BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006638
(637 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D9Y|A Chain A, Solution Structure Of The Ph Domain Of Pepp-3 From Human
Length = 117
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 15/106 (14%)
Query: 12 GWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTD-NGR 70
GWL+ + G++ KR+F+L+D CL YK EKEE + ++ RV
Sbjct: 15 GWLFKQASS--GVKQWNKRWFVLVDRCLFYYK----DEKEESILGSIPLLSFRVAAVQPS 68
Query: 71 ESINRKVLFVFTLYNSLDHN--EKLKLGARSPEEAAKWIRSLQEAA 114
++I+RK F +H A SPEE WI+++ EAA
Sbjct: 69 DNISRKHTF------KAEHAGVRTYFFSAESPEEQEAWIQAMGEAA 108
>pdb|2YRY|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Family A Member 6 From Human
Length = 122
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 15/106 (14%)
Query: 12 GWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTD-NGR 70
GWL+ + G++ KR+F+L+D CL YK EKEE + ++ RV
Sbjct: 26 GWLFKQASS--GVKQWNKRWFVLVDRCLFYYK----DEKEESILGSIPLLSFRVAAVQPS 79
Query: 71 ESINRKVLFVFTLYNSLDHN--EKLKLGARSPEEAAKWIRSLQEAA 114
++I+RK F +H A SPEE WI+++ EAA
Sbjct: 80 DNISRKHTF------KAEHAGVRTYFFSAESPEEQEAWIQAMGEAA 119
>pdb|2DKP|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Protein Family A Member 5 From Human
Length = 128
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 23/118 (19%)
Query: 12 GWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVT-DNGR 70
GWLY + GM++ +KR+F+L D CL Y+ EKEE + +++ ++
Sbjct: 25 GWLYK--QDSTGMKLWKKRWFVLSDLCLFYYR----DEKEEGILGSILLPSFQIALLTSE 78
Query: 71 ESINRKVLF------VFTLYNSLDHNEKLKLGARSPEEAAKWIRSLQEAAVKECPCPT 122
+ INRK F + T Y D ++++L W++++ +AA+ + P+
Sbjct: 79 DHINRKYAFKAAHPNMRTYYFCTDTGKEMEL----------WMKAMLDAALVQTSGPS 126
>pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R0D|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 37/143 (25%)
Query: 11 EGWLYAILVNRIGMQIS--RKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDN 68
EGWL ++G ++ ++R+FIL DNCL Y +++KE + + IR ++
Sbjct: 216 EGWLL-----KLGGRVKTWKRRWFILTDNCL--YYFEYTTDKEPRGIIPLENLSIREVED 268
Query: 69 GRESINRKVLFVFTLYNSLDHNEKLK-------------------LGARSPEEAAKWIRS 109
R+ F LYN + +K + A SPEE +W++S
Sbjct: 269 PRKPN------CFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKS 322
Query: 110 LQEAAVKECPCPTYNFVAVSKRR 132
++ + ++ P Y+ +A KRR
Sbjct: 323 IKASISRD---PFYDMLATRKRR 342
>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R09|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 37/143 (25%)
Query: 11 EGWLYAILVNRIGMQIS--RKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDN 68
EGWL ++G ++ ++R+FIL DNCL Y +++KE + + IR ++
Sbjct: 216 EGWLL-----KLGGRVKTWKRRWFILTDNCL--YYFEYTTDKEPRGIIPLENLSIREVED 268
Query: 69 GRESINRKVLFVFTLYNSLDHNEKLK-------------------LGARSPEEAAKWIRS 109
R+ F LYN + +K + A SPEE +W +S
Sbjct: 269 PRKPN------CFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWXKS 322
Query: 110 LQEAAVKECPCPTYNFVAVSKRR 132
++ + ++ P Y+ +A KRR
Sbjct: 323 IKASISRD---PFYDXLATRKRR 342
>pdb|1U2B|A Chain A, Triglycine Variant Of The Grp1 Pleckstrin Homology Domain
Unliganded
Length = 138
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 29/126 (23%)
Query: 11 EGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDNGR 70
EGWL + R+ + ++R+FIL DNCL Y +++KE + + IR ++ R
Sbjct: 18 EGWLLKLGGGRV--KTWKRRWFILTDNCL--YYFEYTTDKEPRGIIPLENLSIREVEDPR 73
Query: 71 ESINRKVLFVFTLYNSLDHNEKLK-------------------LGARSPEEAAKWIRSLQ 111
+ F LYN + +K + A SPEE +W++S++
Sbjct: 74 KPN------CFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIK 127
Query: 112 EAAVKE 117
+ ++
Sbjct: 128 ASISRD 133
>pdb|1UPQ|A Chain A, Crystal Structure Of The Pleckstrin Homology (Ph) Domain
Of Pepp1
pdb|1UPR|A Chain A, Crystal Structure Of The Pepp1 Pleckstrin Homology Domain
In Complex With Inositol 1,3,4,5-Tetrakisphosphate
Length = 123
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 10 IEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDNG 69
I GWL+ + G+++ ++R+F+L +CL YK +EE V +++ + +G
Sbjct: 13 IRGWLHK--QDSSGLRLWKRRWFVLSGHCLFYYK----DSREESVLGSVLLPSYNIRPDG 66
Query: 70 RESINRKVLFVFTLYNSLDHNEKLKLGARSPEEAAKWIRSLQEAAVKE 117
R F FT + L A + E+ W+R+L A+ E
Sbjct: 67 -PGAPRGRRFTFTAEHP--GMRTYVLAADTLEDLRGWLRALGRASRAE 111
>pdb|1FHW|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
pdb|1FHW|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
Length = 129
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 37/139 (26%)
Query: 11 EGWLYAILVNRIGMQIS--RKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDN 68
EGWL ++G ++ ++R+FIL DNCL Y +++KE + + IR ++
Sbjct: 6 EGWLL-----KLGGRVKTWKRRWFILTDNCL--YYFEYTTDKEPRGIIPLENLSIREVED 58
Query: 69 GRESINRKVLFVFTLYNSLDHNEKLK-------------------LGARSPEEAAKWIRS 109
R+ F LYN + +K + A SPEE +W++S
Sbjct: 59 PRKP------NCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKS 112
Query: 110 LQEAAVKECPCPTYNFVAV 128
++ + ++ P Y+ +A
Sbjct: 113 IKASISRD---PFYDMLAT 128
>pdb|1U27|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain
In Complex With Ins(1,3,4,5)p4
pdb|1U29|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain
In Complex With Ins(1,4,5)p3
Length = 129
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 11 EGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDNGR 70
EGWL + R+ + ++R+FIL DNCL Y +++KE + + IR D+ R
Sbjct: 14 EGWLLKLGGGRV--KTWKRRWFILTDNCL--YYFEYTTDKEPRGIIPLENLSIREVDDPR 69
Query: 71 ES-------INRKVLFVFTLYNSLD------HNEKLKLGARSPEEAAKWIRSLQEAA 114
+ N K + D ++ ++ A + EE +WI+S+Q A
Sbjct: 70 KPNCFELYIPNNKGQLIKACKTEADGRVVEGNHMVYRISAPTQEEKDEWIKSIQAAV 126
>pdb|1FHX|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
pdb|1FHX|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
Length = 129
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 37/139 (26%)
Query: 11 EGWLYAILVNRIGMQIS--RKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDN 68
EGWL ++G ++ ++R+FIL DNCL Y +++KE + + IR ++
Sbjct: 6 EGWLL-----KLGGRVKTWKRRWFILTDNCL--YYFEYTTDKEPRGIIPLENLSIREVED 58
Query: 69 GRESINRKVLFVFTLYNSLDHNEKLK-------------------LGARSPEEAAKWIRS 109
R+ F LYN + +K + A SPEE +W +S
Sbjct: 59 PRKP------NCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWXKS 112
Query: 110 LQEAAVKECPCPTYNFVAV 128
++ + ++ P Y+ +A
Sbjct: 113 IKASISRD---PFYDXLAT 128
>pdb|1FGY|A Chain A, Grp1 Ph Domain With Ins(1,3,4,5)p4
pdb|1FGZ|A Chain A, Grp1 Ph Domain (Unliganded)
Length = 127
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 38/130 (29%)
Query: 11 EGWLYAILVNRIGMQIS--RKRYFILLDNCLNGYKMVPSSEKEE--PVKSAMIHSCIRVT 66
EGWL ++G ++ ++R+FIL DNCL ++ E P+++ I
Sbjct: 8 EGWLL-----KLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSI------- 55
Query: 67 DNGRESINRKVLFVFTLYNSLDHNEKLK-------------------LGARSPEEAAKWI 107
RE ++ + F LYN + +K + A SPEE +W
Sbjct: 56 ---REVLDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWX 112
Query: 108 RSLQEAAVKE 117
+S++ + ++
Sbjct: 113 KSIKASISRD 122
>pdb|1EAZ|A Chain A, Crystal Structure Of The Phosphoinositol
(3,4)-Bisphosphate Binding Ph Domain Of Tapp1 From Human
Length = 125
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 28 RKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNSL 87
++RYF L +N + +K S ++EP++ + +V +E ++ L+ +
Sbjct: 31 KRRYFQLDENTIGYFK---SELEKEPLRVIPLKEVHKV----QECKQSDIMMRDNLFEIV 83
Query: 88 DHNEKLKLGARSPEEAAKWIRSLQEAAVKE 117
+ + A SPEE WI+++ A V +
Sbjct: 84 TTSRTFYVQADSPEEMHSWIKAVSGAIVAQ 113
>pdb|1OFZ|A Chain A, Crystal Structure Of Fungal Lectin: Six-Bladed
Beta-Propeller Fold And Novel Fucose Recognition Mode
For Aleuria Aurantia Lectin
pdb|1OFZ|B Chain B, Crystal Structure Of Fungal Lectin: Six-Bladed
Beta-Propeller Fold And Novel Fucose Recognition Mode
For Aleuria Aurantia Lectin
Length = 312
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 20/79 (25%)
Query: 134 PSLRLYVSKRS-------DYKYSGDWTLGSSIRSEATASDV----IAPSPWKIFGCQNGL 182
P++R+Y K + +Y +SG WT G+S S A + + I P L
Sbjct: 128 PNIRVYYQKSNLSGSSIHEYVWSGKWTAGASFGSTAPGTGIGATAIGPGR---------L 178
Query: 183 RLFKEAKDWDSRGRHWDDH 201
R++ +A D R WD +
Sbjct: 179 RIYYQATDNKIREHCWDSN 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,973,956
Number of Sequences: 62578
Number of extensions: 769615
Number of successful extensions: 1670
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1661
Number of HSP's gapped (non-prelim): 17
length of query: 637
length of database: 14,973,337
effective HSP length: 105
effective length of query: 532
effective length of database: 8,402,647
effective search space: 4470208204
effective search space used: 4470208204
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)