Query 006637
Match_columns 637
No_of_seqs 123 out of 140
Neff 3.6
Searched_HMMs 46136
Date Thu Mar 28 12:18:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006637.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006637hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09787 Golgin_A5: Golgin sub 100.0 3.5E-27 7.6E-32 256.2 28.8 230 371-605 228-511 (511)
2 KOG4677 Golgi integral membran 100.0 5.1E-26 1.1E-30 241.5 30.0 265 345-617 215-553 (554)
3 PF08172 CASP_C: CASP C termin 99.6 2.4E-15 5.1E-20 152.2 15.3 129 484-619 95-246 (248)
4 KOG0963 Transcription factor/C 99.2 6.1E-08 1.3E-12 108.2 32.4 74 546-622 551-626 (629)
5 TIGR02169 SMC_prok_A chromosom 97.9 0.05 1.1E-06 64.0 36.2 10 92-101 33-42 (1164)
6 TIGR02168 SMC_prok_B chromosom 97.9 0.061 1.3E-06 62.9 35.5 28 450-477 862-889 (1179)
7 TIGR02169 SMC_prok_A chromosom 97.9 0.086 1.9E-06 62.1 35.9 9 619-627 642-650 (1164)
8 COG1196 Smc Chromosome segrega 97.6 0.13 2.8E-06 62.7 32.4 223 301-523 685-925 (1163)
9 PF00261 Tropomyosin: Tropomyo 97.5 0.031 6.6E-07 56.5 22.5 157 351-523 47-210 (237)
10 PF10174 Cast: RIM-binding pro 97.5 0.057 1.2E-06 63.6 26.8 130 386-524 228-357 (775)
11 KOG1029 Endocytic adaptor prot 97.4 0.12 2.6E-06 60.7 28.2 125 396-522 437-589 (1118)
12 KOG0161 Myosin class II heavy 97.4 0.15 3.3E-06 64.9 30.3 190 310-523 837-1026(1930)
13 KOG0994 Extracellular matrix g 97.3 0.12 2.6E-06 62.7 27.0 55 470-524 1691-1745(1758)
14 KOG1029 Endocytic adaptor prot 97.3 0.39 8.4E-06 56.7 29.9 26 485-510 566-591 (1118)
15 COG1196 Smc Chromosome segrega 97.2 0.58 1.2E-05 57.2 32.8 105 305-417 682-786 (1163)
16 KOG0161 Myosin class II heavy 97.2 0.51 1.1E-05 60.5 32.4 122 301-422 1288-1419(1930)
17 PRK02224 chromosome segregatio 97.0 1.1 2.5E-05 52.4 31.9 50 356-405 525-574 (880)
18 PHA02562 46 endonuclease subun 97.0 0.84 1.8E-05 50.4 29.3 67 347-413 213-279 (562)
19 KOG1937 Uncharacterized conser 96.8 0.39 8.4E-06 53.8 23.4 167 353-523 247-423 (521)
20 PRK11637 AmiB activator; Provi 96.8 0.47 1E-05 51.6 24.2 15 599-613 363-377 (428)
21 TIGR00606 rad50 rad50. This fa 96.8 1.2 2.6E-05 55.3 30.2 114 366-479 879-1009(1311)
22 PRK04863 mukB cell division pr 96.7 1.4 3.1E-05 55.6 30.3 82 447-528 397-481 (1486)
23 KOG0250 DNA repair protein RAD 96.6 2.7 5.8E-05 51.4 29.9 156 366-523 293-456 (1074)
24 PRK09039 hypothetical protein; 96.5 0.44 9.4E-06 51.2 21.3 24 304-327 46-69 (343)
25 PHA02562 46 endonuclease subun 96.5 1.3 2.8E-05 49.0 25.3 12 380-391 253-264 (562)
26 PF09726 Macoilin: Transmembra 96.5 1.6 3.4E-05 51.4 26.8 28 496-523 622-649 (697)
27 PRK02224 chromosome segregatio 96.3 3.2 7E-05 48.8 33.0 54 369-422 252-305 (880)
28 PRK09039 hypothetical protein; 96.2 1.2 2.5E-05 48.0 22.2 65 445-516 121-185 (343)
29 KOG0612 Rho-associated, coiled 96.2 5.2 0.00011 49.7 30.7 73 447-520 623-698 (1317)
30 PF09726 Macoilin: Transmembra 96.2 1.8 3.8E-05 51.0 25.2 30 485-514 625-654 (697)
31 PF10174 Cast: RIM-binding pro 96.1 4.4 9.6E-05 48.4 28.7 169 348-523 288-485 (775)
32 PF07888 CALCOCO1: Calcium bin 96.1 2.2 4.7E-05 49.0 24.7 35 444-478 280-314 (546)
33 KOG0977 Nuclear envelope prote 96.0 0.25 5.4E-06 56.3 16.6 125 378-502 88-217 (546)
34 TIGR00606 rad50 rad50. This fa 95.9 7.4 0.00016 48.6 33.1 76 306-387 787-862 (1311)
35 KOG4643 Uncharacterized coiled 95.9 0.68 1.5E-05 55.9 19.9 154 370-524 172-343 (1195)
36 KOG0971 Microtubule-associated 95.8 4 8.7E-05 49.4 25.6 149 330-478 259-441 (1243)
37 KOG0980 Actin-binding protein 95.8 5.7 0.00012 47.9 26.7 32 490-521 527-561 (980)
38 PRK03918 chromosome segregatio 95.6 6.3 0.00014 46.2 31.7 33 296-328 161-193 (880)
39 KOG4643 Uncharacterized coiled 95.6 8 0.00017 47.4 28.6 151 372-523 405-598 (1195)
40 PF05667 DUF812: Protein of un 95.6 5.7 0.00012 46.1 25.8 74 445-523 452-525 (594)
41 TIGR01843 type_I_hlyD type I s 95.6 1.9 4E-05 45.4 20.1 32 446-477 202-233 (423)
42 KOG0996 Structural maintenance 95.4 10 0.00022 47.1 27.4 32 586-617 1133-1164(1293)
43 PF10168 Nup88: Nuclear pore c 95.3 3 6.5E-05 49.3 22.6 156 356-515 553-711 (717)
44 COG1579 Zn-ribbon protein, pos 95.3 2.7 5.9E-05 43.7 19.8 92 386-477 42-133 (239)
45 TIGR02680 conserved hypothetic 95.3 12 0.00026 47.1 32.2 40 282-322 735-774 (1353)
46 PF07888 CALCOCO1: Calcium bin 95.2 7.8 0.00017 44.7 32.1 70 314-384 167-236 (546)
47 KOG4674 Uncharacterized conser 95.0 17 0.00036 47.3 29.7 71 346-423 1228-1298(1822)
48 PF05701 WEMBL: Weak chloropla 94.8 9.2 0.0002 43.4 30.0 38 291-328 152-189 (522)
49 PF05701 WEMBL: Weak chloropla 94.7 9.8 0.00021 43.2 31.5 24 564-587 480-503 (522)
50 PRK11281 hypothetical protein; 94.7 16 0.00034 45.5 30.1 32 492-523 288-319 (1113)
51 COG1579 Zn-ribbon protein, pos 94.7 4.7 0.0001 42.1 19.5 102 376-477 25-126 (239)
52 PRK10929 putative mechanosensi 94.6 16 0.00035 45.4 27.9 32 492-523 268-299 (1109)
53 PF09755 DUF2046: Uncharacteri 94.6 8.1 0.00017 41.8 29.4 62 453-521 141-203 (310)
54 KOG0250 DNA repair protein RAD 94.6 16 0.00035 45.1 28.1 203 304-516 221-428 (1074)
55 KOG0612 Rho-associated, coiled 94.3 19 0.00041 45.1 26.1 12 596-607 905-916 (1317)
56 PF12718 Tropomyosin_1: Tropom 94.3 5.2 0.00011 38.3 19.2 55 364-418 10-64 (143)
57 KOG0996 Structural maintenance 94.2 20 0.00043 44.8 32.1 156 362-517 385-556 (1293)
58 PF11559 ADIP: Afadin- and alp 94.2 5.1 0.00011 37.8 18.0 115 345-478 36-150 (151)
59 PRK11637 AmiB activator; Provi 94.2 11 0.00023 41.4 28.3 29 378-406 85-113 (428)
60 KOG0980 Actin-binding protein 93.9 18 0.00039 43.9 24.2 204 307-515 329-541 (980)
61 KOG0971 Microtubule-associated 93.6 23 0.00051 43.3 29.7 50 473-522 495-544 (1243)
62 PF09755 DUF2046: Uncharacteri 93.5 13 0.00029 40.2 21.4 64 458-521 110-174 (310)
63 KOG0994 Extracellular matrix g 93.5 28 0.0006 43.8 27.6 98 306-404 1527-1634(1758)
64 PF04156 IncA: IncA protein; 93.2 7.2 0.00016 37.7 16.7 42 372-413 78-119 (191)
65 PF13851 GAS: Growth-arrest sp 92.9 11 0.00025 37.8 22.4 150 358-513 17-174 (201)
66 KOG1003 Actin filament-coating 92.9 13 0.00028 38.2 21.3 151 364-523 21-178 (205)
67 TIGR02680 conserved hypothetic 92.8 35 0.00077 43.2 26.4 75 445-522 887-961 (1353)
68 PF14915 CCDC144C: CCDC144C pr 92.8 10 0.00023 40.8 18.4 144 379-528 53-204 (305)
69 PF08317 Spc7: Spc7 kinetochor 92.8 15 0.00034 39.0 20.2 18 304-321 82-99 (325)
70 KOG0982 Centrosomal protein Nu 92.6 22 0.00047 40.3 25.4 67 346-422 271-337 (502)
71 PRK11281 hypothetical protein; 92.6 16 0.00035 45.5 22.2 113 366-478 119-251 (1113)
72 COG4942 Membrane-bound metallo 92.6 21 0.00046 40.1 24.2 40 373-412 71-110 (420)
73 PF12128 DUF3584: Protein of u 92.4 37 0.0008 42.4 32.4 18 177-194 555-572 (1201)
74 PRK04863 mukB cell division pr 92.3 44 0.00095 43.0 36.9 22 307-328 317-338 (1486)
75 TIGR01843 type_I_hlyD type I s 92.2 17 0.00037 38.3 23.4 18 505-522 248-265 (423)
76 PF14662 CCDC155: Coiled-coil 92.1 15 0.00033 37.4 20.8 62 446-507 94-155 (193)
77 KOG4807 F-actin binding protei 92.0 25 0.00054 39.6 23.7 23 442-464 514-536 (593)
78 TIGR01005 eps_transp_fam exopo 91.6 33 0.00071 40.2 27.3 31 396-426 288-318 (754)
79 KOG0933 Structural maintenance 91.6 43 0.00094 41.5 28.8 116 361-478 741-860 (1174)
80 PF06818 Fez1: Fez1; InterPro 91.5 16 0.00034 37.5 17.2 92 388-479 2-105 (202)
81 KOG0977 Nuclear envelope prote 91.3 34 0.00073 39.8 28.4 104 311-415 113-216 (546)
82 PF05622 HOOK: HOOK protein; 91.2 0.06 1.3E-06 62.2 0.0 109 304-416 301-411 (713)
83 PF14662 CCDC155: Coiled-coil 91.2 19 0.00041 36.7 18.6 43 435-477 62-104 (193)
84 PF00769 ERM: Ezrin/radixin/mo 91.2 8.7 0.00019 39.7 15.4 47 372-418 9-55 (246)
85 TIGR01005 eps_transp_fam exopo 90.9 24 0.00051 41.3 20.2 13 294-306 168-180 (754)
86 PF07926 TPR_MLP1_2: TPR/MLP1/ 90.5 15 0.00033 34.3 16.3 36 487-522 96-131 (132)
87 PF10234 Cluap1: Clusterin-ass 90.2 16 0.00035 38.8 16.5 117 333-452 117-237 (267)
88 TIGR03007 pepcterm_ChnLen poly 90.1 34 0.00074 37.8 26.7 24 400-423 251-274 (498)
89 KOG0963 Transcription factor/C 90.0 46 0.001 39.2 25.2 38 444-481 307-344 (629)
90 PF09730 BicD: Microtubule-ass 90.0 16 0.00035 43.5 17.9 57 367-423 33-89 (717)
91 PF00038 Filament: Intermediat 89.9 26 0.00057 36.2 29.8 38 485-522 265-302 (312)
92 KOG1853 LIS1-interacting prote 89.6 28 0.0006 37.3 17.5 27 452-478 162-188 (333)
93 PF12128 DUF3584: Protein of u 89.6 65 0.0014 40.3 33.8 24 458-481 439-462 (1201)
94 KOG0976 Rho/Rac1-interacting s 89.5 60 0.0013 39.7 27.7 127 373-499 321-476 (1265)
95 PF00769 ERM: Ezrin/radixin/mo 89.3 10 0.00022 39.3 14.1 59 363-421 7-65 (246)
96 TIGR01010 BexC_CtrB_KpsE polys 89.3 33 0.00073 36.5 23.1 66 456-521 216-296 (362)
97 PF10473 CENP-F_leu_zip: Leuci 89.1 21 0.00045 34.7 15.1 26 393-418 14-39 (140)
98 PF00038 Filament: Intermediat 89.1 30 0.00066 35.8 31.9 67 351-417 72-138 (312)
99 KOG0964 Structural maintenance 88.9 71 0.0015 39.7 30.3 119 300-426 190-323 (1200)
100 PF04012 PspA_IM30: PspA/IM30 88.5 22 0.00047 35.3 15.4 53 371-423 26-78 (221)
101 PF05911 DUF869: Plant protein 88.4 66 0.0014 38.9 21.6 55 363-417 591-645 (769)
102 PF14992 TMCO5: TMCO5 family 88.4 35 0.00075 36.7 17.4 32 303-334 24-55 (280)
103 PRK03918 chromosome segregatio 88.3 60 0.0013 38.3 37.4 63 464-528 368-430 (880)
104 TIGR03007 pepcterm_ChnLen poly 88.2 44 0.00096 36.9 19.0 55 367-421 167-229 (498)
105 PRK10884 SH3 domain-containing 88.1 8.4 0.00018 39.2 12.3 26 366-391 91-116 (206)
106 KOG4673 Transcription factor T 88.1 68 0.0015 38.6 27.0 80 445-524 535-626 (961)
107 PF04111 APG6: Autophagy prote 88.0 11 0.00024 40.3 13.7 39 486-524 96-134 (314)
108 PF15619 Lebercilin: Ciliary p 88.0 32 0.0007 34.7 16.9 67 440-506 68-142 (194)
109 PF10186 Atg14: UV radiation r 87.5 34 0.00074 34.5 17.7 12 600-611 262-273 (302)
110 PRK10246 exonuclease subunit S 87.4 83 0.0018 38.9 32.2 82 440-521 777-861 (1047)
111 PF04849 HAP1_N: HAP1 N-termin 87.4 48 0.001 36.0 17.9 30 491-520 236-265 (306)
112 PF04111 APG6: Autophagy prote 87.0 6.3 0.00014 42.1 11.2 36 493-528 96-131 (314)
113 PF15254 CCDC14: Coiled-coil d 86.9 48 0.001 40.1 18.9 64 435-503 489-553 (861)
114 PF06818 Fez1: Fez1; InterPro 86.6 41 0.0009 34.6 18.7 91 332-422 16-106 (202)
115 KOG0249 LAR-interacting protei 86.2 68 0.0015 38.7 19.4 24 369-392 168-191 (916)
116 KOG0999 Microtubule-associated 86.2 78 0.0017 37.3 26.8 193 316-521 41-254 (772)
117 PF07926 TPR_MLP1_2: TPR/MLP1/ 86.1 30 0.00064 32.4 17.6 45 372-416 28-72 (132)
118 KOG0964 Structural maintenance 86.0 1E+02 0.0022 38.5 28.1 99 304-405 258-365 (1200)
119 COG3524 KpsE Capsule polysacch 85.7 29 0.00062 38.1 15.1 156 448-613 180-365 (372)
120 PF15066 CAGE1: Cancer-associa 85.6 75 0.0016 36.6 20.7 118 305-431 325-447 (527)
121 TIGR02977 phageshock_pspA phag 85.5 39 0.00084 34.1 15.4 102 373-474 29-133 (219)
122 PF08614 ATG16: Autophagy prot 85.1 8.5 0.00018 38.0 10.4 12 311-322 74-85 (194)
123 KOG0933 Structural maintenance 85.0 1.1E+02 0.0025 38.1 26.9 14 618-631 647-660 (1174)
124 PF15070 GOLGA2L5: Putative go 84.2 95 0.0021 36.6 30.8 18 506-523 282-299 (617)
125 PF04094 DUF390: Protein of un 84.2 1.1E+02 0.0023 37.1 20.5 34 484-517 640-673 (828)
126 PF05335 DUF745: Protein of un 84.2 51 0.0011 33.4 19.4 121 292-423 45-171 (188)
127 PF05622 HOOK: HOOK protein; 84.1 0.32 6.9E-06 56.5 0.0 35 371-405 249-283 (713)
128 PF07106 TBPIP: Tat binding pr 84.1 14 0.0003 35.6 11.1 61 445-510 77-137 (169)
129 KOG0249 LAR-interacting protei 83.9 69 0.0015 38.7 18.1 59 352-410 200-258 (916)
130 PF15070 GOLGA2L5: Putative go 83.9 98 0.0021 36.5 29.5 141 365-522 171-312 (617)
131 KOG4673 Transcription factor T 83.8 1.1E+02 0.0024 37.0 32.9 35 489-523 725-759 (961)
132 PF12718 Tropomyosin_1: Tropom 83.7 43 0.00093 32.2 19.1 116 303-423 20-135 (143)
133 PF15035 Rootletin: Ciliary ro 83.6 51 0.0011 33.0 16.2 109 369-477 3-132 (182)
134 PF04156 IncA: IncA protein; 83.3 46 0.00099 32.2 15.7 67 352-418 114-180 (191)
135 PF01576 Myosin_tail_1: Myosin 83.2 0.36 7.9E-06 57.5 0.0 222 302-523 480-727 (859)
136 smart00787 Spc7 Spc7 kinetocho 83.0 51 0.0011 35.6 15.8 22 301-322 74-95 (312)
137 KOG4572 Predicted DNA-binding 82.8 1.3E+02 0.0028 37.1 23.7 153 311-474 887-1044(1424)
138 PF12252 SidE: Dot/Icm substra 82.7 1.4E+02 0.003 37.8 20.4 157 352-516 1005-1192(1439)
139 PRK10884 SH3 domain-containing 82.7 21 0.00046 36.4 12.2 29 373-401 137-165 (206)
140 PF00261 Tropomyosin: Tropomyo 81.9 64 0.0014 32.9 27.3 55 364-418 81-135 (237)
141 PF10212 TTKRSYEDQ: Predicted 81.8 36 0.00078 39.3 14.7 32 485-516 483-514 (518)
142 PF05384 DegS: Sensor protein 81.7 53 0.0011 32.5 14.1 113 384-496 29-147 (159)
143 PF08317 Spc7: Spc7 kinetochor 81.2 82 0.0018 33.7 25.3 32 493-524 234-265 (325)
144 PRK09841 cryptic autophosphory 80.9 1.2E+02 0.0025 36.0 19.0 28 391-418 269-296 (726)
145 TIGR01000 bacteriocin_acc bact 80.9 97 0.0021 34.4 24.5 38 486-523 273-311 (457)
146 PF10473 CENP-F_leu_zip: Leuci 80.8 36 0.00077 33.1 12.4 32 492-523 83-114 (140)
147 PF04849 HAP1_N: HAP1 N-termin 80.8 91 0.002 34.0 23.9 65 444-508 231-302 (306)
148 PF10186 Atg14: UV radiation r 80.6 68 0.0015 32.4 17.3 19 486-504 130-148 (302)
149 PF13514 AAA_27: AAA domain 80.4 1.6E+02 0.0035 36.6 31.1 29 359-387 741-769 (1111)
150 PF09730 BicD: Microtubule-ass 80.1 1.5E+02 0.0031 35.9 19.9 75 445-521 95-181 (717)
151 PF01576 Myosin_tail_1: Myosin 79.9 0.57 1.2E-05 55.9 0.0 53 455-507 258-310 (859)
152 PF09304 Cortex-I_coil: Cortex 79.8 55 0.0012 30.8 14.6 61 358-418 6-66 (107)
153 PF05557 MAD: Mitotic checkpoi 79.7 0.57 1.2E-05 54.4 0.0 32 488-523 287-318 (722)
154 PF09311 Rab5-bind: Rabaptin-l 79.3 3.6 7.9E-05 40.5 5.4 80 341-420 2-81 (181)
155 COG4026 Uncharacterized protei 78.9 15 0.00032 38.7 9.7 41 378-418 131-171 (290)
156 KOG4674 Uncharacterized conser 78.5 2.4E+02 0.0052 37.5 33.9 154 369-522 718-884 (1822)
157 KOG0995 Centromere-associated 77.9 1.5E+02 0.0033 34.9 19.1 38 571-608 516-558 (581)
158 smart00787 Spc7 Spc7 kinetocho 77.8 1.1E+02 0.0023 33.1 17.4 10 294-303 51-60 (312)
159 PF10481 CENP-F_N: Cenp-F N-te 77.8 1.1E+02 0.0024 33.2 19.5 17 483-499 156-172 (307)
160 PF14257 DUF4349: Domain of un 77.6 56 0.0012 33.5 13.5 58 452-516 130-189 (262)
161 KOG4460 Nuclear pore complex, 77.3 1.6E+02 0.0035 34.8 22.1 135 360-499 569-719 (741)
162 COG1842 PspA Phage shock prote 77.1 96 0.0021 32.1 19.0 84 332-421 62-145 (225)
163 COG2433 Uncharacterized conser 76.1 38 0.00082 39.9 12.8 89 376-477 416-504 (652)
164 PF13851 GAS: Growth-arrest sp 76.0 93 0.002 31.4 22.9 108 393-508 90-201 (201)
165 PF12325 TMF_TATA_bd: TATA ele 75.8 73 0.0016 30.2 13.8 31 485-515 78-108 (120)
166 PF11559 ADIP: Afadin- and alp 75.6 74 0.0016 30.1 17.4 19 438-456 131-149 (151)
167 PF05667 DUF812: Protein of un 75.5 1.7E+02 0.0038 34.4 25.8 31 382-412 394-424 (594)
168 KOG0288 WD40 repeat protein Ti 74.8 1.3E+02 0.0027 34.4 15.9 58 365-422 10-67 (459)
169 PF09789 DUF2353: Uncharacteri 74.8 36 0.00079 37.1 11.7 41 380-420 14-54 (319)
170 KOG4807 F-actin binding protei 74.2 1.7E+02 0.0036 33.5 18.7 63 447-522 466-538 (593)
171 PF11180 DUF2968: Protein of u 73.9 55 0.0012 33.5 12.0 85 432-530 97-181 (192)
172 PF10481 CENP-F_N: Cenp-F N-te 73.3 77 0.0017 34.3 13.3 72 446-524 59-130 (307)
173 PF06120 Phage_HK97_TLTM: Tail 72.6 1.2E+02 0.0027 32.9 14.9 46 376-421 68-113 (301)
174 PF10146 zf-C4H2: Zinc finger- 72.4 1.3E+02 0.0028 31.4 14.9 26 398-423 3-28 (230)
175 PF06637 PV-1: PV-1 protein (P 71.2 58 0.0012 36.7 12.2 45 333-377 296-340 (442)
176 KOG0979 Structural maintenance 70.8 2.9E+02 0.0062 34.8 21.2 171 345-523 164-345 (1072)
177 PRK15178 Vi polysaccharide exp 70.5 2E+02 0.0043 32.8 22.5 82 397-478 243-338 (434)
178 KOG0018 Structural maintenance 70.4 3E+02 0.0065 34.8 27.9 57 350-406 230-286 (1141)
179 COG0419 SbcC ATPase involved i 70.2 2.6E+02 0.0056 34.0 33.0 57 465-521 386-442 (908)
180 PF02841 GBP_C: Guanylate-bind 70.1 88 0.0019 32.9 13.0 60 364-423 179-238 (297)
181 KOG0804 Cytoplasmic Zn-finger 70.1 2.1E+02 0.0046 33.0 16.9 41 485-525 417-457 (493)
182 TIGR03017 EpsF chain length de 69.7 1.7E+02 0.0037 31.8 26.7 30 397-426 255-284 (444)
183 KOG1853 LIS1-interacting prote 69.5 1.7E+02 0.0037 31.7 19.7 66 446-516 97-163 (333)
184 TIGR01010 BexC_CtrB_KpsE polys 69.0 1.7E+02 0.0036 31.3 21.3 20 398-417 216-235 (362)
185 PF10212 TTKRSYEDQ: Predicted 68.7 88 0.0019 36.3 13.4 86 390-475 421-515 (518)
186 PF05557 MAD: Mitotic checkpoi 68.1 5.4 0.00012 46.6 4.1 21 502-522 516-536 (722)
187 PF12795 MscS_porin: Mechanose 67.8 1.5E+02 0.0032 30.2 19.7 54 370-423 80-133 (240)
188 PRK10698 phage shock protein P 67.6 1.5E+02 0.0033 30.3 15.4 36 383-418 39-74 (222)
189 PRK11519 tyrosine kinase; Prov 67.2 2.7E+02 0.0058 33.1 18.7 15 43-57 11-25 (719)
190 PF07111 HCR: Alpha helical co 67.2 2.9E+02 0.0063 33.5 28.3 117 287-409 309-435 (739)
191 PF10146 zf-C4H2: Zinc finger- 67.0 1.7E+02 0.0036 30.6 14.2 77 393-478 29-106 (230)
192 PF12761 End3: Actin cytoskele 66.9 92 0.002 32.0 11.9 88 371-474 99-194 (195)
193 TIGR03185 DNA_S_dndD DNA sulfu 66.3 2.6E+02 0.0057 32.6 30.6 26 397-422 392-417 (650)
194 KOG0962 DNA repair protein RAD 66.2 3.9E+02 0.0084 34.5 28.9 37 291-327 848-884 (1294)
195 PRK10698 phage shock protein P 66.2 1.6E+02 0.0035 30.2 22.2 57 366-422 90-146 (222)
196 TIGR03017 EpsF chain length de 65.7 2.1E+02 0.0045 31.2 21.0 24 498-521 337-360 (444)
197 COG1842 PspA Phage shock prote 65.6 1.7E+02 0.0038 30.3 15.1 7 400-406 56-62 (225)
198 PTZ00121 MAEBL; Provisional 65.5 4.4E+02 0.0095 34.9 25.8 16 93-108 885-900 (2084)
199 PF05911 DUF869: Plant protein 65.3 3.2E+02 0.007 33.3 24.9 69 361-429 85-153 (769)
200 KOG0804 Cytoplasmic Zn-finger 63.8 2.8E+02 0.0061 32.1 15.8 65 314-383 347-411 (493)
201 PF10267 Tmemb_cc2: Predicted 63.7 2.6E+02 0.0056 31.6 15.7 32 373-404 53-84 (395)
202 COG2433 Uncharacterized conser 63.5 68 0.0015 38.0 11.3 31 486-516 478-508 (652)
203 PF04582 Reo_sigmaC: Reovirus 63.2 6.8 0.00015 42.6 3.4 71 446-523 76-146 (326)
204 PF12777 MT: Microtubule-bindi 63.1 2.2E+02 0.0048 30.7 20.5 76 448-523 229-304 (344)
205 PF13514 AAA_27: AAA domain 62.7 3.9E+02 0.0084 33.3 32.1 44 480-523 449-493 (1111)
206 KOG0976 Rho/Rac1-interacting s 62.7 3.9E+02 0.0084 33.3 30.1 16 463-478 388-403 (1265)
207 TIGR02977 phageshock_pspA phag 62.6 1.8E+02 0.0039 29.4 22.4 58 366-423 90-147 (219)
208 PF11932 DUF3450: Protein of u 62.6 1.9E+02 0.0041 29.7 18.5 61 362-422 36-96 (251)
209 KOG4403 Cell surface glycoprot 62.4 3E+02 0.0064 31.9 18.3 33 445-477 345-377 (575)
210 TIGR02231 conserved hypothetic 62.3 59 0.0013 36.7 10.6 27 451-477 142-168 (525)
211 KOG3894 SNARE protein Syntaxin 62.3 1.3E+02 0.0028 33.1 12.5 33 581-613 283-315 (316)
212 PF08826 DMPK_coil: DMPK coile 62.2 99 0.0022 26.3 9.8 57 350-417 4-60 (61)
213 PF15066 CAGE1: Cancer-associa 62.1 2.3E+02 0.0049 32.9 14.7 39 485-523 386-424 (527)
214 TIGR03495 phage_LysB phage lys 62.1 83 0.0018 30.5 10.1 34 483-516 62-95 (135)
215 PF11932 DUF3450: Protein of u 62.0 1.7E+02 0.0037 30.0 13.0 17 465-481 128-144 (251)
216 PTZ00266 NIMA-related protein 61.4 2.8E+02 0.006 34.9 16.6 14 68-81 145-158 (1021)
217 COG4372 Uncharacterized protei 61.1 3E+02 0.0065 31.5 27.8 79 304-383 113-194 (499)
218 PRK09343 prefoldin subunit bet 60.8 1.4E+02 0.003 27.9 11.1 30 384-413 16-45 (121)
219 PF15035 Rootletin: Ciliary ro 60.8 1.9E+02 0.0041 29.1 14.4 91 312-409 65-161 (182)
220 PF10211 Ax_dynein_light: Axon 60.3 1.9E+02 0.0041 29.0 16.2 16 307-322 80-95 (189)
221 PF12808 Mto2_bdg: Micro-tubul 59.5 23 0.0005 29.3 5.0 42 348-389 9-50 (52)
222 TIGR00634 recN DNA repair prot 59.0 3.3E+02 0.0071 31.3 19.9 33 351-383 172-204 (563)
223 KOG0999 Microtubule-associated 58.9 3.8E+02 0.0082 32.0 25.6 148 371-521 64-233 (772)
224 KOG2129 Uncharacterized conser 58.8 3.4E+02 0.0073 31.4 21.0 63 313-382 138-204 (552)
225 KOG1937 Uncharacterized conser 58.8 3.5E+02 0.0075 31.5 21.6 30 378-407 289-318 (521)
226 TIGR02231 conserved hypothetic 58.5 1.3E+02 0.0028 34.0 12.4 28 446-473 144-171 (525)
227 KOG4637 Adaptor for phosphoino 57.9 3.3E+02 0.0072 31.0 17.0 55 445-502 228-282 (464)
228 PF11180 DUF2968: Protein of u 57.9 2.3E+02 0.005 29.2 14.0 36 446-481 153-188 (192)
229 PF11365 DUF3166: Protein of u 57.7 60 0.0013 29.9 7.9 82 384-468 3-90 (96)
230 PF05010 TACC: Transforming ac 57.5 2.4E+02 0.0051 29.2 24.8 42 380-421 81-122 (207)
231 PF04102 SlyX: SlyX; InterPro 57.5 60 0.0013 27.5 7.4 46 367-412 3-48 (69)
232 PF07798 DUF1640: Protein of u 57.4 2E+02 0.0043 28.2 18.7 104 367-476 43-153 (177)
233 PRK10929 putative mechanosensi 57.1 5.2E+02 0.011 33.0 30.6 57 363-419 175-231 (1109)
234 COG3883 Uncharacterized protei 57.1 2.8E+02 0.006 29.8 22.6 63 361-423 38-100 (265)
235 PF13747 DUF4164: Domain of un 56.9 1.5E+02 0.0032 26.6 11.8 78 310-392 7-84 (89)
236 KOG0962 DNA repair protein RAD 56.6 5.6E+02 0.012 33.2 23.0 60 364-423 205-264 (1294)
237 PF07106 TBPIP: Tat binding pr 56.4 1.7E+02 0.0037 28.2 11.3 13 463-475 125-137 (169)
238 PF01920 Prefoldin_2: Prefoldi 56.2 1.3E+02 0.0029 26.0 10.2 35 443-477 65-99 (106)
239 KOG4593 Mitotic checkpoint pro 54.9 4.7E+02 0.01 31.8 33.3 56 368-423 151-206 (716)
240 PF04889 Cwf_Cwc_15: Cwf15/Cwc 54.8 39 0.00085 35.3 7.1 12 291-302 156-167 (244)
241 PF04012 PspA_IM30: PspA/IM30 54.7 2.3E+02 0.005 28.2 22.6 55 365-419 88-142 (221)
242 PRK06975 bifunctional uroporph 54.6 3.7E+02 0.008 31.9 15.6 42 566-608 563-609 (656)
243 PF09486 HrpB7: Bacterial type 54.6 2.3E+02 0.005 28.2 14.6 99 370-478 17-117 (158)
244 PF04094 DUF390: Protein of un 54.4 4.9E+02 0.011 31.9 19.5 89 295-394 496-588 (828)
245 PRK10803 tol-pal system protei 54.1 51 0.0011 34.4 7.8 52 367-418 39-90 (263)
246 PF02403 Seryl_tRNA_N: Seryl-t 53.4 1.5E+02 0.0033 26.3 9.7 77 391-473 24-100 (108)
247 PRK02793 phi X174 lysis protei 53.2 95 0.0021 26.8 8.0 43 366-408 6-48 (72)
248 PF04889 Cwf_Cwc_15: Cwf15/Cwc 52.2 45 0.00098 34.9 7.0 7 265-271 134-140 (244)
249 PF09304 Cortex-I_coil: Cortex 51.9 2.1E+02 0.0046 27.0 13.1 46 373-418 7-52 (107)
250 KOG4360 Uncharacterized coiled 51.7 4E+02 0.0088 31.4 14.7 68 442-509 228-302 (596)
251 PF09486 HrpB7: Bacterial type 51.6 2.6E+02 0.0056 27.8 15.3 19 459-477 84-102 (158)
252 COG4372 Uncharacterized protei 51.5 4.3E+02 0.0092 30.3 29.5 44 372-415 124-170 (499)
253 PF07798 DUF1640: Protein of u 51.2 2.5E+02 0.0054 27.6 17.9 24 399-422 47-70 (177)
254 KOG3647 Predicted coiled-coil 50.7 3.7E+02 0.0081 29.4 15.0 65 359-423 89-160 (338)
255 PF06785 UPF0242: Uncharacteri 50.5 4.1E+02 0.0089 29.9 15.0 31 314-345 78-108 (401)
256 KOG0018 Structural maintenance 50.3 6.5E+02 0.014 32.1 29.1 44 337-380 242-285 (1141)
257 KOG0993 Rab5 GTPase effector R 50.3 4.6E+02 0.0099 30.3 16.2 160 294-522 51-215 (542)
258 KOG0239 Kinesin (KAR3 subfamil 49.9 3.8E+02 0.0082 32.2 14.7 39 580-630 374-412 (670)
259 COG1566 EmrA Multidrug resista 49.1 3.6E+02 0.0078 29.9 13.5 120 379-521 88-208 (352)
260 PRK02119 hypothetical protein; 49.1 49 0.0011 28.7 5.7 31 489-519 23-53 (73)
261 PF12777 MT: Microtubule-bindi 48.8 64 0.0014 34.7 7.8 55 380-434 233-287 (344)
262 PTZ00266 NIMA-related protein 48.8 2.4E+02 0.0051 35.5 13.3 17 571-589 691-707 (1021)
263 COG4026 Uncharacterized protei 48.7 3.5E+02 0.0075 29.0 12.6 27 393-419 132-158 (290)
264 PF06120 Phage_HK97_TLTM: Tail 48.7 3.9E+02 0.0085 29.1 17.1 34 486-519 131-164 (301)
265 TIGR03752 conj_TIGR03752 integ 48.7 1.5E+02 0.0032 34.2 10.8 25 446-470 115-139 (472)
266 PF02403 Seryl_tRNA_N: Seryl-t 48.0 1.9E+02 0.0041 25.7 9.4 61 362-422 37-100 (108)
267 PF14817 HAUS5: HAUS augmin-li 47.6 5.7E+02 0.012 30.6 17.7 70 443-523 361-430 (632)
268 PF05266 DUF724: Protein of un 46.8 3.3E+02 0.0071 27.6 14.0 15 345-359 108-122 (190)
269 PF05110 AF-4: AF-4 proto-onco 46.6 14 0.0003 46.3 2.7 44 565-608 967-1013(1191)
270 PRK10636 putative ABC transpor 46.5 1.4E+02 0.003 34.8 10.5 72 451-522 560-631 (638)
271 PF15397 DUF4618: Domain of un 46.0 4.1E+02 0.0088 28.5 19.8 144 360-521 5-156 (258)
272 PRK10361 DNA recombination pro 45.8 5.4E+02 0.012 29.9 26.8 33 364-396 70-102 (475)
273 PF03961 DUF342: Protein of un 44.9 1.8E+02 0.004 32.3 10.8 76 446-522 333-408 (451)
274 PF15456 Uds1: Up-regulated Du 44.9 2.8E+02 0.0062 26.4 10.7 39 383-421 9-47 (124)
275 PRK04406 hypothetical protein; 44.6 1.9E+02 0.0041 25.3 8.6 36 366-401 9-44 (75)
276 PF10168 Nup88: Nuclear pore c 44.6 6.5E+02 0.014 30.5 18.5 29 480-508 630-658 (717)
277 PRK00295 hypothetical protein; 44.6 1.3E+02 0.0028 25.7 7.5 17 368-384 5-21 (68)
278 PRK00736 hypothetical protein; 44.5 1.2E+02 0.0026 25.9 7.2 27 375-401 19-45 (68)
279 COG3206 GumC Uncharacterized p 44.4 4.9E+02 0.011 28.9 26.2 56 451-510 339-394 (458)
280 KOG1821 Uncharacterized conser 43.7 1.8E+02 0.0038 33.4 10.2 27 237-263 404-430 (662)
281 TIGR03319 YmdA_YtgF conserved 42.9 5.9E+02 0.013 29.5 21.6 8 366-373 78-85 (514)
282 PRK15178 Vi polysaccharide exp 42.9 5.7E+02 0.012 29.3 21.1 56 366-421 284-339 (434)
283 KOG4677 Golgi integral membran 42.8 6.1E+02 0.013 29.6 19.1 27 3-29 2-28 (554)
284 TIGR02473 flagell_FliJ flagell 42.0 2.7E+02 0.0058 25.3 16.4 50 384-433 63-112 (141)
285 PRK13729 conjugal transfer pil 41.8 1.3E+02 0.0027 34.8 9.0 46 374-419 75-120 (475)
286 PF15290 Syntaphilin: Golgi-lo 41.7 3.3E+02 0.0072 29.8 11.5 29 380-408 73-101 (305)
287 PRK11578 macrolide transporter 41.6 4.5E+02 0.0097 28.2 12.7 76 445-524 104-179 (370)
288 PF05483 SCP-1: Synaptonemal c 41.3 7.5E+02 0.016 30.3 31.8 68 461-528 587-654 (786)
289 KOG1899 LAR transmembrane tyro 41.0 5E+02 0.011 31.5 13.5 138 372-510 108-259 (861)
290 PRK00409 recombination and DNA 40.9 5.3E+02 0.012 31.3 14.4 17 610-626 762-778 (782)
291 PF07227 DUF1423: Protein of u 40.1 5.9E+02 0.013 29.4 13.6 108 382-494 336-445 (446)
292 PRK11519 tyrosine kinase; Prov 39.8 7.2E+02 0.016 29.6 23.9 32 387-418 265-296 (719)
293 PRK02119 hypothetical protein; 39.4 2.2E+02 0.0048 24.7 8.2 35 368-402 9-43 (73)
294 PRK04778 septation ring format 39.3 6.7E+02 0.014 29.1 27.3 67 457-523 351-424 (569)
295 PF04102 SlyX: SlyX; InterPro 39.2 1.9E+02 0.0042 24.5 7.7 49 373-421 2-50 (69)
296 PF14915 CCDC144C: CCDC144C pr 38.5 5.8E+02 0.013 28.1 25.3 114 311-424 74-193 (305)
297 PF10458 Val_tRNA-synt_C: Valy 38.3 2.4E+02 0.0051 23.6 8.7 28 453-480 3-30 (66)
298 PF06657 Cep57_MT_bd: Centroso 38.0 1.4E+02 0.003 26.3 6.8 25 484-508 52-76 (79)
299 PRK06568 F0F1 ATP synthase sub 37.8 4.1E+02 0.0089 26.2 15.8 50 364-413 82-132 (154)
300 TIGR03752 conj_TIGR03752 integ 37.8 2.9E+02 0.0064 31.9 11.0 17 446-462 122-138 (472)
301 PRK11578 macrolide transporter 37.7 3.6E+02 0.0077 28.9 11.2 29 449-477 153-181 (370)
302 KOG4593 Mitotic checkpoint pro 37.6 8.4E+02 0.018 29.8 28.5 68 356-423 132-199 (716)
303 PF03962 Mnd1: Mnd1 family; I 37.6 3.8E+02 0.0083 26.9 10.7 63 445-508 67-129 (188)
304 PF05278 PEARLI-4: Arabidopsis 37.5 5.6E+02 0.012 27.7 14.1 88 286-392 172-259 (269)
305 PF13166 AAA_13: AAA domain 37.3 7.2E+02 0.016 28.9 25.7 30 486-515 442-471 (712)
306 KOG4074 Leucine zipper nuclear 37.1 1.1E+02 0.0023 33.8 7.1 55 465-522 141-196 (383)
307 KOG3457 Sec61 protein transloc 37.0 25 0.00055 31.9 2.2 16 593-608 68-83 (88)
308 PRK00846 hypothetical protein; 36.9 2.9E+02 0.0062 24.6 8.6 51 372-422 10-60 (77)
309 PRK01203 prefoldin subunit alp 36.9 4E+02 0.0087 25.8 12.2 80 437-516 4-121 (130)
310 PRK04325 hypothetical protein; 36.6 2.6E+02 0.0057 24.3 8.2 25 376-400 24-48 (74)
311 PF08826 DMPK_coil: DMPK coile 36.4 2.7E+02 0.0059 23.7 9.3 49 346-394 10-58 (61)
312 KOG1962 B-cell receptor-associ 36.3 3.5E+02 0.0076 28.3 10.4 57 468-524 134-193 (216)
313 COG2900 SlyX Uncharacterized p 36.1 2.6E+02 0.0057 24.8 8.0 42 364-405 4-45 (72)
314 PF05010 TACC: Transforming ac 35.8 5.2E+02 0.011 26.8 22.6 28 452-479 159-186 (207)
315 PTZ00491 major vault protein; 35.7 9.7E+02 0.021 29.9 16.5 20 493-512 770-789 (850)
316 PRK01156 chromosome segregatio 35.7 8.6E+02 0.019 29.3 29.4 13 72-84 21-33 (895)
317 KOG1962 B-cell receptor-associ 35.7 4.6E+02 0.0099 27.5 11.1 36 370-405 160-195 (216)
318 PLN02939 transferase, transfer 35.6 1E+03 0.022 30.2 20.4 14 406-419 197-210 (977)
319 TIGR00237 xseA exodeoxyribonuc 35.6 6.8E+02 0.015 28.1 16.9 53 447-499 307-362 (432)
320 PF07889 DUF1664: Protein of u 35.4 4.1E+02 0.009 25.5 13.2 25 443-467 99-123 (126)
321 PF04576 Zein-binding: Zein-bi 35.4 3.7E+02 0.008 24.9 12.1 80 287-405 2-93 (94)
322 PF08172 CASP_C: CASP C termin 34.6 4.1E+02 0.0089 28.0 10.8 36 442-477 88-123 (248)
323 PRK04778 septation ring format 34.6 7.8E+02 0.017 28.5 29.3 19 461-479 448-466 (569)
324 PF15619 Lebercilin: Ciliary p 34.5 5.1E+02 0.011 26.3 22.7 22 306-327 7-28 (194)
325 PRK15422 septal ring assembly 34.4 3.5E+02 0.0076 24.4 10.2 66 385-466 7-72 (79)
326 PF06991 Prp19_bind: Splicing 34.1 3.3E+02 0.0072 29.2 10.2 10 472-481 196-205 (276)
327 PF14182 YgaB: YgaB-like prote 33.9 3.6E+02 0.0078 24.4 9.0 42 432-477 13-56 (79)
328 PRK00286 xseA exodeoxyribonucl 33.8 6.9E+02 0.015 27.7 17.2 53 447-499 312-367 (438)
329 COG4913 Uncharacterized protei 33.5 1E+03 0.023 29.6 21.1 103 289-396 270-373 (1104)
330 PF14851 FAM176: FAM176 family 33.3 67 0.0014 31.8 4.6 19 278-296 116-134 (153)
331 PF06156 DUF972: Protein of un 33.2 1.7E+02 0.0037 27.2 6.9 41 485-525 11-51 (107)
332 COG0419 SbcC ATPase involved i 33.1 9.8E+02 0.021 29.2 32.7 22 313-335 205-226 (908)
333 PF05529 Bap31: B-cell recepto 33.0 2.7E+02 0.0059 27.3 8.8 32 447-478 154-185 (192)
334 PF08657 DASH_Spc34: DASH comp 32.9 1.3E+02 0.0028 31.9 6.9 62 440-501 180-243 (259)
335 PF06785 UPF0242: Uncharacteri 32.4 7.8E+02 0.017 27.8 23.0 15 456-470 203-217 (401)
336 PF05335 DUF745: Protein of un 32.4 5.6E+02 0.012 26.1 19.0 29 449-477 146-174 (188)
337 PF13942 Lipoprotein_20: YfhG 32.2 5.7E+02 0.012 26.2 11.4 34 302-335 72-109 (179)
338 PF06716 DUF1201: Protein of u 32.1 64 0.0014 26.6 3.5 30 593-622 17-48 (54)
339 PRK01156 chromosome segregatio 32.0 9.8E+02 0.021 28.9 30.6 17 309-325 467-483 (895)
340 PF09738 DUF2051: Double stran 31.6 6.6E+02 0.014 27.4 12.0 34 434-467 99-132 (302)
341 KOG2129 Uncharacterized conser 31.2 9E+02 0.019 28.1 21.2 84 339-422 99-191 (552)
342 PRK00846 hypothetical protein; 31.1 3.6E+02 0.0078 24.0 8.2 31 376-406 28-58 (77)
343 PRK03947 prefoldin subunit alp 31.1 4.4E+02 0.0096 24.5 11.7 20 451-470 98-117 (140)
344 TIGR02971 heterocyst_DevB ABC 31.0 6.3E+02 0.014 26.3 17.7 21 503-523 179-199 (327)
345 PRK00295 hypothetical protein; 30.6 3.3E+02 0.0071 23.3 7.7 39 368-406 12-50 (68)
346 PF10267 Tmemb_cc2: Predicted 30.6 8.4E+02 0.018 27.7 18.6 24 577-601 360-383 (395)
347 COG4985 ABC-type phosphate tra 30.4 3.6E+02 0.0079 29.0 9.5 26 446-471 220-245 (289)
348 PRK07720 fliJ flagellar biosyn 29.8 4.7E+02 0.01 24.5 16.8 69 364-432 33-114 (146)
349 PF04912 Dynamitin: Dynamitin 29.8 7.8E+02 0.017 27.0 14.4 15 313-327 211-225 (388)
350 PF12329 TMF_DNA_bd: TATA elem 29.7 3.7E+02 0.0081 23.3 8.9 70 400-478 2-71 (74)
351 PF06005 DUF904: Protein of un 29.6 3.8E+02 0.0083 23.4 8.6 31 372-402 8-38 (72)
352 COG4467 Regulator of replicati 29.6 1.7E+02 0.0036 27.9 6.2 39 485-523 11-49 (114)
353 PF14992 TMCO5: TMCO5 family 29.5 6.8E+02 0.015 27.3 11.5 34 389-422 11-44 (280)
354 PRK00736 hypothetical protein; 29.4 2.8E+02 0.006 23.7 7.1 47 366-412 3-49 (68)
355 PF09738 DUF2051: Double stran 29.4 7.8E+02 0.017 26.9 12.1 70 345-421 96-165 (302)
356 KOG4360 Uncharacterized coiled 29.3 9E+02 0.019 28.7 13.0 28 229-262 107-134 (596)
357 cd00890 Prefoldin Prefoldin is 29.1 4.2E+02 0.0091 23.7 10.8 35 443-477 90-124 (129)
358 PF09753 Use1: Membrane fusion 29.1 1.1E+02 0.0025 31.3 5.7 16 506-521 166-181 (251)
359 KOG0681 Actin-related protein 29.1 1.1E+03 0.023 28.4 15.0 31 292-326 286-316 (645)
360 PTZ00491 major vault protein; 28.2 1.3E+03 0.027 29.0 15.4 20 221-240 568-587 (850)
361 PRK13729 conjugal transfer pil 28.1 1.8E+02 0.0039 33.6 7.4 55 367-421 75-129 (475)
362 KOG2264 Exostosin EXT1L [Signa 28.1 4.1E+02 0.0088 31.9 10.1 53 456-522 95-147 (907)
363 PF10211 Ax_dynein_light: Axon 27.9 6.3E+02 0.014 25.4 11.3 8 447-454 170-177 (189)
364 PRK04406 hypothetical protein; 27.8 4E+02 0.0086 23.3 7.9 32 374-405 24-55 (75)
365 PRK13453 F0F1 ATP synthase sub 27.8 5.8E+02 0.013 24.9 15.8 45 362-406 94-139 (173)
366 PF10498 IFT57: Intra-flagella 27.5 8.9E+02 0.019 26.9 15.1 45 381-425 279-323 (359)
367 KOG4603 TBP-1 interacting prot 27.5 4.2E+02 0.009 27.3 9.0 64 440-522 79-142 (201)
368 PRK10361 DNA recombination pro 27.0 1E+03 0.023 27.6 24.5 7 516-522 207-213 (475)
369 PF12761 End3: Actin cytoskele 26.9 3.7E+02 0.0079 27.8 8.6 33 390-422 161-193 (195)
370 PLN02678 seryl-tRNA synthetase 26.7 4E+02 0.0086 30.4 9.8 77 395-477 32-108 (448)
371 PF08581 Tup_N: Tup N-terminal 26.7 4.6E+02 0.0099 23.3 9.4 33 446-478 38-74 (79)
372 PRK02793 phi X174 lysis protei 26.7 4.2E+02 0.0091 22.9 7.9 36 371-406 18-53 (72)
373 PF09787 Golgin_A5: Golgin sub 26.4 1E+03 0.022 27.3 24.5 140 338-478 157-312 (511)
374 PF07851 TMPIT: TMPIT-like pro 26.3 4.7E+02 0.01 29.0 9.9 26 397-422 5-30 (330)
375 PRK04325 hypothetical protein; 26.3 3.2E+02 0.0069 23.7 7.0 44 366-409 7-50 (74)
376 PF07716 bZIP_2: Basic region 26.1 2.5E+02 0.0054 22.5 6.0 32 444-475 22-53 (54)
377 KOG1103 Predicted coiled-coil 26.0 1E+03 0.022 27.1 18.5 49 307-359 135-183 (561)
378 PF12795 MscS_porin: Mechanose 25.9 7.2E+02 0.016 25.3 21.0 62 361-422 78-139 (240)
379 PLN02939 transferase, transfer 25.8 1.5E+03 0.032 28.9 17.4 17 508-524 322-338 (977)
380 COG1730 GIM5 Predicted prefold 25.7 6.5E+02 0.014 24.8 11.3 27 449-475 96-122 (145)
381 PF10587 EF-1_beta_acid: Eukar 25.6 54 0.0012 24.3 1.8 12 275-286 9-20 (28)
382 KOG2264 Exostosin EXT1L [Signa 25.5 6.3E+02 0.014 30.4 11.0 54 365-418 97-150 (907)
383 KOG0995 Centromere-associated 25.5 1.2E+03 0.026 27.8 30.6 32 485-516 542-573 (581)
384 PF10205 KLRAQ: Predicted coil 25.3 5.8E+02 0.013 24.0 9.5 52 465-523 9-60 (102)
385 PF07716 bZIP_2: Basic region 25.2 3.6E+02 0.0078 21.6 7.0 37 380-416 16-52 (54)
386 KOG3970 Predicted E3 ubiquitin 24.9 82 0.0018 33.4 3.7 39 590-633 250-288 (299)
387 PF08409 DUF1736: Domain of un 24.8 81 0.0018 28.0 3.2 28 588-615 21-48 (80)
388 PF02050 FliJ: Flagellar FliJ 24.5 4.4E+02 0.0096 22.4 14.6 41 386-426 49-89 (123)
389 TIGR00293 prefoldin, archaeal 24.3 5.5E+02 0.012 23.4 10.4 26 451-476 90-115 (126)
390 PF04136 Sec34: Sec34-like fam 24.3 6.7E+02 0.015 24.4 13.1 28 489-516 45-72 (157)
391 TIGR03185 DNA_S_dndD DNA sulfu 24.2 1.2E+03 0.026 27.3 35.0 67 454-520 391-466 (650)
392 PRK05689 fliJ flagellar biosyn 24.0 6E+02 0.013 23.7 16.8 52 383-434 65-116 (147)
393 PRK00409 recombination and DNA 23.8 1.4E+03 0.03 27.9 15.2 8 47-54 81-88 (782)
394 KOG3385 V-SNARE [Intracellular 23.4 81 0.0018 30.2 3.1 23 591-613 94-116 (118)
395 PF13863 DUF4200: Domain of un 23.2 5.6E+02 0.012 23.1 15.5 50 345-394 9-58 (126)
396 PF04728 LPP: Lipoprotein leuc 23.2 2.3E+02 0.0051 24.0 5.4 40 390-429 4-43 (56)
397 smart00502 BBC B-Box C-termina 23.0 5E+02 0.011 22.5 16.0 41 380-420 5-45 (127)
398 PF13874 Nup54: Nucleoporin co 23.0 6.4E+02 0.014 24.0 9.1 30 329-359 37-66 (141)
399 PRK13169 DNA replication intia 23.0 3.4E+02 0.0075 25.5 7.1 43 485-527 11-53 (110)
400 PF04859 DUF641: Plant protein 22.9 2.9E+02 0.0062 26.8 6.7 48 368-415 80-127 (131)
401 PRK13428 F0F1 ATP synthase sub 22.8 1.1E+03 0.025 26.6 16.5 47 361-407 76-123 (445)
402 PF03961 DUF342: Protein of un 22.4 3.8E+02 0.0082 29.9 8.5 28 446-473 381-408 (451)
403 PF05384 DegS: Sensor protein 22.3 7.9E+02 0.017 24.5 13.3 50 474-523 68-118 (159)
404 PF03938 OmpH: Outer membrane 22.2 6.5E+02 0.014 23.5 10.5 38 360-397 72-109 (158)
405 PF07851 TMPIT: TMPIT-like pro 22.2 1.1E+03 0.024 26.2 16.3 45 573-617 122-166 (330)
406 PF06770 Arif-1: Actin-rearran 22.1 1.1E+02 0.0023 31.6 3.9 30 583-612 163-192 (196)
407 PF14712 Snapin_Pallidin: Snap 22.0 5.2E+02 0.011 22.3 10.8 37 387-423 12-48 (92)
408 KOG0946 ER-Golgi vesicle-tethe 22.0 1.7E+03 0.036 28.1 22.5 38 440-477 737-774 (970)
409 PF15188 CCDC-167: Coiled-coil 21.9 4.9E+02 0.011 23.7 7.5 57 456-512 7-66 (85)
410 KOG2991 Splicing regulator [RN 21.5 1.1E+03 0.024 25.9 20.0 168 275-477 115-301 (330)
411 PRK14011 prefoldin subunit alp 21.3 7.7E+02 0.017 24.1 10.6 24 450-473 91-114 (144)
412 KOG0239 Kinesin (KAR3 subfamil 21.1 1.5E+03 0.033 27.4 18.0 15 488-502 282-296 (670)
413 PRK14127 cell division protein 21.1 5.2E+02 0.011 24.4 7.8 53 447-499 37-102 (109)
414 TIGR01730 RND_mfp RND family e 21.1 7.1E+02 0.015 25.2 9.6 41 447-487 64-104 (322)
415 PF05529 Bap31: B-cell recepto 21.0 8E+02 0.017 24.1 9.8 70 454-523 118-188 (192)
416 TIGR00634 recN DNA repair prot 20.7 1.3E+03 0.029 26.5 21.7 18 484-501 348-365 (563)
417 PLN02320 seryl-tRNA synthetase 20.7 3.8E+02 0.0083 31.2 8.3 39 565-603 203-247 (502)
418 PF02841 GBP_C: Guanylate-bind 20.4 1E+03 0.022 25.1 14.6 24 452-475 234-257 (297)
419 PRK13182 racA polar chromosome 20.4 6.7E+02 0.014 25.2 9.0 23 445-467 123-145 (175)
420 PRK09343 prefoldin subunit bet 20.1 7.2E+02 0.016 23.2 13.0 37 386-422 4-40 (121)
421 PRK05431 seryl-tRNA synthetase 20.1 6.3E+02 0.014 28.3 9.7 77 395-477 27-103 (425)
No 1
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=99.96 E-value=3.5e-27 Score=256.16 Aligned_cols=230 Identities=26% Similarity=0.335 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-H-------------HHHHHHHHHHHHHhhhhhhcch----hhHhHH
Q 006637 371 AKLETANADLARALAAAQKKLEMETNQVAELRQ-Q-------------TELKEVAHEELSQRNSNTHQTG----IYLKRL 432 (637)
Q Consensus 371 a~LE~enaeLAkALA~~QRkLeee~~rvaELrq-k-------------ve~LE~e~esLRqeL~~a~Q~~----~sa~Ql 432 (637)
..++..-+++..+-.++++.++.+...++.|+. . +..|..+.+.++.+++.+.... ..+.++
T Consensus 228 ~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~ 307 (511)
T PF09787_consen 228 AEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDL 307 (511)
T ss_pred HHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666677777777777777777 1 2344444444444444432111 000000
Q ss_pred H----------------------HhhchHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCCc--hhH
Q 006637 433 A----------------------ASKGVEFEREILEAEYTFIADKII----QLEDKAKKLEGNIEMTRKEIEDPT--EVE 484 (637)
Q Consensus 433 ~----------------------a~~~~EaElE~~e~Els~Le~el~----~Le~klqk~E~EIe~LR~~ls~pT--~~q 484 (637)
. .....|.|+..+..|+.++.+++. .++.++..++.||+.+|.++...+ .+.
T Consensus 308 e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~ 387 (511)
T PF09787_consen 308 EAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSARASSSSW 387 (511)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 0 011114555566677777777663 577888999999999999997533 457
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCC--C---CCCcccCccccCccCCCCchhH
Q 006637 485 IELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDENKP-VTGS--S---SRDLEFGAWDLSQSNLRPLFEE 558 (637)
Q Consensus 485 ~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERlerl~ee~~s-~s~s--s---~~d~E~gs~~~~~srlrPlF~~ 558 (637)
.|+|.||++||+.||+||++||.|.+||++|.|||||+.+.+++..+ ..+. . ++..++.. .++.+++..
T Consensus 388 ~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~~~~~~~~~~~~~~~~~~~~~d~~-----~r~~~~~~~ 462 (511)
T PF09787_consen 388 NELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLKEEASNNRPSSILMKYSNSEDDAE-----SRVPLLMKD 462 (511)
T ss_pred HhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHhhccCCCCchhhHhhccCCCchh-----hhhhhhccC
Confidence 89999999999999999999999999999999999999876663111 1111 1 11111111 121122221
Q ss_pred h--hhcccchhhhhhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Q 006637 559 K--IRSGKKHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLW 605 (637)
Q Consensus 559 ~--va~g~R~v~sal~~LD~~~lrlgrfLrR~P~ARllfiiYlllLHLw 605 (637)
. +.+..|++++|++.||+|+||+|+||||||++|+|||+||++||||
T Consensus 463 ~~~d~~~~~r~~~a~~~iD~~~ir~g~fLrr~p~~R~~~i~Y~~~LhlW 511 (511)
T PF09787_consen 463 SPHDIGVARRVKRAASVIDSFSIRLGIFLRRYPMARIFVIIYMALLHLW 511 (511)
T ss_pred CCccchHHHHHHHHHHHHhHhhHHHHHHHhcCHHHHHHHHHHHHHHcCC
Confidence 1 1134699999999999999999999999999999999999999999
No 2
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=99.95 E-value=5.1e-26 Score=241.51 Aligned_cols=265 Identities=14% Similarity=0.080 Sum_probs=183.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 006637 345 MMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQ 424 (637)
Q Consensus 345 mlaS~aALelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q 424 (637)
+-.+.+++..+....-..--.+.+|...+|.+..+++.++.-+.+++.+...+++++.+++..-. ..+-+++|.+.++
T Consensus 215 L~la~~~~~~~~e~~i~~~~~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~--~l~~keeL~~s~~ 292 (554)
T KOG4677|consen 215 LQLAEEAVSMHDENVITAVLIFLKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLDLFR--FLDRKEELALSHY 292 (554)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHH
Confidence 44455666666666666667789999999999999999999999999999999999999987633 3334444444432
Q ss_pred chhh---------HhH--HHH---hhch----------------------------------------------------
Q 006637 425 TGIY---------LKR--LAA---SKGV---------------------------------------------------- 438 (637)
Q Consensus 425 ~~~s---------a~Q--l~a---~~~~---------------------------------------------------- 438 (637)
+-.. +.+ +.. .+..
T Consensus 293 ~e~~i~qs~~kstas~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~h~~ka~~~~~~~ 372 (554)
T KOG4677|consen 293 REHLIIQSPDKSTASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAGQTQIFRKHPRKASILNMPL 372 (554)
T ss_pred HHhhccCCCCcchhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHhhhHhhhhhhchH
Confidence 2110 001 000 0000
Q ss_pred --HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCCch--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 439 --EFEREILEAEYTFIADKII----QLEDKAKKLEGNIEMTRKEIEDPTE--VEIELKRRLGQLTDHLIQKQAQVEALSS 510 (637)
Q Consensus 439 --EaElE~~e~Els~Le~el~----~Le~klqk~E~EIe~LR~~ls~pT~--~q~ELE~RL~qLTE~LIqKQTQLEsLsS 510 (637)
+.+.+..+.|..+....+. .+|.++...+.||.++++++...+- ...+|+.+.++||++|++||++||+|..
T Consensus 373 ~l~~~~ec~~~e~e~~~~~~~r~~~~~qski~dk~~el~kl~~~l~~r~~~~s~~~l~~~~~qLt~tl~qkq~~le~v~~ 452 (554)
T KOG4677|consen 373 VLTLFYECFYHETEAEGTFSSRVNLKKQSKIPDKQYELTKLAARLKLRAWNDSVDALFTTKNQLTYTLKQKQIGLERVVE 452 (554)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhccchhhccCcchHHHHHHHHHHHHHHhhhhhHHHHhchhHHHHHHHHHHHHHHHHHHH
Confidence 0001111122222222111 3456677889999999999976554 3689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccCccccCccCCCCchhHhhhcccchhhhhhhhhhHHHHHHHHHHhhchh
Q 006637 511 EKATLAFRIEAVSRLLDENKPVTGSSSRDLEFGAWDLSQSNLRPLFEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPI 590 (637)
Q Consensus 511 EK~AL~lQLERlerl~ee~~s~s~ss~~d~E~gs~~~~~srlrPlF~~~va~g~R~v~sal~~LD~~~lrlgrfLrR~P~ 590 (637)
+++.|.++|||++.+-..... .++.....+.+ ..+....|+|.+.-. ..++..+++.+|.++++++.|||+||.
T Consensus 453 ~~~~ln~~lerLq~~~N~~~~---v~~~~~~n~~~-~~~~~v~~l~~d~~~--~~q~r~a~s~VD~~s~~l~~~lr~~ps 526 (554)
T KOG4677|consen 453 ILHKLNAPLERLQEYVNLVED---VDTKLNLNTKF-KCHDVVIDLYRDLKD--RQQLRAARSKVDKGSAELEKILRLLPS 526 (554)
T ss_pred HHhhhhhhHHHHHHHhccccc---cceeeccCCCc-ccccccchHhhhhhh--hHHHHHHHhhcchhhHHHHHHHhcCch
Confidence 999999999999754321111 11111111111 122234466776421 267788899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 006637 591 AKLWSLVYLVCLHLWVIYILLSHSQSS 617 (637)
Q Consensus 591 ARllfiiYlllLHLwVf~vL~~~s~~s 617 (637)
||+||++||++|||||||||++|||..
T Consensus 527 Arif~~~YmallHLWvmivlLTYTPEm 553 (554)
T KOG4677|consen 527 ARIFWKNYMALLHLWVMIVLLTYTPEM 553 (554)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence 999999999999999999999999973
No 3
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=99.65 E-value=2.4e-15 Score=152.17 Aligned_cols=129 Identities=24% Similarity=0.370 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---C-CCCC----------------CCCccc-
Q 006637 484 EIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDENKP---V-TGSS----------------SRDLEF- 542 (637)
Q Consensus 484 q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERlerl~ee~~s---~-s~ss----------------~~d~E~- 542 (637)
..|||..++.+-+.+-.=|.+++.|.+|+..|. ||+ |+.+-... . ++.. ..|.+.
T Consensus 95 n~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLY---EKi-RylqSY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~~ 170 (248)
T PF08172_consen 95 NAELEEELRKQQQTISSLRREVESLRADNVKLY---EKI-RYLQSYNNKGSGSSSSAVSNSPGRSSVSPEPGGSSDVESN 170 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-HHHhhCcccccCCCcccccCCCCcccCCCCCCCCCchhHH
Confidence 379999999999999999999999999999999 888 44332221 0 0000 112222
Q ss_pred CccccCccCCCCc--hhHhhhcccchhhhhhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 006637 543 GAWDLSQSNLRPL--FEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYILLSHSQSSAE 619 (637)
Q Consensus 543 gs~~~~~srlrPl--F~~~va~g~R~v~sal~~LD~~~lrlgrfLrR~P~ARllfiiYlllLHLwVf~vL~~~s~~ss~ 619 (637)
-+-..|...+.|+ |.... ..|.+ +.|+|+|++++.+||++++++++|++||||||+||+||||+||+++.++++
T Consensus 171 rY~~~YE~~l~PF~~F~~~E--~~R~~-~~L~~~eR~~ls~~r~vL~nr~~R~~f~~Y~l~LH~lvf~~l~~~~~~~~~ 246 (248)
T PF08172_consen 171 RYSSAYEESLNPFAAFRKRE--RQRRY-KRLSPPERIFLSLTRFVLSNRTTRMLFFFYCLGLHLLVFFVLYYMSHSTSM 246 (248)
T ss_pred HHHHHHHhccChHHHHhHhh--HHHHH-hcCChHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 1222355567775 55432 23554 559999999999999999999999999999999999999999997766544
No 4
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=99.17 E-value=6.1e-08 Score=108.23 Aligned_cols=74 Identities=20% Similarity=0.265 Sum_probs=56.7
Q ss_pred ccCccCCCCc--hhHhhhcccchhhhhhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhcCCCCcccCc
Q 006637 546 DLSQSNLRPL--FEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYILLSHSQSSAEARS 622 (637)
Q Consensus 546 ~~~~srlrPl--F~~~va~g~R~v~sal~~LD~~~lrlgrfLrR~P~ARllfiiYlllLHLwVf~vL~~~s~~ss~grs 622 (637)
..|...+.|+ |.-.. ..++|.. +.++|++++.+++++..+.++|.+||+|||+||++||++||...++..+.+.
T Consensus 551 ~~yee~l~p~a~f~k~e--~~~k~~~-l~~~~~~~~s~~r~~l~nk~~r~~~~~y~i~lh~~v~~~l~~~~~s~~~~~~ 626 (629)
T KOG0963|consen 551 AAYEESISPFASFRKKE--RERKYKR-LGSFERITLSLGRTLLFNKMTRTLFFFYTIGLHLLVFIVLYLGAASNTMYTP 626 (629)
T ss_pred hHHHhhcCHHHHHHHHH--Hhhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3455567775 33222 2566765 8999999999999999999999999999999999999999954444444443
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.94 E-value=0.05 Score=63.96 Aligned_cols=10 Identities=30% Similarity=0.361 Sum_probs=5.3
Q ss_pred CCCCCCcccc
Q 006637 92 TKPKSTLTDS 101 (637)
Q Consensus 92 ~~~~~~~~~~ 101 (637)
..-+|||-|.
T Consensus 33 GsGKS~ildA 42 (1164)
T TIGR02169 33 GSGKSNIGDA 42 (1164)
T ss_pred CCCHHHHHHH
Confidence 3455666554
No 6
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.90 E-value=0.061 Score=62.92 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 450 TFIADKIIQLEDKAKKLEGNIEMTRKEI 477 (637)
Q Consensus 450 s~Le~el~~Le~klqk~E~EIe~LR~~l 477 (637)
..++..+..+..++..++.++..++..+
T Consensus 862 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 889 (1179)
T TIGR02168 862 EELEELIEELESELEALLNERASLEEAL 889 (1179)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.85 E-value=0.086 Score=62.08 Aligned_cols=9 Identities=22% Similarity=0.457 Sum_probs=4.4
Q ss_pred ccCccccch
Q 006637 619 EARSGAVFS 627 (637)
Q Consensus 619 ~grsgA~~s 627 (637)
++.+|.++.
T Consensus 642 vTldG~~~~ 650 (1164)
T TIGR02169 642 VTLEGELFE 650 (1164)
T ss_pred EEeCceeEc
Confidence 444555544
No 8
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.56 E-value=0.13 Score=62.66 Aligned_cols=223 Identities=22% Similarity=0.265 Sum_probs=121.2
Q ss_pred HHhHHHHHHHHHHHHHHHhHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006637 301 KAGDAIKERENMVARLEGEKQSLEKILEERA------KQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLE 374 (637)
Q Consensus 301 kA~~~i~eRe~~va~Le~Ek~~leklleEr~------~qQ~~easelq~~mlaS~aALelEk~aHsaTR~qAlaREa~LE 374 (637)
++...+..-..-+..++.....+...+.+.. +.+...+..-......-...++.++......+...+.|..+++
T Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 764 (1163)
T COG1196 685 KLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELE 764 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555555544444433332 2223333344455555566677777777777777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------HhhhhhhcchhhHhH-HHHh----hchHHHH
Q 006637 375 TANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELS-------QRNSNTHQTGIYLKR-LAAS----KGVEFER 442 (637)
Q Consensus 375 ~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLR-------qeL~~a~Q~~~sa~Q-l~a~----~~~EaEl 442 (637)
..+..+...++..+..++.-......+.+.+..++.++..++ .++....+....+.+ +... ...+.++
T Consensus 765 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~ 844 (1163)
T COG1196 765 EELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKL 844 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877777766666666554433344444444444443333 333333222222211 1111 1111122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 443 EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAV 522 (637)
Q Consensus 443 E~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERl 522 (637)
..++.++..++.++..+..++...+.++..+...+........+++.+|+.+...+.+-..+++.+....+.+..+++++
T Consensus 845 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 924 (1163)
T COG1196 845 DELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERL 924 (1163)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333444444444444444555555554444444444578889999999999988888999888888887777776
Q ss_pred H
Q 006637 523 S 523 (637)
Q Consensus 523 e 523 (637)
.
T Consensus 925 ~ 925 (1163)
T COG1196 925 E 925 (1163)
T ss_pred H
Confidence 4
No 9
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.51 E-value=0.031 Score=56.50 Aligned_cols=157 Identities=20% Similarity=0.262 Sum_probs=96.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHh
Q 006637 351 AFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLK 430 (637)
Q Consensus 351 ALelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~ 430 (637)
-++.++......-..+..|+..++....+..+++-..+.....-..++..|+.++.......++.-+++..+..+
T Consensus 47 ~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rk----- 121 (237)
T PF00261_consen 47 LLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERK----- 121 (237)
T ss_dssp HHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHH-----
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 344444444444455666666666666666666666666666666666666666655555555555554444322
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCchhHHHHHHHHHHHHHHHHHHHH
Q 006637 431 RLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE-------DPTEVEIELKRRLGQLTDHLIQKQA 503 (637)
Q Consensus 431 Ql~a~~~~EaElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls-------~pT~~q~ELE~RL~qLTE~LIqKQT 503 (637)
. ...+.++.-.+.++..++.++..++.+|..+.+.+. ..+.-...++.+|+.|++.|-.=-+
T Consensus 122 ----l-------~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~ 190 (237)
T PF00261_consen 122 ----L-------KVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAEN 190 (237)
T ss_dssp ----H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----H-------HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 122333333444444445555555555555555443 3333468899999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006637 504 QVEALSSEKATLAFRIEAVS 523 (637)
Q Consensus 504 QLEsLsSEK~AL~lQLERle 523 (637)
.+|.+......|..++.+++
T Consensus 191 Rae~aE~~v~~Le~~id~le 210 (237)
T PF00261_consen 191 RAEFAERRVKKLEKEIDRLE 210 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888876
No 10
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.46 E-value=0.057 Score=63.60 Aligned_cols=130 Identities=18% Similarity=0.261 Sum_probs=102.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 386 AAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKK 465 (637)
Q Consensus 386 ~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~a~~~~EaElE~~e~Els~Le~el~~Le~klqk 465 (637)
+.|.-|+.+...+..|+..+..++.++..|+.++.-+.... .....+++..+.+..+++.++-.+..++..
T Consensus 228 alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r---------~~~~k~le~~~s~~~~mK~k~d~~~~eL~r 298 (775)
T PF10174_consen 228 ALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADR---------DRLDKQLEVYKSHSLAMKSKMDRLKLELSR 298 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccch---------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 67888999999999999999999999998888764443111 111123445566677777778888888888
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 466 LEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSR 524 (637)
Q Consensus 466 ~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERler 524 (637)
...||..+...+..-+....++..+|.-|-+.|-.|+...+-|.+|+-+|+++||+...
T Consensus 299 k~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~ 357 (775)
T PF10174_consen 299 KKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNS 357 (775)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 88888888888877776778888888999999999999999999999999999988653
No 11
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.12 Score=60.74 Aligned_cols=125 Identities=18% Similarity=0.202 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 396 NQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRK 475 (637)
Q Consensus 396 ~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~a~~~~EaElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~ 475 (637)
.+-..|.++++.|...+..|-.+|++..-...-.++.++.-...-| ....|+..+.++|..++.++.++--|-+.|-.
T Consensus 437 ak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e--~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ 514 (1118)
T KOG1029|consen 437 AKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRE--LMISEIDQLQARIKELQEKLQKLAPEKQELNH 514 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3444555555555555555555555554332223333322222222 23467777777777777777776666666665
Q ss_pred HhCC------Cchh-HHHHHHHH--HHHHHHHHH-------H------------HHHHHHHHHHHHHHHHHHHHH
Q 006637 476 EIED------PTEV-EIELKRRL--GQLTDHLIQ-------K------------QAQVEALSSEKATLAFRIEAV 522 (637)
Q Consensus 476 ~ls~------pT~~-q~ELE~RL--~qLTE~LIq-------K------------QTQLEsLsSEK~AL~lQLERl 522 (637)
++.. ++.. ..+|+.-+ ++|..+-|. | -+|++.|..+.+++.+.+|.+
T Consensus 515 qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~ 589 (1118)
T KOG1029|consen 515 QLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEEL 589 (1118)
T ss_pred HHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5542 2222 34444211 222222111 1 246777777788888877774
No 12
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.36 E-value=0.15 Score=64.91 Aligned_cols=190 Identities=24% Similarity=0.329 Sum_probs=115.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 310 ENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQK 389 (637)
Q Consensus 310 e~~va~Le~Ek~~leklleEr~~qQ~~easelq~~mlaS~aALelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QR 389 (637)
+..+...+.|...|...+++ .+--.+|.++....+..-...+.+++..-..+-++|..++..|.....++++.+...+-
T Consensus 837 ee~~~~~~~e~~~l~~~l~~-~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~ 915 (1930)
T KOG0161|consen 837 EEEMRAKEEEIQKLKEELQK-SESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKE 915 (1930)
T ss_pred HHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555444444411 11112233333333455556778888888888899999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 390 KLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGN 469 (637)
Q Consensus 390 kLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~a~~~~EaElE~~e~Els~Le~el~~Le~klqk~E~E 469 (637)
.+++...+...|..+...++.++..++..+++... .+.....|+..++.+|..|++ +
T Consensus 916 ~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~----------------~~~k~~~Ek~~~e~~~~~l~~-------e 972 (1930)
T KOG0161|consen 916 RLEEEEEKNAELERKKRKLEQEVQELKEQLEELEL----------------TLQKLELEKNAAENKLKNLEE-------E 972 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHH-------H
Confidence 99999888888888888888777777766554421 111112223333333333333 3
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 470 IEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVS 523 (637)
Q Consensus 470 Ie~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERle 523 (637)
|+.++..++.-...-.++|.+++.|++.|.....++..|.--++.|.-+|+.++
T Consensus 973 ~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le 1026 (1930)
T KOG0161|consen 973 INSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLE 1026 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333222222222223557777777777777777777777777776666666654
No 13
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.32 E-value=0.12 Score=62.75 Aligned_cols=55 Identities=27% Similarity=0.244 Sum_probs=38.2
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 470 IEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSR 524 (637)
Q Consensus 470 Ie~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERler 524 (637)
.++||...+.-...-.+--.+|..|.-....++.+||...+|.+-|+-+++.+-+
T Consensus 1691 Ae~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~ 1745 (1758)
T KOG0994|consen 1691 AEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLD 1745 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 3444444433222223444678888888889999999999999999999988743
No 14
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.39 Score=56.70 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 485 IELKRRLGQLTDHLIQKQAQVEALSS 510 (637)
Q Consensus 485 ~ELE~RL~qLTE~LIqKQTQLEsLsS 510 (637)
..+..++..|-+.+..+|.+.|.+..
T Consensus 566 di~n~qlkelk~~~~~q~lake~~yk 591 (1118)
T KOG1029|consen 566 DIFNNQLKELKEDVNSQQLAKEELYK 591 (1118)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888889999999888876
No 15
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.25 E-value=0.58 Score=57.24 Aligned_cols=105 Identities=22% Similarity=0.273 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 305 AIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARAL 384 (637)
Q Consensus 305 ~i~eRe~~va~Le~Ek~~leklleEr~~qQ~~easelq~~mlaS~aALelEk~aHsaTR~qAlaREa~LE~enaeLAkAL 384 (637)
.+...+.-+..+..+...++..+++-..+. ..+-.-...+..+..+...-..+...|...|+.+...+...+
T Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 753 (1163)
T COG1196 682 QLEKLEEELKSLKNELRSLEDLLEELRRQL--------EELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEEL 753 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666666555553322221 122222334444444444445566666667777777766666
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 385 AAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 417 (637)
Q Consensus 385 A~~QRkLeee~~rvaELrqkve~LE~e~esLRq 417 (637)
..++..+......+..+......++...+++..
T Consensus 754 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~ 786 (1163)
T COG1196 754 EELQERLEELEEELESLEEALAKLKEEIEELEE 786 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666665555555555555443
No 16
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.21 E-value=0.51 Score=60.48 Aligned_cols=122 Identities=20% Similarity=0.211 Sum_probs=75.0
Q ss_pred HHhHHHHHHHHHHHHHHHhHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006637 301 KAGDAIKERENMVARLEGEKQSLEKILEERA------KQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLE 374 (637)
Q Consensus 301 kA~~~i~eRe~~va~Le~Ek~~leklleEr~------~qQ~~easelq~~mlaS~aALelEk~aHsaTR~qAlaREa~LE 374 (637)
++.++.+....+...|+..+..|+.-..++- .+...|...|++.+=+...+...-...|+....++++=-.+.+
T Consensus 1288 ~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e 1367 (1930)
T KOG0161|consen 1288 KLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFE 1367 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888888888888776654332 5555677788888866666666555556666666655555555
Q ss_pred HHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006637 375 TANADLARALA----AAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT 422 (637)
Q Consensus 375 ~enaeLAkALA----~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a 422 (637)
.......+.+. ..+..+++....+..+......|+.....|++++.++
T Consensus 1368 ~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~ 1419 (1930)
T KOG0161|consen 1368 EEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDL 1419 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 55443333333 3333344444455555555555665556666655554
No 17
>PRK02224 chromosome segregation protein; Provisional
Probab=97.01 E-value=1.1 Score=52.39 Aligned_cols=50 Identities=14% Similarity=0.142 Sum_probs=22.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 006637 356 KQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQT 405 (637)
Q Consensus 356 k~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkv 405 (637)
+..+...-..+..+...|+.+..++...+....+..+.......++..++
T Consensus 525 ~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (880)
T PRK02224 525 IAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEV 574 (880)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33444444445555555555555555554444443333333333333333
No 18
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.99 E-value=0.84 Score=50.43 Aligned_cols=67 Identities=9% Similarity=0.052 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 006637 347 ETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHE 413 (637)
Q Consensus 347 aS~aALelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~e 413 (637)
...+.++.+.........+.......|+.+..++-..+......+......+..++.++..++....
T Consensus 213 ~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~ 279 (562)
T PHA02562 213 ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIK 279 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666655655555555555555554333333333333333333444444444333333
No 19
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.39 Score=53.77 Aligned_cols=167 Identities=19% Similarity=0.183 Sum_probs=115.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhh-
Q 006637 353 ELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMET---NQVAELRQQTELKEVAHEELSQRNSNTHQTGIY- 428 (637)
Q Consensus 353 elEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~---~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~s- 428 (637)
..|.+.|-..=.++..+..+++..|.+++..+-...|-++... .=++.|..+++.+.-....|.+..++..+-...
T Consensus 247 ~ae~kqh~v~~~ales~~sq~~e~~selE~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~k 326 (521)
T KOG1937|consen 247 QAEYKQHLVEYKALESKRSQFEEQNSELEKLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQK 326 (521)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3445556666667777777888888888888777777776554 345566677777777777777776665433211
Q ss_pred HhHHH---HhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-C-chhHHHHHHHHHHHHHHHHHHH-
Q 006637 429 LKRLA---ASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED-P-TEVEIELKRRLGQLTDHLIQKQ- 502 (637)
Q Consensus 429 a~Ql~---a~~~~EaElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~-p-T~~q~ELE~RL~qLTE~LIqKQ- 502 (637)
--++. ...+++.+. =.+++.++..+..+-.++++.+..-..||+.++. | ...-..+..|++.++-. |.||
T Consensus 327 kl~Lr~~l~~~e~e~~e---~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gn-iRKq~ 402 (521)
T KOG1937|consen 327 KLQLREELKNLETEDEE---IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGN-IRKQE 402 (521)
T ss_pred HHHHHHHHhcccchHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhH-HHHHH
Confidence 11221 222333332 1467778888877778888888888999999986 3 33468999999999876 5566
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006637 503 AQVEALSSEKATLAFRIEAVS 523 (637)
Q Consensus 503 TQLEsLsSEK~AL~lQLERle 523 (637)
+.|=.+..|...|+.|++.+.
T Consensus 403 ~DI~Kil~etreLqkq~ns~s 423 (521)
T KOG1937|consen 403 QDIVKILEETRELQKQENSES 423 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999886
No 20
>PRK11637 AmiB activator; Provisional
Probab=96.80 E-value=0.47 Score=51.65 Aligned_cols=15 Identities=20% Similarity=-0.139 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHhc
Q 006637 599 LVCLHLWVIYILLSH 613 (637)
Q Consensus 599 lllLHLwVf~vL~~~ 613 (637)
+++-|---|+.+|.|
T Consensus 363 vii~hg~g~~t~Y~~ 377 (428)
T PRK11637 363 VVVEHGKGDMSLYGY 377 (428)
T ss_pred EEEEeCCCcEEEccC
Confidence 344454334444444
No 21
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.80 E-value=1.2 Score=55.25 Aligned_cols=114 Identities=15% Similarity=0.231 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----------cchhhH---hH
Q 006637 366 ALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH-----------QTGIYL---KR 431 (637)
Q Consensus 366 AlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~-----------Q~~~sa---~Q 431 (637)
.+.+...|+.+..+|...+..+...+.+....+..|..++..++...+.++++..... .....+ +.
T Consensus 879 ~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 958 (1311)
T TIGR00606 879 NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMK 958 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666666666666666666666666666555555433322 111111 11
Q ss_pred -HH--HhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 006637 432 -LA--ASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 479 (637)
Q Consensus 432 -l~--a~~~~EaElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~ 479 (637)
+. ...+....++.++.++..+...+..++..+..+..+|..++..+..
T Consensus 959 ~i~~y~~~~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~ 1009 (1311)
T TIGR00606 959 DIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDT 1009 (1311)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 1222233344455555555555555555555666666666555543
No 22
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.73 E-value=1.4 Score=55.60 Aligned_cols=82 Identities=5% Similarity=0.012 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 447 AEYTFIADKIIQLEDKAKKLEGNIEMTRKEI---EDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVS 523 (637)
Q Consensus 447 ~Els~Le~el~~Le~klqk~E~EIe~LR~~l---s~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERle 523 (637)
.++..+...+..++.++...+..++.+..+- --|.-+..+|+..+....+.+-+++.++..+..+...+...++.+.
T Consensus 397 eqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~ 476 (1486)
T PRK04863 397 SQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFE 476 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444544444444444332 2244455678888888888888888888888888888887777665
Q ss_pred HHHHh
Q 006637 524 RLLDE 528 (637)
Q Consensus 524 rl~ee 528 (637)
..+..
T Consensus 477 ~~~~~ 481 (1486)
T PRK04863 477 QAYQL 481 (1486)
T ss_pred HHHHH
Confidence 44333
No 23
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.59 E-value=2.7 Score=51.43 Aligned_cols=156 Identities=19% Similarity=0.244 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHHHhhchHHHHHHH
Q 006637 366 ALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREIL 445 (637)
Q Consensus 366 AlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~a~~~~EaElE~~ 445 (637)
.+.+..+|++......-.+..+..++-+..+++.++...+.....+++.++..+++..-....+..-. +..+-.....
T Consensus 293 ~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~--~~~~n~i~~~ 370 (1074)
T KOG0250|consen 293 KQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEI--REIENSIRKL 370 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444455544444444322111110000 0000011113
Q ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 446 EAEYTFIADKIIQ--------LEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAF 517 (637)
Q Consensus 446 e~Els~Le~el~~--------Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~l 517 (637)
+.++..++..|.. +..++.+++.+++.|..+++.-......|..-+..+.+-+-..|..++.+.+++..++-
T Consensus 371 k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k 450 (1074)
T KOG0250|consen 371 KKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRK 450 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444444444432 33334455555555555554333334677778888888888888888888888888887
Q ss_pred HHHHHH
Q 006637 518 RIEAVS 523 (637)
Q Consensus 518 QLERle 523 (637)
+++-.+
T Consensus 451 ~i~~~~ 456 (1074)
T KOG0250|consen 451 KIENIS 456 (1074)
T ss_pred HHHHHH
Confidence 777755
No 24
>PRK09039 hypothetical protein; Validated
Probab=96.53 E-value=0.44 Score=51.21 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Q 006637 304 DAIKERENMVARLEGEKQSLEKIL 327 (637)
Q Consensus 304 ~~i~eRe~~va~Le~Ek~~lekll 327 (637)
+.|..++.-+++|+.+...|-.+|
T Consensus 46 ~~i~~~~~eL~~L~~qIa~L~e~L 69 (343)
T PRK09039 46 REISGKDSALDRLNSQIAELADLL 69 (343)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777655555
No 25
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.51 E-value=1.3 Score=48.99 Aligned_cols=12 Identities=17% Similarity=0.055 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 006637 380 LARALAAAQKKL 391 (637)
Q Consensus 380 LAkALA~~QRkL 391 (637)
|+.+|..++..+
T Consensus 253 ~~~~L~~l~~~~ 264 (562)
T PHA02562 253 PSAALNKLNTAA 264 (562)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 26
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.48 E-value=1.6 Score=51.40 Aligned_cols=28 Identities=18% Similarity=0.128 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 496 DHLIQKQAQVEALSSEKATLAFRIEAVS 523 (637)
Q Consensus 496 E~LIqKQTQLEsLsSEK~AL~lQLERle 523 (637)
-.|=.=.-|||-+.........+++.|+
T Consensus 622 saLg~akrq~ei~~~~~~~~d~ei~~lk 649 (697)
T PF09726_consen 622 SALGDAKRQLEIAQGQLRKKDKEIEELK 649 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334455555555555555555554
No 27
>PRK02224 chromosome segregation protein; Provisional
Probab=96.34 E-value=3.2 Score=48.76 Aligned_cols=54 Identities=24% Similarity=0.302 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006637 369 LLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT 422 (637)
Q Consensus 369 REa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a 422 (637)
....++.....+...+..++..++....++..+...+..++.+.+.|..++...
T Consensus 252 ~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~ 305 (880)
T PRK02224 252 ELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLD 305 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344455555666666666666666666666666666666666666666655444
No 28
>PRK09039 hypothetical protein; Validated
Probab=96.20 E-value=1.2 Score=48.01 Aligned_cols=65 Identities=15% Similarity=0.131 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 445 LEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLA 516 (637)
Q Consensus 445 ~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~ 516 (637)
+..+|...........-++..++.+|+.||.++ ..|+..|..+-...-.+|.+++.|..+.+..-
T Consensus 121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Ql-------a~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQL-------AALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555566677777777777775 45666666666666777888888877777664
No 29
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.20 E-value=5.2 Score=49.67 Aligned_cols=73 Identities=15% Similarity=0.115 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 447 AEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPT---EVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIE 520 (637)
Q Consensus 447 ~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT---~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLE 520 (637)
.++..++.++..|+........++.++.. +..-- -.+.+.+.-=..+.-.|-.+|..++.+.+|.+.++++..
T Consensus 623 e~~~~l~~~i~sL~~~~~~~~~~l~k~~e-l~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~~L~~~ 698 (1317)
T KOG0612|consen 623 EIIAELKEEISSLEETLKAGKKELLKVEE-LKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRLRLQDK 698 (1317)
T ss_pred HHHHHHHhHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 44444555555666665555555555444 22100 012222212234555566668888888888888844444
No 30
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.19 E-value=1.8 Score=50.99 Aligned_cols=30 Identities=27% Similarity=0.331 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 485 IELKRRLGQLTDHLIQKQAQVEALSSEKAT 514 (637)
Q Consensus 485 ~ELE~RL~qLTE~LIqKQTQLEsLsSEK~A 514 (637)
.+-..+|..+..+|+.|-.+|+.|-+..+.
T Consensus 625 g~akrq~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 625 GDAKRQLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777888888887777776655443
No 31
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.14 E-value=4.4 Score=48.38 Aligned_cols=169 Identities=17% Similarity=0.267 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchh
Q 006637 348 TMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGI 427 (637)
Q Consensus 348 S~aALelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~ 427 (637)
=+..++.|+..-..--+..+.|..++.....++-.-|..++-.|.-...+. ..|+...+.|+.+|...+....
T Consensus 288 k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~-------~~Lqsdve~Lr~rle~k~~~l~ 360 (775)
T PF10174_consen 288 KMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEA-------EMLQSDVEALRFRLEEKNSQLE 360 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHHHHH
Confidence 367788888887777777777777777777766555555554444444444 4444444555555554431111
Q ss_pred h----HhHHH-HhhchHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-Cch-----hHHHHHH
Q 006637 428 Y----LKRLA-ASKGVEFE-------REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED-PTE-----VEIELKR 489 (637)
Q Consensus 428 s----a~Ql~-a~~~~EaE-------lE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~-pT~-----~q~ELE~ 489 (637)
. +..+. .......| ++.++.++..+..+|..|+..+...+.++..++..+.. |.. ....||.
T Consensus 361 kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEe 440 (775)
T PF10174_consen 361 KKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEE 440 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 1 11111 11122222 24456677777777777888888888878777777762 322 1123331
Q ss_pred ----------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 490 ----------RLGQLTDH-LIQKQAQVEALSSEKATLAFRIEAVS 523 (637)
Q Consensus 490 ----------RL~qLTE~-LIqKQTQLEsLsSEK~AL~lQLERle 523 (637)
+|..+-+. =..++.+++....+..-+...++.++
T Consensus 441 a~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ 485 (775)
T PF10174_consen 441 ALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQ 485 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111111 12445666666666666666666654
No 32
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.11 E-value=2.2 Score=49.04 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 006637 444 ILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE 478 (637)
Q Consensus 444 ~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls 478 (637)
....|...+..++..++.+++.-+++...|+..+.
T Consensus 280 ~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~ 314 (546)
T PF07888_consen 280 QLQQENEALKEQLRSAQEQLQASQQEAELLRKELS 314 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666777777777777777777777777763
No 33
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.98 E-value=0.25 Score=56.34 Aligned_cols=125 Identities=20% Similarity=0.270 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhH----h-HHHHhhchHHHHHHHHHHHHHH
Q 006637 378 ADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYL----K-RLAASKGVEFEREILEAEYTFI 452 (637)
Q Consensus 378 aeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa----~-Ql~a~~~~EaElE~~e~Els~L 452 (637)
.-|...|+.+.+-+++-....+.|+.++..++.+.+.|+..+.++.+....+ . .+......++|...++..+..+
T Consensus 88 ~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~l 167 (546)
T KOG0977|consen 88 AKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKAL 167 (546)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Confidence 4577778888888999889999999999999999999999988886554332 1 1223455566666677777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHH
Q 006637 453 ADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQ 502 (637)
Q Consensus 453 e~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQ 502 (637)
++++..|..+...+..+|+.+|.++..-+.-..+++.+...|.+-|--.+
T Consensus 168 e~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 168 EDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 88877777777888888888888887766666777777777777765544
No 34
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.86 E-value=7.4 Score=48.56 Aligned_cols=76 Identities=12% Similarity=0.103 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 306 IKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALA 385 (637)
Q Consensus 306 i~eRe~~va~Le~Ek~~leklleEr~~qQ~~easelq~~mlaS~aALelEk~aHsaTR~qAlaREa~LE~enaeLAkALA 385 (637)
+......+.++..+...|++-+++....+..-.+ -.+...++.+..+..............+..+...+.+.|.
T Consensus 787 L~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~------~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~ 860 (1311)
T TIGR00606 787 CLTDVTIMERFQMELKDVERKIAQQAAKLQGSDL------DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQ 860 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445667777777777776554433321111 1255666666666666666664544555555555555444
Q ss_pred HH
Q 006637 386 AA 387 (637)
Q Consensus 386 ~~ 387 (637)
..
T Consensus 861 ~L 862 (1311)
T TIGR00606 861 HL 862 (1311)
T ss_pred HH
Confidence 44
No 35
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.85 E-value=0.68 Score=55.93 Aligned_cols=154 Identities=21% Similarity=0.251 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--cchh--hHhHHHHhhchHHHH---
Q 006637 370 LAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH--QTGI--YLKRLAASKGVEFER--- 442 (637)
Q Consensus 370 Ea~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~--Q~~~--sa~Ql~a~~~~EaEl--- 442 (637)
...|+.+.|++.+-|-..+..++++......|++.+..|++++..|+|+..+.. ++.. ....+.+.+ ..+|+
T Consensus 172 ~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalr-e~aer~d~ 250 (1195)
T KOG4643|consen 172 NLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALR-EQAERPDT 250 (1195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH-HhhhcCCC
Confidence 456889999999999999999999999999999999999999999999988864 2221 223333221 11111
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 443 ---------EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTE--VEIELKRRLGQLTDHLIQKQAQVEALSSE 511 (637)
Q Consensus 443 ---------E~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~--~q~ELE~RL~qLTE~LIqKQTQLEsLsSE 511 (637)
+..+.-+-.+++.=+.|...-.-++++|+.+|.+-++-|. ..+.|.+.|+.|-...--=|+++|.|.-|
T Consensus 251 ~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eE 330 (1195)
T KOG4643|consen 251 TYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEE 330 (1195)
T ss_pred ccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 1122222222222233444445677788888888866444 46889999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 006637 512 KATLAFRIEAVSR 524 (637)
Q Consensus 512 K~AL~lQLERler 524 (637)
+..|..+=+.+.-
T Consensus 331 nstLq~q~eqL~~ 343 (1195)
T KOG4643|consen 331 NSTLQVQKEQLDG 343 (1195)
T ss_pred HHHHHHHHHHhhh
Confidence 9999988877653
No 36
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.82 E-value=4 Score=49.40 Aligned_cols=149 Identities=19% Similarity=0.227 Sum_probs=102.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHH
Q 006637 330 RAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLE-------METNQVAELR 402 (637)
Q Consensus 330 r~~qQ~~easelq~~mlaS~aALelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLe-------ee~~rvaELr 402 (637)
|-+=|-....|..+.||+..+.|..|+.+-.-...+|++=..++..+.++.+.++.-+.-.-+ -.++++..|.
T Consensus 259 kmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lk 338 (1243)
T KOG0971|consen 259 KMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALK 338 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 335666677788899999999999999998889999999999999999999888755443333 3334555555
Q ss_pred HHHHHHHHHHHHHHHhhhhhh---cchhh--HhHHH-----------H-----------hhchHHHHHHHHHHHHHHHHH
Q 006637 403 QQTELKEVAHEELSQRNSNTH---QTGIY--LKRLA-----------A-----------SKGVEFEREILEAEYTFIADK 455 (637)
Q Consensus 403 qkve~LE~e~esLRqeL~~a~---Q~~~s--a~Ql~-----------a-----------~~~~EaElE~~e~Els~Le~e 455 (637)
+.++.|+..++=|+.++++-. |-..+ .+|+. . .-....|+|++++|+..+...
T Consensus 339 Er~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~ 418 (1243)
T KOG0971|consen 339 ERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQ 418 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 566666677777777766643 11100 12211 1 112345667788888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Q 006637 456 IIQLEDKAKKLEGNIEMTRKEIE 478 (637)
Q Consensus 456 l~~Le~klqk~E~EIe~LR~~ls 478 (637)
...|..++..+|.-|..+..++.
T Consensus 419 kE~Lsr~~d~aEs~iadlkEQVD 441 (1243)
T KOG0971|consen 419 KERLSRELDQAESTIADLKEQVD 441 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888788887877776663
No 37
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.78 E-value=5.7 Score=47.92 Aligned_cols=32 Identities=31% Similarity=0.395 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 006637 490 RLGQLTDHLIQKQAQVEALSSE---KATLAFRIEA 521 (637)
Q Consensus 490 RL~qLTE~LIqKQTQLEsLsSE---K~AL~lQLER 521 (637)
.+.+|.+.|-+|=..+..+..+ +.++.+.+|+
T Consensus 527 ~~~~l~~~l~~KD~~~~~~~~~~~e~~~~~~e~e~ 561 (980)
T KOG0980|consen 527 QLAQLEDLLKQKDRLAAELVAREEEREALRLEAER 561 (980)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455556666665555554432 3445555555
No 38
>PRK03918 chromosome segregation protein; Provisional
Probab=95.65 E-value=6.3 Score=46.20 Aligned_cols=33 Identities=36% Similarity=0.394 Sum_probs=19.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 006637 296 EKAAAKAGDAIKERENMVARLEGEKQSLEKILE 328 (637)
Q Consensus 296 e~~a~kA~~~i~eRe~~va~Le~Ek~~leklle 328 (637)
+++...|...+++-+.-+..|++.++.++.+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~ 193 (880)
T PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIEE 193 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666666666666655543
No 39
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.65 E-value=8 Score=47.39 Aligned_cols=151 Identities=18% Similarity=0.185 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----cch--hhHhHHH-HhhchH----
Q 006637 372 KLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH-----QTG--IYLKRLA-ASKGVE---- 439 (637)
Q Consensus 372 ~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~-----Q~~--~sa~Ql~-a~~~~E---- 439 (637)
+|+.++-.|.+-.-.++-++.+...+.++|+.-.+.|..+.+.|..++.+.. |.. ...+|+. ...+.+
T Consensus 405 eleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~ 484 (1195)
T KOG4643|consen 405 ELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETE 484 (1195)
T ss_pred HHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555566666555555555555555544421 110 1111111 011111
Q ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHH
Q 006637 440 -----------------FEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQ 502 (637)
Q Consensus 440 -----------------aElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQ 502 (637)
.|+.++.+.+..++..+.+...+....-...+.|++.+.+.-....-|-++|+.|..+ -+|+
T Consensus 485 el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t-~qn~ 563 (1195)
T KOG4643|consen 485 ELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTT-SQNG 563 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-hHHH
Confidence 1222233333333333333333333444444455555544333445566777777777 7788
Q ss_pred HHHHHHHHHH--------------HHHHHHHHHHH
Q 006637 503 AQVEALSSEK--------------ATLAFRIEAVS 523 (637)
Q Consensus 503 TQLEsLsSEK--------------~AL~lQLERle 523 (637)
++||.-..++ ++++++.|.++
T Consensus 564 ~~LEq~~n~lE~~~~elkk~idaL~alrrhke~LE 598 (1195)
T KOG4643|consen 564 ALLEQNNNDLELIHNELKKYIDALNALRRHKEKLE 598 (1195)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777655443 46666666664
No 40
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.63 E-value=5.7 Score=46.12 Aligned_cols=74 Identities=22% Similarity=0.328 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 445 LEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVS 523 (637)
Q Consensus 445 ~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERle 523 (637)
++.++..+..++..-+...+++..+++.+-..+ +-..+=.||...+-..=-=++.|+.+..|-..|+.++..++
T Consensus 452 ~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~-----~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~ 525 (594)
T PF05667_consen 452 LREEIKEIEEEIRQKEELYKQLVKELEKLPKDV-----NRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLT 525 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443332 23556678888888755445789999988888888877765
No 41
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.55 E-value=1.9 Score=45.44 Aligned_cols=32 Identities=22% Similarity=0.182 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 446 EAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 477 (637)
Q Consensus 446 e~Els~Le~el~~Le~klqk~E~EIe~LR~~l 477 (637)
+.++..++.++..++.++...+.+++.++.++
T Consensus 202 ~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~ 233 (423)
T TIGR01843 202 ERERAEAQGELGRLEAELEVLKRQIDELQLER 233 (423)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444433
No 42
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.37 E-value=10 Score=47.09 Aligned_cols=32 Identities=9% Similarity=0.309 Sum_probs=25.1
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 006637 586 RRNPIAKLWSLVYLVCLHLWVIYILLSHSQSS 617 (637)
Q Consensus 586 rR~P~ARllfiiYlllLHLwVf~vL~~~s~~s 617 (637)
+.-++==+..-||+|..||--||-+.|+++..
T Consensus 1133 rk~RldEFm~gf~~Is~kLkemYQmIT~GGdA 1164 (1293)
T KOG0996|consen 1133 RKRRLDEFMAGFNIISMKLKEMYQMITLGGDA 1164 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 33334445677999999999999999999875
No 43
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.32 E-value=3 Score=49.27 Aligned_cols=156 Identities=17% Similarity=0.163 Sum_probs=87.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhH--hHHH
Q 006637 356 KQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYL--KRLA 433 (637)
Q Consensus 356 k~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa--~Ql~ 433 (637)
...|...|.+.+.|...|..+...--+-|..++..++.-...+..|.++++.....++.|.++++..-+..... .-..
T Consensus 553 i~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~ 632 (717)
T PF10168_consen 553 IEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSE 632 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCH
Confidence 35566677777777777777777777777888888877777777788888877778888888777664333110 0011
Q ss_pred HhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 434 ASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIEL-KRRLGQLTDHLIQKQAQVEALSSEK 512 (637)
Q Consensus 434 a~~~~EaElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~EL-E~RL~qLTE~LIqKQTQLEsLsSEK 512 (637)
+.+....|++.++..++.|...|.++..++...+..|+ -......++ ..| +.+.+.+++.|-+==.+|+.+..+.
T Consensus 633 AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~-~~~~~~~~s---~~L~~~Q~~~I~~iL~~~~~~I~~~v~~i 708 (717)
T PF10168_consen 633 AEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE-SQKSPKKKS---IVLSESQKRTIKEILKQQGEEIDELVKQI 708 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccccCCC---ccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333344444444455555555444444444333332 111111122 123 4566666666664444455554444
Q ss_pred HHH
Q 006637 513 ATL 515 (637)
Q Consensus 513 ~AL 515 (637)
..+
T Consensus 709 k~i 711 (717)
T PF10168_consen 709 KNI 711 (717)
T ss_pred HHH
Confidence 433
No 44
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.29 E-value=2.7 Score=43.75 Aligned_cols=92 Identities=21% Similarity=0.267 Sum_probs=39.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 386 AAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKK 465 (637)
Q Consensus 386 ~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~a~~~~EaElE~~e~Els~Le~el~~Le~klqk 465 (637)
++...+......+..++.++..++..+.+++.++....-....+..........-|....+.....+++++..+......
T Consensus 42 ~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~ 121 (239)
T COG1579 42 ALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEK 121 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555666666666655554222111111122222233333333344444444444444444
Q ss_pred HHHHHHHHHHHh
Q 006637 466 LEGNIEMTRKEI 477 (637)
Q Consensus 466 ~E~EIe~LR~~l 477 (637)
++.+|..++..+
T Consensus 122 l~~~i~~l~~~~ 133 (239)
T COG1579 122 LEKEIEDLKERL 133 (239)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 45
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.27 E-value=12 Score=47.12 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHH
Q 006637 282 EREERRKLKEKILAEKAAAKAGDAIKERENMVARLEGEKQS 322 (637)
Q Consensus 282 ~r~~~r~~~~~~~ae~~a~kA~~~i~eRe~~va~Le~Ek~~ 322 (637)
-|++.|.+|-..|.++.+. ....|.+-+.-++.|+..+..
T Consensus 735 aR~~~R~~ri~el~~~Iae-L~~~i~~l~~~l~~l~~r~~~ 774 (1353)
T TIGR02680 735 ARERARLRRIAELDARLAA-VDDELAELARELRALGARQRA 774 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443334433332 234444444555555544444
No 46
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.24 E-value=7.8 Score=44.72 Aligned_cols=70 Identities=21% Similarity=0.277 Sum_probs=37.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 314 ARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARAL 384 (637)
Q Consensus 314 a~Le~Ek~~leklleEr~~qQ~~easelq~~mlaS~aALelEk~aHsaTR~qAlaREa~LE~enaeLAkAL 384 (637)
..|+.+...|+.-|....+.. ....+-...+..+...+..|+..-.....++.+|...|+.++..+..-.
T Consensus 167 ~~l~~~v~~l~~eL~~~~ee~-e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 167 EQLREEVERLEAELEQEEEEM-EQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555444442222211 1222223344556666666666666666777777778877777664443
No 47
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.01 E-value=17 Score=47.26 Aligned_cols=71 Identities=18% Similarity=0.175 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006637 346 METMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH 423 (637)
Q Consensus 346 laS~aALelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~ 423 (637)
++++.-|-.++.+-- .+..+|......+..-|+..|..+.+...++......+..|+.+.+.++++-++.-
T Consensus 1228 ~EsN~~LRee~~~~~-------~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~ 1298 (1822)
T KOG4674|consen 1228 RESNKVLREENEANL-------EKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLL 1298 (1822)
T ss_pred HHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555544332 33455555555555555666666666666666666677777778888888777654
No 48
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=94.82 E-value=9.2 Score=43.41 Aligned_cols=38 Identities=37% Similarity=0.305 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 006637 291 EKILAEKAAAKAGDAIKERENMVARLEGEKQSLEKILE 328 (637)
Q Consensus 291 ~~~~ae~~a~kA~~~i~eRe~~va~Le~Ek~~leklle 328 (637)
.|-.|...|..|..++..=...|.-|-.|...|-..|+
T Consensus 152 ~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~ 189 (522)
T PF05701_consen 152 AKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLE 189 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888888888878888888888777766663
No 49
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=94.71 E-value=9.8 Score=43.21 Aligned_cols=24 Identities=13% Similarity=0.261 Sum_probs=14.4
Q ss_pred cchhhhhhhhhhHHHHHHHHHHhh
Q 006637 564 KKHIGSLLKQLDSIFLAGVVFLRR 587 (637)
Q Consensus 564 ~R~v~sal~~LD~~~lrlgrfLrR 587 (637)
..++..++..+|.+=-+=-..|.|
T Consensus 480 ~kkva~A~aqve~ak~se~e~l~k 503 (522)
T PF05701_consen 480 EKKVAAAMAQVEAAKASEKEILEK 503 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777765444444443
No 50
>PRK11281 hypothetical protein; Provisional
Probab=94.68 E-value=16 Score=45.50 Aligned_cols=32 Identities=13% Similarity=0.311 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 492 GQLTDHLIQKQAQVEALSSEKATLAFRIEAVS 523 (637)
Q Consensus 492 ~qLTE~LIqKQTQLEsLsSEK~AL~lQLERle 523 (637)
+.|++.|++=-..++.+..+.....-+|+++.
T Consensus 288 ~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~ 319 (1113)
T PRK11281 288 LQLSQRLLKATEKLNTLTQQNLRVKNWLDRLT 319 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777666667777777777777777654
No 51
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.66 E-value=4.7 Score=42.05 Aligned_cols=102 Identities=23% Similarity=0.194 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHHHhhchHHHHHHHHHHHHHHHHH
Q 006637 376 ANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADK 455 (637)
Q Consensus 376 enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~a~~~~EaElE~~e~Els~Le~e 455 (637)
.....-++|.+++-.++.....+..++..++.++.+...+..+++++..+...+.......-.+-|..-+..|++.++++
T Consensus 25 ~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r 104 (239)
T COG1579 25 RIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKER 104 (239)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 33456667777777777777777777777777777777777777777766655422223333333444445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 006637 456 IIQLEDKAKKLEGNIEMTRKEI 477 (637)
Q Consensus 456 l~~Le~klqk~E~EIe~LR~~l 477 (637)
+.+|+.++..+..+++.+...+
T Consensus 105 ~~~le~el~~l~~~~~~l~~~i 126 (239)
T COG1579 105 INSLEDELAELMEEIEKLEKEI 126 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554444
No 52
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=94.64 E-value=16 Score=45.41 Aligned_cols=32 Identities=19% Similarity=0.253 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 492 GQLTDHLIQKQAQVEALSSEKATLAFRIEAVS 523 (637)
Q Consensus 492 ~qLTE~LIqKQTQLEsLsSEK~AL~lQLERle 523 (637)
+.|++.|++=-..+..+..++....-+++++.
T Consensus 268 ~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~ 299 (1109)
T PRK10929 268 RELSQALNQQAQRMDLIASQQRQAASQTLQVR 299 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777666677777777777777777764
No 53
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.62 E-value=8.1 Score=41.81 Aligned_cols=62 Identities=26% Similarity=0.404 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 006637 453 ADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQK-QAQVEALSSEKATLAFRIEA 521 (637)
Q Consensus 453 e~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqK-QTQLEsLsSEK~AL~lQLER 521 (637)
..+|..|+......+.++++||+ ..++||+-|.+=-+.||-| |.+++.|.+||..|+.+|+.
T Consensus 141 ~k~i~~Le~e~~~~q~~le~Lr~-------EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 141 QKKIERLEKEKSAKQEELERLRR-------EKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 33344444444444555555555 3367777776666666655 67899999999999966654
No 54
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.57 E-value=16 Score=45.08 Aligned_cols=203 Identities=18% Similarity=0.232 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHH
Q 006637 304 DAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQL---LAKLETANADL 380 (637)
Q Consensus 304 ~~i~eRe~~va~Le~Ek~~leklleEr~~qQ~~easelq~~mlaS~aALelEk~aHsaTR~qAlaR---Ea~LE~enaeL 380 (637)
+.+..=.+.+..+++++..++|=+++- ++.-....+++ .|.+....|.-+ -+|. ..... ...+++.+.-.
T Consensus 221 ~~~~~~~~~i~~~~e~i~~l~k~i~e~-~e~~~~~~~~e-~~~~~l~~Lk~k----~~W~-~V~~~~~ql~~~~~~i~~~ 293 (1074)
T KOG0250|consen 221 ESLDHAKELIDLKEEEIKNLKKKIKEE-EEKLDNLEQLE-DLKENLEQLKAK----MAWA-WVNEVERQLNNQEEEIKKK 293 (1074)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHH
Confidence 444555556666677777766655322 22222222221 123333333222 2232 11111 23345566667
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhH-HHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 006637 381 ARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKR-LAASKGVEFEREILEAEYTFIADKIIQL 459 (637)
Q Consensus 381 AkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Q-l~a~~~~EaElE~~e~Els~Le~el~~L 459 (637)
....+.|+.+++.+...+..+++++...|++...++.+..-..-+...+.+ +...+. |..-.+.++...+..+..+
T Consensus 294 qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~r---e~~~~~~~~~~~~n~i~~~ 370 (1074)
T KOG0250|consen 294 QEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRR---EVNDLKEEIREIENSIRKL 370 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 777788888888888888888888888888887777765444333333322 212221 2222355666666666666
Q ss_pred HHHHHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 460 EDKAKKLEGNIEMTRKEIEDP-TEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLA 516 (637)
Q Consensus 460 e~klqk~E~EIe~LR~~ls~p-T~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~ 516 (637)
......++..|..++.+...- ++...+.+..+..|....-.=|.++.+|..|.+.+.
T Consensus 371 k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~ 428 (1074)
T KOG0250|consen 371 KKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVK 428 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777776332 223456666666666555555555555555555444
No 55
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.34 E-value=19 Score=45.06 Aligned_cols=12 Identities=17% Similarity=0.052 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHH
Q 006637 596 LVYLVCLHLWVI 607 (637)
Q Consensus 596 iiYlllLHLwVf 607 (637)
..||+.+|=|=+
T Consensus 905 t~~~~g~hRqe~ 916 (1317)
T KOG0612|consen 905 TKDVLGLHRQEL 916 (1317)
T ss_pred HHHHHHHHHHHH
Confidence 688899987653
No 56
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.32 E-value=5.2 Score=38.34 Aligned_cols=55 Identities=13% Similarity=0.139 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 364 MEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 418 (637)
Q Consensus 364 ~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqe 418 (637)
..|+.|...+++.+-++..........+...+.++..|+.+|..++..+..++..
T Consensus 10 d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~ 64 (143)
T PF12718_consen 10 DNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEK 64 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566665555555544444444444444444444444444444444433
No 57
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.23 E-value=20 Score=44.77 Aligned_cols=156 Identities=15% Similarity=0.149 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHHHh--hchH
Q 006637 362 TRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAAS--KGVE 439 (637)
Q Consensus 362 TR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~a~--~~~E 439 (637)
-+.....+..+++.+.+.....|-.+++++.....++...+.+...++...+..+..+++++-+...+.++..- ..++
T Consensus 385 ~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~ 464 (1293)
T KOG0996|consen 385 KFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD 464 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566677777777777777777777777777777777777777766666666666665444333222110 0000
Q ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 006637 440 FER-------EILEAEYTFIADKIIQLEDKA-------KKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQV 505 (637)
Q Consensus 440 aEl-------E~~e~Els~Le~el~~Le~kl-------qk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQL 505 (637)
..+ +-.+.|+..++.++..+..++ +-.+.|+..|....+.-+..-.+|..+|..+...+..+++.|
T Consensus 465 e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l 544 (1293)
T KOG0996|consen 465 EILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTEL 544 (1293)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 113344444444444333333 333334433333332222223566677777777777777777
Q ss_pred HHHHHHHHHHHH
Q 006637 506 EALSSEKATLAF 517 (637)
Q Consensus 506 EsLsSEK~AL~l 517 (637)
..+..+...|..
T Consensus 545 ~~~k~~l~~~k~ 556 (1293)
T KOG0996|consen 545 DDLKEELPSLKQ 556 (1293)
T ss_pred HHHHHhhhhHHH
Confidence 766666555443
No 58
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.20 E-value=5.1 Score=37.79 Aligned_cols=115 Identities=16% Similarity=0.209 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 006637 345 MMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQ 424 (637)
Q Consensus 345 mlaS~aALelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q 424 (637)
++..+-.|=..+......++........|..++..+...+.+++..++....+++.+..+...++..+..+...
T Consensus 36 vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~------ 109 (151)
T PF11559_consen 36 VINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAK------ 109 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 45666667777777788888888888888888888888877777777766666666665555555554443333
Q ss_pred chhhHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 006637 425 TGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE 478 (637)
Q Consensus 425 ~~~sa~Ql~a~~~~EaElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls 478 (637)
.+....|+..++. .+.....++.-.+++.+.||++|+..+.
T Consensus 110 ----------~k~~kee~~klk~---~~~~~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 110 ----------LKQEKEELQKLKN---QLQQRKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred ----------HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2222222222121 1112223445567788888888887663
No 59
>PRK11637 AmiB activator; Provisional
Probab=94.18 E-value=11 Score=41.41 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 006637 378 ADLARALAAAQKKLEMETNQVAELRQQTE 406 (637)
Q Consensus 378 aeLAkALA~~QRkLeee~~rvaELrqkve 406 (637)
..+...|...+..+.....++..++.++.
T Consensus 85 ~~~~~~i~~~~~~i~~~~~ei~~l~~eI~ 113 (428)
T PRK11637 85 SQASRKLRETQNTLNQLNKQIDELNASIA 113 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 60
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=93.89 E-value=18 Score=43.94 Aligned_cols=204 Identities=19% Similarity=0.159 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 307 KERENMVARLEGEKQSLEKILEERAKQQV-KEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALA 385 (637)
Q Consensus 307 ~eRe~~va~Le~Ek~~leklleEr~~qQ~-~easelq~~mlaS~aALelEk~aHsaTR~qAlaREa~LE~enaeLAkALA 385 (637)
+.|+..+..|-.|.+.+---+ ++.++-+ .-..+++..|.+-.-+++.. .--..++.+-+..|..+.+.+-+...
T Consensus 329 d~~~~~~~~~~~e~~~~~~~l-~~~~~ear~~~~q~~~ql~~le~~~~e~----q~~~qe~~~e~eqLr~elaql~a~r~ 403 (980)
T KOG0980|consen 329 DPRELQIEQLSREVAQLKAQL-ENLKEEARRRIEQYENQLLALEGELQEQ----QREAQENREEQEQLRNELAQLLASRT 403 (980)
T ss_pred ChhhHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667666666655555433333 1111222 22333444444444444333 33455555666688888888888888
Q ss_pred HHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcch-hhHhHHHHhhchHHHHHHHHHHHHH----HHHHHH
Q 006637 386 AAQKKL---EMETNQVAELRQQTELKEVAHEELSQRNSNTHQTG-IYLKRLAASKGVEFEREILEAEYTF----IADKII 457 (637)
Q Consensus 386 ~~QRkL---eee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~-~sa~Ql~a~~~~EaElE~~e~Els~----Le~el~ 457 (637)
.+++.. ++..+++..++.+...+...+..|+++..++-++- .-.+|+........+.+....++.. +.+...
T Consensus 404 q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~ 483 (980)
T KOG0980|consen 404 QLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAG 483 (980)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776 77777777777777777777777777766654333 2234444333333344322222222 222223
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 458 QLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATL 515 (637)
Q Consensus 458 ~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL 515 (637)
.++.|.....+-++.+|.++..--+.-..|+.-+..+.+.=..+=.+++.+..+|-.+
T Consensus 484 ~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~ 541 (980)
T KOG0980|consen 484 RAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRL 541 (980)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 4455555566666666666643322223333344444444455555666666655443
No 61
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.59 E-value=23 Score=43.33 Aligned_cols=50 Identities=14% Similarity=0.290 Sum_probs=31.0
Q ss_pred HHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 473 TRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAV 522 (637)
Q Consensus 473 LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERl 522 (637)
||.++..-...-.+|..|...-.+++|..+..|=.-..=.+-|.-||.-+
T Consensus 495 LreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~ 544 (1243)
T KOG0971|consen 495 LREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQEL 544 (1243)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444333333467778888888888887777766665555666555443
No 62
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=93.47 E-value=13 Score=40.19 Aligned_cols=64 Identities=23% Similarity=0.308 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 458 QLEDKAKKLEGNIEMTRKEIEDPTEVE-IELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEA 521 (637)
Q Consensus 458 ~Le~klqk~E~EIe~LR~~ls~pT~~q-~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLER 521 (637)
.|+.++.++..|--.|.+.+..-.... .-|.++|..|---...||..||.|..||.-|+-.||.
T Consensus 110 ~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~ 174 (310)
T PF09755_consen 110 DLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQ 174 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH
Confidence 456677777777777777775533221 4566777777666688999999999999999998887
No 63
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.45 E-value=28 Score=43.77 Aligned_cols=98 Identities=18% Similarity=0.288 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHH
Q 006637 306 IKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNN----------TRMEALQLLAKLET 375 (637)
Q Consensus 306 i~eRe~~va~Le~Ek~~leklleEr~~qQ~~easelq~~mlaS~aALelEk~aHsa----------TR~qAlaREa~LE~ 375 (637)
|.-=+.|+.+-.+-+...+-|+ .+++.-.+.|+.++.+|=..-+||++=-++... .-+.++.++.+.++
T Consensus 1527 L~nVd~IL~~T~~di~ra~~L~-s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~ 1605 (1758)
T KOG0994|consen 1527 LPNVDAILSRTKGDIARAENLQ-SEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQE 1605 (1758)
T ss_pred cccHHHHHHhhhhhHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3333566677777777777666 445555556666666664444444433333222 22345556666666
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 006637 376 ANADLARALAAAQKKLEMETNQVAELRQQ 404 (637)
Q Consensus 376 enaeLAkALA~~QRkLeee~~rvaELrqk 404 (637)
+-+..++.+..+-..+.+....+.+|+.+
T Consensus 1606 ~t~~aE~~~~~a~q~~~eL~~~~e~lk~~ 1634 (1758)
T KOG0994|consen 1606 ETAAAEKLATSATQQLGELETRMEELKHK 1634 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666655555555555555555433
No 64
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=93.16 E-value=7.2 Score=37.71 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 006637 372 KLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHE 413 (637)
Q Consensus 372 ~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~e 413 (637)
.++.+..++...++..++.+++....+.++...+..++....
T Consensus 78 ~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~ 119 (191)
T PF04156_consen 78 RLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQ 119 (191)
T ss_pred hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555544444433
No 65
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.90 E-value=11 Score=37.82 Aligned_cols=150 Identities=21% Similarity=0.242 Sum_probs=79.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHHHhhc
Q 006637 358 RHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKG 437 (637)
Q Consensus 358 aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~a~~~ 437 (637)
=++..=..=+.=...|..+.+++-+-.....+.+.+-..+...|.+-+..++.+...|+.++.....-..++..+
T Consensus 17 YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~----- 91 (201)
T PF13851_consen 17 YYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNL----- 91 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 333333333444455555555555555555555555555555666666666666666666666554222222111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCch-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 438 VEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE-------DPTE-VEIELKRRLGQLTDHLIQKQAQVEALS 509 (637)
Q Consensus 438 ~EaElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls-------~pT~-~q~ELE~RL~qLTE~LIqKQTQLEsLs 509 (637)
..-+..++.++..++-+...|+.+..+++.|-..|..... +.+. -..-||++|..|++.|=.|++||..+.
T Consensus 92 -k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl 170 (201)
T PF13851_consen 92 -KARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVL 170 (201)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111122333334444444444444444444444443332 1222 246789999999999999999998877
Q ss_pred HHHH
Q 006637 510 SEKA 513 (637)
Q Consensus 510 SEK~ 513 (637)
+--+
T Consensus 171 ~~~n 174 (201)
T PF13851_consen 171 AAAN 174 (201)
T ss_pred HHcC
Confidence 6433
No 66
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=92.85 E-value=13 Score=38.21 Aligned_cols=151 Identities=17% Similarity=0.207 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHHHhhchHHHHH
Q 006637 364 MEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFERE 443 (637)
Q Consensus 364 ~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~a~~~~EaElE 443 (637)
+-++.|..++...+.+...+-....|..-.-.++...++.++..+++++...+.--+++..+...+.. . +-
T Consensus 21 e~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVar--k-------L~ 91 (205)
T KOG1003|consen 21 DRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVAR--K-------LV 91 (205)
T ss_pred HHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-------HH
Confidence 34566666666666666666555555555555666666666666666666554433333211111000 0 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 444 ILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE-------DPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLA 516 (637)
Q Consensus 444 ~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls-------~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~ 516 (637)
+++.+|...+.....-+.++..++.++-.+.+.+. ...+....++..|+.||+.|=+=-+-.|-+..-.+.|.
T Consensus 92 iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLe 171 (205)
T KOG1003|consen 92 IIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLE 171 (205)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHc
Confidence 23333333333333334444455555555544443 34445678899999999999866666777766666666
Q ss_pred HHHHHHH
Q 006637 517 FRIEAVS 523 (637)
Q Consensus 517 lQLERle 523 (637)
...++++
T Consensus 172 ke~DdlE 178 (205)
T KOG1003|consen 172 KERDDLE 178 (205)
T ss_pred ccHHHHH
Confidence 6666664
No 67
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=92.81 E-value=35 Score=43.21 Aligned_cols=75 Identities=13% Similarity=0.092 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 445 LEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAV 522 (637)
Q Consensus 445 ~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERl 522 (637)
++..+...+.++..++.++...+.+++.++..+... ..++..+|.++-..|-.-+.++..+..+..++.-.+.++
T Consensus 887 ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~---~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a 961 (1353)
T TIGR02680 887 AESDAREAAEDAAEARAEAEEASLRLRTLEESVGAM---VDEIRARLAETRAALASGGRELPRLAEALATAEEARGRA 961 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555555554321 245666666666666666666666666666666555544
No 68
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=92.80 E-value=10 Score=40.83 Aligned_cols=144 Identities=15% Similarity=0.213 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHhhhhhhcchhhHhH-HHHhhchHHHHHHHHHHHH
Q 006637 379 DLARALAAAQKKLEMETNQVAELRQQT-------ELKEVAHEELSQRNSNTHQTGIYLKR-LAASKGVEFEREILEAEYT 450 (637)
Q Consensus 379 eLAkALA~~QRkLeee~~rvaELrqkv-------e~LE~e~esLRqeL~~a~Q~~~sa~Q-l~a~~~~EaElE~~e~Els 450 (637)
.+++.+..+...|.+.+++.+-|..++ +.||.+.++++-+|..+-+.. .+ ..+.+..|..+.+.+.|.-
T Consensus 53 ~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~---dqsq~skrdlelafqr~rdEw~ 129 (305)
T PF14915_consen 53 TLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDH---DQSQTSKRDLELAFQRARDEWV 129 (305)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHhhHHHHHHHHHHHhhHHH
Confidence 456666777777888887777777776 446666666666655542221 11 1133444444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 451 FIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDE 528 (637)
Q Consensus 451 ~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERlerl~ee 528 (637)
.+++++. ..+..+.+..+.|..+++..-.--..|+..||..++.|-.|--.||.+..+..--+.|+..++..++.
T Consensus 130 ~lqdkmn---~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qn 204 (305)
T PF14915_consen 130 RLQDKMN---SDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQN 204 (305)
T ss_pred HHHHHhc---chHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555441 12345555566666666542223367899999999999999999999999999999998888765444
No 69
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.79 E-value=15 Score=39.05 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 006637 304 DAIKERENMVARLEGEKQ 321 (637)
Q Consensus 304 ~~i~eRe~~va~Le~Ek~ 321 (637)
.-|.+-..++..++.+-.
T Consensus 82 ~~I~egr~~~~~~E~~~~ 99 (325)
T PF08317_consen 82 KYISEGRQIFEEIEEETY 99 (325)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 556666666666666543
No 70
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.63 E-value=22 Score=40.33 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006637 346 METMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT 422 (637)
Q Consensus 346 laS~aALelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a 422 (637)
+-+.+++..|..+|...- --++|++.|+.+|+. -.++...-.+.+|+..+.-|...++.|--+.+..
T Consensus 271 lraeE~l~Ee~rrhrEil-~k~eReasle~Enlq---------mr~qqleeentelRs~~arlksl~dklaee~qr~ 337 (502)
T KOG0982|consen 271 LRAEESLSEEERRHREIL-IKKEREASLEKENLQ---------MRDQQLEEENTELRSLIARLKSLADKLAEEDQRS 337 (502)
T ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 566788999989996542 346788888887753 4455555567778887777777777665554433
No 71
>PRK11281 hypothetical protein; Provisional
Probab=92.63 E-value=16 Score=45.47 Aligned_cols=113 Identities=21% Similarity=0.181 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhH---h-HHH--HhhchH
Q 006637 366 ALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYL---K-RLA--ASKGVE 439 (637)
Q Consensus 366 AlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa---~-Ql~--a~~~~E 439 (637)
...-+.+||....++...|+..|..+.+...+...++..-+.-+....+.+++++.+.+..... . .+. .....+
T Consensus 119 ~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ 198 (1113)
T PRK11281 119 STLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQ 198 (1113)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHH
Confidence 3334466888888888888889999999988888888888888888888888888776433211 0 011 233344
Q ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhC
Q 006637 440 FEREILEAEYTFIADKII--------------QLEDKAKKLEGNIEMTRKEIE 478 (637)
Q Consensus 440 aElE~~e~Els~Le~el~--------------~Le~klqk~E~EIe~LR~~ls 478 (637)
+|+..++.+..+...++. .+..+++..+.+|+.+...+.
T Consensus 199 ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in 251 (1113)
T PRK11281 199 AEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAIN 251 (1113)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444444444444332 122444555556666655553
No 72
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=92.59 E-value=21 Score=40.14 Aligned_cols=40 Identities=30% Similarity=0.331 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 006637 373 LETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAH 412 (637)
Q Consensus 373 LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~ 412 (637)
|+.++..+..+|...+..+......++.+...+..++.+.
T Consensus 71 ~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 71 LETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444
No 73
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=92.35 E-value=37 Score=42.36 Aligned_cols=18 Identities=22% Similarity=0.137 Sum_probs=10.7
Q ss_pred ccCCccCCCcCCCCCCCC
Q 006637 177 NDGKNINGQDVKPQDGRS 194 (637)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~ 194 (637)
+=||+|+..=+...|..|
T Consensus 555 tIGKVid~eLL~r~dL~P 572 (1201)
T PF12128_consen 555 TIGKVIDEELLYRTDLEP 572 (1201)
T ss_pred HhHhhCCHHHhcCCCCCC
Confidence 347777766555555554
No 74
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.26 E-value=44 Score=43.01 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH
Q 006637 307 KERENMVARLEGEKQSLEKILE 328 (637)
Q Consensus 307 ~eRe~~va~Le~Ek~~leklle 328 (637)
.|=+.-+..|+.+.+.+++-++
T Consensus 317 ~ELe~rL~kLEkQaEkA~kyle 338 (1486)
T PRK04863 317 AELNEAESDLEQDYQAASDHLN 338 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555443
No 75
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.24 E-value=17 Score=38.30 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006637 505 VEALSSEKATLAFRIEAV 522 (637)
Q Consensus 505 LEsLsSEK~AL~lQLERl 522 (637)
+..+..+...+..+++.+
T Consensus 248 l~~~~~~l~~~~~~l~~~ 265 (423)
T TIGR01843 248 LTEAQARLAELRERLNKA 265 (423)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444444
No 76
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=92.15 E-value=15 Score=37.43 Aligned_cols=62 Identities=19% Similarity=0.261 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 446 EAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEA 507 (637)
Q Consensus 446 e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEs 507 (637)
+.|.+.|..+|+.|+.+-.++..+++.+......-......|..+++.-...+.+|-+-+..
T Consensus 94 EkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e 155 (193)
T PF14662_consen 94 EKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSE 155 (193)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555444332112344555555444444444333333
No 77
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=92.03 E-value=25 Score=39.64 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006637 442 REILEAEYTFIADKIIQLEDKAK 464 (637)
Q Consensus 442 lE~~e~Els~Le~el~~Le~klq 464 (637)
+-.++.|+++|+.+|..|.+.++
T Consensus 514 LRVKEsEiQYLKqEissLkDELQ 536 (593)
T KOG4807|consen 514 LRVKESEIQYLKQEISSLKDELQ 536 (593)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHH
Confidence 34577888888887766555544
No 78
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=91.60 E-value=33 Score=40.17 Aligned_cols=31 Identities=16% Similarity=0.182 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcch
Q 006637 396 NQVAELRQQTELKEVAHEELSQRNSNTHQTG 426 (637)
Q Consensus 396 ~rvaELrqkve~LE~e~esLRqeL~~a~Q~~ 426 (637)
..+.+|+.+...++.+...+..+....|...
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v 318 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTMLANHPRV 318 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHH
Confidence 4566666666666666666666655555443
No 79
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.57 E-value=43 Score=41.51 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHhhhhhhcchhhHhHHHHhh
Q 006637 361 NTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAEL----RQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASK 436 (637)
Q Consensus 361 aTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaEL----rqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~a~~ 436 (637)
.+..+...+.-++++++-+..+++-.|+-++......+... +.++..++.++..++++++.........-+...
T Consensus 741 ~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e-- 818 (1174)
T KOG0933|consen 741 DDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYE-- 818 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 34445555566666666666666666666664333333222 122334444444444444433222111111101
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 006637 437 GVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE 478 (637)
Q Consensus 437 ~~EaElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls 478 (637)
..+.|.+.++.|++.++..+..++.++..+..++..++..+.
T Consensus 819 ~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~ 860 (1174)
T KOG0933|consen 819 RLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVD 860 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122333344566666666666666666666666666665553
No 80
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=91.48 E-value=16 Score=37.50 Aligned_cols=92 Identities=16% Similarity=0.177 Sum_probs=55.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHhhhhhhcchh----hHhHHH-HhhchHHHHHHHHHHHHHHHHH
Q 006637 388 QKKLEMETNQVAELRQQTELKEVAH-------EELSQRNSNTHQTGI----YLKRLA-ASKGVEFEREILEAEYTFIADK 455 (637)
Q Consensus 388 QRkLeee~~rvaELrqkve~LE~e~-------esLRqeL~~a~Q~~~----sa~Ql~-a~~~~EaElE~~e~Els~Le~e 455 (637)
+|.+=.+..+|+.|.++++..+.++ =+||..+....-... .+..+. +...-..|++.|+.|++-...+
T Consensus 2 ~WevCqk~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~E 81 (202)
T PF06818_consen 2 KWEVCQKSGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNE 81 (202)
T ss_pred cchHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCH
Confidence 4555566666777766654433332 233333332221111 011111 2334456777889999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Q 006637 456 IIQLEDKAKKLEGNIEMTRKEIED 479 (637)
Q Consensus 456 l~~Le~klqk~E~EIe~LR~~ls~ 479 (637)
...|..++..++.||..||..+..
T Consensus 82 a~lLrekl~~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 82 AELLREKLGQLEAELAELREELAC 105 (202)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHh
Confidence 888999999999999999988864
No 81
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=91.32 E-value=34 Score=39.77 Aligned_cols=104 Identities=22% Similarity=0.238 Sum_probs=54.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 311 NMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKK 390 (637)
Q Consensus 311 ~~va~Le~Ek~~leklleEr~~qQ~~easelq~~mlaS~aALelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRk 390 (637)
.-+.+|..|...|.+-+++-++.-...-+.+- ..+.....++.|..--.........=+..|..+|.-+-..|..+...
T Consensus 113 ~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~-~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ 191 (546)
T KOG0977|consen 113 IEITKLREELKELRKKLEKAEKERRGAREKLD-DYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQ 191 (546)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHH-HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34667777777777666544322111111111 12334444555544444444444445556677777777888888888
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH
Q 006637 391 LEMETNQVAELRQQTELKEVAHEEL 415 (637)
Q Consensus 391 Leee~~rvaELrqkve~LE~e~esL 415 (637)
+++++..--.+.-++..|..+++-+
T Consensus 192 ld~Etllr~d~~n~~q~Lleel~f~ 216 (546)
T KOG0977|consen 192 LDDETLLRVDLQNRVQTLLEELAFL 216 (546)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 8777754444444444333333333
No 82
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=91.25 E-value=0.06 Score=62.24 Aligned_cols=109 Identities=24% Similarity=0.340 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 006637 304 DAIKERENMVARLEGEKQSLEKILEERA--KQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLA 381 (637)
Q Consensus 304 ~~i~eRe~~va~Le~Ek~~leklleEr~--~qQ~~easelq~~mlaS~aALelEk~aHsaTR~qAlaREa~LE~enaeLA 381 (637)
..++++.+=|.+||.+.+..-|=|++-. +.|.++..+-....|++...||.|+.+-++.+.+ ..+++.++.+|.
T Consensus 301 D~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~q----le~~k~qi~eLe 376 (713)
T PF05622_consen 301 DELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQ----LEEYKKQIQELE 376 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHH
Confidence 6788888889999999999888888777 8889899988889999999999999887766644 346777788888
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 006637 382 RALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 416 (637)
Q Consensus 382 kALA~~QRkLeee~~rvaELrqkve~LE~e~esLR 416 (637)
..+...++..+...-++..|.+++..++.+.+.+.
T Consensus 377 ~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~ 411 (713)
T PF05622_consen 377 QKLSEESRRADKLEFENKQLEEKLEALEEEKERLQ 411 (713)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777777777666666666666665554444443
No 83
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=91.22 E-value=19 Score=36.74 Aligned_cols=43 Identities=26% Similarity=0.203 Sum_probs=25.7
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 435 SKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 477 (637)
Q Consensus 435 ~~~~EaElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~l 477 (637)
...++.|++.++.....++.+-..|..+.+.++.|.+-|-..+
T Consensus 62 aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i 104 (193)
T PF14662_consen 62 AKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEI 104 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666555555555554444
No 84
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=91.20 E-value=8.7 Score=39.73 Aligned_cols=47 Identities=28% Similarity=0.353 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 372 KLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 418 (637)
Q Consensus 372 ~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqe 418 (637)
.|+...-.+..-...++..|......+..|..+....+.+...|.+.
T Consensus 9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k 55 (246)
T PF00769_consen 9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQK 55 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444555555555556666666665555555544444
No 85
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=90.85 E-value=24 Score=41.32 Aligned_cols=13 Identities=23% Similarity=0.153 Sum_probs=5.7
Q ss_pred HHHHHHHHHhHHH
Q 006637 294 LAEKAAAKAGDAI 306 (637)
Q Consensus 294 ~ae~~a~kA~~~i 306 (637)
+|.++++.-+++.
T Consensus 168 ~Aa~iaN~la~~Y 180 (754)
T TIGR01005 168 LAAAIPDAIAAAY 180 (754)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444333
No 86
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=90.50 E-value=15 Score=34.34 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 487 LKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAV 522 (637)
Q Consensus 487 LE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERl 522 (637)
.+.+=..|...+-.-+..++.|...+.-|.-|||.+
T Consensus 96 w~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 96 WEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444555555555677778888888888887764
No 87
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=90.22 E-value=16 Score=38.82 Aligned_cols=117 Identities=22% Similarity=0.211 Sum_probs=76.2
Q ss_pred HhHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 006637 333 QQVKEASELQTSMMETM----DAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELK 408 (637)
Q Consensus 333 qQ~~easelq~~mlaS~----aALelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~L 408 (637)
++.+.+-+|-+.+..+= +.|.-|. -+...|+.+.+|-.++..--..+..++...+..++.-...+..+......|
T Consensus 117 ~dlk~~R~Laseit~~GA~LydlL~kE~-~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~L 195 (267)
T PF10234_consen 117 QDLKAARQLASEITQRGASLYDLLGKEV-ELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANL 195 (267)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhchH-hHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444434443333 3355554 567789999999999988888888898888888888888888888887788
Q ss_pred HHHHHHHHHhhhhhhcchhhHhHHHHhhchHHHHHHHHHHHHHH
Q 006637 409 EVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFI 452 (637)
Q Consensus 409 E~e~esLRqeL~~a~Q~~~sa~Ql~a~~~~EaElE~~e~Els~L 452 (637)
+..++.-+++|+-.+++...+..+--+ .-.|.|.++.||+.+
T Consensus 196 e~KIekkk~ELER~qKRL~sLq~vRPA--fmdEyEklE~EL~~l 237 (267)
T PF10234_consen 196 EAKIEKKKQELERNQKRLQSLQSVRPA--FMDEYEKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChH--HHHHHHHHHHHHHHH
Confidence 888877777777776665444332211 223334445555443
No 88
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=90.09 E-value=34 Score=37.79 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Q 006637 400 ELRQQTELKEVAHEELSQRNSNTH 423 (637)
Q Consensus 400 ELrqkve~LE~e~esLRqeL~~a~ 423 (637)
.+++++..++.++..+..+...-|
T Consensus 251 ~l~~~l~~l~~~l~~l~~~y~~~h 274 (498)
T TIGR03007 251 ELDGRIEALEKQLDALRLRYTDKH 274 (498)
T ss_pred chHHHHHHHHHHHHHHHHHhcccC
Confidence 344444455555555554444433
No 89
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=90.04 E-value=46 Score=39.20 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 006637 444 ILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPT 481 (637)
Q Consensus 444 ~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT 481 (637)
.+..|+..++..|.+|+.++.....+|+.|+..+..++
T Consensus 307 S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~s 344 (629)
T KOG0963|consen 307 SLVEEREKHKAQISALEKELKAKISELEELKEKLNSRS 344 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 35566666777777777777777777777777776654
No 90
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=89.98 E-value=16 Score=43.52 Aligned_cols=57 Identities=23% Similarity=0.223 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006637 367 LQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH 423 (637)
Q Consensus 367 laREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~ 423 (637)
..|..+|+.+.-.+-..+++++-..+-......+|....+.+|.+...||.++.++.
T Consensus 33 ~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K 89 (717)
T PF09730_consen 33 QQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYK 89 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777788888888888888888888888888888888888877765
No 91
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=89.90 E-value=26 Score=36.22 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 485 IELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAV 522 (637)
Q Consensus 485 ~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERl 522 (637)
..+|..|..|...+-......+.|..-|-+|...+..-
T Consensus 265 ~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatY 302 (312)
T PF00038_consen 265 AELEEELAELREEMARQLREYQELLDVKLALDAEIATY 302 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44555555555555555555555555555555554443
No 92
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=89.64 E-value=28 Score=37.29 Aligned_cols=27 Identities=22% Similarity=0.495 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 006637 452 IADKIIQLEDKAKKLEGNIEMTRKEIE 478 (637)
Q Consensus 452 Le~el~~Le~klqk~E~EIe~LR~~ls 478 (637)
+-..++.|.+.++.+.+|++--.++-+
T Consensus 162 llesvqRLkdEardlrqelavr~kq~E 188 (333)
T KOG1853|consen 162 LLESVQRLKDEARDLRQELAVRTKQTE 188 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334455666666666666654444433
No 93
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=89.59 E-value=65 Score=40.30 Aligned_cols=24 Identities=13% Similarity=0.548 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCc
Q 006637 458 QLEDKAKKLEGNIEMTRKEIEDPT 481 (637)
Q Consensus 458 ~Le~klqk~E~EIe~LR~~ls~pT 481 (637)
.+..+...+..++..+...+.+|+
T Consensus 439 ~~~~~~~~~~~~l~~l~~~~~~~~ 462 (1201)
T PF12128_consen 439 ELQEQREQLKSELAELKQQLKNPQ 462 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcC
Confidence 445555566666677777776643
No 94
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=89.46 E-value=60 Score=39.67 Aligned_cols=127 Identities=14% Similarity=0.105 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcch-------hhHhHHHHhhchHHH----
Q 006637 373 LETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTG-------IYLKRLAASKGVEFE---- 441 (637)
Q Consensus 373 LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~-------~sa~Ql~a~~~~EaE---- 441 (637)
|+.+|..+.+-+++.|..|-+....+..|..+...||.+.+.+-......++.. .++..+.+.++.+.+
T Consensus 321 lh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn 400 (1265)
T KOG0976|consen 321 LHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKN 400 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666655555555555544444443333333222 222222222222222
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch-------------h-HHHHHHHHHHHHHHHH
Q 006637 442 ----REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTE-------------V-EIELKRRLGQLTDHLI 499 (637)
Q Consensus 442 ----lE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~-------------~-q~ELE~RL~qLTE~LI 499 (637)
++..+..+...+.+++.-++++-.+-.++-++-.+++++.. . ..+|=.||+.|.++|-
T Consensus 401 ~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle 476 (1265)
T KOG0976|consen 401 HIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLE 476 (1265)
T ss_pred hhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChh
Confidence 12233334444555555566666777777777777765322 1 2555567777766664
No 95
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=89.32 E-value=10 Score=39.25 Aligned_cols=59 Identities=15% Similarity=0.190 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006637 363 RMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSN 421 (637)
Q Consensus 363 R~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~ 421 (637)
+.+...|+..++.++.....+|...+..+.....+...++..-..|+.....+.+..+.
T Consensus 7 k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~r 65 (246)
T PF00769_consen 7 KQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQR 65 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677788888888888888888888777766655555555555555555444444333
No 96
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=89.27 E-value=33 Score=36.52 Aligned_cols=66 Identities=15% Similarity=0.213 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH
Q 006637 456 IIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLI---------------QKQAQVEALSSEKATLAFRIE 520 (637)
Q Consensus 456 l~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LI---------------qKQTQLEsLsSEK~AL~lQLE 520 (637)
+..|+.++...+.++..++.......|.-..++.++..|..+|- .++.+++.|..|....+-.++
T Consensus 216 i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~ 295 (362)
T TIGR01010 216 ISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLK 295 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666664443223333444444444444443 334455555555555444444
Q ss_pred H
Q 006637 521 A 521 (637)
Q Consensus 521 R 521 (637)
.
T Consensus 296 ~ 296 (362)
T TIGR01010 296 A 296 (362)
T ss_pred H
Confidence 3
No 97
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=89.14 E-value=21 Score=34.67 Aligned_cols=26 Identities=15% Similarity=0.082 Sum_probs=13.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 393 METNQVAELRQQTELKEVAHEELSQR 418 (637)
Q Consensus 393 ee~~rvaELrqkve~LE~e~esLRqe 418 (637)
.-....+.|...+..|+.+++....+
T Consensus 14 ~~~~e~dsle~~v~~LEreLe~~q~~ 39 (140)
T PF10473_consen 14 ESESEKDSLEDHVESLERELEMSQEN 39 (140)
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHh
Confidence 33445555555555555555544443
No 98
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=89.10 E-value=30 Score=35.79 Aligned_cols=67 Identities=22% Similarity=0.187 Sum_probs=41.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 351 AFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 417 (637)
Q Consensus 351 ALelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRq 417 (637)
.++.+...-...-.++..+..+.......+..-|..+...++..+.....|+.++..|+.+++-+++
T Consensus 72 ~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~ 138 (312)
T PF00038_consen 72 RLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQ 138 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHh
Confidence 3455544444444555555555566666666667777777777777666777666666666665555
No 99
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.87 E-value=71 Score=39.74 Aligned_cols=119 Identities=18% Similarity=0.219 Sum_probs=65.8
Q ss_pred HHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHH--------HHHHHHHHHHHHhHH-------HHH
Q 006637 300 AKAGDAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMM--------ETMDAFELEKQRHNN-------TRM 364 (637)
Q Consensus 300 ~kA~~~i~eRe~~va~Le~Ek~~leklleEr~~qQ~~easelq~~ml--------aS~aALelEk~aHsa-------TR~ 364 (637)
.+-+.-|.|| +-.||.||.+|++-= ++.+ +.-.|+=+|. .-+.+|+..+..-.. .-.
T Consensus 190 ~ell~yieer---LreLEeEKeeL~~Yq-kldk----~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~ 261 (1200)
T KOG0964|consen 190 NELLKYIEER---LRELEEEKEELEKYQ-KLDK----ERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALD 261 (1200)
T ss_pred HHHHHHHHHH---HHHHHHhHHHHHHHH-HHHH----hHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3344555555 667889999887654 2222 2222333331 112223322222111 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcch
Q 006637 365 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTG 426 (637)
Q Consensus 365 qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~ 426 (637)
.+..+-..|..+..++...|.......+...++-...-++-..|+....+|++++.--.|..
T Consensus 262 ~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r 323 (1200)
T KOG0964|consen 262 KVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQR 323 (1200)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhh
Confidence 34555566677777777777777776666666655655666667888888888877655444
No 100
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=88.48 E-value=22 Score=35.34 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006637 371 AKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH 423 (637)
Q Consensus 371 a~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~ 423 (637)
.-|+..+.++...|..++..+.........|+.++...+..+..+..+...+-
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al 78 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELAL 78 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666667777777777777777777777777777777777776666655553
No 101
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=88.44 E-value=66 Score=38.90 Aligned_cols=55 Identities=31% Similarity=0.321 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 363 RMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 417 (637)
Q Consensus 363 R~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRq 417 (637)
...-..-...|+.+-..+.-.|+.|+..++....++-++++.+..|+.++..++.
T Consensus 591 ~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~ke 645 (769)
T PF05911_consen 591 KKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKE 645 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556677777778888888888888888888888888887777777764443
No 102
>PF14992 TMCO5: TMCO5 family
Probab=88.37 E-value=35 Score=36.67 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 006637 303 GDAIKERENMVARLEGEKQSLEKILEERAKQQ 334 (637)
Q Consensus 303 ~~~i~eRe~~va~Le~Ek~~leklleEr~~qQ 334 (637)
++-|.+.|..+-+|+.|....-.++++..+..
T Consensus 24 L~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~ 55 (280)
T PF14992_consen 24 LQKIQEKEGAIQSLEREITKMDHIADRSEEED 55 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCchhHHh
Confidence 47789999999999999988777776665443
No 103
>PRK03918 chromosome segregation protein; Provisional
Probab=88.35 E-value=60 Score=38.29 Aligned_cols=63 Identities=16% Similarity=0.283 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 464 KKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDE 528 (637)
Q Consensus 464 qk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERlerl~ee 528 (637)
..+..+++.++..+.... ...|...+..+....-..+..++.+..+...+.-.+..++...+.
T Consensus 368 ~~~~~~l~~l~~~l~~~~--~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~ 430 (880)
T PRK03918 368 KAKKEELERLKKRLTGLT--PEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEE 430 (880)
T ss_pred HHHHHHHHHHHHHhcccC--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345555555554221 234555555555555555666666666666666655555543333
No 104
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=88.20 E-value=44 Score=36.92 Aligned_cols=55 Identities=11% Similarity=0.075 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006637 367 LQLLAKLETANADLARALAAAQKKLE--------METNQVAELRQQTELKEVAHEELSQRNSN 421 (637)
Q Consensus 367 laREa~LE~enaeLAkALA~~QRkLe--------ee~~rvaELrqkve~LE~e~esLRqeL~~ 421 (637)
..+..+++.+..+..++|...+.+-. ....++..+.+++...+.+...++..+..
T Consensus 167 ~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~ 229 (498)
T TIGR03007 167 DEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDA 229 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555554432211 11134445555555444444444444433
No 105
>PRK10884 SH3 domain-containing protein; Provisional
Probab=88.15 E-value=8.4 Score=39.17 Aligned_cols=26 Identities=15% Similarity=0.129 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 366 ALQLLAKLETANADLARALAAAQKKL 391 (637)
Q Consensus 366 AlaREa~LE~enaeLAkALA~~QRkL 391 (637)
+..|..+||.+.+++...|+.+....
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~ 116 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTW 116 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34556666666666666666655443
No 106
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=88.05 E-value=68 Score=38.57 Aligned_cols=80 Identities=20% Similarity=0.251 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch--------hHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q 006637 445 LEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTE--------VEIELKRRLGQLTDHLIQKQAQV----EALSSEK 512 (637)
Q Consensus 445 ~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~--------~q~ELE~RL~qLTE~LIqKQTQL----EsLsSEK 512 (637)
.+.+|.-+...+..|+.++...++-..-++..+...+. .+.+|=.++..|-+.|-.|-.++ +-+..|+
T Consensus 535 q~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei 614 (961)
T KOG4673|consen 535 QKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEI 614 (961)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444456666666666655555554421111 13444455556666665554444 3467788
Q ss_pred HHHHHHHHHHHH
Q 006637 513 ATLAFRIEAVSR 524 (637)
Q Consensus 513 ~AL~lQLERler 524 (637)
--|..||+..++
T Consensus 615 ~~LqrRlqaaE~ 626 (961)
T KOG4673|consen 615 EDLQRRLQAAER 626 (961)
T ss_pred HHHHHHHHHHHH
Confidence 888888887764
No 107
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=87.98 E-value=11 Score=40.35 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 486 ELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSR 524 (637)
Q Consensus 486 ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERler 524 (637)
++=..+..+.-.|++.+...+++........-+|+++++
T Consensus 96 ~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 96 EYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555667777888888888998888888888888864
No 108
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=87.96 E-value=32 Score=34.71 Aligned_cols=67 Identities=24% Similarity=0.333 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------Cc-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 440 FEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED-------PT-EVEIELKRRLGQLTDHLIQKQAQVE 506 (637)
Q Consensus 440 aElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~-------pT-~~q~ELE~RL~qLTE~LIqKQTQLE 506 (637)
.|.-.++..++-.++....++.++++.+.+|..++..+.+ .. +.-.+|..+|..++..|-.+-..+.
T Consensus 68 eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~ 142 (194)
T PF15619_consen 68 EEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQ 142 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444456666666666666677777777777776666643 11 1235566666666555554444333
No 109
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=87.52 E-value=34 Score=34.53 Aligned_cols=12 Identities=8% Similarity=0.058 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 006637 600 VCLHLWVIYILL 611 (637)
Q Consensus 600 llLHLwVf~vL~ 611 (637)
.+|.-=|.++.+
T Consensus 262 ~lLn~nI~~L~~ 273 (302)
T PF10186_consen 262 FLLNKNIAQLCF 273 (302)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 110
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=87.41 E-value=83 Score=38.86 Aligned_cols=82 Identities=11% Similarity=0.058 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 440 FEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI-ED--PTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLA 516 (637)
Q Consensus 440 aElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~l-s~--pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~ 516 (637)
.+++.++.++..+.+.+..++..+..++..++.-.... .. +.++..+++..+..+...+-..+.++-.+......+.
T Consensus 777 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 856 (1047)
T PRK10246 777 ETLTQLEQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLAQQLRENTTRQGEIRQQLKQDA 856 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555554444443332211001 00 1223345566666666655555555555554444444
Q ss_pred HHHHH
Q 006637 517 FRIEA 521 (637)
Q Consensus 517 lQLER 521 (637)
-.+.+
T Consensus 857 ~~~~~ 861 (1047)
T PRK10246 857 DNRQQ 861 (1047)
T ss_pred HHHHH
Confidence 33333
No 111
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=87.38 E-value=48 Score=36.05 Aligned_cols=30 Identities=17% Similarity=0.366 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 491 LGQLTDHLIQKQAQVEALSSEKATLAFRIE 520 (637)
Q Consensus 491 L~qLTE~LIqKQTQLEsLsSEK~AL~lQLE 520 (637)
|-+|.-+++..|..+-.++.|+--|..+|.
T Consensus 236 It~LlsqivdlQ~r~k~~~~EnEeL~q~L~ 265 (306)
T PF04849_consen 236 ITSLLSQIVDLQQRCKQLAAENEELQQHLQ 265 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 333333344444444444444444443333
No 112
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=86.96 E-value=6.3 Score=42.10 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 493 QLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDE 528 (637)
Q Consensus 493 qLTE~LIqKQTQLEsLsSEK~AL~lQLERlerl~ee 528 (637)
..-...=..|-++-.+..|..++..|++.+....+.
T Consensus 96 ~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~ 131 (314)
T PF04111_consen 96 EYWREYNELQLELIEFQEERDSLKNQYEYASNQLDR 131 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444555556666666666666665543333
No 113
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=86.94 E-value=48 Score=40.08 Aligned_cols=64 Identities=17% Similarity=0.162 Sum_probs=44.3
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHH-HHHHHHHHHHHHHHH
Q 006637 435 SKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELK-RRLGQLTDHLIQKQA 503 (637)
Q Consensus 435 ~~~~EaElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE-~RL~qLTE~LIqKQT 503 (637)
....+.|..+++.|+...-.++..++-+|...+.|-+.|...+.+ -+-| .||+.||..|-.=++
T Consensus 489 kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQ-----rDaEi~RL~eLtR~LQ~Sma 553 (861)
T PF15254_consen 489 KQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQ-----RDAEIERLRELTRTLQNSMA 553 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 344455566678888888888888888888888877777776643 2333 688888888853333
No 114
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=86.63 E-value=41 Score=34.57 Aligned_cols=91 Identities=15% Similarity=0.140 Sum_probs=56.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 006637 332 KQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVA 411 (637)
Q Consensus 332 ~qQ~~easelq~~mlaS~aALelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e 411 (637)
|+|-+|+..=.+.=..-+-+|.-.+.--++.-..--.+...|......-...|-.|+..|+-..+.+..|++++..++.+
T Consensus 16 KqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~E 95 (202)
T PF06818_consen 16 KQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAE 95 (202)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHH
Confidence 66666665322222222233333322222222222233334444444455567788999999999999999999999999
Q ss_pred HHHHHHhhhhh
Q 006637 412 HEELSQRNSNT 422 (637)
Q Consensus 412 ~esLRqeL~~a 422 (637)
...|+..+...
T Consensus 96 l~~Lr~~l~~~ 106 (202)
T PF06818_consen 96 LAELREELACA 106 (202)
T ss_pred HHHHHHHHHhh
Confidence 99999998886
No 115
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=86.22 E-value=68 Score=38.73 Aligned_cols=24 Identities=38% Similarity=0.383 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 369 LLAKLETANADLARALAAAQKKLE 392 (637)
Q Consensus 369 REa~LE~enaeLAkALA~~QRkLe 392 (637)
++..++..|++|.+|.-..+-+.+
T Consensus 168 l~~~~qe~naeL~rarqreemnee 191 (916)
T KOG0249|consen 168 LEEQLEELNAELQRARQREKMNEE 191 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344455555555555444444433
No 116
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.17 E-value=78 Score=37.29 Aligned_cols=193 Identities=21% Similarity=0.244 Sum_probs=92.4
Q ss_pred HHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006637 316 LEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMET 395 (637)
Q Consensus 316 Le~Ek~~leklleEr~~qQ~~easelq~~mlaS~aALelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~ 395 (637)
|=.||..|++-++|.+- +-.-.++-|=-+.+||..=.-.|.-+-.....||..|-++-++-+.+.- +++-+..
T Consensus 41 lLeeK~~Lkqq~eElea----eyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl---~kI~ele 113 (772)
T KOG0999|consen 41 LLEEKEDLKQQLEELEA----EYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYL---QKILELE 113 (772)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHH---HHHHHHH
Confidence 44567776666655542 3334455556667777777777877777778888888777766554421 1111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHH--HhhchHHH-------HHHHHHHHHHHHHHHHHHHHHH---
Q 006637 396 NQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLA--ASKGVEFE-------REILEAEYTFIADKIIQLEDKA--- 463 (637)
Q Consensus 396 ~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~--a~~~~EaE-------lE~~e~Els~Le~el~~Le~kl--- 463 (637)
+..-.+++.+...+.+.+.+-....+.. ..++.. +-.....| -.++=+||+.|+.+-+.||.++
T Consensus 114 neLKq~r~el~~~q~E~erl~~~~sd~~----e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~L 189 (772)
T KOG0999|consen 114 NELKQLRQELTNVQEENERLEKVHSDLK----ESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNL 189 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh----hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 2222222222222222221111111111 001100 11111122 1235577888888766666554
Q ss_pred HHHHHHHHHHHHHhCCCch------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 006637 464 KKLEGNIEMTRKEIEDPTE------VEIELKRRLGQLTDHLIQKQAQVEALSSE---KATLAFRIEA 521 (637)
Q Consensus 464 qk~E~EIe~LR~~ls~pT~------~q~ELE~RL~qLTE~LIqKQTQLEsLsSE---K~AL~lQLER 521 (637)
+.-+.|.+-++..+..... .+.+=..||+...+.=+ -..||.|..| |++|...|+.
T Consensus 190 R~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQl--EEALeTlq~EReqk~alkkEL~q 254 (772)
T KOG0999|consen 190 RQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQL--EEALETLQQEREQKNALKKELSQ 254 (772)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHH
Confidence 3334445555555543222 12233355555555443 3456666655 4566655554
No 117
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=86.10 E-value=30 Score=32.40 Aligned_cols=45 Identities=24% Similarity=0.149 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 006637 372 KLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 416 (637)
Q Consensus 372 ~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLR 416 (637)
.+.......++....||.+.+.+...-++.-+.+..+..++..++
T Consensus 28 ~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~ 72 (132)
T PF07926_consen 28 SLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQ 72 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444333333333333333333333
No 118
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=85.98 E-value=1e+02 Score=38.47 Aligned_cols=99 Identities=21% Similarity=0.280 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHH
Q 006637 304 DAIKERENMVARLEGEKQSLEKILEER--AKQQVKEASELQTSMMETMDAFELEKQ-------RHNNTRMEALQLLAKLE 374 (637)
Q Consensus 304 ~~i~eRe~~va~Le~Ek~~leklleEr--~~qQ~~easelq~~mlaS~aALelEk~-------aHsaTR~qAlaREa~LE 374 (637)
.+..-++++.+.|..++-+|+..|.-. ++||. +.=++-|+..--+|+++-. .....|.-++.-..+++
T Consensus 258 ~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~---~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~ 334 (1200)
T KOG0964|consen 258 DALDKVEDESEDLKCEIKELENKLTNLREEKEQL---KARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVK 334 (1200)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHH
Confidence 455568888899999998888877322 24444 2223556665555544422 22223334444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 006637 375 TANADLARALAAAQKKLEMETNQVAELRQQT 405 (637)
Q Consensus 375 ~enaeLAkALA~~QRkLeee~~rvaELrqkv 405 (637)
..+.+-...|+...-+......+-.-+...+
T Consensus 335 ~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl 365 (1200)
T KOG0964|consen 335 DKIEEKKDELSKIEPKYNSLVDEEKRLKKRL 365 (1200)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhHHHHHHHHH
Confidence 5555444444444444444443333333333
No 119
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=85.66 E-value=29 Score=38.07 Aligned_cols=156 Identities=23% Similarity=0.315 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch-hHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Q 006637 448 EYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTE-VEIELKRRL-GQLTDHLIQKQAQVEALSSE-------KATLAFR 518 (637)
Q Consensus 448 Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~-~q~ELE~RL-~qLTE~LIqKQTQLEsLsSE-------K~AL~lQ 518 (637)
-+++.++++...+.++++....+-..|...-.+++ .+.++.-.| ..|-+-|+.+|++|..+.+- .-.|.-|
T Consensus 180 t~r~Ae~eV~~~eerv~kAs~~L~~yr~kngvfdp~~qaevq~~Lvs~Le~eL~~iqaqL~tvks~m~~~nPqi~~Lkar 259 (372)
T COG3524 180 TVRFAEEEVQKAEERVKKASNDLTDYRIKNGVFDPKAQAEVQMSLVSKLEDELIVIQAQLDTVKSVMNPENPQIPGLKAR 259 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHH
Confidence 35566667767777777777777777766655666 467777666 78999999999999998764 3678878
Q ss_pred HHHHHH-HHHhcCCCCCCC-CCCcccCccccCccCCCCchhHhhhc---ccchhhhhhhhhhHHHHHHHHHHh-------
Q 006637 519 IEAVSR-LLDENKPVTGSS-SRDLEFGAWDLSQSNLRPLFEEKIRS---GKKHIGSLLKQLDSIFLAGVVFLR------- 586 (637)
Q Consensus 519 LERler-l~ee~~s~s~ss-~~d~E~gs~~~~~srlrPlF~~~va~---g~R~v~sal~~LD~~~lrlgrfLr------- 586 (637)
.|-+++ +.++.+..++.+ ..++..-. --|.+.... ..++|..|+..|++.-+..-|-.+
T Consensus 260 ieSlrkql~qe~q~isag~~~~sl~~qa---------Aefq~l~lE~~fAekay~AAl~SlEsArieAdrqq~yL~iis~ 330 (372)
T COG3524 260 IESLRKQLLQEKQAISAGGSSQSLSNQA---------AEFQRLYLENTFAEKAYAAALTSLESARIEADRQQLYLEIISQ 330 (372)
T ss_pred HHHHHHHHHHHHHHhcCCCCccchhHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhheeeeecC
Confidence 888764 334444432211 11211100 013332211 347788888888887665544332
Q ss_pred -------hchhhHH--HHHHHHHHHHHHHHHHHHhc
Q 006637 587 -------RNPIAKL--WSLVYLVCLHLWVIYILLSH 613 (637)
Q Consensus 587 -------R~P~ARl--lfiiYlllLHLwVf~vL~~~ 613 (637)
.|| -|+ +|..++++|-+|=+.+|..+
T Consensus 331 P~~pdlA~yP-~RLyni~at~iill~~yGI~~ll~~ 365 (372)
T COG3524 331 PNLPDLAKYP-ERLYNILATFIILLIVYGIVVLLKA 365 (372)
T ss_pred CCchhhhhCh-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122 243 45556666666665555554
No 120
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=85.57 E-value=75 Score=36.57 Aligned_cols=118 Identities=19% Similarity=0.244 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006637 305 AIKERENMVARLEGEKQSLEKILEERA----KQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADL 380 (637)
Q Consensus 305 ~i~eRe~~va~Le~Ek~~leklleEr~----~qQ~~easelq~~mlaS~aALelEk~aHsaTR~qAlaREa~LE~enaeL 380 (637)
+=++-+..+.-|+....-||+=.+|.. +||+ .+.-..-|+.-...--.-+--...--..++..+..|
T Consensus 325 tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqv---------fvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnL 395 (527)
T PF15066_consen 325 TNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQV---------FVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNL 395 (527)
T ss_pred hhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhH---------HHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHH
Confidence 334556677788888888888776665 3333 333333332211111112222333345677788999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhcchhhHhH
Q 006637 381 ARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSN-THQTGIYLKR 431 (637)
Q Consensus 381 AkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~-a~Q~~~sa~Q 431 (637)
..+||..|++|++....-.-|.-+++.+.+.+-.|+.+-.. ++|+-.+++|
T Consensus 396 qe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsq 447 (527)
T PF15066_consen 396 QEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQ 447 (527)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999988876444 3444445554
No 121
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=85.47 E-value=39 Score=34.13 Aligned_cols=102 Identities=13% Similarity=0.190 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchh--hHhHHH-HhhchHHHHHHHHHHH
Q 006637 373 LETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGI--YLKRLA-ASKGVEFEREILEAEY 449 (637)
Q Consensus 373 LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~--sa~Ql~-a~~~~EaElE~~e~El 449 (637)
|..-..++...|..+++.+......-..++.++...+.....+..+-..+-+.+. -+.... .....+.....++.++
T Consensus 29 l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~ 108 (219)
T TIGR02977 29 IRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALEREL 108 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555666666666666666666666666666666666665555443331 111111 1111122223344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 450 TFIADKIIQLEDKAKKLEGNIEMTR 474 (637)
Q Consensus 450 s~Le~el~~Le~klqk~E~EIe~LR 474 (637)
..+...+..|+.++..++..|+.++
T Consensus 109 ~~~~~~v~~l~~~l~~L~~ki~~~k 133 (219)
T TIGR02977 109 AAVEETLAKLQEDIAKLQAKLAEAR 133 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555554444444
No 122
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=85.12 E-value=8.5 Score=38.00 Aligned_cols=12 Identities=25% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHH
Q 006637 311 NMVARLEGEKQS 322 (637)
Q Consensus 311 ~~va~Le~Ek~~ 322 (637)
..++.|+.|.+.
T Consensus 74 ~~~~~l~~ELae 85 (194)
T PF08614_consen 74 QKLAKLQEELAE 85 (194)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 445555555555
No 123
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=84.99 E-value=1.1e+02 Score=38.14 Aligned_cols=14 Identities=14% Similarity=0.259 Sum_probs=9.5
Q ss_pred cccCccccchhhcc
Q 006637 618 AEARSGAVFSLENI 631 (637)
Q Consensus 618 s~grsgA~~slen~ 631 (637)
+.+..|++|-+.-+
T Consensus 647 sVTl~GDV~dP~Gt 660 (1174)
T KOG0933|consen 647 SVTLEGDVYDPSGT 660 (1174)
T ss_pred eeeecCceeCCCCc
Confidence 47778888766543
No 124
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=84.25 E-value=95 Score=36.62 Aligned_cols=18 Identities=28% Similarity=0.206 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006637 506 EALSSEKATLAFRIEAVS 523 (637)
Q Consensus 506 EsLsSEK~AL~lQLERle 523 (637)
|....|.....-+||.+.
T Consensus 282 E~~~~ELq~~qe~Lea~~ 299 (617)
T PF15070_consen 282 EMAHQELQEAQEHLEALS 299 (617)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444555544
No 125
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=84.18 E-value=1.1e+02 Score=37.12 Aligned_cols=34 Identities=29% Similarity=0.300 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 484 EIELKRRLGQLTDHLIQKQAQVEALSSEKATLAF 517 (637)
Q Consensus 484 q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~l 517 (637)
..+|-.||..--.+|..=|-.+..-..|+.+|++
T Consensus 640 ~~eL~~ql~~a~~t~a~l~~~~~~~~gei~alrl 673 (828)
T PF04094_consen 640 EAELVSQLAAAQSTLADLQRLVQDQAGEIAALRL 673 (828)
T ss_pred chhHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHh
Confidence 5689999988888888888888888999999986
No 126
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=84.17 E-value=51 Score=33.41 Aligned_cols=121 Identities=21% Similarity=0.270 Sum_probs=74.2
Q ss_pred HHHHHHHH--HHHh-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--H
Q 006637 292 KILAEKAA--AKAG-DAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRME--A 366 (637)
Q Consensus 292 ~~~ae~~a--~kA~-~~i~eRe~~va~Le~Ek~~leklleEr~~qQ~~easelq~~mlaS~aALelEk~aHsaTR~q--A 366 (637)
..||+++. ++|. +++.=...||..|+.|..+.+..+.|-. ..|+++=-....+. ..+...+.+ .
T Consensus 45 ~~lA~kA~qaA~aAeAaL~GKq~iveqLe~ev~EAe~vV~ee~-------~sL~~aq~na~aA~----~aa~~A~~q~~~ 113 (188)
T PF05335_consen 45 NQLADKAAQAAKAAEAALAGKQQIVEQLEQEVREAEAVVQEEK-------ASLQQAQANAQAAQ----RAAQQAQQQLET 113 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 35788754 3333 6788899999999999999999984432 22333211111111 111111211 1
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006637 367 LQLL-AKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH 423 (637)
Q Consensus 367 laRE-a~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~ 423 (637)
+... ................+|+.|.+++..+...+..++.|...+...+.+++...
T Consensus 114 L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk 171 (188)
T PF05335_consen 114 LKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTK 171 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 22233334444556678888888888888888888888888888888776654
No 127
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=84.10 E-value=0.32 Score=56.46 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 006637 371 AKLETANADLARALAAAQKKLEMETNQVAELRQQT 405 (637)
Q Consensus 371 a~LE~enaeLAkALA~~QRkLeee~~rvaELrqkv 405 (637)
..|+.++-.+..++..+.-.++.....+..|++++
T Consensus 249 ~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~ 283 (713)
T PF05622_consen 249 RRLREELERLEEQRDDLKIELEELEKEIDELRQEN 283 (713)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443
No 128
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=84.10 E-value=14 Score=35.58 Aligned_cols=61 Identities=25% Similarity=0.460 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 445 LEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSS 510 (637)
Q Consensus 445 ~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsS 510 (637)
+..++..+..++..|....+.++.++..|.. .|| ..+|...+.+|...+-.-+..|+.|.+
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~---~~t--~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSS---EPT--NEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCC--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555545545555544444433 233 356766666666666555555555554
No 129
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=83.92 E-value=69 Score=38.68 Aligned_cols=59 Identities=19% Similarity=0.226 Sum_probs=52.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 006637 352 FELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEV 410 (637)
Q Consensus 352 LelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~ 410 (637)
++.=++-|.--||+|+.+-..|+.+...+.+-|+.++..-+-.......|+++++-|+.
T Consensus 200 vdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 200 VDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33556779999999999999999999999999999999988888888999999988884
No 130
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=83.91 E-value=98 Score=36.52 Aligned_cols=141 Identities=21% Similarity=0.236 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc-chhhHhHHHHhhchHHHHH
Q 006637 365 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQ-TGIYLKRLAASKGVEFERE 443 (637)
Q Consensus 365 qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q-~~~sa~Ql~a~~~~EaElE 443 (637)
+.+-+-++|-++|+++.-+|-..|....+...+..+|+.++..+...+..--+++...++ .-...+++.
T Consensus 171 Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lq---------- 240 (617)
T PF15070_consen 171 ELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQ---------- 240 (617)
T ss_pred HHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH----------
Confidence 344455666677777777777766666555555555555555444444433333333321 111112221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 444 ILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAV 522 (637)
Q Consensus 444 ~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERl 522 (637)
.-.+.|+.+..+...|..++-.-.+-|+.|+..-.... ..+|.-.+.| -+.|..||+++.++.-|.-+|--+
T Consensus 241 qy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~---~~~E~~~~EL----q~~qe~Lea~~qqNqqL~~qls~~ 312 (617)
T PF15070_consen 241 QYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGK---VQLEMAHQEL----QEAQEHLEALSQQNQQLQAQLSLM 312 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHH----HHHHHHHHHHHhhhHHHHHHHHhh
Confidence 11234445555555555554444444555554432221 2344444444 445999999999999999777654
No 131
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=83.84 E-value=1.1e+02 Score=36.99 Aligned_cols=35 Identities=14% Similarity=0.280 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 489 RRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVS 523 (637)
Q Consensus 489 ~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERle 523 (637)
+|+..+-+.+..=|..++.|..+.+.|...+-+..
T Consensus 725 nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k 759 (961)
T KOG4673|consen 725 NRAAENRQEYLAAQEEADTLEGRANQLEVEIRELK 759 (961)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555566666666666666665555443
No 132
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=83.68 E-value=43 Score=32.19 Aligned_cols=116 Identities=16% Similarity=0.201 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 303 GDAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLAR 382 (637)
Q Consensus 303 ~~~i~eRe~~va~Le~Ek~~leklleEr~~qQ~~easelq~~mlaS~aALelEk~aHsaTR~qAlaREa~LE~enaeLAk 382 (637)
-+-+++=++=...++.|..+|.+=+ .+--.+.+.+++.+-.+..+++.- ..|...-.++.-|...||.+.....+
T Consensus 20 e~~~K~le~~~~~~E~EI~sL~~K~----~~lE~eld~~~~~l~~~k~~lee~-~~~~~~~E~l~rriq~LEeele~ae~ 94 (143)
T PF12718_consen 20 EAKVKQLEQENEQKEQEITSLQKKN----QQLEEELDKLEEQLKEAKEKLEES-EKRKSNAEQLNRRIQLLEEELEEAEK 94 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhH-HHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 3556666666667777777755444 233346677777777777666543 22222334677788899999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006637 383 ALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH 423 (637)
Q Consensus 383 ALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~ 423 (637)
.|..+.-+|.+-...+..++.+|..|+...+.+-.++..+.
T Consensus 95 ~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~ 135 (143)
T PF12718_consen 95 KLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELE 135 (143)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999888887777765543
No 133
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=83.65 E-value=51 Score=33.05 Aligned_cols=109 Identities=19% Similarity=0.170 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----------------HHHHHHHHHhhhhhhcchhhHhHH
Q 006637 369 LLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELK----------------EVAHEELSQRNSNTHQTGIYLKRL 432 (637)
Q Consensus 369 REa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~L----------------E~e~esLRqeL~~a~Q~~~sa~Ql 432 (637)
|+...+++...+|-.+++.|.++.+-..+|++|++++..- ...+++.-.+|...+|+-+.+.++
T Consensus 3 rl~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qv 82 (182)
T PF15035_consen 3 RLDAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQV 82 (182)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHH
Confidence 3445567777888888999999999999999998887321 134555566666666776666666
Q ss_pred HHhhchHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 433 AASKGVEFER-----EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 477 (637)
Q Consensus 433 ~a~~~~EaEl-----E~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~l 477 (637)
......+.|- +.+..++..++..+..+...+...+.++..-...+
T Consensus 83 N~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~ 132 (182)
T PF15035_consen 83 NALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENF 132 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6544444442 12334444444444444444444444443333333
No 134
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=83.27 E-value=46 Score=32.22 Aligned_cols=67 Identities=21% Similarity=0.263 Sum_probs=44.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 352 FELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 418 (637)
Q Consensus 352 LelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqe 418 (637)
++.....+..-+.....|...+.....++.+-+...+..+.+....+..++..+..+......+.+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (191)
T PF04156_consen 114 LKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEK 180 (191)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444545667777777888888888888777777666666666666666666665555544444
No 135
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=83.20 E-value=0.36 Score=57.47 Aligned_cols=222 Identities=24% Similarity=0.284 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 006637 302 AGDAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLA 381 (637)
Q Consensus 302 A~~~i~eRe~~va~Le~Ek~~leklleEr~~qQ~~easelq~~mlaS~aALelEk~aHsaTR~qAlaREa~LE~enaeLA 381 (637)
+-.++..-++.+.||+-+.+.+-.-++.+-..-..|.++++-.....+..++.++-...-.|..++.=--+||....+|.
T Consensus 480 ~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe 559 (859)
T PF01576_consen 480 AEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKLESDLNELE 559 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666666666666654444444444444555555555544545444444444455555555566777777776
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcch-------hhH-hHHH-----------HhhchHHHH
Q 006637 382 RALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTG-------IYL-KRLA-----------ASKGVEFER 442 (637)
Q Consensus 382 kALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~-------~sa-~Ql~-----------a~~~~EaEl 442 (637)
-.|..+.+...+-...+.-+..++..++..++..++...++.... ..+ .++. +-+.+|.|+
T Consensus 560 ~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el 639 (859)
T PF01576_consen 560 IQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESEL 639 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666665555555555555555555555555444433332110 000 1111 112233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 443 EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEV-------EIELKRRLGQLTDHLIQKQAQVEALSSEKATL 515 (637)
Q Consensus 443 E~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~-------q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL 515 (637)
.-+..++..+......+....++++.+|..|...+..-... ..-.......|++.|.+-|.....+..++.+|
T Consensus 640 ~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~L 719 (859)
T PF01576_consen 640 DELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKAL 719 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233333333333344555667777777777777542211 12222455678888888898888899999999
Q ss_pred HHHHHHHH
Q 006637 516 AFRIEAVS 523 (637)
Q Consensus 516 ~lQLERle 523 (637)
+.|+--++
T Consensus 720 E~q~keLq 727 (859)
T PF01576_consen 720 ERQVKELQ 727 (859)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 88887776
No 136
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=83.03 E-value=51 Score=35.58 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=15.9
Q ss_pred HHhHHHHHHHHHHHHHHHhHHH
Q 006637 301 KAGDAIKERENMVARLEGEKQS 322 (637)
Q Consensus 301 kA~~~i~eRe~~va~Le~Ek~~ 322 (637)
+=-+-|.+...++..+|.+-..
T Consensus 74 EL~~~I~egr~~~~~~E~et~~ 95 (312)
T smart00787 74 ELKKYISEGRDLFKEIEEETLI 95 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3336688888888888887653
No 137
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=82.84 E-value=1.3e+02 Score=37.11 Aligned_cols=153 Identities=22% Similarity=0.179 Sum_probs=81.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 311 NMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKK 390 (637)
Q Consensus 311 ~~va~Le~Ek~~leklleEr~~qQ~~easelq~~mlaS~aALelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRk 390 (637)
+-+-+++||.-.+|-|+ |-.-+-..|-.+|-++.--+-.| --.+...-++.|+..|++-.+|+..-.-.
T Consensus 887 nkihK~egEltcaE~i~-----q~kdee~altdhekeasicl~ee------KDqei~EleailekQNca~eeakqn~eis 955 (1424)
T KOG4572|consen 887 NKIHKKEGELTCAECIK-----QMKDEEEALTDHEKEASICLIEE------KDQEIEELEAILEKQNCAHEEAKQNDEIS 955 (1424)
T ss_pred hHHHHhhhhhHHHHHHH-----HcchHHHHHHHHHHHHHHHHHhh------hhHHHHHHHHHHHhhhhhHHHHhhcCccc
Confidence 44556667766666666 22222222333333332222222 22456667888999999999998887777
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhH---HH-HhhchHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 006637 391 LEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKR---LA-ASKGVEFEREILEAEYTFIADKIIQLEDKA-KK 465 (637)
Q Consensus 391 Leee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Q---l~-a~~~~EaElE~~e~Els~Le~el~~Le~kl-qk 465 (637)
++++...-++.+.+++.+-.+..++-|.--.+..--..+.+ +. ..+..-.|+|.++.|+..+..+++.++..+ +.
T Consensus 956 ~Ed~kkLhaE~daeLe~~~ael~eleqk~le~~eDea~aRh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQe 1035 (1424)
T KOG4572|consen 956 EEDKKKLHAEIDAELEKEFAELIELEQKALECKEDEAFARHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQE 1035 (1424)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77777777777777666655555555543222111011111 00 111111334556677777777776666554 33
Q ss_pred HHHHHHHHH
Q 006637 466 LEGNIEMTR 474 (637)
Q Consensus 466 ~E~EIe~LR 474 (637)
.+.++....
T Consensus 1036 kE~el~e~e 1044 (1424)
T KOG4572|consen 1036 KEGELIEDE 1044 (1424)
T ss_pred ccchHHHHH
Confidence 344444333
No 138
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=82.73 E-value=1.4e+02 Score=37.78 Aligned_cols=157 Identities=22% Similarity=0.238 Sum_probs=78.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----H--HHHHHHHHhhhhhhcc
Q 006637 352 FELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELK----E--VAHEELSQRNSNTHQT 425 (637)
Q Consensus 352 LelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~L----E--~e~esLRqeL~~a~Q~ 425 (637)
+..+-.++.-..|.+..+..+=... |. +|+.||+.|+-+.---+ -+-+..+ | .=-.+||.+++.+.|.
T Consensus 1005 FNs~EA~~AK~QMDaIKqmIekKv~---L~-~L~qCqdALeKqnIa~A--L~ALn~IPSdKEms~Is~eLReQIq~~KQ~ 1078 (1439)
T PF12252_consen 1005 FNSEEARQAKAQMDAIKQMIEKKVV---LQ-ALTQCQDALEKQNIAGA--LQALNNIPSDKEMSKISSELREQIQSVKQD 1078 (1439)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHhhhHHHH--HHHHhcCCchhhhhhhhHHHHHHHHHHHHH
Confidence 4445555666667776665543332 22 99999999986552111 1111100 0 0112334444444444
Q ss_pred hhhHhHHH---HhhchHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhCC-----Cch-
Q 006637 426 GIYLKRLA---ASKGVEFEREILEAEYTFIADKIIQLE--------------DKAKKLEGNIEMTRKEIED-----PTE- 482 (637)
Q Consensus 426 ~~sa~Ql~---a~~~~EaElE~~e~Els~Le~el~~Le--------------~klqk~E~EIe~LR~~ls~-----pT~- 482 (637)
.+++-... .-...+..+.+-+.=+..++.+|..|+ .-+..+++||..||++--. -+.
T Consensus 1079 LesLQRAV~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ia~lnnlqqElklLRnEK~Rmh~~~dkVD 1158 (1439)
T PF12252_consen 1079 LESLQRAVVTPVVTDAEKVRVRYETLITDITKRITDLEKAKLDNLDSIKKAIANLNNLQQELKLLRNEKIRMHSGTDKVD 1158 (1439)
T ss_pred HHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCccc
Confidence 33321111 112222333333333334444444443 1145677777777765421 111
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 483 --VEIELKRRLGQLTDHLIQKQAQVEALSSEKATLA 516 (637)
Q Consensus 483 --~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~ 516 (637)
+.-.||+||+.+...|+ -+-|..++-+.++|+
T Consensus 1159 FSDIEkLE~qLq~~~~kL~--dAyl~eitKqIsaLe 1192 (1439)
T PF12252_consen 1159 FSDIEKLEKQLQVIHTKLY--DAYLVEITKQISALE 1192 (1439)
T ss_pred HHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHHH
Confidence 34678999998888887 455555666666665
No 139
>PRK10884 SH3 domain-containing protein; Provisional
Probab=82.69 E-value=21 Score=36.36 Aligned_cols=29 Identities=31% Similarity=0.390 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 006637 373 LETANADLARALAAAQKKLEMETNQVAEL 401 (637)
Q Consensus 373 LE~enaeLAkALA~~QRkLeee~~rvaEL 401 (637)
|+++|..|.+.|+.++.+++....+.+.+
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666555555444444433333333
No 140
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=81.88 E-value=64 Score=32.92 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 364 MEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 418 (637)
Q Consensus 364 ~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqe 418 (637)
....-|....+.....+...|..+...+++...+..+...++..++..++..-.+
T Consensus 81 k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR 135 (237)
T PF00261_consen 81 KVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEER 135 (237)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444444444433333
No 141
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=81.77 E-value=36 Score=39.32 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 485 IELKRRLGQLTDHLIQKQAQVEALSSEKATLA 516 (637)
Q Consensus 485 ~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~ 516 (637)
.-.|.+|..|||+|+.=..+|..-.-|+.+|.
T Consensus 483 ~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 483 RNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788999999999876666666666665554
No 142
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=81.67 E-value=53 Score=32.50 Aligned_cols=113 Identities=18% Similarity=0.189 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhh-----HhHHH-HhhchHHHHHHHHHHHHHHHHHHH
Q 006637 384 LAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIY-----LKRLA-ASKGVEFEREILEAEYTFIADKII 457 (637)
Q Consensus 384 LA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~s-----a~Ql~-a~~~~EaElE~~e~Els~Le~el~ 457 (637)
....++.|++-..++.+.=.+|..|+..+...|++|......-.. ...+. .+...+..+.+.+++-..|..+--
T Consensus 29 ~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD 108 (159)
T PF05384_consen 29 YERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERRD 108 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777777778888888888888887766422211 11111 233344444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Q 006637 458 QLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTD 496 (637)
Q Consensus 458 ~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE 496 (637)
.|+-.++.++.-|+++.+-+++-+.+..=|-..|..+++
T Consensus 109 ~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~ 147 (159)
T PF05384_consen 109 ELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSE 147 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 555555555555555555554444333333444444433
No 143
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=81.23 E-value=82 Score=33.71 Aligned_cols=32 Identities=22% Similarity=0.382 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 493 QLTDHLIQKQAQVEALSSEKATLAFRIEAVSR 524 (637)
Q Consensus 493 qLTE~LIqKQTQLEsLsSEK~AL~lQLERler 524 (637)
.|...|-.++..++.+..++..+.-++..+++
T Consensus 234 el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~ 265 (325)
T PF08317_consen 234 ELQEELEELEEKIEELEEQKQELLAEIAEAEK 265 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444433
No 144
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=80.92 E-value=1.2e+02 Score=36.02 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=12.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 391 LEMETNQVAELRQQTELKEVAHEELSQR 418 (637)
Q Consensus 391 Leee~~rvaELrqkve~LE~e~esLRqe 418 (637)
++.-..++.++++++...|..+++.+++
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l~~fr~~ 296 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKLNVYRQQ 296 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 145
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=80.89 E-value=97 Score=34.35 Aligned_cols=38 Identities=16% Similarity=0.342 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 486 ELKRRLGQLTDHLI-QKQAQVEALSSEKATLAFRIEAVS 523 (637)
Q Consensus 486 ELE~RL~qLTE~LI-qKQTQLEsLsSEK~AL~lQLERle 523 (637)
+.+.|+.+|-...+ .=+.+++.+..+...++.+|+.++
T Consensus 273 ~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~ 311 (457)
T TIGR01000 273 SQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLK 311 (457)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666655554433 456677777777777777777665
No 146
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=80.80 E-value=36 Score=33.08 Aligned_cols=32 Identities=25% Similarity=0.294 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 492 GQLTDHLIQKQAQVEALSSEKATLAFRIEAVS 523 (637)
Q Consensus 492 ~qLTE~LIqKQTQLEsLsSEK~AL~lQLERle 523 (637)
..|+..|=.||.++..|.+-+..+..-|+.++
T Consensus 83 ~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E 114 (140)
T PF10473_consen 83 ENLDKELQKKQEKVSELESLNSSLENLLQEKE 114 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 35666666777777777766666665555544
No 147
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=80.76 E-value=91 Score=33.98 Aligned_cols=65 Identities=20% Similarity=0.311 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 444 ILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEV-------EIELKRRLGQLTDHLIQKQAQVEAL 508 (637)
Q Consensus 444 ~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~-------q~ELE~RL~qLTE~LIqKQTQLEsL 508 (637)
++..|+..|..+|..|+.+++..-.|.+.|...+...-.. ..+|..|+......|..=|.+|-.+
T Consensus 231 rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~l 302 (306)
T PF04849_consen 231 RQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTL 302 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566777777777777777777777777777666432222 2444455555555555555554443
No 148
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=80.57 E-value=68 Score=32.41 Aligned_cols=19 Identities=42% Similarity=0.608 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006637 486 ELKRRLGQLTDHLIQKQAQ 504 (637)
Q Consensus 486 ELE~RL~qLTE~LIqKQTQ 504 (637)
+.+.++..+...|..++.+
T Consensus 130 ~~~~~l~~l~~~l~~~r~~ 148 (302)
T PF10186_consen 130 ERKQRLSQLQSQLARRRRQ 148 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555544444
No 149
>PF13514 AAA_27: AAA domain
Probab=80.41 E-value=1.6e+02 Score=36.56 Aligned_cols=29 Identities=17% Similarity=0.105 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 359 HNNTRMEALQLLAKLETANADLARALAAA 387 (637)
Q Consensus 359 HsaTR~qAlaREa~LE~enaeLAkALA~~ 387 (637)
+.........|...++.....+...+...
T Consensus 741 ~~~~~~~~~~ri~~~~~~~~~f~~~~~~L 769 (1111)
T PF13514_consen 741 ALAEIRELRRRIEQMEADLAAFEEQVAAL 769 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555554444433
No 150
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=80.12 E-value=1.5e+02 Score=35.90 Aligned_cols=75 Identities=23% Similarity=0.387 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCCCch------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 006637 445 LEAEYTFIADKIIQLEDKA---KKLEGNIEMTRKEIEDPTE------VEIELKRRLGQLTDHLIQKQAQVEALSSEK--- 512 (637)
Q Consensus 445 ~e~Els~Le~el~~Le~kl---qk~E~EIe~LR~~ls~pT~------~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK--- 512 (637)
+=++|+.|+++-..||.++ +.-+.|.+-++.++..-.. .+.|=-.||+.+++.=+ -..||+|-.|+
T Consensus 95 ll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~ql--eEALesl~~EReqk 172 (717)
T PF09730_consen 95 LLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQL--EEALESLKSEREQK 172 (717)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 4467777777777777664 3444555555555544322 12333456666666555 56677777664
Q ss_pred HHHHHHHHH
Q 006637 513 ATLAFRIEA 521 (637)
Q Consensus 513 ~AL~lQLER 521 (637)
++|+..|..
T Consensus 173 ~~LrkEL~~ 181 (717)
T PF09730_consen 173 NALRKELDQ 181 (717)
T ss_pred HHHHHHHHH
Confidence 555555544
No 151
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=79.85 E-value=0.57 Score=55.91 Aligned_cols=53 Identities=30% Similarity=0.438 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 455 KIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEA 507 (637)
Q Consensus 455 el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEs 507 (637)
....|+.+++.++.+++.++.++......-.+|+..|..+...|-.=++.+|.
T Consensus 258 ~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~ 310 (859)
T PF01576_consen 258 AKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEE 310 (859)
T ss_dssp -----------------------------------------------------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34578888999999999999999876666678888887777777655555554
No 152
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=79.80 E-value=55 Score=30.82 Aligned_cols=61 Identities=20% Similarity=0.181 Sum_probs=24.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 358 RHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 418 (637)
Q Consensus 358 aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqe 418 (637)
+.-+.+++.+.|++.|+.....+--+.......-++..+.+..|+++.......+.+|+.+
T Consensus 6 ~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqak 66 (107)
T PF09304_consen 6 ALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAK 66 (107)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555554444443333443344444444443333333333333
No 153
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=79.75 E-value=0.57 Score=54.43 Aligned_cols=32 Identities=25% Similarity=0.325 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 488 KRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVS 523 (637)
Q Consensus 488 E~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERle 523 (637)
+...+.|...| ..+|.+..+.+.++++.++++
T Consensus 287 eEe~~sLq~kl----~~~E~~~~el~~lq~e~~~Le 318 (722)
T PF05557_consen 287 EEEKRSLQRKL----ERLEELEEELAELQLENEKLE 318 (722)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 44444444333 356677777777777777765
No 154
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=79.28 E-value=3.6 Score=40.46 Aligned_cols=80 Identities=20% Similarity=0.153 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006637 341 LQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNS 420 (637)
Q Consensus 341 lq~~mlaS~aALelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~ 420 (637)
|+.+--.++.++...+..=.+.|....+-...|..+|+-|--.++.++..++.-...++.|...+..|+.-+.-.+.++.
T Consensus 2 L~~~~aq~~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~Lqfl~~~~r~d~~ 81 (181)
T PF09311_consen 2 LGLGEAQVMRALQQHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVKHLQFLVSIKREDLI 81 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHT----------------------------------------------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHHHHHHHhcccccc
Confidence 44445555666666666666677777777888999999999999999999999999999999999888877665555533
No 155
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=78.93 E-value=15 Score=38.67 Aligned_cols=41 Identities=29% Similarity=0.319 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 378 ADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 418 (637)
Q Consensus 378 aeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqe 418 (637)
.++-+-+..|.-++++.+.+-.+|...++.|+.++++++.+
T Consensus 131 ~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~er 171 (290)
T COG4026 131 MDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQER 171 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666666666666666666666666555
No 156
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=78.49 E-value=2.4e+02 Score=37.49 Aligned_cols=154 Identities=19% Similarity=0.239 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHH---Hh-----hchH-
Q 006637 369 LLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLA---AS-----KGVE- 439 (637)
Q Consensus 369 REa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~---a~-----~~~E- 439 (637)
-.+.=+..+..+...|..|..++.....++.-|+++-.++-.....|.+++..+++...++..+. +. -..+
T Consensus 718 ~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~ 797 (1822)
T KOG4674|consen 718 TISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEM 797 (1822)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555566666666666666666666666666666666666666654433332111 00 0011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 440 FEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED----PTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATL 515 (637)
Q Consensus 440 aElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~----pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL 515 (637)
+.+..|++.+..|.+.++.|..+++....++..+...++. +..--.++..-+..+...|--+++.++.|..+.+.|
T Consensus 798 ~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL 877 (1822)
T KOG4674|consen 798 ATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSEL 877 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123356666666666666666555555555555544432 111124445555555555555666666666666666
Q ss_pred HHHHHHH
Q 006637 516 AFRIEAV 522 (637)
Q Consensus 516 ~lQLERl 522 (637)
.-+|+-+
T Consensus 878 ~k~l~~~ 884 (1822)
T KOG4674|consen 878 EKRLKSA 884 (1822)
T ss_pred HHHHHHh
Confidence 6555544
No 157
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=77.88 E-value=1.5e+02 Score=34.87 Aligned_cols=38 Identities=24% Similarity=0.010 Sum_probs=20.5
Q ss_pred hhhhhHHHHHHHHHHh-----hchhhHHHHHHHHHHHHHHHHH
Q 006637 571 LKQLDSIFLAGVVFLR-----RNPIAKLWSLVYLVCLHLWVIY 608 (637)
Q Consensus 571 l~~LD~~~lrlgrfLr-----R~P~ARllfiiYlllLHLwVf~ 608 (637)
...++++=+.+-+++- |+.++--+|.+|=.++|+-+.+
T Consensus 516 ~~~v~s~e~el~~~~~~~~eer~ki~~ql~~~i~~i~~~k~~i 558 (581)
T KOG0995|consen 516 EELVKSIELELDRMVATGEEERQKIAKQLFAVIDQISDFKVSI 558 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555444444432 4555556666666666665543
No 158
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=77.84 E-value=1.1e+02 Score=33.15 Aligned_cols=10 Identities=20% Similarity=0.023 Sum_probs=4.4
Q ss_pred HHHHHHHHHh
Q 006637 294 LAEKAAAKAG 303 (637)
Q Consensus 294 ~ae~~a~kA~ 303 (637)
+++-++|-+.
T Consensus 51 l~~~v~A~~~ 60 (312)
T smart00787 51 LDQYVVAGYC 60 (312)
T ss_pred HHHHHHHhcC
Confidence 4444444443
No 159
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=77.79 E-value=1.1e+02 Score=33.21 Aligned_cols=17 Identities=6% Similarity=0.073 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHH
Q 006637 483 VEIELKRRLGQLTDHLI 499 (637)
Q Consensus 483 ~q~ELE~RL~qLTE~LI 499 (637)
.+.-...++..|-+..-
T Consensus 156 ~q~~~~sk~e~L~ekyn 172 (307)
T PF10481_consen 156 SQYYSDSKYEELQEKYN 172 (307)
T ss_pred hhhhhhhhHHHHHHHHH
Confidence 44555677777766544
No 160
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=77.63 E-value=56 Score=33.49 Aligned_cols=58 Identities=22% Similarity=0.373 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 452 IADKIIQLEDKAKKLEGNIEMTRKEIEDPTE--VEIELKRRLGQLTDHLIQKQAQVEALSSEKATLA 516 (637)
Q Consensus 452 Le~el~~Le~klqk~E~EIe~LR~~ls~pT~--~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~ 516 (637)
++.+...++.+++.++.+.++|+.-++.... .-.++|.+|. +=|.+||.+...+..|.
T Consensus 130 vT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~-------~v~~eIe~~~~~~~~l~ 189 (262)
T PF14257_consen 130 VTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELS-------RVRSEIEQLEGQLKYLD 189 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 4455566777788888888888888875432 2356666654 34778888887777777
No 161
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.28 E-value=1.6e+02 Score=34.83 Aligned_cols=135 Identities=12% Similarity=0.115 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhH----------
Q 006637 360 NNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYL---------- 429 (637)
Q Consensus 360 saTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa---------- 429 (637)
..-|++-..|..... +++.+.+-..+++.+++..++++++++.+.++....-|-.+.+++..+-+.+
T Consensus 569 ~vfrEqYi~~~dlV~---~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~ 645 (741)
T KOG4460|consen 569 QVFREQYILKQDLVK---EEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHS 645 (741)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 334444444444433 2345556667777777777777777777776666666666666653222211
Q ss_pred ------hHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHH
Q 006637 430 ------KRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLI 499 (637)
Q Consensus 430 ------~Ql~a~~~~EaElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LI 499 (637)
+-.++.+....|+..+-.+++.|..-|.++..+..+-+.-|...-.++..++-... +.+-+++++.|.
T Consensus 646 ~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~--~~Q~~~iqsiL~ 719 (741)
T KOG4460|consen 646 FHSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYILS--AYQRKCIQSILK 719 (741)
T ss_pred ccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccc--HHHHHHHHHHHH
Confidence 11234455555555555666666666777777666666666666666655543222 556666666664
No 162
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=77.06 E-value=96 Score=32.15 Aligned_cols=84 Identities=23% Similarity=0.224 Sum_probs=53.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 006637 332 KQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVA 411 (637)
Q Consensus 332 ~qQ~~easelq~~mlaS~aALelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e 411 (637)
.+....+..++.....++.+-...+- .+|+.|...|+.....+...+....-.++.....+..|+.++..++..
T Consensus 62 ~~~~~~~~k~e~~A~~Al~~g~E~LA------r~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~ 135 (225)
T COG1842 62 EEAQARAEKLEEKAELALQAGNEDLA------REALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAK 135 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666655544333322 246677777777777777777777777777777777777777777666
Q ss_pred HHHHHHhhhh
Q 006637 412 HEELSQRNSN 421 (637)
Q Consensus 412 ~esLRqeL~~ 421 (637)
...+..+...
T Consensus 136 ~~~l~ar~~~ 145 (225)
T COG1842 136 KEALKARKAA 145 (225)
T ss_pred HHHHHHHHHH
Confidence 6666665433
No 163
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=76.09 E-value=38 Score=39.90 Aligned_cols=89 Identities=13% Similarity=0.138 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHHHhhchHHHHHHHHHHHHHHHHH
Q 006637 376 ANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADK 455 (637)
Q Consensus 376 enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~a~~~~EaElE~~e~Els~Le~e 455 (637)
+...+.+-+..|...++....++.+|+..++.|+.+...|+.++..+..+ +..+ .....|++.+..+
T Consensus 416 ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~------------~~~~-~~~~rei~~~~~~ 482 (652)
T COG2433 416 EITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRRE------------VRDK-VRKDREIRARDRR 482 (652)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHH-HhhhHHHHHHHHH
Confidence 34455555555555555555555555555555554444444443333111 0000 1134455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 006637 456 IIQLEDKAKKLEGNIEMTRKEI 477 (637)
Q Consensus 456 l~~Le~klqk~E~EIe~LR~~l 477 (637)
|..|+.+|+.-...+++|++.+
T Consensus 483 I~~L~~~L~e~~~~ve~L~~~l 504 (652)
T COG2433 483 IERLEKELEEKKKRVEELERKL 504 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555554444444433
No 164
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=75.99 E-value=93 Score=31.44 Aligned_cols=108 Identities=19% Similarity=0.156 Sum_probs=52.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhH----HHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 393 METNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKR----LAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEG 468 (637)
Q Consensus 393 ee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Q----l~a~~~~EaElE~~e~Els~Le~el~~Le~klqk~E~ 468 (637)
.-..++..+..++..++.+++.|.++.....+....+.. .+..-+ ....-.--.|+.++..|...+-..+.
T Consensus 90 ~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evq-----Qk~~~kn~lLEkKl~~l~~~lE~kea 164 (201)
T PF13851_consen 90 NLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQ-----QKTGLKNLLLEKKLQALSEQLEKKEA 164 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666665555433322211 000000 00011112355666666666667776
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 469 NIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEAL 508 (637)
Q Consensus 469 EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsL 508 (637)
++..+-.+.. +.|. .+..=-..|-+.|-.|.+.|..|
T Consensus 165 qL~evl~~~n-ldp~--~~~~v~~~l~~~l~~KN~~I~~L 201 (201)
T PF13851_consen 165 QLNEVLAAAN-LDPA--ALSQVSKKLEDVLDSKNQTIKDL 201 (201)
T ss_pred HHHHHHHHcC-CCHH--HHHHHHHHHHHHHHHHHHHHhhC
Confidence 6666555543 2221 22222345556666777766543
No 165
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=75.80 E-value=73 Score=30.15 Aligned_cols=31 Identities=32% Similarity=0.411 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 485 IELKRRLGQLTDHLIQKQAQVEALSSEKATL 515 (637)
Q Consensus 485 ~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL 515 (637)
.+|+.|+..+-+.|=+|=.++|.|..+..-+
T Consensus 78 ~~l~~ry~t~LellGEK~E~veEL~~Dv~Dl 108 (120)
T PF12325_consen 78 EELQQRYQTLLELLGEKSEEVEELRADVQDL 108 (120)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 4666666666666666666666665554443
No 166
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=75.56 E-value=74 Score=30.05 Aligned_cols=19 Identities=21% Similarity=0.231 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 006637 438 VEFEREILEAEYTFIADKI 456 (637)
Q Consensus 438 ~EaElE~~e~Els~Le~el 456 (637)
++.|+-+.+.|+..|+..+
T Consensus 131 ~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 131 YEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344434445555554443
No 167
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=75.53 E-value=1.7e+02 Score=34.37 Aligned_cols=31 Identities=26% Similarity=0.246 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 006637 382 RALAAAQKKLEMETNQVAELRQQTELKEVAH 412 (637)
Q Consensus 382 kALA~~QRkLeee~~rvaELrqkve~LE~e~ 412 (637)
+.|+..|.-++....++..|.++++.-...+
T Consensus 394 ~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL 424 (594)
T PF05667_consen 394 ENIAKLQALVEASEQRLVELAQQWEKHRAPL 424 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3445555555555555556655554433333
No 168
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=74.80 E-value=1.3e+02 Score=34.43 Aligned_cols=58 Identities=21% Similarity=0.224 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006637 365 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT 422 (637)
Q Consensus 365 qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a 422 (637)
+--+|.++|.++.++.+++-++.--.+....+....++.++..+|.++..|+.+....
T Consensus 10 ~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l 67 (459)
T KOG0288|consen 10 ENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQL 67 (459)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888888777777777777777788888888888888888775544
No 169
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=74.76 E-value=36 Score=37.07 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006637 380 LARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNS 420 (637)
Q Consensus 380 LAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~ 420 (637)
+.+-|..||...+.=..-+..|+.....++..+.++.+...
T Consensus 14 L~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~ 54 (319)
T PF09789_consen 14 LSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAA 54 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 45677778888777777777887777777777776665533
No 170
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=74.16 E-value=1.7e+02 Score=33.47 Aligned_cols=63 Identities=17% Similarity=0.208 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----Cch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 447 AEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED-----PTE-----VEIELKRRLGQLTDHLIQKQAQVEALSSEKATLA 516 (637)
Q Consensus 447 ~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~-----pT~-----~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~ 516 (637)
+|+-.|.+++.. .+-.||.+||--+.. -++ +.-||| -.|--|-..|-=|-.|...|.
T Consensus 466 QELnaHNQELnn------RLaaEItrLRtlltgdGgGtGsplaqgkdayELE-------VLLRVKEsEiQYLKqEissLk 532 (593)
T KOG4807|consen 466 QELNAHNQELNN------RLAAEITRLRTLLTGDGGGTGSPLAQGKDAYELE-------VLLRVKESEIQYLKQEISSLK 532 (593)
T ss_pred HHHHHHHHHHhh------HHHHHHHHHHHHhccCCCCCCCccccCcchhhHH-------HHHHhhHHHHHHHHHHHHHHH
Confidence 555566666643 677899999988753 111 123443 344456677777777888887
Q ss_pred HHHHHH
Q 006637 517 FRIEAV 522 (637)
Q Consensus 517 lQLERl 522 (637)
-.|.-+
T Consensus 533 DELQta 538 (593)
T KOG4807|consen 533 DELQTA 538 (593)
T ss_pred HHHHHH
Confidence 666555
No 171
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=73.90 E-value=55 Score=33.50 Aligned_cols=85 Identities=21% Similarity=0.340 Sum_probs=58.7
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 432 LAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSE 511 (637)
Q Consensus 432 l~a~~~~EaElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSE 511 (637)
...+.++|.-+-.++.+..+++..|+.-+.++..++.+|+..+.+-. ..+..--+-+.++-.|..|
T Consensus 97 t~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~--------------~va~~Q~q~r~ea~aL~~e 162 (192)
T PF11180_consen 97 TARLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQ--------------QVAARQQQARQEAQALEAE 162 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 33455555555557788888888888888888999988888876652 2233333446677788888
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 006637 512 KATLAFRIEAVSRLLDENK 530 (637)
Q Consensus 512 K~AL~lQLERlerl~ee~~ 530 (637)
+.+.+.||..+++.-+.++
T Consensus 163 ~~aaqaQL~~lQ~qv~~Lq 181 (192)
T PF11180_consen 163 RRAAQAQLRQLQRQVRQLQ 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888876544443
No 172
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=73.30 E-value=77 Score=34.35 Aligned_cols=72 Identities=17% Similarity=0.228 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 446 EAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSR 524 (637)
Q Consensus 446 e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERler 524 (637)
+.|+..|+.+.+.|-.....++.--+++-..+-.. |.++.-|--+|-.=-.+||.|..|..-+.-.|||.+.
T Consensus 59 k~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~K-------e~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~ 130 (307)
T PF10481_consen 59 KNEYSALKRENQSLMESCENLEKTRQKLSHDLQVK-------ESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQ 130 (307)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666665554444444443333333333222 2233333333333344889999999999988888753
No 173
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=72.63 E-value=1.2e+02 Score=32.86 Aligned_cols=46 Identities=11% Similarity=0.247 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006637 376 ANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSN 421 (637)
Q Consensus 376 enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~ 421 (637)
....+...++.+...|.+....+++|+.++..++..+..+.+.+.+
T Consensus 68 s~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~ 113 (301)
T PF06120_consen 68 SSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAE 113 (301)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5566777777777788888888888888887777777766665544
No 174
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=72.37 E-value=1.3e+02 Score=31.39 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006637 398 VAELRQQTELKEVAHEELSQRNSNTH 423 (637)
Q Consensus 398 vaELrqkve~LE~e~esLRqeL~~a~ 423 (637)
+.+|+.++..++.-...+..++....
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~e 28 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESLE 28 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666655555555544443
No 175
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=71.20 E-value=58 Score=36.66 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=31.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 006637 333 QQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETAN 377 (637)
Q Consensus 333 qQ~~easelq~~mlaS~aALelEk~aHsaTR~qAlaREa~LE~en 377 (637)
+=++|-++||-+=++...+|..-+.+--..--+|++|+++|+++-
T Consensus 296 ~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec 340 (442)
T PF06637_consen 296 RVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAEC 340 (442)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666667766666666665555555556678999999988764
No 176
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=70.84 E-value=2.9e+02 Score=34.80 Aligned_cols=171 Identities=19% Similarity=0.219 Sum_probs=82.2
Q ss_pred HHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006637 345 MMETMDAFELE-KQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH 423 (637)
Q Consensus 345 mlaS~aALelE-k~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~ 423 (637)
.++|.-|+-.+ +--|.---+ +|...--.|...++.++..|.-..+++..|+..|+..-... ..+-.+..+.
T Consensus 164 L~eTekAig~~~ll~~h~eL~-------~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~-~~~~~Ie~l~ 235 (1072)
T KOG0979|consen 164 LVETEKAIGAEELLQYHIELM-------DLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERE-RKKSKIELLE 235 (1072)
T ss_pred HHHHHHhcCchhhHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 45666665444 444433333 34444444455555555555555555555555543322111 1111222222
Q ss_pred cchh---hHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhH-------HHHHHHHHH
Q 006637 424 QTGI---YLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVE-------IELKRRLGQ 493 (637)
Q Consensus 424 Q~~~---sa~Ql~a~~~~EaElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~q-------~ELE~RL~q 493 (637)
+... .-+.-..-.....+..+.+.+++.+...+.-+.++...++.++..++..++..+..- .+.=..+..
T Consensus 236 ~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~ 315 (1072)
T KOG0979|consen 236 KKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKE 315 (1072)
T ss_pred HhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 111111111222233445566666666665555665666666666666555433211 222233445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 494 LTDHLIQKQAQVEALSSEKATLAFRIEAVS 523 (637)
Q Consensus 494 LTE~LIqKQTQLEsLsSEK~AL~lQLERle 523 (637)
.-+.++.|+.++|.+.....-.+-++++..
T Consensus 316 ~~~~v~~~~~~le~lk~~~~~rq~~i~~~~ 345 (1072)
T KOG0979|consen 316 IEDEVEEKKNKLESLKKAAEKRQKRIEKAK 345 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677778888888777777776666654
No 177
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=70.50 E-value=2e+02 Score=32.81 Aligned_cols=82 Identities=17% Similarity=0.100 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcch---hhHhH----HHHhhchHHHHHHHHHHHHHHHH-------HHHHHHHH
Q 006637 397 QVAELRQQTELKEVAHEELSQRNSNTHQTG---IYLKR----LAASKGVEFEREILEAEYTFIAD-------KIIQLEDK 462 (637)
Q Consensus 397 rvaELrqkve~LE~e~esLRqeL~~a~Q~~---~sa~Q----l~a~~~~EaElE~~e~Els~Le~-------el~~Le~k 462 (637)
.+...+.+++..+..+...++.|..++.+. .+..+ +.--...+.++-..+.++..|.. .|..|+.+
T Consensus 243 ~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~r 322 (434)
T PRK15178 243 RILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAK 322 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHH
Confidence 344555555555555555566555554221 22222 11223334444444555554433 23456666
Q ss_pred HHHHHHHHHHHHHHhC
Q 006637 463 AKKLEGNIEMTRKEIE 478 (637)
Q Consensus 463 lqk~E~EIe~LR~~ls 478 (637)
+..++++|+..|..+.
T Consensus 323 I~aLe~QIa~er~kl~ 338 (434)
T PRK15178 323 IKVLEKQIGEQRNRLS 338 (434)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6666666666666664
No 178
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=70.40 E-value=3e+02 Score=34.85 Aligned_cols=57 Identities=12% Similarity=0.081 Sum_probs=30.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 006637 350 DAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTE 406 (637)
Q Consensus 350 aALelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve 406 (637)
+-+-.++.+.++.......|-..-+.+...+-+-.+.+-+++......+.+.+.++.
T Consensus 230 ~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~ 286 (1141)
T KOG0018|consen 230 EKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLA 286 (1141)
T ss_pred hhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555555555555555555555555555555555555555555555544443
No 179
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=70.18 E-value=2.6e+02 Score=34.00 Aligned_cols=57 Identities=23% Similarity=0.332 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 465 KLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEA 521 (637)
Q Consensus 465 k~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLER 521 (637)
.++..|+.+...+........++..++..+...+-.-+..++.+......+..++..
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 442 (908)
T COG0419 386 QLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQ 442 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433332234444444444444444455555555555555544444
No 180
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=70.15 E-value=88 Score=32.89 Aligned_cols=60 Identities=20% Similarity=0.193 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006637 364 MEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH 423 (637)
Q Consensus 364 ~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~ 423 (637)
.+++.....++..+..+.++|+..++.+.....+...++.+...++.......+.++...
T Consensus 179 ~~fl~~~~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~ 238 (297)
T PF02841_consen 179 QEFLQSKESMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQE 238 (297)
T ss_dssp HHHHHHCHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777777788888888888888777777777777766666665555555443
No 181
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=70.08 E-value=2.1e+02 Score=32.99 Aligned_cols=41 Identities=24% Similarity=0.261 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 485 IELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRL 525 (637)
Q Consensus 485 ~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERlerl 525 (637)
.-|+..-.++.+.+-+|+.++..|.....-|-|.||.-+.+
T Consensus 417 ~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~qqkl 457 (493)
T KOG0804|consen 417 GKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLEAQQKL 457 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhhhhhh
Confidence 44555555667777788888888888888888888876544
No 182
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=69.74 E-value=1.7e+02 Score=31.79 Aligned_cols=30 Identities=27% Similarity=0.253 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcch
Q 006637 397 QVAELRQQTELKEVAHEELSQRNSNTHQTG 426 (637)
Q Consensus 397 rvaELrqkve~LE~e~esLRqeL~~a~Q~~ 426 (637)
.+..|++++..++.++..+++....-|...
T Consensus 255 ~i~~l~~~l~~le~~l~~l~~~y~~~hP~v 284 (444)
T TIGR03017 255 IIQNLKTDIARAESKLAELSQRLGPNHPQY 284 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcHH
Confidence 455677777777777777777665555443
No 183
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=69.52 E-value=1.7e+02 Score=31.65 Aligned_cols=66 Identities=21% Similarity=0.179 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 446 EAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTE-VEIELKRRLGQLTDHLIQKQAQVEALSSEKATLA 516 (637)
Q Consensus 446 e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~-~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~ 516 (637)
+-+++.+.+...+|+.-++++|+-...|..+- ..|. ...+++.||.+-+ .|-+.||+=.-||..|.
T Consensus 97 eddlsqt~aikeql~kyiReLEQaNDdLErak-Rati~sleDfeqrLnqAI----ErnAfLESELdEke~ll 163 (333)
T KOG1853|consen 97 EDDLSQTHAIKEQLRKYIRELEQANDDLERAK-RATIYSLEDFEQRLNQAI----ERNAFLESELDEKEVLL 163 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHhh-hhhhhhHHHHHHHHHHHH----HHHHHHHHHhhHHHHHH
Confidence 34444444444455666666665444333322 1122 3467888886544 44445555444444444
No 184
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=68.97 E-value=1.7e+02 Score=31.34 Aligned_cols=20 Identities=10% Similarity=0.114 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006637 398 VAELRQQTELKEVAHEELSQ 417 (637)
Q Consensus 398 vaELrqkve~LE~e~esLRq 417 (637)
+.+|+.++..++.++..++.
T Consensus 216 i~~L~~~l~~~~~~l~~l~~ 235 (362)
T TIGR01010 216 ISTLEGELIRVQAQLAQLRS 235 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444443
No 185
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=68.67 E-value=88 Score=36.31 Aligned_cols=86 Identities=14% Similarity=0.187 Sum_probs=47.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhH-hHHH----HhhchHHHHHH----HHHHHHHHHHHHHHHH
Q 006637 390 KLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYL-KRLA----ASKGVEFEREI----LEAEYTFIADKIIQLE 460 (637)
Q Consensus 390 kLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa-~Ql~----a~~~~EaElE~----~e~Els~Le~el~~Le 460 (637)
.+.+.+.+......|......+|..|..+|..+.+..... .++. .-...+.|++. -+.-++.|.+-|+.|.
T Consensus 421 RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmN 500 (518)
T PF10212_consen 421 RIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMN 500 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3444444444555555566666666666666554333221 1111 12334444433 3455667777777777
Q ss_pred HHHHHHHHHHHHHHH
Q 006637 461 DKAKKLEGNIEMTRK 475 (637)
Q Consensus 461 ~klqk~E~EIe~LR~ 475 (637)
+++.+..++|+.++.
T Consensus 501 eqL~~Q~eeI~~LK~ 515 (518)
T PF10212_consen 501 EQLAKQREEIQTLKL 515 (518)
T ss_pred HHHHHHHHHHHHHhh
Confidence 777777777777773
No 186
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=68.15 E-value=5.4 Score=46.60 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006637 502 QAQVEALSSEKATLAFRIEAV 522 (637)
Q Consensus 502 QTQLEsLsSEK~AL~lQLERl 522 (637)
+..++.|..++..|..+|+++
T Consensus 516 e~e~~~L~~~~~~Le~~l~~~ 536 (722)
T PF05557_consen 516 ERENERLRQELEELESELEKL 536 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 445556666666666666653
No 187
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=67.78 E-value=1.5e+02 Score=30.24 Aligned_cols=54 Identities=24% Similarity=0.281 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006637 370 LAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH 423 (637)
Q Consensus 370 Ea~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~ 423 (637)
..+|+.........|...+..+.....++..+...-......+.+.+++++.+.
T Consensus 80 ~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~ 133 (240)
T PF12795_consen 80 LEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIR 133 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence 345555555555556666666666666666666655556666666666666654
No 188
>PRK10698 phage shock protein PspA; Provisional
Probab=67.58 E-value=1.5e+02 Score=30.35 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 383 ALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 418 (637)
Q Consensus 383 ALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqe 418 (637)
+|..+...+.........+++++...+...+.+..+
T Consensus 39 ~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~k 74 (222)
T PRK10698 39 TLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEK 74 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444444444444444443
No 189
>PRK11519 tyrosine kinase; Provisional
Probab=67.24 E-value=2.7e+02 Score=33.05 Aligned_cols=15 Identities=13% Similarity=0.306 Sum_probs=8.4
Q ss_pred CCCCCCCccchHHHh
Q 006637 43 PSKSSGSVSLKDQLK 57 (637)
Q Consensus 43 ~~k~~~~~~~~~~~~ 57 (637)
|-.....+.|++.+.
T Consensus 11 ~~~~~~~idl~~l~~ 25 (719)
T PRK11519 11 PVTGSDEIDIGRLVG 25 (719)
T ss_pred CCCCcCCcCHHHHHH
Confidence 444444567777664
No 190
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=67.18 E-value=2.9e+02 Score=33.47 Aligned_cols=117 Identities=22% Similarity=0.260 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--------
Q 006637 287 RKLKEKILAEKAAAKAGDAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQR-------- 358 (637)
Q Consensus 287 r~~~~~~~ae~~a~kA~~~i~eRe~~va~Le~Ek~~leklleEr~~qQ~~easelq~~mlaS~aALelEk~a-------- 358 (637)
++=|+|+|+=-+=-|+-. -+....+..|.+..++|++.+... .+|..=||.+.=.-.+.+++|+..
T Consensus 309 ~~WREKVFaLmVQLkaQe--leh~~~~~qL~~qVAsLQeev~sq----~qEqaiLq~SLqDK~AElevERv~sktLQ~EL 382 (739)
T PF07111_consen 309 SRWREKVFALMVQLKAQE--LEHRDSVKQLRGQVASLQEEVASQ----QQEQAILQHSLQDKAAELEVERVGSKTLQAEL 382 (739)
T ss_pred HHHHHHHHHHHHHhhHHH--HHhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHH
Confidence 344667776555555433 256677888999999988877433 334445555554444555555322
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006637 359 --HNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKE 409 (637)
Q Consensus 359 --HsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE 409 (637)
-...+...+.+-...++..--+..|+..+|..|+.....+...-..+..|.
T Consensus 383 srAqea~~~lqqq~~~aee~Lk~v~eav~S~q~~L~s~ma~ve~a~aRL~sL~ 435 (739)
T PF07111_consen 383 SRAQEARRRLQQQTASAEEQLKLVSEAVSSSQQWLESQMAKVEQALARLPSLS 435 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 122222233333334444445566666666666655544444333333333
No 191
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=67.03 E-value=1.7e+02 Score=30.59 Aligned_cols=77 Identities=22% Similarity=0.165 Sum_probs=41.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 393 METNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEM 472 (637)
Q Consensus 393 ee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~a~~~~EaElE~~e~Els~Le~el~~Le~klqk~E~EIe~ 472 (637)
.+..-+.+++.+...|..+-.+.-.+|..++|-...+..+ ....+.|.....+.+..++.....+..+|+.
T Consensus 29 ~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~i---------Ikqa~~er~~~~~~i~r~~eey~~Lk~~in~ 99 (230)
T PF10146_consen 29 NEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENI---------IKQAESERNKRQEKIQRLYEEYKPLKDEINE 99 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444333222222 2222344444556666777778888888888
Q ss_pred HHHH-hC
Q 006637 473 TRKE-IE 478 (637)
Q Consensus 473 LR~~-ls 478 (637)
+|.+ +.
T Consensus 100 ~R~e~lg 106 (230)
T PF10146_consen 100 LRKEYLG 106 (230)
T ss_pred HHHHHcC
Confidence 8888 54
No 192
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=66.85 E-value=92 Score=31.99 Aligned_cols=88 Identities=17% Similarity=0.240 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHH----HHHHHHHHHHhhhhhhcchhhHhHHHHhhchHHHH
Q 006637 371 AKLETANADLARALAAAQKKLEME----TNQVAELRQQTEL----KEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFER 442 (637)
Q Consensus 371 a~LE~enaeLAkALA~~QRkLeee----~~rvaELrqkve~----LE~e~esLRqeL~~a~Q~~~sa~Ql~a~~~~EaEl 442 (637)
+.|+-+.++|..-|+.+++..... ....+..+.+++- ++.++.++.. ..... ..-+
T Consensus 99 vrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~---~~~~~-------------~~~l 162 (195)
T PF12761_consen 99 VRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEE---GRSKS-------------GKNL 162 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhc---cCCCC-------------CCCH
Confidence 445667778888888888777762 2334444444432 2222222211 00000 0112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 443 EILEAEYTFIADKIIQLEDKAKKLEGNIEMTR 474 (637)
Q Consensus 443 E~~e~Els~Le~el~~Le~klqk~E~EIe~LR 474 (637)
..++..|..+++++..|+.=|+.++.|++.|+
T Consensus 163 ~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 163 KSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 23466777888888888888888888888876
No 193
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=66.30 E-value=2.6e+02 Score=32.62 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006637 397 QVAELRQQTELKEVAHEELSQRNSNT 422 (637)
Q Consensus 397 rvaELrqkve~LE~e~esLRqeL~~a 422 (637)
.+..|..++..++.+++.+.++|..+
T Consensus 392 ~~~~~~~~~~~~e~el~~l~~~l~~~ 417 (650)
T TIGR03185 392 AKSQLLKELRELEEELAEVDKKISTI 417 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44455555555555565555555443
No 194
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=66.19 E-value=3.9e+02 Score=34.54 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHH
Q 006637 291 EKILAEKAAAKAGDAIKERENMVARLEGEKQSLEKIL 327 (637)
Q Consensus 291 ~~~~ae~~a~kA~~~i~eRe~~va~Le~Ek~~lekll 327 (637)
++|-.++.+.....+.-|+.+....++...+.++.+-
T Consensus 848 ~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle 884 (1294)
T KOG0962|consen 848 EVIEQEREISRLINLRNELKEEKQKIERSLARLQQLE 884 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4477888888888888888888888887777766443
No 195
>PRK10698 phage shock protein PspA; Provisional
Probab=66.16 E-value=1.6e+02 Score=30.15 Aligned_cols=57 Identities=19% Similarity=0.213 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006637 366 ALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT 422 (637)
Q Consensus 366 AlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a 422 (637)
|+.|-...+...+.|...+...+..++.....+..|+.++.........|..+..-+
T Consensus 90 AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A 146 (222)
T PRK10698 90 ALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAA 146 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555556666666666666666666666666666666555555555554444
No 196
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=65.68 E-value=2.1e+02 Score=31.19 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 498 LIQKQAQVEALSSEKATLAFRIEA 521 (637)
Q Consensus 498 LIqKQTQLEsLsSEK~AL~lQLER 521 (637)
|-.++.+++.|..|....+-.++.
T Consensus 337 l~~~~~~~~~L~r~~~~~~~~y~~ 360 (444)
T TIGR03017 337 LNRQRDEMSVLQRDVENAQRAYDA 360 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555444
No 197
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=65.62 E-value=1.7e+02 Score=30.31 Aligned_cols=7 Identities=29% Similarity=0.544 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 006637 400 ELRQQTE 406 (637)
Q Consensus 400 ELrqkve 406 (637)
.|+.++.
T Consensus 56 ~~e~~~~ 62 (225)
T COG1842 56 QLERKLE 62 (225)
T ss_pred HHHHHHH
Confidence 3333333
No 198
>PTZ00121 MAEBL; Provisional
Probab=65.47 E-value=4.4e+02 Score=34.90 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=10.5
Q ss_pred CCCCCccccchhhhcc
Q 006637 93 KPKSTLTDSDWTELLG 108 (637)
Q Consensus 93 ~~~~~~~~~~~~~~~~ 108 (637)
.|.-|.+-.|||-|-|
T Consensus 885 ~p~Kt~~~KnwtYvSS 900 (2084)
T PTZ00121 885 IIRKTLDSKDWTYVSS 900 (2084)
T ss_pred ccccccccccceeecc
Confidence 4566677777776654
No 199
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=65.30 E-value=3.2e+02 Score=33.32 Aligned_cols=69 Identities=26% Similarity=0.247 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhH
Q 006637 361 NTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYL 429 (637)
Q Consensus 361 aTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa 429 (637)
..|.+...+++++....+.+...-++.-+.|+++..-+.+|...-...+.++..|..+|+.+...-.++
T Consensus 85 ~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~L 153 (769)
T PF05911_consen 85 KIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSL 153 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554444444455555677777777777777777777777777777665444443
No 200
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=63.77 E-value=2.8e+02 Score=32.07 Aligned_cols=65 Identities=15% Similarity=0.187 Sum_probs=40.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 314 ARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARA 383 (637)
Q Consensus 314 a~Le~Ek~~leklleEr~~qQ~~easelq~~mlaS~aALelEk~aHsaTR~qAlaREa~LE~enaeLAkA 383 (637)
+.|++.++.++.++ +-+.+.+..++.|.+....++.=++.|+.+-...+.++..+++.|..|-+-
T Consensus 347 sqlen~k~~~e~~~-----~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~kn 411 (493)
T KOG0804|consen 347 SQLENQKQYYELLI-----TEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKN 411 (493)
T ss_pred HHHHhHHHHHHHHH-----HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 78999999988888 444455555666666666666666666555555555555555444444433
No 201
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=63.67 E-value=2.6e+02 Score=31.58 Aligned_cols=32 Identities=38% Similarity=0.435 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 006637 373 LETANADLARALAAAQKKLEMETNQVAELRQQ 404 (637)
Q Consensus 373 LE~enaeLAkALA~~QRkLeee~~rvaELrqk 404 (637)
-|-.|.-.+..|+..|++|+.=..+..+|++.
T Consensus 53 FekkNqksa~~i~~lqkkL~~y~~~l~ele~~ 84 (395)
T PF10267_consen 53 FEKKNQKSAQTIAQLQKKLEQYHKRLKELEQG 84 (395)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34456666666666666666666666666544
No 202
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=63.46 E-value=68 Score=37.96 Aligned_cols=31 Identities=32% Similarity=0.438 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 486 ELKRRLGQLTDHLIQKQAQVEALSSEKATLA 516 (637)
Q Consensus 486 ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~ 516 (637)
.++.++..|.-.|..|-..+|.|..+.+.+.
T Consensus 478 ~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 478 ARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677788888888888888888877777666
No 203
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=63.18 E-value=6.8 Score=42.59 Aligned_cols=71 Identities=17% Similarity=0.292 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 446 EAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVS 523 (637)
Q Consensus 446 e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERle 523 (637)
..+|..+.-.|..++..+..+...|.-|...+..-......|...+..+ .+.+-+|.+..+++.+++--++
T Consensus 76 ~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~l-------sTdvsNLksdVSt~aL~ItdLe 146 (326)
T PF04582_consen 76 TSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSAL-------STDVSNLKSDVSTQALNITDLE 146 (326)
T ss_dssp ------------------------------------------HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhh-------hhhhhhhhhhhhhhcchHhhHH
Confidence 3445555555666666666666666666666654333334455555444 4566677777777777777765
No 204
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=63.12 E-value=2.2e+02 Score=30.68 Aligned_cols=76 Identities=20% Similarity=0.295 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 448 EYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVS 523 (637)
Q Consensus 448 Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERle 523 (637)
++...++.+...+.++..++..|+.++.+...-......|+..+......|-.=+.-+..|..|+.-|.-+++.++
T Consensus 229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~ 304 (344)
T PF12777_consen 229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELE 304 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHH
Confidence 3333444444444555555555555555554333334555555555566666666666666666666665555543
No 205
>PF13514 AAA_27: AAA domain
Probab=62.71 E-value=3.9e+02 Score=33.34 Aligned_cols=44 Identities=20% Similarity=0.350 Sum_probs=35.8
Q ss_pred Cchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 480 PTEV-EIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVS 523 (637)
Q Consensus 480 pT~~-q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERle 523 (637)
|+.. -..+..++..+...+-..+..++.+..+...++.+++.+.
T Consensus 449 P~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 493 (1111)
T PF13514_consen 449 PSRETVEAFRAEFEELERQLRRARDRLEELEEELARLEARLRRLA 493 (1111)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 3566788899999999999999999999999998888874
No 206
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=62.71 E-value=3.9e+02 Score=33.30 Aligned_cols=16 Identities=13% Similarity=0.156 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHhC
Q 006637 463 AKKLEGNIEMTRKEIE 478 (637)
Q Consensus 463 lqk~E~EIe~LR~~ls 478 (637)
..+++++|+.+++-+-
T Consensus 388 ~aerqeQidelKn~if 403 (1265)
T KOG0976|consen 388 QAERQEQIDELKNHIF 403 (1265)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3455555555555443
No 207
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=62.63 E-value=1.8e+02 Score=29.44 Aligned_cols=58 Identities=22% Similarity=0.255 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006637 366 ALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH 423 (637)
Q Consensus 366 AlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~ 423 (637)
|+.|-...+.....|...+...+..++....++..|+.++.........|.-+...+.
T Consensus 90 Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~ 147 (219)
T TIGR02977 90 ALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAAS 147 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666777777777777777777777777777777777777776666655544
No 208
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=62.55 E-value=1.9e+02 Score=29.67 Aligned_cols=61 Identities=11% Similarity=0.143 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006637 362 TRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT 422 (637)
Q Consensus 362 TR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a 422 (637)
++.+.+.|..++..+-..+..-+...++.++........++..+...+.+.++|.+++...
T Consensus 36 ~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 36 AAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666655555555555555555555555555555555555544433
No 209
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=62.40 E-value=3e+02 Score=31.89 Aligned_cols=33 Identities=21% Similarity=0.183 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 445 LEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 477 (637)
Q Consensus 445 ~e~Els~Le~el~~Le~klqk~E~EIe~LR~~l 477 (637)
++-|.++++-+.+.-+.+++......+++++--
T Consensus 345 ~E~E~q~~~kkrqnaekql~~Ake~~eklkKKr 377 (575)
T KOG4403|consen 345 HEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKR 377 (575)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 556777777777777777777777777776543
No 210
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=62.31 E-value=59 Score=36.66 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 451 FIADKIIQLEDKAKKLEGNIEMTRKEI 477 (637)
Q Consensus 451 ~Le~el~~Le~klqk~E~EIe~LR~~l 477 (637)
.+...+..++.++.+++++|+.+++++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~l~~l~~~l 168 (525)
T TIGR02231 142 RLLTEDREAERRIRELEKQLSELQNEL 168 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444443
No 211
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.28 E-value=1.3e+02 Score=33.09 Aligned_cols=33 Identities=15% Similarity=0.164 Sum_probs=28.8
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhc
Q 006637 581 GVVFLRRNPIAKLWSLVYLVCLHLWVIYILLSH 613 (637)
Q Consensus 581 lgrfLrR~P~ARllfiiYlllLHLwVf~vL~~~ 613 (637)
++++.+.+...|.|.++++|+|-+.++|+.|+|
T Consensus 283 irka~~~~~~~r~~~lf~llvlsf~lLFldwy~ 315 (316)
T KOG3894|consen 283 IRKAKRNNGGLRVFLLFFLLVLSFSLLFLDWYY 315 (316)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHhhcC
Confidence 557788889999999999999999999988876
No 212
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=62.18 E-value=99 Score=26.31 Aligned_cols=57 Identities=25% Similarity=0.211 Sum_probs=36.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 350 DAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 417 (637)
Q Consensus 350 aALelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRq 417 (637)
.||+.|..++..-.. +.-..-.+--+++..|++-..+..+|.+++..|+.+.+.+|.
T Consensus 4 saL~~EirakQ~~~e-----------EL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 4 SALEAEIRAKQAIQE-----------ELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467777777654332 222223334556777888888888888888888777776653
No 213
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=62.09 E-value=2.3e+02 Score=32.95 Aligned_cols=39 Identities=21% Similarity=0.411 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 485 IELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVS 523 (637)
Q Consensus 485 ~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERle 523 (637)
.++++.|+-|-+.|..=|..|..-..||.+|+++|++++
T Consensus 386 nd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k 424 (527)
T PF15066_consen 386 NDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIK 424 (527)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 578899999999999999999999999999999999986
No 214
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=62.08 E-value=83 Score=30.50 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 483 VEIELKRRLGQLTDHLIQKQAQVEALSSEKATLA 516 (637)
Q Consensus 483 ~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~ 516 (637)
.+..|...+......|.+.|.+|+.|.-|+..++
T Consensus 62 ~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR 95 (135)
T TIGR03495 62 AQAQLRQQLAQARALLAQREQRIERLKRENEDLR 95 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 4566666666677777777777777777666554
No 215
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=62.00 E-value=1.7e+02 Score=29.99 Aligned_cols=17 Identities=12% Similarity=0.253 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhCCCc
Q 006637 465 KLEGNIEMTRKEIEDPT 481 (637)
Q Consensus 465 k~E~EIe~LR~~ls~pT 481 (637)
.+.+-|+.|+..+..+.
T Consensus 128 eR~~Rl~~L~~~l~~~d 144 (251)
T PF11932_consen 128 ERQERLARLRAMLDDAD 144 (251)
T ss_pred HHHHHHHHHHHhhhccC
Confidence 44455566666665544
No 216
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=61.38 E-value=2.8e+02 Score=34.91 Aligned_cols=14 Identities=21% Similarity=0.339 Sum_probs=8.1
Q ss_pred ccccCCcccccccc
Q 006637 68 GKLQSDPNVKNVYN 81 (637)
Q Consensus 68 ~~~~~~~~~~~~~~ 81 (637)
|-+|.|..-.||+=
T Consensus 145 ~IVHRDLKPeNILL 158 (1021)
T PTZ00266 145 RVLHRDLKPQNIFL 158 (1021)
T ss_pred CceeccCcHHHeEe
Confidence 45666666556543
No 217
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=61.07 E-value=3e+02 Score=31.49 Aligned_cols=79 Identities=24% Similarity=0.287 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHH--HHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006637 304 DAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSM--MET-MDAFELEKQRHNNTRMEALQLLAKLETANADL 380 (637)
Q Consensus 304 ~~i~eRe~~va~Le~Ek~~leklleEr~~qQ~~easelq~~m--laS-~aALelEk~aHsaTR~qAlaREa~LE~enaeL 380 (637)
.+=-||+..-..+..-+..+-|-+-+.+.-+. .+..||+-+ |.+ -+-|+.|+++-.+.+-+.++--..|..+.-+|
T Consensus 113 ~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~-Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L 191 (499)
T COG4372 113 KARQEREAVRQELAAARQNLAKAQQELARLTK-QAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDL 191 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666677666666666655554443 233455433 222 24477888887777777777767777666666
Q ss_pred HHH
Q 006637 381 ARA 383 (637)
Q Consensus 381 AkA 383 (637)
-+-
T Consensus 192 ~~r 194 (499)
T COG4372 192 KLR 194 (499)
T ss_pred HHH
Confidence 443
No 218
>PRK09343 prefoldin subunit beta; Provisional
Probab=60.79 E-value=1.4e+02 Score=27.89 Aligned_cols=30 Identities=23% Similarity=0.163 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 006637 384 LAAAQKKLEMETNQVAELRQQTELKEVAHE 413 (637)
Q Consensus 384 LA~~QRkLeee~~rvaELrqkve~LE~e~e 413 (637)
+-..|..+..-..+...|..+....+...+
T Consensus 16 ~q~lq~~l~~~~~q~~~le~q~~e~~~~~~ 45 (121)
T PRK09343 16 LQQLQQQLERLLQQKSQIDLELREINKALE 45 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 219
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=60.79 E-value=1.9e+02 Score=29.10 Aligned_cols=91 Identities=22% Similarity=0.248 Sum_probs=63.5
Q ss_pred HHHHHHHhHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHH--h--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 312 MVARLEGEKQSLEKILEERA--KQQVKEASELQTSMMETMDAFELEKQR--H--NNTRMEALQLLAKLETANADLARALA 385 (637)
Q Consensus 312 ~va~Le~Ek~~leklleEr~--~qQ~~easelq~~mlaS~aALelEk~a--H--saTR~qAlaREa~LE~enaeLAkALA 385 (637)
++.+|+.|.+..+.|.+-+. ++|- ..|-.++.+|..++.+ + ...+.+...++.....+...+..++.
T Consensus 65 ~l~rLeEEqqR~~~L~qvN~lLReQL-------Eq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~ 137 (182)
T PF15035_consen 65 ALIRLEEEQQRSEELAQVNALLREQL-------EQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLS 137 (182)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 88999999999888775554 3333 2234556665555443 2 22345788889999999999999998
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Q 006637 386 AAQKKLEMETNQVAELRQQTELKE 409 (637)
Q Consensus 386 ~~QRkLeee~~rvaELrqkve~LE 409 (637)
..+..+=..=.+|..|+..+..+.
T Consensus 138 ~eh~rll~LWr~v~~lRr~f~elr 161 (182)
T PF15035_consen 138 SEHSRLLSLWREVVALRRQFAELR 161 (182)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHH
Confidence 888877776677777776665443
No 220
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=60.28 E-value=1.9e+02 Score=28.98 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhHHH
Q 006637 307 KERENMVARLEGEKQS 322 (637)
Q Consensus 307 ~eRe~~va~Le~Ek~~ 322 (637)
.||+.++.++..+-..
T Consensus 80 ~ERGlLL~rvrde~~~ 95 (189)
T PF10211_consen 80 PERGLLLLRVRDEYRM 95 (189)
T ss_pred HHHhHHHHHHHHHHHH
Confidence 5899999998888665
No 221
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=59.46 E-value=23 Score=29.32 Aligned_cols=42 Identities=24% Similarity=0.219 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 348 TMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQK 389 (637)
Q Consensus 348 S~aALelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QR 389 (637)
....+..|+.++.-.+..|-.|..+|+.+|..|-+-|...|-
T Consensus 9 Le~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 9 LERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred HHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677788899999999999999999999999988877653
No 222
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=59.00 E-value=3.3e+02 Score=31.30 Aligned_cols=33 Identities=18% Similarity=0.106 Sum_probs=15.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 351 AFELEKQRHNNTRMEALQLLAKLETANADLARA 383 (637)
Q Consensus 351 ALelEk~aHsaTR~qAlaREa~LE~enaeLAkA 383 (637)
.+..++..+.....+...|...|+....++.++
T Consensus 172 ~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~ 204 (563)
T TIGR00634 172 KARQQLKDRQQKEQELAQRLDFLQFQLEELEEA 204 (563)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhC
Confidence 344444444444444455555555555444443
No 223
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.92 E-value=3.8e+02 Score=32.00 Aligned_cols=148 Identities=18% Similarity=0.172 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHH-----H
Q 006637 371 AKLETANADLARALAAAQKKL-----------EMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLA-----A 434 (637)
Q Consensus 371 a~LE~enaeLAkALA~~QRkL-----------eee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~-----a 434 (637)
.+|+..+.++..+.+.-++-. ++-.++-+.+-+++..|+.++-.++++|.+.+-..+++.++. .
T Consensus 64 ~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~ 143 (772)
T KOG0999|consen 64 TELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKES 143 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 345666667776655544432 233345556677788899999999999888775555543322 3
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHH------HHHHHHHHHHHHHHHHHHHH
Q 006637 435 SKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELK------RRLGQLTDHLIQKQAQVEAL 508 (637)
Q Consensus 435 ~~~~EaElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE------~RL~qLTE~LIqKQTQLEsL 508 (637)
...+|.++-+++.|+...+-.=+.|=.....++.|.=-|.++++.--.+++|+| +||..=|+.|- .|+|.+
T Consensus 144 ~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln---~q~ee~ 220 (772)
T KOG0999|consen 144 NAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLN---SQLEEA 220 (772)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 556677777778777766655555555556677666666666654334566666 56666565554 566665
Q ss_pred HHHHHHHHHHHHH
Q 006637 509 SSEKATLAFRIEA 521 (637)
Q Consensus 509 sSEK~AL~lQLER 521 (637)
..=|---..|||.
T Consensus 221 ~~Lk~IAekQlEE 233 (772)
T KOG0999|consen 221 IRLKEIAEKQLEE 233 (772)
T ss_pred HHHHHHHHHHHHH
Confidence 5544444455554
No 224
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=58.81 E-value=3.4e+02 Score=31.35 Aligned_cols=63 Identities=32% Similarity=0.407 Sum_probs=35.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHH
Q 006637 313 VARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNT----RMEALQLLAKLETANADLAR 382 (637)
Q Consensus 313 va~Le~Ek~~leklleEr~~qQ~~easelq~~mlaS~aALelEk~aHsaT----R~qAlaREa~LE~enaeLAk 382 (637)
.-+|+.||-.||-+| .|-|| =+.+-.|....-++.+...-+.| |.++..=+.+||.|..++-.
T Consensus 138 l~qLr~ek~~lEq~l-----eqeqe--f~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN 204 (552)
T KOG2129|consen 138 LKQLRHEKLPLEQLL-----EQEQE--FFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVN 204 (552)
T ss_pred HHHHHhhhccHHHHH-----HHHHH--HHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456777888888887 33322 23345666666666665555554 44455555555555444433
No 225
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.79 E-value=3.5e+02 Score=31.47 Aligned_cols=30 Identities=37% Similarity=0.189 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 006637 378 ADLARALAAAQKKLEMETNQVAELRQQTEL 407 (637)
Q Consensus 378 aeLAkALA~~QRkLeee~~rvaELrqkve~ 407 (637)
.+-..+|+..+..+.....++..|-++++-
T Consensus 289 ~dgeayLaKL~~~l~~~~~~~~~ltqqwed 318 (521)
T KOG1937|consen 289 DDGEAYLAKLMGKLAELNKQMEELTQQWED 318 (521)
T ss_pred CChHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788888888888888877777644
No 226
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=58.46 E-value=1.3e+02 Score=34.05 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 446 EAEYTFIADKIIQLEDKAKKLEGNIEMT 473 (637)
Q Consensus 446 e~Els~Le~el~~Le~klqk~E~EIe~L 473 (637)
..++..++.++..++.++..++.++..+
T Consensus 144 ~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 144 LTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444455555555444444
No 227
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=57.93 E-value=3.3e+02 Score=30.99 Aligned_cols=55 Identities=31% Similarity=0.398 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHH
Q 006637 445 LEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQ 502 (637)
Q Consensus 445 ~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQ 502 (637)
.++-++.+.+.+-.|+++++.+ |+++|.-++..-+...+|++++..+..-|++=|
T Consensus 228 ~ks~i~ei~~sl~~l~d~lk~~---~q~~~~~~enr~~e~m~l~k~~nslkp~l~~lr 282 (464)
T KOG4637|consen 228 LKSRIREIHDSLTRLEDDLKAL---IQALRSNSENRLCELMELDKAMNSLKPDLIQLR 282 (464)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH---HHHHhhhhhhhhHHHHHHHHHHhhcCchHHHHH
Confidence 3555667777777777766655 788887777766677889999999888888443
No 228
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=57.88 E-value=2.3e+02 Score=29.19 Aligned_cols=36 Identities=8% Similarity=0.233 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 006637 446 EAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPT 481 (637)
Q Consensus 446 e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT 481 (637)
+.|.+.|..+....+.+|.+++..|..|..+.+.|.
T Consensus 153 r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~~~~ 188 (192)
T PF11180_consen 153 RQEAQALEAERRAAQAQLRQLQRQVRQLQRQANEPI 188 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666667777777888888888888877776654
No 229
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=57.74 E-value=60 Score=29.92 Aligned_cols=82 Identities=21% Similarity=0.265 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcch---hhHhHHH---HhhchHHHHHHHHHHHHHHHHHHH
Q 006637 384 LAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTG---IYLKRLA---ASKGVEFEREILEAEYTFIADKII 457 (637)
Q Consensus 384 LA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~---~sa~Ql~---a~~~~EaElE~~e~Els~Le~el~ 457 (637)
.+..+++|++-.-+++.|+.++..++.+-+.|..+|..+.-.. .+..... ...+.+.+ ++.|+.....++.
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~---l~~eLk~a~~qi~ 79 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAE---LQEELKLAREQIN 79 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHH---HHHHHHHHHHHHH
Confidence 3677899999999999999999999999999999988875211 1111100 01112222 3566667777777
Q ss_pred HHHHHHHHHHH
Q 006637 458 QLEDKAKKLEG 468 (637)
Q Consensus 458 ~Le~klqk~E~ 468 (637)
.|..++.+++-
T Consensus 80 ~Ls~kv~eLq~ 90 (96)
T PF11365_consen 80 ELSGKVMELQY 90 (96)
T ss_pred HHhhHHHHHhh
Confidence 77777777664
No 230
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=57.55 E-value=2.4e+02 Score=29.16 Aligned_cols=42 Identities=12% Similarity=0.045 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006637 380 LARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSN 421 (637)
Q Consensus 380 LAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~ 421 (637)
+..-|..++...-+...+..-+++-+.-.....+.|+.-+.+
T Consensus 81 ~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~e 122 (207)
T PF05010_consen 81 AYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEE 122 (207)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333333333333333333333333333333334444433333
No 231
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=57.47 E-value=60 Score=27.53 Aligned_cols=46 Identities=15% Similarity=0.120 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 006637 367 LQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAH 412 (637)
Q Consensus 367 laREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~ 412 (637)
..|...||...+=....|......+-....+++.|+.++..|...+
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 48 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERL 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555544444444444444444444444333333
No 232
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=57.42 E-value=2e+02 Score=28.25 Aligned_cols=104 Identities=24% Similarity=0.261 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHHH--hhchHHHHH
Q 006637 367 LQLLAKLETANADLARALAAAQKKLEM-ETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAA--SKGVEFERE 443 (637)
Q Consensus 367 laREa~LE~enaeLAkALA~~QRkLee-e~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~a--~~~~EaElE 443 (637)
++.-.+++...-.+..+++.....++- +....+.++.+.+.|+.+++.|+++|..-- ..+.+ ......|..
T Consensus 43 ~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei------~~l~a~~klD~n~eK~ 116 (177)
T PF07798_consen 43 LVTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEI------NKLRAEVKLDLNLEKG 116 (177)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhHH
Confidence 344456666666667777777766653 345777888888888888888888765532 11212 112223334
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 006637 444 ILEAEYTFIADKIIQLEDK----AKKLEGNIEMTRKE 476 (637)
Q Consensus 444 ~~e~Els~Le~el~~Le~k----lqk~E~EIe~LR~~ 476 (637)
+.+.|...++.+|..+..+ +..+..+|+.++.+
T Consensus 117 ~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~ 153 (177)
T PF07798_consen 117 RIREEQAKQELKIQELNNKIDTEIANLRTEIESLKWD 153 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777654443 33444444444433
No 233
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=57.12 E-value=5.2e+02 Score=32.97 Aligned_cols=57 Identities=12% Similarity=0.072 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006637 363 RMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRN 419 (637)
Q Consensus 363 R~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL 419 (637)
++..+++.+-|+.++..+..++.......+--..+.+.+..++..++...+.|+..+
T Consensus 175 ~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~i 231 (1109)
T PRK10929 175 LTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQL 231 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666666666666665555555555555555555555555555555443
No 234
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.06 E-value=2.8e+02 Score=29.85 Aligned_cols=63 Identities=10% Similarity=0.116 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006637 361 NTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH 423 (637)
Q Consensus 361 aTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~ 423 (637)
..-.+++.-+..++.+...|-.-+...+.++++...+++++.++++.++.+++.++.+|...+
T Consensus 38 s~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 38 SKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555667777888888888888888888888888888888888888888888777753
No 235
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=56.93 E-value=1.5e+02 Score=26.63 Aligned_cols=78 Identities=24% Similarity=0.383 Sum_probs=52.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 310 ENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQK 389 (637)
Q Consensus 310 e~~va~Le~Ek~~leklleEr~~qQ~~easelq~~mlaS~aALelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QR 389 (637)
+.++.+|++....||+-++.|-.... ...++...+ +.+...+.+-..--.++.+|...|+..|.+...-|-.+.-
T Consensus 7 e~al~rL~~aid~LE~~v~~r~~~~~-~~~~~e~ei----~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e 81 (89)
T PF13747_consen 7 EAALTRLEAAIDRLEKAVDRRLERDR-KRDELEEEI----QRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIE 81 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhHHHHH----HHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999977764333 224444433 3334444444445567888889999999888888776655
Q ss_pred HHH
Q 006637 390 KLE 392 (637)
Q Consensus 390 kLe 392 (637)
.+.
T Consensus 82 ~Ir 84 (89)
T PF13747_consen 82 TIR 84 (89)
T ss_pred HHH
Confidence 543
No 236
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=56.60 E-value=5.6e+02 Score=33.23 Aligned_cols=60 Identities=22% Similarity=0.269 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006637 364 MEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH 423 (637)
Q Consensus 364 ~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~ 423 (637)
++.+.=..+|......+..-+..+|++++--..+|.+++.++...+..++.++-.+.+..
T Consensus 205 ~~~l~~lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~el~ 264 (1294)
T KOG0962|consen 205 KQELEHLKTLKERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLKELE 264 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333444555666666677777888888888888888888887776666666655544443
No 237
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=56.39 E-value=1.7e+02 Score=28.19 Aligned_cols=13 Identities=31% Similarity=0.455 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 006637 463 AKKLEGNIEMTRK 475 (637)
Q Consensus 463 lqk~E~EIe~LR~ 475 (637)
+..++..++.++.
T Consensus 125 ~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 125 IEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHh
Confidence 3333333333343
No 238
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=56.19 E-value=1.3e+02 Score=25.95 Aligned_cols=35 Identities=29% Similarity=0.383 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 443 EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 477 (637)
Q Consensus 443 E~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~l 477 (637)
+.++..+..++.++..|+.++..++.++..++..+
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555444
No 239
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=54.90 E-value=4.7e+02 Score=31.79 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006637 368 QLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH 423 (637)
Q Consensus 368 aREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~ 423 (637)
--.+++.+-...+.-+++..||.......++..+...+...+.++.....+++...
T Consensus 151 ~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~ 206 (716)
T KOG4593|consen 151 DKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEEN 206 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555566677777777776666666666666555555555555555443
No 240
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=54.78 E-value=39 Score=35.33 Aligned_cols=12 Identities=58% Similarity=0.628 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHH
Q 006637 291 EKILAEKAAAKA 302 (637)
Q Consensus 291 ~~~~ae~~a~kA 302 (637)
+||..||+..++
T Consensus 156 ekIKkER~ee~~ 167 (244)
T PF04889_consen 156 EKIKKERAEEKA 167 (244)
T ss_pred HHHHHHHHHHHH
Confidence 456666655443
No 241
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=54.74 E-value=2.3e+02 Score=28.20 Aligned_cols=55 Identities=35% Similarity=0.380 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006637 365 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRN 419 (637)
Q Consensus 365 qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL 419 (637)
+|+.|...++.....|...+..+...++.....+..|+.++..++.....|..+.
T Consensus 88 ~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 88 EALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666555555555555555555555555443
No 242
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=54.62 E-value=3.7e+02 Score=31.87 Aligned_cols=42 Identities=24% Similarity=0.066 Sum_probs=21.4
Q ss_pred hhhhhhhhhhHHHHHHHHHHhhchhhHHHHH-----HHHHHHHHHHHH
Q 006637 566 HIGSLLKQLDSIFLAGVVFLRRNPIAKLWSL-----VYLVCLHLWVIY 608 (637)
Q Consensus 566 ~v~sal~~LD~~~lrlgrfLrR~P~ARllfi-----iYlllLHLwVf~ 608 (637)
+....++|=-.+++|-- .=.+.-.||+.++ +|---|+----.
T Consensus 563 ~~~~LLsp~Q~~~lreN-lrl~L~~A~lAll~~~~~~y~~~L~~a~~w 609 (656)
T PRK06975 563 ADAMLLSPDQGYFLREN-LKLRLLNARLSLLSRNDAAFKSDLHAAQAA 609 (656)
T ss_pred CcccCCChhHHHHHHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 44445666666666652 2222455555554 455555544433
No 243
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=54.56 E-value=2.3e+02 Score=28.17 Aligned_cols=99 Identities=24% Similarity=0.278 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhh--HhHHHHhhchHHHHHHHHH
Q 006637 370 LAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIY--LKRLAASKGVEFEREILEA 447 (637)
Q Consensus 370 Ea~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~s--a~Ql~a~~~~EaElE~~e~ 447 (637)
...|+....++-++++.+...+.....++....+.+. .....|..+--.+.+ +..+.+... =+..+..
T Consensus 17 ~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~-------~~~~ri~~m~~gg~~f~i~~~~~~~~---~r~~l~~ 86 (158)
T PF09486_consen 17 ERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLR-------AHDARIDAMMTGGAPFSIDEYLALRR---YRDVLEE 86 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHcCCCCccHHHHHHHHH---HHHHHHH
Confidence 4455555555555555555555555554444444433 333333333211111 111111111 1122334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 006637 448 EYTFIADKIIQLEDKAKKLEGNIEMTRKEIE 478 (637)
Q Consensus 448 Els~Le~el~~Le~klqk~E~EIe~LR~~ls 478 (637)
++..+++++..++..+....++|..++..+.
T Consensus 87 ~~~~~e~~~a~l~~~l~~~~~~ia~~~raIa 117 (158)
T PF09486_consen 87 RVRAAEAELAALRQALRAAEDEIAATRRAIA 117 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555553
No 244
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=54.44 E-value=4.9e+02 Score=31.90 Aligned_cols=89 Identities=27% Similarity=0.302 Sum_probs=48.8
Q ss_pred HHHHHHHHhHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 006637 295 AEKAAAKAGDAIKERENMVA----RLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLL 370 (637)
Q Consensus 295 ae~~a~kA~~~i~eRe~~va----~Le~Ek~~leklleEr~~qQ~~easelq~~mlaS~aALelEk~aHsaTR~qAlaRE 370 (637)
-|+.|.++.+++..|+..+. .|+..-..+|+-|++|+ ++-.-++++|++.++...|.. ...-.|+
T Consensus 496 rErrAsE~eas~r~R~~ALEara~ALeERAr~~e~~L~~Re-----~a~a~Re~TLAahEaa~AE~E------~aLRLRE 564 (828)
T PF04094_consen 496 RERRASEAEASLRAREEALEARAKALEERARAAERSLEERE-----RAAAQREATLAAHEAAAAEEE------SALRLRE 564 (828)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-----HHHHHHHHHHHHHHHHHHhHH------HHHHHHH
Confidence 36777788888888876644 23333333444444443 233334556776665543321 1223566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 371 AKLETANADLARALAAAQKKLEME 394 (637)
Q Consensus 371 a~LE~enaeLAkALA~~QRkLeee 394 (637)
..|.+.++.+.++-+.++|..++.
T Consensus 565 eA~aER~~~~~~aEaaa~Rlae~L 588 (828)
T PF04094_consen 565 EALAERDRALNRAEAAAQRLAEQL 588 (828)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666666666666666666655443
No 245
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=54.08 E-value=51 Score=34.38 Aligned_cols=52 Identities=17% Similarity=0.257 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 367 LQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 418 (637)
Q Consensus 367 laREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqe 418 (637)
..|...||.....-...+..+|+.|++.+.+|+.|+-+++.+..+++.++++
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~r 90 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 90 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3566666666666667778888888888888888888888888877777665
No 246
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=53.42 E-value=1.5e+02 Score=26.35 Aligned_cols=77 Identities=25% Similarity=0.295 Sum_probs=43.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 391 LEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNI 470 (637)
Q Consensus 391 Leee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~a~~~~EaElE~~e~Els~Le~el~~Le~klqk~E~EI 470 (637)
......++-+|-++...+..+.+.|+.+--... +++......-.+.+.+..+...+..++..++.++..++.++
T Consensus 24 ~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~s------k~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l 97 (108)
T PF02403_consen 24 DEEDVDEIIELDQERRELQQELEELRAERNELS------KEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEEL 97 (108)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH------HHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666666665522211 22222111112233356777778888888888888888766
Q ss_pred HHH
Q 006637 471 EMT 473 (637)
Q Consensus 471 e~L 473 (637)
..+
T Consensus 98 ~~~ 100 (108)
T PF02403_consen 98 NEL 100 (108)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 247
>PRK02793 phi X174 lysis protein; Provisional
Probab=53.24 E-value=95 Score=26.80 Aligned_cols=43 Identities=21% Similarity=0.155 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 006637 366 ALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELK 408 (637)
Q Consensus 366 AlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~L 408 (637)
..+|...||...+=....|...-..+-.....++.|..++..|
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666555555554444444444444444444444433
No 248
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=52.15 E-value=45 Score=34.89 Aligned_cols=7 Identities=57% Similarity=0.748 Sum_probs=2.6
Q ss_pred CCCCCCC
Q 006637 265 GSDSNSD 271 (637)
Q Consensus 265 ~~~~~~~ 271 (637)
+||+|+|
T Consensus 134 ~sd~~~d 140 (244)
T PF04889_consen 134 ESDDDSD 140 (244)
T ss_pred ccccccc
Confidence 3333333
No 249
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=51.94 E-value=2.1e+02 Score=27.01 Aligned_cols=46 Identities=28% Similarity=0.372 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 373 LETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 418 (637)
Q Consensus 373 LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqe 418 (637)
|++.+.+++.=|+..++.++....-..+|-.+-..|+.....|+++
T Consensus 7 l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q 52 (107)
T PF09304_consen 7 LEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQ 52 (107)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHH
Confidence 4444445555555555555555555555555555455555555444
No 250
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=51.66 E-value=4e+02 Score=31.39 Aligned_cols=68 Identities=16% Similarity=0.204 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 442 REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED-------PTEVEIELKRRLGQLTDHLIQKQAQVEALS 509 (637)
Q Consensus 442 lE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~-------pT~~q~ELE~RL~qLTE~LIqKQTQLEsLs 509 (637)
+.++..|...|...|..++.|++-..-|.+.+-.-+-- -+..+.||+.++..+...|-+-|..|-.|.
T Consensus 228 l~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 228 LSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455666666666666666665555554444433311 122346666777777777766666665543
No 251
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=51.61 E-value=2.6e+02 Score=27.84 Aligned_cols=19 Identities=21% Similarity=0.510 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 006637 459 LEDKAKKLEGNIEMTRKEI 477 (637)
Q Consensus 459 Le~klqk~E~EIe~LR~~l 477 (637)
+..+...++.++..++..+
T Consensus 84 l~~~~~~~e~~~a~l~~~l 102 (158)
T PF09486_consen 84 LEERVRAAEAELAALRQAL 102 (158)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 252
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=51.53 E-value=4.3e+02 Score=30.34 Aligned_cols=44 Identities=27% Similarity=0.321 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006637 372 KLETANADLARA---LAAAQKKLEMETNQVAELRQQTELKEVAHEEL 415 (637)
Q Consensus 372 ~LE~enaeLAkA---LA~~QRkLeee~~rvaELrqkve~LE~e~esL 415 (637)
++-+.+.+|++| |+..+...++...++.-|-.+..-++.+.++|
T Consensus 124 ~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl 170 (499)
T COG4372 124 ELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSL 170 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555554 34444444444445555555555555555554
No 253
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=51.19 E-value=2.5e+02 Score=27.55 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 006637 399 AELRQQTELKEVAHEELSQRNSNT 422 (637)
Q Consensus 399 aELrqkve~LE~e~esLRqeL~~a 422 (637)
.+++.........+.+||.+++..
T Consensus 47 ~d~e~~~~~~~a~~~eLr~el~~~ 70 (177)
T PF07798_consen 47 SDLENQEYLFKAAIAELRSELQNS 70 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666777777776543
No 254
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=50.72 E-value=3.7e+02 Score=29.42 Aligned_cols=65 Identities=23% Similarity=0.217 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006637 359 HNNTRMEALQLLAKLETANADLARALAAAQKKLEMETN-------QVAELRQQTELKEVAHEELSQRNSNTH 423 (637)
Q Consensus 359 HsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~-------rvaELrqkve~LE~e~esLRqeL~~a~ 423 (637)
|+..+|.|.+|-..|-+.---+..||.+.+..++.-.+ .-+.|..|++....+++-+++++...+
T Consensus 89 ~~~~~~~aa~Rplel~e~Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~Lq 160 (338)
T KOG3647|consen 89 HKESLMSAAQRPLELLEVEKVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQ 160 (338)
T ss_pred HHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677788888776666655566666555555554333 345777788877888887777766654
No 255
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=50.51 E-value=4.1e+02 Score=29.86 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=20.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 006637 314 ARLEGEKQSLEKILEERAKQQVKEASELQTSM 345 (637)
Q Consensus 314 a~Le~Ek~~leklleEr~~qQ~~easelq~~m 345 (637)
-++-+.-+.|-+|-|--++.|. |+.+||++.
T Consensus 78 rk~~e~~eglr~i~es~~e~q~-e~~qL~~qn 108 (401)
T PF06785_consen 78 RKITEKDEGLRKIRESVEERQQ-ESEQLQSQN 108 (401)
T ss_pred HHHHhccHHHHHHHHHHHHHHH-HHHHHHHhH
Confidence 3444455667777766666665 888888764
No 256
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=50.32 E-value=6.5e+02 Score=32.13 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006637 337 EASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADL 380 (637)
Q Consensus 337 easelq~~mlaS~aALelEk~aHsaTR~qAlaREa~LE~enaeL 380 (637)
+...++..|=.-+..+..-+..|...+.+.+.....+-..+..+
T Consensus 242 ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l 285 (1141)
T KOG0018|consen 242 EIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKL 285 (1141)
T ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444455444445455555555444444333333
No 257
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.26 E-value=4.6e+02 Score=30.31 Aligned_cols=160 Identities=24% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHH--HHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHH
Q 006637 294 LAEKAAAKAGDAIKE--RENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQR-HNNTRMEALQLL 370 (637)
Q Consensus 294 ~ae~~a~kA~~~i~e--Re~~va~Le~Ek~~leklleEr~~qQ~~easelq~~mlaS~aALelEk~a-HsaTR~qAlaRE 370 (637)
+||--.-||+++..| ..++|+--...-+. +...||-.|..+....+-+... .---|.+-+.-+
T Consensus 51 ~aeme~ikaia~vsE~tk~EaV~av~rq~~e--------------eVaSlqa~~k~~~~~ye~q~~~~leqertq~qq~~ 116 (542)
T KOG0993|consen 51 QAEMENIKAIATVSEPTKSEAVSAVVRQEEE--------------EVASLQASQKSPNPTYECQMCQNLEQERTQLQQNE 116 (542)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHhhcc--------------ccchhHHHhcCCCccHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHHHhhchHHHHHHHHHH
Q 006637 371 AKLETANADLARALAA--AQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAE 448 (637)
Q Consensus 371 a~LE~enaeLAkALA~--~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~a~~~~EaElE~~e~E 448 (637)
.+++.+..++-.-|++ .+-+|+-+...+-+...|+ +.=
T Consensus 117 e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKl----------------------------------------rel 156 (542)
T KOG0993|consen 117 EKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKL----------------------------------------REL 156 (542)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHH----------------------------------------HHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 449 YTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAV 522 (637)
Q Consensus 449 ls~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERl 522 (637)
.--|+.+|..|.+++.+-++-|+.+.+...++.+ -||-.|+.|- |+.++..-..+||.+
T Consensus 157 v~pmekeI~elk~kl~~aE~~i~El~k~~~h~a~-------slh~~t~lL~--------L~RD~s~~l~~leel 215 (542)
T KOG0993|consen 157 VTPMEKEINELKKKLAKAEQRIDELSKAKHHKAE-------SLHVFTDLLN--------LARDKSEQLRQLEEL 215 (542)
T ss_pred HhhHHHHHHHHHHHHHhHHHHHHHHHhhhcccch-------HHHHHHHHHH--------HhcCCchhhhHHHHh
No 258
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=49.92 E-value=3.8e+02 Score=32.19 Aligned_cols=39 Identities=23% Similarity=0.396 Sum_probs=26.8
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhcCCCCcccCccccchhhc
Q 006637 580 AGVVFLRRNPIAKLWSLVYLVCLHLWVIYILLSHSQSSAEARSGAVFSLEN 630 (637)
Q Consensus 580 rlgrfLrR~P~ARllfiiYlllLHLwVf~vL~~~s~~ss~grsgA~~slen 630 (637)
.-.+|-.-+|+.+.++=.|-|| +|.|+.. +||-||+.+.
T Consensus 374 Q~~VF~e~~~lv~S~lDGYnVC--------IFAYGQT----GSGKTyTM~G 412 (670)
T KOG0239|consen 374 QDDVFEEVSPLVQSALDGYNVC--------IFAYGQT----GSGKTYTMSG 412 (670)
T ss_pred HHHHHHHHHHHHHHHhcCccee--------EEEeccc----CCCccccccC
Confidence 3456666689999998899888 5666665 5555555443
No 259
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=49.09 E-value=3.6e+02 Score=29.90 Aligned_cols=120 Identities=18% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhcchhhHhHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 006637 379 DLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR-NSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKII 457 (637)
Q Consensus 379 eLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqe-L~~a~Q~~~sa~Ql~a~~~~EaElE~~e~Els~Le~el~ 457 (637)
.|..+|+.++.++......+..|+.++...+...+..+-. +..+........++....-.-.|.
T Consensus 88 ~y~~al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~~R~~~L~~~g~vs~~~--------------- 152 (352)
T COG1566 88 DYRAALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNELERRAELAQRGVVSREE--------------- 152 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHH---------------
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 458 QLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEA 521 (637)
Q Consensus 458 ~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLER 521 (637)
+......++..+.++.. ........+..|......+|.++.++......-.+.|++
T Consensus 153 -----~~~a~~a~~~A~A~~~~---a~~~~~~~~~~l~~~~~~~~~~v~~a~a~~~~A~l~L~~ 208 (352)
T COG1566 153 -----LDRARAALQAAEAALAA---AQAAQKQNLALLESEVSGAQAQVASAEAALDQAKLDLER 208 (352)
T ss_pred -----HHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHhhC
No 260
>PRK02119 hypothetical protein; Provisional
Probab=49.08 E-value=49 Score=28.66 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 489 RRLGQLTDHLIQKQAQVEALSSEKATLAFRI 519 (637)
Q Consensus 489 ~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQL 519 (637)
.-|..|-+.++.=|.+|+.|......|.-||
T Consensus 23 ~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 23 NLLEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777778877777766666444
No 261
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=48.84 E-value=64 Score=34.74 Aligned_cols=55 Identities=20% Similarity=0.211 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHHH
Q 006637 380 LARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAA 434 (637)
Q Consensus 380 LAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~a 434 (637)
..+.|..++..|.....+++.|+.+......+...|..++..+..+...+..++.
T Consensus 233 ~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~ 287 (344)
T PF12777_consen 233 AEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLIS 287 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHh
Confidence 3334444444555555555555555544444455555555444444445555543
No 262
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=48.82 E-value=2.4e+02 Score=35.48 Aligned_cols=17 Identities=12% Similarity=0.319 Sum_probs=7.8
Q ss_pred hhhhhHHHHHHHHHHhhch
Q 006637 571 LKQLDSIFLAGVVFLRRNP 589 (637)
Q Consensus 571 l~~LD~~~lrlgrfLrR~P 589 (637)
-..+|+--+. -+|..+|
T Consensus 691 ~~~~~~~~~~--~~~~~~~ 707 (1021)
T PTZ00266 691 QDTFDRNDMH--GYMKNSP 707 (1021)
T ss_pred ccccchhhhh--HHhhcCC
Confidence 3455555433 2444444
No 263
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=48.73 E-value=3.5e+02 Score=28.99 Aligned_cols=27 Identities=22% Similarity=0.181 Sum_probs=15.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006637 393 METNQVAELRQQTELKEVAHEELSQRN 419 (637)
Q Consensus 393 ee~~rvaELrqkve~LE~e~esLRqeL 419 (637)
+-.....+++.++..+..+-++|..++
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~el 158 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKEL 158 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666666666666555553
No 264
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=48.73 E-value=3.9e+02 Score=29.14 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 486 ELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRI 519 (637)
Q Consensus 486 ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQL 519 (637)
+.-.++..+|+.|-..|.+++.+..-.+...-.|
T Consensus 131 ~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l 164 (301)
T PF06120_consen 131 DATRKLAEATRELAVAQERLEQMQSKASETQATL 164 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555544444444333
No 265
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=48.67 E-value=1.5e+02 Score=34.19 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 446 EAEYTFIADKIIQLEDKAKKLEGNI 470 (637)
Q Consensus 446 e~Els~Le~el~~Le~klqk~E~EI 470 (637)
.+|.+.++.+++.++..+..++..+
T Consensus 115 ~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 115 TKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555554433
No 266
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=47.99 E-value=1.9e+02 Score=25.74 Aligned_cols=61 Identities=23% Similarity=0.275 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006637 362 TRMEALQLLAKLETANADLARALAAAQKK---LEMETNQVAELRQQTELKEVAHEELSQRNSNT 422 (637)
Q Consensus 362 TR~qAlaREa~LE~enaeLAkALA~~QRk---Leee~~rvaELrqkve~LE~e~esLRqeL~~a 422 (637)
.+.+++.....|.++--.+++.++...+. .+....++.++..++..++.++..+..++...
T Consensus 37 ~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 37 ERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888888888888888888874 77788888889888888888888887776654
No 267
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=47.55 E-value=5.7e+02 Score=30.64 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 443 EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAV 522 (637)
Q Consensus 443 E~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERl 522 (637)
-.+++.+..|.++.+.|+.-...+...+..|+ .-.++|..+-....+||.++-.|...+.+..-+|++.
T Consensus 361 ~~l~A~l~~L~se~q~L~~~~~~r~e~~~~Lq-----------~K~q~I~~frqlv~e~QeqIr~LiK~Nsaakt~L~q~ 429 (632)
T PF14817_consen 361 AGLKASLNALRSECQRLKEAAAERQEALRSLQ-----------AKWQRILDFRQLVSEKQEQIRALIKGNSAAKTQLEQS 429 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhC
Confidence 34555666666655555544444433222222 2347788888889999999999999999999999985
Q ss_pred H
Q 006637 523 S 523 (637)
Q Consensus 523 e 523 (637)
.
T Consensus 430 ~ 430 (632)
T PF14817_consen 430 P 430 (632)
T ss_pred h
Confidence 4
No 268
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=46.81 E-value=3.3e+02 Score=27.64 Aligned_cols=15 Identities=13% Similarity=0.286 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHh
Q 006637 345 MMETMDAFELEKQRH 359 (637)
Q Consensus 345 mlaS~aALelEk~aH 359 (637)
.++.+..++.+...|
T Consensus 108 ~~e~~k~le~~~~~~ 122 (190)
T PF05266_consen 108 LLEERKKLEKKIEEK 122 (190)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 269
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian). Lilliputian is a Drosophila AF4 protein homologue which contains an AT-hook domain. It represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila []. These proteins have been linked to Homo sapiens diseases such as acute lymphoblastic leukemia and mental retardation [].
Probab=46.60 E-value=14 Score=46.34 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=27.3
Q ss_pred chhhhhhhhhhHH--HHHHHHHHhhch-hhHHHHHHHHHHHHHHHHH
Q 006637 565 KHIGSLLKQLDSI--FLAGVVFLRRNP-IAKLWSLVYLVCLHLWVIY 608 (637)
Q Consensus 565 R~v~sal~~LD~~--~lrlgrfLrR~P-~ARllfiiYlllLHLwVf~ 608 (637)
-++++|++-||.+ ||..|.+|=+-| .+...|-+|-=-|-|+=|+
T Consensus 967 Dk~gKA~~YldAalsFiecG~AME~~~~~skS~yTMYseTveLIky~ 1013 (1191)
T PF05110_consen 967 DKFGKAVNYLDAALSFIECGNAMERDPLESKSPYTMYSETVELIKYI 1013 (1191)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcCCCccCCcchhHHHHHHHHHHH
Confidence 3678888888887 666677776666 4555555554444444333
No 270
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=46.53 E-value=1.4e+02 Score=34.81 Aligned_cols=72 Identities=14% Similarity=0.173 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 451 FIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAV 522 (637)
Q Consensus 451 ~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERl 522 (637)
.++.++..++.++.+++.+|..+...+..|..-...-..++..|.+.+-..+++||.+..+=-.|...||-+
T Consensus 560 ~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~ 631 (638)
T PRK10636 560 PLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQM 631 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666666666666667554321111123677888888888888888887777777655554
No 271
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=45.98 E-value=4.1e+02 Score=28.51 Aligned_cols=144 Identities=14% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHHHhhchH
Q 006637 360 NNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVE 439 (637)
Q Consensus 360 saTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~a~~~~E 439 (637)
..+-.+...++..|...|.+|.++|-.+...-....+..-.=.+.+.-.-..+....-. ....+.
T Consensus 5 r~sl~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~---------------~l~~ak 69 (258)
T PF15397_consen 5 RTSLQELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHK---------------QLQQAK 69 (258)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChH---------------HHHHHH
Q ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 440 FER----EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED----PTEVEIELKRRLGQLTDHLIQKQAQVEALSSE 511 (637)
Q Consensus 440 aEl----E~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~----pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSE 511 (637)
.|+ +..+.++..|+.++..|..++.+...|+.-|+-=..+ .+.-..+|...|.+|.+.- |..++.|..-
T Consensus 70 ~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~q---qdEldel~e~ 146 (258)
T PF15397_consen 70 AELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQ---QDELDELNEM 146 (258)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 006637 512 KATLAFRIEA 521 (637)
Q Consensus 512 K~AL~lQLER 521 (637)
...-.--|++
T Consensus 147 ~~~el~~l~~ 156 (258)
T PF15397_consen 147 RQMELASLSR 156 (258)
T ss_pred HHHHHHHHHH
No 272
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=45.81 E-value=5.4e+02 Score=29.86 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006637 364 MEALQLLAKLETANADLARALAAAQKKLEMETN 396 (637)
Q Consensus 364 ~qAlaREa~LE~enaeLAkALA~~QRkLeee~~ 396 (637)
.+...+...++.+++++...+...++..+++..
T Consensus 70 ~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~ 102 (475)
T PRK10361 70 RSLQSINTSLEADLREVTTRMEAAQQHADDKIR 102 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555544433
No 273
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=44.94 E-value=1.8e+02 Score=32.34 Aligned_cols=76 Identities=17% Similarity=0.260 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 446 EAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAV 522 (637)
Q Consensus 446 e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERl 522 (637)
..++..+.+++..++.++.+++..|..+...-..+. ...+....+..+...+.....+++.|..+...|.-+|++.
T Consensus 333 ~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~-~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 333 KEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGK-LPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555666666666666666677766666665332211 1135566667777777777777777777777777555554
No 274
>PF15456 Uds1: Up-regulated During Septation
Probab=44.91 E-value=2.8e+02 Score=26.40 Aligned_cols=39 Identities=18% Similarity=0.173 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006637 383 ALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSN 421 (637)
Q Consensus 383 ALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~ 421 (637)
|+..++.-=--...+|++|..++..|...++.+++.+..
T Consensus 9 Al~ds~~feiLs~eEVe~LKkEl~~L~~R~~~lr~kl~l 47 (124)
T PF15456_consen 9 ALGDSKEFEILSFEEVEELKKELRSLDSRLEYLRRKLAL 47 (124)
T ss_pred HHHHHHcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444333334468888888888888888888887764
No 275
>PRK04406 hypothetical protein; Provisional
Probab=44.63 E-value=1.9e+02 Score=25.29 Aligned_cols=36 Identities=11% Similarity=0.106 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 006637 366 ALQLLAKLETANADLARALAAAQKKLEMETNQVAEL 401 (637)
Q Consensus 366 AlaREa~LE~enaeLAkALA~~QRkLeee~~rvaEL 401 (637)
...|...||...+=....|...-..+-.....++.|
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L 44 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKM 44 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555554444444333333333333333333
No 276
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=44.59 E-value=6.5e+02 Score=30.46 Aligned_cols=29 Identities=34% Similarity=0.518 Sum_probs=15.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 480 PTEVEIELKRRLGQLTDHLIQKQAQVEAL 508 (637)
Q Consensus 480 pT~~q~ELE~RL~qLTE~LIqKQTQLEsL 508 (637)
.|.++.++-+-|..+.+.|=.=|+.|+.+
T Consensus 630 LS~AEr~~~~EL~~~~~~l~~l~~si~~l 658 (717)
T PF10168_consen 630 LSEAEREFKKELERMKDQLQDLKASIEQL 658 (717)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666653333334433
No 277
>PRK00295 hypothetical protein; Provisional
Probab=44.58 E-value=1.3e+02 Score=25.70 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006637 368 QLLAKLETANADLARAL 384 (637)
Q Consensus 368 aREa~LE~enaeLAkAL 384 (637)
+|...||...+=....|
T Consensus 5 ~Ri~~LE~kla~qE~ti 21 (68)
T PRK00295 5 ERVTELESRQAFQDDTI 21 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444333333
No 278
>PRK00736 hypothetical protein; Provisional
Probab=44.54 E-value=1.2e+02 Score=25.93 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 006637 375 TANADLARALAAAQKKLEMETNQVAEL 401 (637)
Q Consensus 375 ~enaeLAkALA~~QRkLeee~~rvaEL 401 (637)
..+.+|-.++++-|+.++....++..|
T Consensus 19 ~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 19 KTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444443333333333
No 279
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=44.38 E-value=4.9e+02 Score=28.95 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 451 FIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSS 510 (637)
Q Consensus 451 ~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsS 510 (637)
.+..++..++.+.+.++++++.++..+.... ..+.++..|...+=.+++..|.+..
T Consensus 339 ~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~----~~~~~l~~L~Re~~~~r~~ye~lL~ 394 (458)
T COG3206 339 SLPNELALLEQQEAALEKELAQLKGRLSKLP----KLQVQLRELEREAEAARSLYETLLQ 394 (458)
T ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHhhch----HhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444566666777777777777775533 3455555565555555555555543
No 280
>KOG1821 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.68 E-value=1.8e+02 Score=33.36 Aligned_cols=27 Identities=30% Similarity=0.500 Sum_probs=21.6
Q ss_pred cccccccccccccccccccCCCCCCCC
Q 006637 237 RGNHKSNAGIRASVLNDSKRGSSSTSE 263 (637)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (637)
|..|.-|.|..|+-.+|-++|++-+++
T Consensus 404 KkkhNanggfNSsPpndkakggsipkS 430 (662)
T KOG1821|consen 404 KKKHNANGGFNSSPPNDKAKGGSIPKS 430 (662)
T ss_pred hccccCCCCcCCCCCcccccCCCCCcc
Confidence 467788889999999999888776654
No 281
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=42.91 E-value=5.9e+02 Score=29.49 Aligned_cols=8 Identities=25% Similarity=0.252 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 006637 366 ALQLLAKL 373 (637)
Q Consensus 366 AlaREa~L 373 (637)
...||..|
T Consensus 78 L~qrE~rL 85 (514)
T TIGR03319 78 LQRLERRL 85 (514)
T ss_pred HHHHHHHH
Confidence 33344433
No 282
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=42.91 E-value=5.7e+02 Score=29.31 Aligned_cols=56 Identities=23% Similarity=0.148 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006637 366 ALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSN 421 (637)
Q Consensus 366 AlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~ 421 (637)
.+.-.++||.+.+++..-|+.++..+....-++..|+.++..|+.+++..+.++..
T Consensus 284 ~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~ 339 (434)
T PRK15178 284 IYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSN 339 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhc
Confidence 34556788888888888888888888888889999999999999999999988764
No 283
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=42.80 E-value=6.1e+02 Score=29.63 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=21.5
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHHccC
Q 006637 3 HWISNKLKVAETFLQQIDQQAAESLGK 29 (637)
Q Consensus 3 ~w~s~klk~~~~~~~q~dqq~~~sl~k 29 (637)
.|++.=--.||.+|.-.|+-|+..+-.
T Consensus 2 Sw~~d~aG~aE~llN~~d~ka~ta~~~ 28 (554)
T KOG4677|consen 2 SWMNDTAGDAEELLNSSDFKAFTADDE 28 (554)
T ss_pred chhhhccchHHHHHHhhhccccccccc
Confidence 377777778999999999988876643
No 284
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=42.03 E-value=2.7e+02 Score=25.30 Aligned_cols=50 Identities=16% Similarity=0.155 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHH
Q 006637 384 LAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLA 433 (637)
Q Consensus 384 LA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~ 433 (637)
+...+.-+......+....+.+..++..++..+..+..+++....+..+.
T Consensus 63 l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~lekL~ 112 (141)
T TIGR02473 63 LSNYQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELKALEKLK 112 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566667777777777777777777777765554444443
No 285
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=41.84 E-value=1.3e+02 Score=34.76 Aligned_cols=46 Identities=11% Similarity=0.217 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006637 374 ETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRN 419 (637)
Q Consensus 374 E~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL 419 (637)
|....+|++-|+..++.++.-.+....++++++.++.+...|+.++
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555445555555666666666666665555
No 286
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=41.72 E-value=3.3e+02 Score=29.77 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 006637 380 LARALAAAQKKLEMETNQVAELRQQTELK 408 (637)
Q Consensus 380 LAkALA~~QRkLeee~~rvaELrqkve~L 408 (637)
|-.=|-..++.|+++..+|.+|+.|+..|
T Consensus 73 LkakLkes~~~l~dRetEI~eLksQL~RM 101 (305)
T PF15290_consen 73 LKAKLKESENRLHDRETEIDELKSQLARM 101 (305)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33335566777788888888887777544
No 287
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=41.62 E-value=4.5e+02 Score=28.15 Aligned_cols=76 Identities=14% Similarity=0.139 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 445 LEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSR 524 (637)
Q Consensus 445 ~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERler 524 (637)
.+.++..++..+...+.++...+.+.++.+.-.+.-..++.+++. ....+...|.+++.+.+..+.+..+|+.++.
T Consensus 104 ~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 179 (370)
T PRK11578 104 VEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLDT----AATELAVKQAQIGTIDAQIKRNQASLDTAKT 179 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444333333333444443 3345556677888888888888877777653
No 288
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=41.28 E-value=7.5e+02 Score=30.27 Aligned_cols=68 Identities=19% Similarity=0.238 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 461 DKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDE 528 (637)
Q Consensus 461 ~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERlerl~ee 528 (637)
.++.-++..+.-||.+++..+-..-+|...=..|--.....=.++-.+-.-.+.|...++.+.+.+.+
T Consensus 587 kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE 654 (786)
T PF05483_consen 587 KQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEE 654 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34455666677777777766655566666666666666666677777888888999888888765444
No 289
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=40.98 E-value=5e+02 Score=31.47 Aligned_cols=138 Identities=17% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----cchhhHhHHH-HhhchHHHHHHHH
Q 006637 372 KLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH----QTGIYLKRLA-ASKGVEFEREILE 446 (637)
Q Consensus 372 ~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~----Q~~~sa~Ql~-a~~~~EaElE~~e 446 (637)
++|+..+-|+..-.-.+-.+...+.+|..-.+|+.-||.-++.-+.+|-..+ |+..+...+. +....-+|...++
T Consensus 108 ~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLK 187 (861)
T KOG1899|consen 108 EYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELK 187 (861)
T ss_pred HHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Q 006637 447 AEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELK---------RRLGQLTDHLIQKQAQVEALSS 510 (637)
Q Consensus 447 ~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE---------~RL~qLTE~LIqKQTQLEsLsS 510 (637)
--+..++.+--..++|++.-|..|+.++ ++.+--.++-.|. .-+..|-+++-.|-..++++..
T Consensus 188 LkltalEkeq~e~E~K~R~se~l~qevn-~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~ 259 (861)
T KOG1899|consen 188 LKLTALEKEQNETEKKLRLSENLMQEVN-QSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLR 259 (861)
T ss_pred HHHHHHHHHhhhHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHH
No 290
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=40.87 E-value=5.3e+02 Score=31.30 Aligned_cols=17 Identities=12% Similarity=0.050 Sum_probs=11.7
Q ss_pred HHhcCCCCcccCccccc
Q 006637 610 LLSHSQSSAEARSGAVF 626 (637)
Q Consensus 610 L~~~s~~ss~grsgA~~ 626 (637)
.-++.....+|.+|+|+
T Consensus 762 ~~f~~a~~~~GG~Gat~ 778 (782)
T PRK00409 762 KSFRDAPPNEGGFGVTI 778 (782)
T ss_pred eeeeecCcccCCCeEEE
Confidence 44455555788999986
No 291
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=40.12 E-value=5.9e+02 Score=29.44 Aligned_cols=108 Identities=19% Similarity=0.266 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHHHhhchHHHHHHHHHHHHHHHHH--HHHH
Q 006637 382 RALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADK--IIQL 459 (637)
Q Consensus 382 kALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~a~~~~EaElE~~e~Els~Le~e--l~~L 459 (637)
+.++..+-....+...+.+|+.=|..++++..=.+.+-.++..+.+.+.+++-++- +..++||...-.+ +...
T Consensus 336 k~~~e~~~~~~~kk~~~eeLESIVRiKqAEA~MFQ~kAdEARrEAE~LqrI~~aK~-----~k~EEEYas~~~kl~l~ea 410 (446)
T PF07227_consen 336 KEVAELQFERQRKKPQIEELESIVRIKQAEAKMFQLKADEARREAEGLQRIALAKS-----EKIEEEYASRYLKLRLNEA 410 (446)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHhhhhHHH
Confidence 44444444445555678888888888888877666666666555555555443332 2234566553333 3455
Q ss_pred HHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q 006637 460 EDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQL 494 (637)
Q Consensus 460 e~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qL 494 (637)
+.+-+.+=.||+.+.+.-..+-+...-++..|+.|
T Consensus 411 ee~r~~~~eelk~~e~s~~~~~~mk~rM~~~I~~L 445 (446)
T PF07227_consen 411 EEERKKKFEELKVLENSHRDYDNMKMRMQSEIQDL 445 (446)
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHhh
Confidence 55556666677777666655655555555555443
No 292
>PRK11519 tyrosine kinase; Provisional
Probab=39.83 E-value=7.2e+02 Score=29.61 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=18.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 387 AQKKLEMETNQVAELRQQTELKEVAHEELSQR 418 (637)
Q Consensus 387 ~QRkLeee~~rvaELrqkve~LE~e~esLRqe 418 (637)
+++.++.-..++.++++++...|..+.+.+++
T Consensus 265 a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~ 296 (719)
T PRK11519 265 ASKSLAFLAQQLPEVRSRLDVAENKLNAFRQD 296 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666666666655554
No 293
>PRK02119 hypothetical protein; Provisional
Probab=39.38 E-value=2.2e+02 Score=24.67 Aligned_cols=35 Identities=17% Similarity=0.130 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 006637 368 QLLAKLETANADLARALAAAQKKLEMETNQVAELR 402 (637)
Q Consensus 368 aREa~LE~enaeLAkALA~~QRkLeee~~rvaELr 402 (637)
.|...||...+=.+..|...-..+-.....++.|.
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~ 43 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQ 43 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555444444443333333333333333333
No 294
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=39.32 E-value=6.7e+02 Score=29.07 Aligned_cols=67 Identities=15% Similarity=0.199 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 457 IQLEDKAKKLEGNIEMTRKEIEDPTEV-------EIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVS 523 (637)
Q Consensus 457 ~~Le~klqk~E~EIe~LR~~ls~pT~~-------q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERle 523 (637)
..++.++..++..+..+...+.....+ ..++..++..+-..-..-+..+..|..+-...+-+|+++.
T Consensus 351 ~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~ 424 (569)
T PRK04778 351 RQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYR 424 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667776666666555432221 2344455555555556666677777776666666666654
No 295
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=39.16 E-value=1.9e+02 Score=24.50 Aligned_cols=49 Identities=22% Similarity=0.203 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006637 373 LETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSN 421 (637)
Q Consensus 373 LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~ 421 (637)
|+....+|+--||=.+.-+++...-|+....++..|+..+..|..++..
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444443
No 296
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=38.47 E-value=5.8e+02 Score=28.12 Aligned_cols=114 Identities=21% Similarity=0.200 Sum_probs=54.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 311 NMVARLEGEKQSLEKILEERAKQQV------KEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARAL 384 (637)
Q Consensus 311 ~~va~Le~Ek~~leklleEr~~qQ~------~easelq~~mlaS~aALelEk~aHsaTR~qAlaREa~LE~enaeLAkAL 384 (637)
-+-.+|+.||+.=|.+=.|-+.-.. ++.++.|++=-...-|+..++.-|-.-+.-+--=.+.|...|.-|..=|
T Consensus 74 ~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqL 153 (305)
T PF14915_consen 74 MLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQL 153 (305)
T ss_pred HHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHH
Confidence 3344666666664444333332222 2223333333333334444444332233333333456667777777777
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 006637 385 AAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQ 424 (637)
Q Consensus 385 A~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q 424 (637)
+.++.++.-...+.-..+.-+..+-..++..+++|.-++.
T Consensus 154 skaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~ 193 (305)
T PF14915_consen 154 SKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQC 193 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777665555444444444333444444444444443
No 297
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=38.33 E-value=2.4e+02 Score=23.58 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 006637 453 ADKIIQLEDKAKKLEGNIEMTRKEIEDP 480 (637)
Q Consensus 453 e~el~~Le~klqk~E~EIe~LR~~ls~p 480 (637)
..++..|+.++.+++.+|+.+..-|++|
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n~ 30 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSNE 30 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 4456677888888889999999888864
No 298
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=38.00 E-value=1.4e+02 Score=26.30 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 484 EIELKRRLGQLTDHLIQKQAQVEAL 508 (637)
Q Consensus 484 q~ELE~RL~qLTE~LIqKQTQLEsL 508 (637)
-.+|+..|..|...|=.|=.||-.|
T Consensus 52 R~~L~~~l~~lv~~mE~K~dQI~~L 76 (79)
T PF06657_consen 52 RRDLEQELEELVKRMEAKADQIYKL 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999999988888888766
No 299
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=37.80 E-value=4.1e+02 Score=26.20 Aligned_cols=50 Identities=10% Similarity=0.029 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHH
Q 006637 364 MEALQLLAKLETANADLARALAAAQKKLEMETNQ-VAELRQQTELKEVAHE 413 (637)
Q Consensus 364 ~qAlaREa~LE~enaeLAkALA~~QRkLeee~~r-vaELrqkve~LE~e~e 413 (637)
..-..++.-++....+..+.+..+++.++.+... +.+|+.++..+=+...
T Consensus 82 ~a~~~~~ea~~eA~~ea~r~~~~A~~~Ie~Ek~~Al~elr~eva~Lav~iA 132 (154)
T PRK06568 82 VTKKIIQEKTKEIEEFLEHKKSDAIQLIQNQKSTASKELQDEFCDEVIKLV 132 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455556666777777777777755544 3477777665555444
No 300
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=37.77 E-value=2.9e+02 Score=31.93 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006637 446 EAEYTFIADKIIQLEDK 462 (637)
Q Consensus 446 e~Els~Le~el~~Le~k 462 (637)
+.+++.+...+..|+.+
T Consensus 122 ~~~~~~~~~~l~~l~~~ 138 (472)
T TIGR03752 122 KSERQQLQGLIDQLQRR 138 (472)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444333
No 301
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=37.73 E-value=3.6e+02 Score=28.89 Aligned_cols=29 Identities=7% Similarity=0.266 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 449 YTFIADKIIQLEDKAKKLEGNIEMTRKEI 477 (637)
Q Consensus 449 ls~Le~el~~Le~klqk~E~EIe~LR~~l 477 (637)
+...+.++..++.++...+..++.++..+
T Consensus 153 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~l 181 (370)
T PRK11578 153 LAVKQAQIGTIDAQIKRNQASLDTAKTNL 181 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444333
No 302
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=37.56 E-value=8.4e+02 Score=29.76 Aligned_cols=68 Identities=13% Similarity=0.086 Sum_probs=30.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006637 356 KQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH 423 (637)
Q Consensus 356 k~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~ 423 (637)
++.-++++.-...+..+++...+++-.-+-.....+-..+.+|..+++.+..+.-.+..+.-++...+
T Consensus 132 ~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~ 199 (716)
T KOG4593|consen 132 RNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQH 199 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444444444444444444433
No 303
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=37.55 E-value=3.8e+02 Score=26.89 Aligned_cols=63 Identities=25% Similarity=0.331 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 445 LEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEAL 508 (637)
Q Consensus 445 ~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsL 508 (637)
++..+..++.++..++.++..++.+|+.++..- ..|..-..+-.++..|...+-+-+.+++..
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r-~~~~eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEAKKGR-EESEEREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777777777777777777774433 334444556666677766666666666633
No 304
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=37.48 E-value=5.6e+02 Score=27.71 Aligned_cols=88 Identities=26% Similarity=0.359 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 006637 286 RRKLKEKILAEKAAAKAGDAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRME 365 (637)
Q Consensus 286 ~r~~~~~~~ae~~a~kA~~~i~eRe~~va~Le~Ek~~leklleEr~~qQ~~easelq~~mlaS~aALelEk~aHsaTR~q 365 (637)
|.+.-+-.-|.........+..+++.+-..|+..+++||.++++.++.++ +..+++..+ ++
T Consensus 172 R~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Ek-e~~e~~~~i------------------~e 232 (269)
T PF05278_consen 172 RSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEK-EVKEIKERI------------------TE 232 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH------------------HH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 366 ALQLLAKLETANADLARALAAAQKKLE 392 (637)
Q Consensus 366 AlaREa~LE~enaeLAkALA~~QRkLe 392 (637)
.-.|++.|+.+-..+.+-+.-++-+++
T Consensus 233 ~~~rl~~l~~~~~~l~k~~~~~~sKV~ 259 (269)
T PF05278_consen 233 MKGRLGELEMESTRLSKTIKSIKSKVE 259 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 305
>PF13166 AAA_13: AAA domain
Probab=37.33 E-value=7.2e+02 Score=28.89 Aligned_cols=30 Identities=13% Similarity=0.357 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 486 ELKRRLGQLTDHLIQKQAQVEALSSEKATL 515 (637)
Q Consensus 486 ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL 515 (637)
.++..+..|...+..-+..++.+..+...+
T Consensus 442 ~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 442 KIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 444445555555443344444444444433
No 306
>KOG4074 consensus Leucine zipper nuclear factor [Function unknown]
Probab=37.06 E-value=1.1e+02 Score=33.81 Aligned_cols=55 Identities=42% Similarity=0.617 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 465 KLEGNIEMTRKEIEDPTEVEIELKRRL-GQLTDHLIQKQAQVEALSSEKATLAFRIEAV 522 (637)
Q Consensus 465 k~E~EIe~LR~~ls~pT~~q~ELE~RL-~qLTE~LIqKQTQLEsLsSEK~AL~lQLERl 522 (637)
++++|.+-+++++.--|....||.+=| .++.|-| |+++|.|+.||..|..+++..
T Consensus 141 ~l~~e~~~l~~ql~iqt~vNsELK~LlVASvgddL---Q~~ve~LtedK~qLa~~~~~~ 196 (383)
T KOG4074|consen 141 ELERELDLLRKQLNIQTKVNSELKRLLVASVGDDL---QGQVEALTEDKVQLAHRVDEY 196 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888876666777887655 6777776 899999999999999888774
No 307
>KOG3457 consensus Sec61 protein translocation complex, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=36.97 E-value=25 Score=31.88 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 006637 593 LWSLVYLVCLHLWVIY 608 (637)
Q Consensus 593 llfiiYlllLHLwVf~ 608 (637)
+.||+.+++||+|-=|
T Consensus 68 vgFIasV~~LHi~gK~ 83 (88)
T KOG3457|consen 68 VGFIASVFALHIWGKL 83 (88)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5799999999999644
No 308
>PRK00846 hypothetical protein; Provisional
Probab=36.95 E-value=2.9e+02 Score=24.63 Aligned_cols=51 Identities=16% Similarity=0.134 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006637 372 KLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT 422 (637)
Q Consensus 372 ~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a 422 (637)
.++....+|+--||=.+.-+++...-++...+.+..|..++.-|..+|..+
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333444444444444444444444444444444444444444444443
No 309
>PRK01203 prefoldin subunit alpha; Provisional
Probab=36.86 E-value=4e+02 Score=25.83 Aligned_cols=80 Identities=18% Similarity=0.205 Sum_probs=53.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CC-------------------C---------------
Q 006637 437 GVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI--ED-------------------P--------------- 480 (637)
Q Consensus 437 ~~EaElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~l--s~-------------------p--------------- 480 (637)
.+++|+..++++++.+.+++..|+.-..+...-|+.+...- +. |
T Consensus 4 ~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~VEK 83 (130)
T PRK01203 4 DVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYIAE 83 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEEEe
Confidence 34555666677777777777766666666666666665421 00 0
Q ss_pred ch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 481 TE--VEIELKRRLGQLTDHLIQKQAQVEALSSEKATLA 516 (637)
Q Consensus 481 T~--~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~ 516 (637)
+. .-..|..++..|...+..|+.+++++..-.+.|.
T Consensus 84 ~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~ 121 (130)
T PRK01203 84 ERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY 121 (130)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 1255678888888999999999998888877776
No 310
>PRK04325 hypothetical protein; Provisional
Probab=36.61 E-value=2.6e+02 Score=24.27 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Q 006637 376 ANADLARALAAAQKKLEMETNQVAE 400 (637)
Q Consensus 376 enaeLAkALA~~QRkLeee~~rvaE 400 (637)
.+.+|-.+++.-|+.++....++..
T Consensus 24 tIe~LN~vv~~Qq~~I~~L~~ql~~ 48 (74)
T PRK04325 24 LIDGLNATVARQQQTLDLLQAQLRL 48 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333333333
No 311
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=36.39 E-value=2.7e+02 Score=23.73 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 346 METMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEME 394 (637)
Q Consensus 346 laS~aALelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee 394 (637)
+.+-.++..|+..-..+=..+..|+..-+..|.+|..-|.+.+..+++-
T Consensus 10 irakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 10 IRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455667788877777777777788888888888888877777776653
No 312
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=36.27 E-value=3.5e+02 Score=28.34 Aligned_cols=57 Identities=23% Similarity=0.289 Sum_probs=46.6
Q ss_pred HHHHHHHHHhCCCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 468 GNIEMTRKEIEDPTE---VEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSR 524 (637)
Q Consensus 468 ~EIe~LR~~ls~pT~---~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERler 524 (637)
.+.+.++..+..++. ....+...+..|-+.|=.|++.||.+..++-+|..|.|.+.+
T Consensus 134 ~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~ 193 (216)
T KOG1962|consen 134 KENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQD 193 (216)
T ss_pred HHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 377788888877653 235667788899999999999999999999999999999753
No 313
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.07 E-value=2.6e+02 Score=24.83 Aligned_cols=42 Identities=19% Similarity=0.151 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 006637 364 MEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQT 405 (637)
Q Consensus 364 ~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkv 405 (637)
+++.+|..+||...|-=++.|...--.+-+...-++.++.++
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~ql 45 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQL 45 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888887776666655444444444333333333333
No 314
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=35.76 E-value=5.2e+02 Score=26.75 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 006637 452 IADKIIQLEDKAKKLEGNIEMTRKEIED 479 (637)
Q Consensus 452 Le~el~~Le~klqk~E~EIe~LR~~ls~ 479 (637)
+.+++..|+..|++.+-.++-|..++.+
T Consensus 159 ~~~e~~aLqa~lkk~e~~~~SLe~~LeQ 186 (207)
T PF05010_consen 159 HQAELLALQASLKKEEMKVQSLEESLEQ 186 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555554444444444433
No 315
>PTZ00491 major vault protein; Provisional
Probab=35.74 E-value=9.7e+02 Score=29.91 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006637 493 QLTDHLIQKQAQVEALSSEK 512 (637)
Q Consensus 493 qLTE~LIqKQTQLEsLsSEK 512 (637)
++-+.=|.|+.+|..+.++|
T Consensus 770 ~~~~le~~k~~~la~ie~~k 789 (850)
T PTZ00491 770 AQNELEIAKAKELADIEATK 789 (850)
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 34444466666666655554
No 316
>PRK01156 chromosome segregation protein; Provisional
Probab=35.73 E-value=8.6e+02 Score=29.33 Aligned_cols=13 Identities=15% Similarity=0.309 Sum_probs=6.7
Q ss_pred CCcccccccccCc
Q 006637 72 SDPNVKNVYNRNN 84 (637)
Q Consensus 72 ~~~~~~~~~~~~~ 84 (637)
-+|.++-++..||
T Consensus 21 f~~gi~~I~G~NG 33 (895)
T PRK01156 21 FDTGINIITGKNG 33 (895)
T ss_pred cCCCeEEEECCCC
Confidence 3455555555554
No 317
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=35.70 E-value=4.6e+02 Score=27.50 Aligned_cols=36 Identities=33% Similarity=0.362 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 006637 370 LAKLETANADLARALAAAQKKLEMETNQVAELRQQT 405 (637)
Q Consensus 370 Ea~LE~enaeLAkALA~~QRkLeee~~rvaELrqkv 405 (637)
..+|+.+.......|..+|.+......+...+..+.
T Consensus 160 ~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~Ey 195 (216)
T KOG1962|consen 160 LEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEY 195 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 334444444444444444433333333333333333
No 318
>PLN02939 transferase, transferring glycosyl groups
Probab=35.65 E-value=1e+03 Score=30.16 Aligned_cols=14 Identities=29% Similarity=0.254 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHhh
Q 006637 406 ELKEVAHEELSQRN 419 (637)
Q Consensus 406 e~LE~e~esLRqeL 419 (637)
+.++.+++.|+.+|
T Consensus 197 ~~~~~~~~~~~~~~ 210 (977)
T PLN02939 197 EILEEQLEKLRNEL 210 (977)
T ss_pred hhhHHHHHHHhhhh
Confidence 33444444444443
No 319
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=35.59 E-value=6.8e+02 Score=28.11 Aligned_cols=53 Identities=11% Similarity=0.161 Sum_probs=26.0
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCchh--HHHHHHHHHHHHHHHH
Q 006637 447 AEYTFIADKII-QLEDKAKKLEGNIEMTRKEIEDPTEV--EIELKRRLGQLTDHLI 499 (637)
Q Consensus 447 ~Els~Le~el~-~Le~klqk~E~EIe~LR~~ls~pT~~--q~ELE~RL~qLTE~LI 499 (637)
+.+..+...+. .++..+...+..++.+...+..-+|. ......+|..++..|.
T Consensus 307 qrLd~L~~RL~~a~~~~L~~k~~rL~~L~~rL~aLSPl~~~~~~~~~l~~~~~~l~ 362 (432)
T TIGR00237 307 LQFEKLEKRKQAALNKQLERTRQKKTRLTKRLTQTNPSPQILRAQTRTEQLNRRLN 362 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 33444444442 34445555666666666666554442 2233445555555554
No 320
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=35.39 E-value=4.1e+02 Score=25.55 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 443 EILEAEYTFIADKIIQLEDKAKKLE 467 (637)
Q Consensus 443 E~~e~Els~Le~el~~Le~klqk~E 467 (637)
+.+..++..+.+-+..|+.++..++
T Consensus 99 ~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 99 SQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556666666666666665554
No 321
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=35.39 E-value=3.7e+02 Score=24.94 Aligned_cols=80 Identities=25% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHh----------HHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 006637 287 RKLKEKILAEKAAAKAG----------DAIKEREN--MVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFEL 354 (637)
Q Consensus 287 r~~~~~~~ae~~a~kA~----------~~i~eRe~--~va~Le~Ek~~leklleEr~~qQ~~easelq~~mlaS~aALel 354 (637)
...|+.+-+++.+..++ +++.--+. |+.||++||+.
T Consensus 2 ~~Lr~~v~~er~~~~~L~~ELEeER~AaAsAA~EAMaMI~RLQ~EKAa-------------------------------- 49 (94)
T PF04576_consen 2 ERLRRAVEAERKALAALYAELEEERSAAASAASEAMAMILRLQEEKAA-------------------------------- 49 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--------------------------------
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 006637 355 EKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQT 405 (637)
Q Consensus 355 Ek~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkv 405 (637)
..|+|..=.--.++...=-..+|...++-+-.+...+..|+.++
T Consensus 50 -------~~mEA~Qy~Rm~EEk~~yD~e~ie~L~~~l~~rE~e~~~Le~el 93 (94)
T PF04576_consen 50 -------VEMEARQYQRMAEEKAEYDQEAIESLKDILYKREKEIQSLEAEL 93 (94)
T ss_pred -------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhc
No 322
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=34.57 E-value=4.1e+02 Score=28.03 Aligned_cols=36 Identities=11% Similarity=0.229 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 442 REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 477 (637)
Q Consensus 442 lE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~l 477 (637)
++++++-...|++++..++..+..++.||+.|+.+.
T Consensus 88 RDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN 123 (248)
T PF08172_consen 88 RDRFRQRNAELEEELRKQQQTISSLRREVESLRADN 123 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777777777777664
No 323
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=34.55 E-value=7.8e+02 Score=28.51 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhCC
Q 006637 461 DKAKKLEGNIEMTRKEIED 479 (637)
Q Consensus 461 ~klqk~E~EIe~LR~~ls~ 479 (637)
.-......+|..+...++.
T Consensus 448 ~~~~~~~~~i~~l~~~L~~ 466 (569)
T PRK04778 448 EMFFEVSDEIEALAEELEE 466 (569)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 4455667777777777766
No 324
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=34.46 E-value=5.1e+02 Score=26.32 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q 006637 306 IKERENMVARLEGEKQSLEKIL 327 (637)
Q Consensus 306 i~eRe~~va~Le~Ek~~lekll 327 (637)
+..|..=+..|.++...|..-+
T Consensus 7 lSar~~ki~~L~n~l~elq~~l 28 (194)
T PF15619_consen 7 LSARLHKIKELQNELAELQRKL 28 (194)
T ss_pred HHhhHHHHHHHHHHHHHHHHHH
Confidence 3444444556666666655444
No 325
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=34.40 E-value=3.5e+02 Score=24.43 Aligned_cols=66 Identities=20% Similarity=0.276 Sum_probs=34.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 385 AAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAK 464 (637)
Q Consensus 385 A~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~a~~~~EaElE~~e~Els~Le~el~~Le~klq 464 (637)
...+-+++.-...++.|+.+++.|...-..|.++.+.+. .-++.+.+|...++++...++.+++
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~----------------~~r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQ----------------HQREELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555566666666555555555555533321 0112235556666666666666655
Q ss_pred HH
Q 006637 465 KL 466 (637)
Q Consensus 465 k~ 466 (637)
.+
T Consensus 71 ~L 72 (79)
T PRK15422 71 AL 72 (79)
T ss_pred HH
Confidence 43
No 326
>PF06991 Prp19_bind: Splicing factor, Prp19-binding domain; InterPro: IPR009730 This entry represents the C terminus (approximately 300 residues) of eukaryotic micro-fibrillar-associated protein 1, which is a component of elastin-associated microfibrils in the extracellular matrix [].
Probab=34.10 E-value=3.3e+02 Score=29.22 Aligned_cols=10 Identities=20% Similarity=0.657 Sum_probs=5.6
Q ss_pred HHHHHhCCCc
Q 006637 472 MTRKEIEDPT 481 (637)
Q Consensus 472 ~LR~~ls~pT 481 (637)
.+++..+.||
T Consensus 196 i~~RD~~~~t 205 (276)
T PF06991_consen 196 IYKRDFSAPT 205 (276)
T ss_pred Hhhccccccc
Confidence 3455666665
No 327
>PF14182 YgaB: YgaB-like protein
Probab=33.95 E-value=3.6e+02 Score=24.39 Aligned_cols=42 Identities=19% Similarity=0.223 Sum_probs=26.3
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh
Q 006637 432 LAASKGVEFEREILEAEYTFIADKIIQL--EDKAKKLEGNIEMTRKEI 477 (637)
Q Consensus 432 l~a~~~~EaElE~~e~Els~Le~el~~L--e~klqk~E~EIe~LR~~l 477 (637)
++.+.-.+.|+++|. .++.++..+ +++|..++.||..++.++
T Consensus 13 MD~LL~LQsElERCq----eIE~eL~~l~~ea~l~~i~~EI~~mkk~L 56 (79)
T PF14182_consen 13 MDKLLFLQSELERCQ----EIEKELKELEREAELHSIQEEISQMKKEL 56 (79)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 445555667777765 233333333 355778888888888888
No 328
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=33.84 E-value=6.9e+02 Score=27.66 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=26.6
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCch--hHHHHHHHHHHHHHHHH
Q 006637 447 AEYTFIADKI-IQLEDKAKKLEGNIEMTRKEIEDPTE--VEIELKRRLGQLTDHLI 499 (637)
Q Consensus 447 ~Els~Le~el-~~Le~klqk~E~EIe~LR~~ls~pT~--~q~ELE~RL~qLTE~LI 499 (637)
+.+..+...+ ..++..+...+..++.+...+...+| .-.....+|..|...|.
T Consensus 312 q~L~~l~~rL~~a~~~~L~~~~~~L~~l~~rL~~lsP~~~L~r~~qrL~~L~~rL~ 367 (438)
T PRK00286 312 QRLDRLQQRLQRALERRLRLAKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLR 367 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444 23445556666666666666655444 22333445555554443
No 329
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.53 E-value=1e+03 Score=29.63 Aligned_cols=103 Identities=18% Similarity=0.153 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 006637 289 LKEKILAEKAAAKAG-DAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEAL 367 (637)
Q Consensus 289 ~~~~~~ae~~a~kA~-~~i~eRe~~va~Le~Ek~~leklleEr~~qQ~~easelq~~mlaS~aALelEk~aHsaTR~qAl 367 (637)
+|++-++-+-++.|. .++.. .-++|.+|. +|-++.--.-+|+|--+++|..-.++-+|=+.|..+|.+-|.-.=
T Consensus 270 r~e~~~~S~~~~~A~k~aL~~---~~~~iK~E~--~~~~v~~~t~E~tQ~~~~ve~~~~e~~~A~~~~T~~~~~vk~~~G 344 (1104)
T COG4913 270 RREKAQQSKDHANALKKALPT---VGNRIKKEE--QETLVRQFTVEQTQAKSKVESAKIETDRAREMETLAHDNVKQIVG 344 (1104)
T ss_pred HHHHHHHhHHHHHHHHhhhhH---HHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345556666665555 22222 345565554 457887778899999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006637 368 QLLAKLETANADLARALAAAQKKLEMETN 396 (637)
Q Consensus 368 aREa~LE~enaeLAkALA~~QRkLeee~~ 396 (637)
+|.-.|-++...+.-+.+..+.+-.--+.
T Consensus 345 ~~~~~LsA~~E~~~~~r~~~~~~~~~~~a 373 (1104)
T COG4913 345 AQHGILSAKREGAVDKRRTISTARAGLDA 373 (1104)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 89888888888887776666665554443
No 330
>PF14851 FAM176: FAM176 family
Probab=33.27 E-value=67 Score=31.77 Aligned_cols=19 Identities=37% Similarity=0.550 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006637 278 ESEREREERRKLKEKILAE 296 (637)
Q Consensus 278 e~e~~r~~~r~~~~~~~ae 296 (637)
.+|-||.+|-.+|++|+.|
T Consensus 116 ae~~e~A~rlEeRe~iirE 134 (153)
T PF14851_consen 116 AEELERAQRLEERERIIRE 134 (153)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666655
No 331
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=33.17 E-value=1.7e+02 Score=27.22 Aligned_cols=41 Identities=29% Similarity=0.381 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 485 IELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRL 525 (637)
Q Consensus 485 ~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERlerl 525 (637)
.+||.+|..|.+.+-+=..++..|..|+++|++..+.+...
T Consensus 11 ~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~ 51 (107)
T PF06156_consen 11 DQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRER 51 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888877888888999999999888888643
No 332
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=33.14 E-value=9.8e+02 Score=29.23 Aligned_cols=22 Identities=41% Similarity=0.484 Sum_probs=14.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhH
Q 006637 313 VARLEGEKQSLEKILEERAKQQV 335 (637)
Q Consensus 313 va~Le~Ek~~leklleEr~~qQ~ 335 (637)
+..++++...+.+ +.|...+|.
T Consensus 205 ~~~~~~e~~~~~~-l~e~~~~~~ 226 (908)
T COG0419 205 LEALEEELKELKK-LEEIQEEQE 226 (908)
T ss_pred HHHHHHHHHHHHh-HHHHHHHHh
Confidence 7778888887766 655555443
No 333
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=32.97 E-value=2.7e+02 Score=27.32 Aligned_cols=32 Identities=28% Similarity=0.376 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 006637 447 AEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE 478 (637)
Q Consensus 447 ~Els~Le~el~~Le~klqk~E~EIe~LR~~ls 478 (637)
++......++..|..++.+.+.|++.|+.+.+
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSE 185 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555566666666667777766664
No 334
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=32.88 E-value=1.3e+02 Score=31.88 Aligned_cols=62 Identities=21% Similarity=0.216 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh--HHHHHHHHHHHHHHHHHH
Q 006637 440 FEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEV--EIELKRRLGQLTDHLIQK 501 (637)
Q Consensus 440 aElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~--q~ELE~RL~qLTE~LIqK 501 (637)
.-...+++.|..+..+|+.|+.++..-+++++.+......++.. +.+-.......|+-+|+|
T Consensus 180 eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~r 243 (259)
T PF08657_consen 180 EKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRR 243 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHH
Confidence 33445678888888888888888888888888776655444321 011112223467777755
No 335
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=32.39 E-value=7.8e+02 Score=27.81 Aligned_cols=15 Identities=40% Similarity=0.386 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 006637 456 IIQLEDKAKKLEGNI 470 (637)
Q Consensus 456 l~~Le~klqk~E~EI 470 (637)
|..|+.|++++--||
T Consensus 203 I~~LEsKVqDLm~Ei 217 (401)
T PF06785_consen 203 IGKLESKVQDLMYEI 217 (401)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555444444
No 336
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=32.39 E-value=5.6e+02 Score=26.14 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 449 YTFIADKIIQLEDKAKKLEGNIEMTRKEI 477 (637)
Q Consensus 449 ls~Le~el~~Le~klqk~E~EIe~LR~~l 477 (637)
+.....++..|..++.....+++.++...
T Consensus 146 LeaAk~Rve~L~~QL~~Ar~D~~~tk~aA 174 (188)
T PF05335_consen 146 LEAAKRRVEELQRQLQAARADYEKTKKAA 174 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555544
No 337
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=32.19 E-value=5.7e+02 Score=26.21 Aligned_cols=34 Identities=32% Similarity=0.358 Sum_probs=20.7
Q ss_pred HhHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHhH
Q 006637 302 AGDAIKERENMVARLEGEKQS----LEKILEERAKQQV 335 (637)
Q Consensus 302 A~~~i~eRe~~va~Le~Ek~~----leklleEr~~qQ~ 335 (637)
|-=++-||-.||.+|..=-.. +--|+.=|-.+|+
T Consensus 72 A~~T~~ERR~~~~~l~~y~~~~P~~vRPL~QlWRe~Q~ 109 (179)
T PF13942_consen 72 AEPTPAERRQMVDRLNSYSLQFPASVRPLLQLWREQQV 109 (179)
T ss_pred CCCCHHHHHHHHHHHHHhhhhcCHHHhHHHHHHHHhHH
Confidence 445788999999998765433 2334444444444
No 338
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=32.15 E-value=64 Score=26.64 Aligned_cols=30 Identities=27% Similarity=0.670 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHH--HHHhcCCCCcccCc
Q 006637 593 LWSLVYLVCLHLWVIY--ILLSHSQSSAEARS 622 (637)
Q Consensus 593 llfiiYlllLHLwVf~--vL~~~s~~ss~grs 622 (637)
+.|+++|+..-+|.++ |||..++.+.++|.
T Consensus 17 IC~Fl~~~~~F~~F~~Kqilfr~~~~snear~ 48 (54)
T PF06716_consen 17 ICLFLFCLVVFIWFVYKQILFRNNPQSNEARF 48 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCcchhhc
Confidence 4455566666666665 46666777666653
No 339
>PRK01156 chromosome segregation protein; Provisional
Probab=32.02 E-value=9.8e+02 Score=28.87 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhHHHHHH
Q 006637 309 RENMVARLEGEKQSLEK 325 (637)
Q Consensus 309 Re~~va~Le~Ek~~lek 325 (637)
+..++..+..+...+++
T Consensus 467 ~~e~i~~~~~~i~~l~~ 483 (895)
T PRK01156 467 SNHIINHYNEKKSRLEE 483 (895)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 340
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=31.57 E-value=6.6e+02 Score=27.37 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=14.6
Q ss_pred HhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 434 ASKGVEFEREILEAEYTFIADKIIQLEDKAKKLE 467 (637)
Q Consensus 434 a~~~~EaElE~~e~Els~Le~el~~Le~klqk~E 467 (637)
..++...|...+--++..|++++..++..+..++
T Consensus 99 ~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~ 132 (302)
T PF09738_consen 99 SNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQ 132 (302)
T ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444344444444444444444333333
No 341
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=31.17 E-value=9e+02 Score=28.15 Aligned_cols=84 Identities=19% Similarity=0.203 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHH--HHhHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHH
Q 006637 339 SELQTSMMETMDAFELEK--QRHNNTRME------ALQLLAKLETANADLARALAAAQK-KLEMETNQVAELRQQTELKE 409 (637)
Q Consensus 339 selq~~mlaS~aALelEk--~aHsaTR~q------AlaREa~LE~enaeLAkALA~~QR-kLeee~~rvaELrqkve~LE 409 (637)
+=.+++++.-..|+..|+ .+|.--+.+ .---..+|.++-+.|+--|...|- -..-..+.+.-|+-+...++
T Consensus 99 EfisntLlkkiqal~keketla~~Ye~eee~lTn~Lsrkl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq 178 (552)
T KOG2129|consen 99 EFISNTLLKKIQALFKEKETLATVYEVEEEFLTNPLSRKLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQ 178 (552)
T ss_pred HHHHHHHHHHHHHhhccccccchhhhhhhhhccCchhHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhh
Confidence 334566666666654433 334333333 111233444455555554444442 22223344555555555555
Q ss_pred HHHHHHHHhhhhh
Q 006637 410 VAHEELSQRNSNT 422 (637)
Q Consensus 410 ~e~esLRqeL~~a 422 (637)
..++.||++...+
T Consensus 179 ~~leQLRre~V~l 191 (552)
T KOG2129|consen 179 NTLEQLRREAVQL 191 (552)
T ss_pred hhHHHHHHHHHHH
Confidence 5666666655444
No 342
>PRK00846 hypothetical protein; Provisional
Probab=31.09 E-value=3.6e+02 Score=24.05 Aligned_cols=31 Identities=23% Similarity=0.201 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 006637 376 ANADLARALAAAQKKLEMETNQVAELRQQTE 406 (637)
Q Consensus 376 enaeLAkALA~~QRkLeee~~rvaELrqkve 406 (637)
.+.+|-.++++-|+.++..+.++..|.++++
T Consensus 28 tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~ 58 (77)
T PRK00846 28 ALTELSEALADARLTGARNAELIRHLLEDLG 58 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443
No 343
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=31.06 E-value=4.4e+02 Score=24.55 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006637 451 FIADKIIQLEDKAKKLEGNI 470 (637)
Q Consensus 451 ~Le~el~~Le~klqk~E~EI 470 (637)
+++.++..|+..+..++.+|
T Consensus 98 ~l~~~~~~l~~~~~~l~~~l 117 (140)
T PRK03947 98 ILDKRKEELEKALEKLEEAL 117 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 344
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=31.03 E-value=6.3e+02 Score=26.32 Aligned_cols=21 Identities=10% Similarity=0.121 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006637 503 AQVEALSSEKATLAFRIEAVS 523 (637)
Q Consensus 503 TQLEsLsSEK~AL~lQLERle 523 (637)
.+++....+...+.-+|+..+
T Consensus 179 ~~~~~~~~~~~~~~~~l~~a~ 199 (327)
T TIGR02971 179 TDVDLAQAEVKSALEAVQQAE 199 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555553
No 345
>PRK00295 hypothetical protein; Provisional
Probab=30.59 E-value=3.3e+02 Score=23.30 Aligned_cols=39 Identities=23% Similarity=0.163 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 006637 368 QLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTE 406 (637)
Q Consensus 368 aREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve 406 (637)
.|.+=+|..+.+|-+++++-|+.++....++..|.++++
T Consensus 12 ~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~ 50 (68)
T PRK00295 12 SRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQE 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555444444444444443
No 346
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=30.57 E-value=8.4e+02 Score=27.65 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=12.3
Q ss_pred HHHHHHHHHhhchhhHHHHHHHHHH
Q 006637 577 IFLAGVVFLRRNPIAKLWSLVYLVC 601 (637)
Q Consensus 577 ~~lrlgrfLrR~P~ARllfiiYlll 601 (637)
++..+..-|.++| .|+++.+.+++
T Consensus 360 t~~~~~~Pl~~tR-~r~~~t~~~v~ 383 (395)
T PF10267_consen 360 TVANCPLPLTRTR-LRTLTTLLLVG 383 (395)
T ss_pred HHhcCCcHHhhcc-HHHHHHHHHHH
Confidence 3334444455454 56666655555
No 347
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=30.36 E-value=3.6e+02 Score=28.97 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 446 EAEYTFIADKIIQLEDKAKKLEGNIE 471 (637)
Q Consensus 446 e~Els~Le~el~~Le~klqk~E~EIe 471 (637)
-+|.+.++.+++.|++++..++.|.+
T Consensus 220 ~ae~seLq~r~~~l~~~L~~L~~e~~ 245 (289)
T COG4985 220 VAEKSELQKRLAQLQTELDALRAELE 245 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34444555555555555555554443
No 348
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=29.80 E-value=4.7e+02 Score=24.48 Aligned_cols=69 Identities=10% Similarity=0.012 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHh
Q 006637 364 MEALQLLAKLETANADLARAL-------------AAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLK 430 (637)
Q Consensus 364 ~qAlaREa~LE~enaeLAkAL-------------A~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~ 430 (637)
.++..++..|+....+|...+ -..+.-+.-....+....+.+..++..++..++.+..+.++.....
T Consensus 33 ~~~~~~L~~L~~~~~~~~~~~~~~~~~g~~~~~l~~~~~fl~~L~~~i~~q~~~v~~~~~~ve~~r~~~~ea~~~~k~~e 112 (146)
T PRK07720 33 EQVAEKLYELLKQKEDLEQAKEEKLQSGLSIQEIRHYQQFVTNLERTIDHYQLLVMQAREQMNRKQQDLTEKNIEVKKYE 112 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555544444432 3344445555555666666666666666666666666655543333
Q ss_pred HH
Q 006637 431 RL 432 (637)
Q Consensus 431 Ql 432 (637)
-+
T Consensus 113 kL 114 (146)
T PRK07720 113 KM 114 (146)
T ss_pred HH
Confidence 33
No 349
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=29.79 E-value=7.8e+02 Score=27.03 Aligned_cols=15 Identities=40% Similarity=0.390 Sum_probs=11.3
Q ss_pred HHHHHHhHHHHHHHH
Q 006637 313 VARLEGEKQSLEKIL 327 (637)
Q Consensus 313 va~Le~Ek~~lekll 327 (637)
|+-|+.-...||++|
T Consensus 211 ~a~LE~RL~~LE~~l 225 (388)
T PF04912_consen 211 AADLEKRLARLESAL 225 (388)
T ss_pred HHHHHHHHHHHHHHh
Confidence 456777778888887
No 350
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=29.73 E-value=3.7e+02 Score=23.29 Aligned_cols=70 Identities=16% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 006637 400 ELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE 478 (637)
Q Consensus 400 ELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~a~~~~EaElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls 478 (637)
+|...++.++..++.|..+.+.....-...+..+-.. ++.+..++..+..|..++...+.+++.++..+.
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKL---------r~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKL---------RAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 351
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=29.64 E-value=3.8e+02 Score=23.36 Aligned_cols=31 Identities=23% Similarity=0.193 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 006637 372 KLETANADLARALAAAQKKLEMETNQVAELR 402 (637)
Q Consensus 372 ~LE~enaeLAkALA~~QRkLeee~~rvaELr 402 (637)
+||.....+-.-++..|..+++...+...|.
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4444444444444444444444444333333
No 352
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=29.59 E-value=1.7e+02 Score=27.91 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 485 IELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVS 523 (637)
Q Consensus 485 ~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERle 523 (637)
..||.+|..|-..|=.=-++|.+|..|+++|++..+++.
T Consensus 11 ~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR 49 (114)
T COG4467 11 DNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLR 49 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHH
Confidence 567777777666666656788999999999999999985
No 353
>PF14992 TMCO5: TMCO5 family
Probab=29.48 E-value=6.8e+02 Score=27.26 Aligned_cols=34 Identities=21% Similarity=0.115 Sum_probs=20.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006637 389 KKLEMETNQVAELRQQTELKEVAHEELSQRNSNT 422 (637)
Q Consensus 389 RkLeee~~rvaELrqkve~LE~e~esLRqeL~~a 422 (637)
++.+..+-....|-+++...|-...+|-+++...
T Consensus 11 ~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~ 44 (280)
T PF14992_consen 11 KDEQRLDEANQSLLQKIQEKEGAIQSLEREITKM 44 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334344444456667777777777777776665
No 354
>PRK00736 hypothetical protein; Provisional
Probab=29.39 E-value=2.8e+02 Score=23.73 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 006637 366 ALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAH 412 (637)
Q Consensus 366 AlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~ 412 (637)
...|...||...+-....|...-..+-.....++.|..++..|-..+
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777776666666666666666666655555444433
No 355
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=29.36 E-value=7.8e+02 Score=26.86 Aligned_cols=70 Identities=14% Similarity=0.187 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006637 345 MMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSN 421 (637)
Q Consensus 345 mlaS~aALelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~ 421 (637)
.|=+++-|..|+.+ .+-..-.|.-...++...++..||.+.++...+.-++.....+..+.+.|+.+|..
T Consensus 96 AMv~naQLDNek~~-------l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~ 165 (302)
T PF09738_consen 96 AMVSNAQLDNEKSA-------LMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQ 165 (302)
T ss_pred HHHHHhhhchHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56688889998543 45566778889999999999999999998888888888888888888888877654
No 356
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=29.34 E-value=9e+02 Score=28.73 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=13.8
Q ss_pred CCCCCccccccccccccccccccccccCCCCCCC
Q 006637 229 DGRLPSNIRGNHKSNAGIRASVLNDSKRGSSSTS 262 (637)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (637)
+.-+-.+|-=.|+++ .-+++-++-+..+
T Consensus 107 ~~~~d~vvql~hels------~k~ellr~ys~~~ 134 (596)
T KOG4360|consen 107 DAPWDRVVQLGHELS------RKDELLRGYSAAI 134 (596)
T ss_pred cchHHHHHHhhhhhh------hhhhhhheeeecc
Confidence 333344555556554 3456656644443
No 357
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=29.12 E-value=4.2e+02 Score=23.71 Aligned_cols=35 Identities=26% Similarity=0.421 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 443 EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 477 (637)
Q Consensus 443 E~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~l 477 (637)
+.++..+..++..+..++..+..++.+++.++..+
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 90 EFLKKRLETLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555444
No 358
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=29.12 E-value=1.1e+02 Score=31.33 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 006637 506 EALSSEKATLAFRIEA 521 (637)
Q Consensus 506 EsLsSEK~AL~lQLER 521 (637)
|.|+.|-..|--+|-.
T Consensus 166 E~L~~em~~La~~LK~ 181 (251)
T PF09753_consen 166 EDLTEEMLSLARQLKE 181 (251)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677777777766655
No 359
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=29.06 E-value=1.1e+03 Score=28.41 Aligned_cols=31 Identities=42% Similarity=0.463 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHH
Q 006637 292 KILAEKAAAKAGDAIKERENMVARLEGEKQSLEKI 326 (637)
Q Consensus 292 ~~~ae~~a~kA~~~i~eRe~~va~Le~Ek~~lekl 326 (637)
|+|++-+|.|++.-|.+|++ .....++|++-
T Consensus 286 kRlq~~a~lkrv~k~~~re~----~redeqql~~~ 316 (645)
T KOG0681|consen 286 KRLQEQAALKRVEKINAREN----RREDEQQLESY 316 (645)
T ss_pred HHHHHHHHHhhHHHHHHHHh----hhhhHHHHHHH
Confidence 56999999999999999988 33455555554
No 360
>PTZ00491 major vault protein; Provisional
Probab=28.23 E-value=1.3e+03 Score=28.96 Aligned_cols=20 Identities=20% Similarity=0.130 Sum_probs=14.5
Q ss_pred ccccccccCCCCCccccccc
Q 006637 221 VKIGMNDVDGRLPSNIRGNH 240 (637)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~ 240 (637)
+..||+|.-+-|.|-|+|-.
T Consensus 568 v~DFvGd~Ck~iaSrIR~aV 587 (850)
T PTZ00491 568 VPDFVGDACKTIASRVRAAV 587 (850)
T ss_pred cCchHHHHHHHHHHHHHHHH
Confidence 44577888788888888654
No 361
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=28.13 E-value=1.8e+02 Score=33.55 Aligned_cols=55 Identities=13% Similarity=0.158 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006637 367 LQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSN 421 (637)
Q Consensus 367 laREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~ 421 (637)
+.+..+||.+.+.+...+.-+.+..++...++.+|+.++..|+.++++++.....
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~~~ 129 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANPVT 129 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Confidence 3344444444444443333333444444555555555555555555666665443
No 362
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=28.05 E-value=4.1e+02 Score=31.93 Aligned_cols=53 Identities=26% Similarity=0.371 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 456 IIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAV 522 (637)
Q Consensus 456 l~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERl 522 (637)
+..||.+-|+++.||+.+ ...+..|-..+.+||+.|++|..+...-+.+++.+
T Consensus 95 L~ele~krqel~seI~~~--------------n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 95 LTELEVKRQELNSEIEEI--------------NTKIEELKRLIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHHHHHHHHHhHHHHH--------------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 334455555555555443 34455677788999999999999999998888876
No 363
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=27.95 E-value=6.3e+02 Score=25.36 Aligned_cols=8 Identities=25% Similarity=0.534 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 006637 447 AEYTFIAD 454 (637)
Q Consensus 447 ~Els~Le~ 454 (637)
.|+.+++.
T Consensus 170 ~ei~~lk~ 177 (189)
T PF10211_consen 170 EEIDFLKK 177 (189)
T ss_pred HHHHHHHH
Confidence 33333333
No 364
>PRK04406 hypothetical protein; Provisional
Probab=27.75 E-value=4e+02 Score=23.35 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 006637 374 ETANADLARALAAAQKKLEMETNQVAELRQQT 405 (637)
Q Consensus 374 E~enaeLAkALA~~QRkLeee~~rvaELrqkv 405 (637)
+..+.+|-+++++-|+.++....++..|.+++
T Consensus 24 E~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 24 EQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443333
No 365
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=27.75 E-value=5.8e+02 Score=24.88 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHH
Q 006637 362 TRMEALQLLAKLETANADLARALAAAQKKLEMETNQVA-ELRQQTE 406 (637)
Q Consensus 362 TR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rva-ELrqkve 406 (637)
.......++..+.....+..+-++.++..++.+...+. +|+.++.
T Consensus 94 ~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~ek~~a~~~l~~ei~ 139 (173)
T PRK13453 94 KVQARQQQEQIIHEANVRANGMIETAQSEINSQKERAIADINNQVS 139 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555666666666666666666665554433 4544443
No 366
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=27.48 E-value=8.9e+02 Score=26.94 Aligned_cols=45 Identities=16% Similarity=0.164 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 006637 381 ARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQT 425 (637)
Q Consensus 381 AkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~ 425 (637)
...|+..+.+..+....|.++-..+..+-.+++..+++++.-..+
T Consensus 279 ~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~ 323 (359)
T PF10498_consen 279 QDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSS 323 (359)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344455555555555566666555555555666666655554433
No 367
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=27.46 E-value=4.2e+02 Score=27.34 Aligned_cols=64 Identities=19% Similarity=0.337 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 440 FEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRI 519 (637)
Q Consensus 440 aElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQL 519 (637)
+|+..+..++..++++++.|+...+.+++||--|...++.| ++ |..+-.|.-|..-.+-+|
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~e-----em--------------Qe~i~~L~kev~~~~erl 139 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTE-----EM--------------QEEIQELKKEVAGYRERL 139 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH-----HH--------------HHHHHHHHHHHHHHHHHH
Confidence 34445566666677777777776777777766666666432 11 455556666777777555
Q ss_pred HHH
Q 006637 520 EAV 522 (637)
Q Consensus 520 ERl 522 (637)
+.+
T Consensus 140 ~~~ 142 (201)
T KOG4603|consen 140 KNI 142 (201)
T ss_pred HHH
Confidence 544
No 368
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=27.02 E-value=1e+03 Score=27.61 Aligned_cols=7 Identities=14% Similarity=0.173 Sum_probs=4.7
Q ss_pred HHHHHHH
Q 006637 516 AFRIEAV 522 (637)
Q Consensus 516 ~lQLERl 522 (637)
+++||++
T Consensus 207 E~qLerI 213 (475)
T PRK10361 207 EVVLTRV 213 (475)
T ss_pred HHHHHHH
Confidence 6677774
No 369
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=26.93 E-value=3.7e+02 Score=27.82 Aligned_cols=33 Identities=12% Similarity=0.078 Sum_probs=19.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006637 390 KLEMETNQVAELRQQTELKEVAHEELSQRNSNT 422 (637)
Q Consensus 390 kLeee~~rvaELrqkve~LE~e~esLRqeL~~a 422 (637)
+|..-...+..+++||..||.-+..=+++|+..
T Consensus 161 ~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 161 NLKSVREDLDTIEEQVDGLESHLSSKKQELQQL 193 (195)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444556666667766666666555555544
No 370
>PLN02678 seryl-tRNA synthetase
Probab=26.73 E-value=4e+02 Score=30.43 Aligned_cols=77 Identities=17% Similarity=0.197 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 395 TNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTR 474 (637)
Q Consensus 395 ~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~a~~~~EaElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR 474 (637)
..++-.|.++...+..+.+.|+.+.-... +++........+.+.+.++.+.+.++|..|+.++..++.+|..+-
T Consensus 32 id~il~ld~~~r~l~~~~e~lr~erN~~s------k~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~ 105 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLRKEFNKLN------KEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKL 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666666666533322 222111111122233567888899999999999999999888877
Q ss_pred HHh
Q 006637 475 KEI 477 (637)
Q Consensus 475 ~~l 477 (637)
..+
T Consensus 106 ~~i 108 (448)
T PLN02678 106 KTI 108 (448)
T ss_pred HhC
Confidence 666
No 371
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=26.69 E-value=4.6e+02 Score=23.33 Aligned_cols=33 Identities=30% Similarity=0.424 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhC
Q 006637 446 EAEYTFIADKIIQLEDKA----KKLEGNIEMTRKEIE 478 (637)
Q Consensus 446 e~Els~Le~el~~Le~kl----qk~E~EIe~LR~~ls 478 (637)
=+|+..+...+..|+..= +.-|+||.+||.+++
T Consensus 38 i~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 38 IQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555566655554332 355778888888775
No 372
>PRK02793 phi X174 lysis protein; Provisional
Probab=26.66 E-value=4.2e+02 Score=22.89 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 006637 371 AKLETANADLARALAAAQKKLEMETNQVAELRQQTE 406 (637)
Q Consensus 371 a~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve 406 (637)
+=.+..+.+|-+++++-|+.++....++..|.+++.
T Consensus 18 afQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 53 (72)
T PRK02793 18 AFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLK 53 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444443
No 373
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=26.42 E-value=1e+03 Score=27.28 Aligned_cols=140 Identities=20% Similarity=0.192 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 338 ASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 417 (637)
Q Consensus 338 aselq~~mlaS~aALelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRq 417 (637)
...|+..+.....|++.+...+-..-..++.|..+++.....|+..+. +..++.....++.++.+.++.+.......++
T Consensus 157 ~~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~e~~~~~L~~~~~-A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~ 235 (511)
T PF09787_consen 157 PRSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKKEIERQELEERPK-ALRHYIEYLRESGELQEQLELLKAEGESEEA 235 (511)
T ss_pred HhhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 366777777777888889888989999999999999999999999999 5567888888999999999999999999999
Q ss_pred hhhhhhcchhhH----hHHHH-hh-----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 006637 418 RNSNTHQTGIYL----KRLAA-SK-----------GVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE 478 (637)
Q Consensus 418 eL~~a~Q~~~sa----~Ql~a-~~-----------~~EaElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls 478 (637)
++..+.++.... ..+++ ++ ..-.|++.++.|...+.+++..|+.++..+..|++.+..++.
T Consensus 236 el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~ 312 (511)
T PF09787_consen 236 ELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLE 312 (511)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998887443211 11111 11 111334455666666666666666666666666655555553
No 374
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=26.33 E-value=4.7e+02 Score=28.95 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006637 397 QVAELRQQTELKEVAHEELSQRNSNT 422 (637)
Q Consensus 397 rvaELrqkve~LE~e~esLRqeL~~a 422 (637)
+..+|.++.+.+|..+...++.+++.
T Consensus 5 EW~eL~~efq~Lqethr~Y~qKleel 30 (330)
T PF07851_consen 5 EWEELQKEFQELQETHRSYKQKLEEL 30 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666665554
No 375
>PRK04325 hypothetical protein; Provisional
Probab=26.28 E-value=3.2e+02 Score=23.74 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006637 366 ALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKE 409 (637)
Q Consensus 366 AlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE 409 (637)
...|...||...+=....|...-..+-.....++.|..++..|-
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~ 50 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLY 50 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777776666666665555555555555555555444443
No 376
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=26.07 E-value=2.5e+02 Score=22.48 Aligned_cols=32 Identities=13% Similarity=0.221 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 444 ILEAEYTFIADKIIQLEDKAKKLEGNIEMTRK 475 (637)
Q Consensus 444 ~~e~Els~Le~el~~Le~klqk~E~EIe~LR~ 475 (637)
..+..+..++.++..|+.....++.+|..|+.
T Consensus 22 rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 22 RKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556666666666666666666666666654
No 377
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=25.99 E-value=1e+03 Score=27.15 Aligned_cols=49 Identities=29% Similarity=0.408 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 307 KERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRH 359 (637)
Q Consensus 307 ~eRe~~va~Le~Ek~~leklleEr~~qQ~~easelq~~mlaS~aALelEk~aH 359 (637)
.|=+++++-||.|.++|-.-+ |-+..|.+.++--+.-| .--|+.|+.+|
T Consensus 135 aeGDDlt~~LEKEReqL~QQi-EFe~~e~kK~E~~k~Kl---~~qLeeEk~RH 183 (561)
T KOG1103|consen 135 AEGDDLTAHLEKEREQLQQQI-EFEIEEKKKAEIAKDKL---EMQLEEEKKRH 183 (561)
T ss_pred hccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 455566666766666655555 44444554444333322 12367777777
No 378
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=25.89 E-value=7.2e+02 Score=25.33 Aligned_cols=62 Identities=16% Similarity=0.080 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006637 361 NTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT 422 (637)
Q Consensus 361 aTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a 422 (637)
.+-.+...|..+......+....|+..+..+.........+...+.........+..+|...
T Consensus 78 ~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~ 139 (240)
T PF12795_consen 78 LSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNL 139 (240)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34556667777777777777777777777777777777777777777777777777776664
No 379
>PLN02939 transferase, transferring glycosyl groups
Probab=25.80 E-value=1.5e+03 Score=28.88 Aligned_cols=17 Identities=6% Similarity=0.216 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006637 508 LSSEKATLAFRIEAVSR 524 (637)
Q Consensus 508 LsSEK~AL~lQLERler 524 (637)
+...+..|+-+..+++.
T Consensus 322 ~~~~~~~~~~~~~~~~~ 338 (977)
T PLN02939 322 VLDQNQDLRDKVDKLEA 338 (977)
T ss_pred HhccchHHHHHHHHHHH
Confidence 44556666666666653
No 380
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=25.74 E-value=6.5e+02 Score=24.77 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 449 YTFIADKIIQLEDKAKKLEGNIEMTRK 475 (637)
Q Consensus 449 ls~Le~el~~Le~klqk~E~EIe~LR~ 475 (637)
+.+++.++..|..-+.+++++|+.+-.
T Consensus 96 ie~l~k~~~~l~~~~~~l~~~l~~l~~ 122 (145)
T COG1730 96 IEFLKKRIEELEKAIEKLQQALAELAQ 122 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 381
>PF10587 EF-1_beta_acid: Eukaryotic elongation factor 1 beta central acidic region; InterPro: IPR018940 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This region is found in the centre of the beta subunits of Elongation factor-1. More information about these proteins can be found at Protein of the Month: Elongation Factors [].
Probab=25.61 E-value=54 Score=24.31 Aligned_cols=12 Identities=58% Similarity=0.833 Sum_probs=6.7
Q ss_pred cccHHHHHHHHH
Q 006637 275 SESESEREREER 286 (637)
Q Consensus 275 ~~se~e~~r~~~ 286 (637)
+|.|-+|.|++|
T Consensus 9 ed~ea~r~reeR 20 (28)
T PF10587_consen 9 EDEEAERIREER 20 (28)
T ss_pred ccHHHHHHHHHH
Confidence 455556555554
No 382
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=25.51 E-value=6.3e+02 Score=30.44 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 365 EALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 418 (637)
Q Consensus 365 qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqe 418 (637)
|..++-.+|..+++++---+..|++.+..++.+...|+-.++..+.++.+|++.
T Consensus 97 ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 97 ELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 444555678888888888888899999888888888888888888888888874
No 383
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=25.48 E-value=1.2e+03 Score=27.85 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 485 IELKRRLGQLTDHLIQKQAQVEALSSEKATLA 516 (637)
Q Consensus 485 ~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~ 516 (637)
..|..=|.+..+.-+.=|..||.+.++-+.-.
T Consensus 542 ~ql~~~i~~i~~~k~~iqs~le~~k~~~~~~~ 573 (581)
T KOG0995|consen 542 KQLFAVIDQISDFKVSIQSSLENLKADLHKEC 573 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555666666777777666544443
No 384
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=25.26 E-value=5.8e+02 Score=24.01 Aligned_cols=52 Identities=25% Similarity=0.455 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 465 KLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVS 523 (637)
Q Consensus 465 k~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERle 523 (637)
++.+...-|++++ ++-...-..|++.|-.|-+.|-.+..|+-+|.|+-.+|.
T Consensus 9 KLraQ~~vLKKaV-------ieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~ 60 (102)
T PF10205_consen 9 KLRAQNQVLKKAV-------IEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLT 60 (102)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445544 445566668888888888888888888888888877764
No 385
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=25.16 E-value=3.6e+02 Score=21.58 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 006637 380 LARALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 416 (637)
Q Consensus 380 LAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLR 416 (637)
..++..+-+...++....+..|..+...|..++..|+
T Consensus 16 A~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 16 ARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444445555555444444444444
No 386
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.91 E-value=82 Score=33.43 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCCCcccCccccchhhcccc
Q 006637 590 IAKLWSLVYLVCLHLWVIYILLSHSQSSAEARSGAVFSLENINN 633 (637)
Q Consensus 590 ~ARllfiiYlllLHLwVf~vL~~~s~~ss~grsgA~~slen~~~ 633 (637)
.-|.+|++++.+|-|+.|+.|... -||+|+..+=+|++-
T Consensus 250 ~~ra~fli~lgvLafi~~i~lM~r-----lGr~g~ds~Dpn~dP 288 (299)
T KOG3970|consen 250 KKRALFLIFLGVLAFITIIMLMKR-----LGRSGEDSSDPNFDP 288 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----hcccccccCCCCCCC
Confidence 468899999888888877776543 478888888788764
No 387
>PF08409 DUF1736: Domain of unknown function (DUF1736); InterPro: IPR013618 This domain of unknown function is found in various hypothetical metazoan proteins.
Probab=24.83 E-value=81 Score=28.02 Aligned_cols=28 Identities=14% Similarity=0.335 Sum_probs=21.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhcCC
Q 006637 588 NPIAKLWSLVYLVCLHLWVIYILLSHSQ 615 (637)
Q Consensus 588 ~P~ARllfiiYlllLHLwVf~vL~~~s~ 615 (637)
+...|.+.+.|+.++|+|.++.-.+.+.
T Consensus 21 ~~~tR~LT~~yl~~~n~~LLl~P~~L~~ 48 (80)
T PF08409_consen 21 SLLTRWLTYNYLPAFNLWLLLFPSWLCF 48 (80)
T ss_pred cHHHHHHHHHHHHHHHHHHHHCccccCC
Confidence 4567899999999999999776655433
No 388
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=24.47 E-value=4.4e+02 Score=22.39 Aligned_cols=41 Identities=12% Similarity=0.111 Sum_probs=20.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcch
Q 006637 386 AAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTG 426 (637)
Q Consensus 386 ~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~ 426 (637)
.++.-+......+..+...+..++.+.+.++..+..+.+..
T Consensus 49 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~ 89 (123)
T PF02050_consen 49 NYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRER 89 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555555555555555554443
No 389
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=24.32 E-value=5.5e+02 Score=23.39 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 451 FIADKIIQLEDKAKKLEGNIEMTRKE 476 (637)
Q Consensus 451 ~Le~el~~Le~klqk~E~EIe~LR~~ 476 (637)
+++.++..|+..+..++.+|..++.+
T Consensus 90 ~l~~~~~~l~~~~~~l~~~l~~l~~~ 115 (126)
T TIGR00293 90 FLKKRIEELEKAIEKLQEALAELASR 115 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 390
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=24.29 E-value=6.7e+02 Score=24.44 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 489 RRLGQLTDHLIQKQAQVEALSSEKATLA 516 (637)
Q Consensus 489 ~RL~qLTE~LIqKQTQLEsLsSEK~AL~ 516 (637)
+.||.-++.|+.+|+.|+.+..+..+--
T Consensus 45 ~~l~~~ce~Ll~eq~~L~~~ae~I~~~L 72 (157)
T PF04136_consen 45 NSLHEACEQLLEEQTRLEELAEEISEKL 72 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4688999999999999999998887654
No 391
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=24.17 E-value=1.2e+03 Score=27.34 Aligned_cols=67 Identities=24% Similarity=0.310 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC-Cch-hHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 454 DKIIQLEDKAKKLEGNIEMTRKEIED-PTE-VEIELKRRLG-------QLTDHLIQKQAQVEALSSEKATLAFRIE 520 (637)
Q Consensus 454 ~el~~Le~klqk~E~EIe~LR~~ls~-pT~-~q~ELE~RL~-------qLTE~LIqKQTQLEsLsSEK~AL~lQLE 520 (637)
..+..+..++..++.+|+.+...+.. |.. .-..+..++. .+...+-..+.+++.+..+...+.-++.
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLD 466 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777888888888877765 442 2233333333 3333344444444444444444444343
No 392
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=23.96 E-value=6e+02 Score=23.71 Aligned_cols=52 Identities=15% Similarity=0.010 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHHH
Q 006637 383 ALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAA 434 (637)
Q Consensus 383 ALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~a 434 (637)
.+-.++.-+.-....+....+.+..++..++..+..+..+.++......+..
T Consensus 65 ~l~~~~~fi~~L~~~I~~q~~~v~~~~~~ve~~r~~~~~a~~~~k~lEkL~e 116 (147)
T PRK05689 65 WWINYQQFLQQLEKAITQQRQQLTQWTQKVDNARKYWQEKKQRLEALETLQE 116 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666677777777777777778777777777766555544433
No 393
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=23.81 E-value=1.4e+03 Score=27.92 Aligned_cols=8 Identities=25% Similarity=0.368 Sum_probs=4.1
Q ss_pred CCCccchH
Q 006637 47 SGSVSLKD 54 (637)
Q Consensus 47 ~~~~~~~~ 54 (637)
|+.++..|
T Consensus 81 g~~l~~~e 88 (782)
T PRK00409 81 GGVLSGDE 88 (782)
T ss_pred CCCCCHHH
Confidence 55555544
No 394
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.38 E-value=81 Score=30.17 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Q 006637 591 AKLWSLVYLVCLHLWVIYILLSH 613 (637)
Q Consensus 591 ARllfiiYlllLHLwVf~vL~~~ 613 (637)
.+.-..|||++.-+++||++|++
T Consensus 94 sg~~l~~~m~~f~lV~~fi~~~~ 116 (118)
T KOG3385|consen 94 SGISLLCWMAVFSLVAFFILWVW 116 (118)
T ss_pred CCcchHHHHHHHHHHHHHHhhee
Confidence 66677888888888888888765
No 395
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=23.17 E-value=5.6e+02 Score=23.13 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 345 MMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEME 394 (637)
Q Consensus 345 mlaS~aALelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee 394 (637)
|.....+|..-+.-+......+..|+..|......+...+.....-+.+-
T Consensus 9 ~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken 58 (126)
T PF13863_consen 9 MFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKEN 58 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555666666666666666666666666666666666555555444433
No 396
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=23.17 E-value=2.3e+02 Score=23.97 Aligned_cols=40 Identities=10% Similarity=0.124 Sum_probs=24.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhH
Q 006637 390 KLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYL 429 (637)
Q Consensus 390 kLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa 429 (637)
+++.....|..|..++..|......++.++..+..+...+
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRA 43 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARA 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666677777666666676666655554433333
No 397
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=22.99 E-value=5e+02 Score=22.48 Aligned_cols=41 Identities=15% Similarity=0.112 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006637 380 LARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNS 420 (637)
Q Consensus 380 LAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~ 420 (637)
+...|..++.+.+.-..-+..+......++...+..+.++.
T Consensus 5 L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~ 45 (127)
T smart00502 5 LEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIK 45 (127)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555555554443
No 398
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=22.96 E-value=6.4e+02 Score=23.97 Aligned_cols=30 Identities=30% Similarity=0.433 Sum_probs=9.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 329 ERAKQQVKEASELQTSMMETMDAFELEKQRH 359 (637)
Q Consensus 329 Er~~qQ~~easelq~~mlaS~aALelEk~aH 359 (637)
.|.+.|..+...++..|-+....++ +++.|
T Consensus 37 ~R~~~Q~~~~~~~~~~l~~i~~~l~-~L~~~ 66 (141)
T PF13874_consen 37 KRVEAQEEEIAQHRERLKEINDKLE-ELQKH 66 (141)
T ss_dssp ---------HHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh
Confidence 4555566555555555544444433 22444
No 399
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=22.95 E-value=3.4e+02 Score=25.53 Aligned_cols=43 Identities=23% Similarity=0.319 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 485 IELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLD 527 (637)
Q Consensus 485 ~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERlerl~e 527 (637)
..||.++..|...+-.=..++-.|..|+++|++.-+.+.....
T Consensus 11 ~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 11 DDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888888888999999999988888764333
No 400
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=22.89 E-value=2.9e+02 Score=26.81 Aligned_cols=48 Identities=10% Similarity=0.176 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006637 368 QLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEEL 415 (637)
Q Consensus 368 aREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esL 415 (637)
+...+++..+..|...+-.+|..+..+..+|..|+.++..+...-..|
T Consensus 80 a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~L 127 (131)
T PF04859_consen 80 AEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSL 127 (131)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344567777888888888888888888888888888887665544443
No 401
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=22.77 E-value=1.1e+03 Score=26.56 Aligned_cols=47 Identities=13% Similarity=0.090 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHH
Q 006637 361 NTRMEALQLLAKLETANADLARALAAAQKKLEMETNQV-AELRQQTEL 407 (637)
Q Consensus 361 aTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rv-aELrqkve~ 407 (637)
+.......++.-++....+..+-+..++..++.+..++ .+|+.++..
T Consensus 76 A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~~a~~elr~ei~~ 123 (445)
T PRK13428 76 AREDAERIAEQLRAQADAEAERIKVQGARQVQLLRAQLTRQLRLELGH 123 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445556666666677777777777777665554 466666543
No 402
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=22.45 E-value=3.8e+02 Score=29.93 Aligned_cols=28 Identities=14% Similarity=0.347 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 446 EAEYTFIADKIIQLEDKAKKLEGNIEMT 473 (637)
Q Consensus 446 e~Els~Le~el~~Le~klqk~E~EIe~L 473 (637)
...+..+..++..|..++..++.+++..
T Consensus 381 ~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 381 KEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444555555555555555544444
No 403
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=22.27 E-value=7.9e+02 Score=24.49 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=29.6
Q ss_pred HHHhCCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 474 RKEIEDPTEV-EIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVS 523 (637)
Q Consensus 474 R~~ls~pT~~-q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERle 523 (637)
-.....+|.. ..+.=..-+.+.-.|.-++.+-..|...+..|+.+|.++.
T Consensus 68 S~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~ 118 (159)
T PF05384_consen 68 SRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLE 118 (159)
T ss_pred HhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445542 1222233455566666677777777777777777777765
No 404
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=22.19 E-value=6.5e+02 Score=23.48 Aligned_cols=38 Identities=18% Similarity=0.229 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006637 360 NNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQ 397 (637)
Q Consensus 360 saTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~r 397 (637)
..+-.++..++.+|+....+|.......++.++.....
T Consensus 72 ~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~ 109 (158)
T PF03938_consen 72 TLSEEERQKRQQELQQKEQELQQFQQQAQQQLQQEEQE 109 (158)
T ss_dssp --SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556667777778878888887777777776655543
No 405
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=22.18 E-value=1.1e+03 Score=26.19 Aligned_cols=45 Identities=18% Similarity=0.162 Sum_probs=30.5
Q ss_pred hhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 006637 573 QLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYILLSHSQSS 617 (637)
Q Consensus 573 ~LD~~~lrlgrfLrR~P~ARllfiiYlllLHLwVf~vL~~~s~~s 617 (637)
--+++=++++..+.--|.+=.+++-|-+.-.++-|.++|+|.+.+
T Consensus 122 EYEkFKl~~tii~l~~~~~~~~~~~~r~~d~~~~f~lvwyY~tLt 166 (330)
T PF07851_consen 122 EYEKFKLYLTIILLLFAVALLFLLNYRVLDQLFNFLLVWYYCTLT 166 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666677666677777777777777777776653
No 406
>PF06770 Arif-1: Actin-rearrangement-inducing factor (Arif-1); InterPro: IPR010639 This family consists of several Nucleopolyhedrovirus actin-rearrangement-inducing factor (Arif-1) proteins. In response to Autographa californica nuclear polyhedrosis virus (AcMNPV) infection, a sequential rearrangement of the actin cytoskeleton occurs this is induced by Arif-1 []. Arif-1 is tyrosine phosphorylated and is located at the plasma membrane as a component of the actin rearrangement-inducing complex [].
Probab=22.13 E-value=1.1e+02 Score=31.63 Aligned_cols=30 Identities=20% Similarity=0.626 Sum_probs=26.6
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHHHHHHHh
Q 006637 583 VFLRRNPIAKLWSLVYLVCLHLWVIYILLS 612 (637)
Q Consensus 583 rfLrR~P~ARllfiiYlllLHLwVf~vL~~ 612 (637)
-|++.|+.+=+++++.++++|.|-|++++-
T Consensus 163 Tf~kqnr~~l~~~~l~~l~~~~w~l~v~~k 192 (196)
T PF06770_consen 163 TFFKQNRFTLIMFVLLILVLNCWNLYVLYK 192 (196)
T ss_pred hhhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 467779999999999999999999999874
No 407
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=21.99 E-value=5.2e+02 Score=22.32 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=26.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006637 387 AQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH 423 (637)
Q Consensus 387 ~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~ 423 (637)
..=.++.-...+.+|.+....|-..++.+..+|....
T Consensus 12 l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~ 48 (92)
T PF14712_consen 12 LEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELN 48 (92)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666667777777777777777777777776664
No 408
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.99 E-value=1.7e+03 Score=28.15 Aligned_cols=38 Identities=16% Similarity=0.066 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 440 FEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 477 (637)
Q Consensus 440 aElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~l 477 (637)
.|+.....|+..+.++...++.++.+....|+.+++..
T Consensus 737 eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~ 774 (970)
T KOG0946|consen 737 EELNAALSENKKLENDQELLTKELNKKNADIESFKATQ 774 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 44555667777777776667777766666666655443
No 409
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=21.91 E-value=4.9e+02 Score=23.68 Aligned_cols=57 Identities=19% Similarity=0.323 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCC--Cch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 456 IIQLEDKAKKLEGNIEMTRKEIED--PTE-VEIELKRRLGQLTDHLIQKQAQVEALSSEK 512 (637)
Q Consensus 456 l~~Le~klqk~E~EIe~LR~~ls~--pT~-~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK 512 (637)
|..++.++..-...++.+-..+.. .|+ .-..||+-+..|...|-.-..+|-.|..|+
T Consensus 7 Id~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkEN 66 (85)
T PF15188_consen 7 IDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKEN 66 (85)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhh
Confidence 334445555555555555555543 233 346777777777777666665555555543
No 410
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=21.45 E-value=1.1e+03 Score=25.87 Aligned_cols=168 Identities=19% Similarity=0.195 Sum_probs=0.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 006637 275 SESESEREREERRKLKEKILAEKAAAKAGDAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFEL 354 (637)
Q Consensus 275 ~~se~e~~r~~~r~~~~~~~ae~~a~kA~~~i~eRe~~va~Le~Ek~~leklleEr~~qQ~~easelq~~mlaS~aALel 354 (637)
+..++=.+.-+.-.||++|+--+.|.| |.|-+++---..+...||.=.+-+|+++||.---.+.-
T Consensus 115 ~se~~lkqQ~~~a~RrE~ilv~rlA~k---------------EQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F 179 (330)
T KOG2991|consen 115 ESEEKLKQQQQEAARRENILVMRLATK---------------EQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFF 179 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHH
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhHHHHHHHHHHHHHHHHHHHHHHH---hh
Q 006637 355 EKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLE------------METNQVAELRQQTELKEVAHEELSQ---RN 419 (637)
Q Consensus 355 Ek~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLe------------ee~~rvaELrqkve~LE~e~esLRq---eL 419 (637)
++-.- +..+--+-|..+|.+|- ...++|.-|.++.+.+=......|- ++
T Consensus 180 ~rlK~----------------ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria~Le~ 243 (330)
T KOG2991|consen 180 LRLKG----------------ELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIAELEI 243 (330)
T ss_pred HHHHH----------------HHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHHHHHH
Q ss_pred hhhhcchhhHhHHHHhhchHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 420 SNTHQTGIYLKRLAASKGVEFER----EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 477 (637)
Q Consensus 420 ~~a~Q~~~sa~Ql~a~~~~EaEl----E~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~l 477 (637)
..+-|+ ++-...+--..|+ +.+..++.-++..|.-||.+|...+++|+.+.+-+
T Consensus 244 eLAmQK----s~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~ 301 (330)
T KOG2991|consen 244 ELAMQK----SQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGL 301 (330)
T ss_pred HHHHHH----hhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHH
No 411
>PRK14011 prefoldin subunit alpha; Provisional
Probab=21.33 E-value=7.7e+02 Score=24.06 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 450 TFIADKIIQLEDKAKKLEGNIEMT 473 (637)
Q Consensus 450 s~Le~el~~Le~klqk~E~EIe~L 473 (637)
.+++.++..|+....++..-|+.+
T Consensus 91 ~~~~~ri~~l~~~~~~l~~~i~~~ 114 (144)
T PRK14011 91 EDFKKSVEELDKTKKEGNKKIEEL 114 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443333333333333333
No 412
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=21.14 E-value=1.5e+03 Score=27.35 Aligned_cols=15 Identities=27% Similarity=0.572 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 006637 488 KRRLGQLTDHLIQKQ 502 (637)
Q Consensus 488 E~RL~qLTE~LIqKQ 502 (637)
-.+|..+...|+.|.
T Consensus 282 ~~~L~~~~~~l~~~~ 296 (670)
T KOG0239|consen 282 QSDLESLEENLVEKK 296 (670)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444555555555
No 413
>PRK14127 cell division protein GpsB; Provisional
Probab=21.14 E-value=5.2e+02 Score=24.38 Aligned_cols=53 Identities=17% Similarity=0.418 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------------chhHHHHHHHHHHHHHHHH
Q 006637 447 AEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDP-------------TEVEIELKRRLGQLTDHLI 499 (637)
Q Consensus 447 ~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~p-------------T~~q~ELE~RL~qLTE~LI 499 (637)
.+|..+..++..|+.++..++.+|..++.++..+ +....++=+||.-|=....
T Consensus 37 ~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~tn~DiLKRls~LEk~VF 102 (109)
T PRK14127 37 KDYEAFQKEIEELQQENARLKAQVDELTKQVSVGASSSSVATTQPSSSATNYDILKRLSNLEKHVF 102 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCcchHHHHHHHHHHHHHHh
Confidence 4444445555555555555555555555444321 1234566677666654444
No 414
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=21.11 E-value=7.1e+02 Score=25.23 Aligned_cols=41 Identities=7% Similarity=0.097 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHH
Q 006637 447 AEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIEL 487 (637)
Q Consensus 447 ~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~EL 487 (637)
.++..++.++..++.++...+.++++++.-......++.++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~ 104 (322)
T TIGR01730 64 LALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADL 104 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 44444555555555556666666666665554433333343
No 415
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.05 E-value=8e+02 Score=24.10 Aligned_cols=70 Identities=21% Similarity=0.292 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 454 DKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIE-LKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVS 523 (637)
Q Consensus 454 ~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~E-LE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERle 523 (637)
..+..+-.++..+++.++.++.+.+..+..... .+.....+.+.+-....+|+....|..+|.-|.|.++
T Consensus 118 ~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 118 RRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566677777777777766543321111 1122222222333333333334444445555555543
No 416
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=20.73 E-value=1.3e+03 Score=26.54 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006637 484 EIELKRRLGQLTDHLIQK 501 (637)
Q Consensus 484 q~ELE~RL~qLTE~LIqK 501 (637)
..+|+.++..+.+.|...
T Consensus 348 le~L~~el~~l~~~l~~~ 365 (563)
T TIGR00634 348 LEALEEEVDKLEEELDKA 365 (563)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666666666666533
No 417
>PLN02320 seryl-tRNA synthetase
Probab=20.73 E-value=3.8e+02 Score=31.16 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=16.6
Q ss_pred chhhhhhhhhhHH---HHHHHHH-HhhchhhHH--HHHHHHHHHH
Q 006637 565 KHIGSLLKQLDSI---FLAGVVF-LRRNPIAKL--WSLVYLVCLH 603 (637)
Q Consensus 565 R~v~sal~~LD~~---~lrlgrf-LrR~P~ARl--lfiiYlllLH 603 (637)
+.++..+..+|-- -+.+.+| ......+++ ..+-|++-.|
T Consensus 203 ~eLg~~L~Lfdf~~aakvsG~~f~~L~g~~a~Le~ALi~f~ld~~ 247 (502)
T PLN02320 203 LQLGKELDLFDFDAAAEVSGSKFYYLKNEAVLLEMALVNWTLSEV 247 (502)
T ss_pred HHHHHHcCCccccchhhcCCCeeEEeCCHHHHHHHHHHHHHHHHH
Confidence 4445545445421 1123344 244444443 4455555444
No 418
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=20.41 E-value=1e+03 Score=25.10 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 452 IADKIIQLEDKAKKLEGNIEMTRK 475 (637)
Q Consensus 452 Le~el~~Le~klqk~E~EIe~LR~ 475 (637)
++++...++..+..+...|+..+.
T Consensus 234 le~~~~~~ee~~~~L~ekme~e~~ 257 (297)
T PF02841_consen 234 LEQQERSYEEHIKQLKEKMEEERE 257 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 419
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=20.40 E-value=6.7e+02 Score=25.18 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006637 445 LEAEYTFIADKIIQLEDKAKKLE 467 (637)
Q Consensus 445 ~e~Els~Le~el~~Le~klqk~E 467 (637)
++.|+..|-..|+.|+.++.+.+
T Consensus 123 hr~e~ee~~~~l~~le~~~~~~e 145 (175)
T PRK13182 123 HRREMEEMLERLQKLEARLKKLE 145 (175)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666777777666654
No 420
>PRK09343 prefoldin subunit beta; Provisional
Probab=20.14 E-value=7.2e+02 Score=23.23 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=23.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006637 386 AAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT 422 (637)
Q Consensus 386 ~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a 422 (637)
.++..++....+.-.+++++..+..+...+..++...
T Consensus 4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~ 40 (121)
T PRK09343 4 NIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREI 40 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666677777666666666666655554
No 421
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=20.08 E-value=6.3e+02 Score=28.32 Aligned_cols=77 Identities=22% Similarity=0.227 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 395 TNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTR 474 (637)
Q Consensus 395 ~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~a~~~~EaElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR 474 (637)
..++-+|..+...+..+.++|+.+.-...... ........+.+.+.++...+.+++..++.++..+++++..+-
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i------~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEI------GQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELL 100 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666643332221 110111112233566777888888888888888888888776
Q ss_pred HHh
Q 006637 475 KEI 477 (637)
Q Consensus 475 ~~l 477 (637)
..+
T Consensus 101 ~~i 103 (425)
T PRK05431 101 LRI 103 (425)
T ss_pred HhC
Confidence 665
Done!