Query 006637
Match_columns 637
No_of_seqs 123 out of 140
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 04:56:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006637.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006637hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxka_ a.2.5.1 (A:) Prefoldin 65.5 20 0.0015 28.9 9.7 33 445-477 70-102 (107)
2 d1fxkc_ a.2.5.1 (C:) Prefoldin 46.3 71 0.0052 25.9 11.0 33 371-403 4-36 (133)
3 d1gs9a_ a.24.1.1 (A:) Apolipop 44.6 81 0.0059 26.1 10.4 53 376-428 8-63 (144)
4 d1seta1 a.2.7.1 (A:1-110) Sery 41.3 78 0.0056 25.2 9.4 75 395-477 27-101 (110)
5 d1ivsa1 a.2.7.3 (A:797-862) Va 40.5 64 0.0047 23.8 8.6 28 453-480 3-30 (66)
6 d1s35a2 a.7.1.1 (A:1169-1273) 27.5 1.2E+02 0.0085 22.8 8.9 71 350-420 33-103 (105)
7 d1qvra2 c.37.1.20 (A:149-535) 19.4 2E+02 0.014 27.7 9.5 23 396-418 253-275 (387)
8 d1cuna2 a.7.1.1 (A:116-219) Sp 13.4 2.4E+02 0.018 20.8 9.3 73 348-420 28-100 (104)
9 d1ivsa1 a.2.7.3 (A:797-862) Va 11.0 2.7E+02 0.02 20.0 6.6 24 439-462 3-26 (66)
10 d2es4d1 a.137.15.1 (D:53-332) 10.4 4.9E+02 0.036 22.6 13.5 8 289-296 116-123 (280)
No 1
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=65.51 E-value=20 Score=28.90 Aligned_cols=33 Identities=9% Similarity=0.191 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006637 445 LEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEI 477 (637)
Q Consensus 445 ~e~Els~Le~el~~Le~klqk~E~EIe~LR~~l 477 (637)
+...+.+++..+..|+.++..++.+++.++..+
T Consensus 70 l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l 102 (107)
T d1fxka_ 70 LQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666666666554
No 2
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=46.30 E-value=71 Score=25.91 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 006637 371 AKLETANADLARALAAAQKKLEMETNQVAELRQ 403 (637)
Q Consensus 371 a~LE~enaeLAkALA~~QRkLeee~~rvaELrq 403 (637)
.+|......|..-|..++..+..-...+.++..
T Consensus 4 ~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~ 36 (133)
T d1fxkc_ 4 AEIVAQLNIYQSQVELIQQQMEAVRATISELEI 36 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555554444444444444433
No 3
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=44.58 E-value=81 Score=26.11 Aligned_cols=53 Identities=17% Similarity=0.068 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHH--HHHHHH-HHHHHHHHHHHHhhhhhhcchhh
Q 006637 376 ANADLARALAAAQKKLEMETNQVA--ELRQQT-ELKEVAHEELSQRNSNTHQTGIY 428 (637)
Q Consensus 376 enaeLAkALA~~QRkLeee~~rva--ELrqkv-e~LE~e~esLRqeL~~a~Q~~~s 428 (637)
..-.+-.++...+...++-...+. ++.+++ ..+....+.+...+.....++.+
T Consensus 8 ~~d~f~~y~~~l~~~a~~~~~~l~~sel~~el~~~l~e~~~~l~~~~~~l~~~l~p 63 (144)
T d1gs9a_ 8 ALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTP 63 (144)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555554443332 444443 23344444555555555544443
No 4
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=41.29 E-value=78 Score=25.17 Aligned_cols=75 Identities=16% Similarity=0.209 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 395 TNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTR 474 (637)
Q Consensus 395 ~~rvaELrqkve~LE~e~esLRqeL~~a~Q~~~sa~Ql~a~~~~EaElE~~e~Els~Le~el~~Le~klqk~E~EIe~LR 474 (637)
...+-.|.++...+..+.+.|+.+--... .++-...+ .+.+.+.++...+..++..++.++..++.++..+-
T Consensus 27 ld~i~~ld~~rr~l~~~~e~l~~~rN~~s------k~i~k~~~--~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~l 98 (110)
T d1seta1 27 LEALLALDREVQELKKRLQEVQTERNQVA------KRVPKAPP--EEKEALIARGKALGEEAKRLEEALREKEARLEALL 98 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHGGGCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhhc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666532221 12211111 22233567778888888888888888888887766
Q ss_pred HHh
Q 006637 475 KEI 477 (637)
Q Consensus 475 ~~l 477 (637)
..+
T Consensus 99 l~i 101 (110)
T d1seta1 99 LQV 101 (110)
T ss_dssp TTC
T ss_pred HcC
Confidence 555
No 5
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=40.46 E-value=64 Score=23.76 Aligned_cols=28 Identities=18% Similarity=0.263 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 006637 453 ADKIIQLEDKAKKLEGNIEMTRKEIEDP 480 (637)
Q Consensus 453 e~el~~Le~klqk~E~EIe~LR~~ls~p 480 (637)
..++..|+.++..++.+|+.+..-|+.|
T Consensus 3 ~~E~~RL~K~l~kl~~~i~~~~~kL~N~ 30 (66)
T d1ivsa1 3 EEWRRRQEKRLKELLALAERSQRKLASP 30 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCh
Confidence 4456677888889999999999999874
No 6
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.49 E-value=1.2e+02 Score=22.82 Aligned_cols=71 Identities=10% Similarity=-0.023 Sum_probs=35.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006637 350 DAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNS 420 (637)
Q Consensus 350 aALelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~ 420 (637)
..++.-...|..-..+...+...+..=+..-..-+...--..+.-..++..|.+.+..+...+..-+++|.
T Consensus 33 ~~v~~l~k~h~~l~~~l~~~~~~v~~l~~~a~~L~~~~~~~~~~I~~~~~~l~~rw~~l~~~~~~r~~~L~ 103 (105)
T d1s35a2 33 EAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSDKIKEKVQLIEDRHRKNNEKAQEASVLLR 103 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44555555666666666666555543333222222221122333345556666666666666665555554
No 7
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=19.44 E-value=2e+02 Score=27.75 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 006637 396 NQVAELRQQTELKEVAHEELSQR 418 (637)
Q Consensus 396 ~rvaELrqkve~LE~e~esLRqe 418 (637)
..+..++.++..++.+..+|..+
T Consensus 253 ~el~~ler~I~qLe~E~~aL~ke 275 (387)
T d1qvra2 253 EEIDALERKKLQLEIEREALKKE 275 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 35566666666677777766665
No 8
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=13.39 E-value=2.4e+02 Score=20.80 Aligned_cols=73 Identities=12% Similarity=0.082 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006637 348 TMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNS 420 (637)
Q Consensus 348 S~aALelEk~aHsaTR~qAlaREa~LE~enaeLAkALA~~QRkLeee~~rvaELrqkve~LE~e~esLRqeL~ 420 (637)
....++..+..|..-..+...++..++.-+..-..-+....-..+.-..++..|...+..|...+..-+..|+
T Consensus 28 d~~~v~~ll~~h~~~~~ei~~~~~~~~~l~~~g~~L~~~~~~~~~~I~~~~~~l~~~w~~L~~~~~~R~~~Le 100 (104)
T d1cuna2 28 TLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLD 100 (104)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777787777777777666655444433322222212222333444555555544444444444433
No 9
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=11.04 E-value=2.7e+02 Score=20.03 Aligned_cols=24 Identities=17% Similarity=-0.053 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006637 439 EFEREILEAEYTFIADKIIQLEDK 462 (637)
Q Consensus 439 EaElE~~e~Els~Le~el~~Le~k 462 (637)
+.|.+++..++..++..+..++.+
T Consensus 3 ~~E~~RL~K~l~kl~~~i~~~~~k 26 (66)
T d1ivsa1 3 EEWRRRQEKRLKELLALAERSQRK 26 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444443
No 10
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) {Burkholderia glumae [TaxId: 337]}
Probab=10.43 E-value=4.9e+02 Score=22.61 Aligned_cols=8 Identities=38% Similarity=0.688 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 006637 289 LKEKILAE 296 (637)
Q Consensus 289 ~~~~~~ae 296 (637)
.|.+.+.+
T Consensus 116 l~~~~~~e 123 (280)
T d2es4d1 116 LADRTLGE 123 (280)
T ss_dssp HHHHHTGG
T ss_pred HHHHHHHH
Confidence 33445554
Done!