Query 006638
Match_columns 637
No_of_seqs 317 out of 699
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 12:19:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006638.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006638hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00188 enhanced disease resi 100.0 4E-137 9E-142 1146.9 52.0 564 7-633 3-605 (719)
2 cd08914 START_STARD15-like Lip 100.0 5E-40 1.1E-44 332.0 20.7 205 109-344 3-216 (236)
3 cd08913 START_STARD14-like Lip 100.0 7E-39 1.5E-43 325.9 22.6 211 110-349 6-226 (240)
4 cd08873 START_STARD14_15-like 100.0 7.6E-39 1.6E-43 324.0 21.8 196 110-334 3-206 (235)
5 cd08904 START_STARD6-like Lipi 100.0 9.8E-36 2.1E-40 296.5 23.0 183 169-362 20-203 (204)
6 cd08868 START_STARD1_3_like Ch 100.0 2.9E-34 6.3E-39 286.1 24.4 184 168-364 21-207 (208)
7 cd08906 START_STARD3-like Chol 100.0 6.8E-34 1.5E-38 284.6 21.4 189 163-364 17-208 (209)
8 cd08869 START_RhoGAP C-termina 100.0 2E-33 4.3E-38 278.6 23.0 177 170-364 18-196 (197)
9 cd08903 START_STARD5-like Lipi 100.0 1.3E-32 2.8E-37 275.0 23.1 185 169-364 20-207 (208)
10 cd08874 START_STARD9-like C-te 100.0 1E-32 2.2E-37 275.2 21.5 186 160-363 11-204 (205)
11 cd08867 START_STARD4_5_6-like 100.0 3.1E-32 6.7E-37 271.1 22.8 182 170-362 21-205 (206)
12 cd08902 START_STARD4-like Lipi 100.0 1.8E-32 4E-37 269.6 19.8 180 169-362 21-201 (202)
13 cd08909 START_STARD13-like C-t 100.0 2.5E-32 5.5E-37 271.7 20.4 177 171-364 27-204 (205)
14 cd08871 START_STARD10-like Lip 100.0 5.3E-31 1.1E-35 265.1 22.9 182 169-366 21-204 (222)
15 cd08905 START_STARD1-like Chol 100.0 2.6E-31 5.6E-36 265.9 20.0 183 169-364 23-208 (209)
16 smart00234 START in StAR and p 100.0 2.4E-30 5.2E-35 255.4 23.0 185 166-364 14-202 (206)
17 cd08872 START_STARD11-like Cer 100.0 3.4E-30 7.4E-35 262.2 21.8 185 170-368 25-230 (235)
18 cd08907 START_STARD8-like C-te 100.0 2.3E-30 5E-35 255.3 18.0 177 170-364 26-204 (205)
19 cd08911 START_STARD7-like Lipi 100.0 1E-29 2.2E-34 253.9 22.3 180 169-362 19-204 (207)
20 PF01852 START: START domain; 100.0 2.7E-28 6E-33 240.2 23.2 187 168-366 16-204 (206)
21 cd08910 START_STARD2-like Lipi 100.0 1.1E-28 2.5E-33 246.5 20.0 178 169-363 23-205 (207)
22 cd08908 START_STARD12-like C-t 100.0 1.1E-28 2.4E-33 245.7 19.4 174 171-363 27-202 (204)
23 cd08870 START_STARD2_7-like Li 100.0 8E-28 1.7E-32 240.3 22.1 179 171-363 22-207 (209)
24 cd00177 START Lipid-binding ST 100.0 4.3E-27 9.2E-32 226.9 23.3 158 171-340 15-172 (193)
25 cd08876 START_1 Uncharacterize 100.0 2.6E-27 5.6E-32 232.4 22.1 182 165-362 11-194 (195)
26 PF07059 DUF1336: Protein of u 99.9 2.5E-27 5.4E-32 239.6 8.3 100 528-628 1-118 (227)
27 cd08877 START_2 Uncharacterize 99.9 1.2E-25 2.7E-30 225.2 17.6 187 162-363 13-213 (215)
28 KOG2761 START domain-containin 99.9 1.4E-21 3E-26 193.8 18.2 165 167-342 25-194 (219)
29 KOG1739 Serine/threonine prote 99.6 5.3E-15 1.1E-19 159.0 9.9 169 161-338 393-578 (611)
30 cd08875 START_ArGLABRA2_like C 99.5 1.7E-12 3.7E-17 131.5 16.7 129 200-335 58-199 (229)
31 cd08864 SRPBCC_DUF3074 DUF3074 99.4 6.3E-12 1.4E-16 126.3 14.5 131 227-362 64-206 (208)
32 cd01246 PH_oxysterol_bp Oxyste 98.9 1.5E-08 3.2E-13 86.9 10.3 91 10-113 1-91 (91)
33 smart00233 PH Pleckstrin homol 98.8 5.5E-08 1.2E-12 81.9 11.3 100 9-114 2-101 (102)
34 cd07813 COQ10p_like Coenzyme Q 98.8 5.8E-08 1.3E-12 89.9 12.2 134 205-363 2-136 (138)
35 PF00169 PH: PH domain; Inter 98.7 6E-08 1.3E-12 83.3 9.5 100 9-114 2-103 (104)
36 cd01251 PH_centaurin_alpha Cen 98.7 7.9E-08 1.7E-12 86.3 9.5 99 10-115 1-101 (103)
37 cd08866 SRPBCC_11 Ligand-bindi 98.7 1.1E-06 2.3E-11 81.5 16.8 142 205-363 2-143 (144)
38 cd01260 PH_CNK Connector enhan 98.6 4.4E-07 9.6E-12 79.7 10.1 93 10-113 2-96 (96)
39 cd01238 PH_Tec Tec pleckstrin 98.5 2.6E-07 5.6E-12 83.4 7.6 96 10-113 2-106 (106)
40 cd01233 Unc104 Unc-104 pleckst 98.5 1.1E-06 2.3E-11 78.4 10.0 95 10-115 4-99 (100)
41 cd01235 PH_SETbf Set binding f 98.4 2.3E-06 4.9E-11 75.4 10.1 95 10-114 1-101 (101)
42 PF15413 PH_11: Pleckstrin hom 98.4 6.3E-07 1.4E-11 81.7 6.7 95 10-113 1-112 (112)
43 cd01250 PH_centaurin Centaurin 98.4 2.3E-06 5E-11 73.7 9.7 94 10-113 1-94 (94)
44 cd01247 PH_GPBP Goodpasture an 98.4 2.8E-06 6.1E-11 74.7 10.3 86 10-112 1-90 (91)
45 cd01257 PH_IRS Insulin recepto 98.4 2.8E-06 6E-11 76.4 10.0 90 9-112 3-100 (101)
46 cd07819 SRPBCC_2 Ligand-bindin 98.4 1.6E-05 3.6E-10 72.5 15.3 135 203-361 3-139 (140)
47 cd00900 PH-like Pleckstrin hom 98.4 3.1E-06 6.7E-11 71.1 9.6 98 10-113 1-99 (99)
48 cd01252 PH_cytohesin Cytohesin 98.3 4E-06 8.7E-11 77.5 11.0 95 10-115 2-114 (125)
49 cd01265 PH_PARIS-1 PARIS-1 ple 98.3 2.9E-06 6.3E-11 75.0 9.5 91 10-113 1-93 (95)
50 PF11274 DUF3074: Protein of u 98.3 1.9E-05 4.1E-10 78.3 15.6 140 211-356 13-178 (184)
51 cd01266 PH_Gab Gab (Grb2-assoc 98.2 9.4E-06 2E-10 73.3 9.2 96 11-113 2-107 (108)
52 cd01219 PH_FGD FGD (faciogenit 98.2 2.3E-05 5.1E-10 70.0 11.2 97 9-115 3-100 (101)
53 cd05018 CoxG Carbon monoxide d 98.1 5.3E-05 1.2E-09 69.5 13.8 140 204-362 3-143 (144)
54 cd01244 PH_RasGAP_CG9209 RAS_G 98.1 9.6E-06 2.1E-10 72.5 8.4 85 19-113 14-98 (98)
55 cd00821 PH Pleckstrin homology 98.1 1.4E-05 3E-10 66.5 8.0 95 10-113 1-96 (96)
56 cd01241 PH_Akt Akt pleckstrin 98.0 3.1E-05 6.7E-10 69.4 9.8 92 10-113 3-101 (102)
57 cd01264 PH_melted Melted pleck 98.0 2.8E-05 6.1E-10 69.9 9.1 96 10-114 2-101 (101)
58 cd08861 OtcD1_ARO-CYC_like N-t 98.0 9.8E-05 2.1E-09 68.2 11.8 137 206-363 3-141 (142)
59 cd01254 PH_PLD Phospholipase D 97.9 7E-05 1.5E-09 69.3 9.3 80 28-113 34-121 (121)
60 cd01220 PH_CDEP Chondrocyte-de 97.9 0.00012 2.6E-09 65.6 10.1 94 10-115 4-98 (99)
61 PF15409 PH_8: Pleckstrin homo 97.8 5E-05 1.1E-09 66.7 6.9 84 12-113 1-88 (89)
62 PF03364 Polyketide_cyc: Polyk 97.8 0.00063 1.4E-08 61.9 14.0 110 210-340 1-113 (130)
63 cd01253 PH_beta_spectrin Beta- 97.8 0.00013 2.8E-09 65.0 8.9 96 10-113 1-104 (104)
64 cd01236 PH_outspread Outspread 97.8 0.00017 3.6E-09 65.3 9.4 94 10-111 1-101 (104)
65 cd08860 TcmN_ARO-CYC_like N-te 97.7 0.0019 4.1E-08 61.5 15.9 137 206-364 5-144 (146)
66 cd07821 PYR_PYL_RCAR_like Pyra 97.6 0.002 4.3E-08 58.4 14.9 138 203-362 2-139 (140)
67 cd01256 PH_dynamin Dynamin ple 97.6 0.00028 6E-09 62.9 8.7 95 10-113 3-104 (110)
68 cd01237 Unc112 Unc-112 pleckst 97.6 0.00034 7.3E-09 63.4 8.8 89 20-114 13-103 (106)
69 cd01263 PH_anillin Anillin Ple 97.6 0.00036 7.7E-09 64.9 9.2 103 10-113 3-122 (122)
70 cd07817 SRPBCC_8 Ligand-bindin 97.5 0.0039 8.4E-08 56.8 15.3 135 204-363 2-138 (139)
71 cd01245 PH_RasGAP_CG5898 RAS G 97.5 0.0004 8.6E-09 62.2 7.5 87 12-112 3-97 (98)
72 KOG2200 Tumour suppressor prot 97.4 2.6E-05 5.6E-10 87.3 -0.8 92 262-366 574-666 (674)
73 PRK10724 hypothetical protein; 97.4 0.0043 9.2E-08 60.1 14.0 129 201-351 14-143 (158)
74 KOG0930 Guanine nucleotide exc 97.1 0.0012 2.5E-08 68.6 7.7 94 10-115 262-376 (395)
75 PF10604 Polyketide_cyc2: Poly 97.0 0.079 1.7E-06 47.9 17.9 133 204-362 4-138 (139)
76 cd01230 PH_EFA6 EFA6 Pleckstri 96.9 0.0082 1.8E-07 55.5 9.9 99 10-115 2-112 (117)
77 cd08865 SRPBCC_10 Ligand-bindi 96.8 0.044 9.5E-07 49.4 14.0 134 206-363 3-139 (140)
78 PF12814 Mcp5_PH: Meiotic cell 96.6 0.019 4.1E-07 53.3 10.4 101 10-115 11-122 (123)
79 cd07812 SRPBCC START/RHO_alpha 96.4 0.16 3.5E-06 44.2 15.0 114 205-337 2-115 (141)
80 cd07823 SRPBCC_5 Ligand-bindin 96.2 0.13 2.7E-06 48.2 13.8 141 205-363 2-145 (146)
81 cd01239 PH_PKD Protein kinase 96.2 0.019 4E-07 52.8 7.6 98 10-113 2-117 (117)
82 cd07824 SRPBCC_6 Ligand-bindin 96.2 0.21 4.6E-06 46.7 15.2 109 204-335 3-114 (146)
83 cd07818 SRPBCC_1 Ligand-bindin 95.7 0.26 5.7E-06 45.8 13.4 139 203-363 3-149 (150)
84 cd08862 SRPBCC_Smu440-like Lig 95.6 0.67 1.5E-05 41.9 15.6 40 204-244 3-42 (138)
85 PF06240 COXG: Carbon monoxide 94.9 1.2 2.7E-05 41.7 15.2 117 206-341 1-117 (140)
86 cd01224 PH_Collybistin Collybi 94.7 0.64 1.4E-05 42.6 11.9 98 10-112 4-105 (109)
87 cd07822 SRPBCC_4 Ligand-bindin 94.5 2.1 4.5E-05 38.5 15.3 112 204-336 2-113 (141)
88 cd01218 PH_phafin2 Phafin2 Pl 94.3 0.38 8.2E-06 43.7 9.6 89 20-116 11-100 (104)
89 PF15410 PH_9: Pleckstrin homo 93.7 0.33 7.2E-06 44.7 8.4 99 10-115 2-119 (119)
90 COG2867 Oligoketide cyclase/li 93.0 0.78 1.7E-05 44.0 9.6 116 203-339 3-118 (146)
91 cd01223 PH_Vav Vav pleckstrin 93.0 0.65 1.4E-05 43.0 8.8 89 27-116 20-113 (116)
92 cd07814 SRPBCC_CalC_Aha1-like 92.3 5.1 0.00011 36.1 14.0 137 204-363 2-138 (139)
93 cd07825 SRPBCC_7 Ligand-bindin 91.3 11 0.00024 34.5 15.2 30 204-234 2-31 (144)
94 KOG3845 MLN, STAR and related 90.9 0.011 2.4E-07 61.2 -5.7 157 173-338 27-184 (241)
95 cd07816 Bet_v1-like Ligand-bin 90.5 11 0.00025 35.6 14.8 119 204-335 3-122 (148)
96 cd01261 PH_SOS Son of Sevenles 90.1 3.2 6.9E-05 38.3 10.1 97 9-115 5-110 (112)
97 cd01249 PH_oligophrenin Oligop 89.7 1.8 3.9E-05 39.4 8.1 95 10-112 1-103 (104)
98 cd01259 PH_Apbb1ip Apbb1ip (Am 89.6 1.1 2.4E-05 41.3 6.6 102 10-114 2-108 (114)
99 cd01221 PH_ephexin Ephexin Ple 89.4 3 6.6E-05 39.2 9.6 100 10-111 5-119 (125)
100 cd07820 SRPBCC_3 Ligand-bindin 89.4 15 0.00033 33.7 14.4 108 206-334 3-113 (137)
101 KOG0690 Serine/threonine prote 88.3 0.65 1.4E-05 50.2 4.9 100 5-115 12-117 (516)
102 cd01222 PH_clg Clg (common-sit 88.2 3.7 8.1E-05 36.8 8.9 81 27-115 16-96 (97)
103 COG3427 Carbon monoxide dehydr 87.9 10 0.00022 36.7 12.2 126 204-350 3-130 (146)
104 cd01242 PH_ROK Rok (Rho- assoc 87.6 4.1 8.8E-05 37.5 8.9 105 9-115 1-111 (112)
105 PF15408 PH_7: Pleckstrin homo 81.9 1 2.2E-05 39.5 2.3 92 11-112 1-95 (104)
106 cd01243 PH_MRCK MRCK (myotonic 80.6 23 0.00051 33.2 10.7 104 9-113 3-118 (122)
107 COG5637 Predicted integral mem 78.4 51 0.0011 33.1 12.8 141 202-366 70-212 (217)
108 cd01258 PH_syntrophin Syntroph 77.1 6.9 0.00015 35.9 6.2 100 11-112 2-107 (108)
109 PTZ00267 NIMA-related protein 74.6 7.5 0.00016 43.7 7.1 93 9-114 378-476 (478)
110 cd01234 PH_CADPS CADPS (Ca2+-d 74.2 5.4 0.00012 36.5 4.6 95 9-115 3-111 (117)
111 cd01225 PH_Cool_Pix Cool (clon 68.3 17 0.00038 33.5 6.6 79 24-113 25-108 (111)
112 KOG2059 Ras GTPase-activating 68.0 6.3 0.00014 46.4 4.5 98 9-115 566-665 (800)
113 PLN02866 phospholipase D 66.8 20 0.00044 44.3 8.6 80 28-115 219-308 (1068)
114 cd01232 PH_TRIO Trio pleckstri 59.4 70 0.0015 29.5 8.9 90 24-115 21-113 (114)
115 KOG4424 Predicted Rho/Rac guan 54.7 27 0.00058 40.5 6.4 93 9-116 273-371 (623)
116 TIGR01599 PYST-A Plasmodium yo 54.4 2.6E+02 0.0056 28.7 19.1 119 202-327 59-208 (208)
117 PLN02647 acyl-CoA thioesterase 50.7 28 0.0006 39.4 5.7 74 37-110 336-430 (437)
118 COG1607 Acyl-CoA hydrolase [Li 50.6 17 0.00038 35.4 3.6 96 9-115 31-147 (157)
119 cd01227 PH_Dbs Dbs (DBL's big 45.7 1.6E+02 0.0034 28.1 9.1 91 24-117 26-118 (133)
120 PF14593 PH_3: PH domain; PDB: 45.3 73 0.0016 29.0 6.5 85 9-116 14-101 (104)
121 KOG3723 PH domain protein Melt 42.7 12 0.00026 43.2 1.3 93 17-117 745-839 (851)
122 PF11687 DUF3284: Domain of un 41.2 2.3E+02 0.0051 26.1 9.4 107 204-339 1-109 (120)
123 KOG1451 Oligophrenin-1 and rel 38.9 64 0.0014 37.7 6.2 97 9-113 266-366 (812)
124 cd08893 SRPBCC_CalC_Aha1-like_ 37.4 31 0.00067 30.9 3.0 30 204-234 2-31 (136)
125 COG3832 Uncharacterized conser 35.1 3.6E+02 0.0077 25.5 9.9 32 201-233 7-38 (149)
126 cd08899 SRPBCC_CalC_Aha1-like_ 32.6 35 0.00075 32.4 2.6 32 201-233 10-41 (157)
127 KOG1117 Rho- and Arf-GTPase ac 30.7 55 0.0012 39.8 4.1 82 23-113 1047-1130(1186)
128 cd08898 SRPBCC_CalC_Aha1-like_ 30.3 47 0.001 30.1 3.0 31 204-235 3-33 (145)
129 KOG1090 Predicted dual-specifi 29.3 38 0.00082 41.8 2.6 93 9-114 1635-1731(1732)
130 KOG1117 Rho- and Arf-GTPase ac 28.8 1.5E+02 0.0033 36.3 7.3 97 12-113 496-600 (1186)
131 cd01262 PH_PDK1 3-Phosphoinosi 28.8 2.1E+02 0.0046 25.5 6.6 74 21-113 10-87 (89)
132 KOG3549 Syntrophins (type gamm 28.4 1.3E+02 0.0028 33.2 6.1 101 9-115 282-387 (505)
133 PTZ00283 serine/threonine prot 27.3 67 0.0015 36.5 4.1 38 76-115 453-490 (496)
134 PLN02647 acyl-CoA thioesterase 22.7 3.4E+02 0.0073 30.9 8.4 68 45-112 156-239 (437)
135 KOG3751 Growth factor receptor 22.4 2.1E+02 0.0046 33.2 6.6 103 9-114 318-424 (622)
136 PF15405 PH_5: Pleckstrin homo 21.9 1.3E+02 0.0028 28.5 4.3 40 74-113 95-134 (135)
137 cd01248 PH_PLC Phospholipase C 21.3 1.2E+02 0.0026 27.4 3.8 94 12-112 10-114 (115)
No 1
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=100.00 E-value=4.1e-137 Score=1146.86 Aligned_cols=564 Identities=29% Similarity=0.491 Sum_probs=495.3
Q ss_pred ccceeeEEEEEeecccccccccceeeEeecceeeeeecCCCCCCCccceeeeecCceEEecCCcceeeCceEEEEEEecC
Q 006638 7 ESKIEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNS 86 (637)
Q Consensus 7 ~~~~egW~~~~~~~~lg~~~~~~Ryfvl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~ 86 (637)
..+|||||||||+||||++|||+|||||+|++|+||||+|+++ ++|||+|+||+||||||+||++|||++||||+|||+
T Consensus 3 ~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~-~~pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Yn~ 81 (719)
T PLN00188 3 KVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNK 81 (719)
T ss_pred cceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccc-cccceeeccCCCceEeecCceEEcCceEEEEEEecC
Confidence 4579999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCcceeeeccCCHHHHHHHHHHHHHHHhhcC----CCCCC--cc-------------cccc-----------cccCccc
Q 006638 87 LDHNEKLKLGARSPEEAAKWIRSLQEAAVKEC----PCPTY--NF-------------VAVS-----------KRRWPSL 136 (637)
Q Consensus 87 ~~~~~~~~~~~~~~eea~~W~~~~~~a~~~~~----~~~~~--~~-------------~~~~-----------~~~~~~~ 136 (637)
++|++|++|||+|+|||++||+||++|++|+. .+++. ++ .+++ +.++.++
T Consensus 82 ~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 161 (719)
T PLN00188 82 KEKYHRITMAAFNIQEALIWKEKIESVIDQHQDSQVPNGNKYASFEYKSGMDNGRTASSSDHESQFSAQEDEEDTHRDLL 161 (719)
T ss_pred CCccccEEEecCCHHHHHHHHHHHHHHHhhhccccccccccccceeeccccccccccccccccccccccccccccCcccc
Confidence 99999999999999999999999999999752 11100 00 0111 2356778
Q ss_pred eeeeccCCCCCcccCCCCCccc--cccccccccCCCCCCEEEEeeCCEEEEEEeecCCCCCccCCCCceEEEEEEecCCH
Q 006638 137 RLYVSKRSDYKYSGDWTLGSSI--RSEATASDVIAPSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTS 214 (637)
Q Consensus 137 r~~~~~~~~~~~s~~w~~~~~~--~n~~a~~dv~a~~~Wkl~~~knGVrIy~~~~~~~~~~~~~s~~~~~Ka~gvV~asp 214 (637)
|+++||+||+.+.++||..... +|.++.+|+++.+.|+++.|+||+|||++..+.++.++ +..++||++|+|+++|
T Consensus 162 r~~tig~gp~~s~~~~t~~~~~~~~~~~~~~d~~~~~~Wr~~~c~NGlRiF~e~~~~~~~~~--~~~~~mKavGVV~asp 239 (719)
T PLN00188 162 RRTTIGNGPPDSVLDWTKEFDSELSNQNSNNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPR--SCSRAMKAVGVVEATC 239 (719)
T ss_pred eeeeccCCCcchhcccccccCccccccCCCccccccCCeEEEEeeccceeehhhhccccccc--cCCceeEEEEEecCCH
Confidence 9999999999999999876654 48899999999999999999999999999988887665 5569999999999999
Q ss_pred HHHHHHHhcCCCCccccccccceeEEEEeecCceEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeEEEEEeecCCCC
Q 006638 215 EAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTYVILYHSVNHKK 294 (637)
Q Consensus 215 e~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~DGsyvI~~~SV~Hp~ 294 (637)
++||++||+++..|.+||.++.++++||+||+||+|+|.++++.|+|+.++|||||++|+|++.+||+|+|+++||+||+
T Consensus 240 E~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDGsYvil~~Sv~Hp~ 319 (719)
T PLN00188 240 EEIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHEN 319 (719)
T ss_pred HHHHHHHhccCcccccchhcccceEEEEEecCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCCcEEEeeeeeecCC
Confidence 99999999998779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEEeeeeEEEEeCC---CCCceEEEEEEEEeCCCccccccccchhhHHHHHHHHHHHHHHHHHhhcCCCCc
Q 006638 295 CPKQKGYVRACLKSGGFVITPSN---QGKQSIVKHMLAVDWKYWKLYLRPSSARSITIRMLERVAALRELFQAKAGNTSS 371 (637)
Q Consensus 295 ~Pp~~GyVRaei~~gG~vI~Pl~---~~~~~~VTyi~qvDpkGwip~~~~~~~~~i~~~ml~~va~LRe~~~~~~~~~~~ 371 (637)
|||++|||||++++|||+|.|+. +.++|+|+|++|+|+|||+|+|+++++++++++||++||+|||||.+++..++
T Consensus 320 cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~~y~~s~~~~~~l~mL~~VAgLrE~~~~~~~~~~- 398 (719)
T PLN00188 320 CGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGYIPSFQQHCLLQMLNSVAGLREWFSQTDERGA- 398 (719)
T ss_pred CCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCccccccCccccccchHHHHHHHHHHHHHHhcCcccCc-
Confidence 99999999999999999999983 33699999999999999999999999999999999999999999999997766
Q ss_pred cccccCcccccccccccch--hhhhhhcccchhHHHHHHHHHhhhccCCCCCCCCCCCCCCCcccCCCCCCCcccCCccC
Q 006638 372 EFLSRGSTREIKASQDSEL--SEDIQLKNEEDTEIEIQKMEEIRKTEKDAPFTEEKPSSGRASLMGINDASDEFFDVPEA 449 (637)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~de~f~~~~~ 449 (637)
.+|++++.+++.. .++.++..++ ...+.+.+...+..++++++++|+|||||+||+
T Consensus 399 ------~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~dE~~~~~e~ 456 (719)
T PLN00188 399 ------PPRIPVMVNMASASVSSKKNQKPQE----------------SSPSLDQTNAASRNSVMMDEDSDDDEEFQIPES 456 (719)
T ss_pred ------cccceeecccccccccccccccccc----------------cccccccccccchhhhhhccccccchhccCCCc
Confidence 7889999888765 3333322221 122233333445568899999999999999998
Q ss_pred ccccccccccccCCCCCCCCCCcccccccccchhhhhhhhhhhccCcccccCCCCCCCCc-cccccccccCCCCCCCCce
Q 006638 450 YSDHMENDWSLEVSPELQPLSAPQSKLASAAGFVKKLHDLAVHKKGCTDLQEVPNEDEKS-WSYGATLQTDSSFTSPCSW 528 (637)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~-~~~~g~l~~~~~~~~~~~W 528 (637)
+++.+ +.+ +.++.++ ..+.+++.+| ++|+|+|++++++++.+||
T Consensus 457 ~~~~~------------------~~k-~~~~~~~----------------~~~~~~~~~d~~~~~g~l~~~~~~~~~ncW 501 (719)
T PLN00188 457 EQEPE------------------TTK-NETKDTA----------------MEEEPQDKIDLSCFSGNLRRDDRDKARDCW 501 (719)
T ss_pred ccccc------------------ccc-ccccccc----------------cccCCcccccccccccccccCCCCCCCCCc
Confidence 87210 000 0000000 1345778899 9999999999999999999
Q ss_pred eccCCCceEEecccccccCccccCCCCcceeeeeeeeecCCcchhhhcCCCchhHHhhhcCCCceEEEEEEEeCCC-Cce
Q 006638 529 AAADPSTFLIRGENYLKDHRKIKADGTLMQMIGADWLRSNKREDNLAARPCSLVQKYAAGGGPEFFFVVNIQFPGV-MDS 607 (637)
Q Consensus 529 s~p~~~~F~VRG~~Yl~Dk~Kvpa~~~l~~lvgvD~f~~~~~~dhia~~~~~~vq~~~~~~~~~f~fivNiqvPg~-~~s 607 (637)
++|++++|+|||+|||+||+|||||++||+|+|||||++++|+||||+||+|++|.+.+++ ||+|||||||||+ +||
T Consensus 502 s~Pd~~~F~VRG~~Yl~Dk~KvPAg~~l~~lvgvDwfks~~ridhVa~r~~~~vq~a~~k~--~F~fiVNlQvPg~~~ys 579 (719)
T PLN00188 502 RISDGNNFKVRSKNFCYDKSKIPAGKHLMDLVAVDWFKDTKRMDHVARRKGCAAQVAAEKG--LFSFVVNLQVPGSTHYS 579 (719)
T ss_pred cCCCCcceEEcCCCcccCCccccCCccceeeEEEEEEcCCchhhHhhcCCCchhhhhcccC--CcEEEEEEEccCCCceE
Confidence 9999999999999999999999999999999999999999999999999999999976665 6999999999999 999
Q ss_pred eEEEecccccCCCchhhhhccccccc
Q 006638 608 QAECWEDGLLAGASTRSQLLSWEELF 633 (637)
Q Consensus 608 ~V~y~~~~~~~~~s~~~~~~~~~~~~ 633 (637)
+|+||.......+|++.+|++=++-|
T Consensus 580 ~V~Yf~~~~l~~~sLl~rF~~GDD~f 605 (719)
T PLN00188 580 MVFYFVTKELVPGSLLQRFVDGDDEF 605 (719)
T ss_pred EEEEEeccCCCCchHHHHhccCchhH
Confidence 99999988889999999999855544
No 2
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=100.00 E-value=5e-40 Score=332.04 Aligned_cols=205 Identities=18% Similarity=0.298 Sum_probs=186.4
Q ss_pred HHHHHHhhcCCCCCCcccccccccCccc-eeeeccC-CCCCcccCCCCCcccc----ccccccccCCCCCCEEEEeeCCE
Q 006638 109 SLQEAAVKECPCPTYNFVAVSKRRWPSL-RLYVSKR-SDYKYSGDWTLGSSIR----SEATASDVIAPSPWKIFGCQNGL 182 (637)
Q Consensus 109 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~-~~~~~s~~w~~~~~~~----n~~a~~dv~a~~~Wkl~~~knGV 182 (637)
.|++|++ ++++|| |+|.+++ .++++|++||++||+| |+.||...++.++|++..+++||
T Consensus 3 ~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~W~l~~dkdgI 67 (236)
T cd08914 3 RYRGAIA---------------RKRIRLGRKYVISHKEEVPLCIHWDIGNQASLSDSNVEALKKLAAKSGWEVTSTVEKI 67 (236)
T ss_pred hhhhhHh---------------hhhhhccceeeeeccccCceecccCCCceEEEeeCCHHHhhhhcccCCCEEEEccCCE
Confidence 4899988 889999 9998877 7999999999999987 99999999999999999999999
Q ss_pred EEEEEeecCCCCCccCCCCceEEEEEEecCCHHHHHHHHhcCCCCccccccccceeEEEEeecCceEEEEEEeecCCCCC
Q 006638 183 RLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPW 262 (637)
Q Consensus 183 rIy~~~~~~~~~~~~~s~~~~~Ka~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~~tdIvY~~~~~~~~P~ 262 (637)
+||++. + ++.+.||+++++++|+++++++|.|++. |++||.++.++++|+++|+++. +|++.. .||
T Consensus 68 kVytr~-~--------s~~l~fk~e~~vdvs~~~l~~LL~D~~~-r~~Wd~~~~e~~vI~qld~~~~-vY~~~~---pPw 133 (236)
T cd08914 68 KIYTLE-E--------HDVLSVWVEKHVKRPAHLAYRLLSDFTK-RPLWDPHFLSCEVIDWVSEDDQ-IYHITC---PIV 133 (236)
T ss_pred EEEEec-C--------CCcEEEEEEEEEcCCHHHHHHHHhChhh-hchhHHhhceEEEEEEeCCCcC-EEEEec---CCC
Confidence 999984 3 3568999999999999999999999995 9999999999999999999988 565554 477
Q ss_pred -CCCCceEEEEEEEEEcC-CCe-EEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCceEEEEEEEEeCCCccccc
Q 006638 263 -GMQRRDLLVRRYWRRED-DGT-YVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYL 339 (637)
Q Consensus 263 -pvs~RDFV~lR~wrr~~-DGs-yvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~VTyi~qvDpkGwip~~ 339 (637)
|+++||||+++++++.. +|. |+|..+||.||.+||.+||||++.++.||+|+|++++ +|+|||++|+|| ||+|.|
T Consensus 134 ~Pvk~RD~V~~~s~~~~~~dg~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~~I~pl~~~-~~~VtY~~~~dP-g~lp~~ 211 (236)
T cd08914 134 NNDKPKDLVVLVSRRKPLKDGNTYVVAVKSVILPSVPPSPQYIRSEIICAGFLIHAIDSN-SCTVSYFNQISA-SILPYF 211 (236)
T ss_pred CCCCCceEEEEEEEEecCCCCCEEEEEEeecccccCCCCCCcEEeEEEEEEEEEEEcCCC-cEEEEEEEEcCC-ccchhe
Confidence 89999999999988775 775 9999999999999999999999999999999999755 799999999999 999999
Q ss_pred cccch
Q 006638 340 RPSSA 344 (637)
Q Consensus 340 ~~~~~ 344 (637)
..+++
T Consensus 212 ~~n~~ 216 (236)
T cd08914 212 AGNLG 216 (236)
T ss_pred EEecc
Confidence 65554
No 3
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=100.00 E-value=7e-39 Score=325.90 Aligned_cols=211 Identities=20% Similarity=0.280 Sum_probs=186.8
Q ss_pred HHHHHhhcCCCCCCcccccccccCccc-eeeeccC--CCCCcccCCCCCcccc----ccccccccCCCCCCEEEEeeCCE
Q 006638 110 LQEAAVKECPCPTYNFVAVSKRRWPSL-RLYVSKR--SDYKYSGDWTLGSSIR----SEATASDVIAPSPWKIFGCQNGL 182 (637)
Q Consensus 110 ~~~a~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~--~~~~~s~~w~~~~~~~----n~~a~~dv~a~~~Wkl~~~knGV 182 (637)
|++|++ ++++|| |+|.+++ .++++|++||++||+| |+.|++.+.+.++|++.++++||
T Consensus 6 ~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~W~l~~~~~gI 70 (240)
T cd08913 6 YREASA---------------RKKIRLDRKYIVSCKQTEVPLSVPWDPSNQVYLSYNNVSALKMLVAKDNWVLSSEKNQV 70 (240)
T ss_pred HHHHHh---------------hhhhhccceeeEecccccCceecccCccceeEEeecCHHHHHhhcccCCCEEEEccCCE
Confidence 999998 889999 9999887 4899999999999987 99999999999999999999999
Q ss_pred EEEEEeecCCCCCccCCCCceEEEEEEecCCHHHHHHHHhcCCCCccccccccceeEEEEeecCceEEEEEEeecCCCCC
Q 006638 183 RLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPW 262 (637)
Q Consensus 183 rIy~~~~~~~~~~~~~s~~~~~Ka~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~~tdIvY~~~~~~~~P~ 262 (637)
+||++. + +..+.||++++|++|+++|+++|.|.+. |++||.++.++++|+++|++.. +|++..+.| +|
T Consensus 71 ~Vyt~~-~--------s~~~~fK~e~~vd~s~e~v~~lL~D~~~-r~~Wd~~~~e~~vIe~id~~~~-vY~v~~~p~-~~ 138 (240)
T cd08913 71 RLYTLE-E--------DKFLSFKVEMVVHVDAAQAFLLLSDLRR-RPEWDKHYRSCELVQQVDEDDA-IYHVTSPSL-SG 138 (240)
T ss_pred EEEEEe-C--------CCccEEEEEEEEcCCHHHHHHHHhChhh-hhhhHhhccEEEEEEecCCCcE-EEEEecCCC-CC
Confidence 999954 2 3468999999999999999999999995 9999999999999999999865 677666544 36
Q ss_pred CCCCceEEEEEEEEEc-CCC-eEEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCceEEEEEEEEeCCCcccccc
Q 006638 263 GMQRRDLLVRRYWRRE-DDG-TYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYLR 340 (637)
Q Consensus 263 pvs~RDFV~lR~wrr~-~DG-syvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~VTyi~qvDpkGwip~~~ 340 (637)
|+++||||++++|++. ++| .|+|+.+|+.||++||++|||||+..+|||+|.|++++ .|+|||++++||| ++|.|+
T Consensus 139 pvs~RDfV~~~s~~~~~~~g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~-~t~vtY~~~~dPG-~LP~~~ 216 (240)
T cd08913 139 HGKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQ-LTKVSYYNQATPG-VLPYIS 216 (240)
T ss_pred CCCCCeEEEEEEEEeccCCCccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCC-cEEEEEEEEeCCc-cccHHH
Confidence 9999999999999875 333 69999999999999999999999999999999999765 7999999999996 999995
Q ss_pred c-cchhhHHH
Q 006638 341 P-SSARSITI 349 (637)
Q Consensus 341 ~-~~~~~i~~ 349 (637)
. .+....|+
T Consensus 217 ~N~~~~~~p~ 226 (240)
T cd08913 217 TDIAGLSSEF 226 (240)
T ss_pred hhhhhhccch
Confidence 3 44455554
No 4
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=100.00 E-value=7.6e-39 Score=323.98 Aligned_cols=196 Identities=20% Similarity=0.260 Sum_probs=178.5
Q ss_pred HHHHHhhcCCCCCCcccccccccCccc-eeeeccC-CCCCcccCCCCCcccc----ccccccccCCCCCCEEEEeeCCEE
Q 006638 110 LQEAAVKECPCPTYNFVAVSKRRWPSL-RLYVSKR-SDYKYSGDWTLGSSIR----SEATASDVIAPSPWKIFGCQNGLR 183 (637)
Q Consensus 110 ~~~a~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~-~~~~~s~~w~~~~~~~----n~~a~~dv~a~~~Wkl~~~knGVr 183 (637)
+++|++ +|++|| |+|.+++ .++++|++||++||+| |+.||+.+.+.++|++..++|||+
T Consensus 3 ~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~W~l~~~k~gIk 67 (235)
T cd08873 3 YREAAA---------------RKKIRLDRKYILSLQREVPLSVAWDRSNQMYLSYGNVTALKRLAAKSDWTVASSTTSVT 67 (235)
T ss_pred hHhhhh---------------hhhhhcccceeeecCccCceEcccCccccEEEeeCCHHHHhhccccCCCEEEEcCCCEE
Confidence 788888 889999 8888776 5999999999999987 999999999999999999999999
Q ss_pred EEEEeecCCCCCccCCCCceEEEEEEecCCHHHHHHHHhcCCCCccccccccceeEEEEeecCceEEEEEEeecCCCCCC
Q 006638 184 LFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWG 263 (637)
Q Consensus 184 Iy~~~~~~~~~~~~~s~~~~~Ka~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~~tdIvY~~~~~~~~P~p 263 (637)
||++. + ++.+.||+++++++|+++|+++|.|.+. |++||.++.++++|++++++..|+|.++. +|||
T Consensus 68 Vytr~-~--------s~~l~fk~e~~vd~s~~~v~dlL~D~~~-R~~WD~~~~e~evI~~id~d~~iyy~~~p---~PwP 134 (235)
T cd08873 68 LYTLE-Q--------DGVLSFCVELKVQTCASDAFDLLSDPFK-RPEWDPHGRSCEEVKRVGEDDGIYHTTMP---SLTS 134 (235)
T ss_pred EEEec-C--------CCceEEEEEEEecCCHHHHHHHHhCcch-hhhhhhcccEEEEEEEeCCCcEEEEEEcC---CCCC
Confidence 99986 3 3468899999999999999999999995 99999999999999999998888887653 5789
Q ss_pred CCCceEEEEEEEEEc-CC-CeEEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCceEEEEEEEEeCCC
Q 006638 264 MQRRDLLVRRYWRRE-DD-GTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKY 334 (637)
Q Consensus 264 vs~RDFV~lR~wrr~-~D-GsyvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~VTyi~qvDpkG 334 (637)
+++||||++++|++. ++ +.|+|..+||.|+.+||++|||||+...|||+|+|++++ +|.|||++|+|||-
T Consensus 135 vk~RDfV~~~s~~~~~~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~-~t~VtY~~~~dPg~ 206 (235)
T cd08873 135 EKPNDFVLLVSRRKPATDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGT-CTEVSYYNETNPKL 206 (235)
T ss_pred CCCceEEEEEEEEeccCCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCC-cEEEEEEEEcCCCc
Confidence 999999999999984 33 459999999999999999999999999999999999755 79999999999974
No 5
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=100.00 E-value=9.8e-36 Score=296.55 Aligned_cols=183 Identities=13% Similarity=0.187 Sum_probs=164.2
Q ss_pred CCCCCEEEEeeCCEEEEEEeecCCCCCccCCCCceEEEEEEecCCHHHHHHHHhcCCCCccccccccceeEEEEeecCce
Q 006638 169 APSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHS 248 (637)
Q Consensus 169 a~~~Wkl~~~knGVrIy~~~~~~~~~~~~~s~~~~~Ka~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~~t 248 (637)
..++|++.+.++|+.||++.... ..++++|++|+|+++|++||+++.+.+ .|.+||+++.++++||+||++|
T Consensus 20 ~~~gWk~~k~~~~~~v~~k~~~~-------~~gkl~k~egvi~~~~e~v~~~l~~~e-~r~~Wd~~~~~~~iie~Id~~T 91 (204)
T cd08904 20 DTSGWKVVKTSKKITVSWKPSRK-------YHGNLYRVEGIIPESPAKLIQFMYQPE-HRIKWDKSLQVYKMLQRIDSDT 91 (204)
T ss_pred cccCCeEEecCCceEEEEEEcCC-------CCceEEEEEEEecCCHHHHHHHHhccc-hhhhhcccccceeeEEEeCCCc
Confidence 35899999999999999986431 246999999999999999999999977 5999999999999999999999
Q ss_pred EEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCC-CCCceEEEEE
Q 006638 249 DVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSN-QGKQSIVKHM 327 (637)
Q Consensus 249 dIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~DGsyvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~-~~~~~~VTyi 327 (637)
+|+|.++++.. .+.++|||||.+|+|++.+++.|++++.||+||.|||++|||||+++++||+|.|++ ++++|+++|+
T Consensus 92 ~I~~~~~~~~~-~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~ 170 (204)
T cd08904 92 FICHTITQSFA-MGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMF 170 (204)
T ss_pred EEEEEeccccc-CCcccCceEEEEEEEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEE
Confidence 99998887532 234999999999999997778999999999999999999999999999999999995 4457999999
Q ss_pred EEEeCCCccccccccchhhHHHHHHHHHHHHHHHH
Q 006638 328 LAVDWKYWKLYLRPSSARSITIRMLERVAALRELF 362 (637)
Q Consensus 328 ~qvDpkGwip~~~~~~~~~i~~~ml~~va~LRe~~ 362 (637)
+++|||||+|+|+ +.+.++..|++.+..|++-+
T Consensus 171 ~~~DlkG~lP~~v--v~~~~~~~~~~f~~~~~~~~ 203 (204)
T cd08904 171 VQPELRGNLSRSV--IEKTMPTNLVNLILDAKDGI 203 (204)
T ss_pred EEeCCCCCCCHHH--HHHHhHHHHHHHHHHHHHhc
Confidence 9999999999987 67889999999999998744
No 6
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=100.00 E-value=2.9e-34 Score=286.07 Aligned_cols=184 Identities=18% Similarity=0.301 Sum_probs=161.3
Q ss_pred CCCCCCEEEEeeC-CEEEEEEeecCCCCCccCCCCceEEEEEEecCCHHHHHHHH-hcCCCCccccccccceeEEEEeec
Q 006638 168 IAPSPWKIFGCQN-GLRLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEAIFQTL-MSLGSSRSEWDFCFYRGCVVEHLD 245 (637)
Q Consensus 168 ~a~~~Wkl~~~kn-GVrIy~~~~~~~~~~~~~s~~~~~Ka~gvV~aspe~VfelL-~D~~~~R~eWD~~~~~~~vVE~ID 245 (637)
....+|++...++ ||+||++..++ .++.+|++++|++|+++||+.| .|.+ .|++||+++.++++|+++|
T Consensus 21 ~~~~~W~l~~~~~~~i~i~~r~~~~--------~~~~~k~~~~i~~~~~~v~~~l~~d~~-~~~~Wd~~~~~~~~i~~~d 91 (208)
T cd08868 21 LTDPGWKLEKNTTWGDVVYSRNVPG--------VGKVFRLTGVLDCPAEFLYNELVLNVE-SLPSWNPTVLECKIIQVID 91 (208)
T ss_pred hcCCCceEEEecCCCCEEEEEEcCC--------CceEEEEEEEEcCCHHHHHHHHHcCcc-ccceecCcccceEEEEEec
Confidence 3455999999997 99999997662 2489999999999999999755 5777 5999999999999999999
Q ss_pred CceEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCC-CCCceEE
Q 006638 246 GHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSN-QGKQSIV 324 (637)
Q Consensus 246 ~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~DGsyvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~-~~~~~~V 324 (637)
++++|+|.++++. +||++++||||++|+|++.+ +.|+|+.+|+.||.+|+++|||||+...+||+|+|++ ++.+|.|
T Consensus 92 ~~~~i~y~~~~~~-~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v 169 (208)
T cd08868 92 DNTDISYQVAAEA-GGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNF 169 (208)
T ss_pred CCcEEEEEEecCc-CCCcccccceEEEEEEEecC-CeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEE
Confidence 9999999888764 56899999999999999865 6799999999999999999999999999999999995 3458999
Q ss_pred EEEEEEeCCCccccccccchhhHHHHHHHHHHHHHHHHHh
Q 006638 325 KHMLAVDWKYWKLYLRPSSARSITIRMLERVAALRELFQA 364 (637)
Q Consensus 325 Tyi~qvDpkGwip~~~~~~~~~i~~~ml~~va~LRe~~~~ 364 (637)
+|++++|||||+|.|+ +...+...+++++.+||++++.
T Consensus 170 ~~~~~~Dp~G~iP~~l--vN~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08868 170 TWLLNTDLKGWLPQYL--VDQALASVLLDFMKHLRKRIAT 207 (208)
T ss_pred EEEEEECCCCCCccee--eehhhHHHHHHHHHHHHHHHhh
Confidence 9999999999999997 3444555667889999999875
No 7
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=100.00 E-value=6.8e-34 Score=284.55 Aligned_cols=189 Identities=19% Similarity=0.211 Sum_probs=162.5
Q ss_pred cccccCCCCCCEEEEee-CCEEEEEEeecCCCCCccCCCCceEEEEEEecCCHHHHH-HHHhcCCCCccccccccceeEE
Q 006638 163 TASDVIAPSPWKIFGCQ-NGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEAIF-QTLMSLGSSRSEWDFCFYRGCV 240 (637)
Q Consensus 163 a~~dv~a~~~Wkl~~~k-nGVrIy~~~~~~~~~~~~~s~~~~~Ka~gvV~aspe~Vf-elL~D~~~~R~eWD~~~~~~~v 240 (637)
+..-+.+.++|++.... |||+||++..+. + ++.||++++|++|+++|| ++|.|++. |++||+++.++++
T Consensus 17 ~~~~l~~~~~W~l~~~~~~gi~V~s~~~~~-------~-~~~fk~~~~v~~~~~~l~~~ll~D~~~-~~~W~~~~~~~~v 87 (209)
T cd08906 17 VEQILAQEENWKFEKNNDNGDTVYTLEVPF-------H-GKTFILKAFMQCPAELVYQEVILQPEK-MVLWNKTVSACQV 87 (209)
T ss_pred HHHHhhcccCCEEEEecCCCCEEEEeccCC-------C-CcEEEEEEEEcCCHHHHHHHHHhChhh-ccccCccchhhhh
Confidence 33445567899998865 999999976552 2 389999999999999998 68899995 9999999999999
Q ss_pred EEeecCceEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeC-CCC
Q 006638 241 VEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPS-NQG 319 (637)
Q Consensus 241 VE~ID~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~DGsyvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl-~~~ 319 (637)
|++++++++|+| .....|++||+++||||++|+|.+.+++ |+++..|+.|+.+||++|||||+++++||.|.|. .++
T Consensus 88 i~~~~~~~~i~Y-~v~~p~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~ 165 (209)
T cd08906 88 LQRVDDNTLVSY-DVAAGAAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNP 165 (209)
T ss_pred eeeccCCcEEEE-EEccccccCCCCCCceEEEEEEEecCCc-EEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCC
Confidence 999999999999 4444456679999999999999998766 8999999999999999999999999999999997 445
Q ss_pred CceEEEEEEEEeCCCccccccccchhhHHHHHHHHHHHHHHHHHh
Q 006638 320 KQSIVKHMLAVDWKYWKLYLRPSSARSITIRMLERVAALRELFQA 364 (637)
Q Consensus 320 ~~~~VTyi~qvDpkGwip~~~~~~~~~i~~~ml~~va~LRe~~~~ 364 (637)
.+|+|||++++|||||+|.|+ .+..++-.+++++.+||++++.
T Consensus 166 ~~t~vt~~~~~Dp~G~lP~~l--vN~~~~~~~~~~~~~LR~~~~~ 208 (209)
T cd08906 166 SVCTFIWILNTDLKGRLPRYL--IHQSLAATMFEFASHLRQRIRD 208 (209)
T ss_pred CceEEEEEEecCCCCCCCHHH--HHHHHHHHHHHHHHHHHHHHhh
Confidence 589999999999999999996 3444555677899999999864
No 8
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=100.00 E-value=2e-33 Score=278.57 Aligned_cols=177 Identities=24% Similarity=0.326 Sum_probs=154.9
Q ss_pred CCCCEEEEeeCCEEEEEEeecCCCCCccCCCCceEEEEEEecCCHHHHHHHHhcCCCCccccccccceeEEEEeecCceE
Q 006638 170 PSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSD 249 (637)
Q Consensus 170 ~~~Wkl~~~knGVrIy~~~~~~~~~~~~~s~~~~~Ka~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~~td 249 (637)
..+|++..+++||+||++..+.. +.++.||++++|++++++|+++|++ .|.+||.++.++++|+++|++++
T Consensus 18 ~~~W~~~~~~~gi~I~~k~~~~~------~~l~~~K~~~~v~a~~~~v~~~l~d---~r~~Wd~~~~~~~vie~id~~~~ 88 (197)
T cd08869 18 SKGWVSVSSSDHVELAFKKVDDG------HPLRLWRASTEVEAPPEEVLQRILR---ERHLWDDDLLQWKVVETLDEDTE 88 (197)
T ss_pred cCCceEEecCCcEEEEEEeCCCC------CcEEEEEEEEEeCCCHHHHHHHHHH---HHhccchhhheEEEEEEecCCcE
Confidence 67999999999999999876421 3578999999999999999999987 48999999999999999999999
Q ss_pred EEEEEeecCCCCCCCCCceEEEEEEEEEc-CCCeEEEEEeecCCC-CCCCCCCeEEEEEeeeeEEEEeCCCCCceEEEEE
Q 006638 250 VVHKLLYSDWLPWGMQRRDLLVRRYWRRE-DDGTYVILYHSVNHK-KCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHM 327 (637)
Q Consensus 250 IvY~~~~~~~~P~pvs~RDFV~lR~wrr~-~DGsyvI~~~SV~Hp-~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~VTyi 327 (637)
|+|.++. .|||+++||||++|+|++. ++|+|+|+++||.|| .+|+ |||||..+.|||+|+|++++ +|+|||+
T Consensus 89 i~y~~~~---~p~pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p~--g~VR~~~~~~g~~i~p~~~~-~t~vty~ 162 (197)
T cd08869 89 VYQYVTN---SMAPHPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVPL--GGVRAVVLASRYLIEPCGSG-KSRVTHI 162 (197)
T ss_pred EEEEEee---CCCCCCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCCC--CCEEEEEEeeeEEEEECCCC-CeEEEEE
Confidence 9998776 3679999999999999875 678899999999995 6776 99999999999999999754 7999999
Q ss_pred EEEeCCCccccccccchhhHHHHHHHHHHHHHHHHHh
Q 006638 328 LAVDWKYWKLYLRPSSARSITIRMLERVAALRELFQA 364 (637)
Q Consensus 328 ~qvDpkGwip~~~~~~~~~i~~~ml~~va~LRe~~~~ 364 (637)
+++|||||+|.|+++...++. ...|..||+.|.+
T Consensus 163 ~~~Dp~G~iP~wl~N~~~~~~---~~~~~~l~~~~~~ 196 (197)
T cd08869 163 CRVDLRGRSPEWYNKVYGHLC---ARELLRIRDSFRQ 196 (197)
T ss_pred EEECCCCCCCceeecchHhHH---HHHHHHHHhhccC
Confidence 999999999999766554443 3458899998864
No 9
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=100.00 E-value=1.3e-32 Score=275.02 Aligned_cols=185 Identities=20% Similarity=0.196 Sum_probs=158.3
Q ss_pred CCCCCEEEEeeCCEEEEEEeecCCCCCccCCCCceEEEEEEecCCHHHHHHHHhcCCC-CccccccccceeEEEEeecCc
Q 006638 169 APSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEAIFQTLMSLGS-SRSEWDFCFYRGCVVEHLDGH 247 (637)
Q Consensus 169 a~~~Wkl~~~knGVrIy~~~~~~~~~~~~~s~~~~~Ka~gvV~aspe~VfelL~D~~~-~R~eWD~~~~~~~vVE~ID~~ 247 (637)
..++|++.+.+|||+||++.... ..+..||++|+|++++++|+++|+|... +|.+||.++.++++||+||++
T Consensus 20 ~~~~W~~~~~~~~i~v~~~~~~~-------~~~~~~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~ 92 (208)
T cd08903 20 DESGWKTCRRTNEVAVSWRPSAE-------FAGNLYKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDD 92 (208)
T ss_pred cccCCEEEEcCCCEEEEeeecCC-------CCCcEEEEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCC
Confidence 46799999999999999985421 1246799999999999999999998743 579999999999999999999
Q ss_pred eEEEEEEeecCCC-CCCCCCceEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCC-CCCceEEE
Q 006638 248 SDVVHKLLYSDWL-PWGMQRRDLLVRRYWRREDDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSN-QGKQSIVK 325 (637)
Q Consensus 248 tdIvY~~~~~~~~-P~pvs~RDFV~lR~wrr~~DGsyvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~-~~~~~~VT 325 (637)
+.|+|..+ .|. .+++++||||++|+|++.+||+|++...|+.||.|||++|||||+.+++||++.|+. ++++|.|+
T Consensus 93 ~~i~~~~~--p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~ 170 (208)
T cd08903 93 VSVCRTVT--PSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLV 170 (208)
T ss_pred EEEEEEec--chhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEE
Confidence 99988632 121 123999999999999999999999999999999999999999999999999999993 34589999
Q ss_pred EEEEEeCCCccccccccchhhHHHHHHHHHHHHHHHHHh
Q 006638 326 HMLAVDWKYWKLYLRPSSARSITIRMLERVAALRELFQA 364 (637)
Q Consensus 326 yi~qvDpkGwip~~~~~~~~~i~~~ml~~va~LRe~~~~ 364 (637)
|++++|||||+|.|+ ....++-.+..++.+||+.++.
T Consensus 171 ~~~~~DpkG~iP~~l--vn~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08903 171 SFFQTDLSGYLPQTV--VDSFFPASMAEFYNNLTKAVKA 207 (208)
T ss_pred EEEEeccCCCcCHHH--HHHHhhHHHHHHHHHHHHHHhh
Confidence 999999999999996 3344555677899999998864
No 10
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=100.00 E-value=1e-32 Score=275.19 Aligned_cols=186 Identities=13% Similarity=0.149 Sum_probs=163.7
Q ss_pred ccccccccCCCCCCEEEEeeCCEEEEEEeecCCCCCccCCCCceEEEEEEecCCHHHHHHHHhcCCCCccccccccceeE
Q 006638 160 SEATASDVIAPSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGC 239 (637)
Q Consensus 160 n~~a~~dv~a~~~Wkl~~~knGVrIy~~~~~~~~~~~~~s~~~~~Ka~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~ 239 (637)
|+.+|....+..+|++.++++||+||+++.++ ..+.||++++|++|+++|+++|.|... |++||.++.+++
T Consensus 11 n~~~l~~~~~~~gW~l~~~~~gI~Vy~k~~~~--------~~~~~~ge~~v~as~~~v~~ll~D~~~-r~~Wd~~~~~~~ 81 (205)
T cd08874 11 NLSNLDQCQATAGWSYQCLEKDVVIYYKVFNG--------TYHGFLGAGVIKAPLATVWKAVKDPRT-RFLYDTMIKTAR 81 (205)
T ss_pred hHHHHHhhhccCCcEEEecCCCEEEEEecCCC--------CcceEEEEEEEcCCHHHHHHHHhCcch-hhhhHHhhhhee
Confidence 88999999999999999999999999997552 357899999999999999999999995 999999999999
Q ss_pred EEEeecCceEEEEEEeecCCCCCCC--CCceEEEEEEEEEcCCCeEEEEEeecCCCCCCCCC-CeEEEEEeeeeEEEEeC
Q 006638 240 VVEHLDGHSDVVHKLLYSDWLPWGM--QRRDLLVRRYWRREDDGTYVILYHSVNHKKCPKQK-GYVRACLKSGGFVITPS 316 (637)
Q Consensus 240 vVE~ID~~tdIvY~~~~~~~~P~pv--s~RDFV~lR~wrr~~DGsyvI~~~SV~Hp~~Pp~~-GyVRaei~~gG~vI~Pl 316 (637)
+|+++++++.|+|+++.. |||+ ++||||+++.|++.++ .++|..+||.||.+|+.+ |||||++++|||+|+|+
T Consensus 82 vl~~~~~d~~i~y~~~~~---Pwp~~~~~RDfV~l~~~~~~~~-~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~ 157 (205)
T cd08874 82 IHKTFTEDICLVYLVHET---PLCLLKQPRDFCCLQVEAKEGE-LSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPV 157 (205)
T ss_pred eeeecCCCeEEEEEEecC---CCCCCCCCCeEEEEEEEEECCC-cEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEEC
Confidence 999999999999988753 5555 9999999999877554 566999999999999996 99999999999999999
Q ss_pred ---CCCCceEEEEEEEEeCC-Cccccccc-cchhhHHHHHHHHHHHHHHHHH
Q 006638 317 ---NQGKQSIVKHMLAVDWK-YWKLYLRP-SSARSITIRMLERVAALRELFQ 363 (637)
Q Consensus 317 ---~~~~~~~VTyi~qvDpk-Gwip~~~~-~~~~~i~~~ml~~va~LRe~~~ 363 (637)
+++ +|+|||++|+||| |-+|.|+. .+....| ..+|.||.++.
T Consensus 158 ~~~g~~-~t~vty~~q~DPggg~iP~~l~N~~~~~~p----~~~~~~~~~~~ 204 (205)
T cd08874 158 TVEGNQ-YTRVIYIAQVALCGPDVPAQLLSSLSKRQP----LVIARLALFLE 204 (205)
T ss_pred ccCCCC-cEEEEEEEEECCCCCCCCHHHHhHHHHhcc----HHHHHHHHHhh
Confidence 444 8999999999999 79999953 3444444 56899998875
No 11
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=100.00 E-value=3.1e-32 Score=271.10 Aligned_cols=182 Identities=16% Similarity=0.203 Sum_probs=157.6
Q ss_pred CCCCEEEEeeCCEEEEEEeecCCCCCccCCCCceEEEEEEecCCHHHHHHHHhc--CCCCccccccccceeEEEEeecCc
Q 006638 170 PSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEAIFQTLMS--LGSSRSEWDFCFYRGCVVEHLDGH 247 (637)
Q Consensus 170 ~~~Wkl~~~knGVrIy~~~~~~~~~~~~~s~~~~~Ka~gvV~aspe~VfelL~D--~~~~R~eWD~~~~~~~vVE~ID~~ 247 (637)
..+|++.+.++|++||++... + ...++||++++|++++++|+++|.+ .. .|.+||..+.++++|++|+++
T Consensus 21 ~~~W~~~~~~~~i~v~~~~~~-~------~~~~~~k~~~~i~~~~~~v~~~l~d~~~~-~r~~Wd~~~~~~~~le~id~~ 92 (206)
T cd08867 21 TDGWKVLKTVKNITVSWKPST-E------FTGHLYRAEGIVDALPEKVIDVIIPPCGG-LRLKWDKSLKHYEVLEKISED 92 (206)
T ss_pred cCCcEEEEcCCCcEEEEecCC-C------CCCEEEEEEEEEcCCHHHHHHHHHhcCcc-ccccccccccceEEEEEeCCC
Confidence 379999999999999998432 1 2347899999999999999999999 45 599999999999999999999
Q ss_pred eEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCC-CCCceEEEE
Q 006638 248 SDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSN-QGKQSIVKH 326 (637)
Q Consensus 248 tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~DGsyvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~-~~~~~~VTy 326 (637)
++|+|..+. ....+++++||||++++|++.++|.|+++.+||+||.+||.+|||||++..|||+|+|+. ++++|.+||
T Consensus 93 ~~i~~~~~p-~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~ 171 (206)
T cd08867 93 LCVGRTITP-SAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVL 171 (206)
T ss_pred eEEEEEEcc-ccccCccCCcceEEEEEEEEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEE
Confidence 999997432 112245999999999999999888999999999999999999999999999999999984 345899999
Q ss_pred EEEEeCCCccccccccchhhHHHHHHHHHHHHHHHH
Q 006638 327 MLAVDWKYWKLYLRPSSARSITIRMLERVAALRELF 362 (637)
Q Consensus 327 i~qvDpkGwip~~~~~~~~~i~~~ml~~va~LRe~~ 362 (637)
++++|||||+|.|+ ....++..++..+..||+++
T Consensus 172 ~~~~DpkG~iP~~l--vn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 172 YVQTDLRGMIPQSL--VESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred EEEeccCCCCcHHH--HHhhhhhhHHHHHHHHHHhc
Confidence 99999999999997 44455566788899999876
No 12
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=100.00 E-value=1.8e-32 Score=269.55 Aligned_cols=180 Identities=13% Similarity=0.188 Sum_probs=161.3
Q ss_pred CCCCCEEEEeeCCEEEEEEeecCCCCCccCCCCceEEEEEEecCCHHHHHHHHhcCCCCccccccccceeEEEEeecCce
Q 006638 169 APSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHS 248 (637)
Q Consensus 169 a~~~Wkl~~~knGVrIy~~~~~~~~~~~~~s~~~~~Ka~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~~t 248 (637)
..++|++.+.++|+.||+++.+. ..++.||++|+|+..+++|++.|.+... |.+||++++++++||+||++|
T Consensus 21 ~~~~Wkl~k~~~~~~v~~k~~~e-------f~gkl~R~Egvv~~~~~ev~d~v~~~~~-r~~Wd~~v~~~~Iie~Id~dt 92 (202)
T cd08902 21 LEEEWRVAKKSKDVTVWRKPSEE-------FGGYLYKAQGVVEDVYNRIVDHIRPGPY-RLDWDSLMTSMDIIEEFEENC 92 (202)
T ss_pred cccCcEEEEeCCCEEEEEecCCc-------CCCceEEEEEEecCCHHHHHHHHhcccc-hhcccchhhheeHhhhhcCCc
Confidence 56899999999999999996642 3579999999999999999999999874 999999999999999999999
Q ss_pred EEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCC-CCCceEEEEE
Q 006638 249 DVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSN-QGKQSIVKHM 327 (637)
Q Consensus 249 dIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~DGsyvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~-~~~~~~VTyi 327 (637)
.|+|+++... +.+.++|||||.++++.+.+||. +++..|++|+..|| |||||+++++||++.|+. ++++|.+||+
T Consensus 93 ~I~~yvt~~~-~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~~~pp--g~VRgen~p~g~i~~Pl~~~p~k~~~t~~ 168 (202)
T cd08902 93 CVMRYTTAGQ-LLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYEEARP--NFVRGFNHPCGWFCVPLKDNPSHSLLTGY 168 (202)
T ss_pred EEEEEEcccC-CcCccCccceEEEEEEEEeCCCe-EEEEeeecCCCCCC--CeEeecccccEEEEEECCCCCCceEEEEE
Confidence 9986554433 45689999999999999988885 77799999999888 999999999999999994 5679999999
Q ss_pred EEEeCCCccccccccchhhHHHHHHHHHHHHHHHH
Q 006638 328 LAVDWKYWKLYLRPSSARSITIRMLERVAALRELF 362 (637)
Q Consensus 328 ~qvDpkGwip~~~~~~~~~i~~~ml~~va~LRe~~ 362 (637)
+|+|||||+|+.+ +++.+|..|+++..+||+.+
T Consensus 169 lq~DLkG~LPqsi--Idq~~~~~~~~F~~~Lrk~~ 201 (202)
T cd08902 169 IQTDLRGMLPQSA--VDTAMASTLVNFYSDLKKAL 201 (202)
T ss_pred EEecCCCCccHHH--HHHHhhHHHHHHHHHHHHhc
Confidence 9999999999876 78899999999999999876
No 13
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=100.00 E-value=2.5e-32 Score=271.74 Aligned_cols=177 Identities=24% Similarity=0.343 Sum_probs=150.2
Q ss_pred CCCEEEEeeCCEEEEEEeecCCCCCccCCCCceEEEEEEecCCHHHHHHHHhcCCCCccccccccceeEEEEeecCceEE
Q 006638 171 SPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDV 250 (637)
Q Consensus 171 ~~Wkl~~~knGVrIy~~~~~~~~~~~~~s~~~~~Ka~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~~tdI 250 (637)
.+|..+...|++.++.+... ++ +..+++|++++|+++|++|+..+.+ +|++||.++.++++||++|+|++|
T Consensus 27 k~w~~~~~~~~~e~~ykK~~-d~-----~~lk~~r~~~ei~~~p~~VL~~vl~---~R~~WD~~~~~~~~ie~ld~~tdi 97 (205)
T cd08909 27 KGWISCSSSDNTELAYKKVG-DG-----NPLRLWKVSVEVEAPPSVVLNRVLR---ERHLWDEDFLQWKVVETLDKQTEV 97 (205)
T ss_pred cCCcccCCcCCeEEEEecCC-CC-----CceEEEEEEEEeCCCHHHHHHHHHh---hHhhHHhhcceeEEEEEeCCCcEE
Confidence 46666666677777543222 11 4678999999999999999998877 599999999999999999999999
Q ss_pred EEEEeecCCCCCCCCCceEEEEEEEEEc-CCCeEEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCceEEEEEEE
Q 006638 251 VHKLLYSDWLPWGMQRRDLLVRRYWRRE-DDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLA 329 (637)
Q Consensus 251 vY~~~~~~~~P~pvs~RDFV~lR~wrr~-~DGsyvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~VTyi~q 329 (637)
+|.+++. |+|+++||||++|+|+++ ++|+|+|+++||.|+++|+. |+|||..+.+||+|+|++++ +|+|||+++
T Consensus 98 ~~y~~~~---~~P~~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~~-g~VRa~~~~~gylI~P~~~g-~trvt~i~~ 172 (205)
T cd08909 98 YQYVLNC---MAPHPSRDFVVLRSWRTDLPKGACSLVSVSVEHEEAPLL-GGVRAVVLDSQYLIEPCGSG-KSRLTHICR 172 (205)
T ss_pred EEEEeec---CCCCCCCEEEEEEEEEEeCCCCcEEEEEecCCCCcCCCC-CcEEEEEEcCcEEEEECCCC-CEEEEEEEE
Confidence 9988874 458999999999999987 68999999999999999995 99999999999999999766 799999999
Q ss_pred EeCCCccccccccchhhHHHHHHHHHHHHHHHHHh
Q 006638 330 VDWKYWKLYLRPSSARSITIRMLERVAALRELFQA 364 (637)
Q Consensus 330 vDpkGwip~~~~~~~~~i~~~ml~~va~LRe~~~~ 364 (637)
+|||||+|.|+++...++. ...++.||+.|..
T Consensus 173 vDpkG~~P~W~~n~~g~~~---~~~~~~~r~sf~~ 204 (205)
T cd08909 173 VDLKGHSPEWYNKGFGHLC---AAEAARIRNSFQP 204 (205)
T ss_pred ecCCCCChHHHHHhHHHHH---HHHHHHHHhhccC
Confidence 9999999999765443432 3568899998853
No 14
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.98 E-value=5.3e-31 Score=265.14 Aligned_cols=182 Identities=21% Similarity=0.310 Sum_probs=157.1
Q ss_pred CCCCCEEEEeeCCEEEEEEeecCCCCCccCCCCceEEEEEEe-cCCHHHHHHHHhcCCCCccccccccceeEEEEeecCc
Q 006638 169 APSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVV-DGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGH 247 (637)
Q Consensus 169 a~~~Wkl~~~knGVrIy~~~~~~~~~~~~~s~~~~~Ka~gvV-~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~~ 247 (637)
...+|+++.+++||+||++..++ +..+.+|+++++ +++++.++++|+|.+ .|.+||+++.++++|++++++
T Consensus 21 ~~~~W~~~~~~~gi~iy~r~~~~-------~~~~~~k~~~~~~~~s~e~~~~~l~D~~-~r~~Wd~~~~e~~~ie~~d~~ 92 (222)
T cd08871 21 STDGWKLKYNKNNVKVWTKNPEN-------SSIKMIKVSAIFPDVPAETLYDVLHDPE-YRKTWDSNMIESFDICQLNPN 92 (222)
T ss_pred CCCCcEEEEcCCCeEEEEeeCCC-------CceEEEEEEEEeCCCCHHHHHHHHHChh-hhhhhhhhhceeEEEEEcCCC
Confidence 45689999999999999987652 356899999987 799999999999988 499999999999999999999
Q ss_pred eEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCceEEEEE
Q 006638 248 SDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHM 327 (637)
Q Consensus 248 tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~DGsyvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~VTyi 327 (637)
++|+|.+++ +|||+++||||++|+|++.+ |.|+|+.+|+.|+.+|+.+|||||.+..+||+|+|++++ +|.|||+
T Consensus 93 ~~i~y~~~~---~P~pvs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~-~t~vt~~ 167 (222)
T cd08871 93 NDIGYYSAK---CPKPLKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPK-GCTLTYV 167 (222)
T ss_pred CEEEEEEeE---CCCCCCCCeEEEEEEEEeCC-CEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCC-CEEEEEE
Confidence 999998775 57899999999999998866 789999999999999999999999999999999999744 7999999
Q ss_pred EEEeCCCcccccc-ccchhhHHHHHHHHHHHHHHHHHhhc
Q 006638 328 LAVDWKYWKLYLR-PSSARSITIRMLERVAALRELFQAKA 366 (637)
Q Consensus 328 ~qvDpkGwip~~~-~~~~~~i~~~ml~~va~LRe~~~~~~ 366 (637)
+++|||||+|.|+ +.+....+. ..+.+||+.+.+.+
T Consensus 168 ~~~Dp~G~IP~~lvN~~~~~~~~---~~l~~l~k~~~~y~ 204 (222)
T cd08871 168 TQNDPKGSLPKWVVNKATTKLAP---KVMKKLHKAALKYP 204 (222)
T ss_pred EecCCCCCcCHHHHHHHHHHHhH---HHHHHHHHHHHHHH
Confidence 9999999999995 333344443 44666666666554
No 15
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=99.98 E-value=2.6e-31 Score=265.86 Aligned_cols=183 Identities=16% Similarity=0.223 Sum_probs=154.7
Q ss_pred CCCCCEEEE-eeCCEEEEEEeecCCCCCccCCCCceEEEEEEecCCHHHHH-HHHhcCCCCccccccccceeEEEEeecC
Q 006638 169 APSPWKIFG-CQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEAIF-QTLMSLGSSRSEWDFCFYRGCVVEHLDG 246 (637)
Q Consensus 169 a~~~Wkl~~-~knGVrIy~~~~~~~~~~~~~s~~~~~Ka~gvV~aspe~Vf-elL~D~~~~R~eWD~~~~~~~vVE~ID~ 246 (637)
...+|++.+ .++|++||++..++ + ++.||++++|++++++|+ .++.|.+ .+++|+.++.++++|+++|+
T Consensus 23 ~~~~W~~~~~~~~gi~v~s~~~~~-------~-~k~~k~e~~i~~~~~~l~~~l~~d~e-~~~~W~~~~~~~~vl~~id~ 93 (209)
T cd08905 23 DQEGWKTEIVAENGDKVLSKVVPD-------I-GKVFRLEVVVDQPLDNLYSELVDRME-QMGEWNPNVKEVKILQRIGK 93 (209)
T ss_pred cccCCEEEEecCCCCEEEEEEcCC-------C-CcEEEEEEEecCCHHHHHHHHHhchh-hhceecccchHHHHHhhcCC
Confidence 456999995 58999999976652 2 389999999999999999 5555777 49999999999999999999
Q ss_pred ceEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCC-CCceEEE
Q 006638 247 HSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQ-GKQSIVK 325 (637)
Q Consensus 247 ~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~DGsyvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~-~~~~~VT 325 (637)
++.|+|... ..|..|++++||||++|+|++.+ +.++++..|+.||.+|+++|||||+...|||+|+|+++ +.+|+|+
T Consensus 94 ~~~i~y~~~-~p~p~~~vs~RD~V~~~~~~~~~-~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~ 171 (209)
T cd08905 94 DTLITHEVA-AETAGNVVGPRDFVSVRCAKRRG-STCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLT 171 (209)
T ss_pred CceEEEEEe-ccCCCCccCccceEEEEEEEEcC-CcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEE
Confidence 999999743 22222459999999999999875 45778889999999999999999999999999999954 3489999
Q ss_pred EEEEEeCCCccccccccchhhHHHHHHHHHHHHHHHHHh
Q 006638 326 HMLAVDWKYWKLYLRPSSARSITIRMLERVAALRELFQA 364 (637)
Q Consensus 326 yi~qvDpkGwip~~~~~~~~~i~~~ml~~va~LRe~~~~ 364 (637)
|++++|||||+|.|+ ....++-.+++++.+||+++..
T Consensus 172 ~~~~~DpkG~iP~~l--vN~~~~~~~~~~~~~Lr~~~~~ 208 (209)
T cd08905 172 WLLSIDLKGWLPKSI--INQVLSQTQVDFANHLRQRMAS 208 (209)
T ss_pred EEEeecCCCCCCHHH--HHHHhHHhHHHHHHHHHHHHhc
Confidence 999999999999996 3344455567889999999873
No 16
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.97 E-value=2.4e-30 Score=255.41 Aligned_cols=185 Identities=26% Similarity=0.310 Sum_probs=156.6
Q ss_pred ccCCCCCCEEEEe-eCCEEEEEEeecCCCCCccCCCCceEEEEEEecCCHHH-HHHHHhcCCCCccccccccceeEEEEe
Q 006638 166 DVIAPSPWKIFGC-QNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEA-IFQTLMSLGSSRSEWDFCFYRGCVVEH 243 (637)
Q Consensus 166 dv~a~~~Wkl~~~-knGVrIy~~~~~~~~~~~~~s~~~~~Ka~gvV~aspe~-VfelL~D~~~~R~eWD~~~~~~~vVE~ 243 (637)
...+..+|++... ++|+.+|++..++. +.+..||++++|++++++ +.+++.|++ .|++||+++.++++||+
T Consensus 14 ~~~~~~~W~~~~~~~~~~~~~~~~~~~~------~~~~~~k~~~~v~~~~~~~~~~~~~d~~-~r~~Wd~~~~~~~~ie~ 86 (206)
T smart00234 14 AAASEPGWVLSSENENGDEVRSILSPGR------SPGEASRAVGVVPMVCADLVEELMDDLR-YRPEWDKNVAKAETLEV 86 (206)
T ss_pred hhCCCCccEEccccCCcceEEEEccCCC------CceEEEEEEEEEecChHHHHHHHHhccc-chhhCchhcccEEEEEE
Confidence 3345678999997 89999999865521 357899999999999987 557788888 59999999999999999
Q ss_pred ecCceEEEEEEeecCCCCC-CCCCceEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCce
Q 006638 244 LDGHSDVVHKLLYSDWLPW-GMQRRDLLVRRYWRREDDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQS 322 (637)
Q Consensus 244 ID~~tdIvY~~~~~~~~P~-pvs~RDFV~lR~wrr~~DGsyvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~ 322 (637)
++++++|+|.++.. || |+++||||++|+|++.++|.|+|+.+|+.||.+|+.+|+|||++..+||+|+|++++ .|
T Consensus 87 ~~~~~~i~~~~~~~---~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~-~t 162 (206)
T smart00234 87 IDNGTVIYHYVSKF---VAGPVSPRDFVFVRYWRELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNG-PS 162 (206)
T ss_pred ECCCCeEEEEEEec---ccCcCCCCeEEEEEEEEEcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCC-Ce
Confidence 99999999987763 55 999999999999999888899999999999999999999999999999999999766 59
Q ss_pred EEEEEEEEeCCCccccccc-cchhhHHHHHHHHHHHHHHHHHh
Q 006638 323 IVKHMLAVDWKYWKLYLRP-SSARSITIRMLERVAALRELFQA 364 (637)
Q Consensus 323 ~VTyi~qvDpkGwip~~~~-~~~~~i~~~ml~~va~LRe~~~~ 364 (637)
+|||+.++|||||+|.|+. .+.+..+. ..+..||+.+..
T Consensus 163 ~vt~~~~~D~~G~iP~~lvn~~~~~~~~---~~~~~~~~~~~~ 202 (206)
T smart00234 163 KVTWVSHADLKGWLPHWLVRSLIKSGLA---EFAKTWVATLQK 202 (206)
T ss_pred EEEEEEEEecCCCccceeehhhhhhhHH---HHHHHHHHHHHH
Confidence 9999999999999999954 34455544 445556665544
No 17
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=99.97 E-value=3.4e-30 Score=262.17 Aligned_cols=185 Identities=18% Similarity=0.239 Sum_probs=151.0
Q ss_pred CCCCEEEEeeCCEEEEEEeecCCCCCccCCCCceEEEEEEec-CCHHHHHHHHhcCCCCccccccccceeEEEEeecCce
Q 006638 170 PSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVD-GTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHS 248 (637)
Q Consensus 170 ~~~Wkl~~~knGVrIy~~~~~~~~~~~~~s~~~~~Ka~gvV~-aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~~t 248 (637)
..+|+++.++|||+||++..+..+. ....+||+++|+ +++++++++|.|.+ +|.+||.++.++++||++++++
T Consensus 25 ~~~W~l~~~~~gikVy~r~~~~sg~-----~~~~~Ka~~~v~~vt~~~~~~~l~D~~-~r~~Wd~~~~~~~vie~l~~~~ 98 (235)
T cd08872 25 ADGWQLFAEEGEMKVYRREVEEDGV-----VLDPLKATHAVKGVTGHEVCHYFFDPD-VRMDWETTLENFHVVETLSQDT 98 (235)
T ss_pred CCCCEEEEeCCceEEEEEECCCCCc-----eeeeEEEEEEECCCCHHHHHHHHhChh-hHHHHHhhhheeEEEEecCCCC
Confidence 4489999999999999997663221 112699999998 89999999999998 5999999999999999999999
Q ss_pred EEEEEEeecCCCCCCCCCceEEEEEEEEEcCC-------CeEEEEEeecCCCCCCCCCCeEEEEEee----ee-------
Q 006638 249 DVVHKLLYSDWLPWGMQRRDLLVRRYWRREDD-------GTYVILYHSVNHKKCPKQKGYVRACLKS----GG------- 310 (637)
Q Consensus 249 dIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~D-------GsyvI~~~SV~Hp~~Pp~~GyVRaei~~----gG------- 310 (637)
+|+|..++ +|||+++||||++++|++.++ +.|++++.|+.||.+|+++||||+.... ++
T Consensus 99 ~I~Y~~~k---~PwPvs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g 175 (235)
T cd08872 99 LIFHQTHK---RVWPAAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDG 175 (235)
T ss_pred EEEEEEcc---CCCCCCCcEEEEEEEEEecCccccccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCC
Confidence 99997665 689999999999999998754 6799999999999999999999999733 33
Q ss_pred -EEEEeCCCCCceEEEEEEEEeCCCccccccccc-hhhHHHHHHHHHHHHHHHHHhhcCC
Q 006638 311 -FVITPSNQGKQSIVKHMLAVDWKYWKLYLRPSS-ARSITIRMLERVAALRELFQAKAGN 368 (637)
Q Consensus 311 -~vI~Pl~~~~~~~VTyi~qvDpkGwip~~~~~~-~~~i~~~ml~~va~LRe~~~~~~~~ 368 (637)
|.++| +++ .|+|||++++|||||+|.|+.+. .+. .....+..|-.|+..+-..
T Consensus 176 ~~~~t~-~~~-~~~ity~~~~dPgG~iP~wvvn~~~k~---~~P~~l~~~~~~~~~~~~~ 230 (235)
T cd08872 176 NQEITR-DNI-LCKITYVANVNPGGWAPASVLRAVYKR---EYPKFLKRFTSYVQEKTKG 230 (235)
T ss_pred cccccC-CCC-eEEEEEEEEeCCCCCccHHHHHHHHHh---hchHHHHHHHHHHHHhcCC
Confidence 44444 233 79999999999999999995332 222 2345677777787766543
No 18
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=99.97 E-value=2.3e-30 Score=255.27 Aligned_cols=177 Identities=22% Similarity=0.318 Sum_probs=151.8
Q ss_pred CCCCEEEEeeCCEEEEEEeecCCCCCccCCCCceEEEEEEecCCHHHHH-HHHhcCCCCccccccccceeEEEEeecCce
Q 006638 170 PSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEAIF-QTLMSLGSSRSEWDFCFYRGCVVEHLDGHS 248 (637)
Q Consensus 170 ~~~Wkl~~~knGVrIy~~~~~~~~~~~~~s~~~~~Ka~gvV~aspe~Vf-elL~D~~~~R~eWD~~~~~~~vVE~ID~~t 248 (637)
..||.....++|+.|+.+..+ ++ ...+++|+...|+++|.+|+ ++|.| |..||.++.+.++||+||+++
T Consensus 26 ~kgW~~~~~~~~vev~~kk~~-d~-----~~l~lwk~s~ei~~~p~~vl~rvL~d----R~~WD~~m~e~~~Ie~Ld~n~ 95 (205)
T cd08907 26 FKGWHSAPGPDNTELACKKVG-DG-----HPLRLWKVSTEVEAPPSVVLQRVLRE----RHLWDEDLLHSQVIEALENNT 95 (205)
T ss_pred cCCceeecCCCCcEEEEEeCC-CC-----CceEEEEEEEEecCCCHHHHHHHhhc----hhhhhHHHHhhhhheeecCCC
Confidence 469999999999999887443 11 46789999999988666555 55554 999999999999999999999
Q ss_pred EEEEEEeecCCCCCCCCCceEEEEEEEEEc-CCCeEEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCceEEEEE
Q 006638 249 DVVHKLLYSDWLPWGMQRRDLLVRRYWRRE-DDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHM 327 (637)
Q Consensus 249 dIvY~~~~~~~~P~pvs~RDFV~lR~wrr~-~DGsyvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~VTyi 327 (637)
+|+|+.+. +|.|+++||||++|+|+.. +.|.|+|+.+||.|++.||.+| |||..+.+||+|+|.+.+ +|+|||+
T Consensus 96 dI~yY~~~---~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~~g-VRa~~l~sgYlIep~g~g-~s~ltyi 170 (205)
T cd08907 96 EVYHYVTD---SMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLEAG-VRAVLLTSQYLIEPCGMG-RSRLTHI 170 (205)
T ss_pred EEEEEEec---CCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCCCC-eEEEEEeccEEEEECCCC-CeEEEEE
Confidence 99998775 4568999999999999865 6678999999999999999999 999999999999999755 7999999
Q ss_pred EEEeCCCccccccccchhhHHHHHHHHHHHHHHHHHh
Q 006638 328 LAVDWKYWKLYLRPSSARSITIRMLERVAALRELFQA 364 (637)
Q Consensus 328 ~qvDpkGwip~~~~~~~~~i~~~ml~~va~LRe~~~~ 364 (637)
.++|++||+|.|+++.-.++ +...+..||+.|..
T Consensus 171 ~rvD~rG~~P~Wynk~~g~~---~a~~l~~ir~sF~~ 204 (205)
T cd08907 171 CRADLRGRSPDWYNKVFGHL---CAMEVARIRDSFPT 204 (205)
T ss_pred EEeCCCCCCcHHHHHhHHHH---HHHHHHHHHhhccC
Confidence 99999999999987654444 33578999998864
No 19
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=99.97 E-value=1e-29 Score=253.92 Aligned_cols=180 Identities=18% Similarity=0.150 Sum_probs=154.0
Q ss_pred CCCCCEEEEeeCCEEEEEEeecCCCCCccCCCCceEEEEEEe-cCCHHHHHHHHhcCCCCccccccccceeEEEEeecC-
Q 006638 169 APSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVV-DGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDG- 246 (637)
Q Consensus 169 a~~~Wkl~~~knGVrIy~~~~~~~~~~~~~s~~~~~Ka~gvV-~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~- 246 (637)
..++|+++.+++||+||++..++ +....||+++++ ++|+++++++|+|.+ .|.+||.++.++++|++.++
T Consensus 19 ~~~~W~l~~~~~~i~Vy~r~~~~-------s~~~~~k~~~~~~d~s~~~~~~~~~D~~-~r~~Wd~~~~~~~~le~~~~~ 90 (207)
T cd08911 19 EPDGWEPFIEKKDMLVWRREHPG-------TGLYEYKVYGSFDDVTARDFLNVQLDLE-YRKKWDATAVELEVVDEDPET 90 (207)
T ss_pred cCCCcEEEEEcCceEEEEeccCC-------CCcEEEEEEEEEcCCCHHHHHHHHhCHH-HHHHHHhhheeEEEEEccCCC
Confidence 45679999999999999997663 356799999977 999999999999998 59999999999999999755
Q ss_pred ceEEEEEEeecCCCCCCCCCceEEEEEEEEEc-CCCeEEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCC--CCCceE
Q 006638 247 HSDVVHKLLYSDWLPWGMQRRDLLVRRYWRRE-DDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSN--QGKQSI 323 (637)
Q Consensus 247 ~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~-~DGsyvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~--~~~~~~ 323 (637)
+++|+|+.++ +|||+++||||+.|.+.++ ++|.|+|+.+|+.||.+|+.+||||+....|+|+|+|+. +.+.|.
T Consensus 91 ~~~i~y~~~~---~P~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~ 167 (207)
T cd08911 91 GSEIIYWEMQ---WPKPFANRDYVYVRRYIIDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFE 167 (207)
T ss_pred CCEEEEEEEE---CCCCCCCccEEEEEEEEEcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeE
Confidence 8999998765 6899999999999998777 456789999999999999999999999999999999994 234699
Q ss_pred EEEEEEEeCCCcccccccc-chhhHHHHHHHHHHHHHHHH
Q 006638 324 VKHMLAVDWKYWKLYLRPS-SARSITIRMLERVAALRELF 362 (637)
Q Consensus 324 VTyi~qvDpkGwip~~~~~-~~~~i~~~ml~~va~LRe~~ 362 (637)
++|+.+.|||||+|.|+.+ +.+.. +...+.+|++-+
T Consensus 168 ~~~~~~~dPgG~IP~~lvN~~~~~~---~~~~l~~l~~a~ 204 (207)
T cd08911 168 FVLTYFDNPGVNIPSYITSWVAMSG---MPDFLERLRNAA 204 (207)
T ss_pred EEEEEEeCCCCccCHHHHHHHHHhh---ccHHHHHHHHHH
Confidence 9999999999999999633 33443 345577777654
No 20
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.96 E-value=2.7e-28 Score=240.17 Aligned_cols=187 Identities=28% Similarity=0.467 Sum_probs=154.9
Q ss_pred CCCCCCEEEEeeCCEEEEEE-eecCCCCCccCCCCceEEEEEEecCCHHHHHHHHhcCCCCccccccccceeEEEEeecC
Q 006638 168 IAPSPWKIFGCQNGLRLFKE-AKDWDSRGRHWDDHPAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDG 246 (637)
Q Consensus 168 ~a~~~Wkl~~~knGVrIy~~-~~~~~~~~~~~s~~~~~Ka~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~ 246 (637)
....+|++..++++..++.. ..+.++ ..+..+|++++|++++++++..|++.. . +||+.+.++++||++++
T Consensus 16 ~~~~~W~~~~~~~~~~~~~~~~~~~~~-----~~~~~~k~~~~v~~~~~~~~~~~~~~~--~-~Wd~~~~~~~~le~~~~ 87 (206)
T PF01852_consen 16 EDEDGWKLYKDKKNGDVYYKKVSPSDS-----CPIKMFKAEGVVPASPEQVVEDLLDDR--E-QWDKMCVEAEVLEQIDE 87 (206)
T ss_dssp HTCTTCEEEEEETTTCEEEEEEECSSS-----TSCEEEEEEEEESSCHHHHHHHHHCGG--G-HHSTTEEEEEEEEEEET
T ss_pred cCCCCCeEeEccCCCeEEEEEeCcccc-----ccceEEEEEEEEcCChHHHHHHHHhhH--h-hcccchhhheeeeecCC
Confidence 45689999996655555443 333211 257899999999999999999988744 2 99999999999999999
Q ss_pred ceEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeEEEEEeecCCCCCCC-CCCeEEEEEeeeeEEEEeCCCCCceEEE
Q 006638 247 HSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTYVILYHSVNHKKCPK-QKGYVRACLKSGGFVITPSNQGKQSIVK 325 (637)
Q Consensus 247 ~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~DGsyvI~~~SV~Hp~~Pp-~~GyVRaei~~gG~vI~Pl~~~~~~~VT 325 (637)
+++|+|.++...+ |+|+++||||++|++++..+|.|+|+.+|++||.+|+ .+|+|||++..+||+|+|++++ .|+||
T Consensus 88 ~~~i~~~~~~~~~-~~p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~-~~~vt 165 (206)
T PF01852_consen 88 DTDIVYFVMKSPW-PGPVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDG-RTRVT 165 (206)
T ss_dssp TEEEEEEEEE-CT-TTTSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTC-EEEEE
T ss_pred CCeEEEEEecccC-CCCCCCcEEEEEEEEEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCC-CceEE
Confidence 9999999877542 4499999999999999988899999999999999999 8999999999999999999776 69999
Q ss_pred EEEEEeCCCccccccccchhhHHHHHHHHHHHHHHHHHhhc
Q 006638 326 HMLAVDWKYWKLYLRPSSARSITIRMLERVAALRELFQAKA 366 (637)
Q Consensus 326 yi~qvDpkGwip~~~~~~~~~i~~~ml~~va~LRe~~~~~~ 366 (637)
|+.++|||||+|.|+.+ ..+...+.+.+..||+.++...
T Consensus 166 ~~~~~D~~G~iP~~~~n--~~~~~~~~~~~~~~~~~~~~~~ 204 (206)
T PF01852_consen 166 YVSQVDPKGWIPSWLVN--MVVKSQPPNFLKNLRKALKKQK 204 (206)
T ss_dssp EEEEEESSSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCChHHHHH--HHHHHhHHHHHHHHHHHHHHhc
Confidence 99999999999988632 2233345677899999998764
No 21
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=99.96 E-value=1.1e-28 Score=246.50 Aligned_cols=178 Identities=16% Similarity=0.206 Sum_probs=150.4
Q ss_pred CCCCCEEEEeeCCEEEEEEeecCCCCCccCCCCceEEEEEEec-CCHHHHHHHHhcCCCCccccccccceeEEEEeecCc
Q 006638 169 APSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVD-GTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGH 247 (637)
Q Consensus 169 a~~~Wkl~~~knGVrIy~~~~~~~~~~~~~s~~~~~Ka~gvV~-aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~~ 247 (637)
+..+|+++.+++||+||++..++ +..+.||++++++ +++++++++|+|.+ +|.+||.++.+ +++..+++
T Consensus 23 ~~~~W~l~~~~~~i~Vy~r~~~~-------s~~~~~k~~~~~~~~s~~~~~~~l~D~~-~r~~Wd~~~~~--~~~~~~~~ 92 (207)
T cd08910 23 DGAAWELLVESSGISIYRLLDEQ-------SGLYEYKVFGVLEDCSPSLLADVYMDLE-YRKQWDQYVKE--LYEKECDG 92 (207)
T ss_pred CCCCeEEEEecCCeEEEEeccCC-------CCcEEEEEEEEEcCCCHHHHHHHHhCHH-HHHHHHHHHHh--heeecCCC
Confidence 34679999999999999986653 4568999999998 79999999999998 59999999987 78888889
Q ss_pred eEEEEEEeecCCCCCCCCCceEEEEEEEEEc-CCC--eEEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCceEE
Q 006638 248 SDVVHKLLYSDWLPWGMQRRDLLVRRYWRRE-DDG--TYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIV 324 (637)
Q Consensus 248 tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~-~DG--syvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~V 324 (637)
++|+|+.++ +|||+++||||++|+++.. .+| .++|+.+|+.||.+|+++|+||+....++|+|+|.+++ .|++
T Consensus 93 ~~i~y~~~k---~PwPvs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~-~t~i 168 (207)
T cd08910 93 ETVIYWEVK---YPFPLSNRDYVYIRQRRDLDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKK-GSKV 168 (207)
T ss_pred CEEEEEEEE---cCCCCCCceEEEEEEeccccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCC-ceEE
Confidence 999998776 5899999999999887643 334 46889999999999999999999999999999998654 6999
Q ss_pred EEEEEEeCCCcccccccc-chhhHHHHHHHHHHHHHHHHH
Q 006638 325 KHMLAVDWKYWKLYLRPS-SARSITIRMLERVAALRELFQ 363 (637)
Q Consensus 325 Tyi~qvDpkGwip~~~~~-~~~~i~~~ml~~va~LRe~~~ 363 (637)
+|+.+.||||++|.|+.+ +.+.. +...+.+||+-+.
T Consensus 169 ~~~~~~DPgG~IP~wlvN~~~~~~---~~~~l~~l~ka~~ 205 (207)
T cd08910 169 FMYYFDNPGGMIPSWLINWAAKNG---VPNFLKDMQKACQ 205 (207)
T ss_pred EEEEEeCCCCcchHHHHHHHHHHh---hHHHHHHHHHHHh
Confidence 999999999999999633 33333 3456777877653
No 22
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=99.96 E-value=1.1e-28 Score=245.71 Aligned_cols=174 Identities=20% Similarity=0.285 Sum_probs=147.8
Q ss_pred CCCEEEEeeCCEEEEEEeecCCCCCccCCCCceEEEEEEecCCHHHHHHHHhcCCCCccccccccceeEEEEeecCceEE
Q 006638 171 SPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDV 250 (637)
Q Consensus 171 ~~Wkl~~~knGVrIy~~~~~~~~~~~~~s~~~~~Ka~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~~tdI 250 (637)
.||..+...|++.++.+..+ + +++.+.+|++++++++|++|+.+|.|. |.+||.++.++++|+++|++++|
T Consensus 27 k~w~~~~~~~~~el~~~k~~-~-----gs~l~~~r~~~~i~a~~~~vl~~lld~---~~~Wd~~~~e~~vIe~ld~~~~I 97 (204)
T cd08908 27 KGWVSYSTSEQAELSYKKVS-E-----GPPLRLWRTTIEVPAAPEEILKRLLKE---QHLWDVDLLDSKVIEILDSQTEI 97 (204)
T ss_pred cCCcccCCCCcEEEEEeccC-C-----CCCcEEEEEEEEeCCCHHHHHHHHHhh---HHHHHHHhhheEeeEecCCCceE
Confidence 35666666666666544322 1 257899999999999999999999873 89999999999999999999999
Q ss_pred EEEEeecCCCCCCCCCceEEEEEEEEEc-CCCeEEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCceEEEEEEE
Q 006638 251 VHKLLYSDWLPWGMQRRDLLVRRYWRRE-DDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLA 329 (637)
Q Consensus 251 vY~~~~~~~~P~pvs~RDFV~lR~wrr~-~DGsyvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~VTyi~q 329 (637)
+|+++. .|||+++||||++|.|+.. ++|.|+|..+|+.|+.+|+. +|||....|||+|+|++++ +|+|||+++
T Consensus 98 ~Yy~~~---~PwP~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P~~--~VR~~~~~~~w~i~P~g~g-~t~vtyi~~ 171 (204)
T cd08908 98 YQYVQN---SMAPHPARDYVVLRTWRTNLPKGACALLATSVDHDRAPVA--GVRVNVLLSRYLIEPCGSG-KSKLTYMCR 171 (204)
T ss_pred EEEEcc---CCCCCCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCCcC--ceEEEEEeeEEEEEECCCC-cEEEEEEEE
Confidence 997765 5789999999999999864 78899999999999999976 6999999999999999765 799999999
Q ss_pred EeCCCcccccccc-chhhHHHHHHHHHHHHHHHHH
Q 006638 330 VDWKYWKLYLRPS-SARSITIRMLERVAALRELFQ 363 (637)
Q Consensus 330 vDpkGwip~~~~~-~~~~i~~~ml~~va~LRe~~~ 363 (637)
+||||++|.|+.+ +++.|+ ..+.+||+.|.
T Consensus 172 ~DPgG~iP~W~~N~~g~~~~----~~~~~~r~sf~ 202 (204)
T cd08908 172 IDLRGHMPEWYTKSFGHLCA----AEVVKIRDSFS 202 (204)
T ss_pred eCCCCCCcHHHHhhHHHHHH----HHHHHHHhhcc
Confidence 9999999999755 445443 56889999985
No 23
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=99.96 E-value=8e-28 Score=240.35 Aligned_cols=179 Identities=16% Similarity=0.181 Sum_probs=154.5
Q ss_pred CCCEEEEeeCC----EEEEEEeecCCCCCccCCCCceEEEEEEe-cCCHHHHHHHHhcCCCCccccccccceeEEEEeec
Q 006638 171 SPWKIFGCQNG----LRLFKEAKDWDSRGRHWDDHPAIMAVGVV-DGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLD 245 (637)
Q Consensus 171 ~~Wkl~~~knG----VrIy~~~~~~~~~~~~~s~~~~~Ka~gvV-~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID 245 (637)
.+|+++.+++| |+||++..++ +....||+++++ ++|+++++++|+|.+ +|++||.++.++++|+..+
T Consensus 22 ~~W~~~~~k~~~~~~i~vy~r~~~~-------s~~~~~k~~~~~~~~s~~~~~~~l~D~~-~r~~Wd~~~~~~~~le~~~ 93 (209)
T cd08870 22 QAWQQVMDKSTPDMSYQAWRRKPKG-------TGLYEYLVRGVFEDCTPELLRDFYWDDE-YRKKWDETVIEHETLEEDE 93 (209)
T ss_pred CcceEhhhccCCCceEEEEecccCC-------CCceEEEEEEEEcCCCHHHHHHHHcChh-hHhhhhhheeeEEEEEecC
Confidence 68999999999 9999997653 346899999999 569999999999998 5999999999999999965
Q ss_pred C-ceEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCC-CCCceE
Q 006638 246 G-HSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSN-QGKQSI 323 (637)
Q Consensus 246 ~-~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~DGsyvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~-~~~~~~ 323 (637)
+ +++|+|..++ +|||+++||||+.|.++...+|.++|..+|+.||.+|+. |+||+....++|+|+|+. ++.+|.
T Consensus 94 ~~~~~i~y~~~~---~P~P~s~RD~V~~r~~~~~~~~~~~i~~~sv~~~~~P~~-~~vRv~~~~~~~~i~p~~~~~~~t~ 169 (209)
T cd08870 94 KSGTEIVRWVKK---FPFPLSDREYVIARRLWESDDRSYVCVTKGVPYPSVPRS-GRKRVDDYESSLVIRAVKGDGQGSA 169 (209)
T ss_pred CCCcEEEEEEEE---CCCcCCCceEEEEEEEEEcCCCEEEEEEeCCcCCCCCCC-CcEEEEEEEeEEEEEEecCCCCceE
Confidence 4 5899998776 689999999999998888778899999999999999999 999999999999999992 334799
Q ss_pred EEEEEEEeCCCccccccccchhhHHHHHHHHHHHHHHHHH
Q 006638 324 VKHMLAVDWKYWKLYLRPSSARSITIRMLERVAALRELFQ 363 (637)
Q Consensus 324 VTyi~qvDpkGwip~~~~~~~~~i~~~ml~~va~LRe~~~ 363 (637)
++|+++.||+|+||.|+.+.. ....+...+.+||+.+.
T Consensus 170 ~~~~~~~dp~G~IP~wlvN~~--~~~~~~~~l~~l~~a~~ 207 (209)
T cd08870 170 CEVTYFHNPDGGIPRELAKLA--VKRGMPGFLKKLENALR 207 (209)
T ss_pred EEEEEEECCCCCCCHHHHHHH--HHhhhHHHHHHHHHHHh
Confidence 999999999999999964432 22234567888888764
No 24
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.96 E-value=4.3e-27 Score=226.86 Aligned_cols=158 Identities=34% Similarity=0.559 Sum_probs=145.4
Q ss_pred CCCEEEEeeCCEEEEEEeecCCCCCccCCCCceEEEEEEecCCHHHHHHHHhcCCCCccccccccceeEEEEeecCceEE
Q 006638 171 SPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDV 250 (637)
Q Consensus 171 ~~Wkl~~~knGVrIy~~~~~~~~~~~~~s~~~~~Ka~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~~tdI 250 (637)
.+|++..+++|++||.+..+. +....+|++++|++|+++|+++|.|.+. |++||+.+.++++|+.+++++.|
T Consensus 15 ~~W~~~~~~~~v~vy~~~~~~-------~~~~~~k~~~~i~~~~~~v~~~l~d~~~-~~~w~~~~~~~~vl~~~~~~~~i 86 (193)
T cd00177 15 EGWKLVKEKDGVKIYTKPYED-------SGLKLLKAEGVIPASPEQVFELLMDIDL-RKKWDKNFEEFEVIEEIDEHTDI 86 (193)
T ss_pred CCeEEEEECCcEEEEEecCCC-------CCceeEEEEEEECCCHHHHHHHHhCCch-hhchhhcceEEEEEEEeCCCeEE
Confidence 489999999999999987652 3468999999999999999999999884 99999999999999999999999
Q ss_pred EEEEeecCCCCCCCCCceEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCceEEEEEEEE
Q 006638 251 VHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAV 330 (637)
Q Consensus 251 vY~~~~~~~~P~pvs~RDFV~lR~wrr~~DGsyvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~VTyi~qv 330 (637)
+|.+++ .|||+++||||+++++.+..+|.++++.+|+.|+.+|+.+++|||.+..+||+|+|++++ .|+|||++++
T Consensus 87 ~~~~~~---~p~p~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~-~~~vt~~~~~ 162 (193)
T cd00177 87 IYYKTK---PPWPVSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPG-KTKVTYVLQV 162 (193)
T ss_pred EEEEee---CCCccCCccEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCC-CEEEEEEEee
Confidence 998876 467899999999999998887899999999999999999999999999999999999544 8999999999
Q ss_pred eCCCcccccc
Q 006638 331 DWKYWKLYLR 340 (637)
Q Consensus 331 DpkGwip~~~ 340 (637)
||+||+|.|+
T Consensus 163 D~~g~iP~~~ 172 (193)
T cd00177 163 DPKGSIPKSL 172 (193)
T ss_pred CCCCCccHHH
Confidence 9999999885
No 25
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.96 E-value=2.6e-27 Score=232.39 Aligned_cols=182 Identities=21% Similarity=0.327 Sum_probs=155.3
Q ss_pred cccCCCCCCEEEEeeCCEEEEEEeecCCCCCccCCCCceEEEEEEecCCHHHHHHHHhcCCCCccccccccceeEEEEee
Q 006638 165 SDVIAPSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHL 244 (637)
Q Consensus 165 ~dv~a~~~Wkl~~~knGVrIy~~~~~~~~~~~~~s~~~~~Ka~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~I 244 (637)
+.+.+..+|+++.+++||+||++..++ +....+|++++|+++|++|++++.|++. |++||+.+.++++||++
T Consensus 11 ~~~~~~~~W~~~~~~~~v~v~~~~~~~-------~~~~~~k~~~~i~~s~e~v~~vi~d~e~-~~~w~~~~~~~~vie~~ 82 (195)
T cd08876 11 AALAPDGDWQLVKDKDGIKVYTRDVEG-------SPLKEFKAVAEVDASIEAFLALLRDTES-YPQWMPNCKESRVLKRT 82 (195)
T ss_pred cccCCCCCCEEEecCCCeEEEEEECCC-------CCeEEEEEEEEEeCCHHHHHHHHhhhHh-HHHHHhhcceEEEeecC
Confidence 344455679999999999999987652 2358999999999999999999999995 99999999999999999
Q ss_pred cCceEEEEEEeecCCCCCCCCCceEEEEEEEEEcC-CCeEEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCceE
Q 006638 245 DGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRRED-DGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSI 323 (637)
Q Consensus 245 D~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~-DGsyvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~ 323 (637)
+++++++|..+. +|||+++||||+.+.++... ++.++|...|+.|+ +|+.+||||+....+||.|+|++++ +|+
T Consensus 83 ~~~~~i~~~~~~---~p~pvs~Rdfv~~~~~~~~~~~~~~~i~~~s~~~~-~P~~~~~vR~~~~~~~~~i~~~~~~-~t~ 157 (195)
T cd08876 83 DDNERSVYTVID---LPWPVKDRDMVLRSTTEQDADDGSVTITLEAAPEA-LPEQKGYVRIKTVEGQWTFTPLGNG-KTR 157 (195)
T ss_pred CCCcEEEEEEEe---cccccCCceEEEEEEEEEcCCCCEEEEEeecCCcc-CCCCCCeEEceeceeeEEEEECCCC-eEE
Confidence 998999998775 47789999999988777654 78899999999988 8999999999999999999999754 799
Q ss_pred EEEEEEEeCCCcccccccc-chhhHHHHHHHHHHHHHHHH
Q 006638 324 VKHMLAVDWKYWKLYLRPS-SARSITIRMLERVAALRELF 362 (637)
Q Consensus 324 VTyi~qvDpkGwip~~~~~-~~~~i~~~ml~~va~LRe~~ 362 (637)
|+|++++||+||+|.|+.+ ..... +...+++||+.+
T Consensus 158 vt~~~~~dp~g~iP~~lv~~~~~~~---~~~~l~~l~~~~ 194 (195)
T cd08876 158 VTYQAYADPGGSIPGWLANAFAKDA---PYNTLENLRKQL 194 (195)
T ss_pred EEEEEEeCCCCCCCHHHHHHHHHHH---HHHHHHHHHHhh
Confidence 9999999999999998533 33333 335578888764
No 26
>PF07059 DUF1336: Protein of unknown function (DUF1336); InterPro: IPR009769 This entry represents the C terminus (approximately 250 residues) of a number of hypothetical plant proteins of unknown function.
Probab=99.94 E-value=2.5e-27 Score=239.59 Aligned_cols=100 Identities=37% Similarity=0.612 Sum_probs=90.6
Q ss_pred eeccCCCceEEecccccccCccccCCCCcceeeeeeeeecCCcchhhhcCCCchhHHhhhcCCCceEEEEEEEeCC----
Q 006638 528 WAAADPSTFLIRGENYLKDHRKIKADGTLMQMIGADWLRSNKREDNLAARPCSLVQKYAAGGGPEFFFVVNIQFPG---- 603 (637)
Q Consensus 528 Ws~p~~~~F~VRG~~Yl~Dk~Kvpa~~~l~~lvgvD~f~~~~~~dhia~~~~~~vq~~~~~~~~~f~fivNiqvPg---- 603 (637)
||+|++++|+|||+|||+||+|||||++||+|+|||||++++|+||||+|+++++|...+++ .||+|||||||||
T Consensus 1 Ws~p~~~~FkVRG~~Yl~DkkKvpa~~~l~~lvgvDlf~s~~~~~hia~~~~~~~~~~~~~~-~P~~fIVNlqvP~~p~~ 79 (227)
T PF07059_consen 1 WSEPDASTFKVRGPNYLKDKKKVPAGPPLFELVGVDLFKSDKKIDHIARRPSSPVQKALEKG-VPFTFIVNLQVPGYPPS 79 (227)
T ss_pred CCCCCCCEEEEeCCCcccCCCCCcCCCcceeeEEEEEEecCCcchhhhhCcCCccccccccC-CCcEEEEEEEccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999998885 5799999999999
Q ss_pred ------C-CceeEEEec-ccccCC------Cchhhhhcc
Q 006638 604 ------V-MDSQAECWE-DGLLAG------ASTRSQLLS 628 (637)
Q Consensus 604 ------~-~~s~V~y~~-~~~~~~------~s~~~~~~~ 628 (637)
. +||+|+||+ .....+ .+++.+|++
T Consensus 80 ~f~~~~~~~~s~V~Yf~~~~~~~~~~~~~~~~ll~rF~~ 118 (227)
T PF07059_consen 80 MFGEIDGPGYSLVLYFRMPEPIEDDDSPPFGRLLHRFLN 118 (227)
T ss_pred cccccccCCceEEEEEecCCccccccCchhHHHHHHHHh
Confidence 6 999999999 333433 567777765
No 27
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.93 E-value=1.2e-25 Score=225.17 Aligned_cols=187 Identities=21% Similarity=0.291 Sum_probs=158.9
Q ss_pred ccccccCCCCCCEEEEeeCCEEEEEEeecCCCCCccCCCCceEEEEEEecCCHHHHHHHHhcCCCCccccccccceeEEE
Q 006638 162 ATASDVIAPSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVV 241 (637)
Q Consensus 162 ~a~~dv~a~~~Wkl~~~knGVrIy~~~~~~~~~~~~~s~~~~~Ka~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vV 241 (637)
.++.++-+..+|++..+++||+||.+..+. +..+.+|++|+|++|++.++++|.|.+ .+++|++.+.++++|
T Consensus 13 ~~~~~l~~~~~W~~~~~~~~i~v~~r~~~~-------~~~~~~k~e~~i~~~~~~~~~vl~d~~-~~~~W~p~~~~~~~l 84 (215)
T cd08877 13 ENLKDLDESDGWTLQKESEGIRVYYKFEPD-------GSLLSLRMEGEIDGPLFNLLALLNEVE-LYKTWVPFCIRSKKV 84 (215)
T ss_pred HHHhcccCCCCcEEeccCCCeEEEEEeCCC-------CCEEEEEEEEEecCChhHeEEEEehhh-hHhhhcccceeeEEE
Confidence 345666668899999999999999987652 346899999999999999999999998 599999999999999
Q ss_pred EeecCceEEEEEEeecCCCCCCCCCceEEEEEE-EEEc-CCCeEEEEEeecCCCC---------CCCCC-CeEEEEEeee
Q 006638 242 EHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRY-WRRE-DDGTYVILYHSVNHKK---------CPKQK-GYVRACLKSG 309 (637)
Q Consensus 242 E~ID~~tdIvY~~~~~~~~P~pvs~RDFV~lR~-wrr~-~DGsyvI~~~SV~Hp~---------~Pp~~-GyVRaei~~g 309 (637)
++++.++.|+|+.+. +|||+++||+|+... ..+. ++|+++|+.+|+.|+. +|+.+ |+||+....+
T Consensus 85 ~~~~~~~~v~y~~~~---~PwPv~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~ 161 (215)
T cd08877 85 KQLGRADKVCYLRVD---LPWPLSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYY 161 (215)
T ss_pred eecCCceEEEEEEEe---CceEecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecc
Confidence 999999999998765 689999999998633 2333 7899999999999876 79999 9999999999
Q ss_pred eEEEEeCCCCCceEEEEEEEEeCCCc-ccccccc-chhhHHHHHHHHHHHHHHHHH
Q 006638 310 GFVITPSNQGKQSIVKHMLAVDWKYW-KLYLRPS-SARSITIRMLERVAALRELFQ 363 (637)
Q Consensus 310 G~vI~Pl~~~~~~~VTyi~qvDpkGw-ip~~~~~-~~~~i~~~ml~~va~LRe~~~ 363 (637)
||+|+|++++ +|.|+|+.++||||+ +|.|+.+ +.+.++..+ +.+||+.++
T Consensus 162 ~~~i~p~~~~-~t~v~~~~~~DP~g~~IP~~liN~~~k~~~~~~---~~~l~k~~~ 213 (215)
T cd08877 162 GFVITPISPT-KCYLRFVANVDPKMSLVPKSLLNFVARKFAGLL---FEKIQKAAK 213 (215)
T ss_pred eEEEEEcCCC-CeEEEEEEEcCCCcccCCHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 9999999765 799999999999998 9999544 446666544 666766654
No 28
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=99.88 E-value=1.4e-21 Score=193.84 Aligned_cols=165 Identities=19% Similarity=0.200 Sum_probs=143.4
Q ss_pred cCCCCCCEEEEeeCCEEEEEEeecCCCCCccCCCCceEEEEEEe-cCCHHHHHHHHhcCCCCccccccccceeEEEEeec
Q 006638 167 VIAPSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVV-DGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLD 245 (637)
Q Consensus 167 v~a~~~Wkl~~~knGVrIy~~~~~~~~~~~~~s~~~~~Ka~gvV-~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID 245 (637)
..+..+|+++.+++++.||....+. +....+|+.++. ++||+.|+++++|.+ +|++||.++.+.++||...
T Consensus 25 ~~~~~~We~~~~k~~~~i~~q~~~~-------~g~~~Yk~~~vfeDvtp~~~~Dv~~D~e-YRkkWD~~vi~~e~ie~d~ 96 (219)
T KOG2761|consen 25 CDAGQGWELVMDKSTPSIWRQRRPK-------TGLYEYKSRTVFEDVTPEIVRDVQWDDE-YRKKWDDMVIELETIEEDP 96 (219)
T ss_pred cCcccchhhhcccCCceEEEEcccC-------CCCEEEEEEEEEcCCCHHHHHHHHhhhH-HHHHHHHHhhhheeeeecC
Confidence 4566799999999999999833331 235799999998 689999999999998 8999999999999999875
Q ss_pred -CceEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCeEEEEEeeeeEEEE-eC--CCCCc
Q 006638 246 -GHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVIT-PS--NQGKQ 321 (637)
Q Consensus 246 -~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~DGsyvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~-Pl--~~~~~ 321 (637)
-+++|+|+..+ +|.|+++||||++|.|...++..|+|+.+||.||+.|+++++||+....+||+|+ |. ++++.
T Consensus 97 ~tg~~vv~w~~k---fP~p~~~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I~~~~~~~~~~~ 173 (219)
T KOG2761|consen 97 VTGTEVVYWVKK---FPFPMSNRDYVYVRRWWESDEKDYYIVSKSVQHPSYPPLKKKVRVTVYRSGWLIRVESRSGDEQG 173 (219)
T ss_pred CCCceEEEEEEe---CCcccCCccEEEEEEEEecCCceEEEEEecccCCCcCCcCCcEEEEEEEEEEEEEcccccCCCCc
Confidence 56789998766 6789999999999988877656799999999999999999999999999999999 55 44567
Q ss_pred eEEEEEEEEeCCCcccccccc
Q 006638 322 SIVKHMLAVDWKYWKLYLRPS 342 (637)
Q Consensus 322 ~~VTyi~qvDpkGwip~~~~~ 342 (637)
|.+.|+++.||+|-+|.|+.+
T Consensus 174 ~~~~~~~~~~p~~~iP~~~v~ 194 (219)
T KOG2761|consen 174 CACEYLYFHNPGGGIPKWVVK 194 (219)
T ss_pred cEEEEEEEECCCCCCcHHHHH
Confidence 999999999999999988643
No 29
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=99.57 E-value=5.3e-15 Score=159.02 Aligned_cols=169 Identities=17% Similarity=0.246 Sum_probs=138.8
Q ss_pred cccccccCCCCCCEEEEeeCCEEEEEEeecCCCCCccCCCCceEEEEEEe-cCCHHHHHHHHhcCCCCccccccccceeE
Q 006638 161 EATASDVIAPSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVV-DGTSEAIFQTLMSLGSSRSEWDFCFYRGC 239 (637)
Q Consensus 161 ~~a~~dv~a~~~Wkl~~~knGVrIy~~~~~~~~~~~~~s~~~~~Ka~gvV-~aspe~VfelL~D~~~~R~eWD~~~~~~~ 239 (637)
.+.+.++...+.|+++...+-+++|++..+..+. .....||...| .+++.++++++.+.+ .|.+|+.+++.+.
T Consensus 393 ~~~~~~~g~d~nwqlFaeegemkmy~re~eeng~-----~~Dplka~hav~gvta~e~chyf~~~~-~rndwettle~~~ 466 (611)
T KOG1739|consen 393 TYSLQDVGGDANWQLFAEEGEMKMYRREVEENGI-----VLDPLKATHAVKGVTAHEVCHYFWNVD-VRNDWETTLENFH 466 (611)
T ss_pred hhhcccccccchhhhhcccCCccccceeeccCCc-----ccCccccchhhcchhHHHHHHHHcChh-hhcchhhhhhhce
Confidence 3667777777789999999999999998774443 34567777654 579999999999998 6999999999999
Q ss_pred EEEeecCceEEEEEEeecCCCCCCCCCceEEEEEEEEEcC----C--CeEEEEEeecCCCCCCCCCCeEEEEEeeee---
Q 006638 240 VVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRRED----D--GTYVILYHSVNHKKCPKQKGYVRACLKSGG--- 310 (637)
Q Consensus 240 vVE~ID~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~----D--GsyvI~~~SV~Hp~~Pp~~GyVRaei~~gG--- 310 (637)
|||+|.+++-|+|++.+.. ||.++||-.++.++|+-+ + +.|++|+.|+.|.+.|....+||+.+..+-
T Consensus 467 vve~is~d~~~~~qthkrv---wpasqrd~lf~shirki~~~~e~gad~wivcn~s~~~a~~pl~n~cvr~~ltv~micq 543 (611)
T KOG1739|consen 467 VVETISDDAIIIYQTHKRV---WPASQRDVLFLSHIRKIPALTENGADTWIVCNFSVDHASAPLNNRCVRAKLTVAMICQ 543 (611)
T ss_pred eeeeecCCeEEEEeccccc---CCCCcchhHHHHHHhhcccccCCCCceEEEecCccccccCccCCceEEEeeeeeeeee
Confidence 9999999999999877654 699999999999888742 2 469999999999999999999999876532
Q ss_pred ------EEEEeCC-CCCceEEEEEEEEeCCCcccc
Q 006638 311 ------FVITPSN-QGKQSIVKHMLAVDWKYWKLY 338 (637)
Q Consensus 311 ------~vI~Pl~-~~~~~~VTyi~qvDpkGwip~ 338 (637)
++=+|++ +.-.|++||+.+++||||.|.
T Consensus 544 t~v~~p~~~q~l~rdd~~ckityvs~vnpggwapa 578 (611)
T KOG1739|consen 544 TLVSPPEGNQELSRDDILCKITYVSNVNPGGWAPA 578 (611)
T ss_pred cccCCcccCCcccccceeEEEEEEeeeCCCCcccH
Confidence 1223331 234899999999999999994
No 30
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=99.46 E-value=1.7e-12 Score=131.47 Aligned_cols=129 Identities=19% Similarity=0.258 Sum_probs=112.4
Q ss_pred CCceEEEEEEecCCHHHHHHHHhcCCCCcccccc----ccceeEEEEeecCc--------eEEEEEEeecCCCCCCCCCc
Q 006638 200 DHPAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDF----CFYRGCVVEHLDGH--------SDVVHKLLYSDWLPWGMQRR 267 (637)
Q Consensus 200 ~~~~~Ka~gvV~aspe~VfelL~D~~~~R~eWD~----~~~~~~vVE~ID~~--------tdIvY~~~~~~~~P~pvs~R 267 (637)
.+-+=|+.++|...|..|.++|+|.+ .|-. .+..+++++.|+.. ..++|..++... | .+.+|
T Consensus 58 ~~eASR~~glV~m~~~~lVe~lmD~~----kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pS-p-LVp~R 131 (229)
T cd08875 58 TTEASRACGLVMMNAIKLVEILMDVN----KWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPS-P-LVPTR 131 (229)
T ss_pred eEEEEeeeEEEecCHHHHHHHHhChh----hhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCc-c-cccCC
Confidence 34577899999999999999999954 5555 88889999988654 678888877432 3 68999
Q ss_pred eEEEEEEEEEcCCCeEEEEEeecCCC-CCCCCCCeEEEEEeeeeEEEEeCCCCCceEEEEEEEEeCCCc
Q 006638 268 DLLVRRYWRREDDGTYVILYHSVNHK-KCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYW 335 (637)
Q Consensus 268 DFV~lR~wrr~~DGsyvI~~~SV~Hp-~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~VTyi~qvDpkGw 335 (637)
||+++||.++.+||+++|+-.|+++. ..|+.++++|++..+|||+|+|..+| .|+|||+-|+|..-|
T Consensus 132 e~~fLRyc~~l~dG~w~VvdvSld~~~~~p~~~~~~r~~~~PSGcLIq~~~nG-~SkVtwVeH~e~d~~ 199 (229)
T cd08875 132 EFYFLRYCKQLEDGLWAVVDVSIDGVQTAPPPASFVRCRRLPSGCLIQDMPNG-YSKVTWVEHVEVDEK 199 (229)
T ss_pred eEEEEEEEEEeCCCeEEEEEEeecccccCCCCCCccEEEEecCcEEEEECCCC-ceEEEEEEEEeccCC
Confidence 99999999999999999999999987 68888999999999999999999777 799999999998887
No 31
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=99.38 E-value=6.3e-12 Score=126.30 Aligned_cols=131 Identities=12% Similarity=0.013 Sum_probs=97.7
Q ss_pred Cccccccccc--eeEEEEeecCce----EEEEEEeecCCCCCCCCCceEEEEEE-EEEcC-CCeEEEEEeecCCCCCC-C
Q 006638 227 SRSEWDFCFY--RGCVVEHLDGHS----DVVHKLLYSDWLPWGMQRRDLLVRRY-WRRED-DGTYVILYHSVNHKKCP-K 297 (637)
Q Consensus 227 ~R~eWD~~~~--~~~vVE~ID~~t----dIvY~~~~~~~~P~pvs~RDFV~lR~-wrr~~-DGsyvI~~~SV~Hp~~P-p 297 (637)
.-.+|.+.+. ++++|+..++.. .|+|..++ +|||+++||||.+.. ....+ ...++++..++.|+.+| +
T Consensus 64 ~E~~~i~~v~~~~~~~l~~~~~~~~~~~~v~~~~~~---~P~Pl~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~ 140 (208)
T cd08864 64 YEKEYVHEIGAYDLEPVEVDGEGDGVVTYLVQLTYK---FPFPLSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESL 140 (208)
T ss_pred hhhhchhhhccceeEEeeecCCCccceEEEEEEEEE---CCCCCCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCcc
Confidence 3569999999 899999988766 77887665 789999999999877 33333 14688899999999999 8
Q ss_pred CCCeEEEEEeee-eEEEEeCCCCCceEEEEEE--EEeCCCccccccccchhhHHHHHHHHHHHHHHHH
Q 006638 298 QKGYVRACLKSG-GFVITPSNQGKQSIVKHML--AVDWKYWKLYLRPSSARSITIRMLERVAALRELF 362 (637)
Q Consensus 298 ~~GyVRaei~~g-G~vI~Pl~~~~~~~VTyi~--qvDpkGwip~~~~~~~~~i~~~ml~~va~LRe~~ 362 (637)
.+|||||.-..+ .|.+.|.+....+.|+|++ +.||||+||.|+.+ ..+|..+..-+..+-+|+
T Consensus 141 ~~~~Vr~~y~SgE~~~~~p~~~~~~~~vew~maT~sDpGG~IP~wl~n--~~~p~aI~~Dv~~fl~W~ 206 (208)
T cd08864 141 YENAVLGRYASVEKISYLPDADGKSNKVEWIMATRSDAGGNIPRWLTK--LTIPKAIAKDVPLFLDWI 206 (208)
T ss_pred CCCcEEEEEEEEEEEEEcCccCCCcCCEEEEEEEeeCCCCcCcHHHHh--ccCchHHHHhHHHHHHHh
Confidence 999999995554 4555676412356788888 99999999999743 345555545555555554
No 32
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.88 E-value=1.5e-08 Score=86.92 Aligned_cols=91 Identities=29% Similarity=0.451 Sum_probs=67.0
Q ss_pred eeeEEEEEeecccccccccceeeEeecceeeeeecCCCCCCCccceeeeecCceEEecCCcceeeCceEEEEEEecCCCC
Q 006638 10 IEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNSLDH 89 (637)
Q Consensus 10 ~egW~~~~~~~~lg~~~~~~Ryfvl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~~~ 89 (637)
|||||...+.. + ..-+.|||||.+..|.|||...... ..|.....|..+...++.++ =++|.|..+.+
T Consensus 1 ~~G~L~k~~~~-~--~~W~~r~~vl~~~~L~~~~~~~~~~-~~~~~~i~l~~~~~~~~~~~-------~~~F~i~~~~~- 68 (91)
T cd01246 1 VEGWLLKWTNY-L--KGWQKRWFVLDNGLLSYYKNKSSMR-GKPRGTILLSGAVISEDDSD-------DKCFTIDTGGD- 68 (91)
T ss_pred CeEEEEEeccc-C--CCceeeEEEEECCEEEEEecCccCC-CCceEEEEeceEEEEECCCC-------CcEEEEEcCCC-
Confidence 79999997653 2 3459999999999999999655332 46666666666443333322 26777776433
Q ss_pred cceeeeccCCHHHHHHHHHHHHHH
Q 006638 90 NEKLKLGARSPEEAAKWIRSLQEA 113 (637)
Q Consensus 90 ~~~~~~~~~~~eea~~W~~~~~~a 113 (637)
+.+.|.|.|.+|+.+|+.||+.|
T Consensus 69 -~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 69 -KTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred -CEEEEECCCHHHHHHHHHHHHhC
Confidence 78889999999999999999876
No 33
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=98.80 E-value=5.5e-08 Score=81.86 Aligned_cols=100 Identities=26% Similarity=0.372 Sum_probs=77.9
Q ss_pred ceeeEEEEEeecccccccccceeeEeecceeeeeecCCCCCCCccceeeeecCceEEecCCcceeeCceEEEEEEecCCC
Q 006638 9 KIEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNSLD 88 (637)
Q Consensus 9 ~~egW~~~~~~~~lg~~~~~~Ryfvl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~~ 88 (637)
.++|||.+...+ +....+.||++|.++.+.+|+..+...+..|.....|++. +|........ ...-++|.|.++..
T Consensus 2 ~~~G~l~~~~~~--~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~-~~~~~~f~l~~~~~ 77 (102)
T smart00233 2 IKEGWLYKKSGG--KKKSWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGI-TVREAPDPDS-AKKPHCFEIKTADR 77 (102)
T ss_pred ceeEEEEEeCCC--ccCCceEEEEEEECCEEEEEeCCCccccCCCceEEECCcC-EEEeCCCCcc-CCCceEEEEEecCC
Confidence 389999997766 6677899999999999999998887654677788888886 6664333221 22336777776655
Q ss_pred CcceeeeccCCHHHHHHHHHHHHHHH
Q 006638 89 HNEKLKLGARSPEEAAKWIRSLQEAA 114 (637)
Q Consensus 89 ~~~~~~~~~~~~eea~~W~~~~~~a~ 114 (637)
..+.|.|.|.+|+..|+.+|+.++
T Consensus 78 --~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 78 --RSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred --ceEEEEcCCHHHHHHHHHHHHHhh
Confidence 788899999999999999999885
No 34
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=98.80 E-value=5.8e-08 Score=89.85 Aligned_cols=134 Identities=15% Similarity=0.076 Sum_probs=96.1
Q ss_pred EEEEEecCCHHHHHHHHhcCCCCccccccccceeEEEEeecCceEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeEE
Q 006638 205 MAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTYV 284 (637)
Q Consensus 205 Ka~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~DGsyv 284 (637)
+....|++|+++||++|.|.++ .++|.+.+.++++++.-+ +...++.... ++...|+|+....+. .+. .
T Consensus 2 ~~s~~i~ap~~~v~~~i~D~~~-~~~~~p~~~~~~vl~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~--~ 70 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVADVER-YPEFLPWCTASRVLERDE-DELEAELTVG-----FGGIRESFTSRVTLV--PPE--S 70 (138)
T ss_pred eEEEEcCCCHHHHHHHHHHHHh-hhhhcCCccccEEEEcCC-CEEEEEEEEe-----eccccEEEEEEEEec--CCC--E
Confidence 4567889999999999999996 999999999999999866 3345554432 235688888654443 233 2
Q ss_pred EEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCceEEEEEEEEeCCCcccccc-ccchhhHHHHHHHHHHHHHHHHH
Q 006638 285 ILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYLR-PSSARSITIRMLERVAALRELFQ 363 (637)
Q Consensus 285 I~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~VTyi~qvDpkGwip~~~-~~~~~~i~~~ml~~va~LRe~~~ 363 (637)
|...++.. +.....|.|.++|++++ +|+|+|.++.+++|.+|.|+ +.+....+.++ +.+|++.+.
T Consensus 71 i~~~~~~g----------~~~~~~g~w~~~p~~~~-~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~---l~~f~~~~~ 136 (138)
T cd07813 71 IEAELVDG----------PFKHLEGEWRFKPLGEN-ACKVEFDLEFEFKSRLLEALAGLVFDEVAKKM---VDAFEKRAK 136 (138)
T ss_pred EEEEecCC----------ChhhceeEEEEEECCCC-CEEEEEEEEEEECCHHHHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 45555533 22345689999999755 79999999999999999885 33445555544 566666554
No 35
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=98.73 E-value=6e-08 Score=83.28 Aligned_cols=100 Identities=28% Similarity=0.429 Sum_probs=73.4
Q ss_pred ceeeEEEEEeecccccccccceeeEeecceeeeeecCCCCCCCccceeeeecCceEEecCCcc--eeeCceEEEEEEecC
Q 006638 9 KIEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDNGRE--SINRKVLFVFTLYNS 86 (637)
Q Consensus 9 ~~egW~~~~~~~~lg~~~~~~Ryfvl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~--~~~~~~~~v~~~yn~ 86 (637)
.++|||+..+ .....+ +.|||||.+..|.|||.........|....-+++. .|.+.... ......-++|.|..+
T Consensus 2 ~~~G~L~~~~--~~~~~w-k~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~ 77 (104)
T PF00169_consen 2 IKEGWLLKKS--SSRKKW-KKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTP 77 (104)
T ss_dssp EEEEEEEEEE--SSSSSE-EEEEEEEETTEEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEET
T ss_pred EEEEEEEEEC--CCCCCe-EEEEEEEECCEEEEEecCccccceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeC
Confidence 5899999977 444444 99999999999999996664334677777777665 66642221 122334456666666
Q ss_pred CCCcceeeeccCCHHHHHHHHHHHHHHH
Q 006638 87 LDHNEKLKLGARSPEEAAKWIRSLQEAA 114 (637)
Q Consensus 87 ~~~~~~~~~~~~~~eea~~W~~~~~~a~ 114 (637)
.. ..+.|.|.|.++..+|+.+|+.|+
T Consensus 78 ~~--~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 78 NG--KSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp TS--EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CC--cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 65 788899999999999999999985
No 36
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=98.70 E-value=7.9e-08 Score=86.28 Aligned_cols=99 Identities=18% Similarity=0.232 Sum_probs=66.4
Q ss_pred eeeEEEEEeecccccccccceeeEeecceeeeeecCCCC--CCCccceeeeecCceEEecCCcceeeCceEEEEEEecCC
Q 006638 10 IEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSS--EKEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNSL 87 (637)
Q Consensus 10 ~egW~~~~~~~~lg~~~~~~Ryfvl~~~~~~~yKr~P~~--~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~ 87 (637)
.||||..-|... ...+ ++|||||.+..|.|||..... .|.+++.+. ..++.|.+.-.....+...|.|.|..+
T Consensus 1 KeG~L~K~g~~~-~k~w-kkRwFvL~~~~L~Yyk~~~d~~~~G~I~L~~~--~~~~~v~~~~~~~~~~~~~~~F~i~t~- 75 (103)
T cd01251 1 KEGFMEKTGPKH-TEGF-KKRWFTLDDRRLMYFKDPLDAFAKGEVFLGSQ--EDGYEVREGLPPGTQGNHWYGVTLVTP- 75 (103)
T ss_pred CceeEEecCCCC-CCCc-eeEEEEEeCCEEEEECCCCCcCcCcEEEeecc--ccceeEeccCCccccccccceEEEEeC-
Confidence 489999866542 2344 999999999999999953322 233333331 123445421000011223468888775
Q ss_pred CCcceeeeccCCHHHHHHHHHHHHHHHh
Q 006638 88 DHNEKLKLGARSPEEAAKWIRSLQEAAV 115 (637)
Q Consensus 88 ~~~~~~~~~~~~~eea~~W~~~~~~a~~ 115 (637)
.+++.|.|.|.+|+..||+||+.|+.
T Consensus 76 --~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 76 --ERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred --CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 78999999999999999999999976
No 37
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.68 E-value=1.1e-06 Score=81.49 Aligned_cols=142 Identities=12% Similarity=0.112 Sum_probs=85.6
Q ss_pred EEEEEecCCHHHHHHHHhcCCCCccccccccceeEEEEeecCceEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeEE
Q 006638 205 MAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTYV 284 (637)
Q Consensus 205 Ka~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~DGsyv 284 (637)
+++..|++||++|+++|.|.+. .++|.+.+.++++++.-++. ..+|.......+.+.. +.-|.+.. ...++....
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~-~~~w~p~v~~~~~l~~~~~~-~~~~~~~~~~~~~~~~--~~~v~~~~-~~~~~~~~~ 76 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDN-LAEFIPNLAESRLLERNGNR-VVLEQTGKQGILFFKF--EARVVLEL-REREEFPRE 76 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhh-HHhhCcCceEEEEEEcCCCE-EEEEEeeeEEEEeeee--eEEEEEEE-EEecCCCce
Confidence 6788999999999999999996 89999999999999874433 3344321100000000 01111111 111110111
Q ss_pred EEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCceEEEEEEEEeCCCccccccccchhhHHHHHHHHHHHHHHHHH
Q 006638 285 ILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYLRPSSARSITIRMLERVAALRELFQ 363 (637)
Q Consensus 285 I~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~VTyi~qvDpkGwip~~~~~~~~~i~~~ml~~va~LRe~~~ 363 (637)
+.++.+.. -+ ....+.|.++|.+++.+|+|+|.++++|++.+|.++.+ ..+-..+...+++||+.++
T Consensus 77 i~~~~~~g--------~~--~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~~p~~l~~--~~~~~~~~~~l~~lr~~ae 143 (144)
T cd08866 77 LDFEMVEG--------DF--KRFEGSWRLEPLADGGGTLLTYEVEVKPDFFAPVFLVE--FVLRQDLPTNLLAIRAEAE 143 (144)
T ss_pred EEEEEcCC--------ch--hceEEEEEEEECCCCCeEEEEEEEEEEeCCCCCHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 22222211 01 34468999999976337999999999999999987532 1222234456888888764
No 38
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=98.56 E-value=4.4e-07 Score=79.66 Aligned_cols=93 Identities=17% Similarity=0.418 Sum_probs=64.5
Q ss_pred eeeEEEEEeec-c-cccccccceeeEeecceeeeeecCCCCCCCccceeeeecCceEEecCCcceeeCceEEEEEEecCC
Q 006638 10 IEGWLYAILVN-R-IGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNSL 87 (637)
Q Consensus 10 ~egW~~~~~~~-~-lg~~~~~~Ryfvl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~ 87 (637)
++|||++-+.. + ....+ ++|||||.++.|.|||..... .|.....++++ .|+.. .+. ..-|+|.|-++.
T Consensus 2 ~~GwL~kk~~~~g~~~k~W-kkrwfvL~~~~L~yyk~~~~~---~~~~~I~L~~~-~v~~~-~~~---~k~~~F~I~~~~ 72 (96)
T cd01260 2 CDGWLWKRKKPGGFMGQKW-ARRWFVLKGTTLYWYRSKQDE---KAEGLIFLSGF-TIESA-KEV---KKKYAFKVCHPV 72 (96)
T ss_pred ceeEEEEecCCCCccccCc-eeEEEEEECCEEEEECCCCCC---ccceEEEccCC-EEEEc-hhc---CCceEEEECCCC
Confidence 79999995422 2 33466 999999999999999955432 45444445553 44421 011 134678886443
Q ss_pred CCcceeeeccCCHHHHHHHHHHHHHH
Q 006638 88 DHNEKLKLGARSPEEAAKWIRSLQEA 113 (637)
Q Consensus 88 ~~~~~~~~~~~~~eea~~W~~~~~~a 113 (637)
.+.+-|.|.|.||+.+||++|+.|
T Consensus 73 --~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 73 --YKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred --CcEEEEEeCCHHHHHHHHHHHHhC
Confidence 377889999999999999999876
No 39
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=98.52 E-value=2.6e-07 Score=83.35 Aligned_cols=96 Identities=17% Similarity=0.194 Sum_probs=66.5
Q ss_pred eeeEEEEEe--ecccccccccceeeEeecceeeeeecCCCC----CCCccceeeeecCceEEecCCccee---eCceEEE
Q 006638 10 IEGWLYAIL--VNRIGMQISRKRYFILLDNCLNGYKMVPSS----EKEEPVKSAMIHSCIRVTDNGRESI---NRKVLFV 80 (637)
Q Consensus 10 ~egW~~~~~--~~~lg~~~~~~Ryfvl~~~~~~~yKr~P~~----~~~~pi~~~ii~~~~rVed~Gr~~~---~~~~~~v 80 (637)
-||||+.-+ ..++|+.--+.|||||.+..|.|||..+.. .|.+||.+ ..-|+...-+.. +...-|.
T Consensus 2 k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~~~~kG~I~L~~-----~~~ve~~~~~~~~~~~~~~~~~ 76 (106)
T cd01238 2 LESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEKRGSKKGSIDLSK-----IKCVETVKPEKNPPIPERFKYP 76 (106)
T ss_pred cceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCcccccCcceeEECCc-----ceEEEEecCCcCcccccccCcc
Confidence 489999975 566888677999999999999999976542 23445444 334442111111 1122367
Q ss_pred EEEecCCCCcceeeeccCCHHHHHHHHHHHHHH
Q 006638 81 FTLYNSLDHNEKLKLGARSPEEAAKWIRSLQEA 113 (637)
Q Consensus 81 ~~~yn~~~~~~~~~~~~~~~eea~~W~~~~~~a 113 (637)
|.|.-. .+++-|.|.|.+|...||+||+++
T Consensus 77 F~i~t~---~r~~yl~A~s~~er~~WI~ai~~~ 106 (106)
T cd01238 77 FQVVHD---EGTLYVFAPTEELRKRWIKALKQV 106 (106)
T ss_pred EEEEeC---CCeEEEEcCCHHHHHHHHHHHHhC
Confidence 888663 457778899999999999999863
No 40
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=98.47 E-value=1.1e-06 Score=78.39 Aligned_cols=95 Identities=14% Similarity=0.185 Sum_probs=68.7
Q ss_pred eeeEEEEEeecccccccccceeeEeecceeeeeecCCCCCCCccceeeeecCceEEe-cCCcceeeCceEEEEEEecCCC
Q 006638 10 IEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVT-DNGRESINRKVLFVFTLYNSLD 88 (637)
Q Consensus 10 ~egW~~~~~~~~lg~~~~~~Ryfvl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVe-d~Gr~~~~~~~~~v~~~yn~~~ 88 (637)
.+|||..-|.+. ..+ ++|||||++..|.|||.... ..|+...-++ +|.|+ +.+.....++. ++|.|..
T Consensus 4 k~G~L~Kkg~~~--k~W-kkRwfvL~~~~L~yyk~~~~---~~~~~~I~L~-~~~v~~~~~~~~~~~~~-~~F~I~t--- 72 (100)
T cd01233 4 KKGYLNFPEETN--SGW-TRRFVVVRRPYLHIYRSDKD---PVERGVINLS-TARVEHSEDQAAMVKGP-NTFAVCT--- 72 (100)
T ss_pred eeEEEEeeCCCC--CCc-EEEEEEEECCEEEEEccCCC---ccEeeEEEec-ccEEEEccchhhhcCCC-cEEEEEC---
Confidence 689999976643 455 99999999999999997543 3566666666 66665 23332222222 4677754
Q ss_pred CcceeeeccCCHHHHHHHHHHHHHHHh
Q 006638 89 HNEKLKLGARSPEEAAKWIRSLQEAAV 115 (637)
Q Consensus 89 ~~~~~~~~~~~~eea~~W~~~~~~a~~ 115 (637)
.++++.|.|.|.+|...||.+|+..++
T Consensus 73 ~~rt~~~~A~s~~e~~~Wi~ai~~~~~ 99 (100)
T cd01233 73 KHRGYLFQALSDKEMIDWLYALNPLYA 99 (100)
T ss_pred CCCEEEEEcCCHHHHHHHHHHhhhhhc
Confidence 468899999999999999999987654
No 41
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=98.39 E-value=2.3e-06 Score=75.38 Aligned_cols=95 Identities=19% Similarity=0.233 Sum_probs=63.4
Q ss_pred eeeEEEEEeecccccccccceeeEeec--ceeeeeecCCCCCCCccceeeeecCceEEec----CCcceeeCceEEEEEE
Q 006638 10 IEGWLYAILVNRIGMQISRKRYFILLD--NCLNGYKMVPSSEKEEPVKSAMIHSCIRVTD----NGRESINRKVLFVFTL 83 (637)
Q Consensus 10 ~egW~~~~~~~~lg~~~~~~Ryfvl~~--~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed----~Gr~~~~~~~~~v~~~ 83 (637)
++|||..-|. .-..+ ..|||||.+ ..|.|||... + ..|.-..-+...+.|+. .|...+.... +.|.+
T Consensus 1 ~~G~L~K~g~--~~k~W-kkRwFvL~~~~~~L~Yy~~~~-~--~~~~g~I~L~~~~~v~~~~~~~~~~~~~~~~-~~f~i 73 (101)
T cd01235 1 CEGYLYKRGA--LLKGW-KPRWFVLDPDKHQLRYYDDFE-D--TAEKGCIDLAEVKSVNLAQPGMGAPKHTSRK-GFFDL 73 (101)
T ss_pred CeEEEEEcCC--CCCCc-cceEEEEECCCCEEEEecCCC-C--CccceEEEcceeEEEeecCCCCCCCCCCCCc-eEEEE
Confidence 4899999664 44566 999999995 4899999443 2 34433333345555553 1222222222 44665
Q ss_pred ecCCCCcceeeeccCCHHHHHHHHHHHHHHH
Q 006638 84 YNSLDHNEKLKLGARSPEEAAKWIRSLQEAA 114 (637)
Q Consensus 84 yn~~~~~~~~~~~~~~~eea~~W~~~~~~a~ 114 (637)
.. ..+.+-|.|.|.+|+..|++||+.+|
T Consensus 74 ~t---~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 74 KT---SKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred Ee---CCceEEEECCCHHHHHHHHHHHHhhC
Confidence 42 45778899999999999999999875
No 42
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=98.39 E-value=6.3e-07 Score=81.74 Aligned_cols=95 Identities=31% Similarity=0.496 Sum_probs=56.5
Q ss_pred eeeEEEEEeecccccccccceeeEee-cceeeeeecCCCCCC---------CccceeeeecCceE---Eec----CCcce
Q 006638 10 IEGWLYAILVNRIGMQISRKRYFILL-DNCLNGYKMVPSSEK---------EEPVKSAMIHSCIR---VTD----NGRES 72 (637)
Q Consensus 10 ~egW~~~~~~~~lg~~~~~~Ryfvl~-~~~~~~yKr~P~~~~---------~~pi~~~ii~~~~r---Ved----~Gr~~ 72 (637)
+|||||.-+. ++|..| +.|||||+ +..|.|||- |.+.. ..-++++-++...+ +.. +-++.
T Consensus 1 k~G~l~K~~~-~~~kgW-k~RwFiL~k~~~L~YyK~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (112)
T PF15413_consen 1 KEGYLYKWGN-KFGKGW-KKRWFILRKDGVLSYYKI-PRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGE 77 (112)
T ss_dssp EEEEEEE--T-TS-S---EEEEEEEE-TTEEEEESS--------------TT-SB-SEEEE---GGGT-EEEES-T--SS
T ss_pred CCceEEEecC-CCCcCc-cccEEEEEeCCEEEEeec-ccccccccccccchhceEeecccCcccccccccccccCCcccC
Confidence 6899998554 489999 99999999 999999996 22210 11222222222111 111 34556
Q ss_pred eeCceEEEEEEecCCCCcceeeeccCCHHHHHHHHHHHHHH
Q 006638 73 INRKVLFVFTLYNSLDHNEKLKLGARSPEEAAKWIRSLQEA 113 (637)
Q Consensus 73 ~~~~~~~v~~~yn~~~~~~~~~~~~~~~eea~~W~~~~~~a 113 (637)
+|...++| ...++++.|.|.|.+|-..|++||++|
T Consensus 78 ~~~~~~~i------~T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 78 IHLKVFSI------FTPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp -SSEEEEE------E-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred cCCCCcEE------ECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 67777777 345889999999999999999999986
No 43
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.38 E-value=2.3e-06 Score=73.69 Aligned_cols=94 Identities=24% Similarity=0.384 Sum_probs=62.7
Q ss_pred eeeEEEEEeecccccccccceeeEeecceeeeeecCCCCCCCccceeeeecCceEEecCCcceeeCceEEEEEEecCCCC
Q 006638 10 IEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNSLDH 89 (637)
Q Consensus 10 ~egW~~~~~~~~lg~~~~~~Ryfvl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~~~ 89 (637)
|+|||..=+ +-+...-++|||||.+..|.||+..+.. ...|.....+. .|.|+...... +.-++|.|..+.
T Consensus 1 k~G~L~kk~--~~~~~~W~kr~~~L~~~~l~~y~~~~~~-~~~~~~~i~l~-~~~v~~~~~~~---~~~~~f~i~~~~-- 71 (94)
T cd01250 1 KQGYLYKRS--SKSNKEWKKRWFVLKNGQLTYHHRLKDY-DNAHVKEIDLR-RCTVRHNGKQP---DRRFCFEVISPT-- 71 (94)
T ss_pred CcceEEEEC--CCcCCCceEEEEEEeCCeEEEEcCCccc-ccccceEEecc-ceEEecCcccc---CCceEEEEEcCC--
Confidence 689999833 2223345999999999999999976643 12333332232 34454222111 123688887654
Q ss_pred cceeeeccCCHHHHHHHHHHHHHH
Q 006638 90 NEKLKLGARSPEEAAKWIRSLQEA 113 (637)
Q Consensus 90 ~~~~~~~~~~~eea~~W~~~~~~a 113 (637)
+.+.|.|.|.+|+.+|+.||+++
T Consensus 72 -~~~~f~a~s~~~~~~Wi~al~~~ 94 (94)
T cd01250 72 -KTWHFQADSEEERDDWISAIQES 94 (94)
T ss_pred -cEEEEECCCHHHHHHHHHHHhcC
Confidence 77889999999999999999864
No 44
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=98.38 E-value=2.8e-06 Score=74.69 Aligned_cols=86 Identities=21% Similarity=0.219 Sum_probs=59.3
Q ss_pred eeeEEEEEeecccccccccceeeEeecceeeeeecCCCCC----CCccceeeeecCceEEecCCcceeeCceEEEEEEec
Q 006638 10 IEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSE----KEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYN 85 (637)
Q Consensus 10 ~egW~~~~~~~~lg~~~~~~Ryfvl~~~~~~~yKr~P~~~----~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn 85 (637)
++|||..-|. +-..+ +.|||||++..|.|||.++... |.++++.+.|. .+... . ..|.|..
T Consensus 1 ~~G~L~K~~~--~~k~W-k~RwFvL~~g~L~Yyk~~~~~~~~~~G~I~L~~~~i~-----~~~~~-----~--~~F~i~~ 65 (91)
T cd01247 1 TNGVLSKWTN--YINGW-QDRYFVLKEGNLSYYKSEAEKSHGCRGSIFLKKAIIA-----AHEFD-----E--NRFDISV 65 (91)
T ss_pred CceEEEEecc--ccCCC-ceEEEEEECCEEEEEecCccCcCCCcEEEECcccEEE-----cCCCC-----C--CEEEEEe
Confidence 5899999663 44566 9999999999999999766532 34444443322 11111 1 2444432
Q ss_pred CCCCcceeeeccCCHHHHHHHHHHHHH
Q 006638 86 SLDHNEKLKLGARSPEEAAKWIRSLQE 112 (637)
Q Consensus 86 ~~~~~~~~~~~~~~~eea~~W~~~~~~ 112 (637)
...+++.|.|.|++|...|++||+.
T Consensus 66 --~~~r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 66 --NENVVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred --CCCeEEEEEeCCHHHHHHHHHHHhh
Confidence 2248889999999999999999975
No 45
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=98.36 E-value=2.8e-06 Score=76.38 Aligned_cols=90 Identities=21% Similarity=0.425 Sum_probs=68.9
Q ss_pred ceeeEEEEEeecccccccccceeeEeecc------eeeeeecCCCCC--CCccceeeeecCceEEecCCcceeeCceEEE
Q 006638 9 KIEGWLYAILVNRIGMQISRKRYFILLDN------CLNGYKMVPSSE--KEEPVKSAMIHSCIRVTDNGRESINRKVLFV 80 (637)
Q Consensus 9 ~~egW~~~~~~~~lg~~~~~~Ryfvl~~~------~~~~yKr~P~~~--~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v 80 (637)
+++|||... ..-++|||||++. .|.|||....-. +..|.+..-++++.-|...-..+ ++ |+
T Consensus 3 ~k~GyL~K~-------K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d~k--~~--~~ 71 (101)
T cd01257 3 RKSGYLRKQ-------KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRADAK--HR--HL 71 (101)
T ss_pred cEEEEEeEe-------cCcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccccc--cC--eE
Confidence 489999984 4558899999998 799999665432 25788888888888887432221 22 68
Q ss_pred EEEecCCCCcceeeeccCCHHHHHHHHHHHHH
Q 006638 81 FTLYNSLDHNEKLKLGARSPEEAAKWIRSLQE 112 (637)
Q Consensus 81 ~~~yn~~~~~~~~~~~~~~~eea~~W~~~~~~ 112 (637)
|.|+.+ .+.+-|+|.|.+|...|+.+|.+
T Consensus 72 f~i~t~---dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 72 IALYTR---DEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEEEeC---CceEEEEeCCHHHHHHHHHHHhh
Confidence 888773 46888999999999999999865
No 46
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.35 E-value=1.6e-05 Score=72.51 Aligned_cols=135 Identities=13% Similarity=0.185 Sum_probs=86.7
Q ss_pred eEEEEEEecCCHHHHHHHHhcCCCCccccccccceeEEEEeecCce-EEEEEEeecCCCCCCCCCceEEEEEEEEEcCCC
Q 006638 203 AIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHS-DVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDG 281 (637)
Q Consensus 203 ~~Ka~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~~t-dIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~DG 281 (637)
.+.....|++||++||++|.|.++ .++|.+.+.++++++.-++.. ...+.... ..++.. +|+.- ....+..
T Consensus 3 ~v~~s~~i~ap~e~V~~~l~D~~~-~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~--~~~~~~~ 74 (140)
T cd07819 3 KVSREFEIEAPPAAVMDVLADVEA-YPEWSPKVKSVEVLLRDNDGRPEMVRIGVG----AYGIKD-TYALE--YTWDGAG 74 (140)
T ss_pred eEEEEEEEeCCHHHHHHHHhChhh-hhhhCcceEEEEEeccCCCCCEEEEEEEEe----eeeEEE-EEEEE--EEEcCCC
Confidence 356678899999999999999996 999999999999986544322 23443222 112222 44422 1222222
Q ss_pred eEEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCceEEEEEEEEeCCCccccccccch-hhHHHHHHHHHHHHHH
Q 006638 282 TYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYLRPSSA-RSITIRMLERVAALRE 360 (637)
Q Consensus 282 syvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~VTyi~qvDpkGwip~~~~~~~-~~i~~~ml~~va~LRe 360 (637)
.|.++.+... +.....+.|.++|.++ .|+|+|.++.+++|.+|.++.+.. +.+ ..+.+.+||+
T Consensus 75 --~i~~~~~~~~---------~~~~~~~~~~~~~~~~--~t~vt~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~ 138 (140)
T cd07819 75 --SVSWTLVEGE---------GNRSQEGSYTLTPKGD--GTRVTFDLTVELTVPLPGFLKRKAEPLV---LDEALKGLKK 138 (140)
T ss_pred --cEEEEEeccc---------ceeEEEEEEEEEECCC--CEEEEEEEEEEecCCCCHHHHHHhhhHH---HHHHHHhHhh
Confidence 2444444321 2334457899999976 499999999999999998853322 333 3455777776
Q ss_pred H
Q 006638 361 L 361 (637)
Q Consensus 361 ~ 361 (637)
+
T Consensus 139 ~ 139 (140)
T cd07819 139 R 139 (140)
T ss_pred h
Confidence 5
No 47
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=98.35 E-value=3.1e-06 Score=71.08 Aligned_cols=98 Identities=26% Similarity=0.332 Sum_probs=70.2
Q ss_pred eeeEEEEEeeccc-ccccccceeeEeecceeeeeecCCCCCCCccceeeeecCceEEecCCcceeeCceEEEEEEecCCC
Q 006638 10 IEGWLYAILVNRI-GMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNSLD 88 (637)
Q Consensus 10 ~egW~~~~~~~~l-g~~~~~~Ryfvl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~~ 88 (637)
.+|||...+...+ +....++|||+|.++.|.+|+.++...... ....+. +++|+...... +.-++|.|.+...
T Consensus 1 ~~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~~~--~~~~l~-~~~v~~~~~~~---~~~~~F~i~~~~~ 74 (99)
T cd00900 1 KEGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEIKP--GSIPLS-EISVEEDPDGS---DDPNCFAIVTKDR 74 (99)
T ss_pred CccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcCCC--CEEEcc-ceEEEECCCCC---CCCceEEEECCCC
Confidence 3799999887765 667779999999999999999776553221 112222 23355432221 2346888888865
Q ss_pred CcceeeeccCCHHHHHHHHHHHHHH
Q 006638 89 HNEKLKLGARSPEEAAKWIRSLQEA 113 (637)
Q Consensus 89 ~~~~~~~~~~~~eea~~W~~~~~~a 113 (637)
....+.|.|.|.+|+..|+++|++|
T Consensus 75 ~~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 75 GRRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred CcEEEEEEcCCHHHHHHHHHHHhcC
Confidence 5788889999999999999999875
No 48
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.34 E-value=4e-06 Score=77.51 Aligned_cols=95 Identities=26% Similarity=0.532 Sum_probs=66.2
Q ss_pred eeeEEEEEeecccccccccceeeEeecceeeeeecCCCCCCCccceeeeecCceEEecCCcceeeCceEEEEEEecCCC-
Q 006638 10 IEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNSLD- 88 (637)
Q Consensus 10 ~egW~~~~~~~~lg~~~~~~Ryfvl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~~- 88 (637)
.+|||..-|.. + ..+ ++|||||.++.|.|||. +.+ ..|.....+. +|.|+..-. .++ =++|.|+.+.+
T Consensus 2 k~G~L~K~~~~-~-~~W-kkRwfvL~~~~L~yyk~-~~~--~~~~g~I~L~-~~~v~~~~~---~~~-~~~F~i~~~~~~ 70 (125)
T cd01252 2 REGWLLKQGGR-V-KTW-KRRWFILTDNCLYYFEY-TTD--KEPRGIIPLE-NVSIREVED---PSK-PFCFELFSPSDK 70 (125)
T ss_pred cEEEEEEeCCC-C-CCe-EeEEEEEECCEEEEEcC-CCC--CCceEEEECC-CcEEEEccc---CCC-CeeEEEECCccc
Confidence 58999986643 2 445 99999999999999984 222 3555555555 445553211 112 25777777665
Q ss_pred -----------------CcceeeeccCCHHHHHHHHHHHHHHHh
Q 006638 89 -----------------HNEKLKLGARSPEEAAKWIRSLQEAAV 115 (637)
Q Consensus 89 -----------------~~~~~~~~~~~~eea~~W~~~~~~a~~ 115 (637)
....+.|.|.|.+|+..|+.||+.++.
T Consensus 71 ~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~ 114 (125)
T cd01252 71 QQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASIS 114 (125)
T ss_pred cccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence 224556999999999999999999987
No 49
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.34 E-value=2.9e-06 Score=75.03 Aligned_cols=91 Identities=25% Similarity=0.302 Sum_probs=63.4
Q ss_pred eeeEEEEEeecccccccccceeeEeec--ceeeeeecCCCCCCCccceeeeecCceEEecCCcceeeCceEEEEEEecCC
Q 006638 10 IEGWLYAILVNRIGMQISRKRYFILLD--NCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNSL 87 (637)
Q Consensus 10 ~egW~~~~~~~~lg~~~~~~Ryfvl~~--~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~ 87 (637)
+.|||...|...+...+ ++|||||++ ..|.|||... + ..|+-..-+.+.+-+.+...+ . +.|.|..
T Consensus 1 l~GyL~K~g~~~~~K~W-kkRWFvL~~~~~~L~Yyk~~~-d--~~p~G~I~L~~~~~~~~~~~~---~---~~F~i~t-- 68 (95)
T cd01265 1 LCGYLHKIEGKGPLRGR-RSRWFALDDRTCYLYYYKDSQ-D--AKPLGRVDLSGAAFTYDPREE---K---GRFEIHS-- 68 (95)
T ss_pred CcccEEEecCCCCCcCc-eeEEEEEcCCCcEEEEECCCC-c--ccccceEECCccEEEcCCCCC---C---CEEEEEc--
Confidence 36999999876666777 999999984 4799998433 2 245444444443333322211 1 2566654
Q ss_pred CCcceeeeccCCHHHHHHHHHHHHHH
Q 006638 88 DHNEKLKLGARSPEEAAKWIRSLQEA 113 (637)
Q Consensus 88 ~~~~~~~~~~~~~eea~~W~~~~~~a 113 (637)
.++.+.|.|.|++|..+||++|+.+
T Consensus 69 -~~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 69 -NNEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred -CCcEEEEECCCHHHHHHHHHHHHhh
Confidence 3578899999999999999999987
No 50
>PF11274 DUF3074: Protein of unknown function (DUF3074)
Probab=98.31 E-value=1.9e-05 Score=78.27 Aligned_cols=140 Identities=16% Similarity=0.114 Sum_probs=94.3
Q ss_pred cCCHHHHHHHHhcC-CCCccccccccceeEEEEee----------cCceEEEEEEeecCCCCCCCCCceEEEEEEEEEcC
Q 006638 211 DGTSEAIFQTLMSL-GSSRSEWDFCFYRGCVVEHL----------DGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRRED 279 (637)
Q Consensus 211 ~aspe~VfelL~D~-~~~R~eWD~~~~~~~vVE~I----------D~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~ 279 (637)
.++-+++...|.+- ..+-.++.+.+...+.|+.+ +....|++..++ +|+|+++|||+.|-......
T Consensus 13 ~~~~~~~~~~L~~~h~e~E~~yi~~i~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~k---fp~pl~~R~F~~Lvit~~~~ 89 (184)
T PF11274_consen 13 GASFDEFRKGLKDEHSENEKEYIPGIGSVERLERWDVDDGGGGWGDGTMEVWQLSYK---FPGPLSPRVFVVLVITADLP 89 (184)
T ss_pred CCCHHHHHHHHHhhhHHHHHHhccccceEEEEEEeccccCCcccccceEEEEEEEeE---CCCCCCCcEEEEEEEEeccC
Confidence 56777777777653 22356788999999999998 344444444333 68899999999987654433
Q ss_pred ---------CCeEEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeC--C--CCCceEEEEEEEE--eCCCccccccccch
Q 006638 280 ---------DGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPS--N--QGKQSIVKHMLAV--DWKYWKLYLRPSSA 344 (637)
Q Consensus 280 ---------DGsyvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl--~--~~~~~~VTyi~qv--DpkGwip~~~~~~~ 344 (637)
..+++|+...+.|+.+|+.+|+|||.=.+ ==.|+.+ . +...-.|.|++-+ |+||++|.|+..
T Consensus 90 ~~~~~~~~~~~~f~vVs~P~~~~~~~~~~~~V~g~Y~S-VE~ire~p~~~~~~~~~~veW~MaT~SdaGG~IP~w~q~-- 166 (184)
T PF11274_consen 90 SKTEDDSTGPREFMVVSIPVDHPDSPPRKGYVRGQYES-VERIRELPDTKDDDEEGPVEWIMATRSDAGGSIPRWMQE-- 166 (184)
T ss_pred ccccCCCCCCCeEEEEEEEcCCcccCCCCCCEEEEEEE-EEEEEEccCCCCCCCCCcEEEEEEEeeCCCCcccHHHHh--
Confidence 24699999999999999999999987654 2223333 1 1123456666555 999999999732
Q ss_pred hhHHHHHHHHHH
Q 006638 345 RSITIRMLERVA 356 (637)
Q Consensus 345 ~~i~~~ml~~va 356 (637)
..+|..+..-+.
T Consensus 167 ~~~p~~Ia~DV~ 178 (184)
T PF11274_consen 167 MGTPGAIAKDVP 178 (184)
T ss_pred ccCcHHHHHHHH
Confidence 345544433333
No 51
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=98.17 E-value=9.4e-06 Score=73.27 Aligned_cols=96 Identities=25% Similarity=0.276 Sum_probs=64.8
Q ss_pred eeEEEEEeecc-cccccccceeeEeecce-------eeeeecCCCCCCCccceeeeecCceEEecCCcce--eeCceEEE
Q 006638 11 EGWLYAILVNR-IGMQISRKRYFILLDNC-------LNGYKMVPSSEKEEPVKSAMIHSCIRVTDNGRES--INRKVLFV 80 (637)
Q Consensus 11 egW~~~~~~~~-lg~~~~~~Ryfvl~~~~-------~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~--~~~~~~~v 80 (637)
||||..-|... +++.-=++|||||.+.. |.|||..+. ..|....-+++...| +.|... .+...=|+
T Consensus 2 eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~---~k~~g~I~L~~~~~v-~~~~~~~~~~~~~~~~ 77 (108)
T cd01266 2 EGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRK---FKLEFVIDLESCSQV-DPGLLCTAGNCIFGYG 77 (108)
T ss_pred ceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCC---CccceEEECCccEEE-cccccccccCcccceE
Confidence 89999965533 35544499999999876 599995443 356555556664444 333211 11222367
Q ss_pred EEEecCCCCcceeeeccCCHHHHHHHHHHHHHH
Q 006638 81 FTLYNSLDHNEKLKLGARSPEEAAKWIRSLQEA 113 (637)
Q Consensus 81 ~~~yn~~~~~~~~~~~~~~~eea~~W~~~~~~a 113 (637)
|.|.- ..+.+-|.|.|.+|...||.+|.+.
T Consensus 78 f~i~t---~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 78 FDIET---IVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred EEEEe---CCccEEEEECCHHHHHHHHHHHHhh
Confidence 77772 4678889999999999999999764
No 52
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.15 E-value=2.3e-05 Score=70.04 Aligned_cols=97 Identities=20% Similarity=0.218 Sum_probs=66.5
Q ss_pred ceeeEEEEEeecccccccccceeeEeecceeeeeecCCCCCCCccceeeee-cCceEEecCCcceeeCceEEEEEEecCC
Q 006638 9 KIEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMI-HSCIRVTDNGRESINRKVLFVFTLYNSL 87 (637)
Q Consensus 9 ~~egW~~~~~~~~lg~~~~~~Ryfvl~~~~~~~yKr~P~~~~~~pi~~~ii-~~~~rVed~Gr~~~~~~~~~v~~~yn~~ 87 (637)
.+||||-.+++.. .-++.|||+|-+..|=|+|.+|...+..-...+.| =.++.|++.- ....-+.|.|.-+
T Consensus 3 ikeG~L~K~~~~~---~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~~----~~~~~~~F~I~~~- 74 (101)
T cd01219 3 LKEGSVLKISSTT---EKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEGD----NLERPHSFLVSGK- 74 (101)
T ss_pred ccceEEEEEecCC---CCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeCC----CCCcCceEEEecC-
Confidence 3799998876543 34678999998889999996554433222223333 2357777531 1222344666333
Q ss_pred CCcceeeeccCCHHHHHHHHHHHHHHHh
Q 006638 88 DHNEKLKLGARSPEEAAKWIRSLQEAAV 115 (637)
Q Consensus 88 ~~~~~~~~~~~~~eea~~W~~~~~~a~~ 115 (637)
.+.+.+.|.|++|-..||.||+.||+
T Consensus 75 --~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 75 --QRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred --CcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 38899999999999999999999987
No 53
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.14 E-value=5.3e-05 Score=69.46 Aligned_cols=140 Identities=6% Similarity=-0.125 Sum_probs=84.5
Q ss_pred EEEEEEecCCHHHHHHHHhcCCCCccccccccceeEEEEeecCceEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeE
Q 006638 204 IMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTY 283 (637)
Q Consensus 204 ~Ka~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~DGsy 283 (637)
++++..+++||++||++|.|.++ ..+|.+.+.+.+++ +++...++.+... ++.+.|.-...+.....+...|
T Consensus 3 ~~~~~~i~a~~e~v~~~l~D~~~-~~~w~p~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 74 (144)
T cd05018 3 ISGEFRIPAPPEEVWAALNDPEV-LARCIPGCESLEKI---GPNEYEATVKLKV----GPVKGTFKGKVELSDLDPPESY 74 (144)
T ss_pred eeeEEEecCCHHHHHHHhcCHHH-HHhhccchhhcccc---CCCeEEEEEEEEE----ccEEEEEEEEEEEEecCCCcEE
Confidence 66788899999999999999996 89999998876554 4444444443331 3444443322333222233444
Q ss_pred EEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCceEEEEEEEEeCCCccccccccchhhHHHH-HHHHHHHHHHHH
Q 006638 284 VILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYLRPSSARSITIR-MLERVAALRELF 362 (637)
Q Consensus 284 vI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~VTyi~qvDpkGwip~~~~~~~~~i~~~-ml~~va~LRe~~ 362 (637)
.+....... .+.....+.|.++|.++ .|+|+|-.+++++|.+......+......+ +-..+.+||+.+
T Consensus 75 ~~~~~~~~~---------~~~~~~~~~~~l~~~~~--gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~ 143 (144)
T cd05018 75 TITGEGKGG---------AGFVKGTARVTLEPDGG--GTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASKI 143 (144)
T ss_pred EEEEEEcCC---------CceEEEEEEEEEEecCC--cEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444322111 12234567899999843 599999999999997632222222222222 235566676654
No 54
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.14 E-value=9.6e-06 Score=72.50 Aligned_cols=85 Identities=19% Similarity=0.273 Sum_probs=59.9
Q ss_pred ecccccccccceeeEeecceeeeeecCCCCCCCccceeeeecCceEEecCCcceeeCceEEEEEEecCCCCcceeeeccC
Q 006638 19 VNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNSLDHNEKLKLGAR 98 (637)
Q Consensus 19 ~~~lg~~~~~~Ryfvl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~~~~~~~~~~~~ 98 (637)
..+.+.+| .+|||||.++.|.|||... ..|.-+.-+..-.-||..+-....+ -|+|.|..+ ++++-|-|.
T Consensus 14 ~~~~~~n~-KkRwF~Lt~~~L~Y~k~~~----~~~~g~I~L~~i~~ve~v~~~~~~~--~~~fqivt~---~r~~yi~a~ 83 (98)
T cd01244 14 AWKKVLHF-KKRYFQLTTTHLSWAKDVQ----CKKSALIKLAAIKGTEPLSDKSFVN--VDIITIVCE---DDTMQLQFE 83 (98)
T ss_pred CCccCcCC-ceeEEEECCCEEEEECCCC----CceeeeEEccceEEEEEcCCcccCC--CceEEEEeC---CCeEEEECC
Confidence 34667555 9999999999999999332 3444444444444555444333222 278888775 368889999
Q ss_pred CHHHHHHHHHHHHHH
Q 006638 99 SPEEAAKWIRSLQEA 113 (637)
Q Consensus 99 ~~eea~~W~~~~~~a 113 (637)
|.+|...||+||+.+
T Consensus 84 s~~E~~~Wi~al~k~ 98 (98)
T cd01244 84 APVEATDWLNALEKQ 98 (98)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999999864
No 55
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.09 E-value=1.4e-05 Score=66.52 Aligned_cols=95 Identities=25% Similarity=0.321 Sum_probs=69.0
Q ss_pred eeeEEEEEeecccccccccceeeEeecceeeeeecCCCCCCCccceeeeecCceEEec-CCcceeeCceEEEEEEecCCC
Q 006638 10 IEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTD-NGRESINRKVLFVFTLYNSLD 88 (637)
Q Consensus 10 ~egW~~~~~~~~lg~~~~~~Ryfvl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed-~Gr~~~~~~~~~v~~~yn~~~ 88 (637)
++|||++..... .+.-+.||++|.+..+.+|+..+......|.....+.. +.|.. .+.+ +.-++|.|.+..+
T Consensus 1 ~~G~l~~~~~~~--~~~w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~-~~v~~~~~~~----~~~~~f~i~~~~~ 73 (96)
T cd00821 1 KEGYLLKKTGKL--RKGWKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSG-AEVEESPDDS----GRKNCFEIRTPDG 73 (96)
T ss_pred CcchhhhhhChh--hCCccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCC-CEEEECCCcC----CCCcEEEEecCCC
Confidence 479999866544 45559999999999999999666543346656666665 55543 2211 2347777776665
Q ss_pred CcceeeeccCCHHHHHHHHHHHHHH
Q 006638 89 HNEKLKLGARSPEEAAKWIRSLQEA 113 (637)
Q Consensus 89 ~~~~~~~~~~~~eea~~W~~~~~~a 113 (637)
..+.|.|.|.+|+.+|+.+|+.|
T Consensus 74 --~~~~~~~~s~~~~~~W~~~l~~~ 96 (96)
T cd00821 74 --RSYLLQAESEEEREEWIEALQSA 96 (96)
T ss_pred --cEEEEEeCCHHHHHHHHHHHhcC
Confidence 78889999999999999999864
No 56
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.04 E-value=3.1e-05 Score=69.36 Aligned_cols=92 Identities=27% Similarity=0.450 Sum_probs=60.8
Q ss_pred eeeEEEEEeecccccccccceeeEee-cceeeeeecCCCCC--CCccceeeeecCceEEe-cCCcceeeCceEEEEEEe-
Q 006638 10 IEGWLYAILVNRIGMQISRKRYFILL-DNCLNGYKMVPSSE--KEEPVKSAMIHSCIRVT-DNGRESINRKVLFVFTLY- 84 (637)
Q Consensus 10 ~egW~~~~~~~~lg~~~~~~Ryfvl~-~~~~~~yKr~P~~~--~~~pi~~~ii~~~~rVe-d~Gr~~~~~~~~~v~~~y- 84 (637)
.||||..-|. ...--++|||||. +..+.+||.+|.+. +..|+....|..+.-+. |.++. +.|.|-
T Consensus 3 k~G~L~K~g~---~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~-------~~F~i~~ 72 (102)
T cd01241 3 KEGWLHKRGE---YIKTWRPRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAECQLMKTERPRP-------NTFIIRC 72 (102)
T ss_pred EEEEEEeecC---CCCCCeeEEEEEeCCCeEEEEecCCCccCccccccCCeEEeeeeeeeccCCCc-------ceEEEEe
Confidence 7999999654 2333489999999 78898999888653 35676666665533222 22211 345553
Q ss_pred -cCC-CCcceeeeccCCHHHHHHHHHHHHHH
Q 006638 85 -NSL-DHNEKLKLGARSPEEAAKWIRSLQEA 113 (637)
Q Consensus 85 -n~~-~~~~~~~~~~~~~eea~~W~~~~~~a 113 (637)
+.. ..++ ++.|.|.||...||+||+.+
T Consensus 73 ~~~~~~~~r--~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 73 LQWTTVIER--TFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred ccCCcccCE--EEEeCCHHHHHHHHHHHHhh
Confidence 211 1122 45689999999999999876
No 57
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.02 E-value=2.8e-05 Score=69.90 Aligned_cols=96 Identities=23% Similarity=0.282 Sum_probs=63.2
Q ss_pred eeeEEEEEee-cccccccccceeeEeecceeeeeecCCCCCCCccce-eeeecCceEEe--cCCcceeeCceEEEEEEec
Q 006638 10 IEGWLYAILV-NRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVK-SAMIHSCIRVT--DNGRESINRKVLFVFTLYN 85 (637)
Q Consensus 10 ~egW~~~~~~-~~lg~~~~~~Ryfvl~~~~~~~yKr~P~~~~~~pi~-~~ii~~~~rVe--d~Gr~~~~~~~~~v~~~yn 85 (637)
.||||-.=|. =|.=-++ +.|||||.|+.|.|||+.+.. .|.+ ...++.+.-|. +.+++. .+ -=+.|.|..
T Consensus 2 ~~G~l~k~~g~~r~~K~W-krRwF~L~~~~L~y~K~~~~~---~~~~g~IdL~~~~sVk~~~~~~~~-~~-~~~~Fei~t 75 (101)
T cd01264 2 IEGQLKEKKGRWRFIKRW-KTRYFTLSGAQLLFQKGKSKD---DPDDCSIDLSKIRSVKAVAKKRRD-RS-LPKAFEIFT 75 (101)
T ss_pred cceEEeecCccceeeecc-eeEEEEEeCCEEEEEeccCcc---CCCCceEEcccceEEeeccccccc-cc-cCcEEEEEc
Confidence 5788855222 1233455 889999999999999977654 3332 22223333333 233222 11 236888865
Q ss_pred CCCCcceeeeccCCHHHHHHHHHHHHHHH
Q 006638 86 SLDHNEKLKLGARSPEEAAKWIRSLQEAA 114 (637)
Q Consensus 86 ~~~~~~~~~~~~~~~eea~~W~~~~~~a~ 114 (637)
+ ++++-|.|.|.+|+..||+++..|+
T Consensus 76 p---~rt~~l~A~se~e~e~WI~~i~~a~ 101 (101)
T cd01264 76 A---DKTYILKAKDEKNAEEWLQCLNIAV 101 (101)
T ss_pred C---CceEEEEeCCHHHHHHHHHHHHhhC
Confidence 5 4788999999999999999999873
No 58
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=97.96 E-value=9.8e-05 Score=68.16 Aligned_cols=137 Identities=15% Similarity=0.118 Sum_probs=80.1
Q ss_pred EEEEecCCHHHHHHHHhcCCCCccccccccceeEEEEeecCceEEEEEEeecCCCCCCCCCceEEEEE--EEEEcCCCeE
Q 006638 206 AVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRR--YWRREDDGTY 283 (637)
Q Consensus 206 a~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~~tdIvY~~~~~~~~P~pvs~RDFV~lR--~wrr~~DGsy 283 (637)
...+|++|+++||++|.|.+. .++|.+. ...++++. ++....++. |.+..+++.+.. ....+..+.
T Consensus 3 ~s~~i~ap~~~V~~~l~D~~~-~p~~~p~-~~~~~~~~-~~~~~~~~~--------~~~~~~g~~~~~~~~~~~~~~~~- 70 (142)
T cd08861 3 HSVTVAAPAEDVYDLLADAER-WPEFLPT-VHVERLEL-DGGVERLRM--------WATAFDGSVHTWTSRRVLDPEGR- 70 (142)
T ss_pred EEEEEcCCHHHHHHHHHhHHh-hhccCCC-ceEEEEEE-cCCEEEEEE--------EEEcCCCcEEEEEEEEEEcCCCC-
Confidence 356899999999999999996 8889998 77777776 344334442 112223333211 111222232
Q ss_pred EEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCceEEEEEEEEeCCCccccccccchhhHHHHHHHHHHHHHHHHH
Q 006638 284 VILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYLRPSSARSITIRMLERVAALRELFQ 363 (637)
Q Consensus 284 vI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~VTyi~qvDpkGwip~~~~~~~~~i~~~ml~~va~LRe~~~ 363 (637)
.|....+.-+ + +.....+.|.++|.+++ +|+|+|.+..++++.+|--.......+...+-..+++||++++
T Consensus 71 ~i~~~~~~~~------~--~~~~~~g~w~~~~~~~~-~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E 141 (142)
T cd08861 71 RIVFRQEEPP------P--PVASMSGEWRFEPLGGG-GTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAAE 141 (142)
T ss_pred EEEEEEeeCC------C--ChhhheeEEEEEECCCC-cEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHhh
Confidence 2333333210 1 11233578999999754 6999999999999987721111112222223345777777654
No 59
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.88 E-value=7e-05 Score=69.26 Aligned_cols=80 Identities=25% Similarity=0.424 Sum_probs=61.6
Q ss_pred cceeeEeecceeeeeecCCCCCCCccceeeeecCceEEecCCcce--------eeCceEEEEEEecCCCCcceeeeccCC
Q 006638 28 RKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDNGRES--------INRKVLFVFTLYNSLDHNEKLKLGARS 99 (637)
Q Consensus 28 ~~Ryfvl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~--------~~~~~~~v~~~yn~~~~~~~~~~~~~~ 99 (637)
++|||||++.+|.||+. |.+ ..|.--.++|.+.-|+..+.+. .+...-+.|+|-| .++++.|.|.|
T Consensus 34 ~kRWFvlr~s~L~Y~~~-~~~--~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t---~~R~~~l~a~s 107 (121)
T cd01254 34 QKRWFIVKESFLAYMDD-PSS--AQILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITN---SNRSLKLKCKS 107 (121)
T ss_pred cceeEEEeCCEEEEEcC-CCC--CceeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEc---CCcEEEEEeCC
Confidence 89999999999999993 333 3565566678888888655431 1123358888855 47899999999
Q ss_pred HHHHHHHHHHHHHH
Q 006638 100 PEEAAKWIRSLQEA 113 (637)
Q Consensus 100 ~eea~~W~~~~~~a 113 (637)
..++..|+++|+.|
T Consensus 108 ~~~~~~Wi~~i~~a 121 (121)
T cd01254 108 SRKLKQWMASIEDA 121 (121)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999876
No 60
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.86 E-value=0.00012 Score=65.57 Aligned_cols=94 Identities=17% Similarity=0.270 Sum_probs=67.1
Q ss_pred eeeEEEEEeecccccccccceeeEeecceeeeeecCCCCCCCccceeeeec-CceEEecCCcceeeCceEEEEEEecCCC
Q 006638 10 IEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIH-SCIRVTDNGRESINRKVLFVFTLYNSLD 88 (637)
Q Consensus 10 ~egW~~~~~~~~lg~~~~~~Ryfvl~~~~~~~yKr~P~~~~~~pi~~~ii~-~~~rVed~Gr~~~~~~~~~v~~~yn~~~ 88 (637)
.|||+..+++ .-++.|||+|=...|=|+++.+.... .--..++|. .++.|++.-= ..+.-+.|.||.+
T Consensus 4 kEG~L~K~~~-----k~~~~R~~FLFnD~LlY~~~~~~~~~-~y~~~~~i~L~~~~V~~~~~---~~~~~~~F~I~~~-- 72 (99)
T cd01220 4 RQGCLLKLSK-----KGLQQRMFFLFSDLLLYTSKSPTDQN-SFRILGHLPLRGMLTEESEH---EWGVPHCFTIFGG-- 72 (99)
T ss_pred eEEEEEEEeC-----CCCceEEEEEccceEEEEEeecCCCc-eEEEEEEEEcCceEEeeccC---CcCCceeEEEEcC--
Confidence 6999988654 34688999999888888887765431 111234443 3677775211 1134468999954
Q ss_pred CcceeeeccCCHHHHHHHHHHHHHHHh
Q 006638 89 HNEKLKLGARSPEEAAKWIRSLQEAAV 115 (637)
Q Consensus 89 ~~~~~~~~~~~~eea~~W~~~~~~a~~ 115 (637)
.+.+.+.|.|++|...||++|++||+
T Consensus 73 -~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 73 -QCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred -CeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 57799999999999999999999986
No 61
>PF15409 PH_8: Pleckstrin homology domain
Probab=97.82 E-value=5e-05 Score=66.74 Aligned_cols=84 Identities=30% Similarity=0.416 Sum_probs=57.9
Q ss_pred eEEEEEeecccccccccceeeEe--ecceeeeeecCCCC--CCCccceeeeecCceEEecCCcceeeCceEEEEEEecCC
Q 006638 12 GWLYAILVNRIGMQISRKRYFIL--LDNCLNGYKMVPSS--EKEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNSL 87 (637)
Q Consensus 12 gW~~~~~~~~lg~~~~~~Ryfvl--~~~~~~~yKr~P~~--~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~ 87 (637)
|||-.=.+++ ++=-++||||| +.-.|.||+...+. .|..||..++|.-+ +..|+.++..
T Consensus 1 G~llKkrr~~--lqG~~kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~a~is~~----~~~~~I~ids----------- 63 (89)
T PF15409_consen 1 GWLLKKRRKP--LQGWHKRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSLAVISAN----KKSRRIDIDS----------- 63 (89)
T ss_pred Ccceeecccc--CCCceeEEEEEEcCCcEEEEEecCCCCeeEeEEEccceEEEec----CCCCEEEEEc-----------
Confidence 5666633332 34449999999 99999999955543 46889988888543 2223322211
Q ss_pred CCcceeeeccCCHHHHHHHHHHHHHH
Q 006638 88 DHNEKLKLGARSPEEAAKWIRSLQEA 113 (637)
Q Consensus 88 ~~~~~~~~~~~~~eea~~W~~~~~~a 113 (637)
+ .....|.|.|.++..+|+.||+.|
T Consensus 64 g-~~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 64 G-DEIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred C-CeEEEEEcCCHHHHHHHHHHHHhc
Confidence 1 334568899999999999999987
No 62
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=97.79 E-value=0.00063 Score=61.88 Aligned_cols=110 Identities=14% Similarity=0.054 Sum_probs=77.0
Q ss_pred ecCCHHHHHHHHhcCCCCccccccccceeEEEEeecCceEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeEEEEEee
Q 006638 210 VDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTYVILYHS 289 (637)
Q Consensus 210 V~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~DGsyvI~~~S 289 (637)
|+||+++||++|.|.++ .++|-+.+.++++++.-+++..+ +.... .....+.|+......... . +....
T Consensus 1 V~ap~~~V~~~i~D~e~-~~~~~p~~~~v~vl~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~--~--~~~~~ 69 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYEN-YPRFFPPVKEVRVLERDGDGMRA-RWEVK-----FGGIKRSWTSRVTEDPPE--R--IRFEQ 69 (130)
T ss_dssp ESS-HHHHHHHHTTGGG-HHHHCTTEEEEEEEEEECCEEEE-EEEEC-----TTTTCEEEEEEEEEECTT--T--EEEES
T ss_pred CCCCHHHHHHHHHHHHH-HHHhCCCCceEEEEEeCCCeEEE-EEEEe-----cCCEEEEEEEEEEEEEee--e--eeeee
Confidence 68999999999999996 99999999999999998775444 22221 134456665544333222 2 33222
Q ss_pred cCCCCCCCCCCeEEEEEeeeeEEEEeCCC---CCceEEEEEEEEeCCCcccccc
Q 006638 290 VNHKKCPKQKGYVRACLKSGGFVITPSNQ---GKQSIVKHMLAVDWKYWKLYLR 340 (637)
Q Consensus 290 V~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~---~~~~~VTyi~qvDpkGwip~~~ 340 (637)
+. |- -....+.|.++|.++ +..|.|+|.+.++++|.+|..+
T Consensus 70 ~~--------g~--~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~ 113 (130)
T PF03364_consen 70 IS--------GP--FKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPGPLPGFL 113 (130)
T ss_dssp SE--------TT--EEEEEEEEEEEEETTECCEEEEEEEEEEEEETSSSSHHHH
T ss_pred cC--------CC--chhcEEEEEEEECCCCcCCCEEEEEEEEEEecCcHhHHHH
Confidence 21 21 234568999999985 6689999999999999999764
No 63
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.77 E-value=0.00013 Score=64.99 Aligned_cols=96 Identities=21% Similarity=0.195 Sum_probs=60.5
Q ss_pred eeeEEEE--E----eecccccccccceeeEeecceeeeeecCCCCCCCccceeeeecC-ceEEec-CCcceeeCceEEEE
Q 006638 10 IEGWLYA--I----LVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHS-CIRVTD-NGRESINRKVLFVF 81 (637)
Q Consensus 10 ~egW~~~--~----~~~~lg~~~~~~Ryfvl~~~~~~~yKr~P~~~~~~pi~~~ii~~-~~rVed-~Gr~~~~~~~~~v~ 81 (637)
|||+|.| . |...-.+.+ +.|||||.|..|.+||...... +.+.....|+- ++.|+- ..-. +-=++|
T Consensus 1 ~~g~l~rk~~~~~~g~~~~~~~W-k~r~~vL~~~~L~~ykd~~~~~-~~~~~~~~i~l~~~~i~~~~~~~----k~~~~F 74 (104)
T cd01253 1 MEGSLERKHELESGGKKASNRSW-DNVYGVLCGQSLSFYKDEKMAA-ENVHGEPPVDLTGAQCEVASDYT----KKKHVF 74 (104)
T ss_pred CCceEeEEEEeecCCcccCCCCc-ceEEEEEeCCEEEEEecCcccc-cCCCCCCcEeccCCEEEecCCcc----cCceEE
Confidence 6888887 2 444445555 9999999999999999432221 11101012222 444441 2211 112688
Q ss_pred EEecCCCCcceeeeccCCHHHHHHHHHHHHHH
Q 006638 82 TLYNSLDHNEKLKLGARSPEEAAKWIRSLQEA 113 (637)
Q Consensus 82 ~~yn~~~~~~~~~~~~~~~eea~~W~~~~~~a 113 (637)
+|-++ ..+.+-|.|.|.|+...|+.||+.|
T Consensus 75 ~l~~~--~~~~~~f~a~s~e~~~~Wi~aL~~~ 104 (104)
T cd01253 75 RLRLP--DGAEFLFQAPDEEEMSSWVRALKSA 104 (104)
T ss_pred EEEec--CCCEEEEECCCHHHHHHHHHHHhcC
Confidence 88765 3467788999999999999999753
No 64
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.75 E-value=0.00017 Score=65.27 Aligned_cols=94 Identities=19% Similarity=0.299 Sum_probs=63.4
Q ss_pred eeeEEEEEeecc------cccccccceeeEee-cceeeeeecCCCCCCCccceeeeecCceEEecCCcceeeCceEEEEE
Q 006638 10 IEGWLYAILVNR------IGMQISRKRYFILL-DNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDNGRESINRKVLFVFT 82 (637)
Q Consensus 10 ~egW~~~~~~~~------lg~~~~~~Ryfvl~-~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~ 82 (637)
+.|||+.=+..+ +.+.-=++|||||. +..|.|||.+|-+ ..|....-++.+..|.+. ... .++ =++|+
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~--~~p~G~IdL~~~~~V~~~-~~~-~~~-~~~f~ 75 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPT--TLPQGTIDMNQCTDVVDA-EAR-TGQ-KFSIC 75 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCC--cccceEEEccceEEEeec-ccc-cCC-ccEEE
Confidence 479999844442 44444589999997 6789888866422 355444445667777732 111 111 24677
Q ss_pred EecCCCCcceeeeccCCHHHHHHHHHHHH
Q 006638 83 LYNSLDHNEKLKLGARSPEEAAKWIRSLQ 111 (637)
Q Consensus 83 ~yn~~~~~~~~~~~~~~~eea~~W~~~~~ 111 (637)
|-.+ .+++-|.|.|.+|...|+++|.
T Consensus 76 I~tp---~R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 76 ILTP---DKEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred EECC---CceEEEEeCCHHHHHHHHHHHH
Confidence 7554 5788899999999999999985
No 65
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=97.68 E-value=0.0019 Score=61.53 Aligned_cols=137 Identities=11% Similarity=0.109 Sum_probs=84.4
Q ss_pred EEEEecCCHHHHHHHHhcCCCCccccccccceeEEEEeecCceEEEEEEeecCCCCCCCCCceEEEEEEE--E-EcCCCe
Q 006638 206 AVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYW--R-REDDGT 282 (637)
Q Consensus 206 a~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~~tdIvY~~~~~~~~P~pvs~RDFV~lR~w--r-r~~DGs 282 (637)
-..+|++||++||+++.|+.+ .++|.+.+.++++++. +++...+-.+.... .. .++ ..| + ..+...
T Consensus 5 ~si~i~a~~~~v~~lvaDv~~-~P~~~~~~~~~~~l~~-~~~~~~~r~~i~~~-----~~--g~~--~~w~s~~~~~~~~ 73 (146)
T cd08860 5 NSIVIDAPLDLVWDMTNDIAT-WPDLFSEYAEAEVLEE-DGDTVRFRLTMHPD-----AN--GTV--WSWVSERTLDPVN 73 (146)
T ss_pred eEEEEcCCHHHHHHHHHhhhh-hhhhccceEEEEEEEe-cCCeEEEEEEEEec-----cC--CEE--EEEEEEEEecCCC
Confidence 356899999999999999996 9999999999999986 44444433322211 11 121 222 1 223334
Q ss_pred EEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCceEEEEEEEEeCCCccccccccchhhHHHHHHHHHHHHHHHH
Q 006638 283 YVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYLRPSSARSITIRMLERVAALRELF 362 (637)
Q Consensus 283 yvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~VTyi~qvDpkGwip~~~~~~~~~i~~~ml~~va~LRe~~ 362 (637)
+.|.++.+ +. +|- ....+.|.++|++++ |+|+|......++-.|.....+...+-..+-..+++||+.+
T Consensus 74 ~~i~~~~~--~~-~p~------~~m~~~W~f~~~~~g--T~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~a 142 (146)
T cd08860 74 RTVRARRV--ET-GPF------AYMNIRWEYTEVPEG--TRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKI 142 (146)
T ss_pred cEEEEEEe--cC-CCc------ceeeeeEEEEECCCC--EEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHh
Confidence 45555422 22 221 234578999999664 99999999987752332111122233333456788888887
Q ss_pred Hh
Q 006638 363 QA 364 (637)
Q Consensus 363 ~~ 364 (637)
++
T Consensus 143 E~ 144 (146)
T cd08860 143 EA 144 (146)
T ss_pred hh
Confidence 65
No 66
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=97.64 E-value=0.002 Score=58.37 Aligned_cols=138 Identities=17% Similarity=0.116 Sum_probs=81.3
Q ss_pred eEEEEEEecCCHHHHHHHHhcCCCCccccccccceeEEEEeecCceEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCe
Q 006638 203 AIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGT 282 (637)
Q Consensus 203 ~~Ka~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~DGs 282 (637)
.++.+..|++|+++||++|.|.+. ...|.+.+...++++.-++--.+....+. . . +.+. .+. ...+...
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~d~~~-~~~w~~~~~~~~~~~~~~~~g~~~~~~~~----~-g---~~~~-~~i-~~~~~~~ 70 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLSDFGG-LHKWHPAVASCELEGGGPGVGAVRTVTLK----D-G---GTVR-ERL-LALDDAE 70 (140)
T ss_pred cEEEEEEECCCHHHHHHHHhCcCc-hhhhccCcceEEeecCCCCCCeEEEEEeC----C-C---CEEE-EEe-hhcCccC
Confidence 367788999999999999999986 78999988888776543201112221111 1 1 2221 111 1112221
Q ss_pred EEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCceEEEEEEEEeCCCccccccccchhhHHHHHHHHHHHHHHHH
Q 006638 283 YVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYLRPSSARSITIRMLERVAALRELF 362 (637)
Q Consensus 283 yvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~VTyi~qvDpkGwip~~~~~~~~~i~~~ml~~va~LRe~~ 362 (637)
-.+.++.+.- ..| .....+.|.++|++++ .|+|+|....+++|.++... ....+-..+-..+++|++++
T Consensus 71 ~~i~~~~~~~-~~~-------~~~~~~~~~~~~~~~~-~t~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 71 RRYSYRIVEG-PLP-------VKNYVATIRVTPEGDG-GTRVTWTAEFDPPEGLTDEL--ARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred CEEEEEecCC-CCC-------cccceEEEEEEECCCC-ccEEEEEEEEecCCCcchHH--HHHHHHHHHHHHHHHHHHhh
Confidence 2344444321 011 1233578999999764 69999999999998765442 22222223446677888775
No 67
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.64 E-value=0.00028 Score=62.85 Aligned_cols=95 Identities=25% Similarity=0.350 Sum_probs=65.5
Q ss_pred eeeEEEEEeecccccccccceeeEeecceeeeeecCCCC--CCCccceeeeecCceEEecCCcceeeCceEEEEEEecCC
Q 006638 10 IEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSS--EKEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNSL 87 (637)
Q Consensus 10 ~egW~~~~~~~~lg~~~~~~Ryfvl~~~~~~~yKr~P~~--~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~ 87 (637)
--|||-....+ |.+--..-|+|||...+|.+||..-.. .++.|+- |-.+|.-|.|- -++- ++|.+||+.
T Consensus 3 rkgwl~~~n~~-~m~ggsK~~WFVLt~~~L~wykd~eeKE~kyilpLd----nLk~Rdve~gf---~sk~-~~FeLfnpd 73 (110)
T cd01256 3 RKGWLSISNVG-IMKGGSKDYWFVLTSESLSWYKDDEEKEKKYMLPLD----GLKLRDIEGGF---MSRN-HKFALFYPD 73 (110)
T ss_pred eeeeEEeeccc-eecCCCcceEEEEecceeeeecccccccccceeecc----ccEEEeecccc---cCCC-cEEEEEcCc
Confidence 35898764433 333456889999999999999943221 2233321 22455445552 2223 899999876
Q ss_pred C-----CcceeeeccCCHHHHHHHHHHHHHH
Q 006638 88 D-----HNEKLKLGARSPEEAAKWIRSLQEA 113 (637)
Q Consensus 88 ~-----~~~~~~~~~~~~eea~~W~~~~~~a 113 (637)
. +.++++|+|.|.||...|+-+|=.|
T Consensus 74 ~rnvykd~k~lel~~~~~e~vdswkasflra 104 (110)
T cd01256 74 GRNVYKDYKQLELGCETLEEVDSWKASFLRA 104 (110)
T ss_pred ccccccchheeeecCCCHHHHHHHHHHHHhc
Confidence 3 4689999999999999999999877
No 68
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.60 E-value=0.00034 Score=63.39 Aligned_cols=89 Identities=18% Similarity=0.272 Sum_probs=62.4
Q ss_pred cccccccccceeeEeecceeeeeecCCCCCCCccceeeeecCceEEe-cCCcceeeCceEEEEEEecCCCCc-ceeeecc
Q 006638 20 NRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVT-DNGRESINRKVLFVFTLYNSLDHN-EKLKLGA 97 (637)
Q Consensus 20 ~~lg~~~~~~Ryfvl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVe-d~Gr~~~~~~~~~v~~~yn~~~~~-~~~~~~~ 97 (637)
.||...--..|||+|+|..|.|||.++... ..|+-... .-+|.|. |... .+.-|.+.+..+.++. +.+-|.|
T Consensus 13 ~~~~~K~~KrrwF~lk~~~L~YyK~kee~~-~~p~i~ln-l~gcev~~dv~~----~~~kf~I~l~~ps~~~~r~y~l~c 86 (106)
T cd01237 13 KKLTLKGYKQYWFTFRDTSISYYKSKEDSN-GAPIGQLN-LKGCEVTPDVNV----AQQKFHIKLLIPTAEGMNEVWLRC 86 (106)
T ss_pred chhhhhhheeEEEEEeCCEEEEEccchhcC-CCCeEEEe-cCceEEcccccc----cccceEEEEecCCccCCeEEEEEC
Confidence 344444457899999999999999877654 34432222 2356555 4310 0113999999886444 6688999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 006638 98 RSPEEAAKWIRSLQEAA 114 (637)
Q Consensus 98 ~~~eea~~W~~~~~~a~ 114 (637)
.|.++-++||.|++.|.
T Consensus 87 dsEeqya~Wmaa~rlas 103 (106)
T cd01237 87 DNEKQYAKWMAACRLAS 103 (106)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999999984
No 69
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.59 E-value=0.00036 Score=64.93 Aligned_cols=103 Identities=17% Similarity=0.271 Sum_probs=68.0
Q ss_pred eeeEEEEEeecccccccccceeeEeecceeeeeecCCCCCCCccceeeeecCceEEe--cCCcceeeCceEEEEEEecCC
Q 006638 10 IEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVT--DNGRESINRKVLFVFTLYNSL 87 (637)
Q Consensus 10 ~egW~~~~~~~~lg~~~~~~Ryfvl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVe--d~Gr~~~~~~~~~v~~~yn~~ 87 (637)
|.|+|.-..... |...-+.|||||+|..|.|||.........|+-+.-+.+++... +.-|..-.+.-=|.+++....
T Consensus 3 ~~GfL~~~q~~~-~~k~W~RRWFvL~g~~L~y~k~p~d~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~ 81 (122)
T cd01263 3 YHGFLTMFEDTS-GFGAWHRRWCALEGGEIKYWKYPDDEKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRPK 81 (122)
T ss_pred cceeEEEEeccC-CCCCceEEEEEEeCCEEEEEcCCCccccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEeccc
Confidence 788888654443 66677999999999999888843333336788888887755533 233333333333555555433
Q ss_pred --------------CCcceee-eccCCHHHHHHHHHHHHHH
Q 006638 88 --------------DHNEKLK-LGARSPEEAAKWIRSLQEA 113 (637)
Q Consensus 88 --------------~~~~~~~-~~~~~~eea~~W~~~~~~a 113 (637)
...++.- |+|-|.||-..|++||.+|
T Consensus 82 ~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 82 METDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred ccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 1222223 8899999999999999864
No 70
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.54 E-value=0.0039 Score=56.83 Aligned_cols=135 Identities=9% Similarity=-0.012 Sum_probs=81.8
Q ss_pred EEEEEEecCCHHHHHHHHhcCCCCccccccccceeEEEEeecCceEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeE
Q 006638 204 IMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTY 283 (637)
Q Consensus 204 ~Ka~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~DGsy 283 (637)
+.....|++|+++||++|.|..+ .++|.+.+.+++++.. .... + ... .|+ ...++|..... ...++..
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~~~-~~~w~~~~~~~~~~~~--~~~~--~-~~~---~~~-g~~~~~~~~v~-~~~~~~~- 69 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDFEN-LPRFMSHVESVEQLDD--TRSH--W-KAK---GPA-GLSVEWDAEIT-EQVPNER- 69 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhChhh-hHHHhhhhcEEEEcCC--CceE--E-EEe---cCC-CCcEEEEEEEe-ccCCCCE-
Confidence 45678899999999999999996 9999999888777643 1121 2 112 232 45566654221 2223332
Q ss_pred EEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCceEEEEEEEEeCCCcccccc-ccchhhHHH-HHHHHHHHHHHH
Q 006638 284 VILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYLR-PSSARSITI-RMLERVAALREL 361 (637)
Q Consensus 284 vI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~VTyi~qvDpkGwip~~~-~~~~~~i~~-~ml~~va~LRe~ 361 (637)
|.......+. ...+-|.++|.+++ +|+|+|.++.++.+.++..+ ..+...+.. .+-..+.+||++
T Consensus 70 -i~~~~~~~~~-----------~~~~~~~f~~~~~~-~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~ 136 (139)
T cd07817 70 -IAWRSVEGAD-----------PNAGSVRFRPAPGR-GTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQL 136 (139)
T ss_pred -EEEEECCCCC-----------CcceEEEEEECCCC-CeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4444433211 12366778998653 79999999999998776532 112222222 344556666666
Q ss_pred HH
Q 006638 362 FQ 363 (637)
Q Consensus 362 ~~ 363 (637)
++
T Consensus 137 aE 138 (139)
T cd07817 137 VE 138 (139)
T ss_pred hh
Confidence 53
No 71
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.47 E-value=0.0004 Score=62.24 Aligned_cols=87 Identities=21% Similarity=0.241 Sum_probs=59.3
Q ss_pred eEEEEEeecccccccccceeeEeec----ceeeeeecCCCCCCCccceeeeec-CceEEecCCcceeeCceE---EEEEE
Q 006638 12 GWLYAILVNRIGMQISRKRYFILLD----NCLNGYKMVPSSEKEEPVKSAMIH-SCIRVTDNGRESINRKVL---FVFTL 83 (637)
Q Consensus 12 gW~~~~~~~~lg~~~~~~Ryfvl~~----~~~~~yKr~P~~~~~~pi~~~ii~-~~~rVed~Gr~~~~~~~~---~v~~~ 83 (637)
||+..-|.+ .--.+ +.|||+|.+ +.+.|||..+.. .|+ ++|+ .++.|. .+|.+.+ |+|.|
T Consensus 3 G~l~K~g~~-~~K~w-K~rwF~l~~~~s~~~l~yf~~~~~~---~p~--gli~l~~~~V~-----~v~ds~~~r~~cFel 70 (98)
T cd01245 3 GNLLKRTKS-VTKLW-KTLYFALILDGSRSHESLLSSPKKT---KPI--GLIDLSDAYLY-----PVHDSLFGRPNCFQI 70 (98)
T ss_pred CccccCCCC-ccccc-ceeEEEEecCCCCceEEEEcCCCCC---Ccc--ceeeccccEEE-----EccccccCCCeEEEE
Confidence 666553321 12234 779999998 999999966643 454 3443 566665 3455555 99999
Q ss_pred ecCCCCcceeeeccCCHHHHHHHHHHHHH
Q 006638 84 YNSLDHNEKLKLGARSPEEAAKWIRSLQE 112 (637)
Q Consensus 84 yn~~~~~~~~~~~~~~~eea~~W~~~~~~ 112 (637)
+++..+ ...-+.|.+ +|+.+||++++.
T Consensus 71 ~~~~~~-~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 71 VERALP-TVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred ecCCCC-eEEEEeCCH-HHHHHHHHHHhc
Confidence 999874 344566666 999999999975
No 72
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=97.42 E-value=2.6e-05 Score=87.27 Aligned_cols=92 Identities=29% Similarity=0.285 Sum_probs=77.7
Q ss_pred CCCCCceEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCceEEEEEEEEeCCCccccccc
Q 006638 262 WGMQRRDLLVRRYWRREDDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYLRP 341 (637)
Q Consensus 262 ~pvs~RDFV~lR~wrr~~DGsyvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~VTyi~qvDpkGwip~~~~ 341 (637)
.|...|||+++| |.++++..|++|...+...| |||.+..+.|.|+|++.+ +++|+|+..+|++|..|.|++
T Consensus 574 ~ph~~~~~~ViR-------gacv~a~~svk~~~a~~l~~-vrA~~~~~r~liep~g~g-~sr~~~i~r~dlkg~~~~wy~ 644 (674)
T KOG2200|consen 574 RPHPSRDFGVIR-------GACVLAPLSVKVSMAIQLGG-VRATVLDSRFLIEPCGGG-QSRVTHICRVDLKGRSPEWYN 644 (674)
T ss_pred CCCCCCCceeee-------eeeeecccccchhhhhhhcc-chhhhhhhhhhccccCCc-chhhhhhhhhhcccCCchhhh
Confidence 367899999998 78999999999977777788 999999999999999877 689999999999999999987
Q ss_pred c-chhhHHHHHHHHHHHHHHHHHhhc
Q 006638 342 S-SARSITIRMLERVAALRELFQAKA 366 (637)
Q Consensus 342 ~-~~~~i~~~ml~~va~LRe~~~~~~ 366 (637)
+ |...+. ..++.+|+.|....
T Consensus 645 k~fg~~c~----~~~~~~r~sf~~~~ 666 (674)
T KOG2200|consen 645 KSFGHLCC----LEVARIRDSFHTLQ 666 (674)
T ss_pred ccccchhh----hhhcccchhhcccc
Confidence 5 445443 45778888776554
No 73
>PRK10724 hypothetical protein; Provisional
Probab=97.37 E-value=0.0043 Score=60.11 Aligned_cols=129 Identities=17% Similarity=0.212 Sum_probs=85.3
Q ss_pred CceEEEEEEecCCHHHHHHHHhcCCCCccccccccceeEEEEeecCceEEEEEEeecCCCCCCCCCceEEEEEEEEEcCC
Q 006638 201 HPAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDD 280 (637)
Q Consensus 201 ~~~~Ka~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~D 280 (637)
-..++...+|++|++++|+++.|.+. .++|-+.+.+++++++-++.. +...+.. .. ++ ..-|.....+. .+
T Consensus 14 M~~i~~~~~v~~s~~~v~~lv~Dve~-yp~flp~~~~s~vl~~~~~~~-~a~l~v~---~~-g~-~~~f~srv~~~--~~ 84 (158)
T PRK10724 14 MPQISRTALVPYSAEQMYQLVNDVQS-YPQFLPGCTGSRVLESTPGQM-TAAVDVS---KA-GI-SKTFTTRNQLT--SN 84 (158)
T ss_pred CCeEEEEEEecCCHHHHHHHHHHHHH-HHHhCcccCeEEEEEecCCEE-EEEEEEe---eC-Cc-cEEEEEEEEec--CC
Confidence 34688889999999999999999996 999999999999999866542 2222111 11 12 33454433332 23
Q ss_pred CeEEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCceEEEEEEEEeCCCcccccc-ccchhhHHHHH
Q 006638 281 GTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYLR-PSSARSITIRM 351 (637)
Q Consensus 281 GsyvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~VTyi~qvDpkGwip~~~-~~~~~~i~~~m 351 (637)
+ -|....++.| .+ ...|.|.++|++++ .|+|++.+..+++-.+++.+ ..+.+.++.+|
T Consensus 85 ~--~I~~~~~~Gp--------F~--~l~g~W~f~p~~~~-~t~V~~~l~fef~s~l~~~~~~~~~~~~~~~m 143 (158)
T PRK10724 85 Q--SILMQLVDGP--------FK--KLIGGWKFTPLSQE-ACRIEFHLDFEFTNKLIELAFGRVFKELASNM 143 (158)
T ss_pred C--EEEEEecCCC--------hh--hccceEEEEECCCC-CEEEEEEEEEEEchHHHHHHHHHHHHHHHHHH
Confidence 3 2444444321 22 35789999999754 69999999999988877642 22334444444
No 74
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.0012 Score=68.59 Aligned_cols=94 Identities=32% Similarity=0.574 Sum_probs=67.7
Q ss_pred eeeEEEEEeecccccccccceeeEeecceeeeee--cCCCCCCCccceeeeecCceEEecCCcceeeCceEEEEEEecCC
Q 006638 10 IEGWLYAILVNRIGMQISRKRYFILLDNCLNGYK--MVPSSEKEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNSL 87 (637)
Q Consensus 10 ~egW~~~~~~~~lg~~~~~~Ryfvl~~~~~~~yK--r~P~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~ 87 (637)
-|||+..+|.|+. .++ ..|+|||..++|.||- .+-.-.|..|+-..-|- .|||. +.=|+|.+||+.
T Consensus 262 REGWLlKlgg~rv-ktW-KrRWFiLtdNCLYYFe~tTDKEPrGIIpLeNlsir---~VedP-------~kP~cfEly~ps 329 (395)
T KOG0930|consen 262 REGWLLKLGGNRV-KTW-KRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIR---EVEDP-------KKPNCFELYIPS 329 (395)
T ss_pred ccceeeeecCCcc-cch-hheeEEeecceeeeeeeccCCCCCcceecccccee---eccCC-------CCCCeEEEecCC
Confidence 5899999999854 344 7899999999999997 22222345555443331 24432 245789999988
Q ss_pred CCccee-------------------eeccCCHHHHHHHHHHHHHHHh
Q 006638 88 DHNEKL-------------------KLGARSPEEAAKWIRSLQEAAV 115 (637)
Q Consensus 88 ~~~~~~-------------------~~~~~~~eea~~W~~~~~~a~~ 115 (637)
++..++ .|.|.|.||.+.||++++.++.
T Consensus 330 ~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is 376 (395)
T KOG0930|consen 330 NKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAIS 376 (395)
T ss_pred CCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhc
Confidence 755443 4778999999999999999987
No 75
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=97.02 E-value=0.079 Score=47.85 Aligned_cols=133 Identities=12% Similarity=0.087 Sum_probs=75.0
Q ss_pred EEEEEEecCCHHHHHHHHhcCCCCccccccccceeEEEEeecCceEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeE
Q 006638 204 IMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTY 283 (637)
Q Consensus 204 ~Ka~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~DGsy 283 (637)
+..+..|++||++||++|.|... ...|.+.+..++++.. +...+.. .+... +. .-+..+.....+++.
T Consensus 4 ~~~~~~v~a~~e~V~~~l~d~~~-~~~w~~~~~~~~~~~~--~~~~~~~-~~~~~---g~----~~~~~~i~~~~~~~~- 71 (139)
T PF10604_consen 4 VEVSIEVPAPPEAVWDLLSDPEN-WPRWWPGVKSVELLSG--GGPGTER-TVRVA---GR----GTVREEITEYDPEPR- 71 (139)
T ss_dssp EEEEEEESS-HHHHHHHHTTTTG-GGGTSTTEEEEEEEEE--CSTEEEE-EEEEC---SC----SEEEEEEEEEETTTT-
T ss_pred EEEEEEECCCHHHHHHHHhChhh-hhhhhhceEEEEEccc--cccceeE-EEEec---cc----cceeEEEEEecCCCc-
Confidence 45677899999999999999986 8899999998887762 2222222 22211 11 222222222223232
Q ss_pred EEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCceEEEEEEEEeCCCcccccc--ccchhhHHHHHHHHHHHHHHH
Q 006638 284 VILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYLR--PSSARSITIRMLERVAALREL 361 (637)
Q Consensus 284 vI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~VTyi~qvDpkGwip~~~--~~~~~~i~~~ml~~va~LRe~ 361 (637)
.+..+.+ ..++. ...+.|.+.|.+++ |+|++....++ |+ +.++ ..+...+-..+-..+++|++.
T Consensus 72 ~~~~~~~-------~~~~~---~~~~~~~~~~~~~g--t~v~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~ 137 (139)
T PF10604_consen 72 RITWRFV-------PSGFT---NGTGRWRFEPVGDG--TRVTWTVEFEP-GL-PGWLAGPLLRPAVKRIVREALENLKRA 137 (139)
T ss_dssp EEEEEEE-------SSSSC---EEEEEEEEEEETTT--EEEEEEEEEEE-SC-TTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEE-------eccee---EEEEEEEEEEcCCC--EEEEEEEEEEE-ec-cchhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 2333332 12222 23567999999765 99999999998 32 2222 112222222344557777766
Q ss_pred H
Q 006638 362 F 362 (637)
Q Consensus 362 ~ 362 (637)
+
T Consensus 138 ~ 138 (139)
T PF10604_consen 138 A 138 (139)
T ss_dssp H
T ss_pred c
Confidence 5
No 76
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.87 E-value=0.0082 Score=55.49 Aligned_cols=99 Identities=22% Similarity=0.183 Sum_probs=64.5
Q ss_pred eeeEEEE-E-----e-ecccccccccceeeEeecceeeeeecC--CCCC-C-CccceeeeecCce-EEecCCcceeeCce
Q 006638 10 IEGWLYA-I-----L-VNRIGMQISRKRYFILLDNCLNGYKMV--PSSE-K-EEPVKSAMIHSCI-RVTDNGRESINRKV 77 (637)
Q Consensus 10 ~egW~~~-~-----~-~~~lg~~~~~~Ryfvl~~~~~~~yKr~--P~~~-~-~~pi~~~ii~~~~-rVed~Gr~~~~~~~ 77 (637)
.||+|+| . | ..++|...=++||.||+|..|..||.. +... . ..+-...-|.+.+ .|. ....+-
T Consensus 2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia-----~dy~Kr 76 (117)
T cd01230 2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRA-----SDYSKK 76 (117)
T ss_pred CCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEee-----ccccCC
Confidence 4788888 1 1 223444444999999999999999943 2111 1 1122333354433 454 223344
Q ss_pred EEEEEEecCCCCcceeeeccCCHHHHHHHHHHHHHHHh
Q 006638 78 LFVFTLYNSLDHNEKLKLGARSPEEAAKWIRSLQEAAV 115 (637)
Q Consensus 78 ~~v~~~yn~~~~~~~~~~~~~~~eea~~W~~~~~~a~~ 115 (637)
-+||+|-.+.+. .+-|-|.+.||+..|+.+|..|++
T Consensus 77 ~~VF~L~~~~g~--~~lfqA~~~ee~~~Wi~~I~~~~~ 112 (117)
T cd01230 77 PHVFRLRTADWR--EFLFQTSSLKELQSWIERINVVAA 112 (117)
T ss_pred CcEEEEEcCCCC--EEEEECCCHHHHHHHHHHHHHHHH
Confidence 578888876654 455669999999999999999987
No 77
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.78 E-value=0.044 Score=49.37 Aligned_cols=134 Identities=13% Similarity=0.139 Sum_probs=71.4
Q ss_pred EEEEecCCHHHHHHHHhcCCCCccccccccceeEEEEeec--CceEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeE
Q 006638 206 AVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLD--GHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTY 283 (637)
Q Consensus 206 a~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID--~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~DGsy 283 (637)
....|++|+++||++|.|..+ .++|.+.+..++.+..-. ..+ .+..... ++ +...+ +. .+.... +.+.
T Consensus 3 ~~~~i~ap~~~Vw~~l~d~~~-~~~w~~~~~~~~~~~~~~~~~g~-~~~~~~~---~~-g~~~~-~~-~~v~~~-~p~~- 72 (140)
T cd08865 3 ESIVIERPVEEVFAYLADFEN-APEWDPGVVEVEKITDGPVGVGT-RYHQVRK---FL-GRRIE-LT-YEITEY-EPGR- 72 (140)
T ss_pred eEEEEcCCHHHHHHHHHCccc-hhhhccCceEEEEcCCCCCcCcc-EEEEEEE---ec-CceEE-EE-EEEEEe-cCCc-
Confidence 467899999999999999996 889999887766654211 111 1221111 11 11111 11 111111 1222
Q ss_pred EEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCceEEEEEEEEeCCCccccccccchhhHH-HHHHHHHHHHHHHH
Q 006638 284 VILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYLRPSSARSIT-IRMLERVAALRELF 362 (637)
Q Consensus 284 vI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~VTyi~qvDpkGwip~~~~~~~~~i~-~~ml~~va~LRe~~ 362 (637)
.+...... +.++ ..+-|.+.|.++ .|+|+|-...+++|+..- +..+..... ..+-..+++|++.+
T Consensus 73 ~~~~~~~~--------~~~~---~~~~~~~~~~~~--~t~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~lk~~~ 138 (140)
T cd08865 73 RVVFRGSS--------GPFP---YEDTYTFEPVGG--GTRVRYTAELEPGGFARL-LDPLMAPAFRRRARAALENLKALL 138 (140)
T ss_pred EEEEEecC--------CCcc---eEEEEEEEEcCC--ceEEEEEEEEccchhHHH-HHHHHHHHHhhhhHHHHHHHHHHh
Confidence 22233221 1122 246799999865 499999999999776432 111222222 22334556666555
Q ss_pred H
Q 006638 363 Q 363 (637)
Q Consensus 363 ~ 363 (637)
+
T Consensus 139 e 139 (140)
T cd08865 139 E 139 (140)
T ss_pred h
Confidence 4
No 78
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=96.60 E-value=0.019 Score=53.30 Aligned_cols=101 Identities=26% Similarity=0.300 Sum_probs=69.9
Q ss_pred eeeEEEEEeecc--cccccccceeeEeecceeeee--ecCCCCCC--CccceeeeecCceEEecC-----CcceeeCceE
Q 006638 10 IEGWLYAILVNR--IGMQISRKRYFILLDNCLNGY--KMVPSSEK--EEPVKSAMIHSCIRVTDN-----GRESINRKVL 78 (637)
Q Consensus 10 ~egW~~~~~~~~--lg~~~~~~Ryfvl~~~~~~~y--Kr~P~~~~--~~pi~~~ii~~~~rVed~-----Gr~~~~~~~~ 78 (637)
.-.|||.+.++. .+..-+|.|||-|.......| ..+|.... ..=++++.|+.=..|.|. |++.-. --
T Consensus 11 ~G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~--~~ 88 (123)
T PF12814_consen 11 IGEWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPD--HN 88 (123)
T ss_pred cccEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccc--cc
Confidence 456999987766 345689999999999555444 35675421 334577888887777753 431111 23
Q ss_pred EEEEEecCCCCcceeeeccCCHHHHHHHHHHHHHHHh
Q 006638 79 FVFTLYNSLDHNEKLKLGARSPEEAAKWIRSLQEAAV 115 (637)
Q Consensus 79 ~v~~~yn~~~~~~~~~~~~~~~eea~~W~~~~~~a~~ 115 (637)
|+|.|.. ..+.|.|.|.|.|++..|+.+|+..+.
T Consensus 89 ~si~i~t---~~R~L~l~a~s~~~~~~W~~aL~~L~~ 122 (123)
T PF12814_consen 89 KSIIIVT---PDRSLDLTAPSRERHEIWFNALRYLLQ 122 (123)
T ss_pred eEEEEEc---CCeEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 4555553 357999999999999999999998764
No 79
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.44 E-value=0.16 Score=44.18 Aligned_cols=114 Identities=16% Similarity=0.049 Sum_probs=66.0
Q ss_pred EEEEEecCCHHHHHHHHhcCCCCccccccccceeEEEEeecCceEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeEE
Q 006638 205 MAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTYV 284 (637)
Q Consensus 205 Ka~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~DGsyv 284 (637)
+....|++|+++||++|.|.+. ..+|.+.+..+++++.........+ ... . . +....++.. +.........+.
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~-~-~~~~~~~~~-~v~~~~~~~~~~ 74 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPER-WPEWSPGLERVEVLGGGEGGVGARF-VGG--R-K-GGRRLTLTS-EVTEVDPPRPGR 74 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChhh-hhhhCcccceEEEcCCCCccceeEE-EEE--e-c-CCccccceE-EEEEecCCCceE
Confidence 4577899999999999999995 8999999998887764222211111 111 0 0 011111111 111111111111
Q ss_pred EEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCceEEEEEEEEeCCCccc
Q 006638 285 ILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKL 337 (637)
Q Consensus 285 I~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~VTyi~qvDpkGwip 337 (637)
....+..+. ....+.|.+.|.+++ .|+|++....+++++.+
T Consensus 75 ~~~~~~~~~-----------~~~~~~~~~~~~~~~-~t~v~~~~~~~~~~~~~ 115 (141)
T cd07812 75 FRVTGGGGG-----------VDGTGEWRLEPEGDG-GTRVTYTVEYDPPGPLL 115 (141)
T ss_pred EEEecCCCC-----------cceeEEEEEEECCCC-cEEEEEEEEEecCCcch
Confidence 111111111 234578999999652 59999999999999874
No 80
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.24 E-value=0.13 Score=48.25 Aligned_cols=141 Identities=9% Similarity=-0.017 Sum_probs=74.0
Q ss_pred EEEEEecCCHHHHHHHHhcCCCCccccccccceeEEEEeecCceEEEEEEeecCCCCCCCCCceEEEEEEEEE-c-CCCe
Q 006638 205 MAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRR-E-DDGT 282 (637)
Q Consensus 205 Ka~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr-~-~DGs 282 (637)
.....|++||+.|+++|.|++. ...|.+.++ .++.+++++-..-.+.+. ++++ ..|-.--.+.. . +...
T Consensus 2 ~~~~~v~a~pe~vw~~l~D~~~-~~~~~pg~~---~~~~~~~~~~~~~~~~~~----g~~~-~~~~~~~~~~~~~~~~~~ 72 (146)
T cd07823 2 ENEFTVPAPPDRVWALLLDIER-VAPCLPGAS---LTEVEGDDEYKGTVKVKL----GPIS-ASFKGTARLLEDDEAARR 72 (146)
T ss_pred CceEEecCCHHHHHHHhcCHHH-HHhcCCCce---eccccCCCeEEEEEEEEE----ccEE-EEEEEEEEEEeccCCCcE
Confidence 3467899999999999999885 777877544 444456554333322221 1221 12211111111 1 1112
Q ss_pred EEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCceEEEEEEEEeCCCccccccccchhhHHHHH-HHHHHHHHHH
Q 006638 283 YVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYLRPSSARSITIRM-LERVAALREL 361 (637)
Q Consensus 283 yvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~VTyi~qvDpkGwip~~~~~~~~~i~~~m-l~~va~LRe~ 361 (637)
+.+...... ....|.+++ ..-|.+.|.+ + .|+|+|...++++|.++.+..........++ -..+++|++.
T Consensus 73 ~~~~~~g~~----~~~~g~~~~---~~~~~l~~~~-~-gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~ 143 (146)
T cd07823 73 AVLEATGKD----ARGQGTAEA---TVTLRLSPAG-G-GTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEAR 143 (146)
T ss_pred EEEEEEEec----CCCcceEEE---EEEEEEEecC-C-cEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHH
Confidence 222211100 000122222 2257888843 3 6999999999999999876543333433333 3345666665
Q ss_pred HH
Q 006638 362 FQ 363 (637)
Q Consensus 362 ~~ 363 (637)
++
T Consensus 144 ~e 145 (146)
T cd07823 144 LA 145 (146)
T ss_pred hc
Confidence 43
No 81
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.21 E-value=0.019 Score=52.82 Aligned_cols=98 Identities=18% Similarity=0.314 Sum_probs=56.6
Q ss_pred eeeEEEEEeecccccccccceeeEeecceeeeeecCCCCCCCccceeeeecCceEEec-CCcceeeCceEEEEEEe----
Q 006638 10 IEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTD-NGRESINRKVLFVFTLY---- 84 (637)
Q Consensus 10 ~egW~~~~~~~~lg~~~~~~Ryfvl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed-~Gr~~~~~~~~~v~~~y---- 84 (637)
.||||+|+-..---| ..+|++|+.|.+.||+..- +.++.|-.....=+.|+. +|--...+..-++|.|-
T Consensus 2 kEGWmVHyT~~d~~r---KRhYWrLDsK~Itlf~~e~---~skyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T~~~ 75 (117)
T cd01239 2 KEGWMVHYTSSDNRR---KKHYWRLDSKAITLYQEES---GSRYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEIRTTTN 75 (117)
T ss_pred ccceEEEEecCccce---eeeEEEecCCeEEEEEcCC---CCeeeEEeehHHheEEeccCCCcCCCCCCCcEEEEEecCE
Confidence 599999964433222 3679999999999999532 346666666666566653 22111111222222221
Q ss_pred ----------c-CCCCcceee--eccCCHHHHHHHHHHHHHH
Q 006638 85 ----------N-SLDHNEKLK--LGARSPEEAAKWIRSLQEA 113 (637)
Q Consensus 85 ----------n-~~~~~~~~~--~~~~~~eea~~W~~~~~~a 113 (637)
+ +.+...+.+ ......+-|..|-.|+++|
T Consensus 76 vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 76 VYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred EEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 1 112122222 3445678889999999886
No 82
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.21 E-value=0.21 Score=46.70 Aligned_cols=109 Identities=15% Similarity=0.116 Sum_probs=64.4
Q ss_pred EEEEEEecCCHHHHHHHHhcCCCCccccccccceeEEEEe-ecCceEEEEE-EeecCCCCCCCCCceEEEE-EEEEEcCC
Q 006638 204 IMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEH-LDGHSDVVHK-LLYSDWLPWGMQRRDLLVR-RYWRREDD 280 (637)
Q Consensus 204 ~Ka~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~-ID~~tdIvY~-~~~~~~~P~pvs~RDFV~l-R~wrr~~D 280 (637)
|-....|++||++||+++.|.+. .++|.+.+.++++++. -+......+. .... ..+..+.+. +.....+.
T Consensus 3 ~~~~~~i~ap~e~Vw~~~tD~~~-~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~------~~~~~~~~~~~v~~~~p~ 75 (146)
T cd07824 3 FHTVWRIPAPPEAVWDVLVDAES-WPDWWPGVERVVELEPGDEAGIGARRRYTWRG------LLPYRLRFELRVTRIEPL 75 (146)
T ss_pred ceEEEEecCCHHHHHHHHhChhh-cchhhhceEEEEEccCCCCCCcceEEEEEEEe------cCCcEEEEEEEEEeecCC
Confidence 44567899999999999999996 8999999988888863 2222111221 1111 112223221 11111122
Q ss_pred CeEEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCceEEEEEEEEeCCCc
Q 006638 281 GTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYW 335 (637)
Q Consensus 281 GsyvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~VTyi~qvDpkGw 335 (637)
..+ ..+.. .+ .++ .+.|.|+|.++ .|+|++-..++.+|-
T Consensus 76 ~~~--~~~~~-g~--------~~~---~~~~~~~~~~~--gt~vt~~~~~~~~~~ 114 (146)
T cd07824 76 SLL--EVRAS-GD--------LEG---VGRWTLAPDGS--GTVVRYDWEVRTTKP 114 (146)
T ss_pred cEE--EEEEE-Ee--------eeE---EEEEEEEEcCC--CEEEEEEEEEEcCHH
Confidence 222 22221 11 122 36799999755 499999999999883
No 83
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=95.73 E-value=0.26 Score=45.75 Aligned_cols=139 Identities=11% Similarity=0.033 Sum_probs=72.5
Q ss_pred eEEEEEEecCCHHHHHHHHhcCCCCccccccccceeEEEEe-e-----cCceEEEEEEeecCCCCCCCCCceEEEEEEEE
Q 006638 203 AIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEH-L-----DGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWR 276 (637)
Q Consensus 203 ~~Ka~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~-I-----D~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wr 276 (637)
.+....+|++|+++||+++.|..+ .++|++.+.....++. . .....+.+ ... .. ..+-...+..+
T Consensus 3 ~~~~s~~I~ap~e~V~~~i~D~~~-~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~---~~~---~~-~~~~~~~v~~~- 73 (150)
T cd07818 3 RVERSIVINAPPEEVFPYVNDLKN-WPEWSPWEKLDPDMKRTYSGPDSGVGASYSW---EGN---DK-VGEGEMEITES- 73 (150)
T ss_pred EEEEEEEEeCCHHHHHHHHhCccc-CcccCchhhcCcceEEEecCCCCCCCeEEEE---ecC---Cc-ccceEEEEEec-
Confidence 356678899999999999999996 8999998776554432 1 11112222 110 00 01111111111
Q ss_pred EcCCCeEEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCceEEEEEEEEeCCCccc-cccccc-hhhHHHHHHHH
Q 006638 277 REDDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKL-YLRPSS-ARSITIRMLER 354 (637)
Q Consensus 277 r~~DGsyvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~VTyi~qvDpkGwip-~~~~~~-~~~i~~~ml~~ 354 (637)
..+. .+..+... .-|.. ....+.|.++|.++ .|+|+|.+..+..|..+ .++..+ ...+-..+-..
T Consensus 74 -~p~~--~i~~~~~~--~~~~~------~~~~~~~~~~~~~~--gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (150)
T cd07818 74 -VPNE--RIEYELRF--IKPFE------ATNDVEFTLEPVGG--GTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKG 140 (150)
T ss_pred -CCCc--EEEEEEEe--cCCcc------ccceEEEEEEEcCC--ceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHH
Confidence 1221 12222221 11110 12247899999955 49999999999876433 111111 12222223345
Q ss_pred HHHHHHHHH
Q 006638 355 VAALRELFQ 363 (637)
Q Consensus 355 va~LRe~~~ 363 (637)
+++|+++++
T Consensus 141 l~~lk~~~E 149 (150)
T cd07818 141 LANLKAVLE 149 (150)
T ss_pred HHHHHHHhh
Confidence 667776654
No 84
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=95.65 E-value=0.67 Score=41.94 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=34.1
Q ss_pred EEEEEEecCCHHHHHHHHhcCCCCccccccccceeEEEEee
Q 006638 204 IMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHL 244 (637)
Q Consensus 204 ~Ka~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~I 244 (637)
+.....|+||+++||+++.|+.. .++|.+.+..++++...
T Consensus 3 ~~~~~~i~Ap~~~Vw~~~~d~~~-~~~w~~~~~~~~~~~~~ 42 (138)
T cd08862 3 FEATIVIDAPPERVWAVLTDVEN-WPAWTPSVETVRLEGPP 42 (138)
T ss_pred EEEEEEEcCCHHHHHHHHHhhhh-cccccCcceEEEEecCC
Confidence 55678899999999999999986 89999998888776543
No 85
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=94.92 E-value=1.2 Score=41.69 Aligned_cols=117 Identities=11% Similarity=0.004 Sum_probs=69.9
Q ss_pred EEEEecCCHHHHHHHHhcCCCCccccccccceeEEEEeecCceEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeEEE
Q 006638 206 AVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTYVI 285 (637)
Q Consensus 206 a~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~DGsyvI 285 (637)
+...|++|+++|+++|.|+ ..|-.++..++.+|.++ +.--.-.+.+ + ++++.+=-..++....++...+.+
T Consensus 1 Gs~~v~a~~~~vw~~l~D~----~~l~~ciPG~~~~e~~~-~~~~~~~~v~---v-G~i~~~~~g~~~~~~~~~~~~~~~ 71 (140)
T PF06240_consen 1 GSFEVPAPPEKVWAFLSDP----ENLARCIPGVESIEKVG-DEYKGKVKVK---V-GPIKGTFDGEVRITEIDPPESYTL 71 (140)
T ss_dssp EEEEECS-HHHHHHHHT-H----HHHHHHSTTEEEEEEEC-TEEEEEEEEE---S-CCCEEEEEEEEEEEEEETTTEEEE
T ss_pred CcEEecCCHHHHHHHhcCH----HHHHhhCCCcEEeeecC-cEEEEEEEEE---e-ccEEEEEEEEEEEEEcCCCcceEe
Confidence 3567999999999999994 47889999999999999 5432222222 1 245543333344444445555544
Q ss_pred EEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCceEEEEEEEEeCCCccccccc
Q 006638 286 LYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYLRP 341 (637)
Q Consensus 286 ~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~VTyi~qvDpkGwip~~~~ 341 (637)
....-.. .+-+.+... -.+...+++. |+|+|-..++..|.+..+..
T Consensus 72 ~~~g~g~------~~~~~~~~~---~~~~~~~~~~-T~v~~~~~~~~~G~la~~g~ 117 (140)
T PF06240_consen 72 EFEGRGR------GGGSSASAN---ITLSLEDDGG-TRVTWSADVEVGGPLASLGQ 117 (140)
T ss_dssp EEEEEEC------TCCEEEEEE---EEEEECCCTC-EEEEEEEEEEEECHHHHC-H
T ss_pred eeeccCC------ccceEEEEE---EEEEcCCCCC-cEEEEEEEEEEccCHHHhhH
Confidence 4433321 122233222 2234444444 99999999999999876543
No 86
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.66 E-value=0.64 Score=42.64 Aligned_cols=98 Identities=14% Similarity=0.187 Sum_probs=69.8
Q ss_pred eeeEEEEEeecccccccccceeeEeecceeeeeecCCCCCCCccceeeeec-CceEEec--CCccee-eCceEEEEEEec
Q 006638 10 IEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIH-SCIRVTD--NGRESI-NRKVLFVFTLYN 85 (637)
Q Consensus 10 ~egW~~~~~~~~lg~~~~~~Ryfvl~~~~~~~yKr~P~~~~~~pi~~~ii~-~~~rVed--~Gr~~~-~~~~~~v~~~yn 85 (637)
|+|=|.+++.++. ..+-|+|+|=.+.|=+=|++-.. +..-.-++.|+ ..+.|+| .|++.. +...=..|.|||
T Consensus 4 ~~Gel~~~s~~~g---~~q~R~~FLFD~~LI~CKkd~~r-~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~ 79 (109)
T cd01224 4 LQGEATRQKQNKG---WNSSRVLFLFDHQMVLCKKDLIR-RDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYS 79 (109)
T ss_pred EeeeEEEEecccC---CcccEEEEEecceEEEEeccccc-CCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEEE
Confidence 5666666654321 24579999999999888865433 34555555554 5788885 676663 234667899999
Q ss_pred CCCCcceeeeccCCHHHHHHHHHHHHH
Q 006638 86 SLDHNEKLKLGARSPEEAAKWIRSLQE 112 (637)
Q Consensus 86 ~~~~~~~~~~~~~~~eea~~W~~~~~~ 112 (637)
... ..-+.+-|.|+|+-.+||+||+.
T Consensus 80 ~~~-~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 80 EST-DEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred cCC-CeEEEEEECCHHHHHHHHHHHHH
Confidence 854 55678999999999999999975
No 87
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=94.55 E-value=2.1 Score=38.48 Aligned_cols=112 Identities=13% Similarity=0.129 Sum_probs=59.9
Q ss_pred EEEEEEecCCHHHHHHHHhcCCCCccccccccceeEEEEeecCceEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeE
Q 006638 204 IMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTY 283 (637)
Q Consensus 204 ~Ka~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~DGsy 283 (637)
+....+|++|+++||++|.|... ...|.+.+...+... +...+.+.+. .. .+ . .+.+.+.......+-+.
T Consensus 2 v~~~~~i~ap~~~Vw~~~~d~~~-~~~w~~~~~~~~~~~-~~~G~~~~~~-~~---~~-~--~~~~~~~~~v~~~~p~~- 71 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLTDFPS-YPEWNPFVRSATGLS-LALGARLRFV-VK---LP-G--GPPRSFKPRVTEVEPPR- 71 (141)
T ss_pred eEEEEEecCCHHHHHHHHhcccc-ccccChhheeEeccc-cCCCCEEEEE-Ee---CC-C--CCcEEEEEEEEEEcCCC-
Confidence 45678899999999999999985 899997766544431 2333334332 11 11 1 12222221222222222
Q ss_pred EEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCceEEEEEEEEeCCCcc
Q 006638 284 VILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWK 336 (637)
Q Consensus 284 vI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~VTyi~qvDpkGwi 336 (637)
.+..+...-+ + +. ......|.++|.+++ .|+|++.. +..|..
T Consensus 72 ~~~~~~~~~~---~--~~---~~~~~~~~~~~~~~~-~T~~~~~~--~~~g~~ 113 (141)
T cd07822 72 RLAWRGGLPF---P--GL---LDGEHSFELEPLGDG-GTRFVHRE--TFSGLL 113 (141)
T ss_pred EeEEEecCCC---C--cE---eeEEEEEEEEEcCCC-cEEEEEee--EEEEEE
Confidence 3333332211 1 11 123357999998544 69988864 334543
No 88
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.26 E-value=0.38 Score=43.66 Aligned_cols=89 Identities=12% Similarity=0.198 Sum_probs=57.7
Q ss_pred cccccccccceeeEeecceeeeeecCCCCCCCccceeeeecC-ceEEecCCcceeeCceEEEEEEecCCCCcceeeeccC
Q 006638 20 NRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHS-CIRVTDNGRESINRKVLFVFTLYNSLDHNEKLKLGAR 98 (637)
Q Consensus 20 ~~lg~~~~~~Ryfvl~~~~~~~yKr~P~~~~~~pi~~~ii~~-~~rVed~Gr~~~~~~~~~v~~~yn~~~~~~~~~~~~~ 98 (637)
.++|+.=+..|||+|=+..|=|=+..+..+ .--..++|+- ++.|++..=. ..+-..|.|+++ .+.+.+.|.
T Consensus 11 ~K~~rk~~~~R~ffLFnD~LvY~~~~~~~~--~~~~~~~i~L~~~~v~~~~d~---~~~~n~f~I~~~---~kSf~v~A~ 82 (104)
T cd01218 11 TKMCRKKPKQRQFFLFNDILVYGNIVISKK--KYNKQHILPLEGVQVESIEDD---GIERNGWIIKTP---TKSFAVYAA 82 (104)
T ss_pred EEeecCCCceEEEEEecCEEEEEEeecCCc--eeeEeeEEEccceEEEecCCc---ccccceEEEecC---CeEEEEEcC
Confidence 456777788899999988885533333221 1222334432 5666532100 112345777775 568889999
Q ss_pred CHHHHHHHHHHHHHHHhh
Q 006638 99 SPEEAAKWIRSLQEAAVK 116 (637)
Q Consensus 99 ~~eea~~W~~~~~~a~~~ 116 (637)
|++|-..|+++|++||++
T Consensus 83 s~~eK~eWl~~i~~ai~~ 100 (104)
T cd01218 83 TETEKREWMLHINKCVTD 100 (104)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999999984
No 89
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=93.73 E-value=0.33 Score=44.65 Aligned_cols=99 Identities=23% Similarity=0.272 Sum_probs=53.1
Q ss_pred eeeEEEE------Eeecc--cccccccceeeEeecceeeeeec--CCCC--CC-------CccceeeeecCceEEecCCc
Q 006638 10 IEGWLYA------ILVNR--IGMQISRKRYFILLDNCLNGYKM--VPSS--EK-------EEPVKSAMIHSCIRVTDNGR 70 (637)
Q Consensus 10 ~egW~~~------~~~~~--lg~~~~~~Ryfvl~~~~~~~yKr--~P~~--~~-------~~pi~~~ii~~~~rVed~Gr 70 (637)
.|||++| -|... -.|++ ..=|.||.|..|.+||- .|.. .. ..|+.+..|.+.+--...+-
T Consensus 2 keG~l~RK~~~~~~gkk~~~~~R~W-k~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY 80 (119)
T PF15410_consen 2 KEGILMRKHELESGGKKASRSKRSW-KQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDY 80 (119)
T ss_dssp -EEEEEEEEEEECTTCC---S---E-EEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTB
T ss_pred ceEEEEEEEEEcCCCCCcCCCCCCc-cEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCccc
Confidence 5899999 12221 34555 55699999999999994 2222 11 13444455554333333333
Q ss_pred ceeeCceEEEEEEecCCCCcceeeeccCCHHHHHHHHHHHHHHHh
Q 006638 71 ESINRKVLFVFTLYNSLDHNEKLKLGARSPEEAAKWIRSLQEAAV 115 (637)
Q Consensus 71 ~~~~~~~~~v~~~yn~~~~~~~~~~~~~~~eea~~W~~~~~~a~~ 115 (637)
.. ++-+|-+++ ....++-|-|.|.+|...||.++.-+++
T Consensus 81 ~K--r~~VFrL~~----~dg~e~Lfqa~~~~~m~~Wi~~IN~~AA 119 (119)
T PF15410_consen 81 TK--RKNVFRLRT----ADGSEYLFQASDEEEMNEWIDAINYAAA 119 (119)
T ss_dssp TT--CSSEEEEE-----TTS-EEEEE-SSHHHHHHHHHHHHHH--
T ss_pred cc--CCeEEEEEe----CCCCEEEEECCCHHHHHHHHHHHhhhcC
Confidence 22 333444432 3356677999999999999999988764
No 90
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=92.98 E-value=0.78 Score=44.03 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=72.4
Q ss_pred eEEEEEEecCCHHHHHHHHhcCCCCccccccccceeEEEEeecCceEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCe
Q 006638 203 AIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGT 282 (637)
Q Consensus 203 ~~Ka~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~DGs 282 (637)
.+.....|+.+|+++|+++.|.+. .++.-+-+...+|+++ +++.-+--.... ...=|.--.-|-.. ..+.
T Consensus 3 ~~~~s~lv~y~a~~mF~LV~dV~~-YP~FlP~C~~s~v~~~-~~~~l~A~l~V~------~k~i~e~F~Trv~~--~~~~ 72 (146)
T COG2867 3 QIERTALVPYSASQMFDLVNDVES-YPEFLPWCSASRVLER-NERELIAELDVG------FKGIRETFTTRVTL--KPTA 72 (146)
T ss_pred eeEeeeeccCCHHHHHHHHHHHHh-CchhccccccceEecc-CcceeEEEEEEE------hhheeeeeeeeeee--cCch
Confidence 466678899999999999999995 9999999999999987 344322111110 00001111111111 1111
Q ss_pred EEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCceEEEEEEEEeCCCccccc
Q 006638 283 YVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYL 339 (637)
Q Consensus 283 yvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~VTyi~qvDpkGwip~~ 339 (637)
-+|....+.-| .| -+.|+|-++|+++. .|+|...+.-+.+..+-+.
T Consensus 73 ~~I~~~l~~GP--------Fk--~L~~~W~F~pl~~~-~ckV~f~ldfeF~s~ll~~ 118 (146)
T COG2867 73 RSIDMKLIDGP--------FK--YLKGGWQFTPLSED-ACKVEFFLDFEFKSRLLGA 118 (146)
T ss_pred hhhhhhhhcCC--------hh--hhcCceEEEECCCC-ceEEEEEEEeeehhHHHHH
Confidence 13443333221 11 35689999999654 8999999999999977543
No 91
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=92.98 E-value=0.65 Score=43.03 Aligned_cols=89 Identities=15% Similarity=0.248 Sum_probs=62.4
Q ss_pred ccceeeEeecceeeeeecCCCC--CCCccceeeeecCceEEecCCccee---eCceEEEEEEecCCCCcceeeeccCCHH
Q 006638 27 SRKRYFILLDNCLNGYKMVPSS--EKEEPVKSAMIHSCIRVTDNGRESI---NRKVLFVFTLYNSLDHNEKLKLGARSPE 101 (637)
Q Consensus 27 ~~~Ryfvl~~~~~~~yKr~P~~--~~~~pi~~~ii~~~~rVed~Gr~~~---~~~~~~v~~~yn~~~~~~~~~~~~~~~e 101 (637)
++-||.+|=++.|=.=|+.-.. .++--.|.++.=..++|+++..... ..+--|.|-+-.+.+ ...+++.|.|+|
T Consensus 20 ~k~RyiFLFDk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~~~-~~~~~f~~Ktee 98 (116)
T cd01223 20 TKLRYIFLFDKAVIVCKALGDNTGDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHKQG-KTGFTFYFKTEH 98 (116)
T ss_pred CceeEEEEecceEEEEEecCCCCCCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEecCC-CccEEEEeCCHH
Confidence 6799999999999888844222 1234456666666778886532222 224456666666544 345899999999
Q ss_pred HHHHHHHHHHHHHhh
Q 006638 102 EAAKWIRSLQEAAVK 116 (637)
Q Consensus 102 ea~~W~~~~~~a~~~ 116 (637)
+-.+||++|+.|+..
T Consensus 99 ~K~kWm~al~~a~sn 113 (116)
T cd01223 99 LRKKWLKALEMAMSN 113 (116)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999763
No 92
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=92.29 E-value=5.1 Score=36.05 Aligned_cols=137 Identities=8% Similarity=-0.057 Sum_probs=68.2
Q ss_pred EEEEEEecCCHHHHHHHHhcCCCCccccccccceeEEEEeecCceEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCeE
Q 006638 204 IMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGTY 283 (637)
Q Consensus 204 ~Ka~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~DGsy 283 (637)
+....+|++|+++||++|.|.+. -+.|.+.....++-....+. ..+.. .. ..+........++.+ .++-
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~~-~~~w~~~~~~~~~~~~~Gg~--~~~~~-~~---~~g~~~~~~~~i~~~--~~~~-- 70 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPEL-LAQWFGPTTTAEMDLRVGGR--WFFFM-TG---PDGEEGWVSGEVLEV--EPPR-- 70 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHHH-HHhhhCcCCceEEcccCCce--EEEEE-EC---CCCCEEeccEEEEEE--cCCC--
Confidence 45677899999999999999985 88998752222222222222 22211 11 001111111111121 2222
Q ss_pred EEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCceEEEEEEEEeCCCccccccccchhhHHHHHHHHHHHHHHHHH
Q 006638 284 VILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYLRPSSARSITIRMLERVAALRELFQ 363 (637)
Q Consensus 284 vI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~VTyi~qvDpkGwip~~~~~~~~~i~~~ml~~va~LRe~~~ 363 (637)
.+..+...-+. |+ .. .....|.++|.++ .|+|++....-+.+- + . ..+...+...+-..+++||++++
T Consensus 71 ~i~~~~~~~~~-~~---~~---~~~~~~~~~~~~~--~T~v~~~~~~~~~~~-~-~-~~~~~~~~~~~~~~l~~lk~~~E 138 (139)
T cd07814 71 RLVFTWAFSDE-TP---GP---ETTVTVTLEETGG--GTRLTLTHSGFPEED-A-E-QEAREGMEEGWTGTLDRLKALLE 138 (139)
T ss_pred eEEEEecccCC-CC---CC---ceEEEEEEEECCC--CEEEEEEEEccChHh-H-H-HHHHhCHhhHHHHHHHHHHHHhh
Confidence 23333222111 11 11 1245688999974 599988876655431 1 0 11223333334456778887765
No 93
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=91.30 E-value=11 Score=34.46 Aligned_cols=30 Identities=27% Similarity=0.315 Sum_probs=25.9
Q ss_pred EEEEEEecCCHHHHHHHHhcCCCCccccccc
Q 006638 204 IMAVGVVDGTSEAIFQTLMSLGSSRSEWDFC 234 (637)
Q Consensus 204 ~Ka~gvV~aspe~VfelL~D~~~~R~eWD~~ 234 (637)
+.....|+|||+.||++|.|... .++|++.
T Consensus 2 i~~~~~i~ap~e~Vw~~l~d~~~-~~~W~~~ 31 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLADPRR-HPEIDGS 31 (144)
T ss_pred eEEEEEEeCCHHHHHHHHhCccc-cceeCCC
Confidence 45567899999999999999996 9999864
No 94
>KOG3845 consensus MLN, STAR and related lipid-binding proteins [Lipid transport and metabolism]
Probab=90.94 E-value=0.011 Score=61.16 Aligned_cols=157 Identities=8% Similarity=-0.121 Sum_probs=101.9
Q ss_pred CEEEEeeCCEEEEEEeecCCCCCccCCCCceEEEEEEecCCHHHHHHHHhcCCCCccccccccceeEEEEeecCceEEEE
Q 006638 173 WKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVH 252 (637)
Q Consensus 173 Wkl~~~knGVrIy~~~~~~~~~~~~~s~~~~~Ka~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~~tdIvY 252 (637)
|.+.+..+-|.+..+..+.+ .+...++..+..-........+.-+. .+..|+..-.-...++.+..++++..
T Consensus 27 ~s~~k~~~~v~~~~~a~~~~-------~~~i~~v~~~~~lf~~~~~~~i~~~~-~i~~~~~g~~v~~~~~~~~~~~~~~~ 98 (241)
T KOG3845|consen 27 WSVAKTLKLVTVESLAGEKP-------KGNISRVRRFFCLFVTEDLVFISLLW-LIELLQNGPEVYNMLEKIQKNTDIWT 98 (241)
T ss_pred HHHHhhcceeEEeccCCcCc-------CCcccccceeeccccccchheeecch-hhHHHhccchHHHHHHHHHhheeeee
Confidence 55555556566665544322 23344444444332222222222222 13344444355667778888888877
Q ss_pred EEeecCCCCCCCCCceEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCC-CceEEEEEEEEe
Q 006638 253 KLLYSDWLPWGMQRRDLLVRRYWRREDDGTYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQG-KQSIVKHMLAVD 331 (637)
Q Consensus 253 ~~~~~~~~P~pvs~RDFV~lR~wrr~~DGsyvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~-~~~~VTyi~qvD 331 (637)
..+. .+....+++|+|+...+..+...+......++++++.+++...++|+..+++|++..|++.. ..+.-.-..+.|
T Consensus 99 s~~~-~~~~~i~~~~~~i~~~~v~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~~~~~~~~~~~d 177 (241)
T KOG3845|consen 99 SEFD-SFNVDIFRPRVFIDSGSVFRLEHMINIPVTTCVSRAFLSAKVILVRGYNHPCGVFCVPLPIEPFILAWLREWFLD 177 (241)
T ss_pred EecH-hhhhhcccccccCCcceEeehhhccccccceeccchhhcccceeeeccCCcceEEEEEcCCcchhHHHHHHHHhh
Confidence 6654 33445789999999999988887767777888999999999999999999999999999542 223333345678
Q ss_pred CCCcccc
Q 006638 332 WKYWKLY 338 (637)
Q Consensus 332 pkGwip~ 338 (637)
.+|-.+.
T Consensus 178 ~rg~~~~ 184 (241)
T KOG3845|consen 178 LRGLPQE 184 (241)
T ss_pred cccCCCc
Confidence 8887764
No 95
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=90.47 E-value=11 Score=35.63 Aligned_cols=119 Identities=9% Similarity=0.010 Sum_probs=73.3
Q ss_pred EEEEEEecCCHHHHHHHHhcCCC-CccccccccceeEEEEeecCceEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCe
Q 006638 204 IMAVGVVDGTSEAIFQTLMSLGS-SRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGT 282 (637)
Q Consensus 204 ~Ka~gvV~aspe~VfelL~D~~~-~R~eWD~~~~~~~vVE~ID~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~DGs 282 (637)
+..+..|+||+++|++++.+... ....|-+.+..+++++-=++--.|..+.+.+ .. ..+ .+.- ..-..++..
T Consensus 3 ~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~----~~-~~~-~~kE-~l~~~D~~~ 75 (148)
T cd07816 3 LEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGP----GG-KVK-YVKE-RIDAVDEEN 75 (148)
T ss_pred EEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcC----CC-cce-EEEE-EEEEEcccc
Confidence 56788999999999999999873 2467888899999886422222355444421 11 111 1211 222224445
Q ss_pred EEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCceEEEEEEEEeCCCc
Q 006638 283 YVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYW 335 (637)
Q Consensus 283 yvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~VTyi~qvDpkGw 335 (637)
..+.++-++-+... . .-....+.+.+.|.+++ .|.|.|...-++.+-
T Consensus 76 ~~~~y~vveg~~~~--~---~~~~y~~t~~v~~~~~~-~t~v~Wt~~ye~~~~ 122 (148)
T cd07816 76 KTYKYTVIEGDVLK--D---GYKSYKVEIKFVPKGDG-GCVVKWTIEYEKKGD 122 (148)
T ss_pred cEEEEEEEeccccc--C---ceEEEEEEEEEEECCCC-CEEEEEEEEEEECCC
Confidence 66666655322111 0 12345678889998544 799999999997764
No 96
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=90.10 E-value=3.2 Score=38.26 Aligned_cols=97 Identities=16% Similarity=0.232 Sum_probs=61.5
Q ss_pred ceeeEEEEEeecccccccccceeeEeecceeeeeecCCCCC---C----CccceeeeecCceEEecC--CcceeeCceEE
Q 006638 9 KIEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSE---K----EEPVKSAMIHSCIRVTDN--GRESINRKVLF 79 (637)
Q Consensus 9 ~~egW~~~~~~~~lg~~~~~~Ryfvl~~~~~~~yKr~P~~~---~----~~pi~~~ii~~~~rVed~--Gr~~~~~~~~~ 79 (637)
.+||=|-.+.+.+ .-++.|||+|=+..|=+=|++.... | .-=+|.-+.=..+.|.|. +. ..-.
T Consensus 5 I~EG~L~ki~~~~---~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~~-----~~kn 76 (112)
T cd01261 5 IMEGTLTRVGPSK---KAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDSS-----EYKN 76 (112)
T ss_pred cccCcEEEEeccc---CCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCCCc-----ccCc
Confidence 4788887777654 3346899999999987777543211 1 111222222224555532 22 1234
Q ss_pred EEEEecCCCCcceeeeccCCHHHHHHHHHHHHHHHh
Q 006638 80 VFTLYNSLDHNEKLKLGARSPEEAAKWIRSLQEAAV 115 (637)
Q Consensus 80 v~~~yn~~~~~~~~~~~~~~~eea~~W~~~~~~a~~ 115 (637)
.|.|.++. ..-+.+-|.|+||-..||++|..|+.
T Consensus 77 aF~I~~~~--~~s~~l~Akt~eeK~~Wm~~l~~~~~ 110 (112)
T cd01261 77 AFEIILKD--GNSVIFSAKNAEEKNNWMAALISVQT 110 (112)
T ss_pred eEEEEcCC--CCEEEEEECCHHHHHHHHHHHHHHhc
Confidence 56666654 34688999999999999999999976
No 97
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=89.74 E-value=1.8 Score=39.40 Aligned_cols=95 Identities=16% Similarity=0.209 Sum_probs=59.5
Q ss_pred eeeEEEEEeecccccccccceeeEee--cceeeeeecCCCC----CC--CccceeeeecCceEEecCCcceeeCceEEEE
Q 006638 10 IEGWLYAILVNRIGMQISRKRYFILL--DNCLNGYKMVPSS----EK--EEPVKSAMIHSCIRVTDNGRESINRKVLFVF 81 (637)
Q Consensus 10 ~egW~~~~~~~~lg~~~~~~Ryfvl~--~~~~~~yKr~P~~----~~--~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~ 81 (637)
++||||.-..+.+|-++- +.|+... ++.+.|---.|.+ .+ ..+.+=++-.+..|-.|.-- -=|+|
T Consensus 1 k~GYLy~~~k~~~~~~Wv-k~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~l~sc~~r~~~~~d------RRFCF 73 (104)
T cd01249 1 KEGYLYMQEKSKFGGSWT-KYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLTLKSCSRRKTESID------KRFCF 73 (104)
T ss_pred CCceEEEEcCCCCCCeEE-EEEEEEEcCCcEEEEEecccccccccCcccccceEEeeeeccccccCCcc------ceeeE
Confidence 589999988888888885 4344433 3455554433432 11 22223333334444444211 22889
Q ss_pred EEecCCCCcceeeeccCCHHHHHHHHHHHHH
Q 006638 82 TLYNSLDHNEKLKLGARSPEEAAKWIRSLQE 112 (637)
Q Consensus 82 ~~yn~~~~~~~~~~~~~~~eea~~W~~~~~~ 112 (637)
.|-.+..+ ..++|-|.|..+-..||+|+..
T Consensus 74 ei~~~~~~-~~~~lQA~Se~~~~~Wi~A~dg 103 (104)
T cd01249 74 DVEVEEKP-GVITMQALSEKDRRLWIEAMDG 103 (104)
T ss_pred eeeecCCC-CeEEEEecCHHHHHHHHHhhcC
Confidence 99777665 6688999999999999999864
No 98
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.62 E-value=1.1 Score=41.28 Aligned_cols=102 Identities=17% Similarity=0.229 Sum_probs=72.1
Q ss_pred eeeEEEEEeecccccccccceeeEeecceeeeeecCCCCCCCccce-eeeecCceEEecCCcceeeCceEEEEEE-ecCC
Q 006638 10 IEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVK-SAMIHSCIRVTDNGRESINRKVLFVFTL-YNSL 87 (637)
Q Consensus 10 ~egW~~~~~~~~lg~~~~~~Ryfvl~~~~~~~yKr~P~~~~~~pi~-~~ii~~~~rVed~Gr~~~~~~~~~v~~~-yn~~ 87 (637)
+|||||. ..-|+.==.+|||||+..=|.|+-.+-+...-.+.. ...=++++=..=.|++.+..-.=|.|+| .++.
T Consensus 2 ~~g~Lyl---K~~gkKsWKk~~f~LR~SGLYy~~Kgksk~srdL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~~ 78 (114)
T cd01259 2 MEGPLYL---KADGKKSWKKYYFVLRSSGLYYFPKEKTKNTRDLACLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVGD 78 (114)
T ss_pred ccceEEE---ccCCCccceEEEEEEeCCeeEEccCCCcCCHHHHHHHHhcccCcEEEEechhhccCCCCCceEEEecccc
Confidence 6899998 233555558999999999997776554332211222 2222456666668999999888999999 4443
Q ss_pred CC--cceee-eccCCHHHHHHHHHHHHHHH
Q 006638 88 DH--NEKLK-LGARSPEEAAKWIRSLQEAA 114 (637)
Q Consensus 88 ~~--~~~~~-~~~~~~eea~~W~~~~~~a~ 114 (637)
.. ++-|+ |-|.+++--..|+.||+-|.
T Consensus 79 q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 79 QSKGSQSIKYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred CcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence 32 57777 88889999999999999874
No 99
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.42 E-value=3 Score=39.17 Aligned_cols=100 Identities=25% Similarity=0.263 Sum_probs=62.8
Q ss_pred eeeEEEEEeecccc-----cccccceeeEeecceeeeeecCCCCCCCccceeeeecCceEEecCCccee---------eC
Q 006638 10 IEGWLYAILVNRIG-----MQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDNGRESI---------NR 75 (637)
Q Consensus 10 ~egW~~~~~~~~lg-----~~~~~~Ryfvl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~~---------~~ 75 (637)
-.|++..+.-++.. +.-.+.|||+|=+..|=|=|++... .--|+--.--+.+.|++..-... ..
T Consensus 5 K~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK~~~--~f~V~dy~~r~~l~V~~~e~~~~~~~~~~~~~~~ 82 (125)
T cd01221 5 KRGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKKLGS--TFVVFDYAPRSFLRVEKIEPDNQKIPLGSNLVGR 82 (125)
T ss_pred EEeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEecCCC--eEEEEeeccccceEEeecccccccccccccccCC
Confidence 35777776544332 2224568999999988777766522 12222112244677774322211 34
Q ss_pred ceEEEEEE-ecCCCCcceeeeccCCHHHHHHHHHHHH
Q 006638 76 KVLFVFTL-YNSLDHNEKLKLGARSPEEAAKWIRSLQ 111 (637)
Q Consensus 76 ~~~~v~~~-yn~~~~~~~~~~~~~~~eea~~W~~~~~ 111 (637)
..+|..++ -|..++...+.|.|.|.+|-.+||+||+
T Consensus 83 ~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 83 PNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred CceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 45566654 4566888889999999999999999985
No 100
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=89.41 E-value=15 Score=33.72 Aligned_cols=108 Identities=10% Similarity=0.017 Sum_probs=63.0
Q ss_pred EEEEecCCHHHHHHHHhcCCCCccccccccceeEEEEeecCce---EEEEEEeecCCCCCCCCCceEEEEEEEEEcCCCe
Q 006638 206 AVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHS---DVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDGT 282 (637)
Q Consensus 206 a~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~~t---dIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~DGs 282 (637)
.+..|++|+++||+++.|..+ -+.|.+.+..++++..-++.. ..+...... + +.. +.........+.+.
T Consensus 3 ~s~~I~ap~e~V~~~~~d~~~-~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~--~--~~~---~~w~~~it~~~p~~ 74 (137)
T cd07820 3 RSTVIPAPIEEVFDFHSRPDN-LERLTPPWLEFAVLGRTPGLIYGGARVTYRLRH--F--GIP---QRWTTEITEVEPPR 74 (137)
T ss_pred EEEEcCCCHHHHHHHHcCcch-HHhcCCCCCCeEEEecCCCcccCCcEEEEEEEe--c--CCc---eEEEEEEEEEcCCC
Confidence 456799999999999999996 999999999998886332221 223333332 1 221 21111111122233
Q ss_pred EEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCceEEEEEEEEeCCC
Q 006638 283 YVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKY 334 (637)
Q Consensus 283 yvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~VTyi~qvDpkG 334 (637)
+ +...++. |-++ .....+.++|.++ .|.||+.+..++.|
T Consensus 75 ~-f~~~~~~--------G~~~--~w~h~~~f~~~~~--gT~vt~~v~~~~p~ 113 (137)
T cd07820 75 R-FVDEQVS--------GPFR--SWRHTHRFEAIGG--GTLMTDRVEYRLPL 113 (137)
T ss_pred e-EEEEecc--------CCch--hCEEEEEEEECCC--ceEEEEEEEEeCCc
Confidence 2 3333331 1111 1223567888865 49999999999854
No 101
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=88.33 E-value=0.65 Score=50.21 Aligned_cols=100 Identities=25% Similarity=0.411 Sum_probs=63.1
Q ss_pred ccccceeeEEEEEeecccccccccceeeEeec-ceeeeeecCCCCCC--Cccceeeee-cCceEEecCCcceeeCceEEE
Q 006638 5 RNESKIEGWLYAILVNRIGMQISRKRYFILLD-NCLNGYKMVPSSEK--EEPVKSAMI-HSCIRVTDNGRESINRKVLFV 80 (637)
Q Consensus 5 ~~~~~~egW~~~~~~~~lg~~~~~~Ryfvl~~-~~~~~yKr~P~~~~--~~pi~~~ii-~~~~rVed~Gr~~~~~~~~~v 80 (637)
+..-..|||+-.-|- -=+.+ |.|||+|.. -.+=-||.+|.+.. ..|+-.-.| ++-+|-.|+-|- .+|.|
T Consensus 12 ~~~vvkEgWlhKrGE--~IknW-RpRYF~l~~DG~~~Gyr~kP~~~~~~p~pLNnF~v~~cq~m~~erPrP----ntFii 84 (516)
T KOG0690|consen 12 QEDVVKEGWLHKRGE--HIKNW-RPRYFLLFNDGTLLGYRSKPKEVQPTPEPLNNFMVRDCQTMKTERPRP----NTFII 84 (516)
T ss_pred hhhhHHhhhHhhcch--hhhcc-cceEEEEeeCCceEeeccCCccCCCCcccccchhhhhhhhhhccCCCC----ceEEE
Confidence 334468999976221 11334 899999963 24447999998854 456655555 344555555443 24444
Q ss_pred EEEecCCCCccee--eeccCCHHHHHHHHHHHHHHHh
Q 006638 81 FTLYNSLDHNEKL--KLGARSPEEAAKWIRSLQEAAV 115 (637)
Q Consensus 81 ~~~yn~~~~~~~~--~~~~~~~eea~~W~~~~~~a~~ 115 (637)
=|+-= +-.| ++.+.++++...|++|++.++.
T Consensus 85 RcLQW----TTVIERTF~ves~~eRq~W~~AIq~vsn 117 (516)
T KOG0690|consen 85 RCLQW----TTVIERTFYVESAEERQEWIEAIQAVSN 117 (516)
T ss_pred Eeeee----eeeeeeeeecCCHHHHHHHHHHHHHHhh
Confidence 44321 2223 3789999999999999998765
No 102
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=88.15 E-value=3.7 Score=36.81 Aligned_cols=81 Identities=20% Similarity=0.217 Sum_probs=56.4
Q ss_pred ccceeeEeecceeeeeecCCCCCCCccceeeeecCceEEecCCcceeeCceEEEEEEecCCCCcceeeeccCCHHHHHHH
Q 006638 27 SRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNSLDHNEKLKLGARSPEEAAKW 106 (637)
Q Consensus 27 ~~~Ryfvl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~~~~~~~~~~~~~~eea~~W 106 (637)
.+-||++|=.+.|=+=|+... .--.|+-|.=++++|.|+=.+ .-..|.|........++.+-|.|.|+-+.|
T Consensus 16 ~~eR~vFLFe~~ll~~K~~~~---~y~~K~~i~~~~l~i~e~~~~-----d~~~F~v~~~~~p~~~~~l~A~s~e~K~~W 87 (97)
T cd01222 16 GKPRLLFLFQTMLLIAKPRGD---KYQFKAYIPCKNLMLVEHLPG-----EPLCFRVIPFDDPKGALQLTARNREEKRIW 87 (97)
T ss_pred CCceEEEEecccEEEEEecCC---eeEEEEEEEecceEEecCCCC-----CCcEEEEEecCCCceEEEEEecCHHHHHHH
Confidence 456999998888877775332 244466655567888863211 125555554443346889999999999999
Q ss_pred HHHHHHHHh
Q 006638 107 IRSLQEAAV 115 (637)
Q Consensus 107 ~~~~~~a~~ 115 (637)
+++|+.|+-
T Consensus 88 ~~~i~~~i~ 96 (97)
T cd01222 88 TQQLKRAML 96 (97)
T ss_pred HHHHHHHhh
Confidence 999999974
No 103
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=87.93 E-value=10 Score=36.67 Aligned_cols=126 Identities=14% Similarity=0.039 Sum_probs=68.8
Q ss_pred EEEEEEecCCHHHHHHHHhcCCCCccccccccceeEEEEeecCceEEEEEEeecCCCCCCCCCceEEE-EEEEE-EcCCC
Q 006638 204 IMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLV-RRYWR-REDDG 281 (637)
Q Consensus 204 ~Ka~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~~tdIvY~~~~~~~~P~pvs~RDFV~-lR~wr-r~~DG 281 (637)
|.++-.|.+||++|++.|.|++. .. .++..++-+++.++.. -+..+++ . ++++ ..|-. ++.-. .+...
T Consensus 3 ~~G~f~V~~p~e~Vw~~L~dpe~-~a---~ciPG~qs~e~~g~e~-~~~v~l~---i-g~l~-~~~~g~~~~~~v~~~~~ 72 (146)
T COG3427 3 YEGTFRVAAPPEAVWEFLNDPEQ-VA---ACIPGVQSVETNGDEY-TAKVKLK---I-GPLK-GTFSGRVRFVNVDEPPR 72 (146)
T ss_pred ccceEEecCCHHHHHHHhcCHHH-HH---hhcCCcceeeecCCeE-EEEEEEe---e-ccee-EEEEEEEEEccccCCCc
Confidence 44566799999999999999874 33 6778888898887743 3333333 1 2455 33322 11111 11222
Q ss_pred eEEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCceEEEEEEEEeCCCccccccccchhhHHHH
Q 006638 282 TYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYLRPSSARSITIR 350 (637)
Q Consensus 282 syvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~VTyi~qvDpkGwip~~~~~~~~~i~~~ 350 (637)
+|+|-..-- |--.--.......+.|.+.+ |+|+|...+|.+|-+-++-+..-...+-+
T Consensus 73 ~~~i~g~G~---------~~~g~~~~~~~v~l~~~g~g--t~v~w~~~~~~gg~laqlGsr~i~~~~~k 130 (146)
T COG3427 73 SITINGSGG---------GAAGFADGTVDVQLEPSGEG--TRVNWFADANVGGKLAQLGSRLIDSVARK 130 (146)
T ss_pred EEEEEeecc---------cccceeeeeeEEEEEEcCCC--cEEEEEEEccccHHHHHHhHHHHHHHHHH
Confidence 333332110 00000011123445565544 99999999999998765533333343333
No 104
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=87.62 E-value=4.1 Score=37.55 Aligned_cols=105 Identities=19% Similarity=0.285 Sum_probs=59.3
Q ss_pred ceeeEEEEEeeccc--ccccccceeeEeecceeeeeecCCCCCCCccceeeeecCceE---EecCCcceee-CceEEEEE
Q 006638 9 KIEGWLYAILVNRI--GMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIR---VTDNGRESIN-RKVLFVFT 82 (637)
Q Consensus 9 ~~egW~~~~~~~~l--g~~~~~~Ryfvl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~r---Ved~Gr~~~~-~~~~~v~~ 82 (637)
+|||||-.=..+.. .+.+ ..+|.|+.+.-+-.|-......+..|.--.=++.-+- |+.--.-... ...=+||.
T Consensus 1 ~lEGwlsvP~~~~~~~k~gW-~r~yvVv~~~Kl~lYd~e~~~~~~~p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~ 79 (112)
T cd01242 1 RMEGWLSLPNRTNKSRKPGW-KKQYVVVSSRKILFYNDEQDKENSTPSMILDIDKLFHVRPVTQGDVYRADAKEIPKIFQ 79 (112)
T ss_pred CcceeEEccCCCCccccCCc-eEEEEEEeCCEEEEEecCccccCCCcEEEEEccceeeeecccHHHeeecCcccCCeEEE
Confidence 58999977333233 2345 6679999999999998333221122322111111111 1100000111 22237787
Q ss_pred EecCCCCcceeeeccCCHHHHHHHHHHHHHHHh
Q 006638 83 LYNSLDHNEKLKLGARSPEEAAKWIRSLQEAAV 115 (637)
Q Consensus 83 ~yn~~~~~~~~~~~~~~~eea~~W~~~~~~a~~ 115 (637)
|--. +++..+-|=|.|.+|-.+|..++..-|.
T Consensus 80 I~~~-~~~~~lllLA~s~~ek~kWV~~L~~~~~ 111 (112)
T cd01242 80 ILYA-NEARDLLLLAPQTDEQNKWVSRLVKKIP 111 (112)
T ss_pred EEeC-CccceEEEEeCCchHHHHHHHHHHHhcc
Confidence 7553 3457777888899999999999976543
No 105
>PF15408 PH_7: Pleckstrin homology domain
Probab=81.93 E-value=1 Score=39.53 Aligned_cols=92 Identities=20% Similarity=0.281 Sum_probs=56.8
Q ss_pred eeEEEEEeecccccccccceeeEeecceeeeeecCC-CCCCCccceeeeecCceEEecCCcceeeC--ceEEEEEEecCC
Q 006638 11 EGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVP-SSEKEEPVKSAMIHSCIRVTDNGRESINR--KVLFVFTLYNSL 87 (637)
Q Consensus 11 egW~~~~~~~~lg~~~~~~Ryfvl~~~~~~~yKr~P-~~~~~~pi~~~ii~~~~rVed~Gr~~~~~--~~~~v~~~yn~~ 87 (637)
||.+|+...+.| ++||.||.||.+-||-.+. ..-..--+++-++. +-+|| |-+-..| =+-|-|-.|...
T Consensus 1 EGYLY~~E~~si-----~rRF~~L~~K~~~~~~~KGG~~L~sF~L~~s~~s-~Pm~~--~~~A~~N~Gi~A~G~L~~~~~ 72 (104)
T PF15408_consen 1 EGYLYRDEDSSI-----QRRFVMLRSKQFNMYEDKGGQYLCSFQLSSSVVS-HPMVN--FSQAVPNLGINAFGFLMYSPS 72 (104)
T ss_pred CCeEEEeccchH-----HHHHHhhhhceeEEecccCCceeeeeehhhhhhh-ccccc--ccccCCCCCeeEEEEEEecCC
Confidence 789999777666 7899999999999998333 22112222333321 11222 3333333 233444455544
Q ss_pred CCcceeeeccCCHHHHHHHHHHHHH
Q 006638 88 DHNEKLKLGARSPEEAAKWIRSLQE 112 (637)
Q Consensus 88 ~~~~~~~~~~~~~eea~~W~~~~~~ 112 (637)
..++++=|.+++--.+|+.++-.
T Consensus 73 --~~~~~~FA~S~~~~~~Wi~~mN~ 95 (104)
T PF15408_consen 73 --RRHVQCFASSKKVCQSWIQVMNS 95 (104)
T ss_pred --cchhhhhhhHHHHHHHHHHHhcC
Confidence 46777778999999999988754
No 106
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=80.55 E-value=23 Score=33.17 Aligned_cols=104 Identities=14% Similarity=0.130 Sum_probs=65.6
Q ss_pred ceeeEEEEEeecccccccccceeeEeecceeeeeecCCCC---CCCccceeeee-cCceEEecCC---ccee-eCceEEE
Q 006638 9 KIEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSS---EKEEPVKSAMI-HSCIRVTDNG---RESI-NRKVLFV 80 (637)
Q Consensus 9 ~~egW~~~~~~~~lg~~~~~~Ryfvl~~~~~~~yKr~P~~---~~~~pi~~~ii-~~~~rVed~G---r~~~-~~~~~~v 80 (637)
.|||||-.=..+++.+.+ ..+|.|+.+.-+-.|-..+.. +...|...+-+ |..+-|---+ .-.. ....=||
T Consensus 3 ~~EGwvkvP~~~~~krGW-~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~I 81 (122)
T cd01243 3 AYEGHVKIPKPGGVKKGW-QRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPCI 81 (122)
T ss_pred cceeeEeccCCCCcccCc-eEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCeE
Confidence 599999874444555666 678999999999999833321 22445444444 4544443111 0111 2223377
Q ss_pred EEEecCC----CCcceeeeccCCHHHHHHHHHHHHHH
Q 006638 81 FTLYNSL----DHNEKLKLGARSPEEAAKWIRSLQEA 113 (637)
Q Consensus 81 ~~~yn~~----~~~~~~~~~~~~~eea~~W~~~~~~a 113 (637)
|+|--.- -....+-|=|.|..|-.||..++++.
T Consensus 82 f~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 82 FRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred EEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 7775432 23455668899999999999999986
No 107
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=78.36 E-value=51 Score=33.10 Aligned_cols=141 Identities=13% Similarity=0.083 Sum_probs=84.6
Q ss_pred ceEEEEEEecCCHHHHHHHHhcCCCCccccccccceeEEEEeecCceEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCC
Q 006638 202 PAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDG 281 (637)
Q Consensus 202 ~~~Ka~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~DG 281 (637)
.......+|+.|+++|+.+..|++. .+.|.+++.+.+|+ |++- -+++.. .|.. -.|-.......+..|
T Consensus 70 i~v~~~V~I~kPae~vy~~W~dLe~-lP~~Mkhl~SVkVl---ddkr--SrW~~~---ap~g---~~v~Wea~it~d~~~ 137 (217)
T COG5637 70 IEVEVQVTIDKPAEQVYAYWRDLEN-LPLWMKHLDSVKVL---DDKR--SRWKAN---APLG---LEVEWEAEITKDIPG 137 (217)
T ss_pred eEEEEEEEeCChHHHHHHHHHhhhh-hhHHHHhhceeecc---CCCc--cceeEc---CCCC---ceEEEeehhhccCCC
Confidence 3445566789999999999999996 99999998886665 5543 233322 1211 122211111222223
Q ss_pred eEEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCceEEEEEEEEeCCCccccc-ccc-chhhHHHHHHHHHHHHH
Q 006638 282 TYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYL-RPS-SARSITIRMLERVAALR 359 (637)
Q Consensus 282 syvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~VTyi~qvDpkGwip~~-~~~-~~~~i~~~ml~~va~LR 359 (637)
=+|.-.|++-... +..|.|| +.+..+. +|.|...+.-.|-||.-.- .+. |+...-.++-+-+...|
T Consensus 138 -e~I~W~Sl~Ga~v-~NsG~Vr---------F~~~pg~-~t~V~v~lsY~~Pgg~~~a~va~~fgeepeqqI~~DL~RFk 205 (217)
T COG5637 138 -ERIQWESLPGARV-ENSGAVR---------FYDAPGD-STEVKVTLSYRPPGGLLGAVVAKLFGEEPEQQIQDDLERFK 205 (217)
T ss_pred -cEEeeecCCCCcC-CCCccEE---------eeeCCCC-ceEEEEEEEecCCccHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 3677888854333 4567777 5555433 5788777777777776432 222 33333345557778888
Q ss_pred HHHHhhc
Q 006638 360 ELFQAKA 366 (637)
Q Consensus 360 e~~~~~~ 366 (637)
+++...+
T Consensus 206 ~~~e~~q 212 (217)
T COG5637 206 EYQENGQ 212 (217)
T ss_pred HHHHccC
Confidence 8887643
No 108
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=77.14 E-value=6.9 Score=35.91 Aligned_cols=100 Identities=20% Similarity=0.269 Sum_probs=62.0
Q ss_pred eeEEEE-EeecccccccccceeeEeecceeeeeecCCCCCC--Cccceeeee-cCceEEecCC--cceeeCceEEEEEEe
Q 006638 11 EGWLYA-ILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEK--EEPVKSAMI-HSCIRVTDNG--RESINRKVLFVFTLY 84 (637)
Q Consensus 11 egW~~~-~~~~~lg~~~~~~Ryfvl~~~~~~~yKr~P~~~~--~~pi~~~ii-~~~~rVed~G--r~~~~~~~~~v~~~y 84 (637)
=|||-- +.-+..+.+--+.||++|.|+.+-.|+.-|.+.. .+|.++--+ +--+||-..| +.. +.+.=++|.+-
T Consensus 2 mGW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~-~~~~~~~F~ir 80 (108)
T cd01258 2 IGWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRL-NDQRDNCFLIR 80 (108)
T ss_pred ceecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCc-CCCCceEEEEE
Confidence 378755 3333444455589999999999999999998753 355544332 2234443211 111 12222566665
Q ss_pred cCCCCcceeeeccCCHHHHHHHHHHHHH
Q 006638 85 NSLDHNEKLKLGARSPEEAAKWIRSLQE 112 (637)
Q Consensus 85 n~~~~~~~~~~~~~~~eea~~W~~~~~~ 112 (637)
=... =..-.|...+..|-+.|.+||++
T Consensus 81 tg~~-vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 81 TGTQ-VENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred cCCc-eeeEEEEecCHHHHHHHHHHHhc
Confidence 4433 12233889999999999999975
No 109
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=74.62 E-value=7.5 Score=43.71 Aligned_cols=93 Identities=22% Similarity=0.337 Sum_probs=59.0
Q ss_pred ceeeEEEEEeecccccccccceeeEeecceeeeee-cCCCCCCCcc--ceeeeecCceEEe---cCCcceeeCceEEEEE
Q 006638 9 KIEGWLYAILVNRIGMQISRKRYFILLDNCLNGYK-MVPSSEKEEP--VKSAMIHSCIRVT---DNGRESINRKVLFVFT 82 (637)
Q Consensus 9 ~~egW~~~~~~~~lg~~~~~~Ryfvl~~~~~~~yK-r~P~~~~~~p--i~~~ii~~~~rVe---d~Gr~~~~~~~~~v~~ 82 (637)
.++||++.++... . -..|||.|.+..+.+.. .+|...+..| +...-|...+=|- ...+ =++|.
T Consensus 378 ~~~G~l~k~~~~~---~-wk~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~pv~~~~~~~~-------~~~~~ 446 (478)
T PTZ00267 378 THGGYLYKYSSDM---R-WKKRYFYIGNGQLRISLSENPENDGVAPKSVNLETVNDVFPVPEVYSQKH-------PNQLV 446 (478)
T ss_pred ccceEEeccCCCc---c-hhhheEEecCCceEEEeccccccCCCCCccccHHHhcccccccHHhcCCC-------CceEE
Confidence 5899999977644 3 48899999988877754 5665543333 2222244444331 1211 23455
Q ss_pred EecCCCCcceeeeccCCHHHHHHHHHHHHHHH
Q 006638 83 LYNSLDHNEKLKLGARSPEEAAKWIRSLQEAA 114 (637)
Q Consensus 83 ~yn~~~~~~~~~~~~~~~eea~~W~~~~~~a~ 114 (637)
+..+.++ ++=+.|.|.+|...||++|+.|+
T Consensus 447 i~~~~~~--~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 447 LWFNNGQ--KIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred EEecCCc--EEEEecCChHHHHHHHHHHHHHh
Confidence 5444443 55566799999999999999985
No 110
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=74.20 E-value=5.4 Score=36.46 Aligned_cols=95 Identities=22% Similarity=0.376 Sum_probs=58.4
Q ss_pred ceeeEEEEEeecccccccccceeeEeecce-----eeeeecCCCCCCCccceeeeecCceEEe--c-------CCcceee
Q 006638 9 KIEGWLYAILVNRIGMQISRKRYFILLDNC-----LNGYKMVPSSEKEEPVKSAMIHSCIRVT--D-------NGRESIN 74 (637)
Q Consensus 9 ~~egW~~~~~~~~lg~~~~~~Ryfvl~~~~-----~~~yKr~P~~~~~~pi~~~ii~~~~rVe--d-------~Gr~~~~ 74 (637)
.++|||+..|.+..= .+ .+|||||.+-+ +..|+.+-+++.+ ...+|+.+ |. | -|.+--
T Consensus 3 k~sGyL~k~Gg~~~K-kW-KKRwFvL~qvsQYtfamcsy~ekks~P~e----~~qldGyT-vDy~~~~~~~~~~~~~~~- 74 (117)
T cd01234 3 KHCGYLYAIGKNVWK-KW-KKRFFVLVQVSQYTFAMCSYREKKAEPTE----FIQLDGYT-VDYMPESDPDPNSELSLQ- 74 (117)
T ss_pred ceeEEEEeccchhhh-hh-heeEEEEEchhHHHHHHHhhhhhcCCchh----heeecceE-EeccCCCCCCcccccccc-
Confidence 489999998775543 33 79999999754 2345533333211 12223311 11 1 112222
Q ss_pred CceEEEEEEecCCCCcceeeeccCCHHHHHHHHHHHHHHHh
Q 006638 75 RKVLFVFTLYNSLDHNEKLKLGARSPEEAAKWIRSLQEAAV 115 (637)
Q Consensus 75 ~~~~~v~~~yn~~~~~~~~~~~~~~~eea~~W~~~~~~a~~ 115 (637)
|..+| +|.-.+.+.+.+|+....|.--|+.|+=.|--
T Consensus 75 gg~~f----f~avkegd~~~fa~~de~~r~lwvqa~yratg 111 (117)
T cd01234 75 GGRHF----FNAVKEGDELKFATDDENERHLWVQAMYRATG 111 (117)
T ss_pred cchhh----hheeccCcEEEEeccchHHHHHHHHHHHHHcC
Confidence 33332 45667788999999999999999999988843
No 111
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=68.32 E-value=17 Score=33.47 Aligned_cols=79 Identities=19% Similarity=0.355 Sum_probs=56.6
Q ss_pred cccccceeeEeecceeeeeecCCCC-----CCCccceeeeecCceEEecCCcceeeCceEEEEEEecCCCCcceeeeccC
Q 006638 24 MQISRKRYFILLDNCLNGYKMVPSS-----EKEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNSLDHNEKLKLGAR 98 (637)
Q Consensus 24 ~~~~~~Ryfvl~~~~~~~yKr~P~~-----~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~~~~~~~~~~~~ 98 (637)
-+=-+-|||||=...|-|....|.. .|..|++.+.|..=...+ + + -+.|.|--+. -+++.+-|.
T Consensus 25 ~qe~~eRyLvLFp~~LlilS~s~r~sGf~yqGkLPL~~i~v~~lEd~e--~----~---~~aFeI~G~l--i~~i~v~C~ 93 (111)
T cd01225 25 GEEKRERYLVLFPNVLLMLSASPRMSGFIYQGKLPLTGIIVTRLEDTE--A----L---KNAFEISGPL--IERIVVVCN 93 (111)
T ss_pred ccccceeEEEEcCceEEEEEcCCCccceEEeeeecccccEEechHhcc--C----c---cceEEEeccC--cCcEEEEeC
Confidence 3345899999999999999998855 457888888776421111 1 2 3445554333 356778899
Q ss_pred CHHHHHHHHHHHHHH
Q 006638 99 SPEEAAKWIRSLQEA 113 (637)
Q Consensus 99 ~~eea~~W~~~~~~a 113 (637)
+.+|..+|++-|+.-
T Consensus 94 ~~~e~~~Wl~hL~~~ 108 (111)
T cd01225 94 NPQDAQEWVELLNAN 108 (111)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999998864
No 112
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=68.04 E-value=6.3 Score=46.36 Aligned_cols=98 Identities=23% Similarity=0.326 Sum_probs=67.4
Q ss_pred ceeeEEEE--EeecccccccccceeeEeecceeeeeecCCCCCCCccceeeeecCceEEecCCcceeeCceEEEEEEecC
Q 006638 9 KIEGWLYA--ILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNS 86 (637)
Q Consensus 9 ~~egW~~~--~~~~~lg~~~~~~Ryfvl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~ 86 (637)
.-||=|++ =|+-++|..++-+|||-|-+..|.|=| .|+. .|+-+..+-+=--||..--+.+.++.+|- -||+.
T Consensus 566 ~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~K-sp~~---q~~~~Ipl~nI~avEklee~sF~~knv~q-VV~~d 640 (800)
T KOG2059|consen 566 LKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAK-SPGK---QPIYTIPLSNIRAVEKLEEKSFKMKNVFQ-VVHTD 640 (800)
T ss_pred ecccceEeccccccchhhhhhhheEEEeccceeEEec-CCcc---CcccceeHHHHHHHHHhhhhccCCCceEE-EEecC
Confidence 46788888 678889988889999999999998777 3433 33333333332224433344555554432 24444
Q ss_pred CCCcceeeeccCCHHHHHHHHHHHHHHHh
Q 006638 87 LDHNEKLKLGARSPEEAAKWIRSLQEAAV 115 (637)
Q Consensus 87 ~~~~~~~~~~~~~~eea~~W~~~~~~a~~ 115 (637)
+++-+-|.+.-||..|..+++.+..
T Consensus 641 ----rtly~Q~~n~vEandWldaL~kvs~ 665 (800)
T KOG2059|consen 641 ----RTLYVQAKNCVEANDWLDALRKVSC 665 (800)
T ss_pred ----cceeEecCCchHHHHHHHHHHHHhc
Confidence 4777999999999999999998854
No 113
>PLN02866 phospholipase D
Probab=66.80 E-value=20 Score=44.34 Aligned_cols=80 Identities=18% Similarity=0.352 Sum_probs=55.1
Q ss_pred cceeeEeecceeeeeecCCCCCCCccceeeeecC----------ceEEecCCcceeeCceEEEEEEecCCCCcceeeecc
Q 006638 28 RKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHS----------CIRVTDNGRESINRKVLFVFTLYNSLDHNEKLKLGA 97 (637)
Q Consensus 28 ~~Ryfvl~~~~~~~yKr~P~~~~~~pi~~~ii~~----------~~rVed~Gr~~~~~~~~~v~~~yn~~~~~~~~~~~~ 97 (637)
.+|||||+..+|.|.+ +|.+. .|..=.++|- .+.+.....++ +..=|.|+|-| -+++++|.|
T Consensus 219 ~k~w~v~k~~~l~~~~-~p~~~--~~~~v~lfD~~~~~~~~~~~~~~~~~~~k~~--~~~~~~~~i~~---~~r~l~l~~ 290 (1068)
T PLN02866 219 QKVWAVLKPGFLALLE-DPFDA--KPLDIIVFDVLPASNGNGEGQISLAKEIKER--NPLRFGFKVTC---GNRSIRLRT 290 (1068)
T ss_pred heeEEEEeccEEEEEe-cCCCC--ceeEEEEEecccccccCCCcceeeccccccc--CCCcceEEEec---CceEEEEEE
Confidence 5699999999997765 56553 4555555562 23333222222 23344666644 367799999
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 006638 98 RSPEEAAKWIRSLQEAAV 115 (637)
Q Consensus 98 ~~~eea~~W~~~~~~a~~ 115 (637)
.|..+++.|+.+++.|..
T Consensus 291 ~s~~~~~~w~~ai~~~~~ 308 (1068)
T PLN02866 291 KSSAKVKDWVAAINDAGL 308 (1068)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 999999999999999975
No 114
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=59.42 E-value=70 Score=29.54 Aligned_cols=90 Identities=19% Similarity=0.283 Sum_probs=58.0
Q ss_pred cccccceeeEeecceeeeee-cCCCCCCCccceeeeecCceEEecCCcceeeCceEEEEEEecCCC--CcceeeeccCCH
Q 006638 24 MQISRKRYFILLDNCLNGYK-MVPSSEKEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNSLD--HNEKLKLGARSP 100 (637)
Q Consensus 24 ~~~~~~Ryfvl~~~~~~~yK-r~P~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~~--~~~~~~~~~~~~ 100 (637)
+.-++.|.++|=...|=+=| +.++.....|. -+--+.+.+.+.|.+-+.++.=.-|.|..+.. ..+.+.+-|.|+
T Consensus 21 ~~K~~eR~vFLFe~~lvfsk~~~~~~~~~~~~--Y~yK~~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA~s~ 98 (114)
T cd01232 21 IQKGRERRVFLFEQSIIFAKEVKKKKQFGNPK--YIYKSKLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKANSQ 98 (114)
T ss_pred cCCCceeEEEEeeceEEEEEEeccCCCCCcee--EEEecceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEECCCH
Confidence 56678899998888886666 33322111221 11223444555555555544555677766654 357888999999
Q ss_pred HHHHHHHHHHHHHHh
Q 006638 101 EEAAKWIRSLQEAAV 115 (637)
Q Consensus 101 eea~~W~~~~~~a~~ 115 (637)
|+-..|+..++++.+
T Consensus 99 e~K~~W~~~I~~il~ 113 (114)
T cd01232 99 ETKQEWVKKIREILQ 113 (114)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999865
No 115
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=54.69 E-value=27 Score=40.51 Aligned_cols=93 Identities=26% Similarity=0.380 Sum_probs=61.8
Q ss_pred ceeeEEEEEeecccccccccceeeEeecceeeeee---cCCCCCCCccceeeeecC-ceEE-e-cCCcceeeCceEEEEE
Q 006638 9 KIEGWLYAILVNRIGMQISRKRYFILLDNCLNGYK---MVPSSEKEEPVKSAMIHS-CIRV-T-DNGRESINRKVLFVFT 82 (637)
Q Consensus 9 ~~egW~~~~~~~~lg~~~~~~Ryfvl~~~~~~~yK---r~P~~~~~~pi~~~ii~~-~~rV-e-d~Gr~~~~~~~~~v~~ 82 (637)
.-||=++.|.++ ..-+..||++|=+..+-|=| +.|-+.-+ -+++++- |+-| + +++- -++.|++=
T Consensus 273 iKEG~l~Kis~k---~~~~qeRylfLFNd~~lyc~~r~~~~~~k~~---~r~~~s~~~~~v~~~~~~~---~~~tF~~~- 342 (623)
T KOG4424|consen 273 IKEGQLQKISAK---NGTTQERYLFLFNDILLYCKPRKRLPGSKYE---VRARCSISHMQVQEDDNEE---LPHTFILT- 342 (623)
T ss_pred hhccceeeeecc---CCCcceeEEEEehhHHHhhhhhhhcccceec---cceeeccCcchhccccccc---CCceEEEe-
Confidence 578999999888 56678999999987775555 33333211 1222211 2222 2 2331 12344442
Q ss_pred EecCCCCcceeeeccCCHHHHHHHHHHHHHHHhh
Q 006638 83 LYNSLDHNEKLKLGARSPEEAAKWIRSLQEAAVK 116 (637)
Q Consensus 83 ~yn~~~~~~~~~~~~~~~eea~~W~~~~~~a~~~ 116 (637)
++.+-++|.+.|.+|...|+.+++.||++
T Consensus 343 -----G~~r~vel~a~t~~ek~eWv~~I~~~Id~ 371 (623)
T KOG4424|consen 343 -----GKKRGVELQARTEQEKKEWVQAIQDAIDK 371 (623)
T ss_pred -----cccceEEeecCchhhHHHHHHHHHHHHHH
Confidence 37888999999999999999999999994
No 116
>TIGR01599 PYST-A Plasmodium yoelii subtelomeric family PYST-A. A single high-scoring gene was identified in the complete genome of P. falciparum as well as a single gene from P. chaboudi from GenBank which were included in the seed. There are no obvious homologs to these genes in any non-Plasmodium organism. These observations suggest an expansion of this family in yoelii from a common Plasmodium ancestor gene (present in a single copy in falciparum).
Probab=54.36 E-value=2.6e+02 Score=28.67 Aligned_cols=119 Identities=14% Similarity=0.146 Sum_probs=78.4
Q ss_pred ceEEEEEEecC--CHHHHHHHHhcCCCCccccccccceeEEEEeecCceEEEEEEeecCCCCCCCCCceEEE-EEEEEEc
Q 006638 202 PAIMAVGVVDG--TSEAIFQTLMSLGSSRSEWDFCFYRGCVVEHLDGHSDVVHKLLYSDWLPWGMQRRDLLV-RRYWRRE 278 (637)
Q Consensus 202 ~~~Ka~gvV~a--spe~VfelL~D~~~~R~eWD~~~~~~~vVE~ID~~tdIvY~~~~~~~~P~pvs~RDFV~-lR~wrr~ 278 (637)
..-|....|.- .-.+|...|+|.+. -...|..+..++++...+++.-++.++++.. ..+++-+.+ |..-.+.
T Consensus 59 dI~K~~~~I~~pnkYneIIN~LWdpn~-~~~fn~~~ikgki~RvYnpNLvmiqqry~~~----~~~~~~YfyaLa~Kv~i 133 (208)
T TIGR01599 59 IIGKIHLTIQDPNKYDAIIKTLWDFND-NKKFGRKFIKGKVVRVYSPNLIMIQQRYKDA----SGSPNKYFYALATKVKV 133 (208)
T ss_pred EEEEEEEEecCchhHHHHHHHHhcccc-ccCCCchheeeeEEEEeCCCeEEEEeecCCC----CCCcceEEeEeeeeeec
Confidence 45666777754 47899999999985 6789999999999999999999999876532 233444444 4443333
Q ss_pred CCCeEEEEEeecCCCCCCC--CCC--------------------------eEEEEEeeeeEEEEeCCCCCceEEEEE
Q 006638 279 DDGTYVILYHSVNHKKCPK--QKG--------------------------YVRACLKSGGFVITPSNQGKQSIVKHM 327 (637)
Q Consensus 279 ~DGsyvI~~~SV~Hp~~Pp--~~G--------------------------yVRaei~~gG~vI~Pl~~~~~~~VTyi 327 (637)
..++-+|++.|..--..-+ ++. .-...+..+||+|..-++ ...|||+
T Consensus 134 Sed~TiIv~~S~~ind~n~~~~~~~~n~iv~san~f~~~idse~dir~g~l~k~fvNl~G~~IkK~~d--~v~iTyi 208 (208)
T TIGR01599 134 SEDTTIIACTSANINDHNKVDKKNFKNKIIESANSFKTDIDSEEDIRNGELKKMFVNLSGFIIKKKDD--NIDITYV 208 (208)
T ss_pred CCCcEEEEEeccccccCCccccccccceeeeecccccCccCHHHHHHhhhhhheEEeeEEEEEEecCC--cEEEEEC
Confidence 3445677777765322211 111 223356678999988654 4677774
No 117
>PLN02647 acyl-CoA thioesterase
Probab=50.71 E-value=28 Score=39.42 Aligned_cols=74 Identities=14% Similarity=0.196 Sum_probs=50.8
Q ss_pred ceeeeee-cCCCCCCCccceeeeecC-----------ceE----Ee--cCCcceeeCceEEEEEEecC--CCCcceee-e
Q 006638 37 NCLNGYK-MVPSSEKEEPVKSAMIHS-----------CIR----VT--DNGRESINRKVLFVFTLYNS--LDHNEKLK-L 95 (637)
Q Consensus 37 ~~~~~yK-r~P~~~~~~pi~~~ii~~-----------~~r----Ve--d~Gr~~~~~~~~~v~~~yn~--~~~~~~~~-~ 95 (637)
..++-.. ..|...|+....++-|.- .++ |+ +.|-+.+.+..+|+|.+-+. .+++.+++ +
T Consensus 336 ~svd~v~F~~PV~vGdil~l~A~V~yt~~~s~g~~~i~veV~v~v~~~~~~~~~~~n~~~fTfva~d~~~~g~p~~Vp~V 415 (437)
T PLN02647 336 LEVDHVDFLRPVDVGDFLRFKSCVLYTELENSEQPLINVEVVAHVTRPELRSSEVSNTFYFTFTVRPEAAMKNGFKIRNV 415 (437)
T ss_pred EEecceEecCccccCcEEEEEEEEEEEeEEecCceEEEEEEEEEEEcCCCCcceEEEEEEEEEEEeccccCCCCccCCee
Confidence 4455555 669998877765554421 122 32 34555678899999999876 56777786 9
Q ss_pred ccCCHHHHHHHHHHH
Q 006638 96 GARSPEEAAKWIRSL 110 (637)
Q Consensus 96 ~~~~~eea~~W~~~~ 110 (637)
-+.|.||++++-+.+
T Consensus 416 ~P~T~eE~~~~~e~~ 430 (437)
T PLN02647 416 VPATEEEARRILERM 430 (437)
T ss_pred ecCCHHHHHHHHHhc
Confidence 999999999955443
No 118
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=50.55 E-value=17 Score=35.45 Aligned_cols=96 Identities=15% Similarity=0.182 Sum_probs=66.6
Q ss_pred ceeeEEEE-------EeecccccccccceeeEeecceeeeee-cCCCCCCCccceeeeecC------ceEEe------cC
Q 006638 9 KIEGWLYA-------ILVNRIGMQISRKRYFILLDNCLNGYK-MVPSSEKEEPVKSAMIHS------CIRVT------DN 68 (637)
Q Consensus 9 ~~egW~~~-------~~~~~lg~~~~~~Ryfvl~~~~~~~yK-r~P~~~~~~pi~~~ii~~------~~rVe------d~ 68 (637)
.+-|||-. |.+.++++.++-+ -+++--- .+|...|+....-|-|.. .+.|| ..
T Consensus 31 ifGG~lm~~mD~~a~i~A~~~a~~~vVT-------asvd~v~F~~Pv~vGd~v~~~a~v~~~GrTSm~V~Vev~~~~~~~ 103 (157)
T COG1607 31 IFGGWLLSWMDLAAAIAASRHAGGRVVT-------ASVDSVDFKKPVRVGDIVCLYARVVYTGRTSMEVGVEVWAEDIRS 103 (157)
T ss_pred cccHHHHHHHHHHHHHHHHHHhCCeEEE-------EEeceEEEccccccCcEEEEEEEEeecCcccEEEEEEEEEecccC
Confidence 35666655 6777777776666 3444333 579888876666665533 23333 24
Q ss_pred CcceeeCceEEEEEEecCCCCcceee-eccCCHHHHHHHHHHHHHHHh
Q 006638 69 GRESINRKVLFVFTLYNSLDHNEKLK-LGARSPEEAAKWIRSLQEAAV 115 (637)
Q Consensus 69 Gr~~~~~~~~~v~~~yn~~~~~~~~~-~~~~~~eea~~W~~~~~~a~~ 115 (637)
|-..+-.+++|+|-..|..+++..++ +.+.+.+|.++ ++.|.+
T Consensus 104 ~~~~~~t~~~ft~VAvd~~gkP~~vp~~~~~~~~e~~~----~~~A~~ 147 (157)
T COG1607 104 GERRLATSAYFTFVAVDEDGKPTPVPREEPETEEEKRR----YAAAGA 147 (157)
T ss_pred CcceEeeeEEEEEEEECCCCCcccCCccCCccHHHHhh----hhhhHH
Confidence 44556678999999999999999998 88999988888 665544
No 119
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=45.65 E-value=1.6e+02 Score=28.12 Aligned_cols=91 Identities=15% Similarity=0.203 Sum_probs=63.3
Q ss_pred cccccceeeEeecceeeeeecC--CCCCCCccceeeeecCceEEecCCcceeeCceEEEEEEecCCCCcceeeeccCCHH
Q 006638 24 MQISRKRYFILLDNCLNGYKMV--PSSEKEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNSLDHNEKLKLGARSPE 101 (637)
Q Consensus 24 ~~~~~~Ryfvl~~~~~~~yKr~--P~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~~~~~~~~~~~~~~e 101 (637)
+.-++-|+++|=.+.|=.=|+. |......|. =+-=+++.+.+.|..-+.++.-.-|.|..+.. ...+.+-|.|+|
T Consensus 26 r~K~~eRhVFLFE~~viF~K~~~~~~~~~~~p~--Y~yK~~ikls~lglte~v~gd~~kFeiw~~~~-~~~yilqA~t~e 102 (133)
T cd01227 26 RFKPMQRHIFLHEKAVLFCKKREENGEGEKAPS--YSFKQSLKMTAVGITENVKGDTKKFEIWYNAR-EEVYILQAPTPE 102 (133)
T ss_pred ccCCceeEEEEecceEEEEEEeccCCCCCccee--EEEeeeEEeecccccccCCCCccEEEEEeCCC-CcEEEEEcCCHH
Confidence 4557789999999988666633 222112332 13344555666666666666666677777664 578889999999
Q ss_pred HHHHHHHHHHHHHhhc
Q 006638 102 EAAKWIRSLQEAAVKE 117 (637)
Q Consensus 102 ea~~W~~~~~~a~~~~ 117 (637)
.-..|+..+.+...+|
T Consensus 103 ~K~~Wv~~I~~iL~~Q 118 (133)
T cd01227 103 IKAAWVNEIRKVLTSQ 118 (133)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988754
No 120
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=45.31 E-value=73 Score=29.02 Aligned_cols=85 Identities=22% Similarity=0.364 Sum_probs=48.9
Q ss_pred ceeeEEEEEeecccccccccceeeEeecc-eeeeeecCCCCCCCccceeeee--cCceEEecCCcceeeCceEEEEEEec
Q 006638 9 KIEGWLYAILVNRIGMQISRKRYFILLDN-CLNGYKMVPSSEKEEPVKSAMI--HSCIRVTDNGRESINRKVLFVFTLYN 85 (637)
Q Consensus 9 ~~egW~~~~~~~~lg~~~~~~Ryfvl~~~-~~~~yKr~P~~~~~~pi~~~ii--~~~~rVed~Gr~~~~~~~~~v~~~yn 85 (637)
.++|-+..- + |. +.++|-|+|.+. .|-|+. |... +.+|-| .+.++|+-. +.+.|+|-+
T Consensus 14 l~~g~v~K~--k--gl-~~kkR~liLTd~PrL~Yvd--p~~~----~~KGeI~~~~~l~v~~k-----~~~~F~I~t--- 74 (104)
T PF14593_consen 14 LKQGYVKKR--K--GL-FAKKRQLILTDGPRLFYVD--PKKM----VLKGEIPWSKELSVEVK-----SFKTFFIHT--- 74 (104)
T ss_dssp EEEEEEEEE--E--TT-EEEEEEEEEETTTEEEEEE--TTTT----EEEEEE--STT-EEEEC-----SSSEEEEEE---
T ss_pred EEEEEEEEe--e--ce-EEEEEEEEEccCCEEEEEE--CCCC----eECcEEecCCceEEEEc-----cCCEEEEEC---
Confidence 577887772 2 22 379999999988 665554 5431 334444 567888832 223333321
Q ss_pred CCCCcceeeeccCCHHHHHHHHHHHHHHHhh
Q 006638 86 SLDHNEKLKLGARSPEEAAKWIRSLQEAAVK 116 (637)
Q Consensus 86 ~~~~~~~~~~~~~~~eea~~W~~~~~~a~~~ 116 (637)
+ .++.-|-. ....|..|.++++++..+
T Consensus 75 p---~RtY~l~d-~~~~A~~W~~~I~~~~~~ 101 (104)
T PF14593_consen 75 P---KRTYYLED-PEGNAQQWVEAIEEVKKQ 101 (104)
T ss_dssp T---TEEEEEE--TTS-HHHHHHHHHHHHHH
T ss_pred C---CcEEEEEC-CCCCHHHHHHHHHHHHHH
Confidence 2 23333333 445699999999999763
No 121
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=42.65 E-value=12 Score=43.20 Aligned_cols=93 Identities=22% Similarity=0.274 Sum_probs=62.0
Q ss_pred EeecccccccccceeeEeecceeeeee-cCCCCCCCccceeeeecCceE-EecCCcceeeCceEEEEEEecCCCCcceee
Q 006638 17 ILVNRIGMQISRKRYFILLDNCLNGYK-MVPSSEKEEPVKSAMIHSCIR-VTDNGRESINRKVLFVFTLYNSLDHNEKLK 94 (637)
Q Consensus 17 ~~~~~lg~~~~~~Ryfvl~~~~~~~yK-r~P~~~~~~pi~~~ii~~~~r-Ved~Gr~~~~~~~~~v~~~yn~~~~~~~~~ 94 (637)
=|+=|+=+.| +.|||.|.|-.|.|-| .-|.+-++-||-=--|- .+| |...-+++-..++|=||+.= +++-
T Consensus 745 KGrWRf~kRW-~TrYFTLSgA~L~~~kg~s~~dS~~~~IDl~~IR-SVk~v~~kr~~rslpKAFEIFTAD------~T~I 816 (851)
T KOG3723|consen 745 KGRWRFIKRW-KTRYFTLSGAQLLFQKGKSKDDSDDCPIDLSKIR-SVKAVAKKRRDRSLPKAFEIFTAD------KTYI 816 (851)
T ss_pred ccchhhhhhh-ccceEEecchhhhcccCCCCCCCCCCCccHHHhh-hHHHHHhhhhhcccchhhheeecC------ceEE
Confidence 4555666677 8899999999998877 44444333332111111 112 22223345678899999863 3477
Q ss_pred eccCCHHHHHHHHHHHHHHHhhc
Q 006638 95 LGARSPEEAAKWIRSLQEAAVKE 117 (637)
Q Consensus 95 ~~~~~~eea~~W~~~~~~a~~~~ 117 (637)
|.|.+.--|..|.+.+.=|++++
T Consensus 817 LKaKDeKNAEEWlqCL~IavAHa 839 (851)
T KOG3723|consen 817 LKAKDEKNAEEWLQCLNIAVAHA 839 (851)
T ss_pred eecccccCHHHHHHHHHHHHHHH
Confidence 88999999999999999998854
No 122
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=41.18 E-value=2.3e+02 Score=26.06 Aligned_cols=107 Identities=16% Similarity=0.147 Sum_probs=62.6
Q ss_pred EEEEEEecCCHHHHHHHHhcCCCCccccccccceeEEE--EeecCceEEEEEEeecCCCCCCCCCceEEEEEEEEEcCCC
Q 006638 204 IMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCFYRGCVV--EHLDGHSDVVHKLLYSDWLPWGMQRRDLLVRRYWRREDDG 281 (637)
Q Consensus 204 ~Ka~gvV~aspe~VfelL~D~~~~R~eWD~~~~~~~vV--E~ID~~tdIvY~~~~~~~~P~pvs~RDFV~lR~wrr~~DG 281 (637)
||....+++|++++|+.|.+.- .-|-.-...+.+ .+|.+ .-|... .+.+--+.+.-..-..+.
T Consensus 1 MkI~~~l~v~a~~ff~~l~~s~----~~DI~~~tgk~~~~~~L~G---~~Y~K~--------~~~~~~~~v~It~~~~~~ 65 (120)
T PF11687_consen 1 MKISKTLNVSAEEFFDYLIDSL----LYDIKQATGKKLPVKQLKG---FSYQKK--------FKNKREAKVKITEYEPNK 65 (120)
T ss_pred CeEEEEecCCHHHHHHHHHHHH----HHHHHHHcCCCCChhhcCC---cEEEEE--------cCCCCEEEEEEEEEcCCC
Confidence 5778889999999999998732 222222222222 23322 223221 112223333322223455
Q ss_pred eEEEEEeecCCCCCCCCCCeEEEEEeeeeEEEEeCCCCCceEEEEEEEEeCCCccccc
Q 006638 282 TYVILYHSVNHKKCPKQKGYVRACLKSGGFVITPSNQGKQSIVKHMLAVDWKYWKLYL 339 (637)
Q Consensus 282 syvI~~~SV~Hp~~Pp~~GyVRaei~~gG~vI~Pl~~~~~~~VTyi~qvDpkGwip~~ 339 (637)
.|.+.+.|-. | ...-.|.|+|++++ .|.|+|-=.....|+...+
T Consensus 66 ~Y~~~~~s~~--------~-----~~~i~Y~i~~~~~~-~~~v~y~E~~~~~~~~~~~ 109 (120)
T PF11687_consen 66 RYAATFSSSR--------G-----TFTISYEIEPLDDG-SIEVTYEEEYESKGFFQKL 109 (120)
T ss_pred EEEEEEEecC--------C-----CEEEEEEEEECCCC-cEEEEEEEEEccCCHHHHH
Confidence 6777766542 1 23457999999877 7999999999998876543
No 123
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=38.94 E-value=64 Score=37.69 Aligned_cols=97 Identities=19% Similarity=0.295 Sum_probs=66.0
Q ss_pred ceeeEEEEEeecccccccccceeeEe--ecceeeeee--cCCCCCCCccceeeeecCceEEecCCcceeeCceEEEEEEe
Q 006638 9 KIEGWLYAILVNRIGMQISRKRYFIL--LDNCLNGYK--MVPSSEKEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLY 84 (637)
Q Consensus 9 ~~egW~~~~~~~~lg~~~~~~Ryfvl--~~~~~~~yK--r~P~~~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~y 84 (637)
.+||.+|.-..++||.+| .+-|-+- +.|.+.|-- .+|... .-|.-+.+.-.|.| |++-.=..=|+|.|-
T Consensus 266 t~eGYlY~QEK~~~g~sW-vKyYC~Y~retk~~TMvp~~qk~g~k-~g~~~~~~lKsC~R-----RktdSIdKRFCFDve 338 (812)
T KOG1451|consen 266 TKEGYLYMQEKSKIGKSW-VKYYCVYSRETKIFTMVPANQKTGTK-MGQTATFKLKSCSR-----RKTDSIDKRFCFDVE 338 (812)
T ss_pred ccceeeeehhhhhccchh-hhheeEeecccceEEEeecccCCCCc-CCCcceEEehhhcc-----Ccccccccceeeeee
Confidence 589999999999999988 5556554 355666644 233332 33545555556655 222222234666664
Q ss_pred cCCCCcceeeeccCCHHHHHHHHHHHHHH
Q 006638 85 NSLDHNEKLKLGARSPEEAAKWIRSLQEA 113 (637)
Q Consensus 85 n~~~~~~~~~~~~~~~eea~~W~~~~~~a 113 (637)
..+.+..++|-|-+.++.+-||+|..++
T Consensus 339 -~~erpgviTmQALSE~drrlWmeAMDG~ 366 (812)
T KOG1451|consen 339 -VEERPGVITMQALSEKDRRLWMEAMDGA 366 (812)
T ss_pred -ecccCCeeehHhhhhhHHHHHHHHhcCC
Confidence 3456889999999999999999999888
No 124
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=37.36 E-value=31 Score=30.90 Aligned_cols=30 Identities=17% Similarity=0.135 Sum_probs=25.7
Q ss_pred EEEEEEecCCHHHHHHHHhcCCCCccccccc
Q 006638 204 IMAVGVVDGTSEAIFQTLMSLGSSRSEWDFC 234 (637)
Q Consensus 204 ~Ka~gvV~aspe~VfelL~D~~~~R~eWD~~ 234 (637)
+....+|++||+.||+.|.|.+. ..+|...
T Consensus 2 ~~~~~~i~ap~e~Vw~~~td~~~-~~~W~~~ 31 (136)
T cd08893 2 FVYVTYIRATPEKVWQALTDPEF-TRQYWGG 31 (136)
T ss_pred eEEEEEecCCHHHHHHHHcCchh-hhheecc
Confidence 45678899999999999999985 8899765
No 125
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=35.10 E-value=3.6e+02 Score=25.54 Aligned_cols=32 Identities=16% Similarity=0.342 Sum_probs=29.0
Q ss_pred CceEEEEEEecCCHHHHHHHHhcCCCCcccccc
Q 006638 201 HPAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDF 233 (637)
Q Consensus 201 ~~~~Ka~gvV~aspe~VfelL~D~~~~R~eWD~ 233 (637)
...++.+.+|++|++.||+.|.|.+. +.+|-.
T Consensus 7 ~~~~~~er~i~aP~e~Vf~A~Tdpe~-l~~W~~ 38 (149)
T COG3832 7 DRTLEIERLIDAPPEKVFEALTDPEL-LARWFM 38 (149)
T ss_pred CceEEEEEeecCCHHHHHHHhcCHHH-HHhhcC
Confidence 46899999999999999999999985 999977
No 126
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=32.62 E-value=35 Score=32.39 Aligned_cols=32 Identities=9% Similarity=0.156 Sum_probs=29.0
Q ss_pred CceEEEEEEecCCHHHHHHHHhcCCCCcccccc
Q 006638 201 HPAIMAVGVVDGTSEAIFQTLMSLGSSRSEWDF 233 (637)
Q Consensus 201 ~~~~Ka~gvV~aspe~VfelL~D~~~~R~eWD~ 233 (637)
...+....+|++|++.||++|.|... ..+|..
T Consensus 10 ~~~i~~~~~i~Ap~e~Vw~altdp~~-~~~W~~ 41 (157)
T cd08899 10 GATLRFERLLPAPIEDVWAALTDPER-LARWFA 41 (157)
T ss_pred CeEEEEEEecCCCHHHHHHHHcCHHH-HHhhcC
Confidence 46789999999999999999999985 889988
No 127
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=30.66 E-value=55 Score=39.82 Aligned_cols=82 Identities=29% Similarity=0.409 Sum_probs=62.5
Q ss_pred ccccccceeeEeecceeeeeecCCCCC--CCccceeeeecCceEEecCCcceeeCceEEEEEEecCCCCcceeeeccCCH
Q 006638 23 GMQISRKRYFILLDNCLNGYKMVPSSE--KEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNSLDHNEKLKLGARSP 100 (637)
Q Consensus 23 g~~~~~~Ryfvl~~~~~~~yKr~P~~~--~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~~~~~~~~~~~~~~ 100 (637)
--.+.+-|||||.|.+|-.||..-+.. .+-|+.++++=-|++ ++..--..+-|++|-. -++.-+.|.+.
T Consensus 1047 ~g~~fqdryfilng~~l~lyke~KssKhek~wpl~s~k~Y~Gvk------kklKpPt~wg~T~i~e---khh~~l~cd~s 1117 (1186)
T KOG1117|consen 1047 SGNKFQDRYFILNGGCLFLYKEVKSSKHEKEWPLSSMKVYLGVK------KKLKPPTSWGFTAISE---KHHWYLCCDSS 1117 (1186)
T ss_pred cCCccceEEEEecCcEEEEeehhhccccccccccccceEEeccc------cccCCCCccceeeeee---cceEEEecCCc
Confidence 334668899999999999999555442 378999998865543 3344557888999932 34777999999
Q ss_pred HHHHHHHHHHHHH
Q 006638 101 EEAAKWIRSLQEA 113 (637)
Q Consensus 101 eea~~W~~~~~~a 113 (637)
.+-..|+..+=-|
T Consensus 1118 ~~~~ewfts~fka 1130 (1186)
T KOG1117|consen 1118 SEQTEWFTSIFKA 1130 (1186)
T ss_pred cccchhhhhhhhh
Confidence 9999999988666
No 128
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=30.32 E-value=47 Score=30.14 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=26.7
Q ss_pred EEEEEEecCCHHHHHHHHhcCCCCcccccccc
Q 006638 204 IMAVGVVDGTSEAIFQTLMSLGSSRSEWDFCF 235 (637)
Q Consensus 204 ~Ka~gvV~aspe~VfelL~D~~~~R~eWD~~~ 235 (637)
++...+|+||++.||+++.+.+. ..+|....
T Consensus 3 i~~~i~i~a~~e~Vw~~~td~~~-~~~W~~~~ 33 (145)
T cd08898 3 IERTILIDAPRERVWRALTDPEH-FGQWFGVK 33 (145)
T ss_pred eEEEEEecCCHHHHHHHhcChhh-hhhccccc
Confidence 56778999999999999999985 88998753
No 129
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=29.35 E-value=38 Score=41.75 Aligned_cols=93 Identities=22% Similarity=0.311 Sum_probs=60.7
Q ss_pred ceeeEEEEEeecccccccccceeeEeec--ceeeeeecCCCCCCCccceeeeecC--ceEEecCCcceeeCceEEEEEEe
Q 006638 9 KIEGWLYAILVNRIGMQISRKRYFILLD--NCLNGYKMVPSSEKEEPVKSAMIHS--CIRVTDNGRESINRKVLFVFTLY 84 (637)
Q Consensus 9 ~~egW~~~~~~~~lg~~~~~~Ryfvl~~--~~~~~yKr~P~~~~~~pi~~~ii~~--~~rVed~Gr~~~~~~~~~v~~~y 84 (637)
.+||.+|.=|+--- -+ ..|||||.. ..|.||..--. ..| +|+|+= ---|.-.|-+++-.+.||=+..-
T Consensus 1635 ~~eG~LyKrGA~lK--~W-k~RwFVLd~~khqlrYYd~~ed---t~p--kG~IdLaevesv~~~~~k~vdekgffdlktt 1706 (1732)
T KOG1090|consen 1635 IPEGYLYKRGAKLK--LW-KPRWFVLDPDKHQLRYYDDFED---TKP--KGCIDLAEVESVALIGPKTVDEKGFFDLKTT 1706 (1732)
T ss_pred Ccccchhhcchhhc--cc-ccceeEecCCccceeeeccccc---ccc--cchhhhhhhhhhcccCccccCccceeeeehh
Confidence 68999998655332 23 679999975 56888872211 233 344432 01112256677778888866432
Q ss_pred cCCCCcceeeeccCCHHHHHHHHHHHHHHH
Q 006638 85 NSLDHNEKLKLGARSPEEAAKWIRSLQEAA 114 (637)
Q Consensus 85 n~~~~~~~~~~~~~~~eea~~W~~~~~~a~ 114 (637)
.+..-+-|.|+-+|-+|++.++..+
T Consensus 1707 -----~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1707 -----NRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred -----hHHHHHHhccchHHHHHHHHHHHhh
Confidence 3344588999999999999999874
No 130
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=28.82 E-value=1.5e+02 Score=36.29 Aligned_cols=97 Identities=16% Similarity=0.358 Sum_probs=63.3
Q ss_pred eEEEE-------EeecccccccccceeeEeecceeeeeecCCCCCCCccceeeeecCceEEecCCccee-eCceEEEEEE
Q 006638 12 GWLYA-------ILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHSCIRVTDNGRESI-NRKVLFVFTL 83 (637)
Q Consensus 12 gW~~~-------~~~~~lg~~~~~~Ryfvl~~~~~~~yKr~P~~~~~~pi~~~ii~~~~rVed~Gr~~~-~~~~~~v~~~ 83 (637)
|.+|- +..-|=++.-+..+|-||.|-.|.||.-.-++ .|--..-|+.=+.+.-.--.++ +-+++|+|.+
T Consensus 496 ~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~S~---tP~~lI~~~Eivclav~~pd~~pn~~~~f~fE~ 572 (1186)
T KOG1117|consen 496 GFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEKST---TPNGLININEIVCLAVHPPDTYPNTGFIFIFEI 572 (1186)
T ss_pred ceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcCCC---CCCceeeccceEEEeecCCCCCCCcCceeEEEE
Confidence 77776 12223456667788999999999999955444 2322222233222221111222 3369999999
Q ss_pred ecCCCCcceeeeccCCHHHHHHHHHHHHHH
Q 006638 84 YNSLDHNEKLKLGARSPEEAAKWIRSLQEA 113 (637)
Q Consensus 84 yn~~~~~~~~~~~~~~~eea~~W~~~~~~a 113 (637)
|=..+ +-+.+|..+++++++|-+++..+
T Consensus 573 ~l~~e--r~~~fgle~ad~l~~wt~aiaKh 600 (1186)
T KOG1117|consen 573 YLPGE--RVFLFGLETADALRKWTEAIAKH 600 (1186)
T ss_pred eeccc--ceEEeecccHHHHHHHHHHHHHh
Confidence 97664 67789999999999999887654
No 131
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=28.76 E-value=2.1e+02 Score=25.48 Aligned_cols=74 Identities=23% Similarity=0.371 Sum_probs=38.9
Q ss_pred ccccccccceeeEeecc-eeeeeecCCCC---CCCccceeeeecCceEEecCCcceeeCceEEEEEEecCCCCcceeeec
Q 006638 21 RIGMQISRKRYFILLDN-CLNGYKMVPSS---EKEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNSLDHNEKLKLG 96 (637)
Q Consensus 21 ~lg~~~~~~Ryfvl~~~-~~~~yKr~P~~---~~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~~~~~~~~~~ 96 (637)
|-|. |.++|=|+|-+. .|-|+ +|.. .|+.|+-+ .+++|+- .+++.|+| ..-+....++
T Consensus 10 r~gl-f~kkR~LiLTd~PrL~yv--dp~~~~~KgeIp~s~----~~l~v~~-----~~~~~F~I----~Tp~rty~le-- 71 (89)
T cd01262 10 RKGL-FAKKRQLILTNGPRLIYV--DPVKKVVKGEIPWSD----VELRVEV-----KNSSHFFV----HTPNKVYSFE-- 71 (89)
T ss_pred hhcc-ccceeeEEEecCceEEEE--cCCcCeEEeEecccc----cceEEEE-----ecCccEEE----ECCCceEEEE--
Confidence 3454 668998888653 22233 4544 34555444 2667762 23344444 1111111121
Q ss_pred cCCHHHHHHHHHHHHHH
Q 006638 97 ARSPEEAAKWIRSLQEA 113 (637)
Q Consensus 97 ~~~~eea~~W~~~~~~a 113 (637)
.....|.+|+++++++
T Consensus 72 -D~~~~a~~W~~~I~~~ 87 (89)
T cd01262 72 -DPKGRASQWKKAIEDL 87 (89)
T ss_pred -CCCCCHHHHHHHHHHH
Confidence 1235688899999987
No 132
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=28.38 E-value=1.3e+02 Score=33.20 Aligned_cols=101 Identities=18% Similarity=0.258 Sum_probs=65.9
Q ss_pred ceeeEEEEEeecccccccccceeeEeecceeeeeecCCCCCCCccceeeeecC----ceEEe-cCCcceeeCceEEEEEE
Q 006638 9 KIEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSEKEEPVKSAMIHS----CIRVT-DNGRESINRKVLFVFTL 83 (637)
Q Consensus 9 ~~egW~~~~~~~~lg~~~~~~Ryfvl~~~~~~~yKr~P~~~~~~pi~~~ii~~----~~rVe-d~Gr~~~~~~~~~v~~~ 83 (637)
.|-||+.-=--|.|--+-.+.||+-|+|..+..|-.-|-+.-+- .|..+.=. -++|- |- -.-.+-=|+|.+
T Consensus 282 vyMGWvne~~q~~~s~q~y~P~FLaLkG~~~y~F~tPPv~t~dw-~rAe~ty~vye~mfki~Kds---d~~D~R~~CF~~ 357 (505)
T KOG3549|consen 282 VYMGWVNEGVQNNISWQSYKPRFLALKGTEVYLFETPPVNTADW-SRAEVTYKVYETMFKIVKDS---DTVDSRQHCFLL 357 (505)
T ss_pred EEeeeccccccCcccccccCceeEEecCcEEEEEcCCCcchhhh-hhhhhhHHHHHHHHHHhccc---cccccccceEEE
Confidence 59999987444447767679999999999999998888663210 01100000 11111 10 011223478899
Q ss_pred ecCCCCcceeeeccCCHHHHHHHHHHHHHHHh
Q 006638 84 YNSLDHNEKLKLGARSPEEAAKWIRSLQEAAV 115 (637)
Q Consensus 84 yn~~~~~~~~~~~~~~~eea~~W~~~~~~a~~ 115 (637)
-...++++-+- .....|.++|-++|+.|+-
T Consensus 358 qs~~ge~~yfs--VEl~seLa~wE~sfq~Atf 387 (505)
T KOG3549|consen 358 QSSGGEPRYFS--VELRSELARWENSFQAATF 387 (505)
T ss_pred EcCCCCceEEE--EehhhHHHHHHHHHhhHHh
Confidence 88888777655 6677899999999999865
No 133
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=27.28 E-value=67 Score=36.50 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=32.1
Q ss_pred ceEEEEEEecCCCCcceeeeccCCHHHHHHHHHHHHHHHh
Q 006638 76 KVLFVFTLYNSLDHNEKLKLGARSPEEAAKWIRSLQEAAV 115 (637)
Q Consensus 76 ~~~~v~~~yn~~~~~~~~~~~~~~~eea~~W~~~~~~a~~ 115 (637)
.+=|||-+.++.+ +++-+-|.+.+|...||++|++++-
T Consensus 453 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 453 NAAHVFAVAFKTG--RRLLFQARSDPERDAWMQKIQSVLG 490 (496)
T ss_pred CCCcEEEEEecCC--cEEEEecCCchhHHHHHHHHHHhcC
Confidence 3568899988877 5677889999999999999999853
No 134
>PLN02647 acyl-CoA thioesterase
Probab=22.67 E-value=3.4e+02 Score=30.94 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=48.7
Q ss_pred CCCCCCCccceeeee---cC-----ceEEe--c----CCcceeeCceEEEEEEecC-CCCcceee-eccCCHHHHHHHHH
Q 006638 45 VPSSEKEEPVKSAMI---HS-----CIRVT--D----NGRESINRKVLFVFTLYNS-LDHNEKLK-LGARSPEEAAKWIR 108 (637)
Q Consensus 45 ~P~~~~~~pi~~~ii---~~-----~~rVe--d----~Gr~~~~~~~~~v~~~yn~-~~~~~~~~-~~~~~~eea~~W~~ 108 (637)
.|...|+...-.|-| |. .++|. + .|.+.+...++|+|...|. .+++..++ +-+.|.+|.+.|.+
T Consensus 156 ~Pi~~g~~v~l~g~Vt~vGrSSMEV~v~V~~~~~~~~~~~~~~~~~a~FtfVA~D~~~gkp~pVp~l~pete~Ek~~~e~ 235 (437)
T PLN02647 156 KPIRVDVDLKIVGAVTWVGRSSMEIQLEVIQPTKDESNTSDSVALTANFTFVARDSKTGKSAPVNRLSPETEEEKLLFEE 235 (437)
T ss_pred CCCcCCcEEEEEEEEEEecCCeEEEEEEEEEccccCCCCcEEEEEEEEEEEEEEcCCCCCeeeCCCCCCCCHHHHHHHHH
Confidence 577766555445544 22 34444 2 3567789999999999998 67777776 89999999999766
Q ss_pred HHHH
Q 006638 109 SLQE 112 (637)
Q Consensus 109 ~~~~ 112 (637)
+.+.
T Consensus 236 a~~R 239 (437)
T PLN02647 236 AEAR 239 (437)
T ss_pred HHHH
Confidence 6554
No 135
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=22.38 E-value=2.1e+02 Score=33.25 Aligned_cols=103 Identities=20% Similarity=0.270 Sum_probs=72.9
Q ss_pred ceeeEEEEEeecccccccccceeeEeecceeeeeecCCCCC-CCccceeeeecCceEEecCCcceeeCceEEEEEEecCC
Q 006638 9 KIEGWLYAILVNRIGMQISRKRYFILLDNCLNGYKMVPSSE-KEEPVKSAMIHSCIRVTDNGRESINRKVLFVFTLYNSL 87 (637)
Q Consensus 9 ~~egW~~~~~~~~lg~~~~~~Ryfvl~~~~~~~yKr~P~~~-~~~pi~~~ii~~~~rVed~Gr~~~~~~~~~v~~~yn~~ 87 (637)
.|+|.+|.=+- |+.-=-+=||||+.-=|.|+.++-+.+ .+.-...-+=++|+-+-=.||+.+.--.=|.|+|=-.+
T Consensus 318 ei~GfL~~K~d---gkKsWKk~yf~LR~SGLYys~K~tsk~~r~Lq~l~~~~~snVYt~i~~rKkyksPTd~~f~~K~~~ 394 (622)
T KOG3751|consen 318 EIQGFLYLKED---GKKSWKKHYFVLRRSGLYYSTKGTSKEPRHLQCLADLHSSNVYTGIGGRKKYKSPTDYGFCIKPNK 394 (622)
T ss_pred cccceeeeccc---ccccceeEEEEEecCcceEccCCCCCCchhhHHHHhcccCceEEeecchhccCCCCCceEEeeecc
Confidence 69999998443 333334568999999997776444332 13333344446788888899999999999999995433
Q ss_pred -CCc-ceee-eccCCHHHHHHHHHHHHHHH
Q 006638 88 -DHN-EKLK-LGARSPEEAAKWIRSLQEAA 114 (637)
Q Consensus 88 -~~~-~~~~-~~~~~~eea~~W~~~~~~a~ 114 (637)
... +-|+ |-|.+.+-.-+|+-||+-++
T Consensus 395 ~~~~~r~lk~lCAEDe~t~~~WltAiRl~K 424 (622)
T KOG3751|consen 395 LRNKRRFLKMLCAEDEQTRTCWLTAIRLLK 424 (622)
T ss_pred ccCcccceeeeecccchhHHHHHHHHHHHH
Confidence 222 5667 66777888889999999875
No 136
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=21.89 E-value=1.3e+02 Score=28.52 Aligned_cols=40 Identities=25% Similarity=0.404 Sum_probs=29.5
Q ss_pred eCceEEEEEEecCCCCcceeeeccCCHHHHHHHHHHHHHH
Q 006638 74 NRKVLFVFTLYNSLDHNEKLKLGARSPEEAAKWIRSLQEA 113 (637)
Q Consensus 74 ~~~~~~v~~~yn~~~~~~~~~~~~~~~eea~~W~~~~~~a 113 (637)
..+.+|=|+|-.---....++|=|.|..+-.+|+++|+++
T Consensus 95 ~~~~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 95 DSKSLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp -TSSEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred cCCCccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 4588999999554444555899999999999999999986
No 137
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=21.30 E-value=1.2e+02 Score=27.45 Aligned_cols=94 Identities=20% Similarity=0.215 Sum_probs=48.7
Q ss_pred eEEEEEeecccccccccceeeEe--ecceeeeeecCCCCCC------CccceeeeecCceEEecCCcc--eeeCceEEEE
Q 006638 12 GWLYAILVNRIGMQISRKRYFIL--LDNCLNGYKMVPSSEK------EEPVKSAMIHSCIRVTDNGRE--SINRKVLFVF 81 (637)
Q Consensus 12 gW~~~~~~~~lg~~~~~~Ryfvl--~~~~~~~yKr~P~~~~------~~pi~~~ii~~~~rVed~Gr~--~~~~~~~~v~ 81 (637)
..|.++.. ..-+..|+|-| ++..|.....++.... ..=||.|---.+-|....... ..-. ..|
T Consensus 10 ~~~~K~~~----~~~~~~~~f~ld~~~~~l~W~~~~~~~~~~l~i~~IkeIR~G~~~k~~~~~~~~~~~~~~e~---~~f 82 (115)
T cd01248 10 SVFIKWDD----TSRERRRLFRLDEKGFFLYWKDEGKKEKKVLDISSIKEIRTGKQPKDLKLRAELNQGNSLEE---RCF 82 (115)
T ss_pred CEEEEEcC----CCceeeEEEEEcCCCcEEEEeCCCCccccEEEehhhhhhhCCCCCcchHHhhhhhcCCCccc---cEE
Confidence 45666544 23456688888 4677755543432111 122333332222222211111 1222 233
Q ss_pred EE-ecCCCCcceeeeccCCHHHHHHHHHHHHH
Q 006638 82 TL-YNSLDHNEKLKLGARSPEEAAKWIRSLQE 112 (637)
Q Consensus 82 ~~-yn~~~~~~~~~~~~~~~eea~~W~~~~~~ 112 (637)
+| |......+.+.|-|.|.++|..|...++.
T Consensus 83 TIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 83 TIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred EEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 33 32222455688999999999999998864
Done!