC--C
Q 006636 207 GNVKPNLRTYNVLVRAWC-NEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNG-VQP--N 282 (637)
Q Consensus 207 ~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~--~ 282 (637)
. +++...|...+.... ..|++++|..+|++..+.. +.+...|..++..+.+.|++++|..+|++..... ++| .
T Consensus 164 ~--p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~ 240 (308)
T 2ond_A 164 A--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 240 (308)
T ss_dssp T--TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC
T ss_pred C--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHH
Confidence 3 334444443333322 2567777777776666542 2345666666666666667777777776666642 232 2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006636 283 GRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 283 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
...|..++..+.+.|+.++|..+++++.+.
T Consensus 241 ~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 241 GEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445666666666666666666666666544
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.45 E-value=2.3e-11 Score=108.75 Aligned_cols=24 Identities=17% Similarity=0.081 Sum_probs=8.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 006636 286 CGIIISGYCKEGKIKEALRFARTM 309 (637)
Q Consensus 286 ~~~li~~~~~~g~~~~A~~~~~~~ 309 (637)
|..+...|.+.|++++|+..|++.
T Consensus 8 y~~lG~~~~~~g~~~~A~~~~~~a 31 (184)
T 3vtx_A 8 YMDIGDKKRTKGDFDGAIRAYKKV 31 (184)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333333333333333333333
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.44 E-value=2.3e-11 Score=108.72 Aligned_cols=166 Identities=16% Similarity=0.111 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006636 317 NLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAK 396 (637)
Q Consensus 317 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 396 (637)
+..+|..+...|...|++++|.+.|++..+..+ .+..++..+..+|.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 344555555555555666666555555555432 245555555555555566666655555555432 234455555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 006636 397 GYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWR 476 (637)
Q Consensus 397 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 476 (637)
.+...++++.|...+.+..+.. +.+...+..+...|...|++++|++.|++..+..+ .+..++..+..++...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence 5555566666666555555542 44455555555556666666666666665555432 144455555555666666666
Q ss_pred HHHHHHHHHH
Q 006636 477 AEEILQIMKA 486 (637)
Q Consensus 477 A~~~~~~m~~ 486 (637)
|++.|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666655554
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.44 E-value=2.1e-12 Score=127.50 Aligned_cols=277 Identities=13% Similarity=0.066 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CChh
Q 006636 214 RTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPD----VVTYNTIATAYAQNGEADQAEEVIVEMEHN----GVQ-PNGR 284 (637)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~ 284 (637)
..+......+...|++++|...|+++.+... .+ ...+..+...+...|++++|...+++.... +.. ....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 3445555666777777777777777766531 12 245566666777777777777777665432 111 1134
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 006636 285 TCGIIISGYCKEGKIKEALRFARTMKEYGV-HPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAW 363 (637)
Q Consensus 285 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 363 (637)
++..+...|...|++++|...+.+..+... .++.. ....++..+...|
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~ 133 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVY 133 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHH
Confidence 455556666666666666666665543200 00100 0022344444455
Q ss_pred HHcCC--------------------hhHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006636 364 STAGF--------------------MDKCKEIFDDMGKA----G-IKPDAHAYSILAKGYVREQEPEKAEELLMTMIESG 418 (637)
Q Consensus 364 ~~~g~--------------------~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 418 (637)
...|+ +++|...+++.... + ......++..+...|...|++++|...+++..+..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 213 (338)
T 3ro2_A 134 HAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 213 (338)
T ss_dssp HHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 55555 55555555554321 1 01124467778888888899999988888876421
Q ss_pred C-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-
Q 006636 419 F-HPN----VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGV-SPN----LKTFETLMWGYSEARQPWRAEEILQIMKAF- 487 (637)
Q Consensus 419 ~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~- 487 (637)
. .++ ..++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 214 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 0 111 23778888889999999999999988875311 012 456778888999999999999999887531
Q ss_pred ---CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006636 488 ---GVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 488 ---g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
+..+. ...+..+..++.+.|++++|...++++...
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 294 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 11111 336778889999999999999999988654
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.44 E-value=6.9e-12 Score=123.78 Aligned_cols=63 Identities=11% Similarity=0.048 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006636 355 TYSTIMNAWSTAGFMDKCKEIFDDMGKAG-----IKPDAHAYSILAKGYVREQEPEKAEELLMTMIES 417 (637)
Q Consensus 355 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 417 (637)
++..+...|...|++++|...+++..... ......++..+...|.+.|++++|...+++..+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 34445555555556665555555543310 0011335556666666777777777777666653
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.42 E-value=1.8e-12 Score=126.70 Aligned_cols=245 Identities=12% Similarity=0.075 Sum_probs=156.1
Q ss_pred cccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--
Q 006636 66 KESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEG-------GHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEEN-- 136 (637)
Q Consensus 66 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-- 136 (637)
...+.+..++..+...+...|++++|+..|+++.+. ..+....++..+...+...|++++|...++++++.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 345567888999999999999999999999998862 22335567888889999999999999999988764
Q ss_pred ----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006636 137 ----GM-DPDSIFFNAVINAFSESGNMEEAMDTFWKMKES------GL-TPTTSTYNTLIKGYGIAGKPEESVKLLDLMS 204 (637)
Q Consensus 137 ----~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 204 (637)
+- +....++..+...|...|++++|...|++..+. +. +....++..+...|...|++++|++.|++..
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 21 223567788888888999999999998887754 11 1234567778888888888888888888876
Q ss_pred hc------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCCH-------HHHHHHHHHHHHcCCH
Q 006636 205 RE------GNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASG-------MKPDV-------VTYNTIATAYAQNGEA 264 (637)
Q Consensus 205 ~~------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-------~~~~~-------~~~~~li~~~~~~g~~ 264 (637)
.. +..+....++..+...|...|++++|...++++.+.. ..+.. ..+..+...+...+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHH
Confidence 64 1112234567778888888888888888888876521 11111 1111122222333344
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006636 265 DQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 265 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
.++...+....... +.+..++..+..+|.+.|++++|...|++..+
T Consensus 261 ~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 261 GEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444444443321 12344555666666666666666666665543
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.41 E-value=2.6e-11 Score=122.47 Aligned_cols=233 Identities=8% Similarity=-0.019 Sum_probs=124.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C-----ChhhHH
Q 006636 219 LVRAWCNEKNITEAWNVMHKMAAS----GMKP-DVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQ-P-----NGRTCG 287 (637)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~-----~~~~~~ 287 (637)
....+...|++++|+..|++..+. +-.+ ...++..+...|...|+++.|...+.+..+.... + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445556667777777777666542 1011 1245556666666666666666666665432100 0 123455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHc
Q 006636 288 IIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRV-NPDVITYSTIMNAWSTA 366 (637)
Q Consensus 288 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 366 (637)
.+...|...|++++|+..|.+..+.. .+.+- .....++..+...|...
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMA-------------------------------EAEKQPQLMGRTLYNIGLCKNSQ 237 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHH-------------------------------HHcCChHHHHHHHHHHHHHHHHC
Confidence 55566666666666666665554210 00000 00112445555566666
Q ss_pred CChhHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcC
Q 006636 367 GFMDKCKEIFDDMGK-----AGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIES----GFHPNVVIFTTIISGWCSDG 437 (637)
Q Consensus 367 g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g 437 (637)
|++++|+..+++..+ ...+....++..+...|.+.|++++|...+++..+. +.+.....+..+...|...|
T Consensus 238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP 317 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 666666666666554 211223455666666666667776666666665432 11111223455666666666
Q ss_pred C---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006636 438 S---MDRAIEVFDKMCEHGVSPN-LKTFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 438 ~---~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
+ +++|+.++++. +..|+ ...+..+...|...|++++|..++++..
T Consensus 318 ~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 318 DEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6 66666666554 22222 2355666777777777777777777664
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.40 E-value=2.7e-11 Score=122.45 Aligned_cols=231 Identities=10% Similarity=-0.032 Sum_probs=162.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCC------CCCHHHHH
Q 006636 289 IISGYCKEGKIKEALRFARTMKEY----GVHP-NLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRV------NPDVITYS 357 (637)
Q Consensus 289 li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 357 (637)
....+...|++++|+..|++..+. +-.+ ...++..+...|...|+++.|...+....+... .....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445556666777777766666542 1011 234566666667777777777766666543210 01235677
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 006636 358 TIMNAWSTAGFMDKCKEIFDDMGKAGIK-PD----AHAYSILAKGYVREQEPEKAEELLMTMIES----GF-HPNVVIFT 427 (637)
Q Consensus 358 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~ 427 (637)
.+...|...|++++|...+.+..+.... ++ ..++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888899999999999999887653110 11 357888999999999999999999998872 22 34467889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC--C-CCC-HHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCC-HHHHHHH
Q 006636 428 TIISGWCSDGSMDRAIEVFDKMCEHG--V-SPN-LKTFETLMWGYSEARQ---PWRAEEILQIMKAFGVHPQ-KSTFLLL 499 (637)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~~~--~-~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~l 499 (637)
.+...|...|++++|...+++..+.. . .|. ...+..+...+...|+ .++|+.++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 99999999999999999999987531 0 122 2235667778888888 77777777654 33343 3367789
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhh
Q 006636 500 AEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 500 ~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
+.++...|++++|..+++++...
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998654
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.40 E-value=1.3e-11 Score=128.22 Aligned_cols=214 Identities=8% Similarity=-0.056 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-hhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 006636 299 IKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDR-DGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFD 377 (637)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 377 (637)
+++++..++...... +.+...+..+...+...|++ ++|.+.|+...+.. +.+...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555555544332 34556666666666667777 77777777666654 2356677777777777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHH
Q 006636 378 DMGKAGIKPDAHAYSILAKGYVRE---------QEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSD--------GSMD 440 (637)
Q Consensus 378 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~ 440 (637)
+..+. .|+..++..+...|... |++++|+..|++..+.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 77765 35567777777777777 88888888888877764 55677888888888777 8888
Q ss_pred HHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 006636 441 RAIEVFDKMCEHGVS--PNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILS 517 (637)
Q Consensus 441 ~A~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~ 517 (637)
+|+..|+++.+.... -+...|..+..+|...|++++|+..|++..+ +.|+ ...+..+..++...|++++|.+.+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888888774320 2667788888888888888888888888766 3444 4467777788888888888877665
Q ss_pred HH
Q 006636 518 KI 519 (637)
Q Consensus 518 ~~ 519 (637)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 54
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.38 E-value=2.2e-11 Score=126.34 Aligned_cols=216 Identities=11% Similarity=-0.016 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006636 158 MEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKP-EESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVM 236 (637)
Q Consensus 158 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 236 (637)
++++...+++...... .+...+..+...|...|++ ++|++.|++..+.. +.+...|..+...|...|++++|+..|
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4556666666554432 3566777777777777777 77777777777654 445677777777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--------CCH
Q 006636 237 HKMAASGMKPDVVTYNTIATAYAQN---------GEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKE--------GKI 299 (637)
Q Consensus 237 ~~~~~~g~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~ 299 (637)
++..+. .|+...+..+...+... |++++|+..|++..+... .+...|..+..+|... |++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchH
Confidence 777765 35566777777777777 777777777777776543 3566777777777777 778
Q ss_pred HHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 006636 300 KEALRFARTMKEYGVH---PNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIF 376 (637)
Q Consensus 300 ~~A~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 376 (637)
++|+..|++..+.. + .+...|..+...|...|++++|.+.|+...+..+ .+...+..+..++...|++++|...+
T Consensus 238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888877653 3 4677788888888888888888888888777653 35667777888888888888888777
Q ss_pred HHHHH
Q 006636 377 DDMGK 381 (637)
Q Consensus 377 ~~~~~ 381 (637)
..+..
T Consensus 316 ~~~~~ 320 (474)
T 4abn_A 316 GKTKP 320 (474)
T ss_dssp TTCCH
T ss_pred ccccC
Confidence 66543
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.36 E-value=6.1e-12 Score=122.84 Aligned_cols=246 Identities=12% Similarity=0.056 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006636 248 VVTYNTIATAYAQNGEADQAEEVIVEMEHN-------GVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVI 320 (637)
Q Consensus 248 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 320 (637)
..++..+...+...|++++|...++++.+. ..+....++..+...|...|++++|...+++.....
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------- 99 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR------- 99 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------
Confidence 345555666666666666666666665441 111223445555555555666666655555544320
Q ss_pred HHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC------CC-CCCHHHHHH
Q 006636 321 FNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKA------GI-KPDAHAYSI 393 (637)
Q Consensus 321 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~ 393 (637)
........+....++..+...|...|++++|...++++.+. +. +....++..
T Consensus 100 ---------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 100 ---------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp ---------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ---------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 00000001112344555566666666666666666665542 11 123455667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCC--
Q 006636 394 LAKGYVREQEPEKAEELLMTMIES------GF-HPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH-------GVSPN-- 457 (637)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~-- 457 (637)
+...|...|++++|..+++++.+. +. +....++..+...|...|++++|...|+++.+. ...+.
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 777777778888888877777653 11 223446777777888888888888888877652 11111
Q ss_pred -----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh
Q 006636 458 -----LKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 458 -----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 523 (637)
...+..+...+...+.+.++...++.... ..|+ ...+..++.++.+.|++++|.++++++....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV--DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCC--CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 11222333344455666667777766543 2233 4478889999999999999999998886553
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.30 E-value=9e-10 Score=110.68 Aligned_cols=168 Identities=10% Similarity=0.027 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHH--
Q 006636 355 TYSTIMNAWSTAGFMDKCKEIFDDMGKAGIK----PDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHP-NVVIFT-- 427 (637)
Q Consensus 355 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~-- 427 (637)
.+..+...+...|++++|...+++....... ....++..+...+...|++++|...+++.......+ +...+.
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 3444555666666666666666665542111 123455666667777777777777777665421111 111121
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCCH-HHH
Q 006636 428 ---TIISGWCSDGSMDRAIEVFDKMCEHGVSP---NLKTFETLMWGYSEARQPWRAEEILQIMKA----FGVHPQK-STF 496 (637)
Q Consensus 428 ---~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~~-~~~ 496 (637)
..+..+...|++++|...+++.......+ ....+..+..++...|++++|...++.... .|..++. ..+
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 296 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 296 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 22233567777777777777765432211 122455666777777777777777776642 2222222 255
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006636 497 LLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 497 ~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
..+..++...|+.++|...+++....
T Consensus 297 ~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 297 LLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56667777788888888877776544
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.30 E-value=2.4e-09 Score=107.53 Aligned_cols=160 Identities=13% Similarity=0.003 Sum_probs=77.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH----HHHHHHHHH
Q 006636 151 AFSESGNMEEAMDTFWKMKESGLTPTTS----TYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNL----RTYNVLVRA 222 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~~li~~ 222 (637)
.+...|++++|...+++........+.. +++.+...+...|++++|...+++......-..+. .++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3445556666666655555433222221 33444455555666666666665554321001111 224445555
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC----ChhhHHHHHH
Q 006636 223 WCNEKNITEAWNVMHKMAAS----GMK--P-DVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQP----NGRTCGIIIS 291 (637)
Q Consensus 223 ~~~~g~~~~A~~~~~~~~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~li~ 291 (637)
+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++........ ...++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 56666666666666555432 111 1 12334445555666666666666665554321110 1233444555
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 006636 292 GYCKEGKIKEALRFARTMK 310 (637)
Q Consensus 292 ~~~~~g~~~~A~~~~~~~~ 310 (637)
.+...|++++|...+++..
T Consensus 183 ~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 5555666666666655554
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.29 E-value=4.4e-10 Score=100.07 Aligned_cols=165 Identities=8% Similarity=0.004 Sum_probs=95.2
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006636 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA 151 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 151 (637)
...|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3445556666666777777777776665432 2355566666666666666666666666666543 4455555556666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006636 152 FSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITE 231 (637)
Q Consensus 152 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 231 (637)
+...|++++|...|+++.+..+ .+...+..+...+...|++++|...+++..... +.+..++..+...+...|++++
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHH
Confidence 6666666666666666555432 244555555555556666666666665555542 3344555555555555555555
Q ss_pred HHHHHHHHHH
Q 006636 232 AWNVMHKMAA 241 (637)
Q Consensus 232 A~~~~~~~~~ 241 (637)
|...++++.+
T Consensus 163 A~~~~~~~~~ 172 (186)
T 3as5_A 163 ALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.29 E-value=1.2e-09 Score=109.92 Aligned_cols=231 Identities=12% Similarity=0.023 Sum_probs=114.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----CC-ChhhHHH
Q 006636 220 VRAWCNEKNITEAWNVMHKMAASGM-KPD----VVTYNTIATAYAQNGEADQAEEVIVEMEHNGV-----QP-NGRTCGI 288 (637)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~-~~~~~~~ 288 (637)
...+...|++++|+..|++..+.-. .++ ..++..+...|...|+++.|...+.+..+... .+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3444566666666666666553210 011 23455555566666666666666655443100 00 1234445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcC
Q 006636 289 IISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVN-PDVITYSTIMNAWSTAG 367 (637)
Q Consensus 289 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 367 (637)
+...|...|++++|+..|.+..+.. .+.+.. ....++..+...|...|
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~lg~~y~~~~ 236 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELA-------------------------------MDIQNDRFIAISLLNIANSYDRSG 236 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHH-------------------------------HHcCCHHHHHHHHHHHHHHHHHCC
Confidence 5555555566666655555543210 000000 01233445555555566
Q ss_pred ChhHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC
Q 006636 368 FMDKCKEIFDDMGK-----AGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESG----FHPNVVIFTTIISGWCSDGS 438 (637)
Q Consensus 368 ~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~ 438 (637)
++++|...+++... .. +....++..+...|.+.|++++|...+++..+.. .+.....+..+...|...|+
T Consensus 237 ~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~ 315 (378)
T 3q15_A 237 DDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD 315 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC
T ss_pred CHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 66666666555544 22 2224555666666666666666666666655421 11122334444445555555
Q ss_pred ---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006636 439 ---MDRAIEVFDKMCEHGVSPN-LKTFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 439 ---~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
+.+|+..+++. +..|+ ...+..+...|...|++++|...|++..
T Consensus 316 ~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 316 ERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555542 11222 2245556666666777777766666654
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.28 E-value=5.4e-10 Score=112.52 Aligned_cols=309 Identities=8% Similarity=-0.038 Sum_probs=137.0
Q ss_pred HHHHHHHHH--HHcCChhHHHHHHHHHHHC--CCCCC--HHHHHHHHHH--HHhcCChhHHH---------HHHHHHHHC
Q 006636 74 SMTKLMNSL--IERGKPQEAQAIFNNLIEG--GHKPS--LVTYTTLLAA--LTIQKRFNSIH---------SIMSQVEEN 136 (637)
Q Consensus 74 ~~~~l~~~~--~~~g~~~~A~~~~~~~~~~--~~~~~--~~~~~~ll~~--~~~~~~~~~a~---------~~~~~~~~~ 136 (637)
.-+.|-..| ...+++++|..+++++... ....| ...|-.++.. ....+.+.... ..++.+...
T Consensus 12 v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 91 (378)
T 3q15_A 12 VGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETP 91 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhcc
Confidence 334455565 7899999999999987652 12223 3333444322 11112222222 333333221
Q ss_pred CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 006636 137 GMDPDS----IFFNAVINAFSESGNMEEAMDTFWKMKESGL-TPT----TSTYNTLIKGYGIAGKPEESVKLLDLMSREG 207 (637)
Q Consensus 137 ~~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 207 (637)
..+.+. ..+......+...|++++|+..|++..+.-. .++ ..++..+...|...|++++|...+.+.....
T Consensus 92 ~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 171 (378)
T 3q15_A 92 QKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY 171 (378)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 100010 0122223334455666666666655543210 011 2344555555555555555555555544311
Q ss_pred CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C
Q 006636 208 NVKP-----NLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQ-P 281 (637)
Q Consensus 208 ~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~ 281 (637)
.-.+ ...+++.+...|...|++++|...|++..+.. .+.+.. .
T Consensus 172 ~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~-------------------------------~~~~~~~~ 220 (378)
T 3q15_A 172 QNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELA-------------------------------MDIQNDRF 220 (378)
T ss_dssp HTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHTTCHHH
T ss_pred HhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-------------------------------HHcCCHHH
Confidence 0001 12344455555555555555555555443310 000000 0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCC----CCCC
Q 006636 282 NGRTCGIIISGYCKEGKIKEALRFARTMKE-----YGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR----VNPD 352 (637)
Q Consensus 282 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~ 352 (637)
...++..+..+|...|++++|+..|.+... .. +....++..+...+.+.|++++|...++...+.. .+..
T Consensus 221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 299 (378)
T 3q15_A 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY 299 (378)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 122344444444444555544444444433 21 1223344444455555555555555554443321 1111
Q ss_pred HHHHHHHHHHHHHcCC---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006636 353 VITYSTIMNAWSTAGF---MDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 353 ~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
...+..+...|...++ +.+|+..++... ..+.....+..+...|.+.|++++|...|++..+
T Consensus 300 ~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 300 KELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2233444444445555 455555554411 0111233455667777777777777777776654
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.26 E-value=2.8e-10 Score=122.91 Aligned_cols=168 Identities=13% Similarity=0.065 Sum_probs=146.1
Q ss_pred CcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006636 69 CRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAV 148 (637)
Q Consensus 69 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (637)
+.++.+|+.|...|.+.|++++|++.|++.++.. +-+..+|..+..++.+.|++++|+..|+++++.. +.+...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3457789999999999999999999999998853 3368889999999999999999999999998875 6678899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 006636 149 INAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN 228 (637)
Q Consensus 149 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 228 (637)
..+|...|++++|++.|++..+..+. +...|+.+..+|...|++++|++.|++..+.. +.+...|..+...+...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHhhhhhHHHhccc
Confidence 99999999999999999999887644 67889999999999999999999999998874 5568889999999999999
Q ss_pred HHHHHHHHHHHHH
Q 006636 229 ITEAWNVMHKMAA 241 (637)
Q Consensus 229 ~~~A~~~~~~~~~ 241 (637)
+++|.+.++++.+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888887764
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.26 E-value=7e-10 Score=98.69 Aligned_cols=161 Identities=16% Similarity=0.074 Sum_probs=77.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006636 110 YTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI 189 (637)
Q Consensus 110 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 189 (637)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+ .+...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence 3444444555555555555555544432 33444455555555555555555555555544322 134444555555555
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006636 190 AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEE 269 (637)
Q Consensus 190 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 269 (637)
.|++++|.+.++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 89 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555554432 3344444445555555555555555555444432 2233444444444444444444444
Q ss_pred HHHHHH
Q 006636 270 VIVEME 275 (637)
Q Consensus 270 ~~~~~~ 275 (637)
.++++.
T Consensus 166 ~~~~~~ 171 (186)
T 3as5_A 166 HFKKAN 171 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.24 E-value=4.3e-10 Score=121.45 Aligned_cols=166 Identities=10% Similarity=0.015 Sum_probs=147.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006636 106 SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIK 185 (637)
Q Consensus 106 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 185 (637)
++.+|+.+..++...|++++|+..|+++++.. +.+...+..+..+|.+.|++++|+..|++..+..+. +..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 57789999999999999999999999999875 667889999999999999999999999999987644 6889999999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 006636 186 GYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEAD 265 (637)
Q Consensus 186 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 265 (637)
+|...|++++|++.|++..+.. +.+..+|+.+...|.+.|++++|+..|++.++.. +-+...+..+..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999998875 5678899999999999999999999999998864 335788899999999999999
Q ss_pred HHHHHHHHHHh
Q 006636 266 QAEEVIVEMEH 276 (637)
Q Consensus 266 ~A~~~~~~~~~ 276 (637)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887654
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.23 E-value=1.2e-09 Score=101.15 Aligned_cols=130 Identities=13% Similarity=0.039 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006636 320 IFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYV 399 (637)
Q Consensus 320 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 399 (637)
.+......+...|++++|...|+...+...+++...+..+..++...|++++|+..+++..+.. +.+..++..+...|.
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHHH
Confidence 3333333444444444444444444333322333333334444444455555555544444432 123344444455555
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006636 400 REQEPEKAEELLMTMIESGFHPNV-------VIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 400 ~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
..|++++|...+++..+.. +.+. ..|..+...+...|++++|+..|+++.+
T Consensus 88 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 5555555555555544432 2233 2344444455555555555555555544
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.23 E-value=1.3e-09 Score=101.04 Aligned_cols=196 Identities=10% Similarity=0.021 Sum_probs=155.5
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006636 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 150 (637)
++..+..+...+...|++++|+..|++.++...+++...+..+..++...|++++|...+++.++.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4567888899999999999999999999986544788888889999999999999999999999875 556788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--CHHHHHHHHH
Q 006636 151 AFSESGNMEEAMDTFWKMKESGLTPTT-------STYNTLIKGYGIAGKPEESVKLLDLMSREGNVKP--NLRTYNVLVR 221 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~~li~ 221 (637)
.|...|++++|+..|++..+..+. +. ..|..+...+...|++++|++.|++..+.. |. +...|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHHH
Confidence 999999999999999999887543 45 458888888999999999999999998864 33 3577888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 006636 222 AWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNG 278 (637)
Q Consensus 222 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 278 (637)
.|...| ..+++++...+ ..+...|.... ....+.+++|...|++..+..
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 886554 34455555543 23444444333 344567899999999998764
No 85
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.12 E-value=1.8e-08 Score=95.29 Aligned_cols=143 Identities=10% Similarity=-0.000 Sum_probs=60.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 006636 302 ALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRV-NPDVITYSTIMNAWSTAGFMDKCKEIFDDMG 380 (637)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 380 (637)
|+..|++....+ .++..++..+..++...|++++|.+++...+..+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444443332 23333333444444555555555555554433332 1233444444455555555555555555554
Q ss_pred HCCCCC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006636 381 KAGIKP-----DAHAYSILAKG--YVREQ--EPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKM 449 (637)
Q Consensus 381 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 449 (637)
+. .| +..+...|+.+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 43 23 12333333333 11222 455555555554433 233222222222445555555555555543
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.12 E-value=6e-10 Score=106.77 Aligned_cols=228 Identities=11% Similarity=0.064 Sum_probs=156.3
Q ss_pred HcCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC------CC-CCCHHHHHHHH
Q 006636 84 ERGKPQEAQAIFNNLIE-------GGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEEN------GM-DPDSIFFNAVI 149 (637)
Q Consensus 84 ~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll 149 (637)
..|++++|+..|++.++ ...+....++..+...+...|++++|...++++++. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34566666666665544 122235667888899999999999999999998764 21 22356788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC-----CC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------CCCCCCHHHH
Q 006636 150 NAFSESGNMEEAMDTFWKMKES-----GL--TPTTSTYNTLIKGYGIAGKPEESVKLLDLMSRE------GNVKPNLRTY 216 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~~-----~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~~~~ 216 (637)
..|...|++++|...|++..+. +. +....++..+...|...|++++|...|++.... ...+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999988764 11 223567888999999999999999999998765 1112235678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHHcCCHH------HHHHHHHHHHhCCCCCC
Q 006636 217 NVLVRAWCNEKNITEAWNVMHKMAAS-------GMKP-DVVTYNTIATAYAQNGEAD------QAEEVIVEMEHNGVQPN 282 (637)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~~~~~-------g~~~-~~~~~~~li~~~~~~g~~~------~A~~~~~~~~~~~~~~~ 282 (637)
..+...|...|++++|...++++.+. ...+ ....|..+...+...+... .+...+..... ..+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHH
Confidence 89999999999999999999988763 1122 2233333333333333322 22222222111 11223
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006636 283 GRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 283 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
..++..+...|...|++++|..+|++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567888999999999999999999988753
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.10 E-value=1.3e-09 Score=104.44 Aligned_cols=123 Identities=15% Similarity=0.046 Sum_probs=60.2
Q ss_pred hcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHH
Q 006636 119 IQKRFNSIHSIMSQVEEN-------GMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKES------GL-TPTTSTYNTLI 184 (637)
Q Consensus 119 ~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~------~~-~~~~~~~~~li 184 (637)
..|++++|...+++.++. ..+....++..+...|...|++++|...|++..+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 345556666655554431 11122445555666666666666666666655432 11 11233455555
Q ss_pred HHHHhcCChHHHHHHHHHHHhc------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006636 185 KGYGIAGKPEESVKLLDLMSRE------GNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAA 241 (637)
Q Consensus 185 ~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 241 (637)
..|...|++++|...|.+.... ...+....++..+...|...|++++|...++++.+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 155 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE 155 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555666665555555432 00011234444455555555555555555554443
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.08 E-value=2.5e-09 Score=103.27 Aligned_cols=167 Identities=14% Similarity=0.038 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCC-CCC----
Q 006636 354 ITYSTIMNAWSTAGFMDKCKEIFDDMGKAGI---KP--DAHAYSILAKGYVRE-QEPEKAEELLMTMIESGF-HPN---- 422 (637)
Q Consensus 354 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~-~~~---- 422 (637)
.+|+.+..+|...|++++|+..+++.++... .+ -..+++.+...|... |++++|+..|++..+... ..+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 4555566666666666666666666543210 00 134677777888885 888888888888765310 011
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--
Q 006636 423 VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNL------KTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS-- 494 (637)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-- 494 (637)
..++..+...+...|++++|+..|+++.+....... ..|..+..++...|++++|+..|++..+ +.|+..
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~ 235 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C-------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCc
Confidence 346777888888888888888888888875432221 1566777778888888888888888754 344321
Q ss_pred ----HHHHHHHHHH--HcCCHHHHHHHHHHHhhh
Q 006636 495 ----TFLLLAEARR--ATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 495 ----~~~~l~~~~~--~~g~~~eA~~~~~~~~~~ 522 (637)
.+..++.++. ..+++++|...++++...
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 2344555554 446678888887776544
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.06 E-value=7.4e-08 Score=91.16 Aligned_cols=246 Identities=9% Similarity=0.004 Sum_probs=165.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006636 79 MNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNM 158 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 158 (637)
++...-.|++..++.-...+. .......-..+.+++...|++.... .-.|....+..+. .|...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la-~~~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYV-QFLDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHH-HHHTTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHH-HHhccc--
Confidence 556667899999887433332 1223334455668888888876421 1234433433333 333322
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006636 159 EEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHK 238 (637)
Q Consensus 159 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 238 (637)
|+..|++..+.+ .++..++..+..++...|++++|++++.+....+...-+...+..++..+.+.|+.+.|.+.+++
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 778888887655 44666777888999999999999999998866541124678888889999999999999999999
Q ss_pred HHHCCCCC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006636 239 MAASGMKP-----DVVTYNTIATA--YAQNG--EADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTM 309 (637)
Q Consensus 239 ~~~~g~~~-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 309 (637)
|.+. .| +..+...|+.+ ....| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9875 45 24555556655 33334 899999999998765 244333444555888899999999998876
Q ss_pred HHCC---------CCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCC
Q 006636 310 KEYG---------VHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR 348 (637)
Q Consensus 310 ~~~~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 348 (637)
.+.- -+.+..++..++......|+ ++.+++.++.+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 5420 13456666555555555665 7778888887765
No 90
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.06 E-value=5.2e-07 Score=93.39 Aligned_cols=125 Identities=8% Similarity=-0.017 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006636 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS-DGSMDRAIEVFDKMCEHGVSPNLKTFETLMWG 467 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 467 (637)
.+|...+..+.+.+..+.|..+|.++ +.. +.+...|......-.. .++.+.|..+|+...+.-. -++..+...+..
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~-~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP-DSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 55677777777788899999999998 332 2344555433332222 3369999999999987532 235556667777
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 006636 468 YSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKN 521 (637)
Q Consensus 468 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 521 (637)
..+.|+.+.|..+|+++. .....|...++.-...|+.+.+..+++++..
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788899999999998862 2466788888887888999999998888764
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.05 E-value=4.4e-09 Score=101.53 Aligned_cols=199 Identities=12% Similarity=0.042 Sum_probs=121.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006636 255 ATAYAQNGEADQAEEVIVEMEHN----GVQPN-GRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFV 329 (637)
Q Consensus 255 i~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 329 (637)
+..|...|++++|...|.+.... +-+++ ..+++.+..+|.+.|++++|+..|++.... +.
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~~ 108 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI---------------FT 108 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------HH
Confidence 45556666666666666555432 11111 344555555555566666665555554421 11
Q ss_pred HcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHHcCC
Q 006636 330 EIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTA-GFMDKCKEIFDDMGKAGIKP-D----AHAYSILAKGYVREQE 403 (637)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~ 403 (637)
..|+...+ ..++..+..+|... |++++|+..|++..+..... + ..++..+...|.+.|+
T Consensus 109 ~~g~~~~~---------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 173 (292)
T 1qqe_A 109 HRGQFRRG---------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ 173 (292)
T ss_dssp HTTCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HcCCHHHH---------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC
Confidence 11221111 23566777788885 88888888888876531110 1 3567888889999999
Q ss_pred HHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHH--
Q 006636 404 PEKAEELLMTMIESGFHPNV------VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK------TFETLMWGYS-- 469 (637)
Q Consensus 404 ~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~l~~~~~-- 469 (637)
+++|+..|++..+....... ..|..++.++...|++++|+..|++..+. .|+.. .+..++.++.
T Consensus 174 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~ 251 (292)
T 1qqe_A 174 YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEG 251 (292)
T ss_dssp HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcC
Confidence 99999999998876322211 15677888889999999999999988763 33321 3445566664
Q ss_pred hcCChhHHHHHHHHHH
Q 006636 470 EARQPWRAEEILQIMK 485 (637)
Q Consensus 470 ~~g~~~~A~~~~~~m~ 485 (637)
..+++++|+..|+++.
T Consensus 252 ~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 252 DSEQLSEHCKEFDNFM 267 (292)
T ss_dssp CTTTHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHhccCC
Confidence 3566778888776653
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.02 E-value=1.9e-08 Score=83.77 Aligned_cols=125 Identities=18% Similarity=0.169 Sum_probs=51.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006636 393 ILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEAR 472 (637)
Q Consensus 393 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 472 (637)
.++..|...|++++|..+++++.+.. +.+...+..+...+...|++++|..+|+++.+.+. .+...+..+...+...|
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHhc
Confidence 33444444444444444444443332 22334444444444444444444444444443221 12333444444444444
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006636 473 QPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 473 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
++++|..+++++.+.. ..+...+..++.++.+.|++++|...++++.
T Consensus 84 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 84 DYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4444444444443311 1123334444444444444444444444443
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.00 E-value=2.9e-08 Score=82.67 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=8.0
Q ss_pred HHHHHHHcCChhHHHHHHHHH
Q 006636 78 LMNSLIERGKPQEAQAIFNNL 98 (637)
Q Consensus 78 l~~~~~~~g~~~~A~~~~~~~ 98 (637)
+...+...|++++|+.+|+++
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~ 27 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKA 27 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHH
Confidence 333333333333333333333
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.99 E-value=1.5e-08 Score=96.08 Aligned_cols=59 Identities=10% Similarity=0.048 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CChhHHHHHHHHHHH
Q 006636 428 TIISGWCSDGSMDRAIEVFDKMCEHGVSP--NLKTFETLMWGYSEA----------RQPWRAEEILQIMKA 486 (637)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~ 486 (637)
.+...|...|++++|+..|+++++..... ....+..+..+|... |++++|...|+++.+
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 34445555555555555555555432110 122444444444433 444555555555543
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.99 E-value=2.7e-08 Score=90.54 Aligned_cols=126 Identities=7% Similarity=0.028 Sum_probs=65.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 006636 147 AVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNE 226 (637)
Q Consensus 147 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 226 (637)
.+...|.+.|++++|+..|++..+..+. +...+..+...|...|++++|+..|++..+.. |.+..+|..+...|...
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHH
Confidence 3555666666666666666666655433 55566666666666666666666666666553 34455666666555443
Q ss_pred CC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006636 227 KN--ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHN 277 (637)
Q Consensus 227 g~--~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 277 (637)
|. ...+...++.... ..|....+..+..++...|++++|...|++.++.
T Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 32 2333334433321 1122222333444445555666666666665543
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.99 E-value=2.1e-08 Score=91.29 Aligned_cols=131 Identities=9% Similarity=0.007 Sum_probs=72.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006636 358 TIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDG 437 (637)
Q Consensus 358 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 437 (637)
.+..+|...|++++|+..|++.++.. +.+...+..+...|...|++++|...|+++.+.. |.+..+|..+...|...|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 35566666666666666666666543 3356666666666666666666666666666653 445666666666655444
Q ss_pred C--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 006636 438 S--MDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS 494 (637)
Q Consensus 438 ~--~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 494 (637)
. ...+...++.... ..|....+..+..++...|++++|+..|++..+ +.|+.+
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~ 191 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHH
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHH
Confidence 3 2334444444322 112222333344455556666666666666654 455544
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.96 E-value=3.2e-08 Score=93.70 Aligned_cols=100 Identities=12% Similarity=0.051 Sum_probs=50.7
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-C-CCHHHH
Q 006636 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPS---LVTYTTLLAALTIQKRFNSIHSIMSQVEENGM-D-PDSIFF 145 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~~ 145 (637)
++..+-.+...+.+.|++++|+..|+++++.. +.+ ..++..+..++...|++++|...|+++++... . .....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34444555555566666666666666665532 112 34555555555555666666666655555420 0 112334
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHC
Q 006636 146 NAVINAFSE--------SGNMEEAMDTFWKMKES 171 (637)
Q Consensus 146 ~~ll~~~~~--------~g~~~~A~~~~~~m~~~ 171 (637)
..+..++.. .|++++|+..|+++.+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 444445555 55555555555555543
No 98
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.96 E-value=6.9e-07 Score=85.44 Aligned_cols=241 Identities=10% Similarity=0.014 Sum_probs=187.6
Q ss_pred HHHHHHcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH---
Q 006636 79 MNSLIERGK-PQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQK--RFNSIHSIMSQVEENGMDPDSIFFNAVINAF--- 152 (637)
Q Consensus 79 ~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--- 152 (637)
+.+..+.|. .++|+.+++.++..+ +-+..+|+.--.++...+ ++++++..++.++... +.+..+|+.-...+
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~ 116 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQI 116 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHH
Confidence 344445555 469999999999853 336778999988888888 9999999999999876 66677777766666
Q ss_pred -Hhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 006636 153 -SES---GNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPE--ESVKLLDLMSREGNVKPNLRTYNVLVRAWCNE 226 (637)
Q Consensus 153 -~~~---g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 226 (637)
... +++++++.+++++.+..++ +..+|+.-.-.+.+.|.++ ++++.++++.+.. +.|...|+.-.....+.
T Consensus 117 ~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 117 MELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSK 193 (306)
T ss_dssp HHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSS
T ss_pred HHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhc
Confidence 555 7899999999999988755 8889998888888899888 9999999999875 67889998888887777
Q ss_pred CC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhCC--CCCChhhHHHHHHHHHhcC
Q 006636 227 KN------ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQ-AEEVIVEMEHNG--VQPNGRTCGIIISGYCKEG 297 (637)
Q Consensus 227 g~------~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g 297 (637)
+. ++++++.+++++... +-|...|+.+...+.+.|+... +..+..++...+ -..+...+..++..|.+.|
T Consensus 194 ~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~ 272 (306)
T 3dra_A 194 KHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK 272 (306)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred cccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence 76 899999999988775 4588889988888888887544 445555554432 1246678888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006636 298 KIKEALRFARTMKEYGVHPNLVIFNLLI 325 (637)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll 325 (637)
+.++|+++++.+.+.--+.....|+...
T Consensus 273 ~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 273 KYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp CHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 9999999999987631144555555443
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.96 E-value=5.3e-09 Score=113.50 Aligned_cols=173 Identities=10% Similarity=-0.049 Sum_probs=137.9
Q ss_pred HHcCCHhhHHHHHHHHh--------hCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006636 329 VEIMDRDGVDEVLALMK--------EFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVR 400 (637)
Q Consensus 329 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 400 (637)
...|++++|.+.++... +.. +.+...+..+..++...|++++|+..++++.+.. +.+...|..+...|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 56788888988888887 433 3456778888888999999999999999988764 4477888899999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006636 401 EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEI 480 (637)
Q Consensus 401 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 480 (637)
.|++++|...|++..+.. +.+...|..+..+|...|++++ +..|+++.+.+.. +...|..+..++...|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999988874 5577888999999999999999 9999999886432 567888999999999999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHHHcCC
Q 006636 481 LQIMKAFGVHPQK-STFLLLAEARRATGL 508 (637)
Q Consensus 481 ~~~m~~~g~~p~~-~~~~~l~~~~~~~g~ 508 (637)
|+++.+ +.|+. ..+..++.++...|.
T Consensus 557 ~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 988765 56764 467677777766554
No 100
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.95 E-value=3e-06 Score=87.65 Aligned_cols=360 Identities=6% Similarity=-0.032 Sum_probs=192.3
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHH----hcCCH
Q 006636 86 GKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKR-FNSIHSIMSQVEEN-GM-DPDSIFFNAVINAFS----ESGNM 158 (637)
Q Consensus 86 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~ll~~~~----~~g~~ 158 (637)
|+++.+..+|++.+.. .|+...|...+.-..+.++ .+....+|+.++.. |. +.+..+|...+..+. ..+++
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7788888888887763 4677777777766666553 35566677766553 32 335667777666543 23567
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006636 159 EEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHK 238 (637)
Q Consensus 159 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 238 (637)
+.+..+|++........-...|......-.. .....+..++.+.. +.+..|..+++.
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~-~~~~~~~~~~~~~~----------------------~~y~~ar~~y~~ 162 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELE-LNKITGKKIVGDTL----------------------PIFQSSFQRYQQ 162 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-HCHHHHHHHHHHHH----------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHH-hccccHHHHHHHHh----------------------HHHHHHHHHHHH
Confidence 7778888877764211111122222211111 11111222211110 122223333322
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcC--C-----HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006636 239 MAASGMKPDVVTYNTIATAYAQNG--E-----ADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 239 ~~~~g~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
+...-...+...|...+..-...+ - .+.+..+|++++... +.+...|...+..+.+.|++++|..++++...
T Consensus 163 ~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~ 241 (493)
T 2uy1_A 163 IQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIE 241 (493)
T ss_dssp HHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 221100012334443333321110 0 233455666665532 23455666666666666667777777766665
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHhhHH-HHHHHHhhC--------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 006636 312 YGVHPNLVIFNLLIKGFVEIMDRDGVD-EVLALMKEF--------RVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKA 382 (637)
Q Consensus 312 ~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 382 (637)
. +.+...|.. |....+.++.. .+.+..... ........|...+....+.+.++.|..+|... +.
T Consensus 242 ~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~ 314 (493)
T 2uy1_A 242 M--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN 314 (493)
T ss_dssp H--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT
T ss_pred C--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC
Confidence 5 333322221 22211111111 111110000 00112345666666666778899999999988 32
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006636 383 GIKPDAHAYSILAKGYVREQ-EPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTF 461 (637)
Q Consensus 383 ~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 461 (637)
...+..+|...+..-...+ +.+.|..+|+...+.- +.++..|...+......|+.+.|..+|+++. .....|
T Consensus 315 -~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw 387 (493)
T 2uy1_A 315 -EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMW 387 (493)
T ss_dssp -SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHH
T ss_pred -CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHH
Confidence 1234555554444333344 6999999999988752 4456667777877788899999999999872 256678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 006636 462 ETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 462 ~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
...+..-...|+.+.+..+++++.
T Consensus 388 ~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 388 DSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 888877777899988888887775
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.94 E-value=1.3e-07 Score=86.11 Aligned_cols=175 Identities=16% Similarity=0.081 Sum_probs=90.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHH
Q 006636 126 IHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAG----KPEESVKLLD 201 (637)
Q Consensus 126 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~ 201 (637)
|...|++..+.| +...+..|...|...+++++|+..|++..+.| ++..+..|...|.. + ++++|++.|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 344444444432 44445555555555555555555555555543 34445555555544 4 5555555555
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 006636 202 LMSREGNVKPNLRTYNVLVRAWCN----EKNITEAWNVMHKMAASGMK-PDVVTYNTIATAYAQ----NGEADQAEEVIV 272 (637)
Q Consensus 202 ~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~ 272 (637)
+..+.+ +...+..|...|.. .+++++|+.+|++..+.|.. .+...+..|..+|.. .+++++|..+|+
T Consensus 78 ~A~~~g----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 78 KAVEAG----SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHTT----CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHCC----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 554432 44555555555554 55566666666655554311 014455555555555 555666666666
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 006636 273 EMEHNGVQPNGRTCGIIISGYCKE-G-----KIKEALRFARTMKEYG 313 (637)
Q Consensus 273 ~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~~~~~~ 313 (637)
+..+. ..+...+..|..+|... | ++++|+..|++..+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 65554 12334455555555442 2 5666666666665544
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.93 E-value=1.6e-08 Score=109.81 Aligned_cols=170 Identities=12% Similarity=0.013 Sum_probs=91.9
Q ss_pred HHcCChhHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006636 83 IERGKPQEAQAIFNNLI--------EGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE 154 (637)
Q Consensus 83 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 154 (637)
...|++++|++.|++.. +. .+.+...+..+..++...|++++|...|+++++.. +.+...+..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 44556666666666655 22 12344555555555666666666666666655543 4455555555556666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006636 155 SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWN 234 (637)
Q Consensus 155 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 234 (637)
.|++++|+..|++..+..+. +...|..+..+|.+.|++++ ++.|++..+.. +.+...|..+..++.+.|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666665554332 44555555556666666666 66666555543 3445555556666666666666666
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHH
Q 006636 235 VMHKMAASGMKPD-VVTYNTIATAYAQ 260 (637)
Q Consensus 235 ~~~~~~~~g~~~~-~~~~~~li~~~~~ 260 (637)
.|+++.+. .|+ ...+..+..++..
T Consensus 556 ~~~~al~l--~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 556 TLDEVPPT--SRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHTSCTT--STTHHHHHHHHHHHTC-
T ss_pred HHHhhccc--CcccHHHHHHHHHHHHc
Confidence 66555443 222 3344444444433
No 103
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.93 E-value=3.3e-09 Score=90.84 Aligned_cols=144 Identities=10% Similarity=0.049 Sum_probs=102.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006636 360 MNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSM 439 (637)
Q Consensus 360 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 439 (637)
...+...|++++|+..+....... +.+...+..+...|.+.|++++|++.|++.++.. +.+..+|..+..+|...|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 344556677888888887776532 2234455677888888888888888888888764 56778888888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH-HHHHHHCCCCCC-HHHHHHHHHHHHHcCC
Q 006636 440 DRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEI-LQIMKAFGVHPQ-KSTFLLLAEARRATGL 508 (637)
Q Consensus 440 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 508 (637)
++|+..|+++++..+. +...+..+...|...|+.++|.+. +++..+ +.|+ ...|.....++.+.|+
T Consensus 82 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCc
Confidence 8888888888875422 566788888888888888776655 477666 4555 4456666666666654
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.90 E-value=1.8e-07 Score=85.29 Aligned_cols=176 Identities=11% Similarity=0.044 Sum_probs=143.7
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHH
Q 006636 89 QEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESG----NMEEAMDT 164 (637)
Q Consensus 89 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g----~~~~A~~~ 164 (637)
.+|++.|++..+. -++.++..+...+...+++++|...|++..+.| +...+..|...|.. + ++++|...
T Consensus 3 ~eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 3577788888874 477888888888888999999999999998865 67778888888887 6 89999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHh----cCCHHHHH
Q 006636 165 FWKMKESGLTPTTSTYNTLIKGYGI----AGKPEESVKLLDLMSREGNVKPN---LRTYNVLVRAWCN----EKNITEAW 233 (637)
Q Consensus 165 ~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~---~~~~~~li~~~~~----~g~~~~A~ 233 (637)
|++..+.| +...+..|...|.. .+++++|+..|++..+.+ ++ ...+..|...|.. .+++++|+
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~---~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 149 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS---ESDAAVDAQMLLGLIYASGVHGPEDDVKAS 149 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST---TSHHHHHHHHHHHHHHHHTSSSSCCHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC---CCcchHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 99998865 67788888888877 789999999999998765 32 7888899999988 88999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhCCC
Q 006636 234 NVMHKMAASGMKPDVVTYNTIATAYAQN-G-----EADQAEEVIVEMEHNGV 279 (637)
Q Consensus 234 ~~~~~~~~~g~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~~~~~~~ 279 (637)
.+|++..+. ..+...+..|..+|... | ++++|..+|++..+.|.
T Consensus 150 ~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 150 EYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999876 23455677788888754 3 89999999999887764
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.89 E-value=1.6e-08 Score=89.25 Aligned_cols=160 Identities=10% Similarity=0.090 Sum_probs=69.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HH
Q 006636 75 MTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA-FS 153 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~ 153 (637)
+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++++.+.. |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 3344555666666666666666654421 2245555556666666666666666665554432 233222221111 11
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006636 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAW 233 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 233 (637)
..+....|...|++..+..+. +...+..+...+...|++++|+..|+++.+...-..+...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 111112234444444433221 3344444444444444444444444444433200011234444444444444444444
Q ss_pred HHHHH
Q 006636 234 NVMHK 238 (637)
Q Consensus 234 ~~~~~ 238 (637)
..|++
T Consensus 165 ~~y~~ 169 (176)
T 2r5s_A 165 SKYRR 169 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.88 E-value=7.3e-08 Score=92.56 Aligned_cols=162 Identities=11% Similarity=0.060 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHH-HHH
Q 006636 143 IFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNV-LVR 221 (637)
Q Consensus 143 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~-li~ 221 (637)
..+..+...+...|++++|...|++..+..+. +...+..+...+.+.|++++|...++++.... |+...... ...
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~---p~~~~~~~~~~~ 193 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD---QDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG---CSHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh---cchHHHHHHHHH
Confidence 33444444444444444444444444443322 33444444444444444444444444444322 22221111 112
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHH
Q 006636 222 AWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQP-NGRTCGIIISGYCKEGKIK 300 (637)
Q Consensus 222 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~ 300 (637)
.+...++.++|...+++..... +.+...+..+...+...|++++|...|.++.+..... +...+..++..|...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 2333444444444444444332 2234444444444444455555554444444432211 1334444445555555544
Q ss_pred HHHHHHHHH
Q 006636 301 EALRFARTM 309 (637)
Q Consensus 301 ~A~~~~~~~ 309 (637)
+|...|++.
T Consensus 273 ~a~~~~r~a 281 (287)
T 3qou_A 273 ALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 444444443
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.88 E-value=3.9e-08 Score=86.75 Aligned_cols=159 Identities=11% Similarity=0.034 Sum_probs=83.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHh
Q 006636 111 TTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKG-YGI 189 (637)
Q Consensus 111 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~ 189 (637)
..+...+...|++++|...|+++++.. |.+...+..+...+...|++++|+..|++.....+ +...+..+... +..
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHh
Confidence 344455556666666666666655443 44555666666666666666666666666554432 33322222111 112
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 006636 190 AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKP-DVVTYNTIATAYAQNGEADQAE 268 (637)
Q Consensus 190 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~ 268 (637)
.+...+|+..|++..+.. |.+...+..+...+...|++++|...|+++.+....+ +...+..+..++...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 222333555555555543 3345556666666666666666666666655543221 2334555555566666666665
Q ss_pred HHHHHH
Q 006636 269 EVIVEM 274 (637)
Q Consensus 269 ~~~~~~ 274 (637)
..|++.
T Consensus 165 ~~y~~a 170 (176)
T 2r5s_A 165 SKYRRQ 170 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 108
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.88 E-value=2.1e-06 Score=82.15 Aligned_cols=217 Identities=9% Similarity=0.043 Sum_probs=111.9
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CChH
Q 006636 124 NSIHSIMSQVEENGMDPDSIFFNAVINAFSESG--NMEEAMDTFWKMKESGLTPTTSTYNTLIKGY----GIA---GKPE 194 (637)
Q Consensus 124 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~----~~~---g~~~ 194 (637)
++|+.++++++..+ |.+..+|+.--..+...+ ++++++..++.+....++ +..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 46666666666654 445556666666666666 666666666666665443 444555444443 333 4555
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006636 195 ESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNIT--EAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIV 272 (637)
Q Consensus 195 ~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 272 (637)
+++.+++.+.... +.+..+|+--.-.+.+.|.++ ++++.++++.+.
T Consensus 128 ~EL~~~~~~l~~~--pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~------------------------------ 175 (306)
T 3dra_A 128 REFDILEAMLSSD--PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT------------------------------ 175 (306)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH------------------------------
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh------------------------------
Confidence 5555555555543 445555555544444444444 444444444443
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhh-HHHHHHHHh
Q 006636 273 EMEHNGVQPNGRTCGIIISGYCKEGK------IKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDG-VDEVLALMK 345 (637)
Q Consensus 273 ~~~~~~~~~~~~~~~~li~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~ 345 (637)
.+ .|...|+.....+.+.+. ++++++.+++++... +.|...|+.+...+.+.|+... +..+...+.
T Consensus 176 -----d~-~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~ 248 (306)
T 3dra_A 176 -----DL-KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFV 248 (306)
T ss_dssp -----CT-TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTE
T ss_pred -----CC-CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 22 233334333333333332 566666666666554 4566666666666655555332 333444333
Q ss_pred hCC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 006636 346 EFR--VNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGK 381 (637)
Q Consensus 346 ~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 381 (637)
..+ -..+...+..++.+|.+.|+.++|.++++.+.+
T Consensus 249 ~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 249 DLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp EGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 221 123445555555555555555555555555543
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.86 E-value=2.5e-07 Score=85.29 Aligned_cols=187 Identities=12% Similarity=0.019 Sum_probs=120.8
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHHH
Q 006636 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHK-P-SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDS---IFFN 146 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~ 146 (637)
+..+..+...+.+.|++++|+..|++++..... | ...++..+..++...|++++|...|+++++.. |.+. ..+.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHH
Confidence 345566778889999999999999999874321 1 13577888899999999999999999998764 2222 2344
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 006636 147 AVINAFSE------------------SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGN 208 (637)
Q Consensus 147 ~ll~~~~~------------------~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 208 (637)
.+...+.. .|++++|...|+++.+..+. +...+....... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----------HHHHHH-----
Confidence 44444443 34566666666666654322 222222111100 000000
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 006636 209 VKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPD--VVTYNTIATAYAQNGEADQAEEVIVEMEHNGV 279 (637)
Q Consensus 209 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 279 (637)
......+...|.+.|++++|+..|+++.+...... ...+..+..+|.+.|++++|.+.++.+...++
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01123567788889999999999999887632111 24677888899999999999999998877643
No 110
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.85 E-value=1.3e-08 Score=87.20 Aligned_cols=142 Identities=7% Similarity=-0.025 Sum_probs=92.3
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006636 80 NSLIERGKPQEAQAIFNNLIEGGHKP-SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNM 158 (637)
Q Consensus 80 ~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 158 (637)
..+...|++++|+..++..... .| +...+..+...|...|++++|...|+++++.. +.+..+|..+...|.+.|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 3444566777777777776542 22 33445566777777777777777777777765 55677777777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH-HHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 006636 159 EEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKL-LDLMSREGNVKPNLRTYNVLVRAWCNEK 227 (637)
Q Consensus 159 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~~~~~~~~~~li~~~~~~g 227 (637)
++|+..|++..+..+. +..+|..+...|.+.|+.++|.+. +++..+.. |.+..+|......+...|
T Consensus 82 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~--P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 82 DKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF--PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhC
Confidence 7777777777766533 566777777777777777665544 46665543 445666666555555554
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.84 E-value=9.6e-08 Score=91.73 Aligned_cols=158 Identities=6% Similarity=-0.034 Sum_probs=63.3
Q ss_pred HHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHH
Q 006636 322 NLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSI-LAKGYVR 400 (637)
Q Consensus 322 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~ 400 (637)
..+...+...|++++|...++...+..+ .+...+..+...+...|++++|...++.+.... |+...... ....+.+
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~~l~~ 197 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQIELLX 197 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHHHHHh
Confidence 3333333444444444444444433321 233334444444444444444444444443321 22221111 1112333
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHH
Q 006636 401 EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSP-NLKTFETLMWGYSEARQPWRAEE 479 (637)
Q Consensus 401 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 479 (637)
.++.++|...+++..+.. +.+...+..+...+...|++++|+..|+++.+..... +...+..++..+...|+.++|..
T Consensus 198 ~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~ 276 (287)
T 3qou_A 198 QAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALAS 276 (287)
T ss_dssp HHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHH
T ss_pred hcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHH
Confidence 344444444444444432 3344444444444444444444444444444432110 12344444444444454444444
Q ss_pred HHHH
Q 006636 480 ILQI 483 (637)
Q Consensus 480 ~~~~ 483 (637)
.+++
T Consensus 277 ~~r~ 280 (287)
T 3qou_A 277 XYRR 280 (287)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.83 E-value=2.3e-07 Score=85.43 Aligned_cols=186 Identities=10% Similarity=-0.011 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHH
Q 006636 318 LVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPD--VITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD--AHAYSI 393 (637)
Q Consensus 318 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ 393 (637)
...+..+...+...|++++|...|+.+.+..+... ...+..+..+|.+.|++++|+..|+.+++...... ..++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455556667777777777777777766432211 34566667777777777777777777776432111 123444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--------------
Q 006636 394 LAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK-------------- 459 (637)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-------------- 459 (637)
+..++.+.+.. .+ ..|..+...+...|+.++|+..|+++++.. |+..
T Consensus 84 ~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHH
Confidence 44444432100 00 000011111122344444444444444421 2211
Q ss_pred ----HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc
Q 006636 460 ----TFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ----KSTFLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 460 ----~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
....+...+...|++++|+..|+++.+ ..|+ ...+..++.++.+.|+.++|.+.++.+....|
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLR--DYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH--HCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 113456778889999999999999876 3344 24678889999999999999999988765544
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.81 E-value=1.3e-07 Score=100.58 Aligned_cols=154 Identities=12% Similarity=-0.027 Sum_probs=118.6
Q ss_pred cCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006636 331 IMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEEL 410 (637)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 410 (637)
.|++++|...+++..+.. +.+...+..+...|...|++++|...+++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467889999999987765 3467889999999999999999999999998874 44688999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHHC
Q 006636 411 LMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEA---RQPWRAEEILQIMKAF 487 (637)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~ 487 (637)
+++..+.. +.+...+..+..+|...|++++|++.|+++.+... .+...+..+..++... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998874 66788999999999999999999999999988643 2577888999999999 9999999999998763
Q ss_pred C
Q 006636 488 G 488 (637)
Q Consensus 488 g 488 (637)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.81 E-value=1.3e-07 Score=100.76 Aligned_cols=154 Identities=8% Similarity=-0.091 Sum_probs=112.0
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006636 85 RGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDT 164 (637)
Q Consensus 85 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 164 (637)
.|++++|++.|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467888888888887642 3367788888888888899999999999888775 56678888888888899999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHH
Q 006636 165 FWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNE---KNITEAWNVMHKMAA 241 (637)
Q Consensus 165 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~ 241 (637)
|++..+..+. +...+..+...|...|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++..+
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9888876543 67788888888889999999999998888764 45678888888888888 888899888888877
Q ss_pred CC
Q 006636 242 SG 243 (637)
Q Consensus 242 ~g 243 (637)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 64
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.76 E-value=1.4e-07 Score=91.73 Aligned_cols=155 Identities=12% Similarity=-0.023 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCC--C-CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HH
Q 006636 355 TYSTIMNAWSTAGFMDKCKEIFDDMGKAG--I-KP--DAHAYSILAKGYVREQEPEKAEELLMTMIESGFH-PN----VV 424 (637)
Q Consensus 355 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~ 424 (637)
++..+...|...|++++|+..|++..+.- . .+ ...++..+...|.. |++++|+..|++..+.... .+ ..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 45555666666677777776666654320 0 11 13466677777777 8888888888877653100 01 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----H--
Q 006636 425 IFTTIISGWCSDGSMDRAIEVFDKMCEH----GVSPN-LKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ----K-- 493 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~----~-- 493 (637)
++..+...|...|++++|+..|++..+. +..+. ...+..++.++...|++++|...|++.. +.|+ .
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al---~~p~~~~~~e~ 233 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY---SIPGFSGSEDC 233 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSTTSTTSHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh---CCCCCCCCHHH
Confidence 6778888888889999999888888753 11111 2256666777777899999999888876 2332 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHH
Q 006636 494 STFLLLAEARRATGLTKEAKR 514 (637)
Q Consensus 494 ~~~~~l~~~~~~~g~~~eA~~ 514 (637)
.....++.++ ..|+.+.+..
T Consensus 234 ~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 234 AALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHH-HhcCHHHHHH
Confidence 1233444444 5677666555
No 116
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.74 E-value=7.2e-06 Score=79.21 Aligned_cols=231 Identities=8% Similarity=0.030 Sum_probs=170.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006636 76 TKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQK-RFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE 154 (637)
Q Consensus 76 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 154 (637)
+.+-....+.+..++|+++++.++..+ +-+..+|+.--.++...+ .+++++..++.++... +.+..+|+.-...+.+
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 333333444556679999999999853 337778998888888888 5999999999999876 7788889988888877
Q ss_pred c-C-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 006636 155 S-G-NMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPE--------ESVKLLDLMSREGNVKPNLRTYNVLVRAWC 224 (637)
Q Consensus 155 ~-g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 224 (637)
. + ++++++.+++++.+..+. +..+|+.-.-.+.+.|.++ ++++.++++.+.. +.|..+|+.....+.
T Consensus 136 l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRV 212 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHT
T ss_pred hcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 7 7 889999999999988655 7888888777777767666 8999999999875 678999999988888
Q ss_pred hcCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHhC
Q 006636 225 NEKN-------ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEA--------------------DQAEEVIVEMEHN 277 (637)
Q Consensus 225 ~~g~-------~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~~~~ 277 (637)
+.+. ++++++.++++.... +-|...|+.+-..+.+.|.. ........++...
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSD 291 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-
T ss_pred hccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhc
Confidence 8876 788999998888764 44788888777777776654 1222222222221
Q ss_pred C-----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006636 278 G-----VQPNGRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 278 ~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
. -.++...+..+++.|...|+.++|.++++.+.+.
T Consensus 292 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 292 PLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1 0245566677778888888888888888877643
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.72 E-value=6.6e-07 Score=81.44 Aligned_cols=127 Identities=11% Similarity=-0.081 Sum_probs=66.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006636 393 ILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEAR 472 (637)
Q Consensus 393 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 472 (637)
.+...+...|++++|...|++.. .|+..+|..+...|...|++++|+..|++..+... .+...+..+..++...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcc
Confidence 34444455555555555555442 34455555555555555555555555555554321 23445555555555555
Q ss_pred ChhHHHHHHHHHHHCC--------------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc
Q 006636 473 QPWRAEEILQIMKAFG--------------VHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 473 ~~~~A~~~~~~m~~~g--------------~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
++++|+..|++..+.. ..|+ ...+..++.++...|++++|...++++....|
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 5555555555554321 1111 23555666666666666666666666665544
No 118
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.71 E-value=2.5e-07 Score=78.68 Aligned_cols=103 Identities=11% Similarity=0.083 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006636 388 AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWG 467 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 467 (637)
...+..+...+.+.|++++|...|+++.+.. |.+...|..+..+|...|++++|+..|+++.+..+. ++..|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 4455666666667777777777777766653 556666777777777777777777777777664322 45566666667
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHH
Q 006636 468 YSEARQPWRAEEILQIMKAFGVHPQKS 494 (637)
Q Consensus 468 ~~~~g~~~~A~~~~~~m~~~g~~p~~~ 494 (637)
|...|++++|+..|++..+ +.|+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 7777777777777766665 345543
No 119
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.71 E-value=2.7e-07 Score=89.65 Aligned_cols=155 Identities=10% Similarity=0.026 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHcCCHhhHHHHHHHHhhCCC---CC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-----CHH
Q 006636 320 IFNLLIKGFVEIMDRDGVDEVLALMKEFRV---NP--DVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKP-----DAH 389 (637)
Q Consensus 320 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~ 389 (637)
+|+.+...|...|++++|...+++..+... .+ -..++..+...|.. |++++|+..|++........ ...
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 455555566666666666666665433210 11 13456677777777 88888888888876531111 146
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----H--
Q 006636 390 AYSILAKGYVREQEPEKAEELLMTMIES----GFHPN-VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPN----L-- 458 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~-- 458 (637)
++..+...|.+.|++++|+..|++..+. +..+. ...+..++.++...|++++|+..|++.. .. |+ .
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~--p~~~~~~e~ 233 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SI--PGFSGSEDC 233 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TS--TTSTTSHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CC--CCCCCCHHH
Confidence 7888899999999999999999988763 11111 2366677778888899999999999988 42 32 1
Q ss_pred HHHHHHHHHHHhcCChhHHHH
Q 006636 459 KTFETLMWGYSEARQPWRAEE 479 (637)
Q Consensus 459 ~~~~~l~~~~~~~g~~~~A~~ 479 (637)
.....++.++ ..|+.+...+
T Consensus 234 ~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 234 AALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHH-HhcCHHHHHH
Confidence 1344455544 4566554444
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.67 E-value=4.7e-07 Score=74.57 Aligned_cols=100 Identities=11% Similarity=0.080 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006636 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGY 468 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 468 (637)
..+......|.+.|++++|++.|++.++.. +.+..+|..+..+|...|++++|+..|++.++.+. .+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHH
Confidence 345555666666666666666666666553 45566666666666666666666666666666432 2455666666666
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCC
Q 006636 469 SEARQPWRAEEILQIMKAFGVHPQ 492 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~~g~~p~ 492 (637)
...|++++|++.|++..+ +.|+
T Consensus 92 ~~~~~~~~A~~~~~~al~--l~P~ 113 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ--VDPS 113 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTT
T ss_pred HHCCCHHHHHHHHHHHHH--HCcC
Confidence 666666666666666655 3444
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.66 E-value=7.6e-06 Score=78.66 Aligned_cols=165 Identities=9% Similarity=-0.019 Sum_probs=124.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHH
Q 006636 358 TIMNAWSTAGFMDKCKEIFDDMGKAGI-KPD----AHAYSILAKGYVREQEPEKAEELLMTMIESGF-HPN----VVIFT 427 (637)
Q Consensus 358 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~ 427 (637)
..+..+...|++++|..+++...+... .|+ ...+..+...+...+++++|+..|+++.+... .++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677889999999999999887421 122 11334567777788899999999999987422 223 34689
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-HHHH
Q 006636 428 TIISGWCSDGSMDRAIEVFDKMCE----H-GVSPNL-KTFETLMWGYSEARQPWRAEEILQIMKA----FGVHPQ-KSTF 496 (637)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~ 496 (637)
.++..|...|++++|+..|+++.+ . +..+.. .++..++..|...|++++|+.++++..+ .+..+. ...|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999999884 1 222222 3688899999999999999999988753 333334 5688
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHhhh
Q 006636 497 LLLAEARRATGL-TKEAKRILSKIKNK 522 (637)
Q Consensus 497 ~~l~~~~~~~g~-~~eA~~~~~~~~~~ 522 (637)
..++.++.+.|+ +++|.+.++++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 899999999995 69999999988644
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.61 E-value=3.9e-06 Score=76.21 Aligned_cols=126 Identities=15% Similarity=0.043 Sum_probs=76.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 006636 146 NAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCN 225 (637)
Q Consensus 146 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 225 (637)
..+...+...|++++|...|++.. .|+..+|..+...|...|++++|+..|++..... +.+...|..+..++..
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHH
Confidence 344455556666666666666553 3455666666666666666666666666666543 3455666666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006636 226 EKNITEAWNVMHKMAASGMK--------------P-DVVTYNTIATAYAQNGEADQAEEVIVEMEHN 277 (637)
Q Consensus 226 ~g~~~~A~~~~~~~~~~g~~--------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 277 (637)
.|++++|+..|++..+.... | ....+..+..+|...|++++|...|++..+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 66666666666666653211 0 1245566666666777777777777666654
No 123
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.61 E-value=1.2e-06 Score=81.67 Aligned_cols=192 Identities=8% Similarity=-0.066 Sum_probs=110.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHHcCCHhhHHHHHHHHhhC------------CC------
Q 006636 295 KEGKIKEALRFARTMKEYGVHPNLVIFNLL-------IKGFVEIMDRDGVDEVLALMKEF------------RV------ 349 (637)
Q Consensus 295 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~------------~~------ 349 (637)
..++...|.+.|.++.... +.....|..+ ...+...++..++...+..-... |.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4677777777777776654 4455666666 34444444444444444333321 10
Q ss_pred --CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHH
Q 006636 350 --NPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPN--VVI 425 (637)
Q Consensus 350 --~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~ 425 (637)
..-..........+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 0002233445556667777777777777766543 333355556666777777777777776554321 110 235
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 006636 426 FTTIISGWCSDGSMDRAIEVFDKMCEHGVSPN--LKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ 492 (637)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 492 (637)
+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++.. ..|+
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~ 240 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPE 240 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc
Confidence 66667777777777777777777764322143 23455566667777777777777777765 4455
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.60 E-value=1.7e-06 Score=71.22 Aligned_cols=93 Identities=11% Similarity=0.037 Sum_probs=35.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006636 75 MTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE 154 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 154 (637)
+..+...|.+.|++++|++.|++.++.. +.++.+|..+..++...|++++|+..+++.++.+ +.+...|..+..+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 3333344444444444444444433321 1233333333333334444444444443333332 2233333333333333
Q ss_pred cCCHHHHHHHHHHHH
Q 006636 155 SGNMEEAMDTFWKMK 169 (637)
Q Consensus 155 ~g~~~~A~~~~~~m~ 169 (637)
.|++++|+..|++..
T Consensus 94 ~~~~~~A~~~~~~al 108 (126)
T 4gco_A 94 MREWSKAQRAYEDAL 108 (126)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 333333333333333
No 125
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.60 E-value=3.3e-05 Score=74.58 Aligned_cols=190 Identities=8% Similarity=0.017 Sum_probs=115.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006636 111 TTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESG-NMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI 189 (637)
Q Consensus 111 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 189 (637)
+.+..........++|+.++++++..+ +.+..+|+.--..+...| .+++++..++.+....++ +..+|+.-...+..
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 333333334445568888888888876 666777888777777777 488888888888887655 77778777777766
Q ss_pred c-C-ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006636 190 A-G-KPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQA 267 (637)
Q Consensus 190 ~-g-~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 267 (637)
. + ++++++++++++.... +.|..+|+--.-.+.+.+.++. .+. ..+.++
T Consensus 136 l~~~~~~~EL~~~~k~L~~d--pkNy~AW~~R~wvl~~l~~~~~--------------~~~-------------~~~~eE 186 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPD--PKNYHTWAYLHWLYSHFSTLGR--------------ISE-------------AQWGSE 186 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSC--TTCHHHHHHHHHHHHHHHHTTC--------------CCH-------------HHHHHH
T ss_pred hcCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccccc--------------cch-------------hhHHHH
Confidence 6 6 7788888888887764 5677777765555444443330 000 001244
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006636 268 EEVIVEMEHNGVQPNGRTCGIIISGYCKEGK-------IKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMD 333 (637)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 333 (637)
++.++++.+..+ .|...|+.....+.+.+. ++++++.+++++... +-|...|+-+-..+.+.|.
T Consensus 187 Le~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 187 LDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 444444444332 244444444444444433 566677776666553 4566666665555554443
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.59 E-value=2.1e-06 Score=74.32 Aligned_cols=130 Identities=11% Similarity=0.018 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006636 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGY 468 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 468 (637)
..+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|+..|++..+... .+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 455666677777777777777777776653 45677777777777777788888887777776532 2566777777777
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCC-HHHH--HHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006636 469 SEARQPWRAEEILQIMKAFGVHPQ-KSTF--LLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~--~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
...|++++|...|+++.+. .|+ ...+ ...+..+...|++++|...+.+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 7788888888888777652 232 3333 33444466778888888888777554
No 127
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.59 E-value=6.9e-06 Score=78.97 Aligned_cols=127 Identities=10% Similarity=0.037 Sum_probs=68.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 006636 184 IKGYGIAGKPEESVKLLDLMSREGNVKPNL----RTYNVLVRAWCNEKNITEAWNVMHKMAASGMK-PD----VVTYNTI 254 (637)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~~----~~~~~~l 254 (637)
+..+...|++++|..++++........|+. ..+..+...+...+++++|+..|+++...... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 455566667777777766665532111221 12223445555556666666666666653211 11 2246666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh----C-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006636 255 ATAYAQNGEADQAEEVIVEMEH----N-GVQP-NGRTCGIIISGYCKEGKIKEALRFARTMK 310 (637)
Q Consensus 255 i~~~~~~g~~~~A~~~~~~~~~----~-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 310 (637)
...|...|++++|...|+++.+ . +..+ ...++..+...|.+.|++++|+..+++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 6666666666666666666552 1 1111 12345556666666666666666666554
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.59 E-value=2.2e-06 Score=69.89 Aligned_cols=96 Identities=21% Similarity=0.220 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006636 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGY 468 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 468 (637)
..+..+...+...|++++|..+++++.+.. +.+..++..+...+...|++++|+.+|+++.+... .+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHH
Confidence 344444444445555555555555444432 33444444445555555555555555555444321 2344444445555
Q ss_pred HhcCChhHHHHHHHHHHH
Q 006636 469 SEARQPWRAEEILQIMKA 486 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~ 486 (637)
...|++++|...++++.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 555555555555554443
No 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.59 E-value=2.7e-06 Score=73.66 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=9.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHH
Q 006636 76 TKLMNSLIERGKPQEAQAIFNNLI 99 (637)
Q Consensus 76 ~~l~~~~~~~g~~~~A~~~~~~~~ 99 (637)
..+...+...|++++|+..|++..
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al 40 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAI 40 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH
Confidence 333333333444444444443333
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.57 E-value=2.7e-06 Score=69.32 Aligned_cols=98 Identities=17% Similarity=0.194 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006636 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA 151 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 151 (637)
...|..+...+...|++++|++.|+++.... +.+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3445555555555666666666665555432 2244455555555555555555555555555443 3344445555555
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 006636 152 FSESGNMEEAMDTFWKMKES 171 (637)
Q Consensus 152 ~~~~g~~~~A~~~~~~m~~~ 171 (637)
|...|++++|...|+++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 55555555555555554443
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.57 E-value=3.8e-06 Score=80.83 Aligned_cols=167 Identities=8% Similarity=-0.017 Sum_probs=115.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--HHH
Q 006636 356 YSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD-----AHAYSILAKGYVREQEPEKAEELLMTMIESGF---HPN--VVI 425 (637)
Q Consensus 356 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~~ 425 (637)
+...+..+...|++++|...+....+...... ...+..+...+...|++++|...+++..+... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34455666777888888887777666432111 12234455667778889999998888875321 112 457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-HH
Q 006636 426 FTTIISGWCSDGSMDRAIEVFDKMCEH-GVSPN-----LKTFETLMWGYSEARQPWRAEEILQIMKA----FGVHPQ-KS 494 (637)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~ 494 (637)
|+.++..|...|++++|+..|+++.+. ...|+ ..++..++.+|...|++++|+.++++..+ .+.... ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 888888999999999999999888731 01122 14788888899999999999999988753 122222 55
Q ss_pred HHHHHHHHHHHcCCHHHH-HHHHHHHhhh
Q 006636 495 TFLLLAEARRATGLTKEA-KRILSKIKNK 522 (637)
Q Consensus 495 ~~~~l~~~~~~~g~~~eA-~~~~~~~~~~ 522 (637)
.|..++.++.+.|+.++| ...++++...
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 788889999999999999 7778877544
No 132
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.56 E-value=2.4e-07 Score=78.90 Aligned_cols=97 Identities=13% Similarity=0.010 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006636 388 AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWG 467 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 467 (637)
...+..+...+.+.|++++|...|+++.... +.+...|..+..+|...|++++|+..|+++.+... .+...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHH
Confidence 3444445555555566666666665555543 44555555555555555666666666655555322 134455555555
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 006636 468 YSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 468 ~~~~g~~~~A~~~~~~m~~ 486 (637)
+...|++++|...|++..+
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555543
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.56 E-value=8.6e-06 Score=78.27 Aligned_cols=165 Identities=8% Similarity=-0.073 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCH-----HHHHHHHHHHHHcCChhHHHHHHHHHHHCCC---CCC--HH
Q 006636 320 IFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDV-----ITYSTIMNAWSTAGFMDKCKEIFDDMGKAGI---KPD--AH 389 (637)
Q Consensus 320 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~~ 389 (637)
.+...+..+...|++++|.+.+....+.....+. ..+..+...+...|++++|+..+.+..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444555666777777777777766654322111 2233455667788899999999998875321 112 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-
Q 006636 390 AYSILAKGYVREQEPEKAEELLMTMIE---SGFHPN----VVIFTTIISGWCSDGSMDRAIEVFDKMCEH----GVSPN- 457 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~- 457 (637)
+++.+...|...|++++|...|+++.+ .. +.+ ..++..++..|...|++++|+..+++..+. +....
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~-~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 888999999999999999999998873 21 222 258889999999999999999999998753 11111
Q ss_pred HHHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 006636 458 LKTFETLMWGYSEARQPWRA-EEILQIMK 485 (637)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 485 (637)
..+|..+..+|...|+.++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 56788999999999999999 77777764
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.56 E-value=5.4e-07 Score=79.38 Aligned_cols=119 Identities=9% Similarity=0.087 Sum_probs=65.8
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 006636 365 TAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISG-WCSDGSM--DR 441 (637)
Q Consensus 365 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~~ 441 (637)
..|++++|...++...+.. +.+...+..+...|...|++++|...|+++.+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3455556666665555442 3345566666666666666666666666665543 3455555555555 5556665 66
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006636 442 AIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 442 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
|+..|+++.+... .+...+..+...+...|++++|...|+++.+
T Consensus 100 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 6666666665432 1344555566666666666666666666554
No 135
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.55 E-value=7.2e-07 Score=80.39 Aligned_cols=158 Identities=11% Similarity=-0.064 Sum_probs=105.4
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCC
Q 006636 364 STAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIES----GF-HPNVVIFTTIISGWCSDGS 438 (637)
Q Consensus 364 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~ 438 (637)
...|++++|.++++.+.. .......++..+...|...|++++|...+++..+. +. +....++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 346777777775544433 12234667777788888888888888888877651 11 1234567778888888888
Q ss_pred HHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHcC
Q 006636 439 MDRAIEVFDKMCEH----GVSP--NLKTFETLMWGYSEARQPWRAEEILQIMKA----FGVHPQ-KSTFLLLAEARRATG 507 (637)
Q Consensus 439 ~~~A~~~~~~m~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~l~~~~~~~g 507 (637)
+++|...+++..+. +-.| ....+..+...+...|++++|...+++..+ .+..+. ...+..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888888887653 1111 123577778888888999999888887753 121111 224577888899999
Q ss_pred CHHHHHHHHHHHhhh
Q 006636 508 LTKEAKRILSKIKNK 522 (637)
Q Consensus 508 ~~~eA~~~~~~~~~~ 522 (637)
++++|.+.+++....
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999888655
No 136
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.55 E-value=1.4e-06 Score=74.09 Aligned_cols=104 Identities=13% Similarity=0.042 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006636 352 DVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIIS 431 (637)
Q Consensus 352 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 431 (637)
+...+..+...+.+.|++++|+..|+.+.... +.+...|..+..+|...|++++|+..|++..+.. |.++..|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 34567777788888999999999999888764 4578888889999999999999999999988874 567788889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006636 432 GWCSDGSMDRAIEVFDKMCEHGVSPNLK 459 (637)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 459 (637)
+|...|++++|+..|+++.+. .|+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 999999999999999998884 36654
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.54 E-value=2.6e-06 Score=70.47 Aligned_cols=122 Identities=11% Similarity=0.012 Sum_probs=94.1
Q ss_pred ccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006636 67 ESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
..+.++..|..+...+.+.|++++|+..|++..+.. +.+..++..+..++...|++++|...++++.+.. +.+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 88 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYT 88 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHH
Confidence 345667888888999999999999999999988753 3467788888888888889999998888888765 55677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006636 147 AVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAG 191 (637)
Q Consensus 147 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 191 (637)
.+...+...|++++|...|++..+..+. +...+..+..++...|
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 8888888888888888888887765432 4456666666665544
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.53 E-value=3.8e-06 Score=78.40 Aligned_cols=130 Identities=8% Similarity=-0.013 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 006636 179 TYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPD--VVTYNTIAT 256 (637)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~ 256 (637)
.+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~---p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAG---SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTT---CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHH
Confidence 34445666677777777777777766543 433355556667777777777777776554321 111 235566777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006636 257 AYAQNGEADQAEEVIVEMEHNGVQPN--GRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 257 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 77777888888887777764332132 235556667777778888888888777765
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.52 E-value=7.6e-07 Score=85.09 Aligned_cols=97 Identities=10% Similarity=0.009 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 006636 142 SIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVR 221 (637)
Q Consensus 142 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 221 (637)
...+..+...+.+.|++++|+..|++..+..+. +...|..+...|.+.|++++|+..+++..+.. +.+...+..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 344455555555566666666666555554322 45555556666666666666666666655542 344555566666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 006636 222 AWCNEKNITEAWNVMHKMAA 241 (637)
Q Consensus 222 ~~~~~g~~~~A~~~~~~~~~ 241 (637)
++...|++++|+..|++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666655544
No 140
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.51 E-value=2.1e-06 Score=70.75 Aligned_cols=105 Identities=12% Similarity=0.115 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHH
Q 006636 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHG--VSPN----LKTFE 462 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~----~~~~~ 462 (637)
..+..+...+.+.|++++|+..|++.++.. |.+..+|..+..+|...|++++|+..|++.++.. ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345566667777777777777777776653 4556677777777777777777777777766531 1111 12455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006636 463 TLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTF 496 (637)
Q Consensus 463 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 496 (637)
.+..++...|++++|++.|++..+ ..|+.+..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~ 119 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELV 119 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHH
Confidence 566666677777777777766654 34555443
No 141
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.50 E-value=3.8e-06 Score=69.08 Aligned_cols=120 Identities=13% Similarity=-0.008 Sum_probs=76.5
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006636 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVI 149 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 149 (637)
.+...+..+...+...|++++|+..|++..... +.+...+..+..++...|++++|...+.+..+.. +.+...+..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 87 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHH
Confidence 345566666777777777777777777776532 3356666666667777777777777777766653 44566666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006636 150 NAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGK 192 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 192 (637)
..+...|++++|...|++..+..+. +...+..+..++...|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 6666667777777766666655332 45556666666655554
No 142
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.50 E-value=4.4e-06 Score=68.70 Aligned_cols=115 Identities=13% Similarity=0.062 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006636 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYS 469 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 469 (637)
.+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|+..+++..+... .+...+..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHHHH
Confidence 34444444444444555544444444432 23444444444444455555555555544444321 12334444444455
Q ss_pred hcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCC
Q 006636 470 EARQPWRAEEILQIMKAFGVHP-QKSTFLLLAEARRATGL 508 (637)
Q Consensus 470 ~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~ 508 (637)
..|++++|...|++..+. .| +...+..+..++.+.|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhc
Confidence 555555555555444431 22 23334444444444443
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.49 E-value=1.4e-06 Score=78.36 Aligned_cols=157 Identities=13% Similarity=0.046 Sum_probs=91.4
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCC
Q 006636 83 IERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEEN----GM-DPDSIFFNAVINAFSESGN 157 (637)
Q Consensus 83 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~g~ 157 (637)
...|++++|.+.++.+.. .......++..+...+...|++++|...+++..+. +. +....++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 457888888885555543 22235667777778888888888888888877652 11 1123456667777777777
Q ss_pred HHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcC
Q 006636 158 MEEAMDTFWKMKES----GLTP--TTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPN----LRTYNVLVRAWCNEK 227 (637)
Q Consensus 158 ~~~A~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g 227 (637)
+++|...+++..+. +-.+ ...++..+...+...|++++|...+++.........+ ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777777765542 1011 1334566666777777777777777665432100111 123455555666666
Q ss_pred CHHHHHHHHHHHH
Q 006636 228 NITEAWNVMHKMA 240 (637)
Q Consensus 228 ~~~~A~~~~~~~~ 240 (637)
++++|...+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666666665544
No 144
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.49 E-value=4.9e-05 Score=73.09 Aligned_cols=153 Identities=8% Similarity=-0.009 Sum_probs=84.4
Q ss_pred hhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHH
Q 006636 335 DGVDEVLALMKEFRVNPDVITYSTIMNAWSTAG--FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQE-PEKAEELL 411 (637)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~ 411 (637)
+++..++..+....+ .+..+|+.-...+...+ .+++++.++..+.+.. +.|..+|+--...+...|. ++++++.+
T Consensus 91 ~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 344444444444332 24455554444444444 2556666666665543 3355555555555555555 46666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc------
Q 006636 412 MTMIESGFHPNVVIFTTIISGWCSD--------------GSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEA------ 471 (637)
Q Consensus 412 ~~~~~~~~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~------ 471 (637)
.++++.. +.|...|+.....+... +.++++++.+++++...+. |...|+.+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCcccc
Confidence 6666554 45666666555544443 3466777777777664432 555565554444443
Q ss_pred -----CChhHHHHHHHHHHHCCCCCCH
Q 006636 472 -----RQPWRAEEILQIMKAFGVHPQK 493 (637)
Q Consensus 472 -----g~~~~A~~~~~~m~~~g~~p~~ 493 (637)
+.++++++.++++.+ +.|+.
T Consensus 247 ~~~~~~~l~~el~~~~elle--~~pd~ 271 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQE--LEPEN 271 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred chHHHHHHHHHHHHHHHHHh--hCccc
Confidence 346677777777776 55664
No 145
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.49 E-value=3.4e-06 Score=69.26 Aligned_cols=96 Identities=14% Similarity=0.088 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006636 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGY 468 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 468 (637)
..+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|++..+.... +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 345555666666666666666666666553 445666666666666666666666666666654321 345566666666
Q ss_pred HhcCChhHHHHHHHHHHH
Q 006636 469 SEARQPWRAEEILQIMKA 486 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~ 486 (637)
...|++++|...|++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 666666666666666544
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.48 E-value=2.1e-06 Score=75.51 Aligned_cols=121 Identities=7% Similarity=0.057 Sum_probs=72.6
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--H
Q 006636 83 IERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA-FSESGNM--E 159 (637)
Q Consensus 83 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~--~ 159 (637)
...|++++|+..|++..... +.+...|..+..++...|++++|...|+++.+.. +.+...+..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 46677777777777766542 3356667777777777777777777777766654 4455556666655 5566665 6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 006636 160 EAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 160 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (637)
+|...|++..+..+. +...+..+...|...|++++|...|++....
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666666666655332 4555566666666666666666666666554
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.48 E-value=3.2e-06 Score=69.95 Aligned_cols=97 Identities=4% Similarity=-0.015 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006636 107 LVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKG 186 (637)
Q Consensus 107 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 186 (637)
...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|+..|++..+..+. +...+..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 3444455555555555555555555555432 334444555555555555555555555554443221 34444444444
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 006636 187 YGIAGKPEESVKLLDLMSR 205 (637)
Q Consensus 187 ~~~~g~~~~A~~~~~~m~~ 205 (637)
|...|++++|.+.|++...
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555544444
No 148
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.47 E-value=8.4e-07 Score=84.77 Aligned_cols=97 Identities=7% Similarity=-0.005 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006636 107 LVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKG 186 (637)
Q Consensus 107 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 186 (637)
...+..+...+...|++++|...|+++++.. +.+...+..+...|.+.|++++|...+++..+..+. +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3344444555555555555555555555443 334555555555555555555555555555554322 44555555555
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 006636 187 YGIAGKPEESVKLLDLMSR 205 (637)
Q Consensus 187 ~~~~g~~~~A~~~~~~m~~ 205 (637)
|...|++++|+..|.+...
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5566666666655555544
No 149
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.47 E-value=0.00018 Score=69.09 Aligned_cols=182 Identities=6% Similarity=0.001 Sum_probs=119.4
Q ss_pred hhHHHHHHHHH---HHcCChh-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHCC
Q 006636 72 VRSMTKLMNSL---IERGKPQ-EAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKR----------FNSIHSIMSQVEENG 137 (637)
Q Consensus 72 ~~~~~~l~~~~---~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~ 137 (637)
+..|..+.+.+ .+.|.+. +|+.+++.++..+ +-+..+|+.--..+...+. +++++..++.++...
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 44454444433 3566665 7899999888743 2356667766555544333 567777777777765
Q ss_pred CCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhcCCCCCCHH
Q 006636 138 MDPDSIFFNAVINAFSESG--NMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGK-PEESVKLLDLMSREGNVKPNLR 214 (637)
Q Consensus 138 ~~~~~~~~~~ll~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~ 214 (637)
+-+..+|+.-...+.+.+ .+++++.+++++.+..+. |..+|+.-.-++...|. ++++++.++++.+.. +.|..
T Consensus 105 -PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~S 180 (331)
T 3dss_A 105 -PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYS 180 (331)
T ss_dssp -TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHH
T ss_pred -CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHH
Confidence 667777877777777777 378888888888877654 77777777777777777 478888888887764 56777
Q ss_pred HHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006636 215 TYNVLVRAWCNE--------------KNITEAWNVMHKMAASGMKPDVVTYNTIATAYA 259 (637)
Q Consensus 215 ~~~~li~~~~~~--------------g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 259 (637)
+|+.....+.+. +.++++++.+....... +-|...|+.+-..+.
T Consensus 181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLG 238 (331)
T ss_dssp HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 777766665544 34666777776666553 335556654443333
No 150
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.44 E-value=1.4e-06 Score=74.03 Aligned_cols=95 Identities=13% Similarity=0.020 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006636 109 TYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYG 188 (637)
Q Consensus 109 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 188 (637)
.+..+...+...|++++|...|++++... +.+...|..+..+|...|++++|+..|++.....+. +...+..+..+|.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence 33334444444444444444444444433 334444444444444444444444444444443322 3344444444444
Q ss_pred hcCChHHHHHHHHHHHh
Q 006636 189 IAGKPEESVKLLDLMSR 205 (637)
Q Consensus 189 ~~g~~~~A~~~~~~m~~ 205 (637)
..|++++|+..|++..+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44555555444444443
No 151
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.43 E-value=5.4e-06 Score=81.40 Aligned_cols=131 Identities=13% Similarity=0.013 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006636 388 AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPN---------------VVIFTTIISGWCSDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (637)
...+..+...|.+.|++++|+..|++..+.. +.+ ..+|..+..+|.+.|++++|+..|+++++.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4455555555555566666666655555542 222 467777777778888888888888877775
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHH-HHHHHHHhhh
Q 006636 453 GVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEA-KRILSKIKNK 522 (637)
Q Consensus 453 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA-~~~~~~~~~~ 522 (637)
.. .+...+..+..+|...|++++|+..|+++.+ +.|+ ...+..+..++.+.|+.++| ..++++|..+
T Consensus 226 ~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 226 DS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 42 2566777777788888888888888877766 3444 45677777778888888777 4466666544
No 152
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.43 E-value=5.1e-06 Score=81.57 Aligned_cols=87 Identities=7% Similarity=-0.144 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 006636 143 IFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRA 222 (637)
Q Consensus 143 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 222 (637)
..+..+..+|.+.|++++|+..|++..+..+. +...|..+..+|...|++++|+..|++..+.. |.+...+..+..+
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 44555555555555555555555555554322 44555555555555555555555555555543 3345555555555
Q ss_pred HHhcCCHHHH
Q 006636 223 WCNEKNITEA 232 (637)
Q Consensus 223 ~~~~g~~~~A 232 (637)
+.+.|+.++|
T Consensus 274 ~~~~~~~~~a 283 (336)
T 1p5q_A 274 QQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555555
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.38 E-value=2.9e-06 Score=71.49 Aligned_cols=94 Identities=10% Similarity=-0.041 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006636 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYS 469 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 469 (637)
.+..+...+.+.|++++|...|+++.... +.+...|..+..+|...|++++|+..|+++.+... .+...+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHH
Confidence 33444445555555555555555555442 34455555555555555555555555555554332 13344455555555
Q ss_pred hcCChhHHHHHHHHHH
Q 006636 470 EARQPWRAEEILQIMK 485 (637)
Q Consensus 470 ~~g~~~~A~~~~~~m~ 485 (637)
..|++++|...|+...
T Consensus 98 ~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 98 QLGDLDGAESGFYSAR 113 (142)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5555555555555544
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.37 E-value=9.9e-06 Score=66.42 Aligned_cols=98 Identities=15% Similarity=0.039 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006636 353 VITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISG 432 (637)
Q Consensus 353 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 432 (637)
...+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456667777888888899988888887764 4467888888888999999999999999888864 5678888888889
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 006636 433 WCSDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~ 452 (637)
+...|++++|+..|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999888874
No 155
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.35 E-value=4.6e-06 Score=68.60 Aligned_cols=109 Identities=14% Similarity=0.100 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 006636 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGV--SPN----LKTFE 462 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~~~~ 462 (637)
..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|+..|+++.+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345556666666666666666666666543 44566666666666666667776666666655321 112 44566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006636 463 TLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLA 500 (637)
Q Consensus 463 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 500 (637)
.+..++...|++++|...|+++.+ ..|+......+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~ 119 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 666666667777777777666655 334444443333
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.35 E-value=1.7e-05 Score=63.69 Aligned_cols=96 Identities=10% Similarity=-0.017 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006636 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGY 468 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 468 (637)
..+..++..+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+... .+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 345555555666666666666666655542 34555566666666666666666666666655432 1445555666666
Q ss_pred HhcCChhHHHHHHHHHHH
Q 006636 469 SEARQPWRAEEILQIMKA 486 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~ 486 (637)
...|++++|...+++..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 666666666666666554
No 157
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.34 E-value=1.9e-05 Score=65.76 Aligned_cols=97 Identities=13% Similarity=-0.053 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006636 387 DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMW 466 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 466 (637)
+...+..+...+...|++++|...|++..+.. +.+...|..+..++...|++++|+..|++..+.... +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 44555555555556666666666666555543 344555555555566666666666666655553321 3445555555
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 006636 467 GYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 467 ~~~~~g~~~~A~~~~~~m~ 485 (637)
++...|++++|+..|++..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 5556666666665555554
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.33 E-value=2.5e-05 Score=62.69 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=8.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHH
Q 006636 77 KLMNSLIERGKPQEAQAIFNNL 98 (637)
Q Consensus 77 ~l~~~~~~~g~~~~A~~~~~~~ 98 (637)
.+...+...|++++|+..|++.
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~ 30 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEA 30 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHH
Confidence 3333333334444444433333
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.30 E-value=1.4e-05 Score=69.11 Aligned_cols=98 Identities=12% Similarity=0.083 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006636 387 DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMW 466 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 466 (637)
+...+..+...|.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|+..|+++++.... +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34556666667777777777777777766653 446667777777777777777777777777664322 4556666777
Q ss_pred HHHhcCChhHHHHHHHHHHH
Q 006636 467 GYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 467 ~~~~~g~~~~A~~~~~~m~~ 486 (637)
++...|++++|+..|++..+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 77777777777777776654
No 160
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.30 E-value=6.4e-06 Score=67.10 Aligned_cols=92 Identities=7% Similarity=-0.049 Sum_probs=51.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006636 393 ILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEAR 472 (637)
Q Consensus 393 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 472 (637)
.+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+.... +...+..+..++...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 34445555566666666666655543 345555555555666666666666666665553321 3445555555555666
Q ss_pred ChhHHHHHHHHHHH
Q 006636 473 QPWRAEEILQIMKA 486 (637)
Q Consensus 473 ~~~~A~~~~~~m~~ 486 (637)
++++|+..+++..+
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666555543
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.26 E-value=2e-05 Score=68.13 Aligned_cols=100 Identities=10% Similarity=0.018 Sum_probs=54.7
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006636 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVI 149 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 149 (637)
.+...|..+...+.+.|++++|+..|++.++.. +.+...|..+..++...|++++|+..|+++++.. +.+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 345555555666666666666666666655532 2245555555555555555555555555555543 33455555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 006636 150 NAFSESGNMEEAMDTFWKMKES 171 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~~ 171 (637)
.+|...|++++|...|++..+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 5555555555555555555443
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.25 E-value=1.2e-05 Score=66.10 Aligned_cols=111 Identities=14% Similarity=0.143 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 006636 354 ITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGF--HPN----VVIFT 427 (637)
Q Consensus 354 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~ 427 (637)
..+..+...+...|++++|...++...+.. +.+..++..+...|...|++++|...++++.+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456667777788888888888888877653 44677788888888888888888888888776421 122 66788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006636 428 TIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWG 467 (637)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 467 (637)
.+..++...|++++|...|+++.+. .|+......+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 8888888888999999988888874 3566555555443
No 163
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.25 E-value=2.4e-05 Score=70.08 Aligned_cols=121 Identities=12% Similarity=0.062 Sum_probs=61.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 006636 356 YSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD---------------AHAYSILAKGYVREQEPEKAEELLMTMIESGFH 420 (637)
Q Consensus 356 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 420 (637)
+..+...+...|++++|...|++..+...... ..++..+..+|.+.|++++|+..+++..+.. +
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p 119 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-K 119 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-c
Confidence 34444445555555555555555554321100 1455555556666666666666666655542 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006636 421 PNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAE 478 (637)
Q Consensus 421 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 478 (637)
.+...+..+..+|...|++++|+..|++..+... -+...+..+..++...++.+++.
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC--
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666666666666655321 13444555555554444444443
No 164
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.23 E-value=2.7e-05 Score=64.00 Aligned_cols=58 Identities=16% Similarity=0.191 Sum_probs=22.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006636 75 MTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQV 133 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 133 (637)
+..|...+.+.|++++|+..|++.++.. +.+..+|..+..+|...|++++|+..+++.
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 3334444444444444444444443321 113333333444444444444444444333
No 165
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.23 E-value=2.4e-05 Score=70.06 Aligned_cols=98 Identities=13% Similarity=0.074 Sum_probs=51.3
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006636 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSL----------------VTYTTLLAALTIQKRFNSIHSIMSQVE 134 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~~~ 134 (637)
....+..+...+.+.|++++|+..|++.+..... +. .++..+..++...|++++|...+++++
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4455666677777778888888888777763211 11 344444444444444444444444444
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006636 135 ENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKE 170 (637)
Q Consensus 135 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 170 (637)
+.. +.+...+..+..+|...|++++|...|++..+
T Consensus 116 ~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 116 KID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 432 33344444444444444444444444444443
No 166
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.22 E-value=2.2e-05 Score=66.03 Aligned_cols=97 Identities=15% Similarity=0.085 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006636 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA 151 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 151 (637)
...+..+...+.+.|++++|+..|+++...+ +.+...|..+..++...|++++|...|+++++.. +.+...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 3334444444444555555555554444421 2234444444444444444444444444444433 3333444444444
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 006636 152 FSESGNMEEAMDTFWKMKE 170 (637)
Q Consensus 152 ~~~~g~~~~A~~~~~~m~~ 170 (637)
|...|++++|...|++..+
T Consensus 96 ~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444433
No 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.21 E-value=1.3e-05 Score=63.75 Aligned_cols=93 Identities=9% Similarity=-0.023 Sum_probs=41.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHH
Q 006636 391 YSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSP--NLKTFETLMWGY 468 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~ 468 (637)
+..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|+..|+++.+.. +. +...+..+..++
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 3344444444444555544444444432 3334444444444444444444444444444431 11 233444444444
Q ss_pred Hhc-CChhHHHHHHHHHH
Q 006636 469 SEA-RQPWRAEEILQIMK 485 (637)
Q Consensus 469 ~~~-g~~~~A~~~~~~m~ 485 (637)
... |++++|.+.++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp TTCSSCSHHHHHHHHHHG
T ss_pred HHHhCCHHHHHHHHHHHh
Confidence 444 44444444444443
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.21 E-value=3.6e-05 Score=63.93 Aligned_cols=100 Identities=16% Similarity=0.043 Sum_probs=83.9
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006636 351 PDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTII 430 (637)
Q Consensus 351 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 430 (637)
.+...+..+...+...|++++|...|....... +.+...+..+...|...|++++|...+++..+.. +.+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 467778888888888999999999998887764 4467888888899999999999999999988864 56788888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 006636 431 SGWCSDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~ 452 (637)
.+|...|++++|+..|+++.+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999988763
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=4.5e-05 Score=64.21 Aligned_cols=112 Identities=14% Similarity=0.097 Sum_probs=84.1
Q ss_pred CcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 006636 69 CRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPS----LVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIF 144 (637)
Q Consensus 69 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 144 (637)
..+...+..+...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|...+++..+.. +.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 456777888889999999999999999999874 455 5677777788888888888888888877764 456777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006636 145 FNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLI 184 (637)
Q Consensus 145 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 184 (637)
+..+..+|...|++++|...|++..+..+. +...+..+.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 140 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHH
Confidence 777778888888888888888887765422 344444333
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=5.9e-05 Score=63.45 Aligned_cols=96 Identities=15% Similarity=0.032 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006636 353 VITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD----AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTT 428 (637)
Q Consensus 353 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 428 (637)
...+..+...+...|++++|...|++..+. .|+ ...+..+...|...|++++|...+++..+.. +.+...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 344444444555555555555555555443 222 3444444555555555555555555544432 334444455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 006636 429 IISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
+..++...|++++|...|++..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555555544
No 171
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.19 E-value=1.6e-05 Score=63.14 Aligned_cols=96 Identities=15% Similarity=0.003 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 006636 74 SMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDP--DSIFFNAVINA 151 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~ 151 (637)
.|..+...+.+.|++++|+..|++..+.. +.+..++..+..++...|++++|...++++.+.. +. +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 34445555666666666666666655532 2244555555555555566666666555555543 33 44555555555
Q ss_pred HHhc-CCHHHHHHHHHHHHHC
Q 006636 152 FSES-GNMEEAMDTFWKMKES 171 (637)
Q Consensus 152 ~~~~-g~~~~A~~~~~~m~~~ 171 (637)
+... |++++|.+.|++....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 5555 5555555555555544
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.15 E-value=1.9e-05 Score=64.21 Aligned_cols=95 Identities=6% Similarity=-0.011 Sum_probs=76.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006636 356 YSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS 435 (637)
Q Consensus 356 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 435 (637)
+..+...+.+.|++++|+..++..++.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3445567778888888888888888764 4477888888888888899999999888888764 5577788888888888
Q ss_pred cCCHHHHHHHHHHHHHC
Q 006636 436 DGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 436 ~g~~~~A~~~~~~m~~~ 452 (637)
.|++++|+..|+++++.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88999999988888764
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.12 E-value=2.3e-05 Score=67.04 Aligned_cols=134 Identities=13% Similarity=-0.000 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----H
Q 006636 389 HAYSILAKGYVREQEPEKAEELLMTMIESGF-HPN----VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGV-SPN----L 458 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~ 458 (637)
.++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+... .++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 4566677777778888888887777654310 011 13677778888888888888888888764210 012 3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006636 459 KTFETLMWGYSEARQPWRAEEILQIMKA----FGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 459 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
..+..+...+...|++++|...+++..+ .+..+. ...+..+..++...|++++|.+.+++....
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4577778888889999999988887753 221111 235777888899999999999999887644
No 174
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.10 E-value=3.6e-05 Score=66.31 Aligned_cols=96 Identities=14% Similarity=0.090 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC--------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006636 390 AYSILAKGYVREQEPEKAEELLMTMIES--------G---------FHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (637)
.+......+.+.|++++|+..|.+.++. . .+.+...|..+..+|.+.|++++|+..++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4445555566666666666666655542 0 0223345666666666666666666666666654
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006636 453 GVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 453 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
.. .+...|..+..++...|++++|...|++..+
T Consensus 93 ~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 93 EE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 32 2455666666666666666666666666655
No 175
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.08 E-value=5.2e-05 Score=77.79 Aligned_cols=127 Identities=13% Similarity=0.049 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006636 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPN---------------VVIFTTIISGWCSDGSMDRAIEVFDKMCEHG 453 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 453 (637)
..+..+...|.+.|++++|+..|++.++.. +.+ ...|..+..+|.+.|++++|+..|+++++..
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 345555556666666666666666655532 222 5778888888888999999999998888764
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHH-HHHHH
Q 006636 454 VSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS-TFLLLAEARRATGLTKEAKR-ILSKI 519 (637)
Q Consensus 454 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~-~~~~~ 519 (637)
. .+...|..+..+|...|++++|+..|+++.+ +.|+.. .+..+..++.+.|+.++|.+ ++.+|
T Consensus 348 p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 348 S-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred C-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 2667888888889999999999999988876 556543 67778888888888877764 34444
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.08 E-value=8.6e-05 Score=60.83 Aligned_cols=91 Identities=12% Similarity=0.098 Sum_probs=44.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 006636 394 LAKGYVREQEPEKAEELLMTMIESGFHPNV---VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPN---LKTFETLMWG 467 (637)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~ 467 (637)
+...+.+.|++++|...|+++.+.. +.+. ..+..+..++...|++++|+..|+++.+.... + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 3444455555555555555555432 2222 34444555555555555555555555543211 1 3344445555
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 006636 468 YSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 468 ~~~~g~~~~A~~~~~~m~~ 486 (637)
+...|++++|...|+++.+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555543
No 177
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.06 E-value=0.00026 Score=72.01 Aligned_cols=198 Identities=12% Similarity=-0.009 Sum_probs=115.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCh----------------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC
Q 006636 254 IATAYAQNGEADQAEEVIVEMEHNGVQPNG----------------RTCGIIISGYCKEGKIKEALRFARTMKEYG-VHP 316 (637)
Q Consensus 254 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~ 316 (637)
-...+.+.|++++|++.|..+.+....... ..+..++..|.+.|++++|.+.+..+...- ..+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 345677889999999999888875432211 125667788888888888888887765421 011
Q ss_pred CHH----HHHHHHHHHHHcCCHhhHHHHHHHHhh----CCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHC--CCC
Q 006636 317 NLV----IFNLLIKGFVEIMDRDGVDEVLALMKE----FRVNPD-VITYSTIMNAWSTAGFMDKCKEIFDDMGKA--GIK 385 (637)
Q Consensus 317 ~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~ 385 (637)
+.. +.+.+...+...|+++.+..++..... .+..+. ..++..+...|...|++++|..+++.+... +..
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 211 122222233345667777776665432 222222 345566667777777777777777765432 111
Q ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006636 386 ---PDAHAYSILAKGYVREQEPEKAEELLMTMIES--GFHPN----VVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 386 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
....++..++..|...|++++|..++++.... .+..+ ...+..++..+...|++++|...|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11345666667777777777777777665431 11111 23445555566666777777777766655
No 178
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.04 E-value=0.00012 Score=61.44 Aligned_cols=100 Identities=13% Similarity=-0.010 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CH-----HHHHHHHHHHHhcCChhHHHHHHHHHHHC-----C
Q 006636 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVSP------NL-----KTFETLMWGYSEARQPWRAEEILQIMKAF-----G 488 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p------~~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g 488 (637)
.+......+...|++++|+..|++.++..... +. ..|..+..++...|++++|+..+++..+. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34445555666666666666666666532110 22 27777788888888888888888877662 1
Q ss_pred CCCCHH-HH----HHHHHHHHHcCCHHHHHHHHHHHhhhhc
Q 006636 489 VHPQKS-TF----LLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 489 ~~p~~~-~~----~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
+.|+.. .| .....++...|++++|+..+++..+..|
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 277754 67 8888999999999999999988866644
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.04 E-value=0.0003 Score=71.63 Aligned_cols=196 Identities=9% Similarity=-0.024 Sum_probs=97.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCC-C
Q 006636 289 IISGYCKEGKIKEALRFARTMKEYGVHPN----------------LVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVN-P 351 (637)
Q Consensus 289 li~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~ 351 (637)
-...+.+.|++++|++.|..+.+...... ...+..+...|...|++++|.+.+..+...... +
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 35567788888888888888876542111 113455666666666666666666655432111 1
Q ss_pred CHH----HHHHHHHHHHHcCChhHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC-
Q 006636 352 DVI----TYSTIMNAWSTAGFMDKCKEIFDDMGK----AGIKP-DAHAYSILAKGYVREQEPEKAEELLMTMIES--GF- 419 (637)
Q Consensus 352 ~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~- 419 (637)
+.. +.+.+...+...|+.+.+..++..... .+..+ -..++..|+..|...|++++|..+++++... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 111 122222233344556666666555432 11111 1344555566666666666666666555432 10
Q ss_pred -CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC-CC-C--HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006636 420 -HP-NVVIFTTIISGWCSDGSMDRAIEVFDKMCEH--GV-SP-N--LKTFETLMWGYSEARQPWRAEEILQIM 484 (637)
Q Consensus 420 -~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~-~p-~--~~~~~~l~~~~~~~g~~~~A~~~~~~m 484 (637)
.+ ...++..++..|...|++++|..++++.... .+ .| . ...+..++..+...|++++|...|.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 11 1234555555566666666666666555421 11 11 1 123344444455555666655555444
No 180
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.03 E-value=0.00013 Score=76.63 Aligned_cols=189 Identities=7% Similarity=-0.009 Sum_probs=130.4
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006636 367 GFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQE----------PEKAEELLMTMIESGFHPNVVIFTTIISGWCSD 436 (637)
Q Consensus 367 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 436 (637)
..-++|++.++.++... +.+..+|+.-...+.+.|+ ++++++.++++.+.. +.+..+|..-...+.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 34457788888888764 3466777777777766666 899999999998875 77889999999999999
Q ss_pred C--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006636 437 G--SMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEAR-QPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAK 513 (637)
Q Consensus 437 g--~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~ 513 (637)
| +++++++.++++.+...+ |...|..-..++.+.| .++++++.++++.+.... +...|.....++.+.+...++.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccc
Confidence 9 779999999999987654 7888998888888888 888999999888764333 4567777766666542110000
Q ss_pred HHHHHHhhhhccccccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCCch
Q 006636 514 RILSKIKNKERTNEMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSA 570 (637)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~a~~~~e~~~~~~~~~~~y~~~~~L~~~y~~~g~~~~ 570 (637)
.......+..+.+...+.++++.+|++.. ++..+.+++...++.++
T Consensus 199 ---------~~~~~~~~~~~eel~~~~~ai~~~P~~~s--aW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 ---------PQGRLPENVLLKELELVQNAFFTDPNDQS--AWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp ---------SCCSSCHHHHHHHHHHHHHHHHHCSSCSH--HHHHHHHHHSCCCCCSC
T ss_pred ---------ccccccHHHHHHHHHHHHHHHhhCCCCcc--HHHHHHHHHhcCCCccc
Confidence 00000011223444455566666776655 34457777777777655
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.01 E-value=5.4e-05 Score=75.15 Aligned_cols=90 Identities=13% Similarity=0.077 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 006636 422 NVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLA 500 (637)
Q Consensus 422 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~ 500 (637)
+..+|..+..+|.+.|++++|+..++++++... .+...+..+..+|...|++++|+..|++..+ +.|+ ...+..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~~~l~ 348 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 445677777777777777777777777776432 2456777777777777777777777777765 3343 44555566
Q ss_pred HHHHHcCCHHHHHH
Q 006636 501 EARRATGLTKEAKR 514 (637)
Q Consensus 501 ~~~~~~g~~~eA~~ 514 (637)
.++...++.+++.+
T Consensus 349 ~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 349 KVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666655555543
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.00 E-value=1.7e-05 Score=64.01 Aligned_cols=86 Identities=16% Similarity=0.135 Sum_probs=50.9
Q ss_pred cCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006636 366 AGFMDKCKEIFDDMGKAG--IKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAI 443 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 443 (637)
.|++++|+..|++.++.+ -+.+..++..+...|.+.|++++|+..|++..+.. +.+..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 455666666666666542 12234556666666666666666666666666653 445666666666666666667776
Q ss_pred HHHHHHHHC
Q 006636 444 EVFDKMCEH 452 (637)
Q Consensus 444 ~~~~~m~~~ 452 (637)
..|++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666653
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.99 E-value=4.3e-05 Score=65.34 Aligned_cols=133 Identities=14% Similarity=0.012 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----H
Q 006636 354 ITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIK-PD----AHAYSILAKGYVREQEPEKAEELLMTMIESGF-HPN----V 423 (637)
Q Consensus 354 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~ 423 (637)
.++..+...+...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+... .++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34556666677777777777777766542100 11 24677778888888888888888887664210 111 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006636 424 VIFTTIISGWCSDGSMDRAIEVFDKMCEH----GVSPN-LKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
.++..+...+...|++++|...+++..+. +..+. ..++..+...+...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 46777888888999999999999887643 21111 34577788888999999999999888753
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.96 E-value=0.00032 Score=57.27 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=10.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHH
Q 006636 79 MNSLIERGKPQEAQAIFNNLIE 100 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~ 100 (637)
...+.+.|++++|+..|+.+.+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~ 30 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLE 30 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 185
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.95 E-value=9.7e-05 Score=75.78 Aligned_cols=88 Identities=8% Similarity=-0.090 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 006636 143 IFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRA 222 (637)
Q Consensus 143 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 222 (637)
..|..+..+|.+.|++++|+..|++..+..+. +...|..+..+|...|++++|+..|++..+.. +.+...+..+..+
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 45555556666666666666666666555432 45556666666666666666666666665543 3344555566666
Q ss_pred HHhcCCHHHHH
Q 006636 223 WCNEKNITEAW 233 (637)
Q Consensus 223 ~~~~g~~~~A~ 233 (637)
+.+.++.+++.
T Consensus 395 ~~~~~~~~~a~ 405 (457)
T 1kt0_A 395 QKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666555554
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.95 E-value=2.7e-05 Score=80.30 Aligned_cols=157 Identities=13% Similarity=0.015 Sum_probs=108.0
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006636 361 NAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMD 440 (637)
Q Consensus 361 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 440 (637)
..+.+.|++++|+..+++..+.. +.+..++..+...|.+.|++++|+..+++..+.. +.+..+|..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34567788999999998888763 4468888889999999999999999999998874 567888889999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHH-----------HHHHC-----CC-----CCCHHHHH
Q 006636 441 RAIEVFDKMCEHGVSPNLKTFETLMWG--YSEARQPWRAEEILQ-----------IMKAF-----GV-----HPQKSTFL 497 (637)
Q Consensus 441 ~A~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~-----------~m~~~-----g~-----~p~~~~~~ 497 (637)
+|++.|+++.+.... +...+..+..+ +...|++++|++.++ +..+. +. ..+...+.
T Consensus 92 eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~ 170 (477)
T 1wao_1 92 AALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMK 170 (477)
T ss_dssp HHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccccccHHHHH
Confidence 999999998875322 33345555444 778899999999887 32210 00 12344566
Q ss_pred HHHHHHHHcCCHH--HHHHHHHHHh
Q 006636 498 LLAEARRATGLTK--EAKRILSKIK 520 (637)
Q Consensus 498 ~l~~~~~~~g~~~--eA~~~~~~~~ 520 (637)
.++..+...+.+. ++..++.++.
T Consensus 171 ~lie~l~~~~~l~e~~v~~L~~~a~ 195 (477)
T 1wao_1 171 ELMQWYKDQKKLHRKCAYQILVQVK 195 (477)
T ss_dssp HHHHHHHTCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 6777777766543 3334555543
No 187
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.94 E-value=0.00027 Score=59.39 Aligned_cols=106 Identities=14% Similarity=0.060 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----
Q 006636 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHP-------NV-----VIFTTIISGWCSDGSMDRAIEVFDKMCEH----- 452 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 452 (637)
.+......+.+.|++++|+..|++.++.. +. +. ..|..+..++...|++++|+..+++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~-p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEIS-HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 44555666777777777777777777642 11 23 38888888888999999999988888874
Q ss_pred CCCCCH-HHH----HHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHHH
Q 006636 453 GVSPNL-KTF----ETLMWGYSEARQPWRAEEILQIMKA-----FGVHPQKSTF 496 (637)
Q Consensus 453 ~~~p~~-~~~----~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~ 496 (637)
.+.|+. ..| .....++...|++++|+..|++..+ .|+.+.....
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 114654 467 8888899999999999999988753 4555544433
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.94 E-value=0.00011 Score=63.26 Aligned_cols=100 Identities=12% Similarity=0.086 Sum_probs=73.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHC--------C---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006636 356 YSTIMNAWSTAGFMDKCKEIFDDMGKA--------G---------IKPDAHAYSILAKGYVREQEPEKAEELLMTMIESG 418 (637)
Q Consensus 356 ~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 418 (637)
+......+.+.|++++|+..|...+.. . .+.+..+|..+..+|.+.|++++|+..+++.++..
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 444445555555555555555554432 0 01234678888899999999999999999998875
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006636 419 FHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNL 458 (637)
Q Consensus 419 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 458 (637)
+.+...|..+..+|...|++++|+..|++..+.. |+.
T Consensus 94 -p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--p~~ 130 (162)
T 3rkv_A 94 -ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH--PAA 130 (162)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--GGG
T ss_pred -CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC--CCC
Confidence 6678899999999999999999999999998853 543
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.91 E-value=2e-05 Score=63.68 Aligned_cols=83 Identities=12% Similarity=0.150 Sum_probs=32.9
Q ss_pred CChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006636 86 GKPQEAQAIFNNLIEGG--HKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMD 163 (637)
Q Consensus 86 g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 163 (637)
|++++|+..|++.++.+ .+.+..++..+..++...|++++|...|+++++.. +.+...+..+..++...|++++|+.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 44444444444444321 01123334444444444444444444444444432 2333344444444444444444444
Q ss_pred HHHHHH
Q 006636 164 TFWKMK 169 (637)
Q Consensus 164 ~~~~m~ 169 (637)
.|++..
T Consensus 83 ~~~~al 88 (117)
T 3k9i_A 83 LLLKII 88 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 190
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.90 E-value=3.7e-05 Score=79.28 Aligned_cols=63 Identities=11% Similarity=0.077 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006636 142 SIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSR 205 (637)
Q Consensus 142 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 205 (637)
...+..+..+|.+.|++++|+..+++..+..+. +..+|..+..+|...|++++|++.|++..+
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 102 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAALRDYETVVK 102 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333334444444444444444444444333221 333344444444444444444444444433
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.87 E-value=0.00016 Score=71.79 Aligned_cols=91 Identities=10% Similarity=-0.027 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006636 176 TTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIA 255 (637)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 255 (637)
+..+|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|+..|++..+.. +.+...+..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~ 348 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID--PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34566666667777777777777777766643 3456667777777777777777777777766553 22455666666
Q ss_pred HHHHHcCCHHHHHH
Q 006636 256 TAYAQNGEADQAEE 269 (637)
Q Consensus 256 ~~~~~~g~~~~A~~ 269 (637)
.++...++.+++.+
T Consensus 349 ~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 349 KVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666665543
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.85 E-value=3.8e-05 Score=75.31 Aligned_cols=95 Identities=15% Similarity=0.019 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHH-
Q 006636 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS-TFLLLAEA- 502 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~- 502 (637)
.|..+..+|.+.|++++|+..+++.++... .+...|..+..+|...|++++|+..|++..+ +.|+.. .+..+..+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHH
Confidence 677788888888888888888888887542 2567788888888888888888888888755 445433 33333333
Q ss_pred HHHcCCHHHHHHHHHHHhhh
Q 006636 503 RRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 503 ~~~~g~~~eA~~~~~~~~~~ 522 (637)
....+..+++..++.+|...
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHhhCC
Confidence 22334445555555555433
No 193
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.80 E-value=4.5e-05 Score=63.95 Aligned_cols=91 Identities=12% Similarity=-0.034 Sum_probs=50.6
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006636 400 REQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSM----------DRAIEVFDKMCEHGVSPNLKTFETLMWGYS 469 (637)
Q Consensus 400 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 469 (637)
+.+.+++|++.+++..+.. +.+...|..+..++...|++ ++|+..|++.++.... +...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 3445566666666655553 44555666555555555443 4666666666664322 3446666666666
Q ss_pred hcC-----------ChhHHHHHHHHHHHCCCCCCHH
Q 006636 470 EAR-----------QPWRAEEILQIMKAFGVHPQKS 494 (637)
Q Consensus 470 ~~g-----------~~~~A~~~~~~m~~~g~~p~~~ 494 (637)
..| ++++|++.|++..+ +.|+..
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~ 125 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNT 125 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCH
Confidence 543 55566666665555 445543
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.77 E-value=0.00089 Score=55.59 Aligned_cols=110 Identities=10% Similarity=0.023 Sum_probs=55.3
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 006636 368 FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS----DGSMDRAI 443 (637)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 443 (637)
++++|+..|++..+.| .++.. |...|...+..++|.++|++..+.| +...+..|...|.. .++.++|+
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3445555555555544 22222 4444445555555555555555532 44555555555554 45555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 006636 444 EVFDKMCEHGVSPNLKTFETLMWGYSE----ARQPWRAEEILQIMKAFG 488 (637)
Q Consensus 444 ~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 488 (637)
..|++..+.| +...+..|...|.. .++.++|..+|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555555543 34444455555554 455555555555554433
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.76 E-value=2.3e-05 Score=62.29 Aligned_cols=63 Identities=10% Similarity=-0.001 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006636 423 VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
...|..+...+...|++++|+..|++..+... .+...+..+..++...|++++|+..+++..+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34444555555555555555555555554321 1344555555555555555555555555544
No 196
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.76 E-value=0.0014 Score=68.88 Aligned_cols=137 Identities=7% Similarity=0.021 Sum_probs=88.0
Q ss_pred HcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006636 84 ERGK-PQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKR----------FNSIHSIMSQVEENGMDPDSIFFNAVINAF 152 (637)
Q Consensus 84 ~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 152 (637)
+.|. .++|++.+++++..+ +-+..+|+.--.++...++ +++++..++.+++.. +-+..+|+.-...+
T Consensus 40 ~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l 117 (567)
T 1dce_A 40 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3444 456788888887742 2356677776666666555 677777777777665 55666676666666
Q ss_pred HhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 006636 153 SESG--NMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAG-KPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCN 225 (637)
Q Consensus 153 ~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 225 (637)
.+.+ ++++++..++++.+.++. +..+|+.-.-++.+.| .++++++.++++.+.. +.|..+|+.....+.+
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHH
T ss_pred HHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CCCccHHHHHHHHHHh
Confidence 6666 557777777777766544 6666666666666666 6667777776666653 4566666666555544
No 197
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.75 E-value=7.8e-05 Score=73.10 Aligned_cols=150 Identities=8% Similarity=-0.024 Sum_probs=75.3
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006636 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 150 (637)
....+..+...+.+.|++++|+..|++.+.. .|+... +...++.+++...+. ...|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 4555667777777888888888888887763 343321 111222222222111 125667777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHhcCCH
Q 006636 151 AFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRA-WCNEKNI 229 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~-~~~~g~~ 229 (637)
+|.+.|++++|+..|++..+..+. +...|..+..+|...|++++|+..|++..+.. +.+...+..+... ....+..
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH
Confidence 777888888888888877776432 66777778888888888888888888776643 3345555555554 3345566
Q ss_pred HHHHHHHHHHHHC
Q 006636 230 TEAWNVMHKMAAS 242 (637)
Q Consensus 230 ~~A~~~~~~~~~~ 242 (637)
+++..+|..|...
T Consensus 316 ~~a~~~~~~~l~~ 328 (338)
T 2if4_A 316 QKQKEMYKGIFKG 328 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHHhhCC
Confidence 7777777777654
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.74 E-value=5.5e-05 Score=60.02 Aligned_cols=93 Identities=10% Similarity=-0.033 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------HH
Q 006636 387 DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPN-------LK 459 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-------~~ 459 (637)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..|+++.+.. |+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 45667788888889999999999999888764 5678888888999999999999999999988753 44 44
Q ss_pred HHHHHHHHHHhcCChhHHHHHHH
Q 006636 460 TFETLMWGYSEARQPWRAEEILQ 482 (637)
Q Consensus 460 ~~~~l~~~~~~~g~~~~A~~~~~ 482 (637)
.+..+..++...|+.++|+..++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHH
Confidence 56666666766676666655443
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.68 E-value=0.0015 Score=54.28 Aligned_cols=80 Identities=13% Similarity=-0.024 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cC
Q 006636 156 GNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI----AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCN----EK 227 (637)
Q Consensus 156 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g 227 (637)
+.+++|.+.|++..+.| +...+..|...|.. .+++++|++.|++..+.+ +...+..|...|.. .+
T Consensus 39 ~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~ 111 (138)
T 1klx_A 39 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN----DQDGCLILGYKQYAGKGVVK 111 (138)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCC
T ss_pred CCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC----CHHHHHHHHHHHHCCCCCCc
Confidence 33444444444444432 33334444444433 344444444444443332 33334444444443 34
Q ss_pred CHHHHHHHHHHHHHC
Q 006636 228 NITEAWNVMHKMAAS 242 (637)
Q Consensus 228 ~~~~A~~~~~~~~~~ 242 (637)
++++|..+|++..+.
T Consensus 112 d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 112 NEKQAVKTFEKACRL 126 (138)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC
Confidence 444444444444433
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.64 E-value=0.00037 Score=71.36 Aligned_cols=127 Identities=9% Similarity=-0.014 Sum_probs=91.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHC---CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CCCH-HHHH
Q 006636 397 GYVREQEPEKAEELLMTMIES---GF---HP-NVVIFTTIISGWCSDGSMDRAIEVFDKMCE-----HGV-SPNL-KTFE 462 (637)
Q Consensus 397 ~~~~~g~~~~A~~~~~~~~~~---~~---~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~p~~-~~~~ 462 (637)
.+..+|++++|+.++++..+. -+ .| ...+++.|...|...|++++|+.++++.++ .|. .|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355778888888888877642 11 12 235788888899999999999999988764 231 2332 3688
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH---CCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhhhh
Q 006636 463 TLMWGYSEARQPWRAEEILQIMKA---FGVHPQK----STFLLLAEARRATGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 463 ~l~~~~~~~g~~~~A~~~~~~m~~---~g~~p~~----~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 523 (637)
.|...|...|++++|..++++..+ .-+.|+. .....+..++...|.+++|+.++.++.+..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999988742 1123442 245566677788899999999999986553
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.61 E-value=0.0003 Score=56.21 Aligned_cols=78 Identities=14% Similarity=0.108 Sum_probs=43.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006636 372 CKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 372 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
++..|+...+.. +.+...+..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555554432 2345555556666666666666666666655543 34455555566666666666666666665554
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.59 E-value=0.00016 Score=60.65 Aligned_cols=100 Identities=10% Similarity=0.046 Sum_probs=71.8
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006636 364 STAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQE----------PEKAEELLMTMIESGFHPNVVIFTTIISGW 433 (637)
Q Consensus 364 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 433 (637)
.+.+.+++|++.++...+.. +.+...|..+..++...++ +++|+..|++.++.. +.+..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 34556677777777766654 3466677767766666655 458888888888874 55778888888888
Q ss_pred HhcC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006636 434 CSDG-----------SMDRAIEVFDKMCEHGVSPNLKTFETLMWG 467 (637)
Q Consensus 434 ~~~g-----------~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 467 (637)
...| ++++|+..|+++++ +.|+...|..-+..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 8764 89999999999998 45776666555443
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.58 E-value=0.001 Score=50.11 Aligned_cols=63 Identities=22% Similarity=0.335 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006636 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (637)
..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|+..|++..+.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344445555555555555555555555442 334455555555555555555555555555543
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.55 E-value=0.0004 Score=55.48 Aligned_cols=61 Identities=10% Similarity=0.077 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006636 107 LVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKM 168 (637)
Q Consensus 107 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m 168 (637)
...+..+..++...|++++|...|++.++.. +.+...+..+...|...|++++|...|++.
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444444444444444444444443332 223333333444444444444444444333
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.55 E-value=0.00038 Score=71.27 Aligned_cols=125 Identities=14% Similarity=0.047 Sum_probs=90.6
Q ss_pred HHHHcCChhHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHH
Q 006636 362 AWSTAGFMDKCKEIFDDMGKA---GIKP----DAHAYSILAKGYVREQEPEKAEELLMTMIES-----G-FHPN-VVIFT 427 (637)
Q Consensus 362 ~~~~~g~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~~~ 427 (637)
.+...|++++|+.++++.++. -+.+ ...+++.|+..|...|++++|+.++++..+. | ..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355788999999888876642 1122 2567888999999999999999999887641 2 1222 35788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-CCH-HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006636 428 TIISGWCSDGSMDRAIEVFDKMCE-----HGVS-PNL-KTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~-----~~~~-p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
.|...|...|++++|+.+++++.+ .|.. |+. .+...+..++...|++++|..+++++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999998864 3422 222 2455666677788889999999888864
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.44 E-value=0.0016 Score=49.02 Aligned_cols=79 Identities=15% Similarity=0.082 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006636 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA 151 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 151 (637)
...|..+...+...|++++|+..|++..+.. +.+..++..+..++...|++++|...+++..+.. +.+...+..+...
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4445555556666666666666666655432 2244555555555555555555555555555543 3344444444444
Q ss_pred H
Q 006636 152 F 152 (637)
Q Consensus 152 ~ 152 (637)
+
T Consensus 87 ~ 87 (91)
T 1na3_A 87 K 87 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.38 E-value=0.00081 Score=52.14 Aligned_cols=64 Identities=17% Similarity=0.203 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006636 387 DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
+...+..+...|.+.|++++|+..|+++.+.. +.+...|..+..+|...|++++|+..|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45556666666666666666666666665543 34455666666666666666666666666554
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.22 E-value=0.0013 Score=50.88 Aligned_cols=61 Identities=16% Similarity=0.155 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006636 142 SIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLM 203 (637)
Q Consensus 142 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 203 (637)
...+..+...|...|++++|+..|++..+..+. +...|..+..+|...|++++|++.|++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333444444444444444444444444433221 2333444444444444444444444433
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.81 E-value=0.014 Score=56.21 Aligned_cols=73 Identities=11% Similarity=0.075 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006636 420 HPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTF 496 (637)
Q Consensus 420 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 496 (637)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+...|++++|.+.|++... +.|...+|
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChH
Confidence 4455556555555555566666666666666543 5555555556666666666666666666554 44555443
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.62 E-value=0.055 Score=52.17 Aligned_cols=144 Identities=10% Similarity=0.018 Sum_probs=98.6
Q ss_pred CCCCHHHHHHHHHHHH--hcC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cC--C---HHHHHHHHHHHH
Q 006636 103 HKPSLVTYTTLLAALT--IQK---RFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE---SG--N---MEEAMDTFWKMK 169 (637)
Q Consensus 103 ~~~~~~~~~~ll~~~~--~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~g--~---~~~A~~~~~~m~ 169 (637)
.+.+..+|...+++.. ..+ +..+|..+|+++++.. |-....+..+..+|.. .+ . .......++...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 3557777777775543 333 3478999999999874 4445555555444431 11 1 111122222221
Q ss_pred HC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006636 170 ES-GLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDV 248 (637)
Q Consensus 170 ~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 248 (637)
.. ..+.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++.... .|..
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~ 343 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGA 343 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCc
Confidence 11 124578888888887888899999999999999875 78888888889999999999999999999886 5676
Q ss_pred HHHH
Q 006636 249 VTYN 252 (637)
Q Consensus 249 ~~~~ 252 (637)
.+|.
T Consensus 344 ~t~~ 347 (372)
T 3ly7_A 344 NTLY 347 (372)
T ss_dssp HHHH
T ss_pred ChHH
Confidence 6665
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.54 E-value=0.0077 Score=46.10 Aligned_cols=55 Identities=9% Similarity=0.105 Sum_probs=29.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006636 431 SGWCSDGSMDRAIEVFDKMCEHGVSPNLK-TFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
..+...|++++|+..|+++.+... .+.. .+..+..++...|++++|+..|++..+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555555555555555321 1334 555555555555666666655555544
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.46 E-value=0.019 Score=57.68 Aligned_cols=90 Identities=10% Similarity=-0.028 Sum_probs=54.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCCH-HHH
Q 006636 396 KGYVREQEPEKAEELLMTMIESG---FHPN----VVIFTTIISGWCSDGSMDRAIEVFDKMCE-----HG-VSPNL-KTF 461 (637)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~-~~p~~-~~~ 461 (637)
..+.+.|++++|+.++++..+.. +.|+ ..+++.+...|...|++++|+.+++++++ .| -.|+. .++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 33456677777777777766421 1111 34566677777777777777777776653 12 11222 256
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 006636 462 ETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 462 ~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
+.|...|...|++++|+.++++..
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 667777777777777777776653
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.44 E-value=0.0096 Score=59.81 Aligned_cols=84 Identities=15% Similarity=0.076 Sum_probs=41.6
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CCCH-HHHHHHHH
Q 006636 401 EQEPEKAEELLMTMIES---GFHPN----VVIFTTIISGWCSDGSMDRAIEVFDKMCE-----HGV-SPNL-KTFETLMW 466 (637)
Q Consensus 401 ~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~p~~-~~~~~l~~ 466 (637)
.|++++|+.++++..+. -+.|+ ..+++.+..+|...|++++|+.+++++++ .|. .|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35566666666555431 01111 23455556666666666666666655542 121 1222 23555555
Q ss_pred HHHhcCChhHHHHHHHHH
Q 006636 467 GYSEARQPWRAEEILQIM 484 (637)
Q Consensus 467 ~~~~~g~~~~A~~~~~~m 484 (637)
.|...|++++|..++++.
T Consensus 391 ~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHH
Confidence 555555555555555554
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.41 E-value=0.029 Score=42.77 Aligned_cols=59 Identities=12% Similarity=0.166 Sum_probs=41.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006636 394 LAKGYVREQEPEKAEELLMTMIESGFHPNVV-IFTTIISGWCSDGSMDRAIEVFDKMCEHG 453 (637)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 453 (637)
....+.+.|++++|...|+++.+.. +.+.. .|..+..+|...|++++|+..|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3455667777777777777776653 44556 77777777777777777777777777643
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.40 E-value=0.017 Score=58.11 Aligned_cols=87 Identities=10% Similarity=-0.029 Sum_probs=66.4
Q ss_pred HcCChhHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CC-CCCC-HHHHHHHH
Q 006636 365 TAGFMDKCKEIFDDMGK---AGIKPD----AHAYSILAKGYVREQEPEKAEELLMTMIE-----SG-FHPN-VVIFTTII 430 (637)
Q Consensus 365 ~~g~~~~a~~~~~~~~~---~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~~~-~~~~~~li 430 (637)
..|++++|+.++++.++ .-+.|+ ..+++.|...|...|++++|+.++++..+ .| ..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 35788888888887654 212222 56788899999999999999999988764 22 1233 35788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 006636 431 SGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~ 451 (637)
..|...|++++|+.+++++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998864
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.39 E-value=0.17 Score=55.78 Aligned_cols=45 Identities=16% Similarity=-0.003 Sum_probs=24.6
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006636 188 GIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKM 239 (637)
Q Consensus 188 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 239 (637)
...|++++|.++.+.+ .+...|..+...+.+.++++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4455666555553322 34455666666666666666666665554
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.31 E-value=0.27 Score=54.17 Aligned_cols=128 Identities=13% Similarity=0.069 Sum_probs=87.1
Q ss_pred HHHHHHcCChhHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006636 79 MNSLIERGKPQEAQA-IFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGN 157 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 157 (637)
.......+++++|.+ ++..+ ++......++..+...|.++.|+.+.+ +.. .-.......|+
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~ 667 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQ 667 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTC
T ss_pred HhHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCC
Confidence 445567889999876 44221 212334777788888899998887643 221 11345678899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006636 158 MEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMH 237 (637)
Q Consensus 158 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 237 (637)
++.|.++.+.+ .+...|..+...+.+.|+++.|.+.|..+.. |..+...|...|+.+...++-+
T Consensus 668 ~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~ 731 (814)
T 3mkq_A 668 LTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAK 731 (814)
T ss_dssp HHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHH
Confidence 99999987554 3778999999999999999999999998743 3445555555666665444433
Q ss_pred HHH
Q 006636 238 KMA 240 (637)
Q Consensus 238 ~~~ 240 (637)
...
T Consensus 732 ~a~ 734 (814)
T 3mkq_A 732 DAE 734 (814)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.30 E-value=0.036 Score=41.91 Aligned_cols=64 Identities=13% Similarity=0.087 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006636 387 DAHAYSILAKGYVREQE---PEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
++..+..+..++...++ .++|..++++..+.. +.++..+..+...+...|++++|+..|+++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444444444433322 345555555554443 34444444455555555555555555555544
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.23 E-value=0.043 Score=55.15 Aligned_cols=92 Identities=9% Similarity=-0.013 Sum_probs=71.3
Q ss_pred HHHHHHcCChhHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCCC-HHH
Q 006636 360 MNAWSTAGFMDKCKEIFDDMGKA---GIKPD----AHAYSILAKGYVREQEPEKAEELLMTMIES-----G-FHPN-VVI 425 (637)
Q Consensus 360 ~~~~~~~g~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~ 425 (637)
+..+.+.|++++|+.++++.++. -+.|+ ..+++.|+..|...|++++|+.+++++.+. | ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44556788999999999988753 12222 567888999999999999999999987642 2 1222 357
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006636 426 FTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
++.|...|...|++++|+.+++++.+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88999999999999999999998864
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.20 E-value=0.034 Score=45.95 Aligned_cols=83 Identities=13% Similarity=0.102 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHH
Q 006636 440 DRAIEVFDKMCEHGVSPNLKTFETLMWGYSEAR---QPWRAEEILQIMKAFGVHP--QKSTFLLLAEARRATGLTKEAKR 514 (637)
Q Consensus 440 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~eA~~ 514 (637)
..+.+-|.+..+.|. ++..+...+..++.+++ +.++|+.+++...+.. .| ..+.+-.+.-++.+.|++++|++
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344444554444443 45555555555666655 3445666665554422 13 12333344445566666666666
Q ss_pred HHHHHhhhhc
Q 006636 515 ILSKIKNKER 524 (637)
Q Consensus 515 ~~~~~~~~~~ 524 (637)
+++++.+..|
T Consensus 93 y~~~lL~ieP 102 (152)
T 1pc2_A 93 YVRGLLQTEP 102 (152)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHhcCC
Confidence 6666665555
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.20 E-value=0.037 Score=41.79 Aligned_cols=66 Identities=5% Similarity=-0.105 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006636 420 HPNVVIFTTIISGWCSDGS---MDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 420 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
+.|+..+..+..++...++ .++|..++++.++.... +......+...+...|++++|+..|+++.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5677777777777765554 68888888888875432 556777778888888888888888888876
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.08 E-value=0.88 Score=42.05 Aligned_cols=93 Identities=10% Similarity=0.107 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCH
Q 006636 229 ITEAWNVMHKMAASGMKPD---VVTYNTIATAYAQN-----GEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKE-GKI 299 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~ 299 (637)
...|...+++.++. .|+ ...|..|...|.+. |+.++|.+.|++.++.+...+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45677777777765 454 55788888888884 88888888888888865433467777788888774 888
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHH
Q 006636 300 KEALRFARTMKEYGVH--PNLVIFNL 323 (637)
Q Consensus 300 ~~A~~~~~~~~~~~~~--~~~~~~~~ 323 (637)
+++.+.+++.+..... |+....+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 8888888888877544 54443333
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.59 E-value=0.11 Score=42.82 Aligned_cols=64 Identities=14% Similarity=0.097 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006636 387 DAHAYSILAKGYVREQ---EPEKAEELLMTMIESGFHP--NVVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
+..+...+..++++.+ +.++++.+|++..+.+ .| +...+-.+.-+|.+.|++++|.+.++.+++
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 4444444444444444 3334444444444432 12 123333334444444444444444444444
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.53 E-value=0.92 Score=38.45 Aligned_cols=102 Identities=11% Similarity=0.125 Sum_probs=51.4
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006636 80 NSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNME 159 (637)
Q Consensus 80 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 159 (637)
....+.|+++.|.++.+.+ .+...|..|.......|+++-|...|.+... +..|.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3345566666666665544 2455666666666666666666666654321 333344444555554
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006636 160 EAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDL 202 (637)
Q Consensus 160 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 202 (637)
.-.++-+.....| -++.....+.-.|++++++++|.+
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4443333333322 133334444455555555555543
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.18 E-value=0.22 Score=38.41 Aligned_cols=64 Identities=17% Similarity=0.132 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006636 388 AHAYSILAKGYVREQEPEKAEELLMTMIESG------FHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
..-+..|+..+.+.++++.|...|+...+.. -.+...++..+..+|.+.|+++.|+.+++++.+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3444455566666666666666666554420 022344555666666666666666666666655
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.18 E-value=1.3 Score=37.60 Aligned_cols=98 Identities=12% Similarity=0.158 Sum_probs=46.6
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 006636 118 TIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESV 197 (637)
Q Consensus 118 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 197 (637)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.-.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 3445555555554432 2445555555555555555555555555432 233333444455554444
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006636 198 KLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMH 237 (637)
Q Consensus 198 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 237 (637)
++-+.....| -++.....+.-.|+++++.++|.
T Consensus 81 kla~iA~~~g-------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 81 KMQNIAQTRE-------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHTT-------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHCc-------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 4333333322 13333444445555555555553
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.93 E-value=0.26 Score=37.95 Aligned_cols=70 Identities=4% Similarity=-0.030 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 006636 422 NVVIFTTIISGWCSDGSMDRAIEVFDKMCEHG------VSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK 493 (637)
Q Consensus 422 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 493 (637)
+..-...|+..+...|++..|...|+++.+.- -.+....+..|..++.+.|++++|+.+++++.+ +.|+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 34445566777777777777777777766421 112345666677777777777777777777665 44553
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.76 E-value=0.37 Score=44.55 Aligned_cols=89 Identities=15% Similarity=0.132 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCH
Q 006636 369 MDKCKEIFDDMGKAGIKPD---AHAYSILAKGYVR-----EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSD-GSM 439 (637)
Q Consensus 369 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~ 439 (637)
...|...+++.++. .|+ ...|..|...|.+ -|+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45666666776664 344 4577778877877 488888888888888764112367777777777774 888
Q ss_pred HHHHHHHHHHHHCCCC--CCHH
Q 006636 440 DRAIEVFDKMCEHGVS--PNLK 459 (637)
Q Consensus 440 ~~A~~~~~~m~~~~~~--p~~~ 459 (637)
++|.+.+++.+..... |+..
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCH
T ss_pred HHHHHHHHHHHcCCCCCCCChh
Confidence 8888888888876555 5533
No 229
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.64 E-value=1.3 Score=35.21 Aligned_cols=138 Identities=15% Similarity=0.160 Sum_probs=76.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 006636 296 EGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEI 375 (637)
Q Consensus 296 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 375 (637)
.|.+++..++..+.... .+..-+|-++--....-+-+-..++++.+-+. .|. ..+|++......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHHH
Confidence 56667777777666652 34444454544444444434444444433221 111 123333333333
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006636 376 FDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVS 455 (637)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 455 (637)
+-.+ ..+......-++.+...|.-+.-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.++.+.|++
T Consensus 84 ~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 84 GVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 3222 123444555566677777777777777775443 2667777777777777777777777777777777654
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.16 E-value=0.55 Score=38.30 Aligned_cols=52 Identities=19% Similarity=0.161 Sum_probs=32.6
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006636 366 AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESG 418 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 418 (637)
.++++.|.++|+.+++.+ +.-..+|......-.++|++..|.+++.+.+..+
T Consensus 73 i~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HHCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 366777777777665432 2226666666666666777777777777766654
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.98 E-value=0.22 Score=39.55 Aligned_cols=83 Identities=14% Similarity=0.094 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHH
Q 006636 441 RAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWR---AEEILQIMKAFGVHP--QKSTFLLLAEARRATGLTKEAKRI 515 (637)
Q Consensus 441 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~eA~~~ 515 (637)
.+.+-|.+....|. |+..+-..+..++.++....+ ++.+++...+.+ .| ..+..-.+.-++.+.|++++|.++
T Consensus 19 ~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 19 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33444444433332 455555555555555554444 555555554321 12 112222344455566666666666
Q ss_pred HHHHhhhhcc
Q 006636 516 LSKIKNKERT 525 (637)
Q Consensus 516 ~~~~~~~~~~ 525 (637)
++.+....|+
T Consensus 97 ~~~lL~~eP~ 106 (126)
T 1nzn_A 97 VRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHHhCCC
Confidence 6666655553
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.90 E-value=2 Score=34.28 Aligned_cols=66 Identities=12% Similarity=0.110 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 006636 213 LRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGV 279 (637)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 279 (637)
...+...+......|.-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 334444455555555555555555554321 244555555555555555555555555555555554
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.44 E-value=0.34 Score=38.45 Aligned_cols=96 Identities=14% Similarity=0.066 Sum_probs=73.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHH
Q 006636 394 LAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDR---AIEVFDKMCEHGVSP--NLKTFETLMWGY 468 (637)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p--~~~~~~~l~~~~ 468 (637)
+++.......+..+.+-|.+....| .++..+--.+.+++.+..+... ++.++++....+ .| .....-.|.-++
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHH
Confidence 3444445556667777777776655 5888888889999999887666 999999988754 23 334556677799
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCH
Q 006636 469 SEARQPWRAEEILQIMKAFGVHPQK 493 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~~g~~p~~ 493 (637)
.+.|++++|.++++.+.+ ++|+.
T Consensus 85 yklg~Y~~A~~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHhhhHHHHHHHHHHHHH--hCCCC
Confidence 999999999999999988 77864
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.44 E-value=0.6 Score=38.06 Aligned_cols=56 Identities=18% Similarity=0.280 Sum_probs=38.4
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006636 400 REQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSP 456 (637)
Q Consensus 400 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 456 (637)
..++.++|.++|+.+.+.+ +.=...|.....--.++|++..|.+++.+.+..+.+|
T Consensus 72 ei~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HhcCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 3467778888888776542 2226666666666677888888888888887766553
No 235
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.38 E-value=11 Score=41.24 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=9.4
Q ss_pred HHHHHHcCChhHHHHHHHHHH
Q 006636 79 MNSLIERGKPQEAQAIFNNLI 99 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~ 99 (637)
++.+.+.++.+.+.++|..+.
T Consensus 237 ~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 237 NKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 333334444444444444443
No 236
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.24 E-value=9.6e-06 Score=79.32 Aligned_cols=239 Identities=13% Similarity=0.166 Sum_probs=155.2
Q ss_pred ccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 006636 67 ESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
..+..+..|..|..++...|+..+|++.|-+. .|+..|..++.++.+.|.++.....+....+. ..++.+=+
T Consensus 49 ~~~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDt 120 (624)
T 3lvg_A 49 ERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVET 120 (624)
T ss_dssp SSCCCCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTH
T ss_pred HHhCCccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHH
Confidence 34567778999999999999999988766432 25667889999999999999988887766554 34556667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 006636 147 AVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNE 226 (637)
Q Consensus 147 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 226 (637)
.|+-+|++.+++.+-.+++ . .|+..-...+.+-|...|.++.|.-+|..+.. |..|...+.+.
T Consensus 121 eLi~ayAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN----------~akLAstLV~L 183 (624)
T 3lvg_A 121 ELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------FGRLASTLVHL 183 (624)
T ss_dssp HHHHHHHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC----------CTTTSSSSSSC
T ss_pred HHHHHHHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc----------HHHHHHHHHHH
Confidence 8999999999876533322 2 25666677788888888999888888776543 33444555666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006636 227 KNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFA 306 (637)
Q Consensus 227 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 306 (637)
|++..|.+.-++ ..++.||-.+-.+|...+.+..|.-.--.++-. ..-...++..|-..|.+++-+.++
T Consensus 184 ~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLl 252 (624)
T 3lvg_A 184 GEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITML 252 (624)
T ss_dssp SGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTH
T ss_pred HHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 666665543222 225667777777777777776665544443321 112233555666677777777776
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHhhHHHHHHH
Q 006636 307 RTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLAL 343 (637)
Q Consensus 307 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 343 (637)
+.-.... +.....|+-|.-.|++ -+++...+.++.
T Consensus 253 EaglglE-rAHmGmFTELaILYsK-Y~PeKlmEHlkl 287 (624)
T 3lvg_A 253 EAALGLE-RAHMGMFTELAILYSK-FKPQKMREHLEL 287 (624)
T ss_dssp HHHTTST-TCCHHHHHHHHHHHHS-SCTTHHHHHHTT
T ss_pred HHHhCCC-chhHHHHHHHHHHHHh-cCHHHHHHHHHH
Confidence 6655321 3445566666555554 344444444443
No 237
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.26 E-value=13 Score=37.17 Aligned_cols=164 Identities=4% Similarity=0.001 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC--H
Q 006636 355 TYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKP-D----AHAYSILAKGYVREQEPEKAEELLMTMIE----SGFHPN--V 423 (637)
Q Consensus 355 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~--~ 423 (637)
....|...|...|++.+|..++..+...-... + ...+...++.|...+++..|..+++++.. ...+|+ .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 34567788888999999999999876421111 1 35666778888999999999999888642 221222 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHH----HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 006636 424 VIFTTIISGWCSDGSMDRAIEVFDKMCEH-GVSPNLKTFE----TLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLL 498 (637)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 498 (637)
..+..++..+...+++.+|.+.|.++.+. ...-|...+. .++....-++...+--.+..........++.+.|..
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~ 298 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQES 298 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHH
Confidence 35667777888899999999888887642 1112332222 222222223333333333333322222346678888
Q ss_pred HHHHHHHc--CCHHHHHHHHHH
Q 006636 499 LAEARRAT--GLTKEAKRILSK 518 (637)
Q Consensus 499 l~~~~~~~--g~~~eA~~~~~~ 518 (637)
++.++... .+++...+.+..
T Consensus 299 L~k~f~~~~L~~~~~~~~~~~~ 320 (445)
T 4b4t_P 299 LVKLFTTNELMRWPIVQKTYEP 320 (445)
T ss_dssp HHHHHHHCCSSSHHHHHHHTCS
T ss_pred HHHHHHhchHhhhHHHHHHHHH
Confidence 88888654 345555555544
No 238
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=91.01 E-value=0.015 Score=57.32 Aligned_cols=218 Identities=10% Similarity=0.085 Sum_probs=134.1
Q ss_pred CcchhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006636 69 CRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAV 148 (637)
Q Consensus 69 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (637)
..|+..|..++....+.|.+++-+..+.-..+.. .++..=+.|+-+|++.+++.+..+.+. .||..-...+
T Consensus 80 A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~V 150 (624)
T 3lvg_A 80 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQV 150 (624)
T ss_dssp CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHH
Confidence 3456667778999999999999888777655532 344444688999999988766544332 4666666777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 006636 149 INAFSESGNMEEAMDTFWKMKESG--------------------LTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGN 208 (637)
Q Consensus 149 l~~~~~~g~~~~A~~~~~~m~~~~--------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 208 (637)
.+-|...|.++.|.-+|..+.... -.-++.||--+-.+|...+++.-|.-.--.+.-.
T Consensus 151 GDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-- 228 (624)
T 3lvg_A 151 GDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-- 228 (624)
T ss_dssp HHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC--
T ss_pred HHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc--
Confidence 788888888888877775543210 0125567777777777777776665444333321
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCC------C
Q 006636 209 VKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEH-NGVQ------P 281 (637)
Q Consensus 209 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~------~ 281 (637)
+| -...++..|-..|.+++-+.+++.-... -+.-...|+-|.-.|++- ++++..+.++..-. .+++ .
T Consensus 229 --ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE 302 (624)
T 3lvg_A 229 --AD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAE 302 (624)
T ss_dssp --SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHT
T ss_pred --HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 11 1233555666777777777777776532 133456677777777664 34444333322111 1111 1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHH
Q 006636 282 NGRTCGIIISGYCKEGKIKEAL 303 (637)
Q Consensus 282 ~~~~~~~li~~~~~~g~~~~A~ 303 (637)
....|..++-.|.+..+++.|.
T Consensus 303 ~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 303 QAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHhhHHHHHHHHhcchhHHHHH
Confidence 3455777777777777777664
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.21 E-value=1.8 Score=42.53 Aligned_cols=77 Identities=13% Similarity=0.078 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-----HCCCCCCHHHHHHH
Q 006636 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK-----AFGVHPQKSTFLLL 499 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~~l 499 (637)
+...++..+...|+..+|+..++.+..... -+...+..++.++...|+..+|++.|+... +.|+.|..++-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 344566777888999999988888876532 377788889999999999999998888764 47899987754444
Q ss_pred HHH
Q 006636 500 AEA 502 (637)
Q Consensus 500 ~~~ 502 (637)
-.+
T Consensus 252 ~~i 254 (388)
T 2ff4_A 252 ERI 254 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.60 E-value=1.6 Score=42.92 Aligned_cols=71 Identities=11% Similarity=0.133 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHHH
Q 006636 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMC-----EHGVSPNLKTF 461 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~~~ 461 (637)
+...++..+...|++++|...+..+.... +-+...|..++.++...|+..+|++.|++.. +.|+.|...+-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34556778889999999999999888764 6788899999999999999999999998875 35899987653
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.56 E-value=1.5 Score=46.87 Aligned_cols=54 Identities=17% Similarity=0.139 Sum_probs=38.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006636 150 NAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMS 204 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 204 (637)
..+...|+++-|+.+-++....-+. +-.+|..|..+|...|+++.|+-.++.++
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4455667777787777777765322 56678888888888888888877777664
No 242
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.07 E-value=5.5 Score=31.68 Aligned_cols=73 Identities=16% Similarity=0.203 Sum_probs=50.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc
Q 006636 453 GVSPNLKTFETLMWGYSEARQP---WRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 453 ~~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
+-.|+..+--.+..++.++... .+++.+++.+.+.+..-..+.+-.+.-++.+.|++++|.++.+.+....|.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 4456777777777788887755 357778877765331112444555666788888888888888888877664
No 243
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.85 E-value=36 Score=37.36 Aligned_cols=254 Identities=12% Similarity=0.076 Sum_probs=133.0
Q ss_pred HHHcCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CCCHHHHHHHHHHH
Q 006636 258 YAQNGEADQAEEVIVEMEHNG--VQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGV-------HPNLVIFNLLIKGF 328 (637)
Q Consensus 258 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~ll~~~ 328 (637)
....|+.++++.++......+ -.+....-..+.-+....|..+++..++.......- .+....-.++.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 345566777766665544311 111122333344455566666678877777654321 01111222232233
Q ss_pred HHcCC-HhhHHHHHHHHhhCCCCCCHHH--HH--HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHHc
Q 006636 329 VEIMD-RDGVDEVLALMKEFRVNPDVIT--YS--TIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAK--GYVRE 401 (637)
Q Consensus 329 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~--~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~ 401 (637)
+-.|. -+++.+.+..+.... +... .. ++...+...|+.+....++..+.+.. +..+...++. ++.-.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 33332 245566666655432 2221 12 23333456677777788888776642 3333333433 44467
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006636 402 QEPEKAEELLMTMIESGFHPNVVIF--TTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEE 479 (637)
Q Consensus 402 g~~~~A~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 479 (637)
|+.+.+..+.+.+.... .|....- .++..+|+..|+.....+++..+.+.. ..+......+.-++...|..+.+.+
T Consensus 538 g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 538 GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 88888888888887642 2222221 234456778888777777888887641 2223333333445555777776777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHh
Q 006636 480 ILQIMKAFGVHPQKSTFLLLAEARRATGLT-KEAKRILSKIK 520 (637)
Q Consensus 480 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~-~eA~~~~~~~~ 520 (637)
+++.+.+.+ .|....-..+.-....+|.. .+|...+..+.
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 776555433 33333222333333334443 67888888875
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.70 E-value=2.4 Score=45.38 Aligned_cols=49 Identities=10% Similarity=-0.158 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 006636 457 NLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATG 507 (637)
Q Consensus 457 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 507 (637)
+..-|..|+....+.+.++||.+.|+.... .+-+...+..|+..|...+
T Consensus 612 s~lEWEiLGlla~RL~h~~EA~~a~~~~l~--~RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 612 SGLEWELLGLIMLRTWHWEDAVACLRTSIV--ARFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHS--SSCCHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccCHHHHHHHHHHHHhcC
Confidence 444566666666666777777777766654 3345566666666666555
No 245
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.85 E-value=3.9 Score=30.63 Aligned_cols=51 Identities=20% Similarity=0.288 Sum_probs=42.2
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh
Q 006636 473 QPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 473 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 523 (637)
+.-+..+-++.+..+.+.|++....+.+.+|.|.+++.-|.++++.++.+.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~ 75 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 75 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 445666667777778889999999999999999999999999999887653
No 246
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.84 E-value=8.1 Score=30.74 Aligned_cols=72 Identities=7% Similarity=0.018 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 006636 420 HPNVVIFTTIISGWCSDGS---MDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK 493 (637)
Q Consensus 420 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 493 (637)
.|+..+--.+.+++.+..+ ..+++.+++++.+.+..-....+-.|.-++.+.|++++|.++.+.+.+ ++|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 4555555555555555543 335666666666543211233445555566677777777777666665 55553
No 247
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=84.70 E-value=4.9 Score=33.47 Aligned_cols=61 Identities=11% Similarity=0.122 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006636 74 SMTKLMNSLIERGKPQEAQAIFNNLIEG-GHKPSL-------VTYTTLLAALTIQKRFNSIHSIMSQVE 134 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~ 134 (637)
.+-.-+..+...|.++.|+-+.+.+... +..|+. .++..+..++...+++..|...|++.+
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3334455666666666666665554331 112331 133444455556666666666666543
No 248
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=84.22 E-value=15 Score=29.64 Aligned_cols=71 Identities=15% Similarity=0.186 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc
Q 006636 455 SPNLKTFETLMWGYSEARQP---WRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 455 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
.|+..+--.+..++.++... .+++.+++.+.+.+..-..+..-.+.-++.+.|++++|+++.+.+....|.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 45666666666667766644 356666666654221112233334555677777777777777777776664
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.69 E-value=27 Score=39.81 Aligned_cols=148 Identities=12% Similarity=0.041 Sum_probs=100.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----C---------------
Q 006636 358 TIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIES----G--------------- 418 (637)
Q Consensus 358 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--------------- 418 (637)
.++..+...+..+.+..+.... +.+....-.++.+|..+|++++|...|.+.... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 4556667777777776654432 234555556778888999999999999764210 0
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--H--HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 006636 419 ---FHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNL--K--TFETLMWGYSEARQPWRAEEILQIMKAFGVHP 491 (637)
Q Consensus 419 ---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 491 (637)
...-..-|..++..+.++|.++.++++-+.+++....-+. . .|..+.+.+...|++++|...+-.+.+...
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 0112235677788888899999999888877754222122 2 477888899999999999998887766333
Q ss_pred CHHHHHHHHHHHHHcCCHHHH
Q 006636 492 QKSTFLLLAEARRATGLTKEA 512 (637)
Q Consensus 492 ~~~~~~~l~~~~~~~g~~~eA 512 (637)
.......++..++..|.+++=
T Consensus 970 r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhh
Confidence 355677788777877776553
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.56 E-value=38 Score=33.76 Aligned_cols=97 Identities=12% Similarity=0.078 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH-
Q 006636 389 HAYSILAKGYVREQEPEKAEELLMTMIESGF-HPN----VVIFTTIISGWCSDGSMDRAIEVFDKMCE----HGVSPNL- 458 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~- 458 (637)
.....|...|...|++.+|.+++.++...-. ..+ ...+...+..|...+++..|..+++++.. ....|+.
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 3456788999999999999999999864311 112 34566778889999999999999998742 2222222
Q ss_pred -HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006636 459 -KTFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 459 -~~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
..+...+..+.+.+++.+|...|.++.
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 346677888889999999998887764
No 251
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.11 E-value=27 Score=31.72 Aligned_cols=115 Identities=15% Similarity=0.161 Sum_probs=78.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcC
Q 006636 397 GYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK----TFETLMWGYSEAR 472 (637)
Q Consensus 397 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~g 472 (637)
...+.|++++|+.....-++.. |-|...-..++..+|-.|+++.|.+-++...+. .|+.. +|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH-----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHH-----
Confidence 4567899999999998888875 778888888999999999999999999988874 34433 34444432
Q ss_pred ChhHHHHHHHHHHHCCC-----CCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHhhhhc
Q 006636 473 QPWRAEEILQIMKAFGV-----HPQKSTFLLLAEAR--RATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 473 ~~~~A~~~~~~m~~~g~-----~p~~~~~~~l~~~~--~~~g~~~eA~~~~~~~~~~~~ 524 (637)
...-.....-+- .........++.++ ...|+.++|.++-.++.+..+
T Consensus 78 -----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap 131 (273)
T 1zbp_A 78 -----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 131 (273)
T ss_dssp -----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCc
Confidence 111122212111 12344555666665 456999999999888865543
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.92 E-value=29 Score=39.58 Aligned_cols=150 Identities=11% Similarity=0.117 Sum_probs=91.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------------------
Q 006636 112 TLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKES-------------------- 171 (637)
Q Consensus 112 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-------------------- 171 (637)
.++..+...+..+.+..+... .+.+....-.+..+|..+|++++|...|.+....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 344445555555555544332 1333333334455566666666666666543210
Q ss_pred C--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006636 172 G--LTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVK-PN--LRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKP 246 (637)
Q Consensus 172 ~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~ 246 (637)
. ...-..-|..++..+-+.+.++.++++-....+..... ++ ...|..+.+.+...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 0 01112346778888889999998888877666543111 11 12578888999999999999999988877643
Q ss_pred CHHHHHHHHHHHHHcCCHHHHH
Q 006636 247 DVVTYNTIATAYAQNGEADQAE 268 (637)
Q Consensus 247 ~~~~~~~li~~~~~~g~~~~A~ 268 (637)
-......|+...+..|..+.-.
T Consensus 970 r~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhhh
Confidence 3456667777777777765544
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=82.67 E-value=7.8 Score=32.23 Aligned_cols=108 Identities=8% Similarity=0.120 Sum_probs=73.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC-CCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------------
Q 006636 112 TLLAALTIQKRFNSIHSIMSQVEENG-MDPD-------SIFFNAVINAFSESGNMEEAMDTFWKMKES------------ 171 (637)
Q Consensus 112 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~-------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~------------ 171 (637)
.-+..+...+.++.|.-+.+.+.... ..|+ ..++..+.+++...+++..|...|++..+.
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 33566677788888887777754431 1333 135677788889999999999999884211
Q ss_pred ------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 006636 172 ------------GLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRA 222 (637)
Q Consensus 172 ------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 222 (637)
....+...-.-+..+|.+.+++++|+.+++.++... .+...-..|.+.
T Consensus 105 ~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~---Rt~kvnm~LakL 164 (167)
T 3ffl_A 105 STGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ---RTPKINMLLANL 164 (167)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG---CCHHHHHHHHHH
T ss_pred cccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh---cCHHHHHHHHHH
Confidence 122234555668889999999999999999987654 455544444443
No 254
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.11 E-value=39 Score=32.89 Aligned_cols=27 Identities=22% Similarity=0.145 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006636 284 RTCGIIISGYCKEGKIKEALRFARTMK 310 (637)
Q Consensus 284 ~~~~~li~~~~~~g~~~~A~~~~~~~~ 310 (637)
.....|...|.+.|+.++...++....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455667788888888888877776664
No 255
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=82.00 E-value=7.9 Score=28.98 Aligned_cols=61 Identities=8% Similarity=0.139 Sum_probs=36.6
Q ss_pred HhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006636 334 RDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILA 395 (637)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 395 (637)
.-++.+.++.+......|++.+..+.+.+|.+.+++..|..+++-+..+- .+...+|..++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 34455556666666666777777777777777777777777777665431 22233454444
No 256
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.38 E-value=8.7 Score=30.49 Aligned_cols=51 Identities=20% Similarity=0.288 Sum_probs=41.9
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh
Q 006636 473 QPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 473 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 523 (637)
+..+..+-++.+..+.+.|++....+.+.+|.|.+++.-|.++++-++.+.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~ 118 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 118 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 344555666666678899999999999999999999999999999987663
No 257
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=80.00 E-value=22 Score=28.68 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=9.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 006636 430 ISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~ 451 (637)
.-++.+.|++++|.++.+.+++
T Consensus 84 Avg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 84 TIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHh
Confidence 3344444444444444444444
No 258
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=78.28 E-value=69 Score=33.42 Aligned_cols=136 Identities=8% Similarity=0.100 Sum_probs=68.7
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 006636 118 TIQKRFNSIHSIMSQVEENGMDPDS-IFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEES 196 (637)
Q Consensus 118 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 196 (637)
.+.|++..+..+...+... +... ..|..|...+ ......+...++.+-... +.....-...+..+.+.+++...
T Consensus 17 ~~~~~~~~~~~l~~~l~~~--pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~--p~~~~Lr~~~l~~l~~~~~w~~~ 91 (618)
T 1qsa_A 17 WDNRQMDVVEQMMPGLKDY--PLYPYLEYRQITDDL-MNQPAVTVTNFVRANPTL--PPARTLQSRFVNELARREDWRGL 91 (618)
T ss_dssp HHTTCHHHHHHHSGGGTTS--TTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHCCCHHHHHHHHHhhcCC--CcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCCCC--hhHHHHHHHHHHHHHhCCCHHHH
Confidence 4567777666665544221 2111 1232222211 122344444444433221 11122334455666667776666
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 006636 197 VKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEAD 265 (637)
Q Consensus 197 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 265 (637)
+..+.. .+.+...-.....+....|+..+|......+-..| ...+.....|+..+.+.|.+.
T Consensus 92 l~~~~~------~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 92 LAFSPE------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQD 153 (618)
T ss_dssp HHHCCS------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSC
T ss_pred HHhccC------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCC
Confidence 554432 13455555666677777888777777666665544 234455666777776666543
No 259
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=73.43 E-value=17 Score=28.92 Aligned_cols=60 Identities=8% Similarity=0.144 Sum_probs=36.6
Q ss_pred hhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006636 335 DGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILA 395 (637)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 395 (637)
-+..+-++.+......|++.+..+.+.+|.+.+++..|..+|+-+..+- .+...+|..++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 3455555555666666777777777777777777777777777665431 23344455444
No 260
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=71.58 E-value=77 Score=30.81 Aligned_cols=158 Identities=11% Similarity=0.029 Sum_probs=80.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHH--
Q 006636 358 TIMNAWSTAGFMDKCKEIFDDMGKAGIKPD-----AHAYSILAKGYVREQEPEKAEELLMTMIES--GFHPNVVIFTT-- 428 (637)
Q Consensus 358 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~-- 428 (637)
.++..|...|++.+|..++..+.+.-...| ..++..-+.+|...+++.++...+...... .+.+++.....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 456667777777777777766654211111 234555566777778888877777665432 12233333222
Q ss_pred --HHHHHH-hcCCHHHHHHHHHHHHHC-C-C-CCC---HHHHHHHHHHHHhcCChhHHHHHHH-H-HHHCCCCCCHHHHH
Q 006636 429 --IISGWC-SDGSMDRAIEVFDKMCEH-G-V-SPN---LKTFETLMWGYSEARQPWRAEEILQ-I-MKAFGVHPQKSTFL 497 (637)
Q Consensus 429 --li~~~~-~~g~~~~A~~~~~~m~~~-~-~-~p~---~~~~~~l~~~~~~~g~~~~A~~~~~-~-m~~~g~~p~~~~~~ 497 (637)
-+..+. ..+++.+|...|-+..+. . . .|. ...|..| +..-.+...+--.++. . ...+ ..|+...+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL--~aLl~~~r~el~~~l~~~~~~~~-~~pei~~l~ 260 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL--CKIMLGQSDDVNQLVSGKLAITY-SGRDIDAMK 260 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HHHHTTCGGGHHHHHHSHHHHTT-CSHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH--HHHHcCCHHHHHHHhcccccccc-CCccHHHHH
Confidence 122345 677888887777666421 0 0 111 1122222 1222333333333322 1 1222 345555566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 006636 498 LLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 498 ~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
.++.+ .+.|++.+-..+++..
T Consensus 261 ~L~~a-~~~~dl~~f~~iL~~~ 281 (394)
T 3txn_A 261 SVAEA-SHKRSLADFQAALKEY 281 (394)
T ss_dssp HHHHH-HHTTCHHHHHHHHHHS
T ss_pred HHHHH-HHhCCHHHHHHHHHHH
Confidence 66655 3556777776666654
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.37 E-value=88 Score=30.87 Aligned_cols=60 Identities=8% Similarity=0.037 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006636 75 MTKLMNSLIERGKPQEAQAIFNNLIEG--GHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVE 134 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 134 (637)
+..+...|.+.|+++.|.+.|.++... +...-...+-.+++.+...+++..+...+.++.
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 345666666667776666666666542 222233455555666666666666666666553
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.95 E-value=53 Score=32.52 Aligned_cols=98 Identities=6% Similarity=-0.090 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHH----
Q 006636 355 TYSTIMNAWSTAGFMDKCKEIFDDMGKA--GIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESG-FHPNVVIFT---- 427 (637)
Q Consensus 355 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~---- 427 (637)
+...+...|.+.|+++.|.+.+.++... +...-...+..++..+...+++..+...+.++...- -.+|....+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 3455666677777777777777776653 222234566667777777888888877777765320 012222211
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 006636 428 TIISGWCSDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~~ 452 (637)
.-+..+...+++.+|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1122344678888888888777643
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=63.60 E-value=36 Score=30.91 Aligned_cols=53 Identities=9% Similarity=0.162 Sum_probs=29.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006636 118 TIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKES 171 (637)
Q Consensus 118 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 171 (637)
.+.|+++.++.....-++.. |.|...-..|+..+|-.|+++.|.+-++...+.
T Consensus 8 l~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34455555555555555544 455555555555555556666655555555543
No 264
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=61.77 E-value=1.1e+02 Score=28.91 Aligned_cols=23 Identities=9% Similarity=0.238 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 006636 216 YNVLVRAWCNEKNITEAWNVMHK 238 (637)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~ 238 (637)
|.++..-|.+.+++++|++++..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~ 60 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS 60 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH
Confidence 33444456666777776666543
No 265
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=60.70 E-value=78 Score=27.25 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 006636 229 ITEAWNVMHKMAASGMKPD-VVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQP 281 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 281 (637)
..++..+|..|...|+-.. ...|......+...|++.+|.++|..-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4556666666655544322 3445555555666666666666666655554444
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=59.04 E-value=87 Score=26.95 Aligned_cols=58 Identities=17% Similarity=0.093 Sum_probs=39.8
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006636 190 AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPD 247 (637)
Q Consensus 190 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~ 247 (637)
.+...++.++|..|...+--..-...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3445677777777777663334466677777777777888888888877777766553
No 267
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=55.06 E-value=63 Score=24.10 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=5.5
Q ss_pred HhcCCHHHHHHHH
Q 006636 153 SESGNMEEAMDTF 165 (637)
Q Consensus 153 ~~~g~~~~A~~~~ 165 (637)
...|++++|..+.
T Consensus 50 mNrG~Yq~Al~l~ 62 (115)
T 2uwj_G 50 ANQGRYQEALAFA 62 (115)
T ss_dssp HHTTCHHHHHGGG
T ss_pred HcchhHHHHHHhc
Confidence 3444444444433
No 268
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=54.51 E-value=65 Score=24.05 Aligned_cols=17 Identities=12% Similarity=0.198 Sum_probs=7.1
Q ss_pred HcCChhHHHHHHHHHHH
Q 006636 365 TAGFMDKCKEIFDDMGK 381 (637)
Q Consensus 365 ~~g~~~~a~~~~~~~~~ 381 (637)
+.|..+++..-+..+..
T Consensus 80 rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 80 HLGLGAALDRRLAGLGG 96 (115)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred hcccHHHHHHHHHHHHh
Confidence 34444444444434333
No 269
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=54.19 E-value=66 Score=24.04 Aligned_cols=48 Identities=17% Similarity=0.179 Sum_probs=20.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006636 152 FSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSR 205 (637)
Q Consensus 152 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 205 (637)
+...|++++|..+.+.+. .||...|.+|... +.|..+++..-+.++..
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 334444444444443332 2444444443332 34444444444444433
No 270
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=53.43 E-value=68 Score=23.97 Aligned_cols=11 Identities=9% Similarity=-0.076 Sum_probs=4.5
Q ss_pred HHcCCHhhHHH
Q 006636 329 VEIMDRDGVDE 339 (637)
Q Consensus 329 ~~~~~~~~a~~ 339 (637)
.+.|++++|..
T Consensus 51 mNrG~Yq~Al~ 61 (116)
T 2p58_C 51 MNRGDYASALQ 61 (116)
T ss_dssp HHTTCHHHHHH
T ss_pred HcchhHHHHHH
Confidence 33444444433
No 271
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=50.74 E-value=1.5e+02 Score=28.30 Aligned_cols=74 Identities=5% Similarity=0.002 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006636 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQ--PWRAEEILQIMKAFGVHPQKSTFLLL 499 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~l 499 (637)
....++.-|...|+.++|.+.++++..-... ...+...+..++-+.+. .+...+++..+.+.|+-+.......+
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf 294 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGY 294 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 3567788888888999998888887531111 12234444445544332 23456666666666655444433333
No 272
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=48.53 E-value=1.3e+02 Score=25.70 Aligned_cols=142 Identities=15% Similarity=0.038 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006636 105 PSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLI 184 (637)
Q Consensus 105 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 184 (637)
++...-...+.++...+..+ +...+..+.. .++..+-...+.++.+.++.+ +...+..+.. .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 45555555555665555533 2223333332 345555555566666665532 2233333322 24555555556
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006636 185 KGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGE 263 (637)
Q Consensus 185 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 263 (637)
.++.+.+..+ +...+..+.. .++...-...+.++.+.+..+ +...+..+.. .++..+-...+.++.+.+.
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK----DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCcHH-HHHHHHHHHh----CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 6666655533 3333333332 244444444445444444422 2333333332 2344444444444444443
No 273
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=46.36 E-value=1.9e+02 Score=27.00 Aligned_cols=81 Identities=16% Similarity=0.097 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006636 351 PDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVRE---QEPEKAEELLMTMIESGFHPNVVIFT 427 (637)
Q Consensus 351 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~ 427 (637)
-++.....+...|.+.+++.+|...|- .|-..+...+..++.-+.+. |...++-- ..-.
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dl--------------f~~R 193 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWDWLCQVDDIEDSTVAE--------------FFSR 193 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTTCCCHHHHHH--------------HHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHHHHHhcCCCCcchHHH--------------HHHH
Confidence 366777777777788888777776553 11111233444433333333 33333211 1111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 006636 428 TIISGWCSDGSMDRAIEVFDKMC 450 (637)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~ 450 (637)
. +-.|.-.|+...|..+|+...
T Consensus 194 a-VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 194 L-VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp H-HHHHHHTTBHHHHHHHHHHHH
T ss_pred H-HHHHHHhcCHHHHHHHHHHHH
Confidence 2 223556678888888877664
No 274
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=43.72 E-value=1.5e+02 Score=25.20 Aligned_cols=154 Identities=16% Similarity=0.046 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006636 351 PDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTII 430 (637)
Q Consensus 351 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 430 (637)
++...-...+.++.+.+..+ +...+..+.. .++..+-...+.++.+.+..+ +...+.++.. .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 35555555555555555533 2223333332 245555555556666665532 3333333332 45666666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 006636 431 SGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTK 510 (637)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 510 (637)
.++...|+. ++...+.++.. .|+...-...+.++...|.. ++...+..+.+ .++...-...+.++.+.|. .
T Consensus 103 ~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~ 173 (211)
T 3ltm_A 103 VALGQIGDE-RAVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-E 173 (211)
T ss_dssp HHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHhCcH-HHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-h
Confidence 666666663 34444444443 35666666667777777664 34444444432 4566666677777777775 4
Q ss_pred HHHHHHHHHhh
Q 006636 511 EAKRILSKIKN 521 (637)
Q Consensus 511 eA~~~~~~~~~ 521 (637)
++...+.++..
T Consensus 174 ~~~~~L~~~l~ 184 (211)
T 3ltm_A 174 RVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 55666655543
No 275
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=43.02 E-value=2.2e+02 Score=26.83 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=18.8
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHH
Q 006636 281 PNGRTCGIIISGYCKEGKIKEALRFA 306 (637)
Q Consensus 281 ~~~~~~~~li~~~~~~g~~~~A~~~~ 306 (637)
-|......+...|.+.+++.+|...|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 35566667777888888888877766
No 276
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=42.51 E-value=1.4e+02 Score=24.75 Aligned_cols=52 Identities=12% Similarity=0.222 Sum_probs=31.3
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 006636 442 AIEVFDKMCEHGVSPN-LKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK 493 (637)
Q Consensus 442 A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 493 (637)
+..+|..|...|+--. ...|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 5556666666554433 334556666666667777777777666666666543
No 277
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=41.86 E-value=3.2e+02 Score=28.41 Aligned_cols=395 Identities=9% Similarity=0.014 Sum_probs=189.1
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCH
Q 006636 81 SLIERGKPQEAQAIFNNLIEGGHKP-SLVTYTTLLAALTIQKRFNSIHSIMSQVEEN-GMDPDSIFFNAVINAFSESGNM 158 (637)
Q Consensus 81 ~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~ 158 (637)
...+.|++..+..+...+.. .+. .-..|..+...+ ......++...+ .+. +.+.....-..-+..+.+.+++
T Consensus 15 ~a~~~~~~~~~~~l~~~l~~--~pL~~yl~y~~l~~~l-~~~~~~ev~~Fl---~~~~~~p~~~~Lr~~~l~~l~~~~~w 88 (618)
T 1qsa_A 15 QAWDNRQMDVVEQMMPGLKD--YPLYPYLEYRQITDDL-MNQPAVTVTNFV---RANPTLPPARTLQSRFVNELARREDW 88 (618)
T ss_dssp HHHHTTCHHHHHHHSGGGTT--STTHHHHHHHHHHHTG-GGCCHHHHHHHH---HHCTTCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHHhhcC--CCcHHHHHHHHHHhCc-ccCCHHHHHHHH---HHCCCChhHHHHHHHHHHHHHhCCCH
Confidence 34567888887777666532 121 112333332221 112344433333 332 1111223345556677778888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH--HHHHH
Q 006636 159 EEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITE--AWNVM 236 (637)
Q Consensus 159 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~--A~~~~ 236 (637)
.....++.. .+.+...-.....+....|+..+|......+-..+...|+ ....++..+.+.|.+.. ...=+
T Consensus 89 ~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~--~c~~l~~~~~~~g~lt~~~~~~R~ 161 (618)
T 1qsa_A 89 RGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN--ACDKLFSVWRASGKQDPLAYLERI 161 (618)
T ss_dssp HHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT--HHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcH--HHHHHHHHHHHCCCCCHHHHHHHH
Confidence 776665543 2346666666777888889988888887777766643343 45566666665554322 22223
Q ss_pred HHHHHCCCCCCHHHHHHHHHHH-----------HH-cCCHHHHHHHHHHHHhCCCCCChhh---HHHHHHHHHhcCCHHH
Q 006636 237 HKMAASGMKPDVVTYNTIATAY-----------AQ-NGEADQAEEVIVEMEHNGVQPNGRT---CGIIISGYCKEGKIKE 301 (637)
Q Consensus 237 ~~~~~~g~~~~~~~~~~li~~~-----------~~-~g~~~~A~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~ 301 (637)
+.+...| +...-..|+... .. ..+...+...... ..++... +...+.-+.+ .+.+.
T Consensus 162 ~~al~~~---~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~rlar-~d~~~ 232 (618)
T 1qsa_A 162 RLAMKAG---NTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART-----TGATDFTRQMAAVAFASVAR-QDAEN 232 (618)
T ss_dssp HHHHHTT---CHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH-----SCCCHHHHHHHHHHHHHHHH-HCHHH
T ss_pred HHHHHCC---CHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhc-----cCCChhhHHHHHHHHHHHHh-cCHHH
Confidence 3333332 111111111110 00 0111111111110 0112111 1111222233 37788
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHH----HHcCCHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 006636 302 ALRFARTMKEYGVHPNLVIFNLLIKGF----VEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFD 377 (637)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 377 (637)
|...+....+.. ..+......+-... ...+...++...+....... .+.....-.+....+.|+++.|...|.
T Consensus 233 A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~ 309 (618)
T 1qsa_A 233 ARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLA 309 (618)
T ss_dssp HHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888876543 23333332222222 23332344555555544432 333333333333446688888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-
Q 006636 378 DMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSP- 456 (637)
Q Consensus 378 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p- 456 (637)
.|.... .......--+..++.+.|+.++|..+|..+.+. .+ |-.++. ..+.|..-. .. . ..+.+
T Consensus 310 ~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~---fYg~lA-a~~Lg~~~~-~~----~--~~~~~~ 374 (618)
T 1qsa_A 310 RLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG---FYPMVA-AQRIGEEYE-LK----I--DKAPQN 374 (618)
T ss_dssp HSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS---HHHHHH-HHHTTCCCC-CC----C--CCCCSC
T ss_pred Hccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC---hHHHHH-HHHcCCCCC-CC----C--CCCChh
Confidence 876532 123444555677778888888888888888642 22 222221 112221000 00 0 00001
Q ss_pred --CHH---HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006636 457 --NLK---TFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSK 518 (637)
Q Consensus 457 --~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~ 518 (637)
... .-..-+..+...|...+|...+..+.+. .+......+.......|..+.+.....+
T Consensus 375 ~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 375 VDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp CCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 000 1112244566778888887777776542 2333344555556677777776655543
No 278
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=41.14 E-value=1.4e+02 Score=26.55 Aligned_cols=28 Identities=14% Similarity=0.059 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006636 492 QKSTFLLLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 492 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
+.......+..+.+.|+-++|.++|-+.
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 3444445555556666666666665554
No 279
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=39.67 E-value=1.5e+02 Score=24.10 Aligned_cols=47 Identities=17% Similarity=0.137 Sum_probs=20.7
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 006636 232 AWNVMHKMAASGMKPD-VVTYNTIATAYAQNGEADQAEEVIVEMEHNG 278 (637)
Q Consensus 232 A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 278 (637)
+..+|..|...|+-.. ...|......+...|++.+|.++|..-++.+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4444444444433222 2334444444444555555555554444443
No 280
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.40 E-value=3.1e+02 Score=27.61 Aligned_cols=27 Identities=11% Similarity=0.334 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHH
Q 006636 353 VITYSTIMNAWSTAGFMDKCKEIFDDM 379 (637)
Q Consensus 353 ~~~~~~l~~~~~~~g~~~~a~~~~~~~ 379 (637)
...++.++..|...+.+++|..+..+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcC
Confidence 344555566666666666666665554
No 281
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=37.13 E-value=1.7e+02 Score=23.84 Aligned_cols=55 Identities=9% Similarity=0.118 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006636 194 EESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDV 248 (637)
Q Consensus 194 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 248 (637)
+++.++|..|...+--..-...|......+-..|++.+|.++|+.-++.+-.|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 3477788888776633445667777777788888888888888888777666643
No 282
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=36.29 E-value=1.5e+02 Score=23.28 Aligned_cols=23 Identities=9% Similarity=0.326 Sum_probs=12.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 006636 427 TTIISGWCSDGSMDRAIEVFDKM 449 (637)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~m 449 (637)
..++.-|...|+.++|.+.++++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 34455555555555555555554
No 283
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=32.80 E-value=2.4e+02 Score=24.21 Aligned_cols=17 Identities=18% Similarity=0.345 Sum_probs=8.4
Q ss_pred CCHHHHHHHHHHHHhCC
Q 006636 262 GEADQAEEVIVEMEHNG 278 (637)
Q Consensus 262 g~~~~A~~~~~~~~~~~ 278 (637)
.+.+.|+-++.+|++.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 44455555555555544
No 284
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=31.13 E-value=2.2e+02 Score=23.47 Aligned_cols=51 Identities=10% Similarity=0.156 Sum_probs=22.9
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006636 196 SVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKP 246 (637)
Q Consensus 196 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~ 246 (637)
+.++|..|...+-...-...|......+-..|++.+|.++|+.-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 344444444444222233444444444444555555555555444444333
No 285
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=30.84 E-value=3.3e+02 Score=25.31 Aligned_cols=110 Identities=11% Similarity=0.017 Sum_probs=54.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHCCCCCCHHHHHHHHHHH
Q 006636 112 TLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMD----TFWKMKESGLTPTTSTYNTLIKGY 187 (637)
Q Consensus 112 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~----~~~~m~~~~~~~~~~~~~~li~~~ 187 (637)
++..-|.+++++++|++++..-. ..+.+.|+...|-+ +.+-..+.+.+++......++..+
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34444566677777777654322 22344455444433 344445556666666666666655
Q ss_pred HhcCChH-HHHHHHHHH----HhcCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006636 188 GIAGKPE-ESVKLLDLM----SREGN-VKPNLRTYNVLVRAWCNEKNITEAWNVM 236 (637)
Q Consensus 188 ~~~g~~~-~A~~~~~~m----~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~ 236 (637)
......+ .=.++++++ .+.+. ..-+......+...|.+.+++.+|...|
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 4432111 111222222 22211 1225556666666666666666666655
No 286
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=30.22 E-value=4.1e+02 Score=26.19 Aligned_cols=35 Identities=17% Similarity=0.064 Sum_probs=17.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006636 296 EGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVE 330 (637)
Q Consensus 296 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 330 (637)
..+.+.|+..+.+|.+.|..|....-..+..+...
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~ed 302 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASED 302 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 34556666666666665544443333333333333
No 287
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=29.68 E-value=2.6e+02 Score=23.84 Aligned_cols=18 Identities=17% Similarity=0.034 Sum_probs=8.8
Q ss_pred CCHHHHHHHHHHHHhCCC
Q 006636 262 GEADQAEEVIVEMEHNGV 279 (637)
Q Consensus 262 g~~~~A~~~~~~~~~~~~ 279 (637)
.+.+.|+-++.+|++.|-
T Consensus 21 SDpDAAly~LaRMl~~GE 38 (201)
T 3bge_A 21 SAPDAALYWYARILTAGG 38 (201)
T ss_dssp TCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 444555555555554443
No 288
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=29.64 E-value=1.6e+02 Score=28.03 Aligned_cols=26 Identities=19% Similarity=0.478 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHH
Q 006636 74 SMTKLMNSLIERGKPQEAQAIFNNLI 99 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 99 (637)
....++.-|...|+.++|...++++.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 34667899999999999999999874
No 289
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=28.67 E-value=3.6e+02 Score=29.89 Aligned_cols=51 Identities=8% Similarity=0.052 Sum_probs=28.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006636 394 LAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKM 449 (637)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 449 (637)
++..+...|..+-|.++..-+ +.++..--.+..+|...|++++|...|+++
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555666666554433222 334443344556677777777777777665
No 290
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=27.30 E-value=1.5e+02 Score=24.21 Aligned_cols=23 Identities=9% Similarity=0.326 Sum_probs=12.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 006636 427 TTIISGWCSDGSMDRAIEVFDKM 449 (637)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~m 449 (637)
..++.-|...|+.++|.+.++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 34455555555555555555554
No 291
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.07 E-value=1.1e+02 Score=23.56 Aligned_cols=50 Identities=16% Similarity=0.060 Sum_probs=33.3
Q ss_pred cCCHHHHHHHHHHHhhhhccccccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhhhccccc
Q 006636 506 TGLTKEAKRILSKIKNKERTNEMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRD 582 (637)
Q Consensus 506 ~g~~~eA~~~~~~~~~~~~~~~~~~~~~~a~~~~e~~~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~~ 582 (637)
.|+.++|+.++.+- +..+++.+.++.+... .....|++|.+++..|++.-
T Consensus 35 ~g~k~~Al~lYk~G----------------I~eLe~Gl~I~~~~~~-----------~~g~~we~Ar~lq~KM~~nL 84 (116)
T 2dl1_A 35 LGQKEEAKNYYKQG----------------IGHLLRGISISSKESE-----------HTGPGWESARQMQQKMKETL 84 (116)
T ss_dssp HTCHHHHHHHHHHH----------------HHHHHHHHSSCCCCTT-----------CCCSHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH----------------HHHHHHhccccccCCC-----------CCChhHHHHHHHHHHHHHHH
Confidence 48888888887663 4456666666544211 22467999999999987543
No 292
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=25.39 E-value=1.3e+02 Score=26.36 Aligned_cols=52 Identities=17% Similarity=0.153 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006636 195 ESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKP 246 (637)
Q Consensus 195 ~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~ 246 (637)
.+.++|..|...+--..-...|......+-..|++.+|..+|+.-++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4445555555444222234445555555555555555555555555444333
No 293
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.39 E-value=3e+02 Score=22.65 Aligned_cols=55 Identities=2% Similarity=-0.155 Sum_probs=39.6
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHHcCCHHHHHHHHHHHhhh
Q 006636 468 YSEARQPWRAEEILQIMKAFGVHP--QKSTFLLLAE-A-----RRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 468 ~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~-~-----~~~~g~~~eA~~~~~~~~~~ 522 (637)
+...|++-+|-++|+..-...-.| +...|..|+. + ..+.|+..-|.+++.+....
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 445599999999999886544445 4456666666 2 34679999999999998765
No 294
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=24.09 E-value=3.5e+02 Score=23.36 Aligned_cols=21 Identities=24% Similarity=0.378 Sum_probs=11.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCC
Q 006636 262 GEADQAEEVIVEMEHNGVQPN 282 (637)
Q Consensus 262 g~~~~A~~~~~~~~~~~~~~~ 282 (637)
.+.+.|+-++.+|++.|-.|.
T Consensus 49 SDpDAALywLaRMl~~GEDp~ 69 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGEDPN 69 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCCHH
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 455555555555555554333
No 295
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=23.99 E-value=3.4e+02 Score=23.18 Aligned_cols=38 Identities=21% Similarity=0.352 Sum_probs=24.4
Q ss_pred HHHHHH---HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006636 78 LMNSLI---ERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLA 115 (637)
Q Consensus 78 l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 115 (637)
+|+++. +-++++.|+-.+-+|++.|-.|.-..-..++-
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~ 50 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAI 50 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 456654 45788888888888888775554433333333
No 296
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=23.74 E-value=1.7e+02 Score=25.39 Aligned_cols=16 Identities=13% Similarity=0.451 Sum_probs=6.7
Q ss_pred hcCChhHHHHHHHHHH
Q 006636 119 IQKRFNSIHSIMSQVE 134 (637)
Q Consensus 119 ~~~~~~~a~~~~~~~~ 134 (637)
..|+.+.+..+++.+.
T Consensus 18 ~~g~~~~v~~Ll~~~~ 33 (241)
T 1k1a_A 18 VQGNLPAVHRLVNLFQ 33 (241)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 3444444444444333
No 297
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.66 E-value=1.9e+02 Score=20.14 Aligned_cols=60 Identities=13% Similarity=0.183 Sum_probs=36.9
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006636 448 KMCEHGVSPNLKTFETLMWGYSEAR-QPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGL 508 (637)
Q Consensus 448 ~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 508 (637)
.+.+.|++.+..-. .++..+...+ ..-.+.++++.+.+.+...+..|....++.+...|.
T Consensus 7 ~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34566766665443 3445554443 455677777777666656666776666777766664
No 298
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=22.71 E-value=2.4e+02 Score=20.90 Aligned_cols=55 Identities=13% Similarity=0.033 Sum_probs=31.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH-----HHCCCCCCHHHHHH
Q 006636 442 AIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIM-----KAFGVHPQKSTFLL 498 (637)
Q Consensus 442 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m-----~~~g~~p~~~~~~~ 498 (637)
|.++.++....|+.|+..+..-++..|...+. + +.++.++. ...|..|+.+....
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~ 87 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNS 87 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 45566666666777777777777777766554 1 33322221 24566666655443
No 299
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=22.51 E-value=3.4e+02 Score=22.66 Aligned_cols=22 Identities=5% Similarity=-0.238 Sum_probs=13.6
Q ss_pred cccccCCCchhhhhhhhccccc
Q 006636 561 VVSSDQKGSAAALKKGRMLLRD 582 (637)
Q Consensus 561 ~y~~~g~~~~a~~~r~~~~~~~ 582 (637)
-|...|..|+..++....+.+.
T Consensus 217 ~yf~lg~~d~s~~lf~~lR~kD 238 (242)
T 3kae_A 217 RYFNLGMNDKSKACFELVRRKD 238 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHhcccchhHHHHHHHHHhcC
Confidence 4566677777766665555444
No 300
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=21.71 E-value=1.1e+02 Score=27.47 Aligned_cols=11 Identities=0% Similarity=0.087 Sum_probs=5.2
Q ss_pred HHHHHHcCChh
Q 006636 79 MNSLIERGKPQ 89 (637)
Q Consensus 79 ~~~~~~~g~~~ 89 (637)
+...++.|+.+
T Consensus 9 L~~A~~~g~~~ 19 (285)
T 1wdy_A 9 LIKAVQNEDVD 19 (285)
T ss_dssp HHHHHHTTCHH
T ss_pred HHHHHHcCCHH
Confidence 34444555543
No 301
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.58 E-value=2.5e+02 Score=23.06 Aligned_cols=53 Identities=9% Similarity=0.028 Sum_probs=33.2
Q ss_pred HHcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHhcCChhHHHHHHHHHHH
Q 006636 83 IERGKPQEAQAIFNNLIEGGHKP--SLVTYTTLLA-A-----LTIQKRFNSIHSIMSQVEE 135 (637)
Q Consensus 83 ~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~ll~-~-----~~~~~~~~~a~~~~~~~~~ 135 (637)
...|++-+|-++|+.+-.....+ ....|..||. . ..+.|+...|..++.+...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34588888888888887654344 3445555555 2 1345677777777766544
No 302
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=20.86 E-value=1.2e+02 Score=26.49 Aligned_cols=48 Identities=15% Similarity=0.140 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 006636 475 WRAEEILQIMKAFGVHPQK-STFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 475 ~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
+++.++|..|...||.-.. ..|......+...|++.+|..+++.-..+
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3555566666555555442 34555556666666666666666655443
No 303
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=20.69 E-value=51 Score=21.84 Aligned_cols=21 Identities=10% Similarity=0.180 Sum_probs=11.1
Q ss_pred ChHHHHHHHHHHHhcCCCCCC
Q 006636 192 KPEESVKLLDLMSREGNVKPN 212 (637)
Q Consensus 192 ~~~~A~~~~~~m~~~~~~~~~ 212 (637)
+++.|...|.++...+.+||+
T Consensus 35 d~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 35 DYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp CHHHHHHHHHHHHHTTCSCGG
T ss_pred CHHHHHHHHHHHHHcCCCCHH
Confidence 455555555555555445443
No 304
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=20.53 E-value=18 Score=17.60 Aligned_cols=17 Identities=24% Similarity=0.161 Sum_probs=13.0
Q ss_pred cCCCchhhhhhhhcccc
Q 006636 565 DQKGSAAALKKGRMLLR 581 (637)
Q Consensus 565 ~g~~~~a~~~r~~~~~~ 581 (637)
..+++.|+.+|..|.++
T Consensus 3 mnrydqaatlrakmekr 19 (23)
T 3syn_E 3 MNRYDQAATLRAKMEKR 19 (26)
T ss_pred cchHHHHHHHHHHHHHH
Confidence 46788899888887654
No 305
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=20.46 E-value=3.5e+02 Score=25.03 Aligned_cols=67 Identities=6% Similarity=0.073 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCH
Q 006636 426 FTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQ--PWRAEEILQIMKAFGVHPQK 493 (637)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 493 (637)
...++.-|...|+.++|.+.++++..-... ...+...+..++-+.+. .+....++..+.+.|+-+..
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 456777788888888888888877421111 11233333434433322 23344556666554544433
No 306
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.44 E-value=3.3e+02 Score=21.68 Aligned_cols=60 Identities=15% Similarity=0.087 Sum_probs=40.5
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006636 448 KMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGL 508 (637)
Q Consensus 448 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 508 (637)
.+.+.|++++..=. .++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|.
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 45567777666533 3444455566667788888888776666677777677777777775
Done!