Query 006637
Match_columns 637
No_of_seqs 123 out of 140
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 04:56:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006637.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006637hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 97.7 9E-05 3.1E-09 87.3 11.0 7 157-163 685-691 (1184)
2 1c1g_A Tropomyosin; contractIl 97.7 0.03 1E-06 51.6 32.8 18 503-520 258-275 (284)
3 1i84_S Smooth muscle myosin he 97.5 0.00013 4.5E-09 85.9 8.5 19 307-325 881-899 (1184)
4 3na7_A HP0958; flagellar bioge 96.9 0.39 1.3E-05 47.6 24.9 137 350-507 14-150 (256)
5 3vkg_A Dynein heavy chain, cyt 96.5 0.43 1.5E-05 62.2 26.6 41 485-525 2059-2099(3245)
6 2dfs_A Myosin-5A; myosin-V, in 96.4 0.43 1.5E-05 56.5 24.0 36 485-523 1008-1043(1080)
7 3na7_A HP0958; flagellar bioge 96.3 0.34 1.2E-05 47.9 19.8 57 353-409 24-80 (256)
8 2v71_A Nuclear distribution pr 96.0 0.85 2.9E-05 44.5 19.9 119 389-523 49-167 (189)
9 2dfs_A Myosin-5A; myosin-V, in 95.4 2.3 7.9E-05 50.4 24.5 53 371-423 917-973 (1080)
10 3vkg_A Dynein heavy chain, cyt 95.0 4.5 0.00016 53.1 27.0 138 300-437 1923-2083(3245)
11 2fxo_A Myosin heavy chain, car 94.2 3.1 0.00011 37.6 18.3 91 333-423 34-124 (129)
12 3o0z_A RHO-associated protein 93.6 5.4 0.00019 38.4 21.8 112 375-523 34-149 (168)
13 3oja_B Anopheles plasmodium-re 93.6 2.6 9E-05 45.0 17.8 115 304-422 456-570 (597)
14 2b9c_A Striated-muscle alpha t 93.0 0.56 1.9E-05 43.9 10.1 46 453-498 100-145 (147)
15 2v66_B Nuclear distribution pr 91.6 4.2 0.00014 36.8 13.6 106 396-517 3-108 (111)
16 3oja_B Anopheles plasmodium-re 91.2 3.8 0.00013 43.7 15.2 11 373-383 514-524 (597)
17 2ocy_A RAB guanine nucleotide 88.7 17 0.00057 34.6 16.1 33 484-516 110-142 (154)
18 4gkw_A Spindle assembly abnorm 87.9 5.7 0.00019 37.3 11.6 120 393-523 8-132 (167)
19 3ol1_A Vimentin; structural ge 87.6 3.2 0.00011 37.2 9.6 35 465-499 66-100 (119)
20 3ol1_A Vimentin; structural ge 86.6 17 0.00058 32.5 13.8 42 379-420 17-58 (119)
21 1f5n_A Interferon-induced guan 85.4 4.3 0.00015 45.2 11.3 113 364-478 462-584 (592)
22 3q8t_A Beclin-1; autophagy, AT 84.5 14 0.00046 32.2 11.7 38 486-523 57-94 (96)
23 3mq9_A Bone marrow stromal ant 82.5 16 0.00055 38.1 13.6 32 45-76 86-123 (471)
24 1x79_B RAB GTPase binding effe 82.0 9.2 0.00032 34.6 9.9 103 399-516 2-104 (112)
25 2v4h_A NF-kappa-B essential mo 80.5 14 0.00049 33.4 10.5 34 377-410 26-59 (110)
26 2i1j_A Moesin; FERM, coiled-co 79.6 2 6.7E-05 47.6 5.7 61 362-422 329-389 (575)
27 3swk_A Vimentin; cytoskeleton, 77.0 7.1 0.00024 33.4 7.2 36 464-499 45-80 (86)
28 3ghg_A Fibrinogen alpha chain; 76.1 44 0.0015 37.3 14.7 16 507-522 230-245 (562)
29 2v66_B Nuclear distribution pr 75.6 46 0.0016 30.0 16.3 92 311-413 10-101 (111)
30 3u59_A Tropomyosin beta chain; 75.4 40 0.0014 29.2 14.4 13 447-459 86-98 (101)
31 3u1c_A Tropomyosin alpha-1 cha 75.0 42 0.0014 29.2 15.1 24 397-420 45-68 (101)
32 3tnu_B Keratin, type II cytosk 74.5 43 0.0015 30.0 12.0 13 465-477 114-126 (129)
33 3tnu_A Keratin, type I cytoske 72.4 41 0.0014 30.2 11.4 13 465-477 116-128 (131)
34 2zqm_A Prefoldin beta subunit 71.7 31 0.001 29.5 10.0 38 378-415 9-46 (117)
35 3hnw_A Uncharacterized protein 71.4 26 0.00089 32.3 10.0 24 447-470 110-133 (138)
36 3iox_A AGI/II, PA; alpha helix 70.6 80 0.0027 35.0 15.0 49 370-418 4-56 (497)
37 1x79_B RAB GTPase binding effe 70.0 37 0.0013 30.7 10.4 78 312-389 21-98 (112)
38 3s4r_A Vimentin; alpha-helix, 68.8 57 0.0019 28.2 12.0 38 439-476 55-92 (93)
39 1m1j_C Fibrinogen gamma chain; 68.4 60 0.0021 34.9 13.4 46 378-423 23-68 (409)
40 3hnw_A Uncharacterized protein 68.0 75 0.0026 29.2 13.9 49 370-418 77-125 (138)
41 2fxo_A Myosin heavy chain, car 67.6 70 0.0024 28.7 17.2 12 464-475 107-118 (129)
42 1fxk_A Prefoldin; archaeal pro 67.2 54 0.0019 27.6 10.5 94 382-477 8-102 (107)
43 3u1c_A Tropomyosin alpha-1 cha 66.1 67 0.0023 27.9 15.7 56 451-520 41-96 (101)
44 3q8t_A Beclin-1; autophagy, AT 65.7 67 0.0023 27.9 12.2 24 485-508 70-93 (96)
45 3o0z_A RHO-associated protein 65.1 1E+02 0.0035 29.7 21.7 52 367-418 54-112 (168)
46 3i00_A HIP-I, huntingtin-inter 64.7 28 0.00095 31.7 8.6 103 307-413 11-116 (120)
47 4dk0_A Putative MACA; alpha-ha 64.6 40 0.0014 33.6 10.6 37 443-479 118-154 (369)
48 3s4r_A Vimentin; alpha-helix, 63.3 32 0.0011 29.7 8.4 70 447-523 9-83 (93)
49 2xdj_A Uncharacterized protein 63.0 47 0.0016 28.4 9.2 55 368-422 6-60 (83)
50 3oja_A Leucine-rich immune mol 62.9 1.5E+02 0.0052 30.9 16.6 15 492-506 470-484 (487)
51 2v4h_A NF-kappa-B essential mo 62.8 76 0.0026 28.8 10.9 23 503-525 83-105 (110)
52 2jee_A YIIU; FTSZ, septum, coi 62.1 77 0.0026 27.3 10.6 22 445-466 53-74 (81)
53 2i1j_A Moesin; FERM, coiled-co 60.5 13 0.00043 41.2 6.6 50 372-421 409-458 (575)
54 3viq_B Mating-type switching p 59.7 24 0.00081 30.7 6.8 58 450-507 4-69 (85)
55 3swk_A Vimentin; cytoskeleton, 58.4 73 0.0025 27.1 9.6 37 439-475 48-84 (86)
56 3mq9_A Bone marrow stromal ant 58.1 1.8E+02 0.0061 30.2 16.0 35 382-416 436-470 (471)
57 2efr_A General control protein 56.5 1.3E+02 0.0046 28.3 23.9 51 363-413 65-115 (155)
58 1ic2_A Tropomyosin alpha chain 56.4 60 0.002 27.0 8.6 20 454-473 41-60 (81)
59 2lw1_A ABC transporter ATP-bin 56.3 65 0.0022 27.1 9.0 57 455-512 23-79 (89)
60 1l8d_A DNA double-strand break 55.9 96 0.0033 26.4 13.0 33 445-477 69-101 (112)
61 3nmd_A CGMP dependent protein 55.5 29 0.001 29.3 6.5 45 435-479 21-65 (72)
62 3nmd_A CGMP dependent protein 55.2 45 0.0015 28.2 7.6 47 377-423 21-67 (72)
63 2eqb_B RAB guanine nucleotide 54.8 1.1E+02 0.0039 27.0 14.3 53 367-419 11-63 (97)
64 2zuo_A MVP, major vault protei 54.1 3.3E+02 0.011 32.1 21.3 21 492-512 774-794 (861)
65 3jsv_C NF-kappa-B essential mo 53.2 71 0.0024 28.2 8.8 31 372-402 6-36 (94)
66 1deq_A Fibrinogen (alpha chain 52.1 1.8E+02 0.006 31.4 13.2 120 386-510 53-193 (390)
67 3qh9_A Liprin-beta-2; coiled-c 51.2 1.2E+02 0.0041 26.2 10.7 32 448-479 48-79 (81)
68 3bas_A Myosin heavy chain, str 50.6 1.2E+02 0.004 25.8 12.3 38 486-523 46-83 (89)
69 3fpp_A Macrolide-specific effl 50.0 47 0.0016 32.8 8.2 36 443-478 117-152 (341)
70 3mov_A Lamin-B1; LMNB1, B-type 49.3 91 0.0031 27.1 8.9 38 308-345 9-46 (95)
71 3a7p_A Autophagy protein 16; c 49.3 99 0.0034 29.4 9.7 38 486-523 79-116 (152)
72 3cvf_A Homer-3, homer protein 47.5 69 0.0023 27.4 7.6 37 363-399 8-44 (79)
73 3u59_A Tropomyosin beta chain; 46.6 1.4E+02 0.0048 25.7 15.3 33 488-520 64-96 (101)
74 2b5u_A Colicin E3; high resolu 46.5 3.5E+02 0.012 30.2 20.2 56 276-331 292-355 (551)
75 2jee_A YIIU; FTSZ, septum, coi 46.3 1.4E+02 0.0049 25.6 11.3 63 451-520 10-72 (81)
76 2e7s_A RAB guanine nucleotide 45.8 32 0.0011 32.1 5.8 32 484-515 98-129 (135)
77 3tnu_A Keratin, type I cytoske 45.4 1.1E+02 0.0038 27.4 9.2 21 396-416 38-58 (131)
78 3mq7_A Bone marrow stromal ant 45.3 1.8E+02 0.0063 26.6 14.7 29 449-477 73-101 (121)
79 2ocy_A RAB guanine nucleotide 42.4 2.3E+02 0.0078 26.9 18.8 97 375-479 51-147 (154)
80 3m9b_A Proteasome-associated A 41.0 19 0.00065 36.6 3.8 70 463-532 26-97 (251)
81 3mq7_A Bone marrow stromal ant 40.1 2.2E+02 0.0076 26.1 10.2 35 485-519 74-108 (121)
82 2k48_A Nucleoprotein; viral pr 40.0 1.6E+02 0.0054 26.6 9.0 15 345-359 33-47 (107)
83 2b9c_A Striated-muscle alpha t 40.0 1.3E+02 0.0045 27.9 9.0 15 485-499 104-118 (147)
84 3cve_A Homer protein homolog 1 39.9 1.7E+02 0.0058 24.6 9.4 34 365-398 4-37 (72)
85 3oja_A Leucine-rich immune mol 39.3 3.5E+02 0.012 28.1 17.7 28 315-342 364-391 (487)
86 2e7s_A RAB guanine nucleotide 39.0 1.2E+02 0.0042 28.2 8.5 65 352-422 51-115 (135)
87 3efg_A Protein SLYX homolog; x 38.8 74 0.0025 26.8 6.5 17 368-384 14-30 (78)
88 4dk0_A Putative MACA; alpha-ha 38.1 1.5E+02 0.0051 29.5 9.8 79 441-523 71-149 (369)
89 3k29_A Putative uncharacterize 37.3 2.9E+02 0.01 26.6 18.2 106 288-408 14-125 (169)
90 3fpp_A Macrolide-specific effl 36.7 1.2E+02 0.0041 29.9 8.7 79 440-522 69-147 (341)
91 3i00_A HIP-I, huntingtin-inter 36.2 2E+02 0.0068 26.0 9.3 40 484-523 42-81 (120)
92 1wt6_A Myotonin-protein kinase 34.3 1.6E+02 0.0056 25.4 7.9 21 488-508 51-71 (81)
93 1l8d_A DNA double-strand break 33.3 2.2E+02 0.0076 24.1 12.5 79 445-523 15-98 (112)
94 1ic2_A Tropomyosin alpha chain 32.8 2.1E+02 0.0072 23.6 11.0 55 366-420 18-72 (81)
95 2yy0_A C-MYC-binding protein; 32.6 85 0.0029 24.7 5.5 25 443-467 22-46 (53)
96 4g1a_A AQ-C16C19 peptide; heli 31.9 16 0.00055 26.1 1.1 28 398-425 2-29 (32)
97 3m91_A Proteasome-associated A 31.8 1.4E+02 0.0046 23.6 6.5 37 365-401 13-49 (51)
98 2no2_A HIP-I, huntingtin-inter 31.7 2.7E+02 0.0093 24.6 14.1 39 371-409 4-42 (107)
99 2ke4_A CDC42-interacting prote 31.6 2.5E+02 0.0084 24.6 8.9 30 438-467 60-89 (98)
100 2w6a_A ARF GTPase-activating p 30.4 2E+02 0.0068 23.7 7.3 42 377-418 15-56 (63)
101 3m91_A Proteasome-associated A 30.1 1.5E+02 0.005 23.4 6.4 45 359-405 2-46 (51)
102 3jsv_C NF-kappa-B essential mo 30.0 1.4E+02 0.0048 26.4 6.9 40 486-525 6-45 (94)
103 1j1d_C Troponin I, TNI; THIN f 29.9 2E+02 0.0069 26.6 8.4 66 279-348 31-105 (133)
104 1ci6_A Transcription factor AT 29.2 1.4E+02 0.0047 23.9 6.4 33 445-477 28-60 (63)
105 1j1d_B Troponin T, TNT; THIN f 28.6 3.2E+02 0.011 24.4 9.3 52 290-345 26-86 (106)
106 2ic9_A Nucleocapsid protein; h 28.3 1.7E+02 0.0057 26.0 7.1 16 344-359 2-17 (96)
107 1go4_E MAD1 (mitotic arrest de 28.0 1.1E+02 0.0039 27.1 6.1 26 387-412 17-42 (100)
108 3efg_A Protein SLYX homolog; x 27.9 2.2E+02 0.0074 23.9 7.6 44 374-417 13-56 (78)
109 2f1m_A Acriflavine resistance 27.6 3.7E+02 0.013 25.6 10.3 43 448-490 61-103 (277)
110 1t2k_D Cyclic-AMP-dependent tr 27.2 2.3E+02 0.0077 22.2 8.6 52 354-405 6-59 (61)
111 2oqq_A Transcription factor HY 27.0 1.6E+02 0.0053 22.7 5.8 32 446-477 9-40 (42)
112 2dgc_A Protein (GCN4); basic d 26.8 1.2E+02 0.0041 24.4 5.6 35 444-478 27-61 (63)
113 1joc_A EEA1, early endosomal a 26.3 3.3E+02 0.011 24.3 9.0 44 362-405 5-48 (125)
114 1ses_A Seryl-tRNA synthetase; 26.2 1.9E+02 0.0064 30.7 8.6 75 395-477 27-101 (421)
115 2k48_A Nucleoprotein; viral pr 26.0 3.7E+02 0.013 24.3 10.1 26 398-423 37-62 (107)
116 3a7p_A Autophagy protein 16; c 26.0 4.3E+02 0.015 25.1 12.3 41 373-413 73-113 (152)
117 3vmx_A Voltage-gated hydrogen 25.5 2.2E+02 0.0076 22.4 6.6 36 443-478 7-42 (48)
118 2lw1_A ABC transporter ATP-bin 25.4 3E+02 0.01 23.0 9.8 59 397-467 23-83 (89)
119 1wle_A Seryl-tRNA synthetase; 25.3 3.9E+02 0.013 29.2 11.1 60 363-422 79-149 (501)
120 2oqq_A Transcription factor HY 25.2 2.1E+02 0.0073 22.0 6.3 35 384-418 5-39 (42)
121 2dq0_A Seryl-tRNA synthetase; 25.1 2.8E+02 0.0096 29.8 9.8 61 362-422 39-102 (455)
122 1hjb_A Ccaat/enhancer binding 25.0 2.2E+02 0.0075 24.5 7.2 21 397-417 44-64 (87)
123 1wle_A Seryl-tRNA synthetase; 24.9 2.8E+02 0.0095 30.4 9.8 80 395-477 69-153 (501)
124 3qne_A Seryl-tRNA synthetase, 24.7 1.3E+02 0.0046 32.9 7.3 33 445-477 76-108 (485)
125 1gu4_A CAAT/enhancer binding p 24.5 2.5E+02 0.0085 23.7 7.3 40 381-420 28-67 (78)
126 3qne_A Seryl-tRNA synthetase, 24.3 3.3E+02 0.011 29.8 10.2 61 362-422 41-104 (485)
127 2dq0_A Seryl-tRNA synthetase; 24.2 1.5E+02 0.005 32.0 7.4 77 395-477 30-106 (455)
128 2yy0_A C-MYC-binding protein; 23.7 1.2E+02 0.004 23.9 4.8 28 393-420 23-50 (53)
129 4dzn_A Coiled-coil peptide CC- 23.5 1.5E+02 0.0051 21.3 4.8 26 449-474 4-29 (33)
130 3ajw_A Flagellar FLIJ protein; 23.4 3.7E+02 0.013 23.4 15.1 49 384-432 69-117 (150)
131 4h22_A Leucine-rich repeat fli 22.4 2.4E+02 0.0083 25.2 7.1 55 397-467 31-85 (103)
132 2a3d_A Protein (de novo three- 21.7 3.4E+02 0.012 22.3 7.4 41 434-474 20-71 (73)
133 1gd2_E Transcription factor PA 21.1 1.5E+02 0.005 24.7 5.2 36 442-477 24-59 (70)
134 2wwb_C SEC61BETA, protein tran 20.7 21 0.00073 31.6 0.1 14 593-606 78-91 (96)
135 2zqm_A Prefoldin beta subunit 20.7 3.8E+02 0.013 22.6 12.0 89 389-477 6-107 (117)
136 3lbx_A Spectrin alpha chain, e 20.5 4.7E+02 0.016 23.5 12.4 27 395-421 133-159 (161)
137 1dh3_A Transcription factor CR 20.2 2.4E+02 0.0081 22.1 6.0 35 389-423 15-49 (55)
138 1ytz_I Troponin I; muscle, THI 20.2 2.2E+02 0.0077 27.7 7.0 61 279-345 29-99 (182)
139 2eqb_B RAB guanine nucleotide 20.1 4.6E+02 0.016 23.2 14.1 65 347-421 30-94 (97)
140 1j1e_C Troponin I, TNI; THIN f 20.1 2.5E+02 0.0085 27.3 7.3 67 279-349 31-106 (180)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.73 E-value=9e-05 Score=87.25 Aligned_cols=7 Identities=14% Similarity=0.330 Sum_probs=2.8
Q ss_pred CCCCCCC
Q 006637 157 KPSDGDE 163 (637)
Q Consensus 157 ~~~~~~~ 163 (637)
||.+.+.
T Consensus 685 kPN~~k~ 691 (1184)
T 1i84_S 685 IPNHEKR 691 (1184)
T ss_dssp CCCSSCC
T ss_pred CCCCcCC
Confidence 3444433
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.71 E-value=0.03 Score=51.58 Aligned_cols=18 Identities=6% Similarity=0.086 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006637 503 AQVEALSSEKATLAFRIE 520 (637)
Q Consensus 503 TQLEsLsSEK~AL~lQLE 520 (637)
..+..+....+.+..+++
T Consensus 258 ~~~~~~~~~~~~~~~~~~ 275 (284)
T 1c1g_A 258 DELYAQKLKYKAISEELD 275 (284)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.53 E-value=0.00013 Score=85.89 Aligned_cols=19 Identities=37% Similarity=0.354 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q 006637 307 KERENMVARLEGEKQSLEK 325 (637)
Q Consensus 307 ~eRe~~va~Le~Ek~~lek 325 (637)
.+=+.-+..|+.++..+..
T Consensus 881 ~ele~~l~~Le~e~~~l~~ 899 (1184)
T 1i84_S 881 KELEQKHTQLCEEKNLLQE 899 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555443
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.91 E-value=0.39 Score=47.57 Aligned_cols=137 Identities=15% Similarity=0.129 Sum_probs=63.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhH
Q 006637 350 DAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYL 429 (637)
Q Consensus 350 aALelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa 429 (637)
+.+..++..-...+....+....|+.+.+.+...+.+.+..+.+ ++.++..++..++.++.++....++...+
T Consensus 14 Q~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d-------~~~~~~~~e~~i~~~~~ri~~~~~~l~~v 86 (256)
T 3na7_A 14 SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLA-------LKLQVSKNEQTLQDTNAKIASIQKKMSEI 86 (256)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 33444444444444444445555555555555555555444444 44444444555555555544443222111
Q ss_pred hHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 430 KRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEA 507 (637)
Q Consensus 430 ~Ql~a~~~~EaElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEs 507 (637)
...-|...+..|+.+++.++..++..+..+...|+.+...+ .+++.++..+...|-.+++.++.
T Consensus 87 -------~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l-------~~~~~~l~~~~~~l~~~~~~~~~ 150 (256)
T 3na7_A 87 -------KSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQ-------EDLKKEMLELEKLALELESLVEN 150 (256)
T ss_dssp -------SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 11123333445555555555555555555555555555444 23334444444444444444433
No 5
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.48 E-value=0.43 Score=62.21 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 485 IELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRL 525 (637)
Q Consensus 485 ~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERlerl 525 (637)
..|+..+......|-.=+.-+..|.+|+.-|.-+.+.++..
T Consensus 2059 ~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~ 2099 (3245)
T 3vkg_A 2059 EQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQ 2099 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHH
Confidence 34445555555555555666788899998888777766533
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.38 E-value=0.43 Score=56.52 Aligned_cols=36 Identities=11% Similarity=0.152 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 485 IELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVS 523 (637)
Q Consensus 485 ~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERle 523 (637)
..+|.++.++.+.| |..+..|..|++.|+-|++.++
T Consensus 1008 ~~lee~~~~~~~~L---~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1008 KTIEEWADKYKHET---EQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555433 4556666666666666666665
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.34 E-value=0.34 Score=47.94 Aligned_cols=57 Identities=11% Similarity=0.019 Sum_probs=26.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006637 353 ELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKE 409 (637)
Q Consensus 353 elEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE 409 (637)
+-++..+...-.........|......+...+...++.+......+..++.+++..+
T Consensus 24 ~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~ 80 (256)
T 3na7_A 24 EPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQ 80 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444555555555555555555555444444444444444333
No 8
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.97 E-value=0.85 Score=44.54 Aligned_cols=119 Identities=13% Similarity=0.154 Sum_probs=75.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 389 KKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEG 468 (637)
Q Consensus 389 RkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~a~~~~EaElE~~e~Els~Le~el~~Le~klqk~E~ 468 (637)
..|+.-..+...|..++..|..++++++.++...+... ......++.|+..+......|..+++++|.
T Consensus 49 ~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~------------~~~~~~Lq~el~~l~~~~~~l~~~ireLEq 116 (189)
T 2v71_A 49 AQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQS------------YKQVSVLEDDLSQTRAIKEQLHKYVRELEQ 116 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445566666777777777777776654433110 011223467777777888888888888888
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 469 NIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVS 523 (637)
Q Consensus 469 EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERle 523 (637)
..+.|.++.-..+.+..+++.+|....+..+-=++.|+ ||..|...+.|+.
T Consensus 117 ~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~----EKe~l~~~~QRLk 167 (189)
T 2v71_A 117 ANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD----EKESLLVSVQRLK 167 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCCC----
T ss_pred HhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 77777776655555678889998887776664444444 7888876666653
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.40 E-value=2.3 Score=50.44 Aligned_cols=53 Identities=11% Similarity=0.199 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHhhhhhh
Q 006637 371 AKLETANADLARALAAAQKKLEMETNQVAELRQQTE----LKEVAHEELSQRNSNTH 423 (637)
Q Consensus 371 a~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve----~LE~e~esLRqeL~~a~ 423 (637)
..|...+..|++-|..+|+.++++..+...|.++.. .++.++..|+.++++.+
T Consensus 917 ~~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le 973 (1080)
T 2dfs_A 917 ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLR 973 (1080)
T ss_dssp ----------------------------------CHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 456677888999999999999888887777776643 34555666665555543
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.00 E-value=4.5 Score=53.13 Aligned_cols=138 Identities=14% Similarity=0.099 Sum_probs=67.8
Q ss_pred HHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 006637 300 AKAGDAIKERENMVARLEGEKQSLEKILEERAKQQ----------VKEASELQTSMMETMDAFELEKQRHNNTRMEALQL 369 (637)
Q Consensus 300 ~kA~~~i~eRe~~va~Le~Ek~~leklleEr~~qQ----------~~easelq~~mlaS~aALelEk~aHsaTR~qAlaR 369 (637)
...+.-|.|=..-|+.|+.+.+.++..|++-.++- .++|++-+..+.+-.+.++.+...=++-+.++++-
T Consensus 1923 ~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~d 2002 (3245)
T 3vkg_A 1923 NIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYAD 2002 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557777778888888888888887775543221 12344434333333333333322222333333322
Q ss_pred HHH------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHhhhhhhcchhhHhHHHHhh
Q 006637 370 LAK------LETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAH-------EELSQRNSNTHQTGIYLKRLAASK 436 (637)
Q Consensus 370 Ea~------LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~-------esLRqeL~~a~Q~~~sa~Ql~a~~ 436 (637)
+++ ++++.+++++.|+.++.+|.....++++++++++.|+.++ +.|+.+++.++.+...+..++...
T Consensus 2003 L~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL 2082 (3245)
T 3vkg_A 2003 LEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNL 2082 (3245)
T ss_dssp C-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222 2234444444455555555555555555555544444444 444444444555555555555433
Q ss_pred c
Q 006637 437 G 437 (637)
Q Consensus 437 ~ 437 (637)
+
T Consensus 2083 ~ 2083 (3245)
T 3vkg_A 2083 N 2083 (3245)
T ss_dssp H
T ss_pred h
Confidence 3
No 11
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.16 E-value=3.1 Score=37.56 Aligned_cols=91 Identities=21% Similarity=0.224 Sum_probs=79.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 006637 333 QQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAH 412 (637)
Q Consensus 333 qQ~~easelq~~mlaS~aALelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~ 412 (637)
...++.++-...++.-...|..++++-...-..+..|...|...-.+|..-|..++..+++.......|...-..++.++
T Consensus 34 ~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~ 113 (129)
T 2fxo_A 34 ARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDEC 113 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555566677778888889999888989999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhh
Q 006637 413 EELSQRNSNTH 423 (637)
Q Consensus 413 esLRqeL~~a~ 423 (637)
..|+..|++..
T Consensus 114 ~~Lk~~led~e 124 (129)
T 2fxo_A 114 SELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 12
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=93.61 E-value=5.4 Score=38.39 Aligned_cols=112 Identities=14% Similarity=0.285 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHHHhhchHHHHHHHHHHHHHHHH
Q 006637 375 TANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIAD 454 (637)
Q Consensus 375 ~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~a~~~~EaElE~~e~Els~Le~ 454 (637)
-.++++.++++.....+- +|...+..|+....+|.+++...+ ...+.| +.......+
T Consensus 34 K~~tEl~k~~~~~E~~~r-------ELq~~~~~L~~~k~~Leke~~~LQ------------a~L~qE----r~~r~q~se 90 (168)
T 3o0z_A 34 KSHTEMSKSISQLESLNR-------ELQERNRILENSKSQTDKDYYQLQ------------AILEAE----RRDRGHDSE 90 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHH----HHHHHHHHH
Confidence 345556665555544444 444444444555555555433321 011122 233344556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q 006637 455 KIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLA----FRIEAVS 523 (637)
Q Consensus 455 el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~----lQLERle 523 (637)
.+..|+.++..++.||..++..... ...++| .|++.|. .|.-|++.+. |.|-.++
T Consensus 91 ~~~elq~ri~~L~~El~~~k~~~~k-----~~~e~r--~L~Ekl~-------~lEKe~a~~eid~~~eLKalQ 149 (168)
T 3o0z_A 91 MIGDLQARITSLQEEVKHLKHNLEK-----VEGERK--EAQDMLN-------HSEKEKNNLEIDLNYKLKSLQ 149 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH--HHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH--HHHHHHH-------HHHHHHHhhhHHHHHHHHHHH
Confidence 6677888888888888888877732 444444 7777766 5667778877 7777776
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.60 E-value=2.6 Score=45.00 Aligned_cols=115 Identities=17% Similarity=0.090 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 304 DAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARA 383 (637)
Q Consensus 304 ~~i~eRe~~va~Le~Ek~~leklleEr~~qQ~~easelq~~mlaS~aALelEk~aHsaTR~qAlaREa~LE~enaeLAkA 383 (637)
+.+.+.+..|.+|+.+....++.+....+. ..+.+..+.-.-+.+.........+..+...+.+.++.++....++
T Consensus 456 ~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~----i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 531 (597)
T 3oja_B 456 AEVNELRAEVQQLTNEQIQQEQLLQGLHAE----IDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTE 531 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHh
Confidence 456677778888888877766666333222 2222211110011112222334444445555556666666665555
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006637 384 LAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT 422 (637)
Q Consensus 384 LA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a 422 (637)
+.+.+..++....++..++.+.+..+.....++|++++.
T Consensus 532 ~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~ 570 (597)
T 3oja_B 532 ADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLK 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 555555555555555555555555555555555554443
No 14
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=92.99 E-value=0.56 Score=43.88 Aligned_cols=46 Identities=17% Similarity=0.328 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHH
Q 006637 453 ADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHL 498 (637)
Q Consensus 453 e~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~L 498 (637)
+.++..|+..+..+-..|.-|..+-..++.-...++.+|+.||+.|
T Consensus 100 E~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L~~kL 145 (147)
T 2b9c_A 100 EGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARLKKLV 145 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444444445555788889998888755
No 15
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=91.62 E-value=4.2 Score=36.76 Aligned_cols=106 Identities=17% Similarity=0.178 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 396 NQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRK 475 (637)
Q Consensus 396 ~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~a~~~~EaElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~ 475 (637)
.+..+|..++..|..++++++..+...+.... ...-.++.|+..+...-..|...++++|+..+.+.+
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~------------~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER 70 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSY------------KQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 70 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 35678888999999999999988665432210 111234667777777777888888899888777777
Q ss_pred HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 476 EIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAF 517 (637)
Q Consensus 476 ~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~l 517 (637)
+.-..+.+-.++|.+|... |.+-+-||.=.-||-.|..
T Consensus 71 ~~R~t~~SLeD~E~k~n~a----iErnalLE~El~EKe~L~~ 108 (111)
T 2v66_B 71 AKRATIVSLEDFEQRLNQA----IERNAFLESELDEKESLLV 108 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 6655555678889988765 4555566666667777663
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.16 E-value=3.8 Score=43.73 Aligned_cols=11 Identities=27% Similarity=0.138 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 006637 373 LETANADLARA 383 (637)
Q Consensus 373 LE~enaeLAkA 383 (637)
++...+.++.-
T Consensus 514 ~~~~~~~~~~~ 524 (597)
T 3oja_B 514 LKERQAFKLRE 524 (597)
T ss_dssp HHHHHHHHHHH
T ss_pred HHhhhhhhHHH
Confidence 33333333333
No 17
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.73 E-value=17 Score=34.58 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 484 EIELKRRLGQLTDHLIQKQAQVEALSSEKATLA 516 (637)
Q Consensus 484 q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~ 516 (637)
...++.|..+|-.+|-.|.+.|+++......|.
T Consensus 110 ~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK 142 (154)
T 2ocy_A 110 KYAIEILNKRLTEQLREKDTLLDTLTLQLKNLK 142 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999998766665555
No 18
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=87.85 E-value=5.7 Score=37.33 Aligned_cols=120 Identities=21% Similarity=0.235 Sum_probs=64.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcch----hhHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 393 METNQVAELRQQTELKEVAHEELSQRNSNTHQTG----IYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEG 468 (637)
Q Consensus 393 ee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~----~sa~Ql~a~~~~EaElE~~e~Els~Le~el~~Le~klqk~E~ 468 (637)
++...|++|++-++.+..++++-+.+|+-...-. ..+.|+ +.+.. -++.|+..+.+++..+|-.+.+.+.
T Consensus 8 ~K~~~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQl-qKRn~-----~HQKEi~~Lrae~~~~QRn~~K~~~ 81 (167)
T 4gkw_A 8 DKEDEVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQL-QKRNV-----AHQKEIGKLRAELGTAQRNLEKADQ 81 (167)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHhcc-----HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3445667777777666666666665554432111 011222 11110 0223333333333333333333332
Q ss_pred HHHHHHHHhCCCchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 469 NIEMTRKEIEDPTEVEIELK-RRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVS 523 (637)
Q Consensus 469 EIe~LR~~ls~pT~~q~ELE-~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERle 523 (637)
.+. |+...+ .+--|+ ..|+.|---|-.|-+++|+|+.-.-.|+..||.-.
T Consensus 82 ~Lk--rn~~qQ---nQQSlDiRKLrELEADLKEKDsMVe~LT~TiG~LrKELEdEk 132 (167)
T 4gkw_A 82 LLK--RNSQQQ---NQQSLDMRKLGELEADLKEKDSMVESLTETIGILRKELENEK 132 (167)
T ss_dssp HHH--HHHHHH---HHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH--hhhHHH---hHhhhhHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 221 222211 233444 45688888899999999999999999999998753
No 19
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=87.56 E-value=3.2 Score=37.23 Aligned_cols=35 Identities=14% Similarity=0.479 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHH
Q 006637 465 KLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLI 499 (637)
Q Consensus 465 k~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LI 499 (637)
.+|.+|..+|+.+..-+....+||.++..|++-|.
T Consensus 66 ~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~ 100 (119)
T 3ol1_A 66 EAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 100 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777776555566777777777776554
No 20
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=86.61 E-value=17 Score=32.52 Aligned_cols=42 Identities=10% Similarity=0.092 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006637 379 DLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNS 420 (637)
Q Consensus 379 eLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~ 420 (637)
-|...|..+++.++.-...-+-|.-++.-+....+.++.+.+
T Consensus 17 ~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE 58 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQ 58 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 355566666666666666555555555555555555555443
No 21
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=85.42 E-value=4.3 Score=45.22 Aligned_cols=113 Identities=15% Similarity=0.173 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcch-hhHhHHHHhhchHHHH
Q 006637 364 MEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTG-IYLKRLAASKGVEFER 442 (637)
Q Consensus 364 ~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~-~sa~Ql~a~~~~EaEl 442 (637)
.+++.-...++..+...-.+|...++.++++..+...++++.+.|+..+..+.+.+...++.- +.+.|+.. .+|.|+
T Consensus 462 ~~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~--kme~~~ 539 (592)
T 1f5n_A 462 QTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTE--KMENDR 539 (592)
T ss_dssp HHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 455566666666776677778888889999999888888888888888777777666544222 23345433 344554
Q ss_pred HHHHHHHHH-HHHHHH--------HHHHHHHHHHHHHHHHHHHhC
Q 006637 443 EILEAEYTF-IADKII--------QLEDKAKKLEGNIEMTRKEIE 478 (637)
Q Consensus 443 E~~e~Els~-Le~el~--------~Le~klqk~E~EIe~LR~~ls 478 (637)
+.+.+|+.- ++.++. -++.++..++.||+.|++...
T Consensus 540 ~~~~~e~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ei~~l~~~~~ 584 (592)
T 1f5n_A 540 VQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMR 584 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 443333332 333332 356778899999999988753
No 22
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=84.53 E-value=14 Score=32.24 Aligned_cols=38 Identities=3% Similarity=0.265 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 486 ELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVS 523 (637)
Q Consensus 486 ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERle 523 (637)
.+=..+..+.-+|+.-|..+.+|.....--..+|++++
T Consensus 57 ~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 57 QYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455666777777778888888888777777887774
No 23
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=82.51 E-value=16 Score=38.10 Aligned_cols=32 Identities=25% Similarity=0.226 Sum_probs=17.2
Q ss_pred CCCCCccchHH------HhhhhhhhhcccccccCCccc
Q 006637 45 KSSGSVSLKDQ------LKKRTQEINDYRGKLQSDPNV 76 (637)
Q Consensus 45 k~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 76 (637)
..|--+||.|- +-....+...|.||+-.=|..
T Consensus 86 ~~G~l~~L~~~~~~~~~~~~~~~~~~~~dGk~YglP~~ 123 (471)
T 3mq9_A 86 QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIA 123 (471)
T ss_dssp HTTCBCCCCCCHHHHTTBCHHHHGGGEETTEECEEEEE
T ss_pred HCCceecCCcchHHHhhcCHHHHHhhEECCEEEEEeee
Confidence 44555566542 222233445678888776654
No 24
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=82.00 E-value=9.2 Score=34.65 Aligned_cols=103 Identities=15% Similarity=0.129 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 006637 399 AELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE 478 (637)
Q Consensus 399 aELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~a~~~~EaElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls 478 (637)
++.+.+++.|+.+...|+.+|......+ ..+...|.... ..+..+++.|..+++.-|..|..|+...+
T Consensus 2 ~~t~~~~~~lq~~~~ql~~qL~k~~~~r---~~Le~~w~~k~---------E~~k~qV~~L~~~~q~sE~~L~~Lqq~fs 69 (112)
T 1x79_B 2 AETRDQVKKLQLMLRQANDQLEKTMKDK---QELEDFIKQSS---------EDSSHQISALVLRAQASEILLEELQQGLS 69 (112)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888777777765543211 11111222111 13455667777777888888888887775
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 479 DPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLA 516 (637)
Q Consensus 479 ~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~ 516 (637)
. ...+...+|..||..-=+=..+|.+|-.|+..|.
T Consensus 70 q---~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~ 104 (112)
T 1x79_B 70 Q---AKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQ 104 (112)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHTC------------
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 4 3346666777777665555555555555555443
No 25
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=80.51 E-value=14 Score=33.43 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 006637 377 NADLARALAAAQKKLEMETNQVAELRQQTELKEV 410 (637)
Q Consensus 377 naeLAkALA~~QRkLeee~~rvaELrqkve~LE~ 410 (637)
...|..=|..|+..|..++..|++|+++++.++.
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~ 59 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKI 59 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555566666666666666665554333
No 26
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=79.56 E-value=2 Score=47.60 Aligned_cols=61 Identities=20% Similarity=0.229 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006637 362 TRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT 422 (637)
Q Consensus 362 TR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a 422 (637)
.|++|.....+|+.....+......++..|......+..|.++....+.+...|.++-..+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~ 389 (575)
T 2i1j_A 329 ARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNEL 389 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555566666666666666677666777777777776666666555553333
No 27
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=76.95 E-value=7.1 Score=33.37 Aligned_cols=36 Identities=14% Similarity=0.477 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHH
Q 006637 464 KKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLI 499 (637)
Q Consensus 464 qk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LI 499 (637)
+.+|.+|..+|+.+..-|-...+||.++..|++-|.
T Consensus 45 ~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 45 EEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777887776666667788888877777653
No 28
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=76.14 E-value=44 Score=37.32 Aligned_cols=16 Identities=6% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 006637 507 ALSSEKATLAFRIEAV 522 (637)
Q Consensus 507 sLsSEK~AL~lQLERl 522 (637)
.+..|...++|-||+-
T Consensus 230 kal~ei~Qm~mvLE~~ 245 (562)
T 3ghg_A 230 KALTDMPQMRMELERP 245 (562)
T ss_dssp ----------------
T ss_pred HHhhhhhcEEEEEEec
Confidence 4467888888888886
No 29
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=75.57 E-value=46 Score=30.03 Aligned_cols=92 Identities=21% Similarity=0.235 Sum_probs=62.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 311 NMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKK 390 (637)
Q Consensus 311 ~~va~Le~Ek~~leklleEr~~qQ~~easelq~~mlaS~aALelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRk 390 (637)
.-+++|..|..++-.=+ +++.+++ ..+...|..|...-..++...+.+.-+||..|-+|+++--.+--.
T Consensus 10 ~~~~~L~~E~e~~k~K~----~~~~~e~-------~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~S 78 (111)
T 2v66_B 10 ADNQRLKYEVEALKEKL----EHQYAQS-------YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVS 78 (111)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhh
Confidence 34667777777743322 2333333 344556777777788899999999999999999999986666666
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Q 006637 391 LEMETNQVAELRQQTELKEVAHE 413 (637)
Q Consensus 391 Leee~~rvaELrqkve~LE~e~e 413 (637)
|++-..+....=+..++||.+++
T Consensus 79 LeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 79 LEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666655555555556665555
No 30
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=75.38 E-value=40 Score=29.16 Aligned_cols=13 Identities=23% Similarity=0.256 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 006637 447 AEYTFIADKIIQL 459 (637)
Q Consensus 447 ~Els~Le~el~~L 459 (637)
.++..|+.+|+.+
T Consensus 86 ~evasLnRriqll 98 (101)
T 3u59_A 86 AEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444555555443
No 31
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=75.02 E-value=42 Score=29.23 Aligned_cols=24 Identities=13% Similarity=0.291 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 006637 397 QVAELRQQTELKEVAHEELSQRNS 420 (637)
Q Consensus 397 rvaELrqkve~LE~e~esLRqeL~ 420 (637)
.+..|..++..++.+++.+...|.
T Consensus 45 Ei~sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 45 DIVQLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433333
No 32
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=74.48 E-value=43 Score=29.99 Aligned_cols=13 Identities=31% Similarity=0.342 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHh
Q 006637 465 KLEGNIEMTRKEI 477 (637)
Q Consensus 465 k~E~EIe~LR~~l 477 (637)
.++.||...|+-+
T Consensus 114 ~Ld~EIatYRkLL 126 (129)
T 3tnu_B 114 ALDVEIATYRKLL 126 (129)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhH
Confidence 4555666655544
No 33
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=72.35 E-value=41 Score=30.24 Aligned_cols=13 Identities=31% Similarity=0.491 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHh
Q 006637 465 KLEGNIEMTRKEI 477 (637)
Q Consensus 465 k~E~EIe~LR~~l 477 (637)
.++.||...|+-+
T Consensus 116 ~Ld~EIatYRkLL 128 (131)
T 3tnu_A 116 RLEQEIATYRRLL 128 (131)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhH
Confidence 4555666555544
No 34
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=71.68 E-value=31 Score=29.55 Aligned_cols=38 Identities=16% Similarity=0.227 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006637 378 ADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEEL 415 (637)
Q Consensus 378 aeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esL 415 (637)
.++...+...+..++.-..++..|..+....+...++|
T Consensus 9 Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL 46 (117)
T 2zqm_A 9 QAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEI 46 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666666666666665555555544
No 35
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=71.44 E-value=26 Score=32.30 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 447 AEYTFIADKIIQLEDKAKKLEGNI 470 (637)
Q Consensus 447 ~Els~Le~el~~Le~klqk~E~EI 470 (637)
.++..+..++..|+.++.+++.++
T Consensus 110 ~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 110 KEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 36
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=70.55 E-value=80 Score=34.96 Aligned_cols=49 Identities=16% Similarity=0.098 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHh
Q 006637 370 LAKLETANADLARALAAAQKKLEMETN----QVAELRQQTELKEVAHEELSQR 418 (637)
Q Consensus 370 Ea~LE~enaeLAkALA~~QRkLeee~~----rvaELrqkve~LE~e~esLRqe 418 (637)
++.-|+..+.|.+.|++.|..=++... .+++...+-+..+++-+.++++
T Consensus 4 ~a~yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNeaikkr 56 (497)
T 3iox_A 4 EADYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKR 56 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 344455555555555555554443322 2334444444444444544444
No 37
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=70.00 E-value=37 Score=30.72 Aligned_cols=78 Identities=17% Similarity=0.205 Sum_probs=43.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 312 MVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQK 389 (637)
Q Consensus 312 ~va~Le~Ek~~leklleEr~~qQ~~easelq~~mlaS~aALelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QR 389 (637)
-++++.+++..||.-+.+-.+.=+.+.++|+...-.|...|..=+++++.++.+++.+.+.|-..-.....-|.+.|+
T Consensus 21 qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~ 98 (112)
T 1x79_B 21 QLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQK 98 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666666655555555566666666666666666666666666666666666555554444444444443
No 38
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=68.80 E-value=57 Score=28.15 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 439 EFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKE 476 (637)
Q Consensus 439 EaElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ 476 (637)
+.++..++..+..+..+.+.++.++..+..+++.++.-
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555566666666666667777777777777777653
No 39
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=68.44 E-value=60 Score=34.87 Aligned_cols=46 Identities=17% Similarity=0.037 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006637 378 ADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH 423 (637)
Q Consensus 378 aeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~ 423 (637)
|+++..|...|+.+......+..+.+++.-+-.+...|.+-+++.-
T Consensus 23 C~i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~ 68 (409)
T 1m1j_C 23 CGIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIY 68 (409)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6789999999999998888888888888888888888888777763
No 40
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=67.98 E-value=75 Score=29.24 Aligned_cols=49 Identities=4% Similarity=0.011 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 370 LAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 418 (637)
Q Consensus 370 Ea~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqe 418 (637)
...|+.+..++.+.+....-.+.....+..++.++++.+..+..+|+.+
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444
No 41
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=67.61 E-value=70 Score=28.72 Aligned_cols=12 Identities=25% Similarity=0.437 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 006637 464 KKLEGNIEMTRK 475 (637)
Q Consensus 464 qk~E~EIe~LR~ 475 (637)
++++.++..|+.
T Consensus 107 kkle~e~~~Lk~ 118 (129)
T 2fxo_A 107 RKLEDECSELKR 118 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444443333
No 42
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=67.22 E-value=54 Score=27.59 Aligned_cols=94 Identities=13% Similarity=0.104 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-cchhhHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Q 006637 382 RALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH-QTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLE 460 (637)
Q Consensus 382 kALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~-Q~~~sa~Ql~a~~~~EaElE~~e~Els~Le~el~~Le 460 (637)
..+...+..++.-..++..|+.+....+...++|..==.+.. .+ .+..+.-....+.-...++.....++..|..|+
T Consensus 8 ~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~--~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le 85 (107)
T 1fxk_A 8 AQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYK--SSGNILIRVAKDELTEELQEKLETLQLREKTIE 85 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEE--EETTEEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHH--HHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555566665555555555544332100100 00 011111112222223334555556666666667
Q ss_pred HHHHHHHHHHHHHHHHh
Q 006637 461 DKAKKLEGNIEMTRKEI 477 (637)
Q Consensus 461 ~klqk~E~EIe~LR~~l 477 (637)
.++..++.++..++..+
T Consensus 86 ~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 86 RQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77677776666666554
No 43
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=66.05 E-value=67 Score=27.93 Aligned_cols=56 Identities=27% Similarity=0.335 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 451 FIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIE 520 (637)
Q Consensus 451 ~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLE 520 (637)
..+.+|..|+.+++.++.+++.+. .+|....+.|-..-..+....++..+|..++.
T Consensus 41 ~~E~Ei~sL~kk~~~lE~eld~~e--------------e~L~ea~~kLee~ek~~~~aE~ev~~L~Rriq 96 (101)
T 3u1c_A 41 QLEDDIVQLEKQLRVTEDSRDQVL--------------EELHKSEDSLLFAEENAAKAESEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566665555433 33344444444444455555667777765544
No 44
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=65.72 E-value=67 Score=27.85 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 485 IELKRRLGQLTDHLIQKQAQVEAL 508 (637)
Q Consensus 485 ~ELE~RL~qLTE~LIqKQTQLEsL 508 (637)
.++...+.+|-.++-.=|++|+.|
T Consensus 70 ~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 70 LELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555555555555
No 45
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=65.05 E-value=1e+02 Score=29.69 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHh
Q 006637 367 LQLLAKLETANADLARALAAAQKKLEMET-------NQVAELRQQTELKEVAHEELSQR 418 (637)
Q Consensus 367 laREa~LE~enaeLAkALA~~QRkLeee~-------~rvaELrqkve~LE~e~esLRqe 418 (637)
+.+...|+..-..|.+.++..|-.|+.+. ..+.+|..++..|+.+++.++.+
T Consensus 54 q~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~ 112 (168)
T 3o0z_A 54 QERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHN 112 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555554444 44555555555555555555554
No 46
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=64.75 E-value=28 Score=31.66 Aligned_cols=103 Identities=17% Similarity=0.161 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 006637 307 KERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALA- 385 (637)
Q Consensus 307 ~eRe~~va~Le~Ek~~leklleEr~~qQ~~easelq~~mlaS~aALelEk~aHsaTR~qAlaREa~LE~enaeLAkALA- 385 (637)
++|+.++..|.-|.+.|-.=++.-..++.....+|.+....-.+.|+. ....+.+|..=-..|.++.+.+.+...
T Consensus 11 d~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e----~r~~~q~a~~e~e~Lr~e~~~l~~~~~~ 86 (120)
T 3i00_A 11 DEKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAE----QQHLRQQAADDCEFLRAELDELRRQRED 86 (120)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 567777777777766644444333233333333333333332222222 222344444444444444444322222
Q ss_pred --HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 006637 386 --AAQKKLEMETNQVAELRQQTELKEVAHE 413 (637)
Q Consensus 386 --~~QRkLeee~~rvaELrqkve~LE~e~e 413 (637)
.+|+.+.+.-.++...++++..|...+.
T Consensus 87 ~~~~q~~~~e~E~kAqa~Eerf~KLKe~yt 116 (120)
T 3i00_A 87 TEKAQRSLSEIERKAQANEQRYSKLKEKYS 116 (120)
T ss_dssp ------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233334433344344444444443333
No 47
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=64.57 E-value=40 Score=33.64 Aligned_cols=37 Identities=8% Similarity=0.103 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 006637 443 EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 479 (637)
Q Consensus 443 E~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~ 479 (637)
+..+.++...+.++..++.++...+.+++.++..+..
T Consensus 118 ~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~ 154 (369)
T 4dk0_A 118 NTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGY 154 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3345566666677777777777888888888877754
No 48
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=63.31 E-value=32 Score=29.72 Aligned_cols=70 Identities=21% Similarity=0.330 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 447 AEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED-----PTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEA 521 (637)
Q Consensus 447 ~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~-----pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLER 521 (637)
.+++.|.++++.+=++++.+|++-..|...+.. ++....-++.-|..| +.+|+.+..|++.+..++..
T Consensus 9 e~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~L-------r~~i~~~~~ek~~l~~e~dn 81 (93)
T 3s4r_A 9 VELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMREL-------RRQVDQLTNDKARVEVERDN 81 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 345666666665555555555555555444321 111111223333222 57889999999999999888
Q ss_pred HH
Q 006637 522 VS 523 (637)
Q Consensus 522 le 523 (637)
+.
T Consensus 82 l~ 83 (93)
T 3s4r_A 82 LA 83 (93)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 49
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=62.98 E-value=47 Score=28.41 Aligned_cols=55 Identities=16% Similarity=0.265 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006637 368 QLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT 422 (637)
Q Consensus 368 aREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a 422 (637)
.|...||........++..++..++.-..+|+.|+-+++.+..++..++++..+.
T Consensus 6 ~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~ 60 (83)
T 2xdj_A 6 DRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3555555545556677888999999999999999999998888888887764443
No 50
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=62.92 E-value=1.5e+02 Score=30.94 Aligned_cols=15 Identities=13% Similarity=0.313 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 006637 492 GQLTDHLIQKQAQVE 506 (637)
Q Consensus 492 ~qLTE~LIqKQTQLE 506 (637)
..+-|.-.+||.-.+
T Consensus 470 ~~~~~~~~~~~~~~~ 484 (487)
T 3oja_A 470 ATLQELVVREQNLAS 484 (487)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 344444444554433
No 51
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=62.83 E-value=76 Score=28.76 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006637 503 AQVEALSSEKATLAFRIEAVSRL 525 (637)
Q Consensus 503 TQLEsLsSEK~AL~lQLERlerl 525 (637)
+.=|.+.+||..|..||+.+++.
T Consensus 83 adREkl~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 83 HAREKLVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhHHHHHHHHHHHHHHH
Confidence 44577888888888888887654
No 52
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=62.10 E-value=77 Score=27.28 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006637 445 LEAEYTFIADKIIQLEDKAKKL 466 (637)
Q Consensus 445 ~e~Els~Le~el~~Le~klqk~ 466 (637)
+..|...+.++...++.+++.+
T Consensus 53 L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 53 LERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666655544
No 53
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=60.47 E-value=13 Score=41.24 Aligned_cols=50 Identities=16% Similarity=0.210 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006637 372 KLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSN 421 (637)
Q Consensus 372 ~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~ 421 (637)
.|+.+..++...++......+.+..++..|++++...+..+...+++|..
T Consensus 409 ~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l~~ 458 (575)
T 2i1j_A 409 KLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLA 458 (575)
T ss_dssp ---------------------------------CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556665656666666666666666666665555555555555444
No 54
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=59.66 E-value=24 Score=30.67 Aligned_cols=58 Identities=17% Similarity=0.306 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh-----HHHHH---HHHHHHHHHHHHHHHHHHH
Q 006637 450 TFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEV-----EIELK---RRLGQLTDHLIQKQAQVEA 507 (637)
Q Consensus 450 s~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~-----q~ELE---~RL~qLTE~LIqKQTQLEs 507 (637)
..++.++..|+.+...++++|+.++..+..+.+. ++.+= +-|+..++.|+.+=+.+..
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~rg 69 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRDIALGMIGKVAEHEK 69 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC
Confidence 4577788888888899999999999999887652 22221 4455566677755444433
No 55
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=58.39 E-value=73 Score=27.10 Aligned_cols=37 Identities=19% Similarity=0.217 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 439 EFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRK 475 (637)
Q Consensus 439 EaElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~ 475 (637)
|.+.-.++..+..+.=....|+.++..+..||.=||+
T Consensus 48 E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk 84 (86)
T 3swk_A 48 ENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 84 (86)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333334444444444445677777777777776653
No 56
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=58.13 E-value=1.8e+02 Score=30.24 Aligned_cols=35 Identities=23% Similarity=0.234 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 006637 382 RALAAAQKKLEMETNQVAELRQQTELKEVAHEELS 416 (637)
Q Consensus 382 kALA~~QRkLeee~~rvaELrqkve~LE~e~esLR 416 (637)
+-.+..+.++++..+++..|.++++.++++...+|
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 436 AEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444455666666666666666666555555444
No 57
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=56.50 E-value=1.3e+02 Score=28.33 Aligned_cols=51 Identities=20% Similarity=0.101 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 006637 363 RMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHE 413 (637)
Q Consensus 363 R~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~e 413 (637)
=..+..|+..++.++..|..-|-.+....++-.+.|.-|+..+..++..+.
T Consensus 65 eekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~ 115 (155)
T 2efr_A 65 AEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELY 115 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666555555555555555555555544444444444
No 58
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=56.44 E-value=60 Score=27.00 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006637 454 DKIIQLEDKAKKLEGNIEMT 473 (637)
Q Consensus 454 ~el~~Le~klqk~E~EIe~L 473 (637)
.+|..|+.+++.++.+++.+
T Consensus 41 ~ev~~L~kKiq~lE~eld~~ 60 (81)
T 1ic2_A 41 DELVALQKKLKGTEDELDKY 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333
No 59
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=56.29 E-value=65 Score=27.12 Aligned_cols=57 Identities=12% Similarity=0.176 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 455 KIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEK 512 (637)
Q Consensus 455 el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK 512 (637)
++..|..++..++.+|..+...|..|..-..+. .++..|+..|-..+..|+.+...=
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~~d~-~~~~~l~~~l~~~e~eLe~~~erW 79 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFSQPH-EQTQKVLADMAAAEQELEQAFERW 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccCCH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666667777777777787765311111 345667777776677777666543
No 60
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=55.88 E-value=96 Score=26.44 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 445 LEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 477 (637)
Q Consensus 445 ~e~Els~Le~el~~Le~klqk~E~EIe~LR~~l 477 (637)
.+.++..+..++..|..++..++.+++.++..+
T Consensus 69 ~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 69 YHLDLNNSKNTLAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555444
No 61
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=55.52 E-value=29 Score=29.29 Aligned_cols=45 Identities=16% Similarity=0.164 Sum_probs=35.4
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 006637 435 SKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 479 (637)
Q Consensus 435 ~~~~EaElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~ 479 (637)
....+..+.....|++.....|..|+.++..++.+|..|+..+..
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556667888888888899999999999999999988743
No 62
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=55.15 E-value=45 Score=28.16 Aligned_cols=47 Identities=19% Similarity=0.176 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006637 377 NADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH 423 (637)
Q Consensus 377 naeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~ 423 (637)
.-+|..+|...-..|..+...+.+|+.++..++.+...|+.+|++++
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677777777777888888999999999999999999999988874
No 63
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=54.79 E-value=1.1e+02 Score=27.00 Aligned_cols=53 Identities=9% Similarity=0.097 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006637 367 LQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRN 419 (637)
Q Consensus 367 laREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL 419 (637)
..+...|+.++.....-+...+..+..+..+....+.....++.++++|-..|
T Consensus 11 re~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 11 KEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666666666666555555555555555555554443
No 64
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=54.07 E-value=3.3e+02 Score=32.11 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006637 492 GQLTDHLIQKQAQVEALSSEK 512 (637)
Q Consensus 492 ~qLTE~LIqKQTQLEsLsSEK 512 (637)
+.+.+.=|.|+.+|..+.+.|
T Consensus 774 ~~~~ele~~k~~~la~ie~~k 794 (861)
T 2zuo_A 774 RAQLELEVSKAQQLANVEAKK 794 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 445555566666666555443
No 65
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=53.25 E-value=71 Score=28.23 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 006637 372 KLETANADLARALAAAQKKLEMETNQVAELR 402 (637)
Q Consensus 372 ~LE~enaeLAkALA~~QRkLeee~~rvaELr 402 (637)
.|.+......+||+..|..++.-...++..+
T Consensus 6 ~L~~~L~~aEeaL~~kq~~id~lke~~~q~~ 36 (94)
T 3jsv_C 6 DLRQQLQQAEEALVAKQELIDKLKEEAEQHK 36 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3444445555566665555555544444443
No 66
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=52.12 E-value=1.8e+02 Score=31.41 Aligned_cols=120 Identities=10% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHHHhhchHHH---------HHHHHHHHHHHHHHH
Q 006637 386 AAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFE---------REILEAEYTFIADKI 456 (637)
Q Consensus 386 ~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~a~~~~EaE---------lE~~e~Els~Le~el 456 (637)
++|.-|+... ..+...+..|...++.+.+--...++-...+..+......++. .+.++..|.+|+.+|
T Consensus 53 rLqg~Ldk~e---r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V 129 (390)
T 1deq_A 53 RMKGLIDEVD---QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKV 129 (390)
T ss_pred hHHHHHHHhh---hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H-------HHHHHHHHHHHHHHHHHHHhCC-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 457 I-------QLEDKAKKLEGNIEMTRKEIED-----PTEVEIELKRRLGQLTDHLIQKQAQVEALSS 510 (637)
Q Consensus 457 ~-------~Le~klqk~E~EIe~LR~~ls~-----pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsS 510 (637)
. .|+.-|..+..+|++|..++.- ...-...|+-++..=.-.=++|| |+.+.+
T Consensus 130 ~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQ--L~qv~a 193 (390)
T 1deq_A 130 IEQVQRINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQ--LEQVIA 193 (390)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHHH--HHhhhh
No 67
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=51.24 E-value=1.2e+02 Score=26.19 Aligned_cols=32 Identities=13% Similarity=0.242 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 006637 448 EYTFIADKIIQLEDKAKKLEGNIEMTRKEIED 479 (637)
Q Consensus 448 Els~Le~el~~Le~klqk~E~EIe~LR~~ls~ 479 (637)
.+.+.+++|+.|+.++...+.||..|..++..
T Consensus 48 KLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~~ 79 (81)
T 3qh9_A 48 KLKATKAEVAQLQEQVALKDAEIERLHSQLSR 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 34445566777777777888888888877653
No 68
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=50.63 E-value=1.2e+02 Score=25.83 Aligned_cols=38 Identities=21% Similarity=0.222 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 486 ELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVS 523 (637)
Q Consensus 486 ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERle 523 (637)
.|......|..+|...+...+.|...++.|..+|..++
T Consensus 46 ~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 46 TLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555588888888888888988888887775
No 69
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=49.99 E-value=47 Score=32.83 Aligned_cols=36 Identities=8% Similarity=0.265 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 006637 443 EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE 478 (637)
Q Consensus 443 E~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls 478 (637)
+..+.++...+.++..++.++...+.+++.++..+.
T Consensus 117 ~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~ 152 (341)
T 3fpp_A 117 DNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLD 152 (341)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334455555556666666666666666666666654
No 70
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=49.33 E-value=91 Score=27.08 Aligned_cols=38 Identities=18% Similarity=0.194 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 006637 308 ERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSM 345 (637)
Q Consensus 308 eRe~~va~Le~Ek~~leklleEr~~qQ~~easelq~~m 345 (637)
-|++-+..|++.+++||.-|.|-+..=..+.+.+|..+
T Consensus 9 ~~~~~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i 46 (95)
T 3mov_A 9 SRENLYFQGQKESRACLERIQELEDLLAKEKDNSRRML 46 (95)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888899999999988888666655555555555444
No 71
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=49.26 E-value=99 Score=29.39 Aligned_cols=38 Identities=11% Similarity=0.171 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 486 ELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVS 523 (637)
Q Consensus 486 ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERle 523 (637)
.|+.+|..|.+-|-.|...++.|..|..+|.+++.-++
T Consensus 79 ~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE 116 (152)
T 3a7p_A 79 SKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQ 116 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666665543
No 72
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=47.53 E-value=69 Score=27.40 Aligned_cols=37 Identities=35% Similarity=0.408 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 006637 363 RMEALQLLAKLETANADLARALAAAQKKLEMETNQVA 399 (637)
Q Consensus 363 R~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rva 399 (637)
+..+.+|...+|..|.+|..-+..++..|++-..+-.
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~ 44 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERE 44 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777777777766554333
No 73
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=46.62 E-value=1.4e+02 Score=25.66 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 488 KRRLGQLTDHLIQKQAQVEALSSEKATLAFRIE 520 (637)
Q Consensus 488 E~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLE 520 (637)
+.+|......|-..-..+....++.++|..++.
T Consensus 64 ~e~l~~a~~kLe~~ek~~~~AE~evasLnRriq 96 (101)
T 3u59_A 64 SESVKEAQEKLEQAEKKATDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555556666777777775554
No 74
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=46.52 E-value=3.5e+02 Score=30.23 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=32.4
Q ss_pred ccHHHHH--HHHHHHHHHH------HHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 006637 276 ESESERE--REERRKLKEK------ILAEKAAAKAGDAIKERENMVARLEGEKQSLEKILEERA 331 (637)
Q Consensus 276 ~se~e~~--r~~~r~~~~~------~~ae~~a~kA~~~i~eRe~~va~Le~Ek~~leklleEr~ 331 (637)
+++.+.+ +||.|++++- +-|||...+|-+-|.+=+..||++++-.....+++.+|.
T Consensus 292 t~~elkqrqeee~r~~qew~~~hp~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~ 355 (551)
T 2b5u_A 292 SPDQVKQRQDEENRRQQEWDATHPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRK 355 (551)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3444444 4444444433 557777777777776666677776664455555654443
No 75
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=46.29 E-value=1.4e+02 Score=25.63 Aligned_cols=63 Identities=14% Similarity=0.156 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 451 FIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIE 520 (637)
Q Consensus 451 ~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLE 520 (637)
.|+++|+.+-+.+..++-||+.|+.... .|......+...--.+..+.+.|..|.++|.-||.
T Consensus 10 qLE~KIq~avdtI~lLqmEieELKekN~-------~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELKEKNN-------SLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554444444455555555554432 22222222222222344555666666666663333
No 76
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=45.78 E-value=32 Score=32.09 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 484 EIELKRRLGQLTDHLIQKQAQVEALSSEKATL 515 (637)
Q Consensus 484 q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL 515 (637)
...++.|..+|-.+|-.|.+-|+++......|
T Consensus 98 ~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~L 129 (135)
T 2e7s_A 98 KYAIEILNKRLTEQLREKDMLLDTLTLQLKNL 129 (135)
T ss_dssp HHHHHHHHHHHHHTTTHHHHCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888899999998888888765544444
No 77
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=45.37 E-value=1.1e+02 Score=27.43 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006637 396 NQVAELRQQTELKEVAHEELS 416 (637)
Q Consensus 396 ~rvaELrqkve~LE~e~esLR 416 (637)
.++.+|+..+..|+.++++++
T Consensus 38 ~Ei~elrr~iq~L~~el~~l~ 58 (131)
T 3tnu_A 38 SEISELRRTMQNLEIELQSQL 58 (131)
T ss_dssp ---CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555443
No 78
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=45.34 E-value=1.8e+02 Score=26.65 Aligned_cols=29 Identities=21% Similarity=0.278 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 449 YTFIADKIIQLEDKAKKLEGNIEMTRKEI 477 (637)
Q Consensus 449 ls~Le~el~~Le~klqk~E~EIe~LR~~l 477 (637)
+..++.+|..|..+|++...|+++||+..
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44445555555555555556666665544
No 79
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=42.44 E-value=2.3e+02 Score=26.87 Aligned_cols=97 Identities=9% Similarity=0.102 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHHHhhchHHHHHHHHHHHHHHHH
Q 006637 375 TANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIAD 454 (637)
Q Consensus 375 ~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~a~~~~EaElE~~e~Els~Le~ 454 (637)
.+......-+...+..+.++..+....+.....++.++++|-.-|.+ .+|.|.+... .+....+.....|..
T Consensus 51 ~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFe------EAN~MVa~ar--~~~~~~e~r~~~L~~ 122 (154)
T 2ocy_A 51 RELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD------EANNMVADAR--KEKYAIEILNKRLTE 122 (154)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH------HHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 33444445555555556666666666666666666666655554433 3455443222 222223333444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Q 006637 455 KIIQLEDKAKKLEGNIEMTRKEIED 479 (637)
Q Consensus 455 el~~Le~klqk~E~EIe~LR~~ls~ 479 (637)
.+..-+..+..++.++..|+.-+.+
T Consensus 123 ql~e~~~~l~~lq~ql~~LK~v~~~ 147 (154)
T 2ocy_A 123 QLREKDTLLDTLTLQLKNLKKVMHS 147 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554455556666666666665544
No 80
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=41.02 E-value=19 Score=36.62 Aligned_cols=70 Identities=14% Similarity=0.139 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHhCCC-c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 006637 463 AKKLEGNIEMTRKEIEDP-T-EVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDENKPV 532 (637)
Q Consensus 463 lqk~E~EIe~LR~~ls~p-T-~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERlerl~ee~~s~ 532 (637)
+..++.|+..|+..+.+. . +.+.-.+.|++.|..++.+.+++.+.|..+...++.+|++++...+.+++.
T Consensus 26 ~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sP 97 (251)
T 3m9b_A 26 LEQLRREAAVLREQLENAVGSHAPTRSARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQP 97 (251)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhhhcccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 444556666777666321 0 222222888999999999999999999999999999999987665665554
No 81
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=40.13 E-value=2.2e+02 Score=26.11 Aligned_cols=35 Identities=34% Similarity=0.455 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 485 IELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRI 519 (637)
Q Consensus 485 ~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQL 519 (637)
.+|+..|..|.+.|-.+=+.+|.|..++..|..++
T Consensus 74 qeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 74 EELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 45666666666777777777777777777766444
No 82
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=40.05 E-value=1.6e+02 Score=26.58 Aligned_cols=15 Identities=20% Similarity=0.339 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHh
Q 006637 345 MMETMDAFELEKQRH 359 (637)
Q Consensus 345 mlaS~aALelEk~aH 359 (637)
||+.+..|+.|+..|
T Consensus 33 tM~~ieeLQ~Ei~~~ 47 (107)
T 2k48_A 33 TMSTLQELQENITAH 47 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 566666666666666
No 83
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=40.00 E-value=1.3e+02 Score=27.95 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 006637 485 IELKRRLGQLTDHLI 499 (637)
Q Consensus 485 ~ELE~RL~qLTE~LI 499 (637)
.+|+..|+.++..|-
T Consensus 104 ~eLEeeL~~~~~nlK 118 (147)
T 2b9c_A 104 AELEEELKTVTNNLK 118 (147)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555544
No 84
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=39.93 E-value=1.7e+02 Score=24.63 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 006637 365 EALQLLAKLETANADLARALAAAQKKLEMETNQV 398 (637)
Q Consensus 365 qAlaREa~LE~enaeLAkALA~~QRkLeee~~rv 398 (637)
.+.+|...+|.+|.+|..-+..++..|++-..+-
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q 37 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQ 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777777777777777776655433
No 85
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=39.29 E-value=3.5e+02 Score=28.15 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=17.3
Q ss_pred HHHHhHHHHHHHHHHHHHHhHHHHHHHH
Q 006637 315 RLEGEKQSLEKILEERAKQQVKEASELQ 342 (637)
Q Consensus 315 ~Le~Ek~~leklleEr~~qQ~~easelq 342 (637)
+|+.++.++|..++...+.+.....++|
T Consensus 364 ~l~~~~~~le~~~~~~~~~~~~~~~~~~ 391 (487)
T 3oja_A 364 TLEQKKKALDEQVSNGRRAHAELDGTLQ 391 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 6777888877777655555544444443
No 86
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=38.98 E-value=1.2e+02 Score=28.22 Aligned_cols=65 Identities=22% Similarity=0.265 Sum_probs=40.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006637 352 FELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNT 422 (637)
Q Consensus 352 LelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a 422 (637)
|..++..-..-|.+|.....+++.+..+|..+|= ++-..-|+..+.+...++.....|+.++.+.
T Consensus 51 L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLF------eEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~ 115 (135)
T 2e7s_A 51 LREDIAKENELRTKAEEEADKLNKEVEDLTASLF------DEANNLVADARMEKYAIEILNKRLTEQLREK 115 (135)
T ss_dssp HHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHH------HHHHHHHHHTTHHHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344466788999999999999999999872 3333334444444444455555555554443
No 87
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=38.80 E-value=74 Score=26.77 Aligned_cols=17 Identities=35% Similarity=0.243 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006637 368 QLLAKLETANADLARAL 384 (637)
Q Consensus 368 aREa~LE~enaeLAkAL 384 (637)
.|...||...|=....|
T Consensus 14 ~Ri~~LE~klAfqE~tI 30 (78)
T 3efg_A 14 ARLVELETRLSFQEQAL 30 (78)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444544444444333
No 88
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=38.06 E-value=1.5e+02 Score=29.50 Aligned_cols=79 Identities=8% Similarity=0.041 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 441 EREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIE 520 (637)
Q Consensus 441 ElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLE 520 (637)
++...++++..++.++...+.++...+.++++++.-...-..+..+++.. -..|..-+++++.+......++.+|+
T Consensus 71 ~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a----~~~~~~a~a~~~~~~~~l~~~~~~l~ 146 (369)
T 4dk0_A 71 TLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNTA----KATLNNAKAEMDVVQENIKQAEIEVN 146 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666666666666666677766665543334444432 22333345666666666666666666
Q ss_pred HHH
Q 006637 521 AVS 523 (637)
Q Consensus 521 Rle 523 (637)
.++
T Consensus 147 ~a~ 149 (369)
T 4dk0_A 147 TAE 149 (369)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 89
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=37.28 E-value=2.9e+02 Score=26.65 Aligned_cols=106 Identities=25% Similarity=0.198 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----hHHHHHHHHHHHHH--HHHHHHHHHHHhHH
Q 006637 288 KLKEKILAEKAAAKAGDAIKERENMVARLEGEKQSLEKILEERAKQ----QVKEASELQTSMME--TMDAFELEKQRHNN 361 (637)
Q Consensus 288 ~~~~~~~ae~~a~kA~~~i~eRe~~va~Le~Ek~~leklleEr~~q----Q~~easelq~~mla--S~aALelEk~aHsa 361 (637)
+.|+..-||++-..+.. -||-||+.|.++-++|-+- +++ ...|+.-|-. |..+. +...++=+
T Consensus 14 k~~r~e~aek~~~~k~~----------~le~ek~~l~~~e~~r~k~~~h~~~k-~~qlre~~d~gtt~~~i-~~m~~yI~ 81 (169)
T 3k29_A 14 KKDRVDRAEKVVKEKRR----------LLELEQEKLRERESERDKVKNHYMQK-IRQLREQLDDGTTSDAI-LKMKAYIK 81 (169)
T ss_dssp HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCcHHH-HHHHHHHH
Confidence 44445667776654433 3788888888888777631 121 4445544411 11110 00000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 006637 362 TRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELK 408 (637)
Q Consensus 362 TR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~L 408 (637)
=...|++.++...++..+.+..|++.|+.....+...+++++.+
T Consensus 82 ---llrErea~lEqkVaeq~e~Ve~e~q~Le~ar~el~qArke~eKf 125 (169)
T 3k29_A 82 ---VVAIQLSEEEEKVNKQKENVLAASKELERAEVELTKRRKEEEKT 125 (169)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 03468888999999999999999999999888888887777655
No 90
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=36.70 E-value=1.2e+02 Score=29.92 Aligned_cols=79 Identities=13% Similarity=0.099 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 440 FEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRI 519 (637)
Q Consensus 440 aElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQL 519 (637)
.++...+.++..++..+...+.++...+.++++++.-...-..++.+++.. -..+...|.+++.+.++...++.+|
T Consensus 69 ~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a----~~~~~~~~a~l~~~~a~l~~a~a~l 144 (341)
T 3fpp_A 69 NQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNA----ATEMAVKQAQIGTIDAQIKRNQASL 144 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHHHH----HHHHHHTHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555666666666666666666666666666665544444555433 2233445566666666666555555
Q ss_pred HHH
Q 006637 520 EAV 522 (637)
Q Consensus 520 ERl 522 (637)
+.+
T Consensus 145 ~~a 147 (341)
T 3fpp_A 145 DTA 147 (341)
T ss_dssp TTT
T ss_pred HHH
Confidence 554
No 91
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=36.22 E-value=2e+02 Score=26.04 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 484 EIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVS 523 (637)
Q Consensus 484 q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERle 523 (637)
...|+.|+.+|--.|.....+......|+.-|+.+++.+.
T Consensus 42 v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 42 VLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888888888888888888888888888888774
No 92
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=34.28 E-value=1.6e+02 Score=25.37 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006637 488 KRRLGQLTDHLIQKQAQVEAL 508 (637)
Q Consensus 488 E~RL~qLTE~LIqKQTQLEsL 508 (637)
+.|...|-..+-.++.+++.|
T Consensus 51 e~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 51 EARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444443
No 93
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=33.30 E-value=2.2e+02 Score=24.11 Aligned_cols=79 Identities=20% Similarity=0.219 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 445 LEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE-DPTEV----EIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRI 519 (637)
Q Consensus 445 ~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls-~pT~~----q~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQL 519 (637)
.+.++..+...+..++.++..++..+..+...-. =|++. .......+......+-.-+.+++.|..+...+..++
T Consensus 15 ~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~ 94 (112)
T 1l8d_A 15 IEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELEREL 94 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555533211 15441 111112222233333333455555555555555555
Q ss_pred HHHH
Q 006637 520 EAVS 523 (637)
Q Consensus 520 ERle 523 (637)
+.++
T Consensus 95 ~~l~ 98 (112)
T 1l8d_A 95 RRID 98 (112)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 94
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=32.76 E-value=2.1e+02 Score=23.65 Aligned_cols=55 Identities=7% Similarity=0.055 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006637 366 ALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNS 420 (637)
Q Consensus 366 AlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~ 420 (637)
|..|...++...-+.......+...+...+.++..|+..+...+..+......|.
T Consensus 18 a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 18 ALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444443333
No 95
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=32.58 E-value=85 Score=24.69 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 443 EILEAEYTFIADKIIQLEDKAKKLE 467 (637)
Q Consensus 443 E~~e~Els~Le~el~~Le~klqk~E 467 (637)
+.++.|...|+.++..|..++..+.
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555444444444433333
No 96
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=31.93 E-value=16 Score=26.10 Aligned_cols=28 Identities=21% Similarity=0.176 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 006637 398 VAELRQQTELKEVAHEELSQRNSNTHQT 425 (637)
Q Consensus 398 vaELrqkve~LE~e~esLRqeL~~a~Q~ 425 (637)
++.|+|+++.||..|.+..|.+....|+
T Consensus 2 iaaleqkiaaleqkcaaceqkiaaleqk 29 (32)
T 4g1a_A 2 IAALEQKIAALEQKCAACEQKIAALEQK 29 (32)
T ss_dssp CHHHHHHHHHHHHHTSSHHHHHHHHC--
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4667777777777777777776666554
No 97
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=31.78 E-value=1.4e+02 Score=23.63 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 006637 365 EALQLLAKLETANADLARALAAAQKKLEMETNQVAEL 401 (637)
Q Consensus 365 qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaEL 401 (637)
++..+...|-..|..|+.+|..+...|.....+++.|
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566777777777888887777776665555544
No 98
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=31.67 E-value=2.7e+02 Score=24.58 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006637 371 AKLETANADLARALAAAQKKLEMETNQVAELRQQTELKE 409 (637)
Q Consensus 371 a~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE 409 (637)
+.|--.|++..|-|+.++....+......+|..++..++
T Consensus 4 i~LLRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 4 ADLLRKNAEVTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678999999999999988888888888887776555
No 99
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=31.63 E-value=2.5e+02 Score=24.57 Aligned_cols=30 Identities=10% Similarity=-0.039 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 438 VEFEREILEAEYTFIADKIIQLEDKAKKLE 467 (637)
Q Consensus 438 ~EaElE~~e~Els~Le~el~~Le~klqk~E 467 (637)
++.++......|..|..++..++..|..++
T Consensus 60 ~~~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 60 LEPQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666666777777777777777776665
No 100
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=30.37 E-value=2e+02 Score=23.73 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 377 NADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 418 (637)
Q Consensus 377 naeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqe 418 (637)
-.++-+||++.+-+++....--..|.+++..|+..+..|+.+
T Consensus 15 ylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQse 56 (63)
T 2w6a_A 15 YLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAE 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhh
Confidence 345666777777777666666666666666666666666554
No 101
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=30.13 E-value=1.5e+02 Score=23.45 Aligned_cols=45 Identities=24% Similarity=0.272 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 006637 359 HNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQT 405 (637)
Q Consensus 359 HsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkv 405 (637)
|.-|+. ..|...|+.++..|++==.+.-.-|..-..++..|++++
T Consensus 2 ~~~~~~--~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 2 HAPTRS--ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp -----C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555665 444455555555554443444444444444444444433
No 102
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=30.00 E-value=1.4e+02 Score=26.39 Aligned_cols=40 Identities=28% Similarity=0.434 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 486 ELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRL 525 (637)
Q Consensus 486 ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERlerl 525 (637)
+|-.+|...-+.|..||..++.|..+...+...+|++.-+
T Consensus 6 ~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vL 45 (94)
T 3jsv_C 6 DLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVL 45 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555556666666655555555555555433
No 103
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=29.87 E-value=2e+02 Score=26.64 Aligned_cols=66 Identities=24% Similarity=0.381 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 006637 279 SEREREERRKLKEKILAEKAAAKAG---------DAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMET 348 (637)
Q Consensus 279 ~e~~r~~~r~~~~~~~ae~~a~kA~---------~~i~eRe~~va~Le~Ek~~leklleEr~~qQ~~easelq~~mlaS 348 (637)
=+++.++....|++||+||.-.--+ ..++|=-+-+..|++|+=.||.-+ +.|..|..+|...+...
T Consensus 31 l~kE~e~k~eeKkkiLaER~~pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE~kv----kkq~yEI~dL~~rV~Dl 105 (133)
T 1j1d_C 31 LEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKV----TKNITEIADLTQKIFDL 105 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----HHcchHHHHHHHHHHHH
Confidence 3455555666668899999732211 333344455678888888855444 67777888887765443
No 104
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=29.18 E-value=1.4e+02 Score=23.93 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 445 LEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 477 (637)
Q Consensus 445 ~e~Els~Le~el~~Le~klqk~E~EIe~LR~~l 477 (637)
+..++..|+.+-..|..++..++.|+..|+.-+
T Consensus 28 le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 28 LTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555566666666666666666543
No 105
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=28.56 E-value=3.2e+02 Score=24.36 Aligned_cols=52 Identities=37% Similarity=0.365 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHh---------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 006637 290 KEKILAEKAAAKAG---------DAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSM 345 (637)
Q Consensus 290 ~~~~~ae~~a~kA~---------~~i~eRe~~va~Le~Ek~~leklleEr~~qQ~~easelq~~m 345 (637)
|++|||||.-..-+ ..++|=-+-+..|++||=.||.-+ +.|..|..+|...+
T Consensus 26 KkkiLaER~kpL~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv----~kq~yEI~eL~~rV 86 (106)
T 1j1d_B 26 KKKILAERRKVLAIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKF----KQQKYEINVLRNRI 86 (106)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHH----HhhhHHHHHHHHHH
Confidence 37899999954433 233333345677888888865544 66777887776654
No 106
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=28.26 E-value=1.7e+02 Score=26.02 Aligned_cols=16 Identities=25% Similarity=0.243 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 006637 344 SMMETMDAFELEKQRH 359 (637)
Q Consensus 344 ~mlaS~aALelEk~aH 359 (637)
+||+.+..|+.|+..|
T Consensus 2 ~~M~~i~eLq~e~~~~ 17 (96)
T 2ic9_A 2 SHMSTLKEVQDNITLH 17 (96)
T ss_dssp --CCTHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHH
Confidence 3555566666666555
No 107
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=27.96 E-value=1.1e+02 Score=27.07 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=11.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Q 006637 387 AQKKLEMETNQVAELRQQTELKEVAH 412 (637)
Q Consensus 387 ~QRkLeee~~rvaELrqkve~LE~e~ 412 (637)
..++++....+...|++..+.||.++
T Consensus 17 lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 17 LRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 108
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=27.94 E-value=2.2e+02 Score=23.92 Aligned_cols=44 Identities=16% Similarity=0.144 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 374 ETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQ 417 (637)
Q Consensus 374 E~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRq 417 (637)
+....+|+--||=.+.-+++...-++.-..++..|+.++..|..
T Consensus 13 e~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~ 56 (78)
T 3efg_A 13 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 56 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333
No 109
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=27.59 E-value=3.7e+02 Score=25.59 Aligned_cols=43 Identities=9% Similarity=0.065 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHH
Q 006637 448 EYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRR 490 (637)
Q Consensus 448 Els~Le~el~~Le~klqk~E~EIe~LR~~ls~pT~~q~ELE~R 490 (637)
++..++.++...+..+...+.++++.+.-...-..++.+++..
T Consensus 61 ~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a 103 (277)
T 2f1m_A 61 TYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQA 103 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHH
Confidence 3444444454455555556666666665555433345555543
No 110
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=27.25 E-value=2.3e+02 Score=22.24 Aligned_cols=52 Identities=27% Similarity=0.348 Sum_probs=0.0
Q ss_pred HHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 006637 354 LEKQRHNNTR--MEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQT 405 (637)
Q Consensus 354 lEk~aHsaTR--~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkv 405 (637)
+|++..+++| .--..+...|+.+...|...-...+..+.....++..|++.+
T Consensus 6 ~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 6 LERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 111
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=27.00 E-value=1.6e+02 Score=22.72 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 446 EAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 477 (637)
Q Consensus 446 e~Els~Le~el~~Le~klqk~E~EIe~LR~~l 477 (637)
+.....++...+.|+.++.-++.|-++||+-+
T Consensus 9 E~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 9 ENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 44555677777888999999999999999765
No 112
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=26.75 E-value=1.2e+02 Score=24.45 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 006637 444 ILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE 478 (637)
Q Consensus 444 ~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls 478 (637)
+....+..|+.++..|+..-..+..+|+.|+..+.
T Consensus 27 RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 27 RKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666777777777777777777777776653
No 113
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=26.32 E-value=3.3e+02 Score=24.27 Aligned_cols=44 Identities=27% Similarity=0.249 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 006637 362 TRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQT 405 (637)
Q Consensus 362 TR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkv 405 (637)
-|.+.+.|..+.|.+...|.+-++..++.+++...-..+|....
T Consensus 5 e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~ 48 (125)
T 1joc_A 5 ERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGREN 48 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 35667777777777777777777777777766555555554433
No 114
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=26.17 E-value=1.9e+02 Score=30.73 Aligned_cols=75 Identities=13% Similarity=0.180 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 395 TNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTR 474 (637)
Q Consensus 395 ~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~a~~~~EaElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR 474 (637)
..++-+|.++...+..+.++|+.+.-..... +-...+ .+.+.+.++...+.+++..|+.++..+++++..+-
T Consensus 27 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~------i~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (421)
T 1ses_A 27 LEALLALDREVQELKKRLQEVQTERNQVAKR------VPKAPP--EEKEALIARGKALGEEAKRLEEALREKEARLEALL 98 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------SSSSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhcc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666653332211 111111 23344577888888999999999999998887766
Q ss_pred HHh
Q 006637 475 KEI 477 (637)
Q Consensus 475 ~~l 477 (637)
..+
T Consensus 99 ~~i 101 (421)
T 1ses_A 99 LQV 101 (421)
T ss_dssp TTC
T ss_pred HhC
Confidence 555
No 115
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=26.02 E-value=3.7e+02 Score=24.27 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006637 398 VAELRQQTELKEVAHEELSQRNSNTH 423 (637)
Q Consensus 398 vaELrqkve~LE~e~esLRqeL~~a~ 423 (637)
+.+|+.++...|.++...+|+|.++.
T Consensus 37 ieeLQ~Ei~~~E~QL~iArQKLkdAe 62 (107)
T 2k48_A 37 LQELQENITAHEQQLVTARQKLKDAE 62 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555543
No 116
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=26.01 E-value=4.3e+02 Score=25.08 Aligned_cols=41 Identities=5% Similarity=0.122 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 006637 373 LETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHE 413 (637)
Q Consensus 373 LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~e 413 (637)
|+.+...+..-|....-.+.++...+..|.++...|..+..
T Consensus 73 L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n 113 (152)
T 3a7p_A 73 LQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENN 113 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333334333333333333
No 117
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=25.50 E-value=2.2e+02 Score=22.42 Aligned_cols=36 Identities=28% Similarity=0.186 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 006637 443 EILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIE 478 (637)
Q Consensus 443 E~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~ls 478 (637)
..+++-+..+..++..|+..-.++++||++|++-+.
T Consensus 7 ~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 7 LRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 345666667777888888888899999999987663
No 118
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=25.35 E-value=3e+02 Score=23.01 Aligned_cols=59 Identities=17% Similarity=0.128 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh--cchhhHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 397 QVAELRQQTELKEVAHEELSQRNSNTH--QTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLE 467 (637)
Q Consensus 397 rvaELrqkve~LE~e~esLRqeL~~a~--Q~~~sa~Ql~a~~~~EaElE~~e~Els~Le~el~~Le~klqk~E 467 (637)
+...|..+++.||..+..|...|.+.. +. . -..+..+-.++..++.++..+..+|-.++
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~~--d----------~~~~~~l~~~l~~~e~eLe~~~erWeeLe 83 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFSQ--P----------HEQTQKVLADMAAAEQELEQAFERWEYLE 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGS--C----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccC--C----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666655532 10 0 01112234556666777777777776554
No 119
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=25.27 E-value=3.9e+02 Score=29.20 Aligned_cols=60 Identities=15% Similarity=0.100 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006637 363 RMEALQLLAKLETANADLARALAAAQK-----------KLEMETNQVAELRQQTELKEVAHEELSQRNSNT 422 (637)
Q Consensus 363 R~qAlaREa~LE~enaeLAkALA~~QR-----------kLeee~~rvaELrqkve~LE~e~esLRqeL~~a 422 (637)
|.+++.+...|+++...+.+.|....+ ..+....++.+|.++++.++.++..+..++...
T Consensus 79 ~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 79 LRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666665433 233455677788888888888888777777664
No 120
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=25.24 E-value=2.1e+02 Score=21.97 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 384 LAAAQKKLEMETNQVAELRQQTELKEVAHEELSQR 418 (637)
Q Consensus 384 LA~~QRkLeee~~rvaELrqkve~LE~e~esLRqe 418 (637)
+...+....+...+.++|++++--|+.+-.-|||-
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33344444444455555555555555555555543
No 121
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=25.06 E-value=2.8e+02 Score=29.79 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006637 362 TRMEALQLLAKLETANADLARALAAAQKK---LEMETNQVAELRQQTELKEVAHEELSQRNSNT 422 (637)
Q Consensus 362 TR~qAlaREa~LE~enaeLAkALA~~QRk---Leee~~rvaELrqkve~LE~e~esLRqeL~~a 422 (637)
.|.+.+.+...|+++...+++.|....++ .+....++.+|..+++.++.++..+..++...
T Consensus 39 ~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 39 EWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666777777777777777765433 44556778888888888888888888887765
No 122
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=25.01 E-value=2.2e+02 Score=24.54 Aligned_cols=21 Identities=33% Similarity=0.366 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006637 397 QVAELRQQTELKEVAHEELSQ 417 (637)
Q Consensus 397 rvaELrqkve~LE~e~esLRq 417 (637)
++.+|+++-..|..+++.|..
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~ 64 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSR 64 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 123
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=24.89 E-value=2.8e+02 Score=30.38 Aligned_cols=80 Identities=13% Similarity=0.100 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHHHhhc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 395 TNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKG-----VEFEREILEAEYTFIADKIIQLEDKAKKLEGN 469 (637)
Q Consensus 395 ~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~a~~~-----~EaElE~~e~Els~Le~el~~Le~klqk~E~E 469 (637)
..++-+|.++...+..+.++|+.+.-...... .++..... ...+.+.+.++...+.++|..|+.++..++++
T Consensus 69 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i---~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~ 145 (501)
T 1wle_A 69 LPGIISTWQELRQLREQIRSLEEEKEAVTEAV---RALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQ 145 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666655532222111 11100100 00233446778888888888888888888888
Q ss_pred HHHHHHHh
Q 006637 470 IEMTRKEI 477 (637)
Q Consensus 470 Ie~LR~~l 477 (637)
+..+=..+
T Consensus 146 l~~~l~~i 153 (501)
T 1wle_A 146 FYLRALRL 153 (501)
T ss_dssp HHHHHTTS
T ss_pred HHHHHHhC
Confidence 87766555
No 124
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=24.75 E-value=1.3e+02 Score=32.89 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 445 LEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 477 (637)
Q Consensus 445 ~e~Els~Le~el~~Le~klqk~E~EIe~LR~~l 477 (637)
+.+|...+.++|..|+.++..++.++..+=..+
T Consensus 76 l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~i 108 (485)
T 3qne_A 76 LIAEKEKLSNEKKEIIEKEAEADKNLRSKINQV 108 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 355666677777777777777776665544443
No 125
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=24.52 E-value=2.5e+02 Score=23.70 Aligned_cols=40 Identities=23% Similarity=0.180 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006637 381 ARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNS 420 (637)
Q Consensus 381 AkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~ 420 (637)
-++..+.....++...++.+|+.+-..|..++..|+.++.
T Consensus 28 krSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~ 67 (78)
T 1gu4_A 28 RKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELS 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444444444444433
No 126
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=24.26 E-value=3.3e+02 Score=29.81 Aligned_cols=61 Identities=7% Similarity=-0.032 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006637 362 TRMEALQLLAKLETANADLARALAAAQKK---LEMETNQVAELRQQTELKEVAHEELSQRNSNT 422 (637)
Q Consensus 362 TR~qAlaREa~LE~enaeLAkALA~~QRk---Leee~~rvaELrqkve~LE~e~esLRqeL~~a 422 (637)
.|.+++.....|+++...+.+.|+...+. .+....++.+|.++++.++.++..+..++...
T Consensus 41 ~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 41 EWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666777777777777777665442 44566778888888888888888888877664
No 127
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=24.22 E-value=1.5e+02 Score=31.96 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 395 TNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTR 474 (637)
Q Consensus 395 ~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~a~~~~EaElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR 474 (637)
..++-+|.++...+..+.++|+.+.-... +++-.......+.+.+.++...+.++|..|+.++..+++++..+-
T Consensus 30 ~~~~~~l~~~~r~~~~~~~~l~~~~n~~s------k~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 30 VDEILKLDTEWRTKLKEINRLRHERNKIA------VEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666666665532222 122111111112233567788888999999999999998888777
Q ss_pred HHh
Q 006637 475 KEI 477 (637)
Q Consensus 475 ~~l 477 (637)
..+
T Consensus 104 ~~i 106 (455)
T 2dq0_A 104 WRL 106 (455)
T ss_dssp TTS
T ss_pred HhC
Confidence 666
No 128
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.68 E-value=1.2e+02 Score=23.91 Aligned_cols=28 Identities=14% Similarity=0.215 Sum_probs=15.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006637 393 METNQVAELRQQTELKEVAHEELSQRNS 420 (637)
Q Consensus 393 ee~~rvaELrqkve~LE~e~esLRqeL~ 420 (637)
....+.++|+.++..|..++++|+.+|.
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555555555555555555543
No 129
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=23.53 E-value=1.5e+02 Score=21.31 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 449 YTFIADKIIQLEDKAKKLEGNIEMTR 474 (637)
Q Consensus 449 ls~Le~el~~Le~klqk~E~EIe~LR 474 (637)
+..++++|+.|...+..+.=||..++
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444445555544
No 130
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=23.43 E-value=3.7e+02 Score=23.39 Aligned_cols=49 Identities=10% Similarity=-0.058 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHH
Q 006637 384 LAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRL 432 (637)
Q Consensus 384 LA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql 432 (637)
+-..+.-+......+....+.+...+..++..+..+..+.++......+
T Consensus 69 l~~~~~fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~L 117 (150)
T 3ajw_A 69 WINYQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQTL 117 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556666666666666666676666666665554443333
No 131
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=22.37 E-value=2.4e+02 Score=25.23 Aligned_cols=55 Identities=16% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 397 QVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLE 467 (637)
Q Consensus 397 rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~a~~~~EaElE~~e~Els~Le~el~~Le~klqk~E 467 (637)
+|+-|+.+++.++.....++++ ...---|.+.++-.+..++.++..|+.+++.+.
T Consensus 31 qVdlLKD~LEe~eE~~aql~Re----------------~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD 85 (103)
T 4h22_A 31 QVDTLKDMLLELEEQLAESRRQ----------------YEEKNKEFEREKHAHSILQFQFAEVKEALKQRE 85 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 132
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=21.71 E-value=3.4e+02 Score=22.31 Aligned_cols=41 Identities=22% Similarity=0.286 Sum_probs=26.4
Q ss_pred HhhchHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
Q 006637 434 ASKGVEFEREILEAEYTFIADKII-----------QLEDKAKKLEGNIEMTR 474 (637)
Q Consensus 434 a~~~~EaElE~~e~Els~Le~el~-----------~Le~klqk~E~EIe~LR 474 (637)
+.-+.|+|+.-.+.|+...+.+++ .|...+..+++|++..|
T Consensus 20 alggseaelaafekeiaafeselqaykgkgnpevealrkeaaairdelqayr 71 (73)
T 2a3d_A 20 ALGGSEAELAAFEKEIAAFESELQAYKGKGNPEVEALRKEAAAIRDELQAYR 71 (73)
T ss_dssp HCSSGGGTHHHHHHHHHHHHHHHHHSSSCCSSTTTHHHHHHHHHHHHHHHHT
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhh
Confidence 455666776666777777666664 45566666677766654
No 133
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=21.13 E-value=1.5e+02 Score=24.67 Aligned_cols=36 Identities=11% Similarity=0.204 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 442 REILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 477 (637)
Q Consensus 442 lE~~e~Els~Le~el~~Le~klqk~E~EIe~LR~~l 477 (637)
+++.++.+..|+.++..|+.....+..|++.||..+
T Consensus 24 ReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i 59 (70)
T 1gd2_E 24 RKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKV 59 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666655555555555555544
No 134
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=20.73 E-value=21 Score=31.59 Aligned_cols=14 Identities=29% Similarity=0.624 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHH
Q 006637 593 LWSLVYLVCLHLWV 606 (637)
Q Consensus 593 llfiiYlllLHLwV 606 (637)
++|++.+++||+|.
T Consensus 78 l~Fi~~Vi~Lhi~~ 91 (96)
T 2wwb_C 78 LLFIASVFMLHIWG 91 (96)
T ss_dssp HHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHhh
Confidence 47888889999874
No 135
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=20.71 E-value=3.8e+02 Score=22.56 Aligned_cols=89 Identities=13% Similarity=0.138 Sum_probs=44.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhH-------------hHHHHhhchHHHHHHHHHHHHHHHHH
Q 006637 389 KKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYL-------------KRLAASKGVEFEREILEAEYTFIADK 455 (637)
Q Consensus 389 RkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa-------------~Ql~a~~~~EaElE~~e~Els~Le~e 455 (637)
..++...++...|.+++..+..+...+..++....--...+ ..+.-....+.-...++..+..++..
T Consensus 6 ~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~ 85 (117)
T 2zqm_A 6 PQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVR 85 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 34556666666677776666666666666655543111111 11111222222233344555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 006637 456 IIQLEDKAKKLEGNIEMTRKEI 477 (637)
Q Consensus 456 l~~Le~klqk~E~EIe~LR~~l 477 (637)
|..|+.++..++.++..++..+
T Consensus 86 i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 86 LNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6566666666665555555444
No 136
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=20.52 E-value=4.7e+02 Score=23.51 Aligned_cols=27 Identities=19% Similarity=0.096 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006637 395 TNQVAELRQQTELKEVAHEELSQRNSN 421 (637)
Q Consensus 395 ~~rvaELrqkve~LE~e~esLRqeL~~ 421 (637)
..++.+|..+...|......-+++|..
T Consensus 133 ~~rl~eL~~~W~~L~~~~~~R~~~L~e 159 (161)
T 3lbx_A 133 KAHIEELRHLWDLLLELTLEKGDQLLR 159 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666555555555543
No 137
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=20.24 E-value=2.4e+02 Score=22.10 Aligned_cols=35 Identities=11% Similarity=0.116 Sum_probs=21.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006637 389 KKLEMETNQVAELRQQTELKEVAHEELSQRNSNTH 423 (637)
Q Consensus 389 RkLeee~~rvaELrqkve~LE~e~esLRqeL~~a~ 423 (637)
+.-.-+...+.+|+.+|..|+.+-..|+.++....
T Consensus 15 rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 15 ESRRKKKEYVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445666777777777777777776665544
No 138
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=20.21 E-value=2.2e+02 Score=27.66 Aligned_cols=61 Identities=21% Similarity=0.269 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 006637 279 SEREREERRKLKEKILAEKAAAKAG----------DAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSM 345 (637)
Q Consensus 279 ~e~~r~~~r~~~~~~~ae~~a~kA~----------~~i~eRe~~va~Le~Ek~~leklleEr~~qQ~~easelq~~m 345 (637)
-++|.++....|++|||||. +.+ ...++=-+-+..|++|+=.||.-+ +.|..|..+|...+
T Consensus 29 L~~E~e~k~eeKkkiLaER~--kPLnid~se~~L~e~ckELh~~I~~LEeEKYDlE~kv----kkq~yEI~dL~~rV 99 (182)
T 1ytz_I 29 IEKEAAAKEVEKQNYLAEHS--PPLSLPGSMQELQELSKKLHAKIDSVDEERYDTEVKL----QKTNKELEDLSQKL 99 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHS--CCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHhC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HhhhHHHHHHHHHH
Confidence 34555555566677999987 333 333344444566777777754444 56666766665443
No 139
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.10 E-value=4.6e+02 Score=23.20 Aligned_cols=65 Identities=23% Similarity=0.298 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006637 347 ETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSN 421 (637)
Q Consensus 347 aS~aALelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~~ 421 (637)
.-.+.|..| ..-|.+|.....+++.+..+|..+| .++-..-|+..+.+...++...+.|+.+|.+
T Consensus 30 ~L~~~l~eE----~~~R~~aE~~~~~ie~ElEeLTasL------FeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 30 RLREDIAKE----NELRTKAEEEADKLNKEVEDLTASL------FDEANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445555 5678899999999999999999997 3344444555555555566666666665544
No 140
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=20.09 E-value=2.5e+02 Score=27.28 Aligned_cols=67 Identities=24% Similarity=0.367 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006637 279 SEREREERRKLKEKILAEKAAAKAG---------DAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETM 349 (637)
Q Consensus 279 ~e~~r~~~r~~~~~~~ae~~a~kA~---------~~i~eRe~~va~Le~Ek~~leklleEr~~qQ~~easelq~~mlaS~ 349 (637)
-+++.++....|++|||||.-.--+ ..+++=-+-+..|++|+=.||.-+ +.|..|..+|...+....
T Consensus 31 L~~E~e~k~eEKkkiLaER~kPLnid~Lse~~L~e~ckELh~~I~~LEeEKYDlE~kv----kkqdyEI~dL~~rV~DLr 106 (180)
T 1j1e_C 31 LEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKV----TKNITEIADLTQKIFDLR 106 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HhcchhHHHHHHHHHHHH
Confidence 3455566666668899999733211 333333345677888888855444 677778888877765543
Done!