Query 006640
Match_columns 637
No_of_seqs 841 out of 4157
Neff 10.8
Searched_HMMs 46136
Date Thu Mar 28 12:21:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006640.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006640hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.5E-80 3.3E-85 692.2 47.7 526 67-624 217-753 (857)
2 PLN03081 pentatricopeptide (PP 100.0 1.1E-72 2.4E-77 614.3 51.4 503 70-623 85-589 (697)
3 PLN03218 maturation of RBCL 1; 100.0 1.6E-64 3.5E-69 551.9 63.4 509 68-585 366-913 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 1.5E-62 3.3E-67 536.4 61.4 446 70-520 404-874 (1060)
5 PLN03077 Protein ECB2; Provisi 100.0 8.7E-62 1.9E-66 541.6 46.8 440 68-521 148-617 (857)
6 PLN03081 pentatricopeptide (PP 100.0 3.3E-59 7.2E-64 508.7 43.9 440 104-583 84-525 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.3E-30 2.8E-35 297.7 60.3 496 72-584 363-869 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.4E-30 5.2E-35 295.5 59.9 494 69-579 394-898 (899)
9 PRK11447 cellulose synthase su 99.9 1E-22 2.2E-27 233.4 56.9 498 69-581 59-700 (1157)
10 PRK11447 cellulose synthase su 99.9 2.3E-22 5E-27 230.5 56.6 489 76-579 116-738 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 1.5E-22 3.2E-27 196.5 36.4 433 75-525 51-488 (966)
12 KOG4626 O-linked N-acetylgluco 99.9 5.5E-22 1.2E-26 192.6 33.4 444 110-570 51-508 (966)
13 TIGR00990 3a0801s09 mitochondr 99.9 7.1E-19 1.5E-23 189.6 55.7 432 73-523 128-572 (615)
14 PRK09782 bacteriophage N4 rece 99.9 3.2E-19 6.9E-24 195.5 51.7 223 352-584 476-709 (987)
15 PRK11788 tetratricopeptide rep 99.9 3.9E-21 8.5E-26 196.7 34.4 302 151-459 44-354 (389)
16 TIGR00990 3a0801s09 mitochondr 99.9 8.8E-19 1.9E-23 188.8 51.4 424 109-549 129-575 (615)
17 PRK11788 tetratricopeptide rep 99.9 3.9E-20 8.4E-25 189.4 37.3 302 184-493 42-353 (389)
18 PRK15174 Vi polysaccharide exp 99.9 3E-18 6.5E-23 184.0 49.6 328 78-416 48-380 (656)
19 PRK09782 bacteriophage N4 rece 99.9 3.5E-18 7.6E-23 187.3 50.1 452 104-575 178-734 (987)
20 PRK10049 pgaA outer membrane p 99.9 5.3E-18 1.1E-22 186.1 51.0 405 69-486 12-455 (765)
21 PRK15174 Vi polysaccharide exp 99.9 1.3E-18 2.8E-23 186.8 44.8 331 145-486 45-380 (656)
22 PRK10049 pgaA outer membrane p 99.9 4.3E-18 9.3E-23 186.8 49.9 412 104-525 12-459 (765)
23 PRK14574 hmsH outer membrane p 99.9 8.2E-17 1.8E-21 173.1 54.1 435 79-526 41-517 (822)
24 KOG2002 TPR-containing nuclear 99.9 2.2E-17 4.8E-22 169.4 43.3 450 68-526 266-749 (1018)
25 PRK14574 hmsH outer membrane p 99.8 2.1E-15 4.5E-20 162.4 51.0 426 115-551 42-519 (822)
26 KOG2002 TPR-containing nuclear 99.8 2.7E-16 5.9E-21 161.5 38.7 456 87-551 251-751 (1018)
27 KOG4422 Uncharacterized conser 99.8 3.5E-13 7.7E-18 126.4 44.5 423 72-520 116-588 (625)
28 KOG0495 HAT repeat protein [RN 99.8 5.1E-13 1.1E-17 131.8 46.3 506 69-598 377-895 (913)
29 KOG4422 Uncharacterized conser 99.7 3.7E-13 8.1E-18 126.3 39.4 364 68-453 203-591 (625)
30 KOG2076 RNA polymerase III tra 99.7 2.8E-12 6.1E-17 131.6 48.7 369 70-445 137-548 (895)
31 KOG0495 HAT repeat protein [RN 99.7 9.7E-12 2.1E-16 122.9 48.2 431 78-520 412-878 (913)
32 KOG1915 Cell cycle control pro 99.7 1.1E-11 2.4E-16 118.0 46.9 442 71-525 72-539 (677)
33 KOG2003 TPR repeat-containing 99.7 6.1E-14 1.3E-18 132.2 29.2 443 74-525 203-692 (840)
34 KOG2076 RNA polymerase III tra 99.7 2.7E-12 5.7E-17 131.8 42.0 365 110-480 142-548 (895)
35 PRK10747 putative protoheme IX 99.7 8.2E-13 1.8E-17 133.9 36.3 289 190-520 97-388 (398)
36 KOG1155 Anaphase-promoting com 99.7 3.9E-11 8.4E-16 114.3 43.7 366 139-520 161-534 (559)
37 KOG2003 TPR repeat-containing 99.7 3.6E-13 7.8E-18 127.1 29.8 428 113-549 207-693 (840)
38 TIGR00540 hemY_coli hemY prote 99.6 1.4E-12 2.9E-17 133.1 35.0 260 255-519 125-396 (409)
39 TIGR00540 hemY_coli hemY prote 99.6 2.5E-12 5.4E-17 131.2 35.4 289 189-485 96-397 (409)
40 KOG0547 Translocase of outer m 99.6 4.1E-12 8.9E-17 121.5 33.8 418 72-520 115-564 (606)
41 PRK10747 putative protoheme IX 99.6 3.7E-12 8.1E-17 129.1 36.3 289 154-485 96-388 (398)
42 PF13429 TPR_15: Tetratricopep 99.6 4.6E-15 1E-19 143.7 13.6 262 77-345 13-275 (280)
43 PF13429 TPR_15: Tetratricopep 99.6 4.3E-15 9.3E-20 144.0 12.3 257 220-483 15-273 (280)
44 KOG1155 Anaphase-promoting com 99.6 1.8E-10 3.9E-15 109.9 42.2 381 103-522 160-553 (559)
45 KOG1915 Cell cycle control pro 99.6 1.4E-09 3E-14 104.1 46.3 418 68-500 103-547 (677)
46 KOG1126 DNA-binding cell divis 99.6 8.9E-13 1.9E-17 131.2 25.2 286 227-524 333-622 (638)
47 COG2956 Predicted N-acetylgluc 99.5 5.2E-11 1.1E-15 108.4 31.6 56 361-416 222-277 (389)
48 COG2956 Predicted N-acetylgluc 99.5 9.6E-11 2.1E-15 106.6 32.6 219 121-346 49-277 (389)
49 KOG1126 DNA-binding cell divis 99.5 6.2E-12 1.3E-16 125.3 26.2 282 123-417 335-620 (638)
50 COG3071 HemY Uncharacterized e 99.5 1.9E-10 4.1E-15 108.1 33.7 291 190-519 97-387 (400)
51 KOG1173 Anaphase-promoting com 99.5 3.8E-10 8.3E-15 110.4 36.5 455 71-545 48-535 (611)
52 COG3071 HemY Uncharacterized e 99.5 2.8E-10 6E-15 107.0 33.9 292 155-485 97-388 (400)
53 KOG0547 Translocase of outer m 99.5 2.8E-10 6E-15 109.3 31.0 351 111-486 119-490 (606)
54 KOG3785 Uncharacterized conser 99.4 2.1E-09 4.6E-14 99.1 31.9 121 397-522 368-490 (557)
55 KOG1156 N-terminal acetyltrans 99.4 4.2E-08 9.1E-13 98.0 42.4 424 83-521 52-510 (700)
56 KOG1173 Anaphase-promoting com 99.4 3E-09 6.6E-14 104.3 32.9 284 212-503 243-532 (611)
57 TIGR02521 type_IV_pilW type IV 99.4 5.2E-10 1.1E-14 105.5 27.6 165 72-240 31-196 (234)
58 KOG2047 mRNA splicing factor [ 99.4 1.2E-07 2.6E-12 94.5 43.9 434 72-519 102-612 (835)
59 PRK12370 invasion protein regu 99.4 6.3E-10 1.4E-14 118.1 30.9 269 104-383 253-536 (553)
60 KOG1156 N-terminal acetyltrans 99.4 6.4E-08 1.4E-12 96.7 41.5 430 75-520 11-466 (700)
61 PRK12370 invasion protein regu 99.4 1E-09 2.2E-14 116.5 31.4 269 139-418 253-536 (553)
62 KOG2047 mRNA splicing factor [ 99.4 2.3E-07 5.1E-12 92.5 44.7 290 226-521 360-686 (835)
63 TIGR02521 type_IV_pilW type IV 99.4 8.6E-10 1.9E-14 103.9 27.6 204 105-312 29-232 (234)
64 KOG4318 Bicoid mRNA stability 99.4 3.6E-09 7.8E-14 108.8 32.3 428 68-522 21-557 (1088)
65 KOG1174 Anaphase-promoting com 99.3 2.4E-07 5.3E-12 87.6 40.9 306 210-525 191-503 (564)
66 KOG1129 TPR repeat-containing 99.3 1.7E-10 3.8E-15 105.0 19.6 233 286-525 226-461 (478)
67 KOG4162 Predicted calmodulin-b 99.3 4.2E-08 9.2E-13 99.9 38.5 408 103-522 319-783 (799)
68 KOG1129 TPR repeat-containing 99.3 1.2E-09 2.5E-14 99.7 22.4 238 247-492 222-461 (478)
69 KOG1174 Anaphase-promoting com 99.3 2.1E-07 4.6E-12 88.0 37.3 403 70-494 95-505 (564)
70 KOG4318 Bicoid mRNA stability 99.3 3.3E-09 7.1E-14 109.1 27.3 254 94-368 12-286 (1088)
71 KOG2376 Signal recognition par 99.2 6.7E-07 1.5E-11 88.6 39.9 416 79-520 19-518 (652)
72 KOG1840 Kinesin light chain [C 99.2 1.3E-08 2.7E-13 103.1 29.0 206 289-522 247-479 (508)
73 KOG1840 Kinesin light chain [C 99.2 8.1E-09 1.8E-13 104.4 26.8 231 285-544 201-478 (508)
74 PF12569 NARP1: NMDA receptor- 99.2 8.4E-08 1.8E-12 98.4 33.4 307 182-520 9-332 (517)
75 KOG4162 Predicted calmodulin-b 99.2 8.3E-07 1.8E-11 90.7 39.5 401 137-549 318-787 (799)
76 PF13041 PPR_2: PPR repeat fam 99.2 6E-11 1.3E-15 80.4 6.7 49 421-469 1-49 (50)
77 PF12569 NARP1: NMDA receptor- 99.2 1.2E-07 2.7E-12 97.2 33.3 130 285-416 196-333 (517)
78 PRK11189 lipoprotein NlpI; Pro 99.2 3E-08 6.4E-13 96.4 27.2 218 86-313 40-266 (296)
79 COG3063 PilF Tfp pilus assembl 99.2 5.3E-08 1.1E-12 85.2 24.9 184 116-303 44-227 (250)
80 PF13041 PPR_2: PPR repeat fam 99.1 1.3E-10 2.8E-15 78.7 6.5 49 211-259 1-49 (50)
81 KOG4340 Uncharacterized conser 99.1 1.5E-07 3.3E-12 85.0 27.2 291 75-378 13-335 (459)
82 KOG0548 Molecular co-chaperone 99.1 4.1E-07 9E-12 89.3 32.4 403 79-504 9-470 (539)
83 PRK11189 lipoprotein NlpI; Pro 99.1 8.5E-08 1.8E-12 93.2 27.2 94 286-381 67-160 (296)
84 KOG0548 Molecular co-chaperone 99.1 1.3E-06 2.7E-11 86.0 33.5 380 68-470 32-471 (539)
85 KOG3785 Uncharacterized conser 99.1 4.9E-07 1.1E-11 83.8 29.0 413 79-519 29-454 (557)
86 COG3063 PilF Tfp pilus assembl 99.1 1.3E-07 2.8E-12 82.8 23.9 201 320-524 37-238 (250)
87 KOG1127 TPR repeat-containing 99.1 2.5E-07 5.4E-12 96.7 29.0 476 87-572 473-1027(1238)
88 cd05804 StaR_like StaR_like; a 99.1 1.9E-06 4.2E-11 87.0 35.7 23 394-416 270-292 (355)
89 cd05804 StaR_like StaR_like; a 99.0 1.6E-06 3.5E-11 87.5 34.4 199 72-275 6-213 (355)
90 KOG0985 Vesicle coat protein c 99.0 1.3E-06 2.9E-11 91.4 32.5 487 75-592 609-1260(1666)
91 KOG0624 dsRNA-activated protei 99.0 1.7E-05 3.8E-10 73.5 35.1 312 141-486 37-369 (504)
92 KOG2376 Signal recognition par 99.0 1.2E-05 2.7E-10 79.9 36.3 219 114-349 19-255 (652)
93 KOG1914 mRNA cleavage and poly 99.0 4.9E-05 1.1E-09 75.0 42.2 136 67-206 15-166 (656)
94 KOG0624 dsRNA-activated protei 98.9 1.1E-05 2.4E-10 74.8 31.9 318 177-525 38-373 (504)
95 KOG3616 Selective LIM binding 98.9 2.8E-06 6.1E-11 86.0 30.1 200 361-592 740-948 (1636)
96 PF04733 Coatomer_E: Coatomer 98.9 6E-08 1.3E-12 92.8 17.8 254 223-494 11-270 (290)
97 KOG3616 Selective LIM binding 98.9 2.5E-06 5.4E-11 86.4 29.1 26 555-580 998-1023(1636)
98 PF04733 Coatomer_E: Coatomer 98.9 4.2E-08 9E-13 93.8 15.8 251 258-525 11-268 (290)
99 PRK04841 transcriptional regul 98.9 1.4E-05 3E-10 91.6 39.2 265 222-486 461-759 (903)
100 KOG1125 TPR repeat-containing 98.9 5.6E-07 1.2E-11 89.2 22.6 220 80-309 293-524 (579)
101 PRK04841 transcriptional regul 98.9 2.4E-05 5.2E-10 89.7 39.5 337 186-523 383-761 (903)
102 KOG4340 Uncharacterized conser 98.9 1E-05 2.3E-10 73.5 28.2 292 110-414 13-336 (459)
103 KOG1127 TPR repeat-containing 98.8 9E-06 1.9E-10 85.5 30.4 441 122-576 473-991 (1238)
104 KOG1125 TPR repeat-containing 98.8 8.7E-07 1.9E-11 87.8 20.6 249 188-444 296-563 (579)
105 KOG3617 WD40 and TPR repeat-co 98.7 0.00017 3.6E-09 74.7 34.1 393 72-519 726-1171(1416)
106 KOG0985 Vesicle coat protein c 98.7 0.00039 8.5E-09 73.6 37.2 320 106-483 983-1304(1666)
107 PLN02789 farnesyltranstransfer 98.7 3.4E-05 7.3E-10 75.0 28.2 145 74-223 39-186 (320)
108 PLN02789 farnesyltranstransfer 98.7 3.4E-05 7.3E-10 75.0 28.1 236 86-346 34-301 (320)
109 KOG3617 WD40 and TPR repeat-co 98.7 0.00013 2.8E-09 75.5 32.1 299 70-415 755-1107(1416)
110 KOG1070 rRNA processing protei 98.7 2.2E-05 4.8E-10 85.5 27.7 205 212-421 1457-1667(1710)
111 KOG1128 Uncharacterized conser 98.7 3.7E-06 8E-11 85.7 20.6 222 280-523 395-617 (777)
112 KOG1128 Uncharacterized conser 98.6 6.9E-06 1.5E-10 83.8 22.1 220 246-486 396-615 (777)
113 KOG1070 rRNA processing protei 98.6 4.5E-05 9.9E-10 83.2 27.6 223 281-508 1456-1686(1710)
114 COG5010 TadD Flp pilus assembl 98.6 9.4E-06 2E-10 73.0 18.3 165 106-276 66-230 (257)
115 COG5010 TadD Flp pilus assembl 98.6 1.9E-05 4.2E-10 71.0 20.2 158 357-518 70-227 (257)
116 PRK14720 transcript cleavage f 98.5 6.4E-05 1.4E-09 81.4 27.6 280 210-549 28-310 (906)
117 PRK10370 formate-dependent nit 98.5 1.9E-05 4.2E-10 71.3 20.3 118 366-486 52-172 (198)
118 TIGR03302 OM_YfiO outer membra 98.5 1.5E-05 3.3E-10 75.1 20.4 187 317-522 32-232 (235)
119 PRK10370 formate-dependent nit 98.5 3.2E-05 6.9E-10 69.9 20.9 149 360-524 23-175 (198)
120 TIGR03302 OM_YfiO outer membra 98.5 3.5E-05 7.5E-10 72.6 22.0 60 253-312 171-232 (235)
121 PF12854 PPR_1: PPR repeat 98.5 2.1E-07 4.6E-12 56.4 4.2 32 418-449 2-33 (34)
122 PF12854 PPR_1: PPR repeat 98.5 1.9E-07 4.2E-12 56.6 4.0 31 173-203 3-33 (34)
123 KOG3081 Vesicle coat complex C 98.5 0.00022 4.9E-09 64.3 24.2 140 326-476 116-259 (299)
124 PRK14720 transcript cleavage f 98.5 3.3E-05 7.1E-10 83.6 22.4 226 247-525 30-255 (906)
125 PRK15359 type III secretion sy 98.4 1.7E-05 3.8E-10 67.6 16.6 94 391-486 27-120 (144)
126 KOG1914 mRNA cleavage and poly 98.4 0.0024 5.2E-08 63.5 42.3 415 104-524 17-503 (656)
127 PRK15359 type III secretion sy 98.4 2.3E-05 4.9E-10 66.9 15.5 95 110-206 27-121 (144)
128 PRK15179 Vi polysaccharide bio 98.4 0.00028 6E-09 75.9 26.9 182 138-330 82-267 (694)
129 KOG3081 Vesicle coat complex C 98.3 0.00056 1.2E-08 61.8 23.5 236 79-332 15-255 (299)
130 TIGR02552 LcrH_SycD type III s 98.3 3.1E-05 6.8E-10 65.7 15.4 96 389-486 18-113 (135)
131 PRK15179 Vi polysaccharide bio 98.3 0.00014 2.9E-09 78.2 23.4 146 103-253 82-227 (694)
132 TIGR02552 LcrH_SycD type III s 98.2 6.3E-05 1.4E-09 63.8 15.5 96 143-241 18-113 (135)
133 KOG3060 Uncharacterized conser 98.2 0.0021 4.5E-08 57.8 24.4 186 263-452 27-220 (289)
134 KOG3060 Uncharacterized conser 98.2 0.0017 3.8E-08 58.3 23.7 153 86-242 26-183 (289)
135 COG4783 Putative Zn-dependent 98.2 0.00078 1.7E-08 66.3 23.4 239 79-347 209-454 (484)
136 COG4783 Putative Zn-dependent 98.2 0.00091 2E-08 65.8 23.5 112 119-234 318-429 (484)
137 PF09976 TPR_21: Tetratricopep 98.1 0.00025 5.4E-09 60.8 16.1 126 390-519 14-144 (145)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00025 5.5E-09 70.4 16.4 126 143-275 170-295 (395)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00026 5.5E-09 70.3 15.7 126 109-241 171-296 (395)
140 PF09976 TPR_21: Tetratricopep 98.0 0.00056 1.2E-08 58.6 16.0 21 150-170 56-76 (145)
141 KOG2041 WD40 repeat protein [G 98.0 0.031 6.7E-07 57.5 31.4 205 104-343 689-903 (1189)
142 KOG2053 Mitochondrial inherita 98.0 0.04 8.7E-07 58.6 46.8 201 75-279 44-257 (932)
143 TIGR00756 PPR pentatricopeptid 97.9 2E-05 4.4E-10 48.5 4.5 33 425-457 2-34 (35)
144 TIGR00756 PPR pentatricopeptid 97.9 2.6E-05 5.7E-10 47.9 4.2 33 74-106 2-34 (35)
145 cd00189 TPR Tetratricopeptide 97.8 0.00043 9.4E-09 53.9 11.8 89 394-484 6-94 (100)
146 PF13812 PPR_3: Pentatricopept 97.8 5.3E-05 1.1E-09 46.2 4.5 32 425-456 3-34 (34)
147 PF13812 PPR_3: Pentatricopept 97.8 5E-05 1.1E-09 46.3 4.4 33 73-105 2-34 (34)
148 KOG2053 Mitochondrial inherita 97.8 0.086 1.9E-06 56.2 46.0 225 81-313 18-256 (932)
149 PRK15363 pathogenicity island 97.7 0.0022 4.7E-08 54.0 15.1 93 391-485 38-130 (157)
150 PF06239 ECSIT: Evolutionarily 97.7 0.001 2.2E-08 58.7 13.5 139 386-543 45-196 (228)
151 KOG0553 TPR repeat-containing 97.7 0.00036 7.7E-09 64.4 11.0 97 396-497 89-186 (304)
152 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00089 1.9E-08 55.1 12.8 95 428-522 7-105 (119)
153 KOG0553 TPR repeat-containing 97.7 0.00064 1.4E-08 62.8 12.5 96 363-462 91-186 (304)
154 PLN03088 SGT1, suppressor of 97.7 0.0011 2.4E-08 66.2 15.5 88 362-451 11-98 (356)
155 cd00189 TPR Tetratricopeptide 97.7 0.00082 1.8E-08 52.3 11.9 95 356-452 3-97 (100)
156 COG5107 RNA14 Pre-mRNA 3'-end 97.6 0.081 1.8E-06 51.9 34.6 435 66-524 36-533 (660)
157 PRK02603 photosystem I assembl 97.6 0.0045 9.8E-08 54.8 16.1 88 354-442 36-125 (172)
158 PRK02603 photosystem I assembl 97.6 0.0043 9.4E-08 54.9 15.9 87 387-474 34-122 (172)
159 PF05843 Suf: Suppressor of fo 97.6 0.0013 2.9E-08 63.1 13.5 129 355-486 3-135 (280)
160 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0033 7.2E-08 51.6 14.3 21 79-99 9-29 (119)
161 PF10037 MRP-S27: Mitochondria 97.6 0.0013 2.9E-08 65.6 13.5 124 313-436 61-186 (429)
162 PLN03088 SGT1, suppressor of 97.6 0.0024 5.1E-08 63.8 15.5 96 396-495 10-105 (356)
163 PF12895 Apc3: Anaphase-promot 97.6 0.0001 2.2E-09 56.3 4.6 80 436-518 2-83 (84)
164 PRK10153 DNA-binding transcrip 97.6 0.0053 1.1E-07 64.1 18.3 143 349-496 333-489 (517)
165 PRK15363 pathogenicity island 97.5 0.0029 6.2E-08 53.3 12.8 99 423-523 35-133 (157)
166 PF14938 SNAP: Soluble NSF att 97.5 0.015 3.3E-07 56.1 19.7 175 72-277 35-225 (282)
167 PF01535 PPR: PPR repeat; Int 97.5 0.00011 2.5E-09 43.5 3.2 29 425-453 2-30 (31)
168 PF10037 MRP-S27: Mitochondria 97.5 0.0017 3.7E-08 64.9 12.9 124 278-401 61-186 (429)
169 PF05843 Suf: Suppressor of fo 97.5 0.0035 7.6E-08 60.3 14.8 43 196-240 55-97 (280)
170 KOG0550 Molecular chaperone (D 97.5 0.013 2.8E-07 56.6 17.9 275 219-522 55-350 (486)
171 CHL00033 ycf3 photosystem I as 97.5 0.0026 5.7E-08 56.1 12.7 94 388-482 35-137 (168)
172 PF08579 RPM2: Mitochondrial r 97.5 0.0022 4.7E-08 50.0 10.3 78 75-152 28-114 (120)
173 CHL00033 ycf3 photosystem I as 97.5 0.0037 8E-08 55.1 13.5 96 353-449 35-139 (168)
174 KOG2041 WD40 repeat protein [G 97.4 0.19 4.2E-06 52.0 30.6 202 70-310 690-905 (1189)
175 PRK10153 DNA-binding transcrip 97.4 0.01 2.2E-07 62.0 18.5 140 382-524 331-484 (517)
176 KOG0550 Molecular chaperone (D 97.4 0.12 2.6E-06 50.2 23.5 64 71-135 48-111 (486)
177 PF12895 Apc3: Anaphase-promot 97.4 0.0003 6.5E-09 53.7 5.3 81 85-167 2-83 (84)
178 PF01535 PPR: PPR repeat; Int 97.4 0.0002 4.4E-09 42.4 3.3 30 73-102 1-30 (31)
179 COG4700 Uncharacterized protei 97.3 0.072 1.6E-06 45.8 18.6 130 385-516 86-216 (251)
180 COG4700 Uncharacterized protei 97.3 0.085 1.8E-06 45.3 18.9 127 175-304 87-214 (251)
181 PF08579 RPM2: Mitochondrial r 97.3 0.0059 1.3E-07 47.7 10.9 79 111-189 29-116 (120)
182 PF14938 SNAP: Soluble NSF att 97.3 0.064 1.4E-06 51.8 21.0 111 184-311 101-224 (282)
183 PRK10866 outer membrane biogen 97.2 0.084 1.8E-06 49.5 20.5 55 429-483 181-237 (243)
184 COG4235 Cytochrome c biogenesi 97.2 0.019 4.1E-07 53.6 15.6 98 387-486 155-255 (287)
185 PF13432 TPR_16: Tetratricopep 97.2 0.0015 3.3E-08 46.8 6.8 55 396-451 5-59 (65)
186 PF13432 TPR_16: Tetratricopep 97.2 0.0015 3.3E-08 46.8 6.7 56 430-486 4-59 (65)
187 PRK10866 outer membrane biogen 97.2 0.21 4.5E-06 46.8 23.7 58 253-310 180-239 (243)
188 PF13414 TPR_11: TPR repeat; P 97.2 0.0016 3.5E-08 47.4 6.7 59 425-484 5-64 (69)
189 PF12688 TPR_5: Tetratrico pep 97.2 0.031 6.7E-07 45.4 14.6 54 397-450 10-65 (120)
190 PF13414 TPR_11: TPR repeat; P 97.2 0.0019 4.1E-08 47.0 7.0 65 387-452 2-67 (69)
191 PF06239 ECSIT: Evolutionarily 97.1 0.014 3E-07 51.7 12.8 87 105-191 45-152 (228)
192 COG4235 Cytochrome c biogenesi 97.1 0.035 7.7E-07 51.8 15.9 99 176-277 155-256 (287)
193 KOG2796 Uncharacterized conser 97.1 0.073 1.6E-06 48.4 17.1 132 144-277 179-315 (366)
194 PF04840 Vps16_C: Vps16, C-ter 97.1 0.34 7.3E-06 47.3 30.5 281 74-413 2-287 (319)
195 PF14559 TPR_19: Tetratricopep 97.0 0.0026 5.6E-08 46.1 6.7 49 156-205 5-53 (68)
196 PF12688 TPR_5: Tetratrico pep 97.0 0.06 1.3E-06 43.8 14.9 91 78-169 7-102 (120)
197 PF14559 TPR_19: Tetratricopep 97.0 0.0027 5.9E-08 46.0 6.5 50 401-451 4-53 (68)
198 PRK10803 tol-pal system protei 97.0 0.024 5.2E-07 53.5 14.3 91 434-524 154-248 (263)
199 KOG1130 Predicted G-alpha GTPa 97.0 0.011 2.3E-07 57.0 11.6 265 79-344 24-341 (639)
200 PF04840 Vps16_C: Vps16, C-ter 96.9 0.44 9.6E-06 46.5 27.2 110 390-519 179-288 (319)
201 KOG1538 Uncharacterized conser 96.9 0.22 4.7E-06 51.2 20.6 88 387-485 746-844 (1081)
202 KOG1130 Predicted G-alpha GTPa 96.9 0.02 4.2E-07 55.3 12.7 131 355-485 197-342 (639)
203 PRK15331 chaperone protein Sic 96.8 0.095 2.1E-06 44.6 14.8 87 398-486 47-133 (165)
204 KOG1538 Uncharacterized conser 96.8 0.21 4.4E-06 51.4 19.3 100 74-202 558-657 (1081)
205 PF07079 DUF1347: Protein of u 96.7 0.69 1.5E-05 45.8 44.3 427 82-521 16-523 (549)
206 PF03704 BTAD: Bacterial trans 96.7 0.055 1.2E-06 46.3 13.3 69 426-495 65-138 (146)
207 COG3898 Uncharacterized membra 96.7 0.68 1.5E-05 44.9 30.3 145 368-522 244-392 (531)
208 PF13371 TPR_9: Tetratricopept 96.6 0.014 3E-07 42.9 7.9 56 396-452 3-58 (73)
209 PRK10803 tol-pal system protei 96.6 0.065 1.4E-06 50.6 14.2 94 391-486 146-245 (263)
210 KOG2796 Uncharacterized conser 96.5 0.62 1.3E-05 42.6 23.9 140 320-462 179-323 (366)
211 KOG2280 Vacuolar assembly/sort 96.5 1.4 3E-05 46.6 29.6 110 390-518 686-795 (829)
212 PF13525 YfiO: Outer membrane 96.5 0.33 7.1E-06 44.2 17.6 58 254-311 11-70 (203)
213 PF13525 YfiO: Outer membrane 96.5 0.43 9.4E-06 43.4 18.3 22 255-276 148-169 (203)
214 PF03704 BTAD: Bacterial trans 96.3 0.041 8.9E-07 47.1 10.1 74 388-462 62-140 (146)
215 PF13431 TPR_17: Tetratricopep 96.3 0.00048 1E-08 41.6 -1.5 32 539-572 2-33 (34)
216 PF13371 TPR_9: Tetratricopept 96.2 0.026 5.6E-07 41.4 7.3 53 152-205 5-57 (73)
217 PF13281 DUF4071: Domain of un 96.1 1.1 2.4E-05 44.2 19.6 27 460-486 307-333 (374)
218 KOG3941 Intermediate in Toll s 96.1 0.15 3.3E-06 46.8 12.6 47 475-521 140-187 (406)
219 PF13281 DUF4071: Domain of un 96.1 1 2.2E-05 44.5 19.1 162 359-522 147-334 (374)
220 PF13424 TPR_12: Tetratricopep 96.0 0.025 5.3E-07 42.2 6.4 26 390-415 7-32 (78)
221 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.08 1.7E-06 52.8 11.1 100 385-490 72-177 (453)
222 PRK15331 chaperone protein Sic 95.9 0.13 2.7E-06 43.9 10.6 92 429-522 43-134 (165)
223 PRK11906 transcriptional regul 95.9 0.57 1.2E-05 47.1 16.7 146 369-520 274-434 (458)
224 PF09205 DUF1955: Domain of un 95.9 0.75 1.6E-05 37.3 14.2 67 388-455 86-152 (161)
225 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.34 7.4E-06 48.5 15.1 68 67-136 70-141 (453)
226 KOG1258 mRNA processing protei 95.9 2.7 5.8E-05 43.5 33.9 389 72-474 45-491 (577)
227 PF13424 TPR_12: Tetratricopep 95.9 0.032 7E-07 41.6 6.4 60 425-484 7-72 (78)
228 KOG1585 Protein required for f 95.7 0.93 2E-05 41.1 15.3 25 144-168 93-117 (308)
229 COG1729 Uncharacterized protei 95.6 0.27 5.8E-06 45.5 12.5 100 425-525 144-247 (262)
230 PF12921 ATP13: Mitochondrial 95.6 0.25 5.3E-06 40.7 11.0 52 173-224 48-99 (126)
231 COG3118 Thioredoxin domain-con 95.6 2.1 4.5E-05 40.3 17.9 145 151-299 143-288 (304)
232 PF10300 DUF3808: Protein of u 95.5 1.2 2.5E-05 46.5 18.4 120 401-523 246-377 (468)
233 COG5107 RNA14 Pre-mRNA 3'-end 95.5 2.9 6.2E-05 41.6 36.0 402 93-522 30-495 (660)
234 COG3898 Uncharacterized membra 95.5 2.6 5.7E-05 41.1 32.2 311 87-422 68-397 (531)
235 KOG1941 Acetylcholine receptor 95.5 0.53 1.1E-05 45.1 14.1 128 356-484 125-272 (518)
236 PF12921 ATP13: Mitochondrial 95.4 0.36 7.8E-06 39.7 11.2 54 453-506 47-101 (126)
237 KOG0543 FKBP-type peptidyl-pro 95.2 0.59 1.3E-05 45.8 13.8 139 79-241 215-354 (397)
238 KOG4555 TPR repeat-containing 95.2 0.78 1.7E-05 37.1 12.0 93 79-172 50-145 (175)
239 KOG0543 FKBP-type peptidyl-pro 95.2 0.64 1.4E-05 45.5 13.9 96 424-522 258-355 (397)
240 PF04184 ST7: ST7 protein; In 95.1 1.3 2.9E-05 44.6 16.2 58 427-484 263-321 (539)
241 smart00299 CLH Clathrin heavy 95.1 1.4 3.1E-05 37.1 14.7 44 76-120 11-54 (140)
242 PRK11906 transcriptional regul 95.1 0.82 1.8E-05 46.0 14.6 120 403-525 273-404 (458)
243 PF04053 Coatomer_WDAD: Coatom 95.0 0.85 1.8E-05 46.8 15.0 155 80-271 269-425 (443)
244 COG0457 NrfG FOG: TPR repeat [ 94.9 3 6.4E-05 38.3 30.7 165 355-522 97-265 (291)
245 smart00299 CLH Clathrin heavy 94.9 1.9 4.1E-05 36.4 15.0 127 110-260 10-137 (140)
246 PF07079 DUF1347: Protein of u 94.9 4.6 0.0001 40.3 41.1 393 75-498 80-530 (549)
247 PF10300 DUF3808: Protein of u 94.8 2.2 4.8E-05 44.4 17.8 164 145-312 191-376 (468)
248 KOG1941 Acetylcholine receptor 94.8 1.6 3.5E-05 42.0 14.8 166 355-520 85-273 (518)
249 COG3118 Thioredoxin domain-con 94.7 4 8.7E-05 38.5 17.9 124 184-311 141-264 (304)
250 KOG4555 TPR repeat-containing 94.5 0.83 1.8E-05 36.9 10.5 53 398-451 53-105 (175)
251 PF04184 ST7: ST7 protein; In 94.4 4.9 0.00011 40.8 17.9 152 76-242 172-324 (539)
252 PF13428 TPR_14: Tetratricopep 94.3 0.18 3.8E-06 32.5 5.5 36 391-427 4-39 (44)
253 KOG1585 Protein required for f 94.2 4.3 9.4E-05 37.0 17.1 204 109-340 33-249 (308)
254 KOG2114 Vacuolar assembly/sort 94.2 10 0.00022 41.1 24.7 175 76-274 338-516 (933)
255 PF04053 Coatomer_WDAD: Coatom 94.1 1.5 3.2E-05 45.1 14.5 131 75-239 298-428 (443)
256 KOG2280 Vacuolar assembly/sort 94.1 9.5 0.00021 40.7 32.0 319 171-520 426-771 (829)
257 KOG2610 Uncharacterized conser 94.1 1.4 3E-05 41.9 12.8 155 117-274 113-273 (491)
258 KOG1920 IkappaB kinase complex 93.9 14 0.0003 41.8 23.6 110 390-519 941-1052(1265)
259 KOG3941 Intermediate in Toll s 93.8 1.3 2.8E-05 41.1 11.8 83 123-205 88-187 (406)
260 PF13428 TPR_14: Tetratricopep 93.7 0.27 5.8E-06 31.7 5.5 27 180-206 4-30 (44)
261 COG0457 NrfG FOG: TPR repeat [ 93.7 5.6 0.00012 36.4 33.4 199 284-486 60-264 (291)
262 KOG1550 Extracellular protein 93.3 13 0.00029 39.8 24.6 178 193-383 228-427 (552)
263 PF13512 TPR_18: Tetratricopep 93.2 3 6.6E-05 34.8 12.1 58 79-136 17-76 (142)
264 PF13170 DUF4003: Protein of u 93.1 8.8 0.00019 37.1 17.7 128 371-500 80-224 (297)
265 PF09613 HrpB1_HrpK: Bacterial 93.0 5.2 0.00011 34.2 13.7 52 154-206 22-73 (160)
266 COG3629 DnrI DNA-binding trans 93.0 1.3 2.9E-05 41.7 10.9 77 390-467 155-236 (280)
267 KOG2610 Uncharacterized conser 92.8 3.7 7.9E-05 39.2 13.2 154 153-310 114-274 (491)
268 COG4649 Uncharacterized protei 92.7 6 0.00013 34.0 14.0 54 153-206 69-123 (221)
269 COG1729 Uncharacterized protei 92.5 2.5 5.3E-05 39.4 11.8 98 144-242 144-244 (262)
270 COG4105 ComL DNA uptake lipopr 92.5 9 0.00019 35.5 21.2 53 254-307 173-228 (254)
271 COG4785 NlpI Lipoprotein NlpI, 92.4 7.7 0.00017 34.7 15.5 162 139-312 96-266 (297)
272 PF08631 SPO22: Meiosis protei 92.3 11 0.00024 36.2 26.5 123 83-206 4-150 (278)
273 COG4649 Uncharacterized protei 92.1 7.1 0.00015 33.6 15.9 125 82-206 68-196 (221)
274 COG3629 DnrI DNA-binding trans 92.0 2 4.3E-05 40.6 10.8 81 142-223 153-237 (280)
275 PF13512 TPR_18: Tetratricopep 91.8 6 0.00013 33.1 12.2 82 110-191 13-96 (142)
276 PF13170 DUF4003: Protein of u 91.8 8.4 0.00018 37.2 15.1 129 229-359 78-223 (297)
277 PF06552 TOM20_plant: Plant sp 91.1 1.7 3.7E-05 37.7 8.4 60 440-503 52-123 (186)
278 PF08631 SPO22: Meiosis protei 91.1 15 0.00033 35.3 26.5 163 354-519 85-272 (278)
279 KOG1258 mRNA processing protei 91.1 22 0.00048 37.1 35.3 389 106-507 44-489 (577)
280 PF13176 TPR_7: Tetratricopept 90.9 0.58 1.3E-05 28.5 4.2 24 426-449 2-25 (36)
281 KOG2114 Vacuolar assembly/sort 90.9 28 0.0006 38.0 27.4 142 80-240 376-517 (933)
282 PF13431 TPR_17: Tetratricopep 90.7 0.34 7.3E-06 29.1 2.9 23 420-442 10-32 (34)
283 KOG2396 HAT (Half-A-TPR) repea 90.7 21 0.00046 36.4 35.7 77 70-148 103-180 (568)
284 KOG4648 Uncharacterized conser 90.6 0.68 1.5E-05 44.0 6.1 47 433-481 107-154 (536)
285 COG4105 ComL DNA uptake lipopr 90.5 15 0.00031 34.2 20.5 52 430-482 174-228 (254)
286 PF10602 RPN7: 26S proteasome 90.4 4 8.7E-05 36.0 10.7 95 424-520 37-140 (177)
287 PF09205 DUF1955: Domain of un 90.3 8.9 0.00019 31.4 14.0 66 213-279 86-151 (161)
288 PF00515 TPR_1: Tetratricopept 89.7 0.89 1.9E-05 27.1 4.3 27 425-451 3-29 (34)
289 PF13176 TPR_7: Tetratricopept 89.5 0.85 1.8E-05 27.8 4.1 25 75-99 2-26 (36)
290 PF07035 Mic1: Colon cancer-as 89.0 14 0.00031 31.9 15.0 98 96-203 18-115 (167)
291 COG4785 NlpI Lipoprotein NlpI, 88.7 18 0.00038 32.6 15.7 63 177-241 99-161 (297)
292 PF00515 TPR_1: Tetratricopept 88.3 1.3 2.8E-05 26.3 4.3 27 460-486 3-29 (34)
293 KOG1920 IkappaB kinase complex 88.1 54 0.0012 37.4 25.6 104 291-414 947-1052(1265)
294 PF04097 Nic96: Nup93/Nic96; 88.0 32 0.00069 37.4 17.4 224 290-520 265-532 (613)
295 PRK09687 putative lyase; Provi 87.9 26 0.00057 33.6 29.0 120 352-485 141-261 (280)
296 KOG4234 TPR repeat-containing 87.9 11 0.00025 33.2 11.0 87 398-486 105-196 (271)
297 PF07719 TPR_2: Tetratricopept 87.5 1.8 3.9E-05 25.6 4.6 29 495-523 3-31 (34)
298 PF10602 RPN7: 26S proteasome 87.4 10 0.00022 33.5 11.1 58 252-309 40-99 (177)
299 PF07719 TPR_2: Tetratricopept 87.3 1.6 3.5E-05 25.8 4.3 26 426-451 4-29 (34)
300 KOG1550 Extracellular protein 86.2 52 0.0011 35.3 26.8 178 158-348 228-427 (552)
301 TIGR02561 HrpB1_HrpK type III 85.8 20 0.00043 30.2 12.5 51 155-206 23-73 (153)
302 PF00637 Clathrin: Region in C 85.8 0.02 4.4E-07 48.8 -6.7 85 78-169 13-97 (143)
303 PF07035 Mic1: Colon cancer-as 85.7 23 0.0005 30.7 15.7 131 129-274 16-146 (167)
304 PF09613 HrpB1_HrpK: Bacterial 85.0 24 0.00051 30.3 14.0 52 399-452 21-73 (160)
305 KOG4570 Uncharacterized conser 84.7 13 0.00028 35.4 10.5 48 368-415 115-162 (418)
306 PF10345 Cohesin_load: Cohesin 84.3 68 0.0015 35.0 41.7 439 70-519 28-603 (608)
307 cd00923 Cyt_c_Oxidase_Va Cytoc 84.1 4.6 9.9E-05 30.9 6.0 50 473-522 22-71 (103)
308 PF13374 TPR_10: Tetratricopep 83.7 2.5 5.5E-05 26.3 4.2 28 73-100 3-30 (42)
309 KOG2396 HAT (Half-A-TPR) repea 83.6 57 0.0012 33.5 37.0 78 93-172 92-170 (568)
310 PF13374 TPR_10: Tetratricopep 83.3 3.1 6.8E-05 25.9 4.5 26 425-450 4-29 (42)
311 PRK09687 putative lyase; Provi 83.1 45 0.00098 32.0 29.1 22 429-451 241-262 (280)
312 KOG0276 Vesicle coat complex C 82.7 34 0.00074 35.8 13.3 153 81-274 595-747 (794)
313 KOG0276 Vesicle coat complex C 82.5 34 0.00074 35.8 13.2 150 119-309 598-747 (794)
314 KOG4234 TPR repeat-containing 82.3 21 0.00045 31.7 10.1 88 363-451 105-196 (271)
315 PF11207 DUF2989: Protein of u 81.6 15 0.00033 32.7 9.3 16 458-473 178-193 (203)
316 PF02284 COX5A: Cytochrome c o 81.6 5.6 0.00012 30.8 5.7 48 476-523 28-75 (108)
317 KOG2066 Vacuolar assembly/sort 81.5 86 0.0019 34.2 27.5 102 79-189 363-467 (846)
318 KOG0403 Neoplastic transformat 81.2 65 0.0014 32.5 16.5 59 357-416 513-571 (645)
319 PF11207 DUF2989: Protein of u 80.7 17 0.00036 32.5 9.2 79 153-233 118-198 (203)
320 PF06552 TOM20_plant: Plant sp 80.6 39 0.00084 29.6 11.1 78 404-490 51-139 (186)
321 KOG4570 Uncharacterized conser 80.5 15 0.00033 34.9 9.3 103 172-276 59-163 (418)
322 PF13181 TPR_8: Tetratricopept 80.0 3.2 7E-05 24.5 3.5 26 426-451 4-29 (34)
323 KOG1464 COP9 signalosome, subu 80.0 52 0.0011 30.7 18.4 50 226-275 40-92 (440)
324 COG3947 Response regulator con 79.9 56 0.0012 31.0 14.8 56 253-309 284-339 (361)
325 PF13181 TPR_8: Tetratricopept 79.7 5.4 0.00012 23.5 4.4 28 495-522 3-30 (34)
326 KOG4648 Uncharacterized conser 79.3 15 0.00033 35.3 9.0 54 361-415 105-158 (536)
327 KOG4279 Serine/threonine prote 79.1 22 0.00048 38.0 10.9 178 354-549 202-399 (1226)
328 PF02259 FAT: FAT domain; Int 79.0 72 0.0016 31.7 24.1 65 387-451 145-212 (352)
329 PF13174 TPR_6: Tetratricopept 78.9 3.8 8.3E-05 23.8 3.5 29 496-524 3-31 (33)
330 cd00923 Cyt_c_Oxidase_Va Cytoc 78.6 19 0.00042 27.6 7.6 47 88-134 23-69 (103)
331 COG2976 Uncharacterized protei 77.5 52 0.0011 29.3 14.0 90 220-313 96-189 (207)
332 PRK15180 Vi polysaccharide bio 77.4 88 0.0019 31.9 14.1 121 189-313 301-421 (831)
333 PF02284 COX5A: Cytochrome c o 76.8 15 0.00033 28.5 6.8 46 336-381 28-73 (108)
334 TIGR03504 FimV_Cterm FimV C-te 76.2 6 0.00013 25.4 3.9 25 78-102 5-29 (44)
335 PF07721 TPR_4: Tetratricopept 74.7 4.8 0.0001 22.2 2.9 21 76-96 5-25 (26)
336 TIGR02561 HrpB1_HrpK type III 73.9 54 0.0012 27.7 12.2 50 190-242 23-73 (153)
337 COG4455 ImpE Protein of avirul 73.4 27 0.00058 31.5 8.4 76 356-432 4-81 (273)
338 KOG4642 Chaperone-dependent E3 73.3 75 0.0016 29.3 11.2 83 363-449 20-104 (284)
339 PF02259 FAT: FAT domain; Int 73.3 1E+02 0.0022 30.6 26.4 64 318-381 146-212 (352)
340 KOG1464 COP9 signalosome, subu 73.3 81 0.0018 29.5 19.5 94 285-379 147-257 (440)
341 PF07575 Nucleopor_Nup85: Nup8 73.1 1E+02 0.0022 33.3 14.7 146 338-501 390-538 (566)
342 PF13174 TPR_6: Tetratricopept 72.3 7.2 0.00016 22.6 3.5 19 432-450 9-27 (33)
343 PF13929 mRNA_stabil: mRNA sta 71.6 96 0.0021 29.6 17.9 63 245-307 199-262 (292)
344 PRK11619 lytic murein transgly 70.9 1.7E+02 0.0036 32.1 33.9 382 79-494 106-512 (644)
345 KOG0890 Protein kinase of the 70.4 2.9E+02 0.0064 34.7 25.4 322 77-418 1388-1732(2382)
346 KOG2471 TPR repeat-containing 69.7 1.4E+02 0.003 30.7 14.3 40 395-435 342-381 (696)
347 COG1747 Uncharacterized N-term 69.5 1.5E+02 0.0031 30.8 25.5 165 281-452 64-234 (711)
348 PF00637 Clathrin: Region in C 69.1 1.7 3.7E-05 36.8 0.3 52 220-271 14-65 (143)
349 TIGR03504 FimV_Cterm FimV C-te 68.0 13 0.00028 23.9 4.0 23 394-416 5-27 (44)
350 PF10579 Rapsyn_N: Rapsyn N-te 67.0 17 0.00036 26.8 4.8 47 470-516 18-66 (80)
351 PF13762 MNE1: Mitochondrial s 66.8 78 0.0017 26.7 10.2 82 425-506 41-128 (145)
352 KOG2063 Vacuolar assembly/sort 66.6 2.3E+02 0.005 32.1 20.2 57 75-135 310-374 (877)
353 COG4455 ImpE Protein of avirul 66.4 44 0.00096 30.2 8.2 50 117-167 11-60 (273)
354 KOG4077 Cytochrome c oxidase, 65.9 25 0.00055 28.5 6.0 48 476-523 67-114 (149)
355 PF08424 NRDE-2: NRDE-2, neces 65.7 1.4E+02 0.0031 29.3 17.9 119 369-489 47-185 (321)
356 COG5159 RPN6 26S proteasome re 65.4 1.3E+02 0.0027 28.6 11.4 53 77-129 8-67 (421)
357 KOG3364 Membrane protein invol 65.3 62 0.0013 26.9 8.2 70 455-525 29-103 (149)
358 KOG0890 Protein kinase of the 64.9 3.8E+02 0.0081 33.9 33.3 62 458-522 1670-1731(2382)
359 PF10579 Rapsyn_N: Rapsyn N-te 64.0 23 0.00051 26.0 5.1 46 435-480 18-65 (80)
360 COG2976 Uncharacterized protei 63.8 1.1E+02 0.0024 27.3 15.5 88 361-453 97-189 (207)
361 PF07163 Pex26: Pex26 protein; 63.2 1.2E+02 0.0025 28.9 10.6 87 325-411 90-181 (309)
362 COG1747 Uncharacterized N-term 63.0 2E+02 0.0042 30.0 25.5 181 245-433 63-249 (711)
363 PF09986 DUF2225: Uncharacteri 62.8 1E+02 0.0022 28.2 10.5 89 434-522 88-194 (214)
364 KOG0376 Serine-threonine phosp 62.8 15 0.00033 37.2 5.4 15 586-600 210-224 (476)
365 PRK10941 hypothetical protein; 61.0 1.5E+02 0.0032 28.3 11.5 60 181-242 185-244 (269)
366 KOG4507 Uncharacterized conser 60.8 65 0.0014 33.7 9.3 129 89-224 590-721 (886)
367 PF04097 Nic96: Nup93/Nic96; 60.7 2.6E+02 0.0056 30.6 23.3 221 72-312 112-356 (613)
368 KOG2659 LisH motif-containing 60.7 87 0.0019 28.6 9.2 98 420-519 23-129 (228)
369 PRK10941 hypothetical protein; 59.2 1.6E+02 0.0034 28.1 11.3 60 392-452 185-244 (269)
370 PF13929 mRNA_stabil: mRNA sta 58.4 1.7E+02 0.0038 27.9 18.1 137 228-364 143-289 (292)
371 PF07163 Pex26: Pex26 protein; 56.9 1.8E+02 0.0039 27.6 15.6 129 72-200 35-181 (309)
372 COG5159 RPN6 26S proteasome re 56.9 1.8E+02 0.0039 27.6 11.0 94 323-416 130-234 (421)
373 COG0790 FOG: TPR repeat, SEL1 56.5 1.9E+02 0.0041 27.8 22.3 149 85-243 54-221 (292)
374 KOG2471 TPR repeat-containing 55.8 2.5E+02 0.0055 29.0 15.0 106 363-470 250-381 (696)
375 COG5187 RPN7 26S proteasome re 55.4 1.9E+02 0.0042 27.5 12.6 67 388-454 115-186 (412)
376 smart00028 TPR Tetratricopepti 54.2 27 0.00058 19.1 3.8 25 496-520 4-28 (34)
377 PF11663 Toxin_YhaV: Toxin wit 54.2 14 0.00031 30.3 2.9 35 81-117 104-138 (140)
378 TIGR02508 type_III_yscG type I 54.0 1E+02 0.0023 24.0 7.8 12 435-446 51-62 (115)
379 KOG4077 Cytochrome c oxidase, 54.0 1E+02 0.0022 25.3 7.4 47 336-382 67-113 (149)
380 COG3947 Response regulator con 52.8 2.2E+02 0.0047 27.3 16.2 57 427-484 283-339 (361)
381 PRK11619 lytic murein transgly 52.1 3.6E+02 0.0078 29.7 39.4 315 79-415 40-373 (644)
382 PF14689 SPOB_a: Sensor_kinase 52.1 37 0.00081 23.7 4.5 22 428-449 28-49 (62)
383 smart00777 Mad3_BUB1_I Mad3/BU 51.8 1.2E+02 0.0025 25.0 7.9 43 475-517 80-123 (125)
384 KOG4507 Uncharacterized conser 50.9 1.5E+02 0.0032 31.4 9.9 102 259-362 618-719 (886)
385 KOG2066 Vacuolar assembly/sort 50.8 3.8E+02 0.0083 29.6 23.8 102 184-295 363-467 (846)
386 COG2909 MalT ATP-dependent tra 49.1 4.3E+02 0.0094 29.7 28.9 88 154-241 427-525 (894)
387 COG3825 Uncharacterized protei 48.9 69 0.0015 30.5 6.8 133 444-598 4-138 (393)
388 KOG0687 26S proteasome regulat 48.9 2.7E+02 0.0058 27.2 13.7 93 425-519 106-207 (393)
389 PHA02875 ankyrin repeat protei 48.0 3.2E+02 0.007 27.9 13.7 76 223-306 9-88 (413)
390 PF12862 Apc5: Anaphase-promot 47.1 1.3E+02 0.0028 23.1 7.4 22 184-205 48-69 (94)
391 PHA02875 ankyrin repeat protei 46.9 3.3E+02 0.0073 27.8 13.7 11 442-452 299-309 (413)
392 KOG0686 COP9 signalosome, subu 46.8 3.2E+02 0.007 27.6 15.1 61 75-135 153-215 (466)
393 COG0790 FOG: TPR repeat, SEL1 46.8 2.7E+02 0.0059 26.7 22.5 84 368-454 128-222 (292)
394 PF11846 DUF3366: Domain of un 46.3 92 0.002 27.9 7.4 32 455-486 141-172 (193)
395 PF11848 DUF3368: Domain of un 46.1 77 0.0017 20.7 5.0 32 469-500 13-44 (48)
396 KOG1308 Hsp70-interacting prot 45.4 26 0.00057 33.9 3.7 116 400-520 126-242 (377)
397 PF08424 NRDE-2: NRDE-2, neces 45.1 3.1E+02 0.0068 27.0 19.7 78 159-239 48-128 (321)
398 COG4941 Predicted RNA polymera 44.9 3.1E+02 0.0068 26.9 11.3 115 404-522 272-394 (415)
399 PF11663 Toxin_YhaV: Toxin wit 43.5 24 0.00052 29.0 2.7 31 154-186 107-137 (140)
400 PF14689 SPOB_a: Sensor_kinase 42.7 74 0.0016 22.2 4.8 20 254-273 29-48 (62)
401 KOG2908 26S proteasome regulat 42.3 3.2E+02 0.0069 26.9 10.2 79 392-470 79-168 (380)
402 PF04762 IKI3: IKI3 family; I 42.3 3.7E+02 0.0079 31.2 12.8 193 288-484 699-927 (928)
403 PF11846 DUF3366: Domain of un 41.9 1.3E+02 0.0027 27.0 7.6 29 211-239 142-170 (193)
404 PF15297 CKAP2_C: Cytoskeleton 41.8 3E+02 0.0066 27.1 10.1 63 405-469 120-186 (353)
405 PF14561 TPR_20: Tetratricopep 41.1 1.6E+02 0.0035 22.5 9.5 54 139-192 19-73 (90)
406 KOG0376 Serine-threonine phosp 41.0 58 0.0013 33.3 5.5 85 119-205 16-100 (476)
407 TIGR02508 type_III_yscG type I 40.7 1.8E+02 0.0038 22.8 8.8 10 155-164 52-61 (115)
408 PRK10564 maltose regulon perip 40.4 66 0.0014 30.8 5.5 37 426-462 260-296 (303)
409 PF08311 Mad3_BUB1_I: Mad3/BUB 40.1 1.9E+02 0.0041 23.7 7.7 44 475-518 80-124 (126)
410 PF09670 Cas_Cas02710: CRISPR- 39.9 4.2E+02 0.009 26.9 12.3 54 116-170 140-197 (379)
411 PF14853 Fis1_TPR_C: Fis1 C-te 39.5 1.2E+02 0.0026 20.5 6.0 13 507-519 15-27 (53)
412 PF11848 DUF3368: Domain of un 39.3 1.1E+02 0.0024 20.0 5.2 35 81-115 11-45 (48)
413 PF14853 Fis1_TPR_C: Fis1 C-te 39.2 1.2E+02 0.0026 20.4 5.2 20 432-451 10-29 (53)
414 cd02679 MIT_spastin MIT: domai 39.0 33 0.00073 25.4 2.7 63 508-580 4-67 (79)
415 KOG2063 Vacuolar assembly/sort 38.9 6.4E+02 0.014 28.8 19.5 27 74-100 506-532 (877)
416 PF12862 Apc5: Anaphase-promot 38.2 1.4E+02 0.0031 22.8 6.4 23 219-241 47-69 (94)
417 KOG0687 26S proteasome regulat 37.9 4E+02 0.0086 26.1 14.8 26 214-239 105-130 (393)
418 COG2178 Predicted RNA-binding 37.9 3E+02 0.0065 24.6 10.2 18 503-520 131-148 (204)
419 PF07575 Nucleopor_Nup85: Nup8 37.1 1.5E+02 0.0033 32.0 8.5 92 179-275 374-465 (566)
420 KOG0991 Replication factor C, 37.1 3.5E+02 0.0075 25.1 16.0 36 456-492 237-272 (333)
421 PF14561 TPR_20: Tetratricopep 36.8 1.9E+02 0.0041 22.1 8.5 31 176-206 21-51 (90)
422 cd00280 TRFH Telomeric Repeat 36.8 2.5E+02 0.0055 24.8 7.9 20 432-451 120-139 (200)
423 PF09477 Type_III_YscG: Bacter 36.5 2.2E+02 0.0047 22.6 8.8 14 190-203 82-95 (116)
424 PRK15180 Vi polysaccharide bio 35.6 5.2E+02 0.011 26.7 27.8 125 79-207 296-421 (831)
425 KOG1308 Hsp70-interacting prot 35.5 48 0.001 32.2 3.8 116 364-484 125-241 (377)
426 smart00386 HAT HAT (Half-A-TPR 34.8 86 0.0019 17.5 4.0 13 404-416 3-15 (33)
427 PF13762 MNE1: Mitochondrial s 34.6 2.9E+02 0.0062 23.4 12.1 80 251-330 42-127 (145)
428 COG0735 Fur Fe2+/Zn2+ uptake r 34.3 2.1E+02 0.0046 24.2 7.2 29 254-282 26-54 (145)
429 PF04910 Tcf25: Transcriptiona 34.2 5E+02 0.011 26.1 21.0 100 106-205 39-167 (360)
430 KOG3807 Predicted membrane pro 34.1 4.5E+02 0.0099 25.6 13.8 24 183-206 281-304 (556)
431 cd00280 TRFH Telomeric Repeat 33.8 3.2E+02 0.0069 24.3 8.0 23 394-416 117-139 (200)
432 PHA02537 M terminase endonucle 33.3 2.4E+02 0.0052 26.1 7.8 23 397-419 92-114 (230)
433 PF04190 DUF410: Protein of un 33.2 4.3E+02 0.0093 25.1 18.6 25 387-411 89-113 (260)
434 PRK10564 maltose regulon perip 33.2 85 0.0018 30.1 5.0 28 111-138 261-288 (303)
435 PRK13800 putative oxidoreducta 32.9 8.3E+02 0.018 28.3 30.6 48 104-155 632-679 (897)
436 PF09670 Cas_Cas02710: CRISPR- 32.7 5.4E+02 0.012 26.1 13.2 53 398-451 141-197 (379)
437 PF11817 Foie-gras_1: Foie gra 32.5 2.4E+02 0.0052 26.4 8.1 58 217-274 182-244 (247)
438 PF08311 Mad3_BUB1_I: Mad3/BUB 31.7 2.9E+02 0.0063 22.7 9.0 43 195-237 81-123 (126)
439 KOG4642 Chaperone-dependent E3 30.3 4.6E+02 0.0099 24.5 11.5 114 121-238 24-142 (284)
440 PF11817 Foie-gras_1: Foie gra 30.1 2.4E+02 0.0052 26.4 7.7 21 429-449 184-204 (247)
441 COG0735 Fur Fe2+/Zn2+ uptake r 29.5 3.4E+02 0.0074 22.9 7.7 64 445-509 8-71 (145)
442 COG2909 MalT ATP-dependent tra 29.4 8.7E+02 0.019 27.5 31.5 88 259-346 426-525 (894)
443 COG5108 RPO41 Mitochondrial DN 29.4 5.9E+02 0.013 27.7 10.5 75 323-400 33-115 (1117)
444 KOG2297 Predicted translation 28.3 5.6E+02 0.012 24.9 20.7 66 262-337 269-340 (412)
445 KOG2062 26S proteasome regulat 28.3 8.5E+02 0.018 27.0 24.4 24 288-311 215-238 (929)
446 PF09454 Vps23_core: Vps23 cor 28.1 1.7E+02 0.0036 20.8 4.6 27 111-137 12-38 (65)
447 PF14432 DYW_deaminase: DYW fa 27.9 24 0.00052 28.6 0.5 10 588-601 2-11 (116)
448 KOG2582 COP9 signalosome, subu 27.7 6.3E+02 0.014 25.2 17.0 53 434-486 288-344 (422)
449 KOG4567 GTPase-activating prot 27.4 5.8E+02 0.013 24.8 9.6 56 409-469 264-319 (370)
450 PRK11639 zinc uptake transcrip 27.0 4.3E+02 0.0092 23.1 8.4 60 450-510 18-77 (169)
451 PF09454 Vps23_core: Vps23 cor 26.9 1.2E+02 0.0025 21.6 3.7 49 140-189 6-54 (65)
452 cd08819 CARD_MDA5_2 Caspase ac 26.6 2.9E+02 0.0063 21.0 7.5 14 156-169 50-63 (88)
453 PF10475 DUF2450: Protein of u 26.3 6E+02 0.013 24.6 10.3 23 281-303 195-217 (291)
454 KOG0551 Hsp90 co-chaperone CNS 26.0 3.4E+02 0.0074 26.6 7.6 93 390-484 83-179 (390)
455 PF10255 Paf67: RNA polymerase 25.7 3.6E+02 0.0077 27.5 8.2 99 71-169 74-191 (404)
456 PF09986 DUF2225: Uncharacteri 25.7 5.2E+02 0.011 23.6 11.5 62 427-488 122-195 (214)
457 smart00804 TAP_C C-terminal do 25.6 56 0.0012 23.0 1.9 21 192-212 40-60 (63)
458 PF10475 DUF2450: Protein of u 25.4 6.2E+02 0.014 24.4 10.3 25 490-514 194-218 (291)
459 COG4941 Predicted RNA polymera 25.4 6.7E+02 0.014 24.8 11.8 115 158-277 272-394 (415)
460 PF09477 Type_III_YscG: Bacter 25.2 3.5E+02 0.0077 21.5 8.9 8 330-337 52-59 (116)
461 PRK09462 fur ferric uptake reg 24.7 4.3E+02 0.0093 22.3 8.2 60 449-509 8-68 (148)
462 KOG3807 Predicted membrane pro 24.5 6.7E+02 0.015 24.5 15.4 17 400-416 287-303 (556)
463 KOG3364 Membrane protein invol 24.5 4.3E+02 0.0092 22.2 10.4 64 423-486 32-99 (149)
464 PRK13800 putative oxidoreducta 24.4 1.1E+03 0.025 27.2 32.3 249 245-522 632-881 (897)
465 KOG4814 Uncharacterized conser 24.2 9E+02 0.02 26.3 10.7 92 356-450 358-455 (872)
466 PHA02537 M terminase endonucle 24.0 5.8E+02 0.013 23.6 9.7 49 391-455 67-115 (230)
467 KOG2659 LisH motif-containing 23.8 5.8E+02 0.013 23.5 10.1 63 210-274 23-90 (228)
468 cd08819 CARD_MDA5_2 Caspase ac 23.6 3.3E+02 0.0072 20.7 7.4 64 443-512 22-85 (88)
469 cd07153 Fur_like Ferric uptake 23.3 2.5E+02 0.0054 22.4 5.8 46 464-509 6-51 (116)
470 KOG0889 Histone acetyltransfer 23.3 2E+03 0.043 29.6 22.5 22 183-204 2488-2509(3550)
471 PF03745 DUF309: Domain of unk 23.1 2.7E+02 0.0059 19.5 5.4 19 82-100 9-27 (62)
472 COG5108 RPO41 Mitochondrial DN 22.7 5.9E+02 0.013 27.6 9.1 75 112-189 33-115 (1117)
473 PF09868 DUF2095: Uncharacteri 22.4 3.7E+02 0.0081 21.5 5.9 31 394-425 67-97 (128)
474 KOG2297 Predicted translation 22.4 7.3E+02 0.016 24.1 20.3 21 423-443 321-341 (412)
475 PF01475 FUR: Ferric uptake re 22.1 2.5E+02 0.0055 22.6 5.5 47 463-509 12-58 (120)
476 PF15297 CKAP2_C: Cytoskeleton 21.9 7.1E+02 0.015 24.7 9.0 66 439-506 119-188 (353)
477 COG4259 Uncharacterized protei 21.8 3.9E+02 0.0085 20.9 6.4 20 429-448 78-97 (121)
478 PF02607 B12-binding_2: B12 bi 21.6 2.3E+02 0.0051 20.6 4.8 34 84-117 13-46 (79)
479 PF02184 HAT: HAT (Half-A-TPR) 21.6 1.9E+02 0.0042 17.1 3.4 12 440-451 4-15 (32)
480 cd07153 Fur_like Ferric uptake 21.1 2.7E+02 0.0059 22.1 5.5 45 78-122 6-50 (116)
481 KOG4814 Uncharacterized conser 20.9 7.8E+02 0.017 26.7 9.5 86 398-485 364-455 (872)
482 COG4003 Uncharacterized protei 20.4 3.7E+02 0.008 20.0 5.5 25 394-418 37-61 (98)
483 COG5191 Uncharacterized conser 20.2 2.8E+02 0.006 26.9 5.7 79 68-148 103-182 (435)
484 PF12793 SgrR_N: Sugar transpo 20.2 4.7E+02 0.01 21.1 7.0 62 455-518 16-95 (115)
485 PF04090 RNA_pol_I_TF: RNA pol 20.1 6.1E+02 0.013 22.9 7.7 26 145-170 44-69 (199)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.5e-80 Score=692.18 Aligned_cols=526 Identities=17% Similarity=0.239 Sum_probs=502.8
Q ss_pred ccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 006640 67 ESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
+..+++.++|.|+.+|++.|++++|.++|++|. .||..+||++|.+|++.|++++|..+|.+|.+.|+.||..+|+
T Consensus 217 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~ 292 (857)
T PLN03077 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292 (857)
T ss_pred CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHH
Confidence 345788899999999999999999999999995 5799999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 006640 147 AVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNE 226 (637)
Q Consensus 147 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 226 (637)
.++.+|++.|+++.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|. .||..+|++++.+|++.
T Consensus 293 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGYEKN 367 (857)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999996 37899999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 006640 227 KNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFA 306 (637)
Q Consensus 227 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 306 (637)
|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.|+++|++.|++++|.++|
T Consensus 368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 006640 307 RTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKP 386 (637)
Q Consensus 307 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 386 (637)
++|. .+|..+|+.++.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++.|.++.+.+++..+.+.|+.+
T Consensus 448 ~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~ 522 (857)
T PLN03077 448 HNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF 522 (857)
T ss_pred HhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc
Confidence 9997 57889999999999999999999999999986 589999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006640 387 DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMW 466 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 466 (637)
|..++++|+++|+++|++++|.++|+.+ .||..+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 597 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC 597 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Confidence 9999999999999999999999999987 68999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc----------cccccccch
Q 006640 467 GYSEARQPWRAEEILQIMK-AFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERTN----------EMEAEEDIP 535 (637)
Q Consensus 467 ~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~----------~~~~~~~~a 535 (637)
+|++.|++++|.++|++|. ++|+.|+..||.+++++|+++|++++|.+++++|+.. |+. ..+++.++|
T Consensus 598 a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~-pd~~~~~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 598 ACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPIT-PDPAVWGALLNACRIHRHVELG 676 (857)
T ss_pred HHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCChHHH
Confidence 9999999999999999998 7999999999999999999999999999999999633 221 347899999
Q ss_pred HHHHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhhhccccccCcccchhhhhcchhhhhccccCCCCCceeccc
Q 006640 536 VESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDADSSLECSWFATTSMYLSHSCKSGARLPIICQK 615 (637)
Q Consensus 536 ~~~~e~l~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~~~~k~~g~swi~~~~~~h~~~~~~~~~~~~~~~~ 615 (637)
+.+++++++++|++.++ |++|+|+|+..|+|++|.++|+.|+++|++|.|||||||++|++|. |+.+|
T Consensus 677 e~~a~~l~~l~p~~~~~--y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~----------f~~~d 744 (857)
T PLN03077 677 ELAAQHIFELDPNSVGY--YILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHA----------FLTDD 744 (857)
T ss_pred HHHHHHHHhhCCCCcch--HHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEE----------EecCC
Confidence 99999999999998774 7899999999999999999999999999999999999999999999 67788
Q ss_pred cCCcccccc
Q 006640 616 QPLGQVGMY 624 (637)
Q Consensus 616 ~~~~~~~~~ 624 (637)
++||+++..
T Consensus 745 ~~h~~~~~i 753 (857)
T PLN03077 745 ESHPQIKEI 753 (857)
T ss_pred CCCcchHHH
Confidence 999998643
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-72 Score=614.32 Aligned_cols=503 Identities=20% Similarity=0.302 Sum_probs=422.9
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 006640 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGG-HKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAV 148 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (637)
.+..+|+.++..|.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 455688888888888888888888888887654 5788888888888888888888888888888888888888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 006640 149 INAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN 228 (637)
Q Consensus 149 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 228 (637)
+.+|++.|+++.|.++|++|.+ ||..+|++++.+|++.|++++|+++|++|.+.| +.|+..+|+.++.+|++.|.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g-~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDG-SDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCChhhHHHHHHHHhcCCc
Confidence 8888888888888888888864 688888888888888888888888888888776 67888888888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 006640 229 ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFART 308 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 308 (637)
.+.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|.. +|..+||.|+.+|++.|++++|+++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888753 5778888888888888888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 006640 309 MKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA 388 (637)
Q Consensus 309 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 388 (637)
|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+++.|+.+|++.|++++|.++|++|. .||.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCe
Confidence 888888888888888888888888888888888888888888888888888888888888888888888875 3677
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHH
Q 006640 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE-HGVSPNLKTFETLMWG 467 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~ 467 (637)
.+|++||.+|++.|+.++|.++|++|.+.|+.||..||++++.+|++.|.+++|.++|++|.+ .|+.|+..+|+.++.+
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888875 5888888888888888
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccccccccccchHHHHHHHHhhhc
Q 006640 468 YSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERTNEMEAEEDIPVESLERLYHKEA 547 (637)
Q Consensus 468 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~a~~~~e~l~~~~~ 547 (637)
|++.|++++|.+++++| ++.|+..+|..++.+|...|+++.|..+++++ ++++|
T Consensus 472 l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l-----------------------~~~~p 525 (697)
T PLN03081 472 LGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKL-----------------------YGMGP 525 (697)
T ss_pred HHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH-----------------------hCCCC
Confidence 88888888888887654 57788888888888888888777777666554 44567
Q ss_pred cCCCCCCcccccccccccCCCchhhhhhhhccccccCcccchhhhhcchhhhhccccCCCCCceeccccCCccccc
Q 006640 548 TTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDADSSLECSWFATTSMYLSHSCKSGARLPIICQKQPLGQVGM 623 (637)
Q Consensus 548 ~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~~~~k~~g~swi~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 623 (637)
++.. .|+.|+++|++.|+|++|.++++.|+++|++|.|||||||+++++|. |+.++++||+.+.
T Consensus 526 ~~~~--~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~----------f~~~d~~h~~~~~ 589 (697)
T PLN03081 526 EKLN--NYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHS----------FFSGDRLHPQSRE 589 (697)
T ss_pred CCCc--chHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEE----------EccCCCCCccHHH
Confidence 6543 35889999999999999999999999999999999999999999999 6677799998753
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.6e-64 Score=551.93 Aligned_cols=509 Identities=20% Similarity=0.297 Sum_probs=455.3
Q ss_pred cCcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 006640 68 SCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGH-KPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
..++...|..+++.+++.|++++|+++|++|...|+ .++..+++.++.+|.+.|..++|..+++.|.. ||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 446788899999999999999999999999999886 46788888999999999999999999998863 8999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 006640 147 AVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNE 226 (637)
Q Consensus 147 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 226 (637)
.++.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.| +.||..+|+.||.+|++.
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-v~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-VEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999999999999999887 789999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 006640 227 KNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEH--NGVQPNGRTCGIIISGYCKEGKIKEALR 304 (637)
Q Consensus 227 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~ 304 (637)
|++++|+++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .++.||..+|+.++.+|++.|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999976 6789999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 006640 305 FARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGI 384 (637)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 384 (637)
+|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006640 385 KPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETL 464 (637)
Q Consensus 385 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 464 (637)
.||..+|++|+.+|+++|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|+++|++|.+.|+.||..||+.+
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c-------------------CCHHHHHHHHHHHhh
Q 006640 465 MWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRA----T-------------------GLTKEAKRILSKIKN 521 (637)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~-------------------g~~~eA~~~~~~~~~ 521 (637)
+.+|++.|++++|.++|++|.+.|+.||..+|+++++.|.+ + +..++|..+|++|..
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999877542 1 235799999999986
Q ss_pred ccc--cc----------cccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCC-chhhhhhhhccccccCc
Q 006640 522 KER--TN----------EMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKG-SAAALKKGRMLLRDADS 585 (637)
Q Consensus 522 ~~~--~~----------~~~~~~~~a~~~~e~l~~~~~~~~~y~~~~~L~~~y~~~g~~-~~a~~~r~~~~~~~~~k 585 (637)
... +. ...+..+.+..+.+.+. ..|....|.+|..|-+.+ |++ ++|..+.+.|..+|+.-
T Consensus 841 ~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p 913 (1060)
T PLN03218 841 AGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG-ISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVP 913 (1060)
T ss_pred CCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc-cCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCC
Confidence 632 11 01122233323333221 234333333344444433 444 48999999999999854
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.5e-62 Score=536.37 Aligned_cols=446 Identities=20% Similarity=0.327 Sum_probs=361.1
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006640 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVI 149 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 149 (637)
++...++.++..|.+.|..++|+.+|+.|.. ||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.||
T Consensus 404 ~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI 479 (1060)
T PLN03218 404 MDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLI 479 (1060)
T ss_pred chHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4566667777778888888888888877753 788888888888888888888888888888888888888888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 006640 150 NAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNI 229 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 229 (637)
.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|...+ +.||..+|+.|+.+|++.|++
T Consensus 480 ~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G-v~PD~vTYnsLI~a~~k~G~~ 558 (1060)
T PLN03218 480 STCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN-VKPDRVVFNALISACGQSGAV 558 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCH
Confidence 8888888888888888888888888888888888888888888888888888887766 778888888888888888888
Q ss_pred HHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 006640 230 TEAWNVMHKMAA--SGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFAR 307 (637)
Q Consensus 230 ~~A~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 307 (637)
++|.++|++|.. .|+.||..+|++|+.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|+
T Consensus 559 deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~ 638 (1060)
T PLN03218 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD 638 (1060)
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 888888888865 567788888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 006640 308 TMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD 387 (637)
Q Consensus 308 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 387 (637)
+|.+.|+.||..+|+.++.+|++.|+.++|.++++.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 639 eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd 718 (1060)
T PLN03218 639 DMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT 718 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888887778888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006640 388 AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWG 467 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 467 (637)
..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|++++.+|++.|++++|.++|++|.+.|+.||..+|++++..
T Consensus 719 vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIgl 798 (1060)
T PLN03218 719 VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL 798 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888887765
Q ss_pred HHh----c-------------------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006640 468 YSE----A-------------------RQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 468 ~~~----~-------------------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
|.+ . +..++|..+|++|.+.|+.||..+|..++..++..+..+.+..+++.|.
T Consensus 799 c~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~ 874 (1060)
T PLN03218 799 CLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG 874 (1060)
T ss_pred HHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc
Confidence 432 1 2246788888888888888888888888877777777777777777764
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.7e-62 Score=541.64 Aligned_cols=440 Identities=20% Similarity=0.285 Sum_probs=338.0
Q ss_pred cCcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 006640 68 SCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNA 147 (637)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 147 (637)
..+++++||.++.+|++.|++++|+++|++|...|+.||.+||+.++++|+..+++..+.+++..+.+.|+.||..+++.
T Consensus 148 ~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ 227 (857)
T PLN03077 148 PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227 (857)
T ss_pred CCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhH
Confidence 34677888888888888888888888888888878888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 006640 148 VINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEK 227 (637)
Q Consensus 148 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g 227 (637)
|+.+|+++|+++.|.++|++|.+ ||..+||+||.+|++.|++++|+++|++|...| +.||..||+.++.+|++.|
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELS-VDPDLMTITSVISACELLG 302 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcC
Confidence 88888888888888888888764 577788888888888888888888888887776 7788888888888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 006640 228 NITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFAR 307 (637)
Q Consensus 228 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 307 (637)
+.+.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|+
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~ 378 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYA 378 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888775 3677788888888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 006640 308 TMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD 387 (637)
Q Consensus 308 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 387 (637)
+|.+.|+.||..+|+.++.+|++.|+.+.+.++++.+.+.|..++..+++.|+.+|++.|++++|.++|++|.+ +|
T Consensus 379 ~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d 454 (857)
T PLN03077 379 LMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KD 454 (857)
T ss_pred HHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CC
Confidence 88888888888888888888888888888888888888888778888888888888888888888888877753 46
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------------
Q 006640 388 AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGV------------- 454 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------------- 454 (637)
..+|++++.+|++.|+.++|..+|++|.. +++||..||++++.+|++.|+.+.+.+++..+.+.|+
T Consensus 455 ~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~ 533 (857)
T PLN03077 455 VISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533 (857)
T ss_pred eeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH
Confidence 66777777777777777777777777765 3567777666666555544444444444444443333
Q ss_pred -----------------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006640 455 -----------------SPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILS 517 (637)
Q Consensus 455 -----------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~ 517 (637)
.||..+|++++.+|++.|+.++|.++|++|.+.|+.||..||..++.+|.+.|++++|.++|+
T Consensus 534 y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~ 613 (857)
T PLN03077 534 YVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH 613 (857)
T ss_pred HHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHH
Confidence 356666777777777777777777777777777777777777777777777777777777777
Q ss_pred HHhh
Q 006640 518 KIKN 521 (637)
Q Consensus 518 ~~~~ 521 (637)
.|..
T Consensus 614 ~M~~ 617 (857)
T PLN03077 614 SMEE 617 (857)
T ss_pred HHHH
Confidence 7753
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.3e-59 Score=508.70 Aligned_cols=440 Identities=18% Similarity=0.269 Sum_probs=416.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006640 104 KPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENG-MDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNT 182 (637)
Q Consensus 104 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 182 (637)
.++..+|+.+|.++.+.|++++|.++|+.|...+ +.||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4567789999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 006640 183 LIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNG 262 (637)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 262 (637)
|+.+|++.|++++|.++|++|.+ ||..+|++++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 99999999999999999999963 7999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 006640 263 EADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLA 342 (637)
Q Consensus 263 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 342 (637)
..+.+.+++..+.+.|+.+|..++++|+++|+++|++++|.++|+.|. .+|..+|+.++.+|++.|+.++|.++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999996 6799999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 006640 343 LMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPN 422 (637)
Q Consensus 343 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 422 (637)
.|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|+++|++++|.++|++|. .||
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d 390 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKN 390 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 589
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHH
Q 006640 423 VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA-FGVHPQKSTFLLLAE 501 (637)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~ 501 (637)
..+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|+++++
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999974 799999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhccccccccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhhhcccc
Q 006640 502 ARRATGLTKEAKRILSKIKNKERTNEMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLR 581 (637)
Q Consensus 502 ~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~a~~~~e~l~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~ 581 (637)
+|+++|++++|.+++++|+. .|+...| ..|.+.+...|+.+.|.++-+.+.+.
T Consensus 471 ~l~r~G~~~eA~~~~~~~~~------------------------~p~~~~~---~~Ll~a~~~~g~~~~a~~~~~~l~~~ 523 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRAPF------------------------KPTVNMW---AALLTACRIHKNLELGRLAAEKLYGM 523 (697)
T ss_pred HHHhcCCHHHHHHHHHHCCC------------------------CCCHHHH---HHHHHHHHHcCCcHHHHHHHHHHhCC
Confidence 99999999999999988742 2443333 55677889999999999888777654
Q ss_pred cc
Q 006640 582 DA 583 (637)
Q Consensus 582 ~~ 583 (637)
+.
T Consensus 524 ~p 525 (697)
T PLN03081 524 GP 525 (697)
T ss_pred CC
Confidence 44
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.3e-30 Score=297.69 Aligned_cols=496 Identities=12% Similarity=0.047 Sum_probs=361.5
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006640 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA 151 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 151 (637)
...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +........++..
T Consensus 363 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 440 (899)
T TIGR02917 363 PAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILS 440 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHH
Confidence 4445555555555555555555555555432 2244445555555555555555555555555443 2233344445555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006640 152 FSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITE 231 (637)
Q Consensus 152 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 231 (637)
+.+.|++++|..+++.+.... +++..++..+...|...|++++|.+.|+++.+.. +.+...+..++..+...|++++
T Consensus 441 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 441 YLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHH
Confidence 666666666666666665543 2356677777777777777777777777776653 4456667777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 232 AWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 232 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
|.+.++++...+ +.+..++..+...+.+.|+.++|..+++++...+. .+...+..++..|.+.|++++|..+++.+.+
T Consensus 518 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 518 AIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 877777777654 34566777777778888888888888887766543 4556677788888888888888888888876
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 006640 312 YGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAY 391 (637)
Q Consensus 312 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 391 (637)
.. +.+...|..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|..+++++.+.. +.+..++
T Consensus 596 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 672 (899)
T TIGR02917 596 AA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQ 672 (899)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 54 5567788888888888888888888888887754 3466777788888888888888888888887753 4467788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006640 392 SILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEA 471 (637)
Q Consensus 392 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 471 (637)
..++..+...|++++|..+++.+.+.. +++...+..++..+...|++++|+..|+++...+ |+..++..++.++.+.
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 749 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLAS 749 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHC
Confidence 888888888888888888888888775 6677788888888899999999999999988754 5557777888889999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccc-----------ccccccchHHHHH
Q 006640 472 RQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERTNE-----------MEAEEDIPVESLE 540 (637)
Q Consensus 472 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~-----------~~~~~~~a~~~~e 540 (637)
|++++|.+.++++.+.. ..+...+..++.++...|++++|...++++....|.+. ..++ +.|...++
T Consensus 750 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 750 GNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 99999999998887633 23566788888999999999999999999987766431 2344 56888999
Q ss_pred HHHhhhccCCCCCCcccccccccccCCCchhhhhhhhccccccC
Q 006640 541 RLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDAD 584 (637)
Q Consensus 541 ~l~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~~~~ 584 (637)
+++++.|++.. .+..++.+|...|++++|....+.+.+.+..
T Consensus 828 ~~~~~~~~~~~--~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 828 KALKLAPNIPA--ILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHhhCCCCcH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99998888766 3567899999999999999999888877764
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.4e-30 Score=295.49 Aligned_cols=494 Identities=13% Similarity=0.092 Sum_probs=430.0
Q ss_pred CcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 006640 69 CRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAV 148 (637)
Q Consensus 69 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (637)
+.+...+..+...+...|++++|+..|+.+..... .+......++..+.+.|++++|..+++.+.... +.+..++..+
T Consensus 394 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 471 (899)
T TIGR02917 394 PENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLL 471 (899)
T ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHH
Confidence 34667788889999999999999999999987542 244566677888999999999999999998764 6788899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 006640 149 INAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN 228 (637)
Q Consensus 149 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 228 (637)
...|...|++++|...|+++.+..+. +...+..+...+...|++++|.+.|+++.... +.+..++..+...+.+.|+
T Consensus 472 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 548 (899)
T TIGR02917 472 GAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGN 548 (899)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCC
Confidence 99999999999999999999887543 67788889999999999999999999998864 5678899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 006640 229 ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFART 308 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 308 (637)
.++|..+++++...+ +.+...+..++..+...|++++|..+++.+.+.. +.+...|..+..+|.+.|++++|+..|++
T Consensus 549 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 626 (899)
T TIGR02917 549 EEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKK 626 (899)
T ss_pred HHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998765 4567788889999999999999999999998754 35678899999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 006640 309 MKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA 388 (637)
Q Consensus 309 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 388 (637)
+.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..++..+...|++++|..+++.+.+.. +.+.
T Consensus 627 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 703 (899)
T TIGR02917 627 LLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAA 703 (899)
T ss_pred HHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCh
Confidence 98765 5577889999999999999999999999998865 3468889999999999999999999999998875 5578
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006640 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGY 468 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 468 (637)
..+..+...+.+.|++++|...|+++.+. .|+..++..++.++...|++++|.+.++++.+... .+...+..+...|
T Consensus 704 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~ 780 (899)
T TIGR02917 704 LGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELY 780 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 88899999999999999999999999986 45557888899999999999999999999998643 4778899999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc-----------cccccccchHH
Q 006640 469 SEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERTN-----------EMEAEEDIPVE 537 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~-----------~~~~~~~~a~~ 537 (637)
...|+.++|...|+++.+... ++...+..++.++...|+ .+|+.+++++....+.+ ...++.+.|..
T Consensus 781 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 858 (899)
T TIGR02917 781 LAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALP 858 (899)
T ss_pred HHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999987432 356688899999999999 88999999998776543 13577888999
Q ss_pred HHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhhhcc
Q 006640 538 SLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRML 579 (637)
Q Consensus 538 ~~e~l~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~ 579 (637)
.+++++++.|.+.. .+..++.+|...|++++|..+-+.|.
T Consensus 859 ~~~~a~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 859 LLRKAVNIAPEAAA--IRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHhhCCCChH--HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 99999999887654 46789999999999999998887764
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=1e-22 Score=233.40 Aligned_cols=498 Identities=11% Similarity=0.053 Sum_probs=285.1
Q ss_pred CcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHH----------------HHHHHHHHhcCChhHHHHHHHH
Q 006640 69 CRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTY----------------TTLLAALTIQKRFNSIHSIMSQ 132 (637)
Q Consensus 69 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------------~~ll~~~~~~~~~~~a~~~~~~ 132 (637)
+.++..+..++..+.+.|+.++|.+.++++.+.. +.+.... ..+.+.+...|++++|...|++
T Consensus 59 p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~ 137 (1157)
T PRK11447 59 PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDK 137 (1157)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4456677778888888999999999999888753 2233322 2234467788899999999988
Q ss_pred HHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--
Q 006640 133 VEENGMDPDSIFF-NAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNV-- 209 (637)
Q Consensus 133 ~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-- 209 (637)
+.+.+ +++...- ..+.......|+.++|+..++++.+..+. +...+..+...+...|+.++|++.++++......
T Consensus 138 ~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~ 215 (1157)
T PRK11447 138 LFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRD 215 (1157)
T ss_pred HccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchH
Confidence 88654 4443221 11122223458888899999888887543 6677888888888888888888888887543200
Q ss_pred -------------CCC---HHHH----------------------------------HHHHHHHHhcCCHHHHHHHHHHH
Q 006640 210 -------------KPN---LRTY----------------------------------NVLVRAWCNEKNITEAWNVMHKM 239 (637)
Q Consensus 210 -------------~~~---~~~~----------------------------------~~li~~~~~~g~~~~A~~~~~~~ 239 (637)
+++ ...+ ......+...|++++|+..|++.
T Consensus 216 ~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~a 295 (1157)
T PRK11447 216 AAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQA 295 (1157)
T ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 000 0000 01134456678888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hhhH------------HHHHHHHHHcCCHHHHHHHH
Q 006640 240 AASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPN-GRTC------------GIIISGYCKEGKIKEALRFA 306 (637)
Q Consensus 240 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~------------~~li~~~~~~g~~~~A~~~~ 306 (637)
++.. +.+...+..+..++.+.|++++|+..|++..+...... ...| ......+.+.|++++|+..|
T Consensus 296 L~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~ 374 (1157)
T PRK11447 296 VRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLY 374 (1157)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8763 33677788888888888888888888888876543211 1111 12244567788888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH------------------------
Q 006640 307 RTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNA------------------------ 362 (637)
Q Consensus 307 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~------------------------ 362 (637)
+++.+.. +.+...+..+...+...|++++|++.|+++.+..+ .+...+..+...
T Consensus 375 ~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~ 452 (1157)
T PRK11447 375 QQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSI 452 (1157)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHH
Confidence 8887764 44566777788888888888888888888776542 233333333333
Q ss_pred ------------------HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 006640 363 ------------------WSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVV 424 (637)
Q Consensus 363 ------------------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 424 (637)
+...|++++|++.+++.++.. +.+...+..+...|.+.|++++|...++++.+.. +.+..
T Consensus 453 ~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~ 530 (1157)
T PRK11447 453 DDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPE 530 (1157)
T ss_pred HHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHH
Confidence 334455555555555555442 2234444555555555555555555555555432 22333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 006640 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNL---------KTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKST 495 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 495 (637)
.+..+...+...|+.++|+..++++......++. ..+..+...+...|+.++|..+++. ..++...
T Consensus 531 ~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~ 605 (1157)
T PRK11447 531 QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRI 605 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchH
Confidence 3333333333344444444443332111000000 0011122233334444444443331 1122334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhccccc-----------cccccccchHHHHHHHHhhhccCCCCCCcccccccccc
Q 006640 496 FLLLAEARRATGLTKEAKRILSKIKNKERTN-----------EMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSS 564 (637)
Q Consensus 496 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~-----------~~~~~~~~a~~~~e~l~~~~~~~~~y~~~~~L~~~y~~ 564 (637)
+..+.+++.+.|++++|+..++++....|++ ...++.+.|...++++++..|++.. ....++.+|..
T Consensus 606 ~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~--~~~~la~~~~~ 683 (1157)
T PRK11447 606 DLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLN--TQRRVALAWAA 683 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChH--HHHHHHHHHHh
Confidence 4455555666666666666666665554442 1234455555555555555554433 23445555666
Q ss_pred cCCCchhhhhhhhcccc
Q 006640 565 DQKGSAAALKKGRMLLR 581 (637)
Q Consensus 565 ~g~~~~a~~~r~~~~~~ 581 (637)
.|++++|....+.....
T Consensus 684 ~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 684 LGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CCCHHHHHHHHHHHhhh
Confidence 66666666555554433
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=2.3e-22 Score=230.50 Aligned_cols=489 Identities=12% Similarity=0.059 Sum_probs=354.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006640 76 TKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLV-TYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE 154 (637)
Q Consensus 76 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 154 (637)
..+...+.+.|++++|++.|+.+...+ +|+.. ............|+.++|+..++++.+.. +.+...+..+...+..
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~ 193 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFS 193 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHc
Confidence 445567888899999999999988743 33432 11112222234588899999999988875 6677788888888888
Q ss_pred cCCHHHHHHHHHHHHHCCC------------------C--------------CCHHHH---------------------H
Q 006640 155 SGNMEEAMDTFWKMKESGL------------------T--------------PTTSTY---------------------N 181 (637)
Q Consensus 155 ~g~~~~A~~~~~~m~~~~~------------------~--------------~~~~~~---------------------~ 181 (637)
.|+.++|+..++++.+... . |+.... .
T Consensus 194 ~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~ 273 (1157)
T PRK11447 194 SGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRAR 273 (1157)
T ss_pred cCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHH
Confidence 8999999998888754321 0 000000 0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHH---------
Q 006640 182 TLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKP-DVVTY--------- 251 (637)
Q Consensus 182 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~--------- 251 (637)
.....+...|++++|+..|++..+.. |.+...+..+...+.+.|++++|+..|++..+..... ....|
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 11344567789999999999988864 5578888999999999999999999999988754221 11112
Q ss_pred ---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-----
Q 006640 252 ---NTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNL----- 323 (637)
Q Consensus 252 ---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----- 323 (637)
..+...+.+.|++++|...|+++.+... .+...+..+...+...|++++|++.|+++.+.. +.+...+..
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 1224566788999999999999887643 456677788889999999999999999988653 223333322
Q ss_pred -------------------------------------HHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 006640 324 -------------------------------------LIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTA 366 (637)
Q Consensus 324 -------------------------------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 366 (637)
+...+...|++++|.+.+++..+..+ .+...+..+...|.+.
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQA 508 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 22334567899999999999988753 3667788899999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHhcC
Q 006640 367 GFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVV---------IFTTIISGWCSDG 437 (637)
Q Consensus 367 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~li~~~~~~g 437 (637)
|++++|+..++++.+.. +.+...+..+...+...++.++|+..++.+......++.. .+..+...+...|
T Consensus 509 G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 99999999999998754 3456666666666788999999999998875432222221 1234566788899
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 006640 438 SMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 438 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~ 516 (637)
+.++|+.+++. .+++...+..+...+...|+.++|+..|++..+ ..|+ ...+..++.++...|++++|+..+
T Consensus 588 ~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 588 KEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred CHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999998872 234566777888899999999999999999887 3454 567888999999999999999999
Q ss_pred HHHhhccccc-----------cccccccchHHHHHHHHhhhccCCC----CCCcccccccccccCCCchhhhhhhhcc
Q 006640 517 SKIKNKERTN-----------EMEAEEDIPVESLERLYHKEATTAS----YPNLLQIPNVVSSDQKGSAAALKKGRML 579 (637)
Q Consensus 517 ~~~~~~~~~~-----------~~~~~~~~a~~~~e~l~~~~~~~~~----y~~~~~L~~~y~~~g~~~~a~~~r~~~~ 579 (637)
++++...|++ ...++.+.|...++++++..|++.. ...+..++.+|...|++++|....+...
T Consensus 661 ~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 661 AKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9887765542 1356778888889999886554322 0123346889999999999998866553
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=1.5e-22 Score=196.49 Aligned_cols=433 Identities=15% Similarity=0.114 Sum_probs=330.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006640 75 MTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE 154 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 154 (637)
...|.....+.|++.+|.+.-...-..+ +.+......+-..+.+..+++....--....+.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4567788889999999998766554432 2233333333344555555555444333333332 4557788888888989
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHH-HHHHHHHHHhcCCHHHHH
Q 006640 155 SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRT-YNVLVRAWCNEKNITEAW 233 (637)
Q Consensus 155 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~ 233 (637)
.|++++|+.+++.+.+..+. ....|..+..++...|+.+.|.+.|.+..+.+ |+... .+.+....-..|++.+|.
T Consensus 129 rg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln---P~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN---PDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred hchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC---cchhhhhcchhHHHHhhcccchhH
Confidence 99999999999999887644 67788888999999999999999888888753 55444 344555556688889998
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 234 NVMHKMAASGMKPD-VVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPN-GRTCGIIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 234 ~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
..+.+.++. .|. .+.|+.|...+-..|+...|+..|++.++. +|+ ...|..|...|...+.+++|+..|.+...
T Consensus 205 ~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~ 280 (966)
T KOG4626|consen 205 ACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALN 280 (966)
T ss_pred HHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh
Confidence 888888765 333 467888888888889999999999888775 344 56788888888888999999988888876
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 006640 312 YGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAY 391 (637)
Q Consensus 312 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 391 (637)
.. +...+.+..+...|-..|..+.|+..+++.++..+ .-...|+.|..++-..|++.+|.+.+.+.+... +....+.
T Consensus 281 lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam 357 (966)
T KOG4626|consen 281 LR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAM 357 (966)
T ss_pred cC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHH
Confidence 53 33456777788888888999999999988887652 246788889999888999999999998888763 3356778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHh
Q 006640 392 SILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK-TFETLMWGYSE 470 (637)
Q Consensus 392 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~ 470 (637)
+.|...|...|.+++|..+|....+.. +.=....+.|...|-++|++++|+..|++.++ +.|+.. .|+.+...|-.
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHH
Confidence 888899999999999999998888752 33346788888889999999999999998887 667754 78888888989
Q ss_pred cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 006640 471 ARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 471 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
.|+++.|++.+.+... +.|. .+..+.+..++..+|++.+|+.-++.+....|+
T Consensus 435 ~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred hhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 9999999998888776 6677 457888888999999999998888888766654
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=5.5e-22 Score=192.61 Aligned_cols=444 Identities=10% Similarity=0.065 Sum_probs=359.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006640 110 YTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI 189 (637)
Q Consensus 110 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 189 (637)
...|..-..+.|++.+|.+.-...-..+ +.+....-.+-..+....+.+.....-....+... .-..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~-q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNP-QGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccc-hHHHHHHHHHHHHHH
Confidence 4455666678899999987654444332 33334444444566666777766554444444332 257799999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHH
Q 006640 190 AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYN-TIATAYAQNGEADQAE 268 (637)
Q Consensus 190 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~ 268 (637)
.|+++.|+.+++.+.+.. +..+..|..+..++...|+.+.|...|.+.++. .|+..... .+....-..|++++|.
T Consensus 129 rg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred hchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence 999999999999999864 456889999999999999999999999999875 56655443 4555666789999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 006640 269 EVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR 348 (637)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 348 (637)
..|.+.++... --...|+.|...+...|+...|++.|++..+.. +.=...|-.+...|...+.++.|...+.......
T Consensus 205 ~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 205 ACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 99998887632 235789999999999999999999999998764 2235689999999999999999999999887765
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006640 349 VNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTT 428 (637)
Q Consensus 349 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 428 (637)
+ .....+..+...|-..|.++.|+..+++.++.. +.-...|+.|..++-..|+..+|...+++..... +....+.+.
T Consensus 283 p-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~N 359 (966)
T KOG4626|consen 283 P-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNN 359 (966)
T ss_pred C-cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHH
Confidence 2 356778888888999999999999999999864 3347899999999999999999999999999873 455678999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHc
Q 006640 429 IISGWCSDGSMDRAIEVFDKMCEHGVSPNL-KTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK-STFLLLAEARRAT 506 (637)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~ 506 (637)
|...|...|.+++|..+|+...+ +.|.- ..++.|...|-+.|++++|+..+++... +.|+. ..|+.+...|...
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHh
Confidence 99999999999999999999998 44654 4799999999999999999999999887 89995 4899999999999
Q ss_pred CCHHHHHHHHHHHhhccccc-----------cccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCCch
Q 006640 507 GLTKEAKRILSKIKNKERTN-----------EMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSA 570 (637)
Q Consensus 507 g~~~eA~~~~~~~~~~~~~~-----------~~~~~~~~a~~~~e~l~~~~~~~~~y~~~~~L~~~y~~~g~~~~ 570 (637)
|+.++|...+.++...+|.- ..-++...|...++.++.+.||... ++.+|.-...-...|.+
T Consensus 436 g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd--A~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD--AYCNLLHCLQIVCDWTD 508 (966)
T ss_pred hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch--hhhHHHHHHHHHhcccc
Confidence 99999999999998765531 2347889999999999999998765 45777766666677776
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=7.1e-19 Score=189.56 Aligned_cols=432 Identities=12% Similarity=0.020 Sum_probs=298.6
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006640 73 RSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAF 152 (637)
Q Consensus 73 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 152 (637)
..+..+.+.+.+.|++++|+..|++.+. ..|+...|..+..+|...|++++|+..+.+.++.. +.+...+..+..+|
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 3456778889999999999999999987 46788889999999999999999999999999875 56778899999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006640 153 SESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEA 232 (637)
Q Consensus 153 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A 232 (637)
...|++++|+..|..+...+...+.. ...++..+.. ..+........+.. +++...+..+...+ ........
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~--~~~~~~~~~~~~~~-~~~~~~~~ 276 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK--PENLPSVTFVGNYL-QSFRPKPR 276 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC--CCCCCCHHHHHHHH-HHccCCcc
Confidence 99999999999888776553222222 2222222111 12222222332221 22222333332222 11111111
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHH---HHHcCCHHHHHHHHHHHHHCC-C-CCChhhHHHHHHHHHHcCCHHHHHHHH
Q 006640 233 WNVMHKMAASGMKPDV-VTYNTIATA---YAQNGEADQAEEVIVEMEHNG-V-QPNGRTCGIIISGYCKEGKIKEALRFA 306 (637)
Q Consensus 233 ~~~~~~~~~~g~~~~~-~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~A~~~~ 306 (637)
..-+....+. .+.. ..+..+... ....+++++|.+.|++..+.+ . +.....++.+...+...|++++|+..|
T Consensus 277 ~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 277 PAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred hhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1111111111 1110 111111111 123467889999998888754 1 234566778888888899999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 006640 307 RTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKP 386 (637)
Q Consensus 307 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 386 (637)
++.++.. +.....|..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|+..|++.++.. +.
T Consensus 355 ~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~ 431 (615)
T TIGR00990 355 SKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PD 431 (615)
T ss_pred HHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-cc
Confidence 9888763 3346678888888888899999999998887765 3467788888888899999999999999988764 34
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----H-H
Q 006640 387 DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNL-----K-T 460 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~-~ 460 (637)
+...+..+...+.+.|++++|+..|++..+.. +.+...|+.+...+...|++++|+..|++..+.....+. . .
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l 510 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPL 510 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHH
Confidence 57777888888889999999999999888763 566788888889999999999999999998875322111 1 1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 006640 461 FETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS-TFLLLAEARRATGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 523 (637)
+...+..+...|++++|..++++..+ +.|+.. .+..++.++.+.|++++|..++++.....
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~--l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALI--IDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 12222233446899999999988776 345544 67788899999999999999998886653
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=3.2e-19 Score=195.46 Aligned_cols=223 Identities=12% Similarity=0.005 Sum_probs=163.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006640 352 DVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIIS 431 (637)
Q Consensus 352 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 431 (637)
+...|..+..++.. ++.++|+..+.+.... .|+......+...+...|++++|...|+++... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 45556666666555 6777888877777665 355444444455556889999999999887654 455566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006640 432 GWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKE 511 (637)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~e 511 (637)
.+...|+.++|...|++..+... ++...+..+...+...|++++|...+++..+ +.|+...+..+..++.+.|+.++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHH
Confidence 88888999999999988887542 2333344444455566899999999888876 56777788888888999999999
Q ss_pred HHHHHHHHhhcccccc-----------ccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhhhccc
Q 006640 512 AKRILSKIKNKERTNE-----------MEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLL 580 (637)
Q Consensus 512 A~~~~~~~~~~~~~~~-----------~~~~~~~a~~~~e~l~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~ 580 (637)
|+..++++....|++. ..++.+.|...+++++++.|++.. .+.+|+.+|...|++++|....++..+
T Consensus 628 A~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~--a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 628 AVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPA--LIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999999888877641 246678888888888888888765 467888999999999988877766655
Q ss_pred cccC
Q 006640 581 RDAD 584 (637)
Q Consensus 581 ~~~~ 584 (637)
....
T Consensus 706 l~P~ 709 (987)
T PRK09782 706 DIDN 709 (987)
T ss_pred cCCC
Confidence 4443
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=3.9e-21 Score=196.75 Aligned_cols=302 Identities=14% Similarity=0.134 Sum_probs=166.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhcCC
Q 006640 151 AFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKP--NLRTYNVLVRAWCNEKN 228 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~~li~~~~~~g~ 228 (637)
.+...|++++|...|.++.+.++. +..++..+...+...|++++|..+++.+.......+ ...++..++..|...|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 344556666666666666655322 444566666666666666666666666654321110 12345555666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHHcCCHHHHHH
Q 006640 229 ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNG----RTCGIIISGYCKEGKIKEALR 304 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~ 304 (637)
+++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 666666666665432 234555666666666666666666666666554322211 123445555566666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 006640 305 FARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGI 384 (637)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 384 (637)
.|+++.+.. +.+...+..+...+.+.|++++|.+.++.+.+.+......++..++.+|...|++++|...++.+.+.
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 666665442 22344555555556666666666666666554432222344555566666666666666666666554
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHH
Q 006640 385 KPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS---DGSMDRAIEVFDKMCEHGVSPNLK 459 (637)
Q Consensus 385 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~ 459 (637)
.|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.++++.+|++|.+.++.|++.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 234444455666666666666666666666554 4555556555555443 345666666666666554444443
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=8.8e-19 Score=188.85 Aligned_cols=424 Identities=13% Similarity=0.014 Sum_probs=298.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006640 109 TYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYG 188 (637)
Q Consensus 109 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 188 (637)
.+......+...|+++.|+..|++.++. .|+...|..+..+|.+.|++++|+..++...+..+. +...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 3455667788889999999999998875 567888888889999999999999999998887543 6678888899999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006640 189 IAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAE 268 (637)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 268 (637)
..|++++|+..|......+. .+......++..+.. ..+........+.. +++...+..+.. +..........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~--~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~ 277 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDG--FRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRP 277 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCC--CccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcch
Confidence 99999999988877665431 122222222222211 12222233332221 222222222222 22222222222
Q ss_pred HHHHHHHHCCCCCC-hhhHHHHHHHH---HHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 006640 269 EVIVEMEHNGVQPN-GRTCGIIISGY---CKEGKIKEALRFARTMKEYG--VHPNLVIFNLLIKGFVEIMDRDGVDEVLA 342 (637)
Q Consensus 269 ~~~~~~~~~~~~~~-~~~~~~li~~~---~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 342 (637)
.-+....+. .+. ...+..+...+ ...+++++|.+.|+...+.+ .+.....+..+...+...|++++|...++
T Consensus 278 ~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 278 AGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred hhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 222211111 111 11111111111 23478999999999998764 23345678888888999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 006640 343 LMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPN 422 (637)
Q Consensus 343 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 422 (637)
...+..+ .....|..+...+...|++++|+..|+.+++.. +.+..++..+...|...|++++|...|++..+.. +.+
T Consensus 356 kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~ 432 (615)
T TIGR00990 356 KSIELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDF 432 (615)
T ss_pred HHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccC
Confidence 9988652 346688889999999999999999999998864 4468899999999999999999999999999874 567
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH------HHH
Q 006640 423 VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK------STF 496 (637)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~ 496 (637)
...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|+..|++..+.....+. ..+
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLI 511 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHH
Confidence 7888899999999999999999999998753 235778999999999999999999999998763221111 122
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhccccc-----------cccccccchHHHHHHHHhhhccC
Q 006640 497 LLLAEARRATGLTKEAKRILSKIKNKERTN-----------EMEAEEDIPVESLERLYHKEATT 549 (637)
Q Consensus 497 ~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~-----------~~~~~~~~a~~~~e~l~~~~~~~ 549 (637)
......+...|++++|..+++++....|.+ ...++.+.|...+++++++.+..
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 223334455799999999999987766543 13577888889999998876643
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=3.9e-20 Score=189.39 Aligned_cols=302 Identities=12% Similarity=0.120 Sum_probs=177.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHH
Q 006640 184 IKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPD---VVTYNTIATAYAQ 260 (637)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~ 260 (637)
...+...|++++|+..|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|.+
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 344567788888888888888764 44566778888888888888888888888776432211 2456677777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHhH
Q 006640 261 NGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNL----VIFNLLIKGFVEIMDRDG 336 (637)
Q Consensus 261 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~ 336 (637)
.|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 788888888887776642 245667777777777777777777777777665322211 123344445555566666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 337 VDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
|...++++.+.. +.+...+..+...+.+.|++++|.++++++...+......+++.++.+|.+.|++++|...++++.+
T Consensus 199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666555433 1233444555555555666666666665555432111133445555555555555555555555554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCH
Q 006640 417 SGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE---ARQPWRAEEILQIMKAFGVHPQK 493 (637)
Q Consensus 417 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~p~~ 493 (637)
. .|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.++++.++++|.+.++.|+.
T Consensus 278 ~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 278 E--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred h--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 4 234444455555555555555555555555543 3555555555444332 33555555555555544444443
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=3e-18 Score=183.97 Aligned_cols=328 Identities=9% Similarity=0.052 Sum_probs=150.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006640 78 LMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGN 157 (637)
Q Consensus 78 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 157 (637)
++..+.+.|++++|+.+++...... +-+...+..++.+....|+++.|...++++.+.. |.+...+..+...+...|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC
Confidence 3444455555555555555555432 2233334444444445555555555555555543 3344455555555555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006640 158 MEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMH 237 (637)
Q Consensus 158 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 237 (637)
+++|...++++.+..+. +...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...++
T Consensus 126 ~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 126 YATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 55555555555544221 34445555555555555555555555544332 1222222222 22444555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHH----HHHHHHHHHHcC
Q 006640 238 KMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKE----ALRFARTMKEYG 313 (637)
Q Consensus 238 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~ 313 (637)
.+......++...+..+...+...|++++|...++++..... .+...+..+...|...|++++ |+..|++..+..
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 544432222223333334444455555555555555544321 233444445555555555443 444555444432
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHH
Q 006640 314 VHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA-HAYS 392 (637)
Q Consensus 314 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~ 392 (637)
+.+...+..+...+...|++++|...++...+..+ .+...+..+..++.+.|++++|+..++.+.... |+. ..+.
T Consensus 281 -P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~ 356 (656)
T PRK15174 281 -SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNR 356 (656)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHH
Confidence 22344444444445555555555555544444331 123334444444444555555555554444432 221 2222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 393 ILAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 393 ~l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
.+..++...|+.++|...|++..+
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 233344444555555555544444
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.89 E-value=3.5e-18 Score=187.35 Aligned_cols=452 Identities=8% Similarity=0.022 Sum_probs=265.0
Q ss_pred CCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006640 104 KPSLVTYTTL-LAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE-SGNMEEAMDTFWKMKESGLTPTTSTYN 181 (637)
Q Consensus 104 ~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~ 181 (637)
.|+..+.... ...|...|++++|+.++.++.+.+ +.+......|..+|.. .++ +.+..++... +..+...+.
T Consensus 178 ~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ 251 (987)
T PRK09782 178 SPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRI 251 (987)
T ss_pred CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHH
Confidence 3344444444 777777888888888888887776 5555556666667776 355 6666665432 224677777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHH------------------------------HHHHHHHHhcCCHHH
Q 006640 182 TLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTY------------------------------NVLVRAWCNEKNITE 231 (637)
Q Consensus 182 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~------------------------------~~li~~~~~~g~~~~ 231 (637)
.++..|.+.|+.++|.+++.++.....-.|...+| ..++..+.+.++++.
T Consensus 252 ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (987)
T PRK09782 252 TYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDA 331 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHH
Confidence 78888888888888887777765432111222222 111333444444444
Q ss_pred HHHH-----------------------------HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-C-CC
Q 006640 232 AWNV-----------------------------MHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHN-G-VQ 280 (637)
Q Consensus 232 A~~~-----------------------------~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~ 280 (637)
+.++ +..|.+.. +-+......+.-...+.|+.++|.++|...... + ..
T Consensus 332 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 410 (987)
T PRK09782 332 AQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDAR 410 (987)
T ss_pred HHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccc
Confidence 4333 22221110 112233333333455667777777777776542 0 11
Q ss_pred CChhhHHHHHHHHHHcCC---HHHHHHH-------------------------HHHHHHcCCCC--CHHHHHHHHHHHHH
Q 006640 281 PNGRTCGIIISGYCKEGK---IKEALRF-------------------------ARTMKEYGVHP--NLVIFNLLIKGFVE 330 (637)
Q Consensus 281 ~~~~~~~~li~~~~~~g~---~~~A~~~-------------------------~~~~~~~~~~~--~~~~~~~ll~~~~~ 330 (637)
.+......++..|.+.+. ..++..+ +...... .++ +...|..+..++..
T Consensus 411 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~ 489 (987)
T PRK09782 411 LSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD 489 (987)
T ss_pred cCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh
Confidence 223334456666666554 2223222 1111111 123 45566666666655
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006640 331 IMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEEL 410 (637)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 410 (637)
++.++|...+....... |+......+..++...|++++|...|+++... +|+...+..+...+.+.|++++|...
T Consensus 490 -~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~ 564 (987)
T PRK09782 490 -TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRW 564 (987)
T ss_pred -CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHH
Confidence 66667777666665543 44333333444445777777777777776543 34444555666677777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 006640 411 LMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVH 490 (637)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 490 (637)
+++..+.. +++...+..+.......|++++|+..|++..+. .|+...+..+..++.+.|+.++|+..+++... ..
T Consensus 565 l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~ 639 (987)
T PRK09782 565 LQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALE--LE 639 (987)
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hC
Confidence 77777653 333333333334444557777777777777764 35666777777777777777777777777766 44
Q ss_pred CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc-----------cccccccchHHHHHHHHhhhccCCCCCCcccc
Q 006640 491 PQK-STFLLLAEARRATGLTKEAKRILSKIKNKERTN-----------EMEAEEDIPVESLERLYHKEATTASYPNLLQI 558 (637)
Q Consensus 491 p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~-----------~~~~~~~~a~~~~e~l~~~~~~~~~y~~~~~L 558 (637)
|+. ..+..+..++...|++++|+..++++....|.+ ...++.+.|+..++++++++|+++. +....
T Consensus 640 Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~--i~~~~ 717 (987)
T PRK09782 640 PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQAL--ITPLT 717 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch--hhhhh
Confidence 553 356666677777777777777777777666543 2346667777777777777777655 34556
Q ss_pred cccccccCCCchhhhhh
Q 006640 559 PNVVSSDQKGSAAALKK 575 (637)
Q Consensus 559 ~~~y~~~g~~~~a~~~r 575 (637)
+++.....+++.+.+..
T Consensus 718 g~~~~~~~~~~~a~~~~ 734 (987)
T PRK09782 718 PEQNQQRFNFRRLHEEV 734 (987)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 66666666666665533
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=5.3e-18 Score=186.10 Aligned_cols=405 Identities=10% Similarity=0.067 Sum_probs=225.7
Q ss_pred CcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 006640 69 CRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAV 148 (637)
Q Consensus 69 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (637)
+.+.....-.+......|+.++|++++.+.... .+.+...+..+..++...|++++|..++++.++.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 334444555566677788888888888887652 13455567777778888888888888888877764 5556677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 006640 149 INAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN 228 (637)
Q Consensus 149 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 228 (637)
...+...|++++|...++++.+..+. +.. +..+..++...|+.++|+..++++.+.. |.+...+..+...+...+.
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCC
Confidence 77788888888888888888776433 455 7777777888888888888888887764 4456666677777777788
Q ss_pred HHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHC-CCCCChh-hH----HH
Q 006640 229 ITEAWNVMHKMAASGMKPDV------VTYNTIATAYA-----QNGEA---DQAEEVIVEMEHN-GVQPNGR-TC----GI 288 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~~~~~-~~~~~~~-~~----~~ 288 (637)
.++|+..++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+ ..
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 8888877776553 2221 01111222221 11122 4555555555532 1111111 11 01
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHH
Q 006640 289 IISGYCKEGKIKEALRFARTMKEYGVH-PNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNP---DVITYSTIMNAWS 364 (637)
Q Consensus 289 li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~ 364 (637)
.+..+...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|...|+.+.+..... .......+..++.
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 122334455666666666665554311 111 11113445555666666666666554432111 1223344444555
Q ss_pred HcCChHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 365 TAGFMDKCKEIFDDMGKAGI-----------KPD---AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTII 430 (637)
Q Consensus 365 ~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 430 (637)
..|++++|...++.+..... .|+ ...+..+...+...|++++|+++++++.... |.+...+..+.
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA 400 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYA 400 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 55666666666665554421 011 1233344445555555555555555555442 44455555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 431 SGWCSDGSMDRAIEVFDKMCEHGVSPN-LKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
..+...|++++|++.++++.+.. |+ ...+...+..+...|++++|..+++.+.+
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55555555555555555555532 32 33444444455555555555555555554
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=1.3e-18 Score=186.78 Aligned_cols=331 Identities=8% Similarity=0.003 Sum_probs=252.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 006640 145 FNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWC 224 (637)
Q Consensus 145 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 224 (637)
...++..+.+.|++++|..+++......+. +...+..++.+....|++++|...|+++.... |.+...+..+...+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~l~ 121 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASVLL 121 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHH
Confidence 445567778889999999999988887655 45556666677778999999999999998864 556778888888899
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 006640 225 NEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALR 304 (637)
Q Consensus 225 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 304 (637)
..|++++|...++++.+.. +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHH
Confidence 9999999999999988753 335677788888899999999999988887665432 23333333 34778899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH----HHHHHHHHH
Q 006640 305 FARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDK----CKEIFDDMG 380 (637)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~~ 380 (637)
.++.+.+....++...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++ |...|+++.
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 98888765433344455556677888888888988888888765 3467777788888888888875 788888888
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-
Q 006640 381 KAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK- 459 (637)
Q Consensus 381 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~- 459 (637)
+.. +.+..++..+...+.+.|++++|...+++..+.. +.+...+..+..++...|++++|+..|+++.+.. |+..
T Consensus 278 ~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~ 353 (656)
T PRK15174 278 QFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSK 353 (656)
T ss_pred hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchH
Confidence 764 3467788888888888888888888888888764 5566777788888888888888888888888753 4443
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 460 TFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 460 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
.+..+..++...|+.++|...|++..+
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344456678888888888888888766
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=4.3e-18 Score=186.78 Aligned_cols=412 Identities=10% Similarity=-0.007 Sum_probs=315.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006640 104 KPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTL 183 (637)
Q Consensus 104 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 183 (637)
+.++....-.+.+....|+.++|+.++.+..... +.+...+..+...+...|++++|..++++..+..+. +...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 3455556666777889999999999999998643 566778999999999999999999999999887533 67778899
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006640 184 IKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGE 263 (637)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 263 (637)
+..+...|++++|+..+++..+.. |.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...+.
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 999999999999999999998874 55677 9999999999999999999999999874 3356666778888889999
Q ss_pred HHHHHHHHHHHHHCC---CCCChhhHHHHHHHH-----HHcCCH---HHHHHHHHHHHHc-CCCCCHH-HH----HHHHH
Q 006640 264 ADQAEEVIVEMEHNG---VQPNGRTCGIIISGY-----CKEGKI---KEALRFARTMKEY-GVHPNLV-IF----NLLIK 326 (637)
Q Consensus 264 ~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~-----~~~g~~---~~A~~~~~~~~~~-~~~~~~~-~~----~~ll~ 326 (637)
.+.|+..++.+.... ..........++..+ ...+++ ++|+..++.+.+. ...|+.. .+ ...+.
T Consensus 166 ~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 166 SAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 999999988655410 000111222222222 233345 7889999998854 1122221 11 11134
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcC
Q 006640 327 GFVEIMDRDGVDEVLALMKEFRVN-PDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKP---DAHAYSILAKGYVREQ 402 (637)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g 402 (637)
.+...+++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|+..|+.+.+..... .......|..++.+.|
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 456779999999999999887532 332 22335778999999999999999988653211 1355677777889999
Q ss_pred CHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006640 403 EPEKAEELLMTMIESGF-----------HPN---VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGY 468 (637)
Q Consensus 403 ~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 468 (637)
++++|..+++.+.+... .|+ ...+..+...+...|+.++|+++++++....+ -+...+..+...+
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P-~n~~l~~~lA~l~ 403 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP-GNQGLRIDYASVL 403 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 99999999999987521 123 23556778889999999999999999988643 3677889999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 006640 469 SEARQPWRAEEILQIMKAFGVHPQK-STFLLLAEARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
...|++++|++.+++..+ +.|+. ..+...+..+.+.|++++|+.+++++....|+
T Consensus 404 ~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 404 QARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999887 55774 46667777899999999999999999988775
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=8.2e-17 Score=173.09 Aligned_cols=435 Identities=11% Similarity=0.037 Sum_probs=327.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006640 79 MNSLIERGKPQEAQAIFNNLIEGGHKPSL--VTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESG 156 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 156 (637)
+-...+.|+++.|+..|++..+. .|+. ..+ .++..+...|+.++|+..+++.... .+........+...|...|
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcC
Confidence 44567899999999999999975 4443 344 8888888999999999999998832 1334445555577888999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006640 157 NMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVM 236 (637)
Q Consensus 157 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 236 (637)
++++|+++|+++.+..+. +...+..++..|...++.++|++.++++.... |+...+..++..+...++..+|++.+
T Consensus 117 dyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d---p~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 117 RWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERD---PTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred CHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC---cchHHHHHHHHHHHhcchHHHHHHHH
Confidence 999999999999998765 67788888999999999999999999998764 66666655555555567776799999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhH------HHHHHHH---H--HcCC---HHHH
Q 006640 237 HKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTC------GIIISGY---C--KEGK---IKEA 302 (637)
Q Consensus 237 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------~~li~~~---~--~~g~---~~~A 302 (637)
+++.+.. +.+...+..+..+..+.|-...|.++..+-... +.+....+ ..++..- . ...+ .+.|
T Consensus 193 ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~a 270 (822)
T PRK14574 193 SEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKA 270 (822)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 9999874 446777888999999999999998877653211 11111000 0111000 0 1122 3456
Q ss_pred HHHHHHHHHc-C-CCCCHH----HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 006640 303 LRFARTMKEY-G-VHPNLV----IFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIF 376 (637)
Q Consensus 303 ~~~~~~~~~~-~-~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 376 (637)
+.-++.+... + .++... ...-.+-++...++..+++..++.+...+.+....+-..+.++|...+++++|..++
T Consensus 271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 6666665542 1 122212 223456678889999999999999998886666778889999999999999999999
Q ss_pred HHHHHCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-------------CCCHH-HHHHHHHHHHhcC
Q 006640 377 DDMGKAG-----IKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGF-------------HPNVV-IFTTIISGWCSDG 437 (637)
Q Consensus 377 ~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------~~~~~-~~~~li~~~~~~g 437 (637)
+.+.... .+++......|..+|...+++++|..+++++.+... .||-. ....++..+...|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g 430 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN 430 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 9997643 123445567899999999999999999999987311 12222 3344667788999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHH
Q 006640 438 SMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS-TFLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 438 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~~~ 516 (637)
+..+|++.++++....+ -|......+...+...|.+.+|.+.++.... +.|+.. .....+.++...|++++|..++
T Consensus 431 dl~~Ae~~le~l~~~aP-~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 431 DLPTAQKKLEDLSSTAP-ANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 99999999999987653 3888999999999999999999999987765 466644 6668888889999999999999
Q ss_pred HHHhhccccc
Q 006640 517 SKIKNKERTN 526 (637)
Q Consensus 517 ~~~~~~~~~~ 526 (637)
+++.+..|++
T Consensus 508 ~~l~~~~Pe~ 517 (822)
T PRK14574 508 DDVISRSPED 517 (822)
T ss_pred HHHHhhCCCc
Confidence 9998887754
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.86 E-value=2.2e-17 Score=169.44 Aligned_cols=450 Identities=14% Similarity=0.081 Sum_probs=345.5
Q ss_pred cCcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 006640 68 SCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHK--PSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFF 145 (637)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 145 (637)
...+++..+.|.+.|.-.|++..+..+...++..... .-..+|-.+.+++-..|+++.|...|.+..+..-..-+..+
T Consensus 266 n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~ 345 (1018)
T KOG2002|consen 266 NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPL 345 (1018)
T ss_pred cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccc
Confidence 4457888889999999999999999999988864321 12346788899999999999999999888876422224455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 006640 146 NAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAG----KPEESVKLLDLMSREGNVKPNLRTYNVLVR 221 (637)
Q Consensus 146 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 221 (637)
--|...|.+.|+++.+...|+.+.+..+. +..+...|...|+..+ ..+.|..++.+..+.. +.|...|-.+..
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~--~~d~~a~l~laq 422 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT--PVDSEAWLELAQ 422 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc--cccHHHHHHHHH
Confidence 66789999999999999999999886432 5667777777787765 5677888888877753 668888888888
Q ss_pred HHHhcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCh------hhHHH
Q 006640 222 AWCNEKNITEAWNVMHKMA----ASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHN---GVQPNG------RTCGI 288 (637)
Q Consensus 222 ~~~~~g~~~~A~~~~~~~~----~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~------~~~~~ 288 (637)
.+....-+.. +.+|.... ..+..+.+...|.+...+...|+++.|...|...... ...++. .+-..
T Consensus 423 l~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 423 LLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 8766554444 66665543 4555678889999999999999999999999887654 112222 23344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 006640 289 IISGYCKEGKIKEALRFARTMKEYGVHPNL-VIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAG 367 (637)
Q Consensus 289 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 367 (637)
+...+-..++++.|.+.|..+.+.. |+- ..|--++......+...+|...++...... ..++..++.+...+....
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~ 578 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKS 578 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhh
Confidence 5666677789999999999998763 443 344444433444577788888888887754 456677777888888888
Q ss_pred ChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006640 368 FMDKCKEIFDDMGKA-GIKPDAHAYSILAKGYVR------------EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWC 434 (637)
Q Consensus 368 ~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 434 (637)
.+..|.+-|..+.+. ...+|..+.-+|.+.|.+ .+..++|+++|.++++.. |.|...-|-+.-.++
T Consensus 579 ~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA 657 (1018)
T KOG2002|consen 579 EWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLA 657 (1018)
T ss_pred hhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhh
Confidence 888888877766553 223677777778776643 345788999999999875 778888899999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006640 435 SDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK-AFGVHPQKSTFLLLAEARRATGLTKEAK 513 (637)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~eA~ 513 (637)
..|++.+|..+|.+..+... -+..+|..+..+|...|++..|++.|+... +....-+.....+|..++.++|.+.+|.
T Consensus 658 ~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak 736 (1018)
T KOG2002|consen 658 EKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAK 736 (1018)
T ss_pred hccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999998653 256689999999999999999999999864 5555667788999999999999999999
Q ss_pred HHHHHHhhccccc
Q 006640 514 RILSKIKNKERTN 526 (637)
Q Consensus 514 ~~~~~~~~~~~~~ 526 (637)
+.+..+....|++
T Consensus 737 ~~ll~a~~~~p~~ 749 (1018)
T KOG2002|consen 737 EALLKARHLAPSN 749 (1018)
T ss_pred HHHHHHHHhCCcc
Confidence 9999987776653
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=2.1e-15 Score=162.38 Aligned_cols=426 Identities=12% Similarity=0.065 Sum_probs=309.2
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 006640 115 AALTIQKRFNSIHSIMSQVEENGMDPDS-IFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKP 193 (637)
Q Consensus 115 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 193 (637)
-...+.|+++.|+..|+++++.. +.+. .++ .++..+...|+.++|+.++++..... .........+...|...|++
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCH
Confidence 34568999999999999999864 3332 344 88888999999999999999998321 12333444456788899999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006640 194 EESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVE 273 (637)
Q Consensus 194 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 273 (637)
++|+++|+++.+.. |.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.+++
T Consensus 119 d~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 119 DQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred HHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 99999999999875 566788888889999999999999999999876 55666665555555556777679999999
Q ss_pred HHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHH---------HcCCHhH---HHH
Q 006640 274 MEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIF--NLLIKGFV---------EIMDRDG---VDE 339 (637)
Q Consensus 274 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~ll~~~~---------~~~~~~~---a~~ 339 (637)
+.+..+ .+...+..+..+..+.|-...|.++..+-...- .+....+ ...+.-.+ ...++.. +..
T Consensus 195 ll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 195 AVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 998753 467777888899999999999987766543211 1111111 00000111 1122333 344
Q ss_pred HHHHHHh-CCCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006640 340 VLALMKE-FRVNPDV-----ITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMT 413 (637)
Q Consensus 340 ~~~~~~~-~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 413 (637)
-++.+.. .+..|.. ....-.+-++...+++.++++.|+.+...+.+....+-.++.++|...+++++|..+++.
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 4444433 1222321 122344557788999999999999999887666677889999999999999999999999
Q ss_pred HHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------------CCCHH-HHHHHHHHHHhcCCh
Q 006640 414 MIESG-----FHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGV-------------SPNLK-TFETLMWGYSEARQP 474 (637)
Q Consensus 414 ~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------------~p~~~-~~~~l~~~~~~~g~~ 474 (637)
+.... .+++......|.-+|...+++++|..+++++.+..+ .||-. .+..++..+...|+.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 97642 123444457889999999999999999999987321 23333 344557778899999
Q ss_pred hHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc-----------cccccccchHHHHHHH
Q 006640 475 WRAEEILQIMKAFGVHP-QKSTFLLLAEARRATGLTKEAKRILSKIKNKERTN-----------EMEAEEDIPVESLERL 542 (637)
Q Consensus 475 ~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~-----------~~~~~~~~a~~~~e~l 542 (637)
.+|++.++++.. ..| +......+.+++...|+..+|+..++.+....|++ ...++.+.|.....++
T Consensus 433 ~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 433 PTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 999999999976 445 45688899999999999999999998876665542 1235556666777777
Q ss_pred HhhhccCCC
Q 006640 543 YHKEATTAS 551 (637)
Q Consensus 543 ~~~~~~~~~ 551 (637)
++..|++..
T Consensus 511 ~~~~Pe~~~ 519 (822)
T PRK14574 511 ISRSPEDIP 519 (822)
T ss_pred HhhCCCchh
Confidence 777787765
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.82 E-value=2.7e-16 Score=161.54 Aligned_cols=456 Identities=13% Similarity=0.117 Sum_probs=329.3
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHH
Q 006640 87 KPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMD--PDSIFFNAVINAFSESGNMEEAMDT 164 (637)
Q Consensus 87 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~ 164 (637)
.+..++.++...-... +-|+++.+.|.+-+...|+++.+..+...+...... .-...|-.+.++|-..|+++.|...
T Consensus 251 s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 3445555555554322 346777778888888888888888888887765311 1234577788888888999999998
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHH
Q 006640 165 FWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEK----NITEAWNVMHKMA 240 (637)
Q Consensus 165 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~ 240 (637)
|.+..+....-....+--|...|...|+++.+...|+.+.... |.+..+...|...|...+ ..+.|..++.+..
T Consensus 330 Y~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~--p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~ 407 (1018)
T KOG2002|consen 330 YMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL--PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL 407 (1018)
T ss_pred HHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC--cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence 8888776433223445567888889999999999999888864 556778888888887765 5677777777777
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc---C
Q 006640 241 ASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEM----EHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEY---G 313 (637)
Q Consensus 241 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~ 313 (637)
+.- +.|...|..+..++....-+.. +.+|..+ ...+..+.....|.+.......|++++|...|...... .
T Consensus 408 ~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~ 485 (1018)
T KOG2002|consen 408 EQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV 485 (1018)
T ss_pred hcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence 653 4577788877777766544443 6666544 34455567788999999999999999999999888654 1
Q ss_pred CCCCH------HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 006640 314 VHPNL------VIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD 387 (637)
Q Consensus 314 ~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 387 (637)
..++. .+-..+...+-..++.+.|.+.|+.+.+..+ .-+..|..+.......+...+|...+....... ..+
T Consensus 486 ~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp-~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~n 563 (1018)
T KOG2002|consen 486 ANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP-GYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSN 563 (1018)
T ss_pred cCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc-hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCC
Confidence 12222 2233345555666788999999999887642 234455555544455678889999999888753 567
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHH------------hcCCHHHHHHHHHHHHHCCC
Q 006640 388 AHAYSILAKGYVREQEPEKAEELLMTMIESG-FHPNVVIFTTIISGWC------------SDGSMDRAIEVFDKMCEHGV 454 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~------------~~g~~~~A~~~~~~m~~~~~ 454 (637)
+.+++.+...+.+...+..|.+-|..+.+.. ..+|..+.-+|+..|. ..+..++|+++|.+.+...+
T Consensus 564 p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp 643 (1018)
T KOG2002|consen 564 PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP 643 (1018)
T ss_pred cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc
Confidence 8888888889999999999999887776542 2357777777777554 23567889999999998754
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc-ccc------
Q 006640 455 SPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKER-TNE------ 527 (637)
Q Consensus 455 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~-~~~------ 527 (637)
. |...-+.+.-.++..|++.+|..+|.+..+... -...+|..++.+|...|++-.|++.++.+..... ++.
T Consensus 644 k-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~ 721 (1018)
T KOG2002|consen 644 K-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHY 721 (1018)
T ss_pred c-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 3 777888999999999999999999999976443 2456889999999999999999999999876532 111
Q ss_pred ------ccccccchHHHHHHHHhhhccCCC
Q 006640 528 ------MEAEEDIPVESLERLYHKEATTAS 551 (637)
Q Consensus 528 ------~~~~~~~a~~~~e~l~~~~~~~~~ 551 (637)
..+....+...+.++..+.|++..
T Consensus 722 Lara~y~~~~~~eak~~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 722 LARAWYEAGKLQEAKEALLKARHLAPSNTS 751 (1018)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCccch
Confidence 123456666777777778887765
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=3.5e-13 Score=126.44 Aligned_cols=423 Identities=13% Similarity=0.160 Sum_probs=185.7
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hhHH-HHHHHHHHHcC-----------
Q 006640 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKR--FNSI-HSIMSQVEENG----------- 137 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a-~~~~~~~~~~~----------- 137 (637)
+.+-|.|+. +..+|...++.-+|+.|...|++.+...-..|++..+-.+. ..-| .+.|-.|.+.|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 444455544 45678899999999999998887777776666654433222 2111 12222333222
Q ss_pred --------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 006640 138 --------MDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNV 209 (637)
Q Consensus 138 --------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 209 (637)
.+.+..++..+|.++++-...+.|..++++......+.+..++|.+|.+-.-. ...+++.+|.... +
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqk-m 269 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQK-M 269 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhh-c
Confidence 13334445555555555555555555555544444444444555444332211 1134444444433 4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHH----CCCC
Q 006640 210 KPNLRTYNVLVRAWCNEKNITE----AWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQ-AEEVIVEMEH----NGVQ 280 (637)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~----~~~~ 280 (637)
.||..|+|+++++..+.|+++. |.+++.+|++.|+.|...+|..+|..+.+.++..+ +..++.++.. +.++
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 4555555555555555554432 23344444455555555555555544444444321 2222222221 1111
Q ss_pred C----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC
Q 006640 281 P----NGRTCGIIISGYCKEGKIKEALRFARTMKEYG----VHPN---LVIFNLLIKGFVEIMDRDGVDEVLALMKEFRV 349 (637)
Q Consensus 281 ~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 349 (637)
| |...+...++.|....+.+-|.++..-+.... +.|+ ..-|..+....++....+.....|+.|.-.-.
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 1 22223333444444444444444433332110 1111 11233333344444444444444444444333
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HH
Q 006640 350 NPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVV---IF 426 (637)
Q Consensus 350 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~ 426 (637)
-|+..+...++.+....+.++-..+++..+...|..-......-+...+++.. ..|+.. -+
T Consensus 430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k----------------~hp~tp~r~Ql 493 (625)
T KOG4422|consen 430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK----------------LHPLTPEREQL 493 (625)
T ss_pred cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC----------------CCCCChHHHHH
Confidence 34444444444444444444444444444444332211111111111111111 111111 11
Q ss_pred HHHHHHHHhcCCHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCCHHHHHHHHH
Q 006640 427 TTIISGWCSDGSMDRA-IEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFG----VHPQKSTFLLLAE 501 (637)
Q Consensus 427 ~~li~~~~~~g~~~~A-~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~l~~ 501 (637)
.....-|+. ++.++ ...-.+|.... -.....+.++..+.+.|+.++|.++|....+.+ ..|.......+++
T Consensus 494 ~~~~ak~aa--d~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d 569 (625)
T KOG4422|consen 494 QVAFAKCAA--DIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMD 569 (625)
T ss_pred HHHHHHHHH--HHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHH
Confidence 111111100 11111 11122333333 334455555556777777777777777664322 2233334445666
Q ss_pred HHHHcCCHHHHHHHHHHHh
Q 006640 502 ARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 502 ~~~~~g~~~eA~~~~~~~~ 520 (637)
.-.+....-.|...++-|.
T Consensus 570 ~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 570 SAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred HHHhcCCHHHHHHHHHHHH
Confidence 6666677777777776664
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.75 E-value=5.1e-13 Score=131.76 Aligned_cols=506 Identities=11% Similarity=0.051 Sum_probs=382.0
Q ss_pred CcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 006640 69 CRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAV 148 (637)
Q Consensus 69 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (637)
++++..|-. .+..-+.+.|+-++.+..+. ++.+...|. ++++...++.|..++.++.+. ++.+..+|.+-
T Consensus 377 P~sv~LWKa----AVelE~~~darilL~rAvec-cp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWita 446 (913)
T KOG0495|consen 377 PRSVRLWKA----AVELEEPEDARILLERAVEC-CPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITA 446 (913)
T ss_pred CchHHHHHH----HHhccChHHHHHHHHHHHHh-ccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHH
Confidence 344555543 44566777899999998874 344555554 455666788999999988765 58889999888
Q ss_pred HHHHHhcCCHHHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHH
Q 006640 149 INAFSESGNMEEAMDTFWK----MKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKP-NLRTYNVLVRAW 223 (637)
Q Consensus 149 i~~~~~~g~~~~A~~~~~~----m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~~li~~~ 223 (637)
...=-.+|+.+...++.++ +...|+..+...|..=...|-..|..-.+..+......-|.-.. -..||+.-...|
T Consensus 447 a~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~ 526 (913)
T KOG0495|consen 447 AKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSC 526 (913)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHH
Confidence 8888888999888888765 44568888889998888888888988888888888776652222 256899999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 006640 224 CNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEAL 303 (637)
Q Consensus 224 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 303 (637)
.+.+.++-|..+|...++. ++.+...|...+..--..|..++-..+|++....- +.....|.....-+...|++..|.
T Consensus 527 ~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 527 EKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred HhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHH
Confidence 9999999999999988876 34466778777777777889999999999988763 234566777777888889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 006640 304 RFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAG 383 (637)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 383 (637)
.++.+..+.. +.+...|-.-+.....+..++.|..+|.+....+ ++...|.--+..-...+..++|++++++.++.
T Consensus 605 ~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~s--gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~- 680 (913)
T KOG0495|consen 605 VILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSIS--GTERVWMKSANLERYLDNVEEALRLLEEALKS- 680 (913)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC--CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-
Confidence 9999988775 4467788888888889999999999998887754 56666766666666788999999999988876
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006640 384 IKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFET 463 (637)
Q Consensus 384 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 463 (637)
++.-...|..+.+.+-+.++.+.|.+.|..-.+. .|..+..|-.+...--+.|.+-.|..++++..-.++. |...|..
T Consensus 681 fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle 758 (913)
T KOG0495|consen 681 FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLE 758 (913)
T ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHH
Confidence 3445678888899999999999999998887665 3556677888888888889999999999999877654 7788999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc--------cccccccch
Q 006640 464 LMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERTN--------EMEAEEDIP 535 (637)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~--------~~~~~~~~a 535 (637)
.|..=.+.|..+.|..+..+..+. ..-+...|..-+....+.++--.+...+++.. ..||- =.+...+.|
T Consensus 759 ~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce-~dphVllaia~lfw~e~k~~ka 836 (913)
T KOG0495|consen 759 SIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE-HDPHVLLAIAKLFWSEKKIEKA 836 (913)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhcc-CCchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999888776541 22234577788888888877666666666542 12221 024566777
Q ss_pred HHHHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhhhccccccCcccchhhhhcchhh
Q 006640 536 VESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDADSSLECSWFATTSMY 598 (637)
Q Consensus 536 ~~~~e~l~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~~~~k~~g~swi~~~~~~ 598 (637)
..=+++++..+|+++.. ...+...|...|.-++-..|+++-..... .-|..|+-|..-|
T Consensus 837 r~Wf~Ravk~d~d~GD~--wa~fykfel~hG~eed~kev~~~c~~~EP--~hG~~W~avSK~i 895 (913)
T KOG0495|consen 837 REWFERAVKKDPDNGDA--WAWFYKFELRHGTEEDQKEVLKKCETAEP--THGELWQAVSKDI 895 (913)
T ss_pred HHHHHHHHccCCccchH--HHHHHHHHHHhCCHHHHHHHHHHHhccCC--CCCcHHHHHhhhH
Confidence 77888999999998873 44455667778877777766655443333 3478888775444
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=3.7e-13 Score=126.30 Aligned_cols=364 Identities=16% Similarity=0.212 Sum_probs=237.3
Q ss_pred cCcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 006640 68 SCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNA 147 (637)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 147 (637)
.+.+..++..||.++++-...+.|.+++.+..+...+.+..+||.+|.+-.-. ...+++.+|....+.||..|+|+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHH
Confidence 45677889999999999999999999999888776788889999998775433 33778888988888999999999
Q ss_pred HHHHHHhcCCHHHH----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHhc--C-----CCCCCHHH
Q 006640 148 VINAFSESGNMEEA----MDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEE-SVKLLDLMSRE--G-----NVKPNLRT 215 (637)
Q Consensus 148 li~~~~~~g~~~~A----~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~--~-----~~~~~~~~ 215 (637)
++...++.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++... | ..+.|...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 99999999987654 5677888899999999999999998888877644 44444444331 1 12335566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 006640 216 YNVLVRAWCNEKNITEAWNVMHKMAASG----MKPD---VVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGI 288 (637)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~~~~~g----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 288 (637)
|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+..+.++....+....+|+.|+-+-+-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 7777888888888888888776554321 2233 23345666777778888888888888877766777788888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-
Q 006640 289 IISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAG- 367 (637)
Q Consensus 289 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g- 367 (637)
++++..-.|+++-.-+++.+++..|...+.. -.++++..+....+.|+...-..+-.+.+++.
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~----------------l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa 502 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSD----------------LREEILMLLARDKLHPLTPEREQLQVAFAKCAA 502 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHH----------------HHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH
Confidence 8888888888888888888777655322222 12333444444333333221111211111110
Q ss_pred Ch-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHHH
Q 006640 368 FM-DKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGF----HPNVVIFTTIISGWCSDGSMDRA 442 (637)
Q Consensus 368 ~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A 442 (637)
++ +.....-.++.+. .......+.++-.+.+.|+.++|.++|..+.+.+. .|......-++..-.+..+...|
T Consensus 503 d~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA 580 (625)
T KOG4422|consen 503 DIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQA 580 (625)
T ss_pred HHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHH
Confidence 11 1111112223333 33445556666667788888888888887755432 12222333444455556666666
Q ss_pred HHHHHHHHHCC
Q 006640 443 IEVFDKMCEHG 453 (637)
Q Consensus 443 ~~~~~~m~~~~ 453 (637)
+.+++-|...+
T Consensus 581 ~~~lQ~a~~~n 591 (625)
T KOG4422|consen 581 IEVLQLASAFN 591 (625)
T ss_pred HHHHHHHHHcC
Confidence 66666665543
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.72 E-value=2.8e-12 Score=131.63 Aligned_cols=369 Identities=13% Similarity=0.129 Sum_probs=259.5
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006640 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVI 149 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 149 (637)
+.+...-...+.+...|++++|..++.+++... +.+...|.+|...|-..|+.+++...+-.+.... +.|...|..+.
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~la 214 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLA 214 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 345555556666667799999999999999864 4588899999999999999999998777666555 77889999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH-H----HHHHHHHHHH
Q 006640 150 NAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNL-R----TYNVLVRAWC 224 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~----~~~~li~~~~ 224 (637)
....+.|++++|.-.|.+.++..+. +...+---+..|-+.|+...|.+-|.++.... ||.. . ..-.+++.+.
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~--p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLD--PPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998654 55555666788999999999999999998864 3322 2 2233456666
Q ss_pred hcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC------------------------
Q 006640 225 NEKNITEAWNVMHKMAASG-MKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGV------------------------ 279 (637)
Q Consensus 225 ~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------------------------ 279 (637)
..++-+.|.+.++.....+ -..+...++.++..+.+...++.|......+.....
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~ 371 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVG 371 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCC
Confidence 7777799999988887622 234556778888999999999998888777655111
Q ss_pred ---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHH
Q 006640 280 ---QPNGRTCGIIISGYCKEGKIKEALRFARTMKEYG--VHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVI 354 (637)
Q Consensus 280 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 354 (637)
.++..++ .+.-++...+..+....+...+.... +..+...|.-+..+|.+.|.+.+|..++..+......-+..
T Consensus 372 ~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~ 450 (895)
T KOG2076|consen 372 KELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAF 450 (895)
T ss_pred CCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchh
Confidence 1122221 11222223333333333333344443 23345577777888888888888888888887765555677
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------CCCCCCHHHH
Q 006640 355 TYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIE--------SGFHPNVVIF 426 (637)
Q Consensus 355 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~ 426 (637)
.|-.+..+|...|..+.|.+.|..++... +.+..+-..|...|.+.|+.++|.+.+..+.. .+..|+....
T Consensus 451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~ 529 (895)
T KOG2076|consen 451 VWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRIL 529 (895)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHH
Confidence 78888888888888888888888877753 33555666677777888888888888877542 2234444444
Q ss_pred HHHHHHHHhcCCHHHHHHH
Q 006640 427 TTIISGWCSDGSMDRAIEV 445 (637)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~ 445 (637)
-.....+...|+.++-+.+
T Consensus 530 ~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 530 AHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHHHhhhHHHHHHH
Confidence 4455556666666654443
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.71 E-value=9.7e-12 Score=122.94 Aligned_cols=431 Identities=9% Similarity=0.013 Sum_probs=255.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH----HcCCCCCHHHHHHHHHHHH
Q 006640 78 LMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVE----ENGMDPDSIFFNAVINAFS 153 (637)
Q Consensus 78 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~~~ 153 (637)
|.-+|++..-++.|..+++...+. ++.+...|.+-...--.+|+.+....++++.+ ..|+..+...|..=...|-
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 344556666778888888888773 66677778777666667777777777766543 3466667777766666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006640 154 ESGNMEEAMDTFWKMKESGLTPT--TSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITE 231 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 231 (637)
..|.+-.+..+.......|+.-. ..+|+.-...|.+.+.++-|+.+|....+. ++.+...|...+..--..|..++
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHH
Confidence 66777666666666666555322 345666666666677777777776666654 34455666666666566666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 232 AWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 232 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
-..+|++.... .+.....|......+-..|+...|..++.+..+... .+...|-.-+.....+..++.|..+|.+...
T Consensus 569 l~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 569 LEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 66666666654 233445555555555666666666666666655433 2455666666666666666666666666655
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 006640 312 YGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAY 391 (637)
Q Consensus 312 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 391 (637)
. .++...|.--+...--.+..++|.++++...+.- +.-.-.|..+...+-+.++++.|...|..-.+. ++.....|
T Consensus 647 ~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLW 722 (913)
T KOG0495|consen 647 I--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLW 722 (913)
T ss_pred c--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHH
Confidence 4 3455555544444445556666666666655542 222345556666666666666666666554443 23344556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------------------
Q 006640 392 SILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHG------------------ 453 (637)
Q Consensus 392 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------------------ 453 (637)
-.|...--+.|.+-.|..++++..-.+ |.+...|-..|..-.+.|+.+.|..+..+++..-
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~ 801 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQ 801 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcc
Confidence 566665566666666666666665554 5566666666666666666666666655554321
Q ss_pred -----------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006640 454 -----------VSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK-STFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 454 -----------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
..-|+.....+...+....++++|.+.|.+..+ +.||. .+|.-+...+.+.|.-++-.+++.+..
T Consensus 802 rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 802 RKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred cchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 112344444445555555555555555555544 33332 345555555555555555555555443
No 32
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.1e-11 Score=118.02 Aligned_cols=442 Identities=12% Similarity=0.073 Sum_probs=338.4
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006640 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 150 (637)
+...|..-.+.=..+++++.|+.+|++.+... ..+...|...+..-.+++....|..++++++..- |.-...|-..+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHH
Confidence 45556666666667889999999999999854 4578888888888899999999999999998752 434456766776
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 006640 151 AFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNIT 230 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 230 (637)
+=-..|++..|.++|++-.+. .|+...|++.|+.-.+.+.++.|..++++..- +.|++.+|--....--+.|...
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHH
Confidence 777889999999999998875 68999999999999999999999999999987 4699999999999999999999
Q ss_pred HHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHHcCCH---HHHHH
Q 006640 231 EAWNVMHKMAAS-G-MKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPN-GRTCGIIISGYCKEGKI---KEALR 304 (637)
Q Consensus 231 ~A~~~~~~~~~~-g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~---~~A~~ 304 (637)
.|..+|....+. | -..+...+++...--.++..++.|.-+|+-.++.-+... ...|......--+.|+. ++++-
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 999999988753 1 011234555555555667889999999988877522211 33444444444455653 44432
Q ss_pred -----HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCH--HHHHHH--------HHHHHHcCCh
Q 006640 305 -----FARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDV--ITYSTI--------MNAWSTAGFM 369 (637)
Q Consensus 305 -----~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l--------i~~~~~~g~~ 369 (637)
-++++.+.+ +.|-.+|-..+..-...|+.+...++|+..+..- +|-. ..|..- +-.-....++
T Consensus 305 ~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 244444443 6788899988988888999999999999998753 3321 112111 1112356789
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006640 370 DKCKEIFDDMGKAGIKPDAHAYSILAKGY----VREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEV 445 (637)
Q Consensus 370 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 445 (637)
+.+.++++..++. ++...+|+.-+=-+| .++.++..|.+++...+. ..|...+|...|..-.+.++++....+
T Consensus 383 ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 383 ERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999884 455556665544444 578999999999998875 489999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc
Q 006640 446 FDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGV-HPQKSTFLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 446 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
+++.++.++. |-.+|......=...|+.+.|..+|+-...... .-....|...++--...|.++.|..+++++..+..
T Consensus 460 YEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 460 YEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 9999997643 677888888888889999999999998875332 22233677888888899999999999999987766
Q ss_pred c
Q 006640 525 T 525 (637)
Q Consensus 525 ~ 525 (637)
|
T Consensus 539 h 539 (677)
T KOG1915|consen 539 H 539 (677)
T ss_pred c
Confidence 5
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=6.1e-14 Score=132.25 Aligned_cols=443 Identities=15% Similarity=0.135 Sum_probs=263.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHH
Q 006640 74 SMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYT-TLLAALTIQKRFNSIHSIMSQVEENGMDPD----SIFFNAV 148 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l 148 (637)
....|.+.|..+....+|+..|+-+.+...-|+.-... .+...+.+...+..|++.|+..+..-...+ ..+.+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 34556677777888899999999888766666654332 234667788889999999987775421111 3355666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-----------CCCHHHHH
Q 006640 149 INAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNV-----------KPNLRTYN 217 (637)
Q Consensus 149 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----------~~~~~~~~ 217 (637)
.-.+.+.|++++|+.-|+...+. .|+..+-..|+-++...|+-++..+.|.+|....+. .|+....+
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 66778899999999999998775 367766666666777789999999999998753211 12333332
Q ss_pred HHH-----HHHHhcC--CHHHHHHHHHHHHHCCCCCCHHH-------------H--------HHHHHHHHHcCCHHHHHH
Q 006640 218 VLV-----RAWCNEK--NITEAWNVMHKMAASGMKPDVVT-------------Y--------NTIATAYAQNGEADQAEE 269 (637)
Q Consensus 218 ~li-----~~~~~~g--~~~~A~~~~~~~~~~g~~~~~~~-------------~--------~~li~~~~~~g~~~~A~~ 269 (637)
..+ .-.-+.. +.++++-.-.+++..-+.||-.. + -.-..-+.++|+++.|.+
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 222 2222221 12222222222222222232100 0 012346788999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 006640 270 VIVEMEHNGVQPNGRTCGIIISGYCK--EGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEF 347 (637)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 347 (637)
+++-+.+..-+.....-+.|-..+.- ..++..|.++-+...... +-+......-.+.....|+++.|.+.+++....
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 98877665332222233333222222 335666666666655432 333333333333344557777777777776654
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006640 348 RVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFT 427 (637)
Q Consensus 348 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 427 (637)
...-....|+ +.-.+...|++++|++.|-++..- +..+..+...+...|....+...|++++.+.... ++.|+....
T Consensus 520 dasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ils 596 (840)
T KOG2003|consen 520 DASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILS 596 (840)
T ss_pred chHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHH
Confidence 3221222222 233445667777777776665432 1235666666667777777777777777666554 466677777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHc
Q 006640 428 TIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLA-EARRAT 506 (637)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~-~~~~~~ 506 (637)
.|...|-+.|+-..|.+.+-+-... ++-|..+...|..-|....-+++++.+|++..- +.|+..-|..|+ .++.|.
T Consensus 597 kl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 597 KLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhc
Confidence 7777777777777776665544332 334666666666667777777777777776544 667776666554 445566
Q ss_pred CCHHHHHHHHHHHhhcccc
Q 006640 507 GLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 507 g~~~eA~~~~~~~~~~~~~ 525 (637)
|++..|..+++....+.|.
T Consensus 674 gnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred ccHHHHHHHHHHHHHhCcc
Confidence 7777777777777666554
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=2.7e-12 Score=131.84 Aligned_cols=365 Identities=13% Similarity=0.130 Sum_probs=275.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006640 110 YTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI 189 (637)
Q Consensus 110 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 189 (637)
.-.....+...|++++|..++.++++.. +.+...|..|...|-..|+.+++...+-......+. |...|..+.....+
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHh
Confidence 3333445556699999999999999986 778899999999999999999999888777776655 77899999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHHcCCHH
Q 006640 190 AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYN----TIATAYAQNGEAD 265 (637)
Q Consensus 190 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~----~li~~~~~~g~~~ 265 (637)
.|.++.|.-.|.+..+.. |++...+---...|-+.|+...|..-|.++.....+.|..-+. ..+..+...++-+
T Consensus 220 ~~~i~qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred cccHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999999875 6777777777889999999999999999998874322322222 3455677778889
Q ss_pred HHHHHHHHHHHCC-CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------------------------CCC
Q 006640 266 QAEEVIVEMEHNG-VQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGV---------------------------HPN 317 (637)
Q Consensus 266 ~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---------------------------~~~ 317 (637)
.|.+.++.....+ -..+...++.++..|.+...++.|......+..... .++
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 9999988876622 234567788999999999999999998888766211 222
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 318 LVIFNLLIKGFVEIMDRDGVDEVLALMKEFR--VNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILA 395 (637)
Q Consensus 318 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 395 (637)
..++ -+.-++......+....+...+.... +.-+...|..+..+|...|++..|+.+|..+......-+..+|-.+.
T Consensus 378 l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 378 LRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred chhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 2221 12223334444444444555555544 34456778889999999999999999999998765555678899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHH
Q 006640 396 KGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE--------HGVSPNLKTFETLMWG 467 (637)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~p~~~~~~~l~~~ 467 (637)
.+|...|..+.|.+.|+.++... |.+...--.|...+-+.|+.++|.++++.+.. .+..|+..........
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~ 535 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDI 535 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHH
Confidence 99999999999999999998864 55666777788888899999999999988642 2344555555666677
Q ss_pred HHhcCChhHHHHH
Q 006640 468 YSEARQPWRAEEI 480 (637)
Q Consensus 468 ~~~~g~~~~A~~~ 480 (637)
+...|+.++=+..
T Consensus 536 l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 536 LFQVGKREEFINT 548 (895)
T ss_pred HHHhhhHHHHHHH
Confidence 7778877764443
No 35
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.66 E-value=8.2e-13 Score=133.95 Aligned_cols=289 Identities=10% Similarity=0.045 Sum_probs=148.7
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHH
Q 006640 190 AGKPEESVKLLDLMSREGNVKPNLRT-YNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYN--TIATAYAQNGEADQ 266 (637)
Q Consensus 190 ~g~~~~A~~~~~~m~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~--~li~~~~~~g~~~~ 266 (637)
.|+++.|.+.+....+.. ++... +........+.|+++.|...+.++.+. .|+..... .....+...|+++.
T Consensus 97 eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 456666655555444321 11222 222223334555555555555555543 23322111 22445555555555
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006640 267 AEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKE 346 (637)
Q Consensus 267 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 346 (637)
|...++++.+..+ .+......+...|.+.|++++|..++..+.+.+..+ ......+-
T Consensus 172 Al~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~-~~~~~~l~--------------------- 228 (398)
T PRK10747 172 ARHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD-EEHRAMLE--------------------- 228 (398)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC-HHHHHHHH---------------------
Confidence 5555555554432 234445555555555555555555555555443221 11111000
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006640 347 FRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIF 426 (637)
Q Consensus 347 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 426 (637)
..+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+. ++|....
T Consensus 229 ------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~ 299 (398)
T PRK10747 229 ------QQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV 299 (398)
T ss_pred ------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH
Confidence 001112222222223344444444444332 2345666666677777777777777777766663 4444222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006640 427 TTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRAT 506 (637)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 506 (637)
++.+....++.+++++..++..+..+ -|...+..+...|.+.|++++|.+.|+.+.+ ..|+...+..+..++.+.
T Consensus 300 --~l~~~l~~~~~~~al~~~e~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~ 374 (398)
T PRK10747 300 --LLIPRLKTNNPEQLEKVLRQQIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRL 374 (398)
T ss_pred --HHHhhccCCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHc
Confidence 22233344677777777777665432 2455566677777777777777777777665 557777767777777777
Q ss_pred CCHHHHHHHHHHHh
Q 006640 507 GLTKEAKRILSKIK 520 (637)
Q Consensus 507 g~~~eA~~~~~~~~ 520 (637)
|+.++|.+++++..
T Consensus 375 g~~~~A~~~~~~~l 388 (398)
T PRK10747 375 HKPEEAAAMRRDGL 388 (398)
T ss_pred CCHHHHHHHHHHHH
Confidence 77777777766553
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=3.9e-11 Score=114.27 Aligned_cols=366 Identities=13% Similarity=0.078 Sum_probs=206.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHH
Q 006640 139 DPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNV 218 (637)
Q Consensus 139 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 218 (637)
..|...+-.....+.+.|....|+..|...... -+..|.+.+...--..+.+.+..+...... ......=-.
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~~----~~h~M~~~F 232 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLPS----DMHWMKKFF 232 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCcc----cchHHHHHH
Confidence 444444444444555566666676666666543 122333333322222222222222111110 000111122
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CChhhHHHHHHHHHHc
Q 006640 219 LVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQ--PNGRTCGIIISGYCKE 296 (637)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~ 296 (637)
+..++....+.++++.-.+.....|++.+...-+....+.....++++|+.+|+++.+..+- .|..+|+.++ |.+.
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~ 310 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHh
Confidence 33455555566677776667777666655555555555666667777777777777665321 1344555443 2222
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 006640 297 GKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIF 376 (637)
Q Consensus 297 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 376 (637)
.+-. +.++.+-...--+-.+.|...+.+-|+-.++.+.|...|+...+.++ .....|+.+..-|....+...|++.+
T Consensus 311 ~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 311 DKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred hhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHH
Confidence 2211 11111111100123344556666666666777777777777777653 34566777777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006640 377 DDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSP 456 (637)
Q Consensus 377 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 456 (637)
+..++-. +.|-..|-.|.++|.-.+...-|+-.|++..+.. |.|...|.+|+.+|.+.++.++|++.|+.....|-.
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt- 464 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT- 464 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-
Confidence 7777654 4466777777777777777777777777777653 556777777777777777777777777777765532
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006640 457 NLKTFETLMWGYSEARQPWRAEEILQIMKA----FGVHPQ--KSTFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 457 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
+...+..|...+-+.++..+|...|++-.+ .|..-+ .....-+..-+.+.+++++|..+.....
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 556677777777777777777777665532 232222 1122234455667777777777665553
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=3.6e-13 Score=127.12 Aligned_cols=428 Identities=12% Similarity=0.068 Sum_probs=278.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHH
Q 006640 113 LLAALTIQKRFNSIHSIMSQVEENGMDPDSIFF-NAVINAFSESGNMEEAMDTFWKMKESGLTPT----TSTYNTLIKGY 187 (637)
Q Consensus 113 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~ 187 (637)
|..-|....-..+|+..|+-+.+...-|+.-.. ..+...+.+..++.+|+++|+-....-+..+ ....+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 344455555678888888888877666665332 3345667788899999999987765422222 22344455567
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------------CCHHHHHHHH
Q 006640 188 GIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMK------------PDVVTYNTIA 255 (637)
Q Consensus 188 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~------------~~~~~~~~li 255 (637)
.+.|+++.|+..|+...+.. |+..+-..|+-++..-|+.++..+.|.+|+..-.. |+....+.-+
T Consensus 287 iq~gqy~dainsfdh~m~~~---pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEA---PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EecccchhhHhhHHHHHHhC---ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 88999999999999998864 88888777888888889999999999999865322 2333333222
Q ss_pred -----HHHHHcC--CHHHHHHHHHHHHHCCCCCChhh---H------------------HHHHHHHHHcCCHHHHHHHHH
Q 006640 256 -----TAYAQNG--EADQAEEVIVEMEHNGVQPNGRT---C------------------GIIISGYCKEGKIKEALRFAR 307 (637)
Q Consensus 256 -----~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~---~------------------~~li~~~~~~g~~~~A~~~~~ 307 (637)
.-..+.+ +.++++-.-.+++..-+.|+... | ..-..-|.+.|+++.|+++++
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 1111111 12222222222222112222110 0 111346889999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHH-HHHH-cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 006640 308 TMKEYGVHPNLVIFNLLIK-GFVE-IMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIK 385 (637)
Q Consensus 308 ~~~~~~~~~~~~~~~~ll~-~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 385 (637)
-+.+..-+.-...-+.+-. -|.+ -.++..|...-+...... .-+....+.-...-...|++++|...+++.+...-.
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas 522 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS 522 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence 8876542222222222222 2233 345666766666655432 223333333333345689999999999999865321
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 386 PDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLM 465 (637)
Q Consensus 386 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 465 (637)
-....-.+.-.+-+.|++++|++.|-++... +..+......+...|....+...|++++-+.... ++-|+..+..|.
T Consensus 523 -c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~ 599 (840)
T KOG2003|consen 523 -CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLA 599 (840)
T ss_pred -HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHH
Confidence 1222233344678899999999999887654 2457778888999999999999999999887764 455788999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc-----------ccccccc
Q 006640 466 WGYSEARQPWRAEEILQIMKAFGVHP-QKSTFLLLAEARRATGLTKEAKRILSKIKNKERTN-----------EMEAEED 533 (637)
Q Consensus 466 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~-----------~~~~~~~ 533 (637)
..|-+.|+...|.+++-.-- ..-| +.++..-+...|....-++.|+.+|++..-..|.. ..-++.+
T Consensus 600 dlydqegdksqafq~~ydsy--ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyq 677 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSY--RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQ 677 (840)
T ss_pred HHhhcccchhhhhhhhhhcc--cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHH
Confidence 99999999999998865432 2334 45677777777888888999999999986444431 2346777
Q ss_pred chHHHHHHHHhhhccC
Q 006640 534 IPVESLERLYHKEATT 549 (637)
Q Consensus 534 ~a~~~~e~l~~~~~~~ 549 (637)
.|...++.+-..=|.+
T Consensus 678 ka~d~yk~~hrkfped 693 (840)
T KOG2003|consen 678 KAFDLYKDIHRKFPED 693 (840)
T ss_pred HHHHHHHHHHHhCccc
Confidence 7777776665444444
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.64 E-value=1.4e-12 Score=133.13 Aligned_cols=260 Identities=11% Similarity=0.026 Sum_probs=134.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 006640 255 ATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDR 334 (637)
Q Consensus 255 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 334 (637)
..++.+.|+++.|.+.+.+..+....+...........+...|+++.|...++.+.+.. +.+...+..+...+.+.|++
T Consensus 125 A~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~ 203 (409)
T TIGR00540 125 AEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAW 203 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhH
Confidence 33444444444444444444332111111122223444444555555555555544443 23344444444555555555
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---HHcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCHHHH
Q 006640 335 DGVDEVLALMKEFRVNPDVITYS-TIMNAW---STAGFMDKCKEIFDDMGKAG---IKPDAHAYSILAKGYVREQEPEKA 407 (637)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~-~li~~~---~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A 407 (637)
+++.+.+..+.+.++. +...+. .-..++ ...+..+.+.+.+..+.+.. .+.+...+..++..+...|+.++|
T Consensus 204 ~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A 282 (409)
T TIGR00540 204 QALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSA 282 (409)
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHH
Confidence 5555555555444322 111111 111111 11112222222333333221 113666777777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHH
Q 006640 408 EELLMTMIESGFHPNVVI---FTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNL--KTFETLMWGYSEARQPWRAEEILQ 482 (637)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~ 482 (637)
.+++++..+.. ||... ...........++.+.+++.+++..+... -|+ ....++...|.+.|++++|.+.|+
T Consensus 283 ~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p-~~~~~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 283 QEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD-DKPKCCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 77777777652 33221 11122222344667777777777766421 133 456677778888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 483 IMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 483 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
........|+.+.+..+..++.+.|+.++|.+++++.
T Consensus 360 ~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 360 NVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5433346677777778888888888888888887765
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=2.5e-12 Score=131.21 Aligned_cols=289 Identities=12% Similarity=0.039 Sum_probs=190.0
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006640 189 IAGKPEESVKLLDLMSREGNVKPN-LRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQA 267 (637)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 267 (637)
..|+++.|.+.+.+..+.. |+ ...+-....++...|+.+.|..++.+..+....++..........+...|+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~~---~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA---AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4677777777777665542 33 3334444566667777777777777766542222222333346667777777777
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHH---HHcCCHhHHHHHHHH
Q 006640 268 EEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFN-LLIKGF---VEIMDRDGVDEVLAL 343 (637)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ll~~~---~~~~~~~~a~~~~~~ 343 (637)
...++.+.+..+ .+..++..+...|.+.|++++|.+.+..+.+.++. +...+. ....++ ...+..+...+.+..
T Consensus 173 l~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 777777776643 34566777777777778887777777777776533 222221 111111 222222222334444
Q ss_pred HHhCCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHH--HHHcCCHHHHHHHHHHHHHC
Q 006640 344 MKEFRV---NPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHA-YSILAKG--YVREQEPEKAEELLMTMIES 417 (637)
Q Consensus 344 ~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~--~~~~g~~~~A~~~~~~~~~~ 417 (637)
+.+..+ +.+...+..+...+...|+.++|.+++++..+.. ||... ...++.. ....++.+.+.+.+++..+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 333221 2377888888889999999999999999988864 33321 0012222 23457788899999888876
Q ss_pred CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006640 418 GFHPNV--VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 418 ~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
. +.|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++..
T Consensus 329 ~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 329 V-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred C-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3 5566 67789999999999999999999964443356899888899999999999999999998753
No 40
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=4.1e-12 Score=121.53 Aligned_cols=418 Identities=12% Similarity=0.070 Sum_probs=251.2
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006640 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPS-LVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 150 (637)
...+-...+-+.++|++++|++.|.+.++. .|| +.-|.....+|...|+++++.+.-.+.++.+ +.-+..+..-..
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRAS 191 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHH
Confidence 344555678889999999999999999984 677 7788889999999999999998887777754 333556677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH--------HHHHh--cCCCCCCHHHHHHHH
Q 006640 151 AFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLL--------DLMSR--EGNVKPNLRTYNVLV 220 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~--------~~m~~--~~~~~~~~~~~~~li 220 (637)
++-..|++++|+.=. +..++..++....-.-.+.+++ .+-.+ ...+-|+.....+..
T Consensus 192 A~E~lg~~~eal~D~-------------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf 258 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDV-------------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYF 258 (606)
T ss_pred HHHhhccHHHHHHhh-------------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHH
Confidence 788888888776322 2222222222222222222222 21111 112334444444333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHC---CCCCC---------hhhHH
Q 006640 221 RAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQ-NGEADQAEEVIVEMEHN---GVQPN---------GRTCG 287 (637)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~---~~~~~---------~~~~~ 287 (637)
..+...-. ..+...+-..|...-..+=..+.. ...+..|...+.+-... ....+ ..+..
T Consensus 259 ~sF~~~~~--------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~ 330 (606)
T KOG0547|consen 259 GSFHADPK--------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALL 330 (606)
T ss_pred hhcccccc--------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHH
Confidence 33211000 000000000011000001000110 01222232222221100 00001 11222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 006640 288 IIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAG 367 (637)
Q Consensus 288 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 367 (637)
.....+.-.|+.-.|..-|+..++... .+...|--+..+|....+.++....|....+.++ .++.+|-.-...+.-.+
T Consensus 331 ~~gtF~fL~g~~~~a~~d~~~~I~l~~-~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~ 408 (606)
T KOG0547|consen 331 LRGTFHFLKGDSLGAQEDFDAAIKLDP-AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQ 408 (606)
T ss_pred HhhhhhhhcCCchhhhhhHHHHHhcCc-ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHH
Confidence 222334456788888888888887652 2233366677778888888888888888877663 35556666666667778
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006640 368 FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFD 447 (637)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 447 (637)
++++|..-|++.+... +.+...|--+.-+..+.+.++++...|++.++. +|.-+..|+.....+...+++++|.+.|+
T Consensus 409 q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 409 QYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 8888888888887754 335566666666667888888888888888876 56677888888888888888999998888
Q ss_pred HHHHCCCC-----CCHHHH--HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 448 KMCEHGVS-----PNLKTF--ETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS-TFLLLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 448 ~m~~~~~~-----p~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
..++.... .+...+ -.++..=+ .+++..|..++++..+ +.|..+ .|..|.....+.|+.++|+++|++.
T Consensus 487 ~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 487 KAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88764211 112222 12222222 3778888888888876 556644 7888888888889999999998876
Q ss_pred h
Q 006640 520 K 520 (637)
Q Consensus 520 ~ 520 (637)
.
T Consensus 564 a 564 (606)
T KOG0547|consen 564 A 564 (606)
T ss_pred H
Confidence 4
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.63 E-value=3.7e-12 Score=129.14 Aligned_cols=289 Identities=12% Similarity=0.091 Sum_probs=186.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHH--HHHHHHHhcCCHH
Q 006640 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTL-IKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYN--VLVRAWCNEKNIT 230 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~--~li~~~~~~g~~~ 230 (637)
..|+++.|.+.+....+.. +++..+..+ .....+.|+++.|.+.+.++.+. .|+..... .....+...|+++
T Consensus 96 ~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHH
Confidence 3699999999888876642 223333333 45557899999999999999875 35543322 3467889999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHH-HHHHHcCCHHHHHHHHHHH
Q 006640 231 EAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIII-SGYCKEGKIKEALRFARTM 309 (637)
Q Consensus 231 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~ 309 (637)
.|...++++.+.. +-++.....+...|.+.|++++|.+++..+.+.+..+ ......+- .+|
T Consensus 171 ~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~---------------- 232 (398)
T PRK10747 171 AARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD-EEHRAMLEQQAW---------------- 232 (398)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH----------------
Confidence 9999999999875 4467888899999999999999999999999876532 22121110 111
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 006640 310 KEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAH 389 (637)
Q Consensus 310 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 389 (637)
..++.......+.+...++++.+.+. .+.++.....+..++...|+.++|..++.+..+. +++..
T Consensus 233 ------------~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~ 297 (398)
T PRK10747 233 ------------IGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER 297 (398)
T ss_pred ------------HHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH
Confidence 01111111112223333344443222 1335556666666777777777777777766663 34442
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006640 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYS 469 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 469 (637)
.. ++.+....++.+++++..+...+.. |.|+..+..+...|...|++++|.+.|+.+.+. .|+..++..+..++.
T Consensus 298 l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~ 372 (398)
T PRK10747 298 LV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALD 372 (398)
T ss_pred HH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHH
Confidence 22 2223334577777777777766653 555666667777777777777777777777763 467777777777777
Q ss_pred hcCChhHHHHHHHHHH
Q 006640 470 EARQPWRAEEILQIMK 485 (637)
Q Consensus 470 ~~g~~~~A~~~~~~m~ 485 (637)
+.|+.++|.+++++..
T Consensus 373 ~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 373 RLHKPEEAAAMRRDGL 388 (398)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 7777777777776653
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=4.6e-15 Score=143.71 Aligned_cols=262 Identities=13% Similarity=0.122 Sum_probs=104.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006640 77 KLMNSLIERGKPQEAQAIFNNLIEGG-HKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSES 155 (637)
Q Consensus 77 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 155 (637)
.+...+.+.|++++|++++....... .+.|+.-|..+...+...++++.|...++++...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 35677788899999999886554432 23344555555556667788888998888888765 4456667777776 688
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006640 156 GNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNV 235 (637)
Q Consensus 156 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 235 (637)
+++++|.+++++..+.. ++...+..++..+...++++++.++++.+......+.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888887766543 4566677788888888888888888888776544556777888888888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 006640 236 MHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVH 315 (637)
Q Consensus 236 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 315 (637)
+++.++.. +.|....+.++..+...|+.+++.+++....+.. +.|...+..+..+|...|+.++|+..|++..+.. +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 88888763 2256777788888888888888888887776653 3456677788888888888888888888887754 5
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 006640 316 PNLVIFNLLIKGFVEIMDRDGVDEVLALMK 345 (637)
Q Consensus 316 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 345 (637)
.|+.+...+..++...|+.++|..+..++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 577777888888888888888887776653
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.61 E-value=4.3e-15 Score=143.96 Aligned_cols=257 Identities=16% Similarity=0.147 Sum_probs=59.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 006640 220 VRAWCNEKNITEAWNVMHKMAASG-MKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGK 298 (637)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 298 (637)
...+.+.|++++|++++++..... .+.|...|..+...+...++++.|...++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 444444455555555443322221 1122233333334444444555555555554443221 23333334333 34445
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 006640 299 IKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR-VNPDVITYSTIMNAWSTAGFMDKCKEIFD 377 (637)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 377 (637)
+++|.+++....+. .++...+...+..+...++++.+..+++.+.... .+.+...|..+...+.+.|+.++|+..++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555444443322 1233334444444444444444444444433211 12334444444444445555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006640 378 DMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPN 457 (637)
Q Consensus 378 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 457 (637)
+.++.. +.|......++..+...|+.+++.+++....+.. +.|+..|..+..+|...|+.++|+..|++..+... .|
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p-~d 247 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP-DD 247 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST-T-
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc-cc
Confidence 544432 1134444444444444455554444444444332 33334444444555555555555555555444321 14
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHH
Q 006640 458 LKTFETLMWGYSEARQPWRAEEILQI 483 (637)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 483 (637)
+.....+..++...|+.++|.++.++
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHHHT--------------
T ss_pred cccccccccccccccccccccccccc
Confidence 44444444455555555555444443
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.8e-10 Score=109.85 Aligned_cols=381 Identities=14% Similarity=0.097 Sum_probs=269.5
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHH
Q 006640 103 HKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTT-STYN 181 (637)
Q Consensus 103 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~ 181 (637)
...|.+.+-.....+.+.|....|.+.|...+..- |.....|..|.... .+.+.+. .....++..+. ..--
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~~~----~l~~~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEILS----ILVVGLPSDMHWMKKF 231 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHHHH----HHHhcCcccchHHHHH
Confidence 34455555555566667788888888888776543 55555665554433 2233322 22221111011 1112
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHH
Q 006640 182 TLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGM--KPDVVTYNTIATAYA 259 (637)
Q Consensus 182 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~ 259 (637)
-+..++-...+.++++.-.+.....| ++.+...-+....+.-...++++|+.+|+++.+... --|..+|+.++- .
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~g-f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v 308 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVG-FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--V 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--H
Confidence 34566767778889988888888876 555555555566667788999999999999998731 125677776653 3
Q ss_pred HcCCHHH---HHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhH
Q 006640 260 QNGEADQ---AEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDG 336 (637)
Q Consensus 260 ~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 336 (637)
++.+-.- |..++ .+ . +--+.|+..+.+-|.-.++.++|..+|++..+.+ +.....|+.+..-|....+...
T Consensus 309 ~~~~skLs~LA~~v~-~i--d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 309 KNDKSKLSYLAQNVS-NI--D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred HhhhHHHHHHHHHHH-Hh--c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHH
Confidence 3332221 22221 11 1 2245778888899999999999999999999876 5567789999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 337 VDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
|.+.++...+.. +.|-..|-.|..+|.-.+...-|+-.|++..... +.|...|.+|...|.+.+++++|++.|.....
T Consensus 383 Ai~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 383 AIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 999999999986 4588999999999999999999999999998864 56899999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 006640 417 SGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE----HGVSPNLKTF---ETLMWGYSEARQPWRAEEILQIMKAFGV 489 (637)
Q Consensus 417 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 489 (637)
.| ..+...+..+...|-+.++.++|...|++-.+ .|.. +..|. .-|..-+.+.+++++|..+.......
T Consensus 461 ~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~-~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~-- 536 (559)
T KOG1155|consen 461 LG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEI-DDETIKARLFLAEYFKKMKDFDEASYYATLVLKG-- 536 (559)
T ss_pred cc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--
Confidence 76 44668999999999999999999999988765 2332 33222 22444555666776666554433221
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 006640 490 HPQKSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 490 ~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
.-..+||..+++.+...
T Consensus 537 ----------------~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 537 ----------------ETECEEAKALLREIRKI 553 (559)
T ss_pred ----------------CchHHHHHHHHHHHHHh
Confidence 23457777777776543
No 45
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=1.4e-09 Score=104.05 Aligned_cols=418 Identities=11% Similarity=0.049 Sum_probs=313.7
Q ss_pred cCcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 006640 68 SCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLV-TYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
..+++..|..-+..=.++.....|+.++++.+.. .|-+. .|.-.+..--..|+...|.++|++-.+ ..|+...|.
T Consensus 103 d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~ 178 (677)
T KOG1915|consen 103 DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWL 178 (677)
T ss_pred ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHH
Confidence 3567888988999999999999999999999874 34332 344445455567999999999998766 489999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHh
Q 006640 147 AVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREG-NVKPNLRTYNVLVRAWCN 225 (637)
Q Consensus 147 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~~li~~~~~ 225 (637)
+.|..=.+-..++.|..++++.+-. .|++.+|......-.++|....|..+|+...+.- .-..+...+.+....-.+
T Consensus 179 sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~ 256 (677)
T KOG1915|consen 179 SFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEER 256 (677)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998864 4899999999999999999999999999887642 111123345555555567
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHH--------HHHHHHCCCCCChhhHHHHHHHHHH
Q 006640 226 EKNITEAWNVMHKMAASGMKPD--VVTYNTIATAYAQNGEADQAEEV--------IVEMEHNGVQPNGRTCGIIISGYCK 295 (637)
Q Consensus 226 ~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~--------~~~~~~~~~~~~~~~~~~li~~~~~ 295 (637)
+..++.|.-+|+-.++. ++.+ ...|......--+-|+....... ++.+++.+ +.|-.+|-..++.-..
T Consensus 257 qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~ 334 (677)
T KOG1915|consen 257 QKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEES 334 (677)
T ss_pred HHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHh
Confidence 88899999999988875 2333 34454444444445665444332 34444443 3577888888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH--HHHHHHH--------HHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-
Q 006640 296 EGKIKEALRFARTMKEYGVHPNL--VIFNLLI--------KGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWS- 364 (637)
Q Consensus 296 ~g~~~~A~~~~~~~~~~~~~~~~--~~~~~ll--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~- 364 (637)
.|+.+...++|++.+..- +|-. ..|.-.| -.-....+.+.+.++++..++. ++...+|+.-+=-.|+
T Consensus 335 ~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~ 412 (677)
T KOG1915|consen 335 VGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQ 412 (677)
T ss_pred cCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHH
Confidence 999999999999998763 4421 1222111 1123567888899999988874 4455666665544443
Q ss_pred ---HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006640 365 ---TAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDR 441 (637)
Q Consensus 365 ---~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 441 (637)
++.++..|.+++...+. ..|-..++...|..-.+.++++.+.+++++.++-+ |.|-.+|......-...|+.+.
T Consensus 413 feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdR 489 (677)
T KOG1915|consen 413 FEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDR 489 (677)
T ss_pred HHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHH
Confidence 67889999999998774 47889999999999999999999999999999976 6788899999988889999999
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 442 AIEVFDKMCEHG-VSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLA 500 (637)
Q Consensus 442 A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 500 (637)
|..+|+-++... +......|-+.|..=...|.++.|..+++++.+. .+-...|..++
T Consensus 490 aRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA 547 (677)
T KOG1915|consen 490 ARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFA 547 (677)
T ss_pred HHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHH
Confidence 999999998752 2223446777777778899999999999999763 33333555444
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=8.9e-13 Score=131.20 Aligned_cols=286 Identities=17% Similarity=0.091 Sum_probs=226.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHHcCCHHHHHH
Q 006640 227 KNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGV--QPNGRTCGIIISGYCKEGKIKEALR 304 (637)
Q Consensus 227 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~ 304 (637)
-+..+|...|.++... +.-+..+...+..+|...+++++|+++|+.+.+... -.+..+|.+.+-.+-+ +-++.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 4567899999986554 333446667888999999999999999999877531 1245667666554422 22333
Q ss_pred HH-HHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 006640 305 FA-RTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAG 383 (637)
Q Consensus 305 ~~-~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 383 (637)
++ +.+.+.. +..+.+|.++.+.|.-.++.+.|++.|+......+ ....+|+.+..-+.....+|.|...|+..+...
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 33 3333332 66788999999999999999999999999988652 277889988888899999999999999988653
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006640 384 IKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFET 463 (637)
Q Consensus 384 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 463 (637)
+.+-.+|--|...|.|+++++.|+-.|+++.+.+ |.+.+....++..+.+.|+.++|+++|+++...+.+ |+..--.
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 2244566678889999999999999999999876 678888889999999999999999999999987654 6666556
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhccc
Q 006640 464 LMWGYSEARQPWRAEEILQIMKAFGVHPQKS-TFLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
-+..+...++.++|+..++++++ +.|+.. .+..++..|.+.|+.+.|..-|.-+....|
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 66778888999999999999988 778765 677899999999999999988877765544
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=5.2e-11 Score=108.36 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=22.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 361 NAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 361 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
+.....|+++.|.+.++.+.+.+..--..+...|..+|...|+.++....+.++.+
T Consensus 222 ~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 222 RVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33344444444444444444432222233333444444444444444444444443
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=9.6e-11 Score=106.64 Aligned_cols=219 Identities=14% Similarity=0.139 Sum_probs=113.0
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCChH
Q 006640 121 KRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPT------TSTYNTLIKGYGIAGKPE 194 (637)
Q Consensus 121 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~------~~~~~~li~~~~~~g~~~ 194 (637)
.+.++|.++|-+|.+.. +.+..+.-+|.+.|-+.|.++.|+++.+.+.++ || ..+...|..-|...|-+|
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 45666666666666543 444555566666666666666666666666554 22 122334455566666666
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHH
Q 006640 195 ESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDV----VTYNTIATAYAQNGEADQAEEV 270 (637)
Q Consensus 195 ~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~ 270 (637)
.|..+|..+.+.+. --.....-|+..|-...+|++|+++-+++.+.+-.+.. ..|.-|...+....+.+.|..+
T Consensus 125 RAE~~f~~L~de~e--fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 125 RAEDIFNQLVDEGE--FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred HHHHHHHHHhcchh--hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 66666666655431 22344555666666666666666666655554433221 2233444444444555555555
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 006640 271 IVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKE 346 (637)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 346 (637)
+.+..+.+. ..+..--.+.+.+...|+++.|++.++.+.+.+..--..+...+..+|.+.|+.++....+..+.+
T Consensus 203 l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 203 LKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555544322 122333334445555555555555555555443222233444444455555555555444444444
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=6.2e-12 Score=125.30 Aligned_cols=282 Identities=11% Similarity=0.071 Sum_probs=156.2
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHH-H
Q 006640 123 FNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGL--TPTTSTYNTLIKGYGIAGKPEESVK-L 199 (637)
Q Consensus 123 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~-~ 199 (637)
..+|...|.+.... +.-+..+...+..+|...+++++|.++|+.+.+..+ ..+...|.+.+--+- + +-++. +
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~-~v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---D-EVALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---h-hHHHHHH
Confidence 45555666553322 233334555566666666666666666666655421 113344444443221 1 11111 1
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006640 200 LDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKP-DVVTYNTIATAYAQNGEADQAEEVIVEMEHNG 278 (637)
Q Consensus 200 ~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 278 (637)
-+.+.... +..+.+|-++..+|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..+...
T Consensus 410 aq~Li~~~--~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 410 AQDLIDTD--PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHhhC--CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 12222221 334566666666666666666666666666654 23 45666666666666666666666666655432
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHH
Q 006640 279 VQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYST 358 (637)
Q Consensus 279 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 358 (637)
. .+-..|.-+.-.|.+.++++.|.-.|+++.+.+ +.+.+....+...+-+.|+.++|+.++++......+ |+..---
T Consensus 486 ~-rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 486 P-RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred c-hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 1 122334445566666666666666666666554 445555566666666666666666666666655432 3333334
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006640 359 IMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIES 417 (637)
Q Consensus 359 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 417 (637)
.+..+...+++++|+..++++.+. ++.+..++..++..|.+.|+.+.|+.-|.-+.+.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 444555666677777777666654 2334556666666677777777776666666654
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.52 E-value=1.9e-10 Score=108.11 Aligned_cols=291 Identities=14% Similarity=0.151 Sum_probs=143.8
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006640 190 AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEE 269 (637)
Q Consensus 190 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 269 (637)
.|++.+|.++..+-.+.+ +.....|..-+.+.-+.|+.+.+-.++.+.-+.--.++...+-+..+.....|++..|..
T Consensus 97 eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 566777766666655543 222344444555555666666666666666554224445555556666666666666666
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCC
Q 006640 270 VIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRV 349 (637)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 349 (637)
-..++.+.+. .+..+......+|.+.|++.....++..+.+.+.-.+...-..
T Consensus 175 ~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l-------------------------- 227 (400)
T COG3071 175 NVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL-------------------------- 227 (400)
T ss_pred HHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH--------------------------
Confidence 6666665543 3445566666666666666666666666666654333211000
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006640 350 NPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTI 429 (637)
Q Consensus 350 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 429 (637)
...+|..+++-....+..+.-...++..... .+.++..-.+++.-+.++|+.++|.++..+..+.+..|.. ..
T Consensus 228 --e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~ 300 (400)
T COG3071 228 --EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CR 300 (400)
T ss_pred --HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HH
Confidence 0112233333222222223323333333221 1223444444445555555555555555555544333331 11
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006640 430 ISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLT 509 (637)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 509 (637)
.-.+.+-++...-++..++-.+.- +-++..+.+|...|.+.+.|.+|.+.|+...+ ..|+..+|.-+.+++.+.|+.
T Consensus 301 ~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 301 LIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEP 377 (400)
T ss_pred HHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCCh
Confidence 112334444444444444443321 11334455555555555555555555554443 445555555555555555555
Q ss_pred HHHHHHHHHH
Q 006640 510 KEAKRILSKI 519 (637)
Q Consensus 510 ~eA~~~~~~~ 519 (637)
.+|.+..++.
T Consensus 378 ~~A~~~r~e~ 387 (400)
T COG3071 378 EEAEQVRREA 387 (400)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 51
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=3.8e-10 Score=110.41 Aligned_cols=455 Identities=11% Similarity=0.042 Sum_probs=282.5
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH--cCC----------
Q 006640 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEE--NGM---------- 138 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~---------- 138 (637)
++...--+++.+.-.|++..|..+...-.- ...|..+......++.+..++++|..++..... ..+
T Consensus 48 dp~d~~~~aq~l~~~~~y~ra~~lit~~~l--e~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~ 125 (611)
T KOG1173|consen 48 DPADIYWLAQVLYLGRQYERAAHLITTYKL--EKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANT 125 (611)
T ss_pred ChHHHHHHHHHHHhhhHHHHHHHHHHHhhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhce
Confidence 344444466777777777777666554322 234666666667777777788888777762210 000
Q ss_pred -CCCHHH-----------HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHhcCChHHHHHHHHHH
Q 006640 139 -DPDSIF-----------FNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTL---IKGYGIAGKPEESVKLLDLM 203 (637)
Q Consensus 139 -~~~~~~-----------~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m 203 (637)
.+|..- +-.-...|....+.++|...|.+.... |...+..+ +....- ...+-..+|+.+
T Consensus 126 l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~ml--t~~Ee~~ll~~l 199 (611)
T KOG1173|consen 126 LELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----DAKCFEAFEKLVSAHML--TAQEEFELLESL 199 (611)
T ss_pred eccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----chhhHHHHHHHHHHHhc--chhHHHHHHhcc
Confidence 011000 000012233444566666666666554 33333332 222211 111222233221
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh
Q 006640 204 SREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNG 283 (637)
Q Consensus 204 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 283 (637)
.-.-....+......+.........-++....-.+..-.+..-+........+-+...+++.+..++++.+.+... +..
T Consensus 200 ~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~ 278 (611)
T KOG1173|consen 200 DLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDP-FHL 278 (611)
T ss_pred cHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCc
Confidence 1000001122222222221110000000000000011112334556666677777888999999999998887643 566
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006640 284 RTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAW 363 (637)
Q Consensus 284 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 363 (637)
..+..-|.++...|+..+-..+-.++.+.- |....+|-++.--|...|...+|.+.|........ .-...|-.....|
T Consensus 279 ~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsf 356 (611)
T KOG1173|consen 279 PCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSF 356 (611)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHh
Confidence 666666778888888887777777777653 56677898888888888999999999988766542 2346788888899
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006640 364 STAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAI 443 (637)
Q Consensus 364 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 443 (637)
+..|..++|+..+....+.-.. ..--+--+.--|.+.++.+.|.+.|.+..... |.|+...+-+.-.....+.+.+|.
T Consensus 357 a~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~ 434 (611)
T KOG1173|consen 357 AGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEAL 434 (611)
T ss_pred hhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHH
Confidence 9999999999888877663111 11112223445778899999999999988764 778888888888888888999999
Q ss_pred HHHHHHHHC--CCC---C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006640 444 EVFDKMCEH--GVS---P-NLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILS 517 (637)
Q Consensus 444 ~~~~~m~~~--~~~---p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~ 517 (637)
.+|+..+.. .+. + -..+++.|+.+|.+.++.++|+..+++..... .-+..++..++-++...|+++.|...+.
T Consensus 435 ~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fh 513 (611)
T KOG1173|consen 435 KYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFH 513 (611)
T ss_pred HHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHH
Confidence 999887631 111 1 34468888999999999999999999887632 2356788889889999999999999999
Q ss_pred HHhhccccccccccccchHHHHHHHHhh
Q 006640 518 KIKNKERTNEMEAEEDIPVESLERLYHK 545 (637)
Q Consensus 518 ~~~~~~~~~~~~~~~~~a~~~~e~l~~~ 545 (637)
+..-..|+ -..+.+.+..+++.
T Consensus 514 KaL~l~p~------n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 514 KALALKPD------NIFISELLKLAIED 535 (611)
T ss_pred HHHhcCCc------cHHHHHHHHHHHHh
Confidence 99887664 23566677777764
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=2.8e-10 Score=107.04 Aligned_cols=292 Identities=12% Similarity=0.117 Sum_probs=179.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006640 155 SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWN 234 (637)
Q Consensus 155 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 234 (637)
.|++..|++...+-.+.+.. ....|..-+.+--+.|+.+.+-..+.+..+.. -.++....-+........|+.+.|..
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHhCCCchhHHH
Confidence 59999999999998887654 34566666777888999999999999998752 13566777888888999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 006640 235 VMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGV 314 (637)
Q Consensus 235 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 314 (637)
-++++.+.+ +..+........+|.+.|++.....++..+.+.+.-.+...-..
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l-------------------------- 227 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL-------------------------- 227 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH--------------------------
Confidence 999998876 44677888899999999999999999999999887544321100
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006640 315 HPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSIL 394 (637)
Q Consensus 315 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 394 (637)
...+|..+++-....+..++....++..... .+.++..-.+++.-+.++|+.++|.++..+..+++..|. .. .
T Consensus 228 --e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~ 300 (400)
T COG3071 228 --EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-R 300 (400)
T ss_pred --HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-H
Confidence 0112222332222222222223333333221 122334444455555555555555555555555543333 11 1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 006640 395 AKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQP 474 (637)
Q Consensus 395 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 474 (637)
.-.+.+-++.+.-++..++-.+.. +.++..+.+|+..|.+++.+.+|...|+...+. .|+..+|+-+..++.+.|++
T Consensus 301 ~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 301 LIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEP 377 (400)
T ss_pred HHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCh
Confidence 112334455555444444444331 344455555555555555566665555555442 35555555555556666665
Q ss_pred hHHHHHHHHHH
Q 006640 475 WRAEEILQIMK 485 (637)
Q Consensus 475 ~~A~~~~~~m~ 485 (637)
.+|.+++++..
T Consensus 378 ~~A~~~r~e~L 388 (400)
T COG3071 378 EEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHH
Confidence 55555555543
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=2.8e-10 Score=109.26 Aligned_cols=351 Identities=11% Similarity=0.040 Sum_probs=207.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006640 111 TTLLAALTIQKRFNSIHSIMSQVEENGMDPD-SIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI 189 (637)
Q Consensus 111 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 189 (637)
-...+-|.++|.+++|++.|.+.+.. .|| +..|.....+|...|++++..+--.+..+.++. -+.++..-.+++-.
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHEQ 195 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHHh
Confidence 34455677899999999999999985 567 888999999999999999998888888876432 34566777778888
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CC--CCCCHHHHHHHHHHHHHcCCHHH
Q 006640 190 AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAA-SG--MKPDVVTYNTIATAYAQNGEADQ 266 (637)
Q Consensus 190 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~g--~~~~~~~~~~li~~~~~~g~~~~ 266 (637)
.|++++|+.-..-..-.+++. |.. ...++.-..+ ..|..-.++-.+ .+ +-|+.....+....+...-
T Consensus 196 lg~~~eal~D~tv~ci~~~F~-n~s-~~~~~eR~Lk----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~---- 265 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQ-NAS-IEPMAERVLK----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP---- 265 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcc-cch-hHHHHHHHHH----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc----
Confidence 888888765333222221111 111 1111111111 111222222222 11 2234333333332221100
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHH----H-cCCHHHHHHHHHHHHHcC---CC---CC------HHHHHHHHHHHH
Q 006640 267 AEEVIVEMEHNGVQPNGRTCGIIISGYC----K-EGKIKEALRFARTMKEYG---VH---PN------LVIFNLLIKGFV 329 (637)
Q Consensus 267 A~~~~~~~~~~~~~~~~~~~~~li~~~~----~-~g~~~~A~~~~~~~~~~~---~~---~~------~~~~~~ll~~~~ 329 (637)
......+.......+..++. . ...+.+|...+.+-.... .. .| ..+...-...+.
T Consensus 266 --------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f 337 (606)
T KOG0547|consen 266 --------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF 337 (606)
T ss_pred --------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence 00000000011111111111 1 011233333222211100 00 01 111111112233
Q ss_pred HcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006640 330 EIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEE 409 (637)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 409 (637)
-.|+..++..-|+..+.....++ ..|--+..+|....+.++..+.|....+.+ +.++.+|..-.+++.-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHH
Confidence 45777788888888877654433 236667777888888888888888888765 3467778777888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 410 LLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
-|++.+... +.+...|-.+..+..+.+.++++...|++.++. ++--+..|+.....+...++++.|.+.|+...+
T Consensus 416 DF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 416 DFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 888888764 556667777777777888888888888888775 334566888888888888888888888888765
No 54
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=2.1e-09 Score=99.06 Aligned_cols=121 Identities=10% Similarity=0.075 Sum_probs=52.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChh
Q 006640 397 GYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETL-MWGYSEARQPW 475 (637)
Q Consensus 397 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~g~~~ 475 (637)
.+.-..++++.+..++.+..--...|... -.+..+++..|++.+|.++|-......++ |..+|.++ .++|.+.++++
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCch
Confidence 33344445555555555544322222222 23445555555555555555544432232 34444333 34445555555
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 006640 476 RAEEILQIMKAFGVHPQKS-TFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 476 ~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
-|++++-++. -..+.- ....+.+.|.+++.+=-|.+.|+.+...
T Consensus 446 lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 446 LAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 5554433221 111111 2223344455555555444444444433
No 55
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.40 E-value=4.2e-08 Score=97.96 Aligned_cols=424 Identities=14% Similarity=0.108 Sum_probs=251.5
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006640 83 IERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAM 162 (637)
Q Consensus 83 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 162 (637)
...|+-++|......-...+ ..+.+.|..+.-.+...+++++|+..|..+++.+ +.|..++.-|.-.-++.++++...
T Consensus 52 ~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHH
Confidence 34567777777766666533 3466777777766666777778888887777765 556667766666666667777666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHH------HHHHhcCCHHHHHHHH
Q 006640 163 DTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLV------RAWCNEKNITEAWNVM 236 (637)
Q Consensus 163 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li------~~~~~~g~~~~A~~~~ 236 (637)
..-.++.+..+. ....|..++.++.-.|+...|..+++...+.....|+...+.-.. ....+.|..++|.+.+
T Consensus 130 ~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 130 ETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 666666654322 455677777777777777778777777766543345554443322 2334566777777666
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH-HHHHcCCHHHHH-HHHHHHHHcC
Q 006640 237 HKMAASGMKPDVV-TYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIIS-GYCKEGKIKEAL-RFARTMKEYG 313 (637)
Q Consensus 237 ~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~-~~~~~~~~~~ 313 (637)
..-... ..|.. .-..-...+.+.+++++|..++..++..+ ||...|...+. ++.+-.+.-+++ .+|....+.
T Consensus 209 ~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~- 283 (700)
T KOG1156|consen 209 LDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK- 283 (700)
T ss_pred HhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-
Confidence 554322 11222 22344556677778888888887777653 45555544433 333333333444 455554432
Q ss_pred CCCCHHH-HHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH----CC-----
Q 006640 314 VHPNLVI-FNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGK----AG----- 383 (637)
Q Consensus 314 ~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~----- 383 (637)
.|.... -..=++......-.+...+.+..+.+.|+++ ++..+.+.|-.-...+-..++...+.. .|
T Consensus 284 -y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 284 -YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred -CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence 111110 0000111111112233445556666666543 334444444322222211222222111 11
Q ss_pred -----CCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006640 384 -----IKPDAHAYS--ILAKGYVREQEPEKAEELLMTMIESGFHPNV-VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVS 455 (637)
Q Consensus 384 -----~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 455 (637)
-+|....|+ -++..|-+.|+++.|...++..+.. .|+. ..|..=...+...|++++|...+++..+.+.
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~- 436 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT- 436 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-
Confidence 145555554 4567788999999999999999876 5554 4556667889999999999999999988653
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHH----HHHH--HHHHHHHcCCHHHHHHHHHHHhh
Q 006640 456 PNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHP--QKS----TFLL--LAEARRATGLTKEAKRILSKIKN 521 (637)
Q Consensus 456 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~----~~~~--l~~~~~~~g~~~eA~~~~~~~~~ 521 (637)
||...=..-..-..++.+.++|.++.....+.|... +.. .|-. =+.+|.|.|++.+|.+-+..+..
T Consensus 437 aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 437 ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred hhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 455544455666778999999999988887666421 111 1222 24678999999999888877753
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=3e-09 Score=104.25 Aligned_cols=284 Identities=10% Similarity=-0.014 Sum_probs=135.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 006640 212 NLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIIS 291 (637)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 291 (637)
+......-..-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+=.++++.- +....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 33333344444444445555555555444432 2233333333334444444444444434444331 233445555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH
Q 006640 292 GYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDK 371 (637)
Q Consensus 292 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 371 (637)
.|.-.|+..+|.++|.+....+ +.=...|-.+...|+-.+..++|...+...-+.-. -...-+--+.--|.+.+.++.
T Consensus 321 YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~-G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP-GCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc-CCcchHHHHHHHHHHhccHHH
Confidence 5555555555555555544322 11123455555555555555555555444332110 010111112223455556666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----C--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006640 372 CKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIES----G--FHPNVVIFTTIISGWCSDGSMDRAIEV 445 (637)
Q Consensus 372 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 445 (637)
|.+.|.+..... +.|+.+.+-+.-.....+.+.+|..+|+..... + ...-..+++.|+.+|.+.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 666665555432 335555555555555555666666666554411 0 001223455566666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006640 446 FDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEAR 503 (637)
Q Consensus 446 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 503 (637)
|++.+.... -|..++.++.-.|...|.++.|.+.|.+... +.|+..+...++..+
T Consensus 478 ~q~aL~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 478 YQKALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 666665432 2555666666666666666666666665443 556655555444433
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=5.2e-10 Score=105.47 Aligned_cols=165 Identities=13% Similarity=0.111 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006640 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA 151 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 151 (637)
...+..+...+...|++++|...|+++.... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3444444455555555555555555444321 1233344444444444444444444444444432 2333344444444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 006640 152 FSESGNMEEAMDTFWKMKESGL-TPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNIT 230 (637)
Q Consensus 152 ~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 230 (637)
+...|++++|...|++...... ......+..+...+...|++++|...|++..... +.+...+..+...+...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHH
Confidence 4444444444444444443211 0112233333334444444444444444443321 222333333334444444444
Q ss_pred HHHHHHHHHH
Q 006640 231 EAWNVMHKMA 240 (637)
Q Consensus 231 ~A~~~~~~~~ 240 (637)
+|...+++..
T Consensus 187 ~A~~~~~~~~ 196 (234)
T TIGR02521 187 DARAYLERYQ 196 (234)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 58
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.39 E-value=1.2e-07 Score=94.54 Aligned_cols=434 Identities=11% Similarity=0.079 Sum_probs=211.6
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006640 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEG-GHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 150 (637)
+..|-.-...+.++|+...-+..|+..+.. -+......|...+.-....+-++.+..+|++.++. ++..-+--|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 345666677778889999999999887763 11123346788888888888888999999988864 3344666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChH---HHHHHHHHHHhcCCCCCC--HHHHHHH
Q 006640 151 AFSESGNMEEAMDTFWKMKESG------LTPTTSTYNTLIKGYGIAGKPE---ESVKLLDLMSREGNVKPN--LRTYNVL 219 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~--~~~~~~l 219 (637)
.+++.+++++|.+.+....... .+.+-..|.-+-...+++-+.- ....++..+... -+| ...|++|
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r---ftDq~g~Lw~SL 254 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR---FTDQLGFLWCSL 254 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc---CcHHHHHHHHHH
Confidence 7888888888888887765321 1113334444444444332221 122233333322 123 2456667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----------------C------CHHHHHHHHHHHHHC
Q 006640 220 VRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQN----------------G------EADQAEEVIVEMEHN 277 (637)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~----------------g------~~~~A~~~~~~~~~~ 277 (637)
..-|.+.|.+++|..+|++....- .+..-|+.+.+.|++- + +++-....|+.+...
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r 332 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR 332 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence 777777777777777766665431 1222222222222211 1 112222223332221
Q ss_pred CC-----------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHcCCHhHHHHH
Q 006640 278 GV-----------QPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHP------NLVIFNLLIKGFVEIMDRDGVDEV 340 (637)
Q Consensus 278 ~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~ll~~~~~~~~~~~a~~~ 340 (637)
.. +.++..|..-+.. ..|+..+-...|.++...- .| -...|..+...|-..|+.+.|..+
T Consensus 333 r~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvi 409 (835)
T KOG2047|consen 333 RPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVI 409 (835)
T ss_pred cchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHH
Confidence 10 1122223222222 1334444444555444321 11 122455555666666666666666
Q ss_pred HHHHHhCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----------------CCHHHHHHHHHHHHH
Q 006640 341 LALMKEFRVNPD---VITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIK-----------------PDAHAYSILAKGYVR 400 (637)
Q Consensus 341 ~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~ 400 (637)
|++..+...+.- ..+|..-..+=.+..+++.|+++.+.....--+ .+..+|..+++.--.
T Consensus 410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES 489 (835)
T ss_pred HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence 666554332211 123333333334445555555555554321000 012334444444445
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHh---cCChhH
Q 006640 401 EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK-TFETLMWGYSE---ARQPWR 476 (637)
Q Consensus 401 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~---~g~~~~ 476 (637)
.|-++....+++++.+..+ .++...-....-+-.+.-++++.++|++-+..-..|+.. .|+..+..+.+ ..+.+.
T Consensus 490 ~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred hccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 5566666666666655432 122222222223334445555555555554443334433 44444443322 124555
Q ss_pred HHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 477 AEEILQIMKAFGVHPQKS--TFLLLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 477 A~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
|..+|++..+ |..|... .|......--+.|....|..+++++
T Consensus 569 aRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 569 ARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6666666555 3334332 2222333333445555555555554
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.38 E-value=6.3e-10 Score=118.06 Aligned_cols=269 Identities=11% Similarity=-0.018 Sum_probs=184.9
Q ss_pred CCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 006640 104 KPSLVTYTTLLAALTI-----QKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE---------SGNMEEAMDTFWKMK 169 (637)
Q Consensus 104 ~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~ 169 (637)
..+...|...+++... .+++++|..+|++.++.. |.+...|..+..+|.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4566666666655322 124678889999988764 4455666666655442 234789999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006640 170 ESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVV 249 (637)
Q Consensus 170 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 249 (637)
+.++. +..++..+...+...|++++|...|++..+.+ |.+...+..+...+...|++++|+..+++..+.... +..
T Consensus 332 ~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~ 407 (553)
T PRK12370 332 ELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAA 407 (553)
T ss_pred hcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chh
Confidence 88654 77888888888889999999999999998875 556778888899999999999999999999886422 223
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006640 250 TYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFV 329 (637)
Q Consensus 250 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 329 (637)
.+..++..+...|++++|...++++.+...+.+...+..+..++...|++++|...+.++.... +.+....+.+...|.
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYC 486 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHh
Confidence 3334455566788999999999888765433345567778888889999999999998876542 233445566666667
Q ss_pred HcCCHhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 006640 330 EIMDRDGVDEVLALMKEFR-VNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAG 383 (637)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 383 (637)
..| +.+...++.+.+.. ..+....+ +-..|.-.|+.+.+... +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 666 46666666654421 11222222 33344556777776666 7776643
No 60
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.37 E-value=6.4e-08 Score=96.70 Aligned_cols=430 Identities=12% Similarity=0.095 Sum_probs=287.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006640 75 MTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE 154 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 154 (637)
+-.++.. .+.+++...+++.+.++.. .+-...|.....-.+...|+.++|....+..++.. ..+.+.|..+.-.+-.
T Consensus 11 F~~~lk~-yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKC-YETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHH-HHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhh
Confidence 3334443 3668888999998888873 34455555555555667889999999888887754 4567788888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006640 155 SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWN 234 (637)
Q Consensus 155 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 234 (637)
..++++|++.|......+.. |...|.-+.-.-++.++++.....-....+.. +.....|..++.++.-.|+...|..
T Consensus 88 dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--PSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999987654 67788888777888899998888887777653 4456789999999999999999999
Q ss_pred HHHHHHHCC-CCCCHHHHHHHH------HHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 006640 235 VMHKMAASG-MKPDVVTYNTIA------TAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFAR 307 (637)
Q Consensus 235 ~~~~~~~~g-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 307 (637)
+++...+.. -.|+...+.... ....+.|.++.|.+.+..-... +......-..-...+.+.+++++|..++.
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 999998764 246665554332 3345678888888877655432 21223344556778899999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHH-HHHHcCCHhHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 006640 308 TMKEYGVHPNLVIFNLLIK-GFVEIMDRDGVD-EVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIK 385 (637)
Q Consensus 308 ~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 385 (637)
.++.. .||..-|...+. ++.+..+..++. .+|....+.-.. .......-++......-.+....++....+.|++
T Consensus 244 ~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 244 RLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred HHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 99887 466665555544 443333333444 556655443211 1111111111111222334445666677777765
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CC----------CCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHH
Q 006640 386 PDAHAYSILAKGYVREQEPEKAEELLMTMIE----SG----------FHPNVVIFTT--IISGWCSDGSMDRAIEVFDKM 449 (637)
Q Consensus 386 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----------~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m 449 (637)
+ ++..+...|-.-...+-..++.-.+.. .| -+|....|+. ++..+-+.|+++.|+.+.+.+
T Consensus 321 ~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 321 S---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred c---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4 444444444322211111111111111 10 1567777764 566788999999999999999
Q ss_pred HHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006640 450 CEHGVSPNLK-TFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 450 ~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
+.+ .|+.+ .|..-.+.+.|.|..++|...+++..+.+ .||...-..-+.-..++.+.++|.++...-.
T Consensus 398 IdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFT 466 (700)
T KOG1156|consen 398 IDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFT 466 (700)
T ss_pred hcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhh
Confidence 885 46655 67777889999999999999999987643 2454444466677788889999988876653
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.37 E-value=1e-09 Score=116.49 Aligned_cols=269 Identities=7% Similarity=-0.021 Sum_probs=196.1
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHHH
Q 006640 139 DPDSIFFNAVINAFSE-----SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI---------AGKPEESVKLLDLMS 204 (637)
Q Consensus 139 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~ 204 (637)
+.+...|...+.+-.. .+++++|...|++..+..+. +...|..+..+|.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4555656555555322 13468999999999987644 55667666665542 244789999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChh
Q 006640 205 REGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGR 284 (637)
Q Consensus 205 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 284 (637)
+.. |.+...+..+...+...|++++|...|++.++.+ +.+...+..+...+...|++++|...+++..+..+. +..
T Consensus 332 ~ld--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~ 407 (553)
T PRK12370 332 ELD--HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAA 407 (553)
T ss_pred hcC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chh
Confidence 875 5678899999999999999999999999999875 335677888999999999999999999999887543 223
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006640 285 TCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWS 364 (637)
Q Consensus 285 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 364 (637)
.+..++..+...|++++|+..++++.+...+.+...+..+...+...|+.++|...+..+.... +.+....+.+...|.
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYC 486 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHh
Confidence 3344555677789999999999998765423355667778888999999999999999876653 224455566666777
Q ss_pred HcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006640 365 TAGFMDKCKEIFDDMGKAG-IKPDAHAYSILAKGYVREQEPEKAEELLMTMIESG 418 (637)
Q Consensus 365 ~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 418 (637)
..| +.|...++.+.+.. ..+....+ +-..|.-.|+.+.+..+ +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 777 47877777766531 12222222 44456667888877776 8887653
No 62
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.37 E-value=2.3e-07 Score=92.50 Aligned_cols=290 Identities=13% Similarity=0.167 Sum_probs=150.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHHc
Q 006640 226 EKNITEAWNVMHKMAASGMKP------DVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPN---GRTCGIIISGYCKE 296 (637)
Q Consensus 226 ~g~~~~A~~~~~~~~~~g~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~ 296 (637)
.|+..+-...+.+..+. +.| -...|..+...|-..|+++.|..+|++..+...+.- ..+|..-..+-.+.
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 34445555555555432 122 124566666777777777777777776655433111 23344444444455
Q ss_pred CCHHHHHHHHHHHHHcCCC-----------------CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHH
Q 006640 297 GKIKEALRFARTMKEYGVH-----------------PNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTI 359 (637)
Q Consensus 297 g~~~~A~~~~~~~~~~~~~-----------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 359 (637)
.+++.|+++.++.....-. .+...|...++.--..|-++....+++.+.+..+.....+.| .
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-y 517 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-Y 517 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-H
Confidence 5666666666655322100 022334444444445566666666666666654432222222 2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHH
Q 006640 360 MNAWSTAGFMDKCKEIFDDMGKAGIKPD-AHAYSILAKGYVR---EQEPEKAEELLMTMIESGFHPNVVI--FTTIISGW 433 (637)
Q Consensus 360 i~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~--~~~li~~~ 433 (637)
...+....-++++.+++++-+..-..|+ -..|+..+.-+.+ ...++.|..+|++..+ +.+|...- |-.....-
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 2223344556666666665444322233 2445555554443 2356777778877777 44443321 11111222
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHcCC
Q 006640 434 CSDGSMDRAIEVFDKMCEHGVSPNL--KTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS---TFLLLAEARRATGL 508 (637)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~g~ 508 (637)
-..|....|+.+++++... +++.. ..|+..|.--...=-+.....+|++..+ .-|+.. ......+.-...|.
T Consensus 597 Ee~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGE 673 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE--SLPDSKAREMCLRFADLETKLGE 673 (835)
T ss_pred HHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhh
Confidence 3457777777777776543 33322 3566665543333334455666666665 345533 33455667778888
Q ss_pred HHHHHHHHHHHhh
Q 006640 509 TKEAKRILSKIKN 521 (637)
Q Consensus 509 ~~eA~~~~~~~~~ 521 (637)
++.|..++.-..+
T Consensus 674 idRARaIya~~sq 686 (835)
T KOG2047|consen 674 IDRARAIYAHGSQ 686 (835)
T ss_pred HHHHHHHHHhhhh
Confidence 8988888876653
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.36 E-value=8.6e-10 Score=103.95 Aligned_cols=204 Identities=12% Similarity=0.094 Sum_probs=173.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 105 PSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLI 184 (637)
Q Consensus 105 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 184 (637)
.....+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|.+.+++..+..+. +...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence 346678888899999999999999999998765 566788899999999999999999999999987644 667888899
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006640 185 KGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEA 264 (637)
Q Consensus 185 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 264 (637)
..+...|++++|.+.|++.......+.....+..+...+...|++++|...+++..... +.+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence 99999999999999999998753233456678888999999999999999999998764 33567888899999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006640 265 DQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 265 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
++|...+++.... .+.+...+..++..+...|+.++|..+.+.+...
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999998876 3345677778888999999999999998887653
No 64
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.35 E-value=3.6e-09 Score=108.77 Aligned_cols=428 Identities=13% Similarity=0.103 Sum_probs=228.7
Q ss_pred cCcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 006640 68 SCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNA 147 (637)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 147 (637)
..|+-++|..+|..|+..|+.+.|- +|.-|.-...+.+...|+.++.+....++.+.+. .|-..+|+.
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 4455599999999999999999988 8988887777777788888888888888776654 577888999
Q ss_pred HHHHHHhcCCHHH---HHHHHHHHHH----CCCCCCHHHH---------------HHHHHHHHhcCChHHHHHHHHHHHh
Q 006640 148 VINAFSESGNMEE---AMDTFWKMKE----SGLTPTTSTY---------------NTLIKGYGIAGKPEESVKLLDLMSR 205 (637)
Q Consensus 148 li~~~~~~g~~~~---A~~~~~~m~~----~~~~~~~~~~---------------~~li~~~~~~g~~~~A~~~~~~m~~ 205 (637)
|..+|...||+.. ..+.++.+.. .|+. ....| ...+....-.|-++.+++++..++.
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv 167 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV 167 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 9999999888654 2222222211 1211 11111 1223333344555555555544443
Q ss_pred cCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChh
Q 006640 206 EGNVKPNLRTYNVLVRAWCN-EKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGR 284 (637)
Q Consensus 206 ~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 284 (637)
.....|..+ .++-+.. ...+++-..+.....+ .|++.+|..++..-...|+.+.|..++.+|.+.|++.+..
T Consensus 168 sa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 168 SAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred ccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 221111111 1222222 1222332222222222 3666677777777677777777777777777777666655
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhH------------------------HHHH
Q 006640 285 TCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDG------------------------VDEV 340 (637)
Q Consensus 285 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~------------------------a~~~ 340 (637)
-|-.|+-+ .++..-+..+++.|.+.|+.|+..|+...+..+..+|.... |.+.
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~ 317 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKR 317 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHH
Confidence 55555444 56666666666666667777766666555544444322111 1111
Q ss_pred HH------------HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHHcCC--
Q 006640 341 LA------------LMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAG--I-KPDAHAYSILAKGYVREQE-- 403 (637)
Q Consensus 341 ~~------------~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~g~-- 403 (637)
++ ...-.|......+|...+. ....|.-+...++-..+..-. . ..++..|..++.-|.+.-+
T Consensus 318 l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~ 396 (1088)
T KOG4318|consen 318 LRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERH 396 (1088)
T ss_pred HHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhh
Confidence 10 0000122222233332222 223455555555555543211 0 1123333333333322111
Q ss_pred --------------------HHHHHHHHHHHHH----------------CCCC-------CCHHHHHHHHHHHHhcCCHH
Q 006640 404 --------------------PEKAEELLMTMIE----------------SGFH-------PNVVIFTTIISGWCSDGSMD 440 (637)
Q Consensus 404 --------------------~~~A~~~~~~~~~----------------~~~~-------~~~~~~~~li~~~~~~g~~~ 440 (637)
..+..++...... .... +-...-+.++..++..-+..
T Consensus 397 ~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~l 476 (1088)
T KOG4318|consen 397 ICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKL 476 (1088)
T ss_pred HHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111100 0000 01112334444555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006640 441 RAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA--FGVHPQKSTFLLLAEARRATGLTKEAKRILSK 518 (637)
Q Consensus 441 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~ 518 (637)
+++..-++.... .-| ..|..|+.-|.+..+.+.|..+.++... ..+..|..-+..+.+++.+.+....+..+++.
T Consensus 477 K~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e 553 (1088)
T KOG4318|consen 477 KILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYE 553 (1088)
T ss_pred HHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhh
Confidence 555444433322 111 4678888888888999999888888742 33445666788899999999999999999988
Q ss_pred Hhhc
Q 006640 519 IKNK 522 (637)
Q Consensus 519 ~~~~ 522 (637)
+...
T Consensus 554 ~ks~ 557 (1088)
T KOG4318|consen 554 DKSS 557 (1088)
T ss_pred hhHH
Confidence 8654
No 65
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=2.4e-07 Score=87.55 Aligned_cols=306 Identities=9% Similarity=0.012 Sum_probs=217.2
Q ss_pred CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hhh
Q 006640 210 KPNLRTYNVLVRAWC--NEKNITEAWNVMHKMAAS-GMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPN-GRT 285 (637)
Q Consensus 210 ~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~ 285 (637)
+|...+...-+.+++ ..++...|...+-.+... -++-|......+...+...|+.++|+..|++....+ |+ ...
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~ 268 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEA 268 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhh
Confidence 333333333444433 334444444444433332 255677888899999999999999999999886542 32 222
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 006640 286 CGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWST 365 (637)
Q Consensus 286 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 365 (637)
.....-.+.+.|+.+....+...+.... .-....|..-+...-..+++..|..+-+..++... .+...+-.-...+..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHh
Confidence 2223344567788888887777776432 12333344444444556777888888777776542 355556556677888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHh-cCCHHHHH
Q 006640 366 AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTII-SGWCS-DGSMDRAI 443 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-~~~~~-~g~~~~A~ 443 (637)
.+++++|.-.|+...... +-+..+|..|+..|...|++.+|.-+-+...+. ++.+..+.+.+. ..|.- ..--++|.
T Consensus 347 ~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred ccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 999999999999987753 457899999999999999999998888776654 355666666664 33332 22357888
Q ss_pred HHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 006640 444 EVFDKMCEHGVSPNLK-TFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 444 ~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
+++++... +.|+.. ..+.+...|...|+.++++.++++... ..||......+.+.+...+.+++|...+..+...
T Consensus 425 kf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 425 KFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 99988877 457755 667778899999999999999999876 7789999999999999999999999999999888
Q ss_pred ccc
Q 006640 523 ERT 525 (637)
Q Consensus 523 ~~~ 525 (637)
.|.
T Consensus 501 dP~ 503 (564)
T KOG1174|consen 501 DPK 503 (564)
T ss_pred Ccc
Confidence 774
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=1.7e-10 Score=104.96 Aligned_cols=233 Identities=15% Similarity=0.097 Sum_probs=196.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 006640 286 CGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWST 365 (637)
Q Consensus 286 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 365 (637)
-+.+..+|.+.|.+.+|.+.|+...+. .|-+.||..+-..|.+..++..|..++.+-.+.- +-|+.....+...+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHH
Confidence 366889999999999999999988876 6778889999999999999999999999887753 3455555677888889
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006640 366 AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEV 445 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 445 (637)
.++.++|.++++...+.. +.++.....+...|.-.+++|.|+..++++.+.| .-++..|+.+.-+|.-.++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHH
Confidence 999999999999998864 4577777778888889999999999999999998 56888999999999999999999999
Q ss_pred HHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 006640 446 FDKMCEHGVSPNL--KTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 446 ~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
|++....--.|+. ..|-.+.......|++.-|.+.|+-.... .|+ .+.++.+.-+-.+.|++++|..+++.+...
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 9999865444443 47888888888999999999999987653 333 568888888889999999999999998777
Q ss_pred ccc
Q 006640 523 ERT 525 (637)
Q Consensus 523 ~~~ 525 (637)
.|+
T Consensus 459 ~P~ 461 (478)
T KOG1129|consen 459 MPD 461 (478)
T ss_pred Ccc
Confidence 664
No 67
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.34 E-value=4.2e-08 Score=99.89 Aligned_cols=408 Identities=14% Similarity=0.076 Sum_probs=233.5
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHH
Q 006640 103 HKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTT-STYN 181 (637)
Q Consensus 103 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~ 181 (637)
+.-|+..|..+.-++...|+++.+.+.|++....- -.....|..+...|...|.-..|..+++.-......|+. ..+.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 34466666666666677777777777777665432 234456666666777777766777776665544322332 2232
Q ss_pred HHHHHHHh-cCChHHHHHHHHHHHhcCC---CCCCHHHHHHHHHHHHh-----------cCCHHHHHHHHHHHHHCCCCC
Q 006640 182 TLIKGYGI-AGKPEESVKLLDLMSREGN---VKPNLRTYNVLVRAWCN-----------EKNITEAWNVMHKMAASGMKP 246 (637)
Q Consensus 182 ~li~~~~~-~g~~~~A~~~~~~m~~~~~---~~~~~~~~~~li~~~~~-----------~g~~~~A~~~~~~~~~~g~~~ 246 (637)
..-..|.+ .+..+++++.-.+.....+ -......+..+.-+|.. .....++++.+++..+.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~- 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT- 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 22233332 3445555554444433100 01223344444444432 12234666667766655421
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006640 247 DVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIK 326 (637)
Q Consensus 247 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 326 (637)
|+.....+.--|+..++++.|.+...+..+.+...+...|..+.-.+...+++.+|+.+.+.....- ..|......-+.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhh
Confidence 2222222444566667777777777777666555566677777777777777777777766665431 111111111111
Q ss_pred HHHHcCCHhHHHHHHHHHHh----------------------------CCCCCCHHHHHHHHHHHH-HcCChHHHHHHHH
Q 006640 327 GFVEIMDRDGVDEVLALMKE----------------------------FRVNPDVITYSTIMNAWS-TAGFMDKCKEIFD 377 (637)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~----------------------------~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~ 377 (637)
.-...++.+++......+.. ..+.....++..+..-.. +.........
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~--- 632 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK--- 632 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc---
Confidence 11112222222222111110 011111222222222111 1111110001
Q ss_pred HHHHCCCC--CC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006640 378 DMGKAGIK--PD------AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKM 449 (637)
Q Consensus 378 ~~~~~~~~--~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 449 (637)
+.+.... |+ ...|......+.+.+..++|...+.+..+.. +-....|......+...|..++|.+.|...
T Consensus 633 -Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 633 -LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred -cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 1111111 22 3456677788889999999999999888763 556677777788889999999999999999
Q ss_pred HHCCCCCCH-HHHHHHHHHHHhcCChhHHHH--HHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 006640 450 CEHGVSPNL-KTFETLMWGYSEARQPWRAEE--ILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 450 ~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
... .|+. ....++...+...|+..-|.. ++..+.+ +.|+ .+.|..++..+...|+.++|.+.|..+.+.
T Consensus 711 l~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 711 LAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred Hhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 884 4654 488999999999998887777 8888887 4454 679999999999999999999999887655
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=1.2e-09 Score=99.70 Aligned_cols=238 Identities=11% Similarity=0.068 Sum_probs=200.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006640 247 DVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIK 326 (637)
Q Consensus 247 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 326 (637)
|..--+.+..+|.+.|.+.+|.+.++..++. .|-+.||..|..+|.+-.+++.|+.++.+-.+.- +-|+.....+..
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHH
Confidence 3344467899999999999999999988776 4667888899999999999999999999988762 445555566778
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006640 327 GFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEK 406 (637)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 406 (637)
.+...++.+++.++++...+.. +.++.....+...|.-.++++.|+..+++++..|+. ++..|+.+.-.|.-.++++-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhh
Confidence 8888899999999999998865 357777788888899999999999999999999864 88999999999999999999
Q ss_pred HHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006640 407 AEELLMTMIESGFHPN--VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIM 484 (637)
Q Consensus 407 A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 484 (637)
++.-|.+.....-.|+ ...|-.+.......|++..|.+.|+-.+..+.. +...++.|.-.-.+.|++++|..+++..
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 9999999887543444 457889998899999999999999999876532 5678999988889999999999999988
Q ss_pred HHCCCCCC
Q 006640 485 KAFGVHPQ 492 (637)
Q Consensus 485 ~~~g~~p~ 492 (637)
.. +.|+
T Consensus 456 ~s--~~P~ 461 (478)
T KOG1129|consen 456 KS--VMPD 461 (478)
T ss_pred hh--hCcc
Confidence 76 5555
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2.1e-07 Score=87.98 Aligned_cols=403 Identities=12% Similarity=0.078 Sum_probs=264.3
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCHHHHHH
Q 006640 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKR--FNSIHSIMSQVEENGMDPDSIFFNA 147 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ 147 (637)
.+...--..+..|...++-+.|+....+.+..- ...--+.++.-+...|- .+.... +...+..- +. --.
T Consensus 95 ~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~---r~p~inlMla~l~~~g~r~~~~vl~-ykevvrec-p~----aL~ 165 (564)
T KOG1174|consen 95 GDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL---RSPRINLMLARLQHHGSRHKEAVLA-YKEVIREC-PM----ALQ 165 (564)
T ss_pred ccHHHHHHHHHHHHHHccchHHHHHHhcCCccc---cchhHHHHHHHHHhccccccHHHHh-hhHHHHhc-ch----HHH
Confidence 344444556777888888889988777654321 12223444443333332 222221 22221110 11 111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 006640 148 VINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI--AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCN 225 (637)
Q Consensus 148 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 225 (637)
.|.+..+.+ +..+...=..|....++|........+.++++ .++-..|...+-.+.....++.|+.....+...+..
T Consensus 166 ~i~~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~ 244 (564)
T KOG1174|consen 166 VIEALLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYY 244 (564)
T ss_pred HHHHHHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhh
Confidence 111222111 11111111122222333444444444555443 455556666665555555577889999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 006640 226 EKNITEAWNVMHKMAASGMKPDV-VTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALR 304 (637)
Q Consensus 226 ~g~~~~A~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 304 (637)
.|+.++|+..|++.... .|+. .....-.-.+.+.|+++.-..+...+.... +-....|-.-+......++++.|+.
T Consensus 245 ~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~ 321 (564)
T KOG1174|consen 245 NGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALN 321 (564)
T ss_pred hcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHH
Confidence 99999999999998764 2332 222233344567888888888877775532 1233344444555667889999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 006640 305 FARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGI 384 (637)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 384 (637)
+-.+.++.. +.+...+-.-...+.+.++.++|.-.|+...... +.+..+|..|+..|...|++.+|.-.-+...+. +
T Consensus 322 ~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~ 398 (564)
T KOG1174|consen 322 FVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-F 398 (564)
T ss_pred HHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-h
Confidence 999998764 4556666666677889999999999999988764 357899999999999999999998888776654 3
Q ss_pred CCCHHHHHHHH-HHHHH-cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006640 385 KPDAHAYSILA-KGYVR-EQEPEKAEELLMTMIESGFHPNV-VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTF 461 (637)
Q Consensus 385 ~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 461 (637)
+.+..+.+.+. ..+.- .---++|.+++++..+. .|+. ...+.+...|...|..++++.++++... ..||....
T Consensus 399 ~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH 474 (564)
T KOG1174|consen 399 QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLH 474 (564)
T ss_pred hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHH
Confidence 45666666663 33332 22347899999988875 4554 5667778889999999999999999987 45899999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 006640 462 ETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS 494 (637)
Q Consensus 462 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 494 (637)
+.|...+...+.+.+|++.|..... +.|...
T Consensus 475 ~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~ 505 (564)
T KOG1174|consen 475 NHLGDIMRAQNEPQKAMEYYYKALR--QDPKSK 505 (564)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh--cCccch
Confidence 9999999999999999999998876 667654
No 70
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.28 E-value=3.3e-09 Score=109.05 Aligned_cols=254 Identities=18% Similarity=0.203 Sum_probs=169.6
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006640 94 IFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGL 173 (637)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 173 (637)
++-.+...|+.|+-+||.++|.-|+..|+.+.|- +|..|.-...+.+...++.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4556677799999999999999999999999888 9999988888888899999999988888887776
Q ss_pred CCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHh----cCCCCCCHH-------------HHHHHHHHHHhcCCHHHHH
Q 006640 174 TPTTSTYNTLIKGYGIAGKPEE---SVKLLDLMSR----EGNVKPNLR-------------TYNVLVRAWCNEKNITEAW 233 (637)
Q Consensus 174 ~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~----~~~~~~~~~-------------~~~~li~~~~~~g~~~~A~ 233 (637)
.|...+|+.|..+|...|++.. ..+.+..+.. .|.-.|... .-..++......|-++.++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 4788899999999999998755 2222222211 110011111 1122333334455555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006640 234 NVMHKMAASGMKPDVVTYNTIATAYAQNG-EADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 234 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
+++..+....-. .+.. .+++-+.... .+++-........+ .+++.++..++..-..+|+++.|..++..|.+.
T Consensus 160 kll~~~Pvsa~~-~p~~--vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 160 KLLAKVPVSAWN-APFQ--VFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHhhCCccccc-chHH--HHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 555544322100 0111 1233332222 22222222222222 478888888888888888888888888888888
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 006640 313 GVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGF 368 (637)
Q Consensus 313 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 368 (637)
|++.+..-|..++-+ .++...+..+++-|.+.|+.|+..|+..-+..+...|.
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 888887777777654 67777788888888888888888888877776666544
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=6.7e-07 Score=88.63 Aligned_cols=416 Identities=13% Similarity=0.095 Sum_probs=224.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH--HHHHHH--h
Q 006640 79 MNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNA--VINAFS--E 154 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~~--~ 154 (637)
++.+..+|++++|.+...+++..+ +.+...+..-+-++.+.+.+++|+.+.+.-.. ..+++. +=.+|+ +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHHH
Confidence 577788999999999999999854 55778888888899999999999966553221 111222 244555 6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006640 155 SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWN 234 (637)
Q Consensus 155 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 234 (637)
.+..++|+..++-... .+..+...-...+.+.|++++|+++|..+.+.+.-.-+...-..++.+-... .+ .
T Consensus 92 lnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~-~ 162 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QV-Q 162 (652)
T ss_pred cccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hH-H
Confidence 7899999998883322 2444667777888899999999999999987652111222222222221110 11 1
Q ss_pred HHHHHHHCCCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHCC-------CCC--Ch-----hhHHHHHHHHHHcC
Q 006640 235 VMHKMAASGMKPDVVTYN---TIATAYAQNGEADQAEEVIVEMEHNG-------VQP--NG-----RTCGIIISGYCKEG 297 (637)
Q Consensus 235 ~~~~~~~~g~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~--~~-----~~~~~li~~~~~~g 297 (637)
+.+... ..| ..+|. .....+...|++.+|+++++...+.+ -.. +. ..-..|.-++-..|
T Consensus 163 ~~q~v~---~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 163 LLQSVP---EVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred HHHhcc---CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 122221 122 22332 24455677899999999988873211 000 00 11123444566789
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHHHcCCH-h-HHHH------------HH------------------
Q 006640 298 KIKEALRFARTMKEYGVHPNLVI----FNLLIKGFVEIMDR-D-GVDE------------VL------------------ 341 (637)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~----~~~ll~~~~~~~~~-~-~a~~------------~~------------------ 341 (637)
+.++|..++...++.. ++|... -|.++.. ....++ + .+.. ..
T Consensus 239 qt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL 316 (652)
T KOG2376|consen 239 QTAEASSIYVDIIKRN-PADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALL 316 (652)
T ss_pred chHHHHHHHHHHHHhc-CCCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888765 334322 1222211 100000 0 0000 00
Q ss_pred -----------HHHHhCCCCCCHHHHHHHHHHHHH--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006640 342 -----------ALMKEFRVNPDVITYSTIMNAWST--AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAE 408 (637)
Q Consensus 342 -----------~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 408 (637)
+.............+..++..+.+ ......+..++....+........+.-.++......|+++.|.
T Consensus 317 ~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~ 396 (652)
T KOG2376|consen 317 ALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVAL 396 (652)
T ss_pred HHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 000000001111222333332221 1234555555555544422222344555566666777777777
Q ss_pred HHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHH----HHHHHHhcCCh
Q 006640 409 ELLM--------TMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH--GVSPNLKTFET----LMWGYSEARQP 474 (637)
Q Consensus 409 ~~~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~----l~~~~~~~g~~ 474 (637)
+++. .+.+.+..| .+...+...+.+.++.+.|..++.+.... .-.+......+ +...=.+.|.-
T Consensus 397 ~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~ 474 (652)
T KOG2376|consen 397 EILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE 474 (652)
T ss_pred HHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch
Confidence 7777 444433333 33445555566666666666666665431 01112222222 22233345777
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006640 475 WRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 475 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
++|..+++++.+.. .+|.....+++.+|++. +.+.|+.+-..++
T Consensus 475 ~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 475 EEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 77777777776532 24566677777777665 5666666655553
No 72
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.24 E-value=1.3e-08 Score=103.09 Aligned_cols=206 Identities=21% Similarity=0.228 Sum_probs=104.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc-----C-CCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC-----CC-CCCH-H
Q 006640 289 IISGYCKEGKIKEALRFARTMKEY-----G-VHP-NLVIFNLLIKGFVEIMDRDGVDEVLALMKEF-----RV-NPDV-I 354 (637)
Q Consensus 289 li~~~~~~g~~~~A~~~~~~~~~~-----~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~ 354 (637)
+...|...+++++|..+|+++... | ..| -..+++.|..+|.+.|++++|...++...+. +. .+.+ .
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 455556666666666666655422 1 011 1234555555666666666665555443221 10 1111 1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006640 355 TYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWC 434 (637)
Q Consensus 355 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 434 (637)
.++.+...|...+++++|..+++...+. +........+--..+++.|...|.
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i----------------------------~~~~~g~~~~~~a~~~~nl~~l~~ 378 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKI----------------------------YLDAPGEDNVNLAKIYANLAELYL 378 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHH----------------------------HHhhccccchHHHHHHHHHHHHHH
Confidence 2344445555566666666555543321 000000000011234555666666
Q ss_pred hcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH----HCCC-CCCH-HHHHHHHH
Q 006640 435 SDGSMDRAIEVFDKMCEH-----G-VSPN-LKTFETLMWGYSEARQPWRAEEILQIMK----AFGV-HPQK-STFLLLAE 501 (637)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~-----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~g~-~p~~-~~~~~l~~ 501 (637)
..|++++|.++|++++.. | ..+. ...++.+...|.+.++..+|.++|.+.. ..|. .|+. .+|..|+.
T Consensus 379 ~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~ 458 (508)
T KOG1840|consen 379 KMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAA 458 (508)
T ss_pred HhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence 666666666666655421 1 1111 2345666666777777766666665542 2232 2333 36777778
Q ss_pred HHHHcCCHHHHHHHHHHHhhc
Q 006640 502 ARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 502 ~~~~~g~~~eA~~~~~~~~~~ 522 (637)
+|.+.|++++|.++.+.+...
T Consensus 459 ~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 459 LYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHcccHHHHHHHHHHHHHH
Confidence 888888888888877777643
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.23 E-value=8.1e-09 Score=104.44 Aligned_cols=231 Identities=15% Similarity=0.164 Sum_probs=140.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHhC-----CCC-C
Q 006640 285 TCGIIISGYCKEGKIKEALRFARTMKEY-----G-VHPNLV-IFNLLIKGFVEIMDRDGVDEVLALMKEF-----RVN-P 351 (637)
Q Consensus 285 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~-~ 351 (637)
+...+...|...|+++.|..+++...+. | ..|.+. ..+.+...|...+++++|..+|+.+... |.. |
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3344555555555555555555554432 1 012222 2334667788888999888888876542 111 1
Q ss_pred -CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 006640 352 -DVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNV-VIFTTI 429 (637)
Q Consensus 352 -~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l 429 (637)
-..+++.|..+|.+.|++++|...++...+ ++++.... ..|.+ ..++.+
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~----------------------------I~~~~~~~-~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALE----------------------------IYEKLLGA-SHPEVAAQLSEL 331 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHH----------------------------HHHHhhcc-ChHHHHHHHHHH
Confidence 122344444455555555555544444322 11110001 12222 234556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHH----C--CCCCC-HHH
Q 006640 430 ISGWCSDGSMDRAIEVFDKMCEH---GVSPN----LKTFETLMWGYSEARQPWRAEEILQIMKA----F--GVHPQ-KST 495 (637)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~--g~~p~-~~~ 495 (637)
+..|...+++++|..+++...+. -+.++ ..++..|...|.+.|++++|.++++++.. . +..+. ...
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 66777778888888877766531 12233 34799999999999999999999998852 1 12233 447
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcc----cc--------------ccccccccchHHHHHHHHh
Q 006640 496 FLLLAEARRATGLTKEAKRILSKIKNKE----RT--------------NEMEAEEDIPVESLERLYH 544 (637)
Q Consensus 496 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~----~~--------------~~~~~~~~~a~~~~e~l~~ 544 (637)
++.+...|.+.+++++|.++|.+..... ++ .+..++.+.|.+..++++.
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 8899999999999999999999876432 11 1357889999999988874
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.21 E-value=8.4e-08 Score=98.44 Aligned_cols=307 Identities=16% Similarity=0.108 Sum_probs=148.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHH
Q 006640 182 TLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYN-TIATAYAQ 260 (637)
Q Consensus 182 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~-~li~~~~~ 260 (637)
-....+...|++++|++.++.-... +.............+.+.|+.++|..++..+++.+ |+...|. .+..+...
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhh
Confidence 3445566778888888888765543 33345555666777778888888888888887764 4444443 33333322
Q ss_pred c-----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 006640 261 N-----GEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKI-KEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDR 334 (637)
Q Consensus 261 ~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 334 (637)
. .+.+....+|+++...- |.......+.-.+.....+ ..+..++..+...|+|+ +++.+-..|......
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKA 159 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHH
Confidence 1 24556666666665542 3322222222222221122 23344455555555433 222222223322222
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHH
Q 006640 335 DGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAH--AYSILAKGYVREQEPEKAEELLM 412 (637)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~ 412 (637)
.-...++......- ...+.+.... ....-+|... ++.-+...|-..|++++|+++++
T Consensus 160 ~~i~~l~~~~~~~l---------------~~~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id 218 (517)
T PF12569_consen 160 AIIESLVEEYVNSL---------------ESNGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYID 218 (517)
T ss_pred HHHHHHHHHHHHhh---------------cccCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 22222222221110 0000000000 0000122222 22334455556666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 006640 413 TMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ 492 (637)
Q Consensus 413 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 492 (637)
+.++.. |-.+..|..-...+-+.|++.+|.+.++.....+.. |...-+-.+..+.++|++++|.+.+....+.+..|.
T Consensus 219 ~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~ 296 (517)
T PF12569_consen 219 KAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPL 296 (517)
T ss_pred HHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcc
Confidence 666552 222445555566666666666666666666654432 444444455555666666666666655544333332
Q ss_pred HH------H--HHHHHHHHHHcCCHHHHHHHHHHHh
Q 006640 493 KS------T--FLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 493 ~~------~--~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
.. . ....+.+|.|.|++..|.+.+..+.
T Consensus 297 ~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 297 SNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11 1 1233456666666666666666554
No 75
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.20 E-value=8.3e-07 Score=90.75 Aligned_cols=401 Identities=14% Similarity=0.106 Sum_probs=234.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHH
Q 006640 137 GMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTY 216 (637)
Q Consensus 137 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 216 (637)
.+..|..+|..|.-+...+|+++.+-+.|++....-+. ....|+.+...|...|.-..|+.+++.-.....-+++...+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 45567888888888888888888888888887654332 56678888888888888888888887765543223334444
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHCCCC
Q 006640 217 NVLVRAWC-NEKNITEAWNVMHKMAAS--GM--KPDVVTYNTIATAYAQN-----------GEADQAEEVIVEMEHNGVQ 280 (637)
Q Consensus 217 ~~li~~~~-~~g~~~~A~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~ 280 (637)
...-..|. +.+..++++.+-.+.... +. ...+..|..+.-+|... ....++++.+++..+.+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~- 475 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP- 475 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-
Confidence 43334443 456777777777666651 11 11234444444444332 123466667777766543
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006640 281 PNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIM 360 (637)
Q Consensus 281 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 360 (637)
.|..+.-.+.--|+..++++.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+...+.-. .|......-+
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~-~N~~l~~~~~ 554 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG-DNHVLMDGKI 554 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh-hhhhhchhhh
Confidence 233333444556777888888888888888875567788888888888888888888888877654321 1111111111
Q ss_pred HHHHHcCChHHHHHHHHHHHHC---------------------CC-------CCCHHHHHHHHHHHH-H--cCCHHHHHH
Q 006640 361 NAWSTAGFMDKCKEIFDDMGKA---------------------GI-------KPDAHAYSILAKGYV-R--EQEPEKAEE 409 (637)
Q Consensus 361 ~~~~~~g~~~~a~~~~~~~~~~---------------------~~-------~~~~~~~~~l~~~~~-~--~g~~~~A~~ 409 (637)
..-...++.+++......+... |. .....++..+..... + .-..+..
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~-- 632 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK-- 632 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc--
Confidence 1112234444444333332210 00 000111111111111 0 0000000
Q ss_pred HHHHHHHCCCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 006640 410 LLMTMIESGFH--PN------VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEIL 481 (637)
Q Consensus 410 ~~~~~~~~~~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 481 (637)
+...... |+ ...|......+...++.++|...+.++.... +-....|.-....+...|...+|.+.|
T Consensus 633 ----Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 633 ----LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred ----cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 1111111 22 2245556667778888888888888876642 224445666666777888889999888
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHH--HHHHHhhccccc-----------cccccccchHHHHHHHHhhhc
Q 006640 482 QIMKAFGVHPQKS-TFLLLAEARRATGLTKEAKR--ILSKIKNKERTN-----------EMEAEEDIPVESLERLYHKEA 547 (637)
Q Consensus 482 ~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~--~~~~~~~~~~~~-----------~~~~~~~~a~~~~e~l~~~~~ 547 (637)
..... +.|+.. ....++.++.+.|+..-|.. ++..+....|.+ ...|+.+.|...+.-++++++
T Consensus 708 ~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 708 LVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 87766 667744 77788888888887666666 777776665543 124555555555555555555
Q ss_pred cC
Q 006640 548 TT 549 (637)
Q Consensus 548 ~~ 549 (637)
.+
T Consensus 786 S~ 787 (799)
T KOG4162|consen 786 SN 787 (799)
T ss_pred CC
Confidence 44
No 76
>PF13041 PPR_2: PPR repeat family
Probab=99.19 E-value=6e-11 Score=80.38 Aligned_cols=49 Identities=35% Similarity=0.813 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006640 421 PNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYS 469 (637)
Q Consensus 421 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 469 (637)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666777777777777777777777777776677777777777776665
No 77
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.18 E-value=1.2e-07 Score=97.22 Aligned_cols=130 Identities=14% Similarity=0.161 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006640 285 TCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWS 364 (637)
Q Consensus 285 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 364 (637)
++..+...|...|++++|++++++.+++. +-.+..|..-...+-+.|++.+|.+.++....... .|-.+-+-.+..+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHH
Confidence 33555666777788888888888777763 22355677777777788888888888877777653 36666666677777
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHH------HH--HHHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 365 TAGFMDKCKEIFDDMGKAGIKPDAH------AY--SILAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 365 ~~g~~~~a~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
+.|++++|.+++....+.+..|... .| .....+|.+.|++..|++-|..+.+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8888888888877776654332211 11 3445677788888888777766654
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.17 E-value=3e-08 Score=96.36 Aligned_cols=218 Identities=11% Similarity=0.001 Sum_probs=140.5
Q ss_pred CChhHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006640 86 GKPQEAQAIFNNLIEGGH-KP--SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAM 162 (637)
Q Consensus 86 g~~~~A~~~~~~~~~~~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 162 (637)
+..+.++.-+.+++.... .| ....|..+...+...|+++.|...|.+.++.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 455667777777775321 11 23457777777888888888888888888765 566788888888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006640 163 DTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAAS 242 (637)
Q Consensus 163 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 242 (637)
..|++..+..+. +..+|..+..++...|++++|++.|+...+.. |+..........+...++.++|...|.+....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~---P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD---PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 888888876543 56677778888888888888888888887754 33222222222334567788888888665433
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 006640 243 GMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHN---GV---QPNGRTCGIIISGYCKEGKIKEALRFARTMKEYG 313 (637)
Q Consensus 243 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 313 (637)
. .++...+ .+ .....|+...+ +.+..+.+. .+ +.....|..+...+.+.|++++|+..|++..+..
T Consensus 195 ~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 L-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred C-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2 2222221 22 22334555443 244443321 11 0123467777888888888888888888887664
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.16 E-value=5.3e-08 Score=85.16 Aligned_cols=184 Identities=11% Similarity=0.034 Sum_probs=70.3
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 006640 116 ALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEE 195 (637)
Q Consensus 116 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 195 (637)
.|...|++..|...+++.++.. +.+..+|..+...|.+.|+.+.|.+.|++.....+. +..+.|.....+|..|++++
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~~~e 121 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCChHH
Confidence 3334444444444444444332 222333444444444444444444444444333222 23333444444444444444
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006640 196 SVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEME 275 (637)
Q Consensus 196 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 275 (637)
|...|++.........-..+|..+.-+..+.|+++.|...|++.++.. +-...+...+.....+.|++-.|...++...
T Consensus 122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 444444443322222223334444444444444444444444443332 1112233333344444444444444444433
Q ss_pred HCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 006640 276 HNGVQPNGRTCGIIISGYCKEGKIKEAL 303 (637)
Q Consensus 276 ~~~~~~~~~~~~~li~~~~~~g~~~~A~ 303 (637)
..+. ++..+.-..|..--..|+.+.+-
T Consensus 201 ~~~~-~~A~sL~L~iriak~~gd~~~a~ 227 (250)
T COG3063 201 QRGG-AQAESLLLGIRIAKRLGDRAAAQ 227 (250)
T ss_pred hccc-ccHHHHHHHHHHHHHhccHHHHH
Confidence 3332 33333333333333334433333
No 80
>PF13041 PPR_2: PPR repeat family
Probab=99.14 E-value=1.3e-10 Score=78.73 Aligned_cols=49 Identities=33% Similarity=0.695 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006640 211 PNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYA 259 (637)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 259 (637)
||..+||+++++|++.|++++|+++|++|.+.|+.||..||+.|+++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555543
No 81
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=1.5e-07 Score=85.04 Aligned_cols=291 Identities=12% Similarity=0.074 Sum_probs=189.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHHH
Q 006640 75 MTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNA-VINAFS 153 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~ 153 (637)
+++.+..+.+..++.+|++++..-.++. +.+....+.+..+|....++..|-..|+++-.. .|...-|.. -...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4556778889999999999998887763 237777888889999999999999999998764 344433322 234555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006640 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLI--KGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITE 231 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 231 (637)
+.+.+.+|+++...|... |+...-..-+ ....+.+++..+..++++....+ +..+.+...-...+.|++++
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en----~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN----EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC----ccchhccchheeeccccHHH
Confidence 778899999999888653 2222111112 22345788999999999887543 55666666666779999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-------------Chh--------------
Q 006640 232 AWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQP-------------NGR-------------- 284 (637)
Q Consensus 232 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~~-------------- 284 (637)
|.+-|+...+.+---....|+ +.-+..+.|+++.|++...++++.|++. |+.
T Consensus 163 AvqkFqaAlqvsGyqpllAYn-iALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYN-LALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHH-HHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 999999998765333456676 4456677899999999999998876532 111
Q ss_pred -hHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006640 285 -TCGIIISGYCKEGKIKEALRFARTMKE-YGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNA 362 (637)
Q Consensus 285 -~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 362 (637)
.+|.-...+.+.|+++.|.+.+-+|.- .....|++|...+.-.-. .+++.+..+-+..+...++ -...||..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CChHHHHHHHHH
Confidence 011122234556667777666666631 112345555555432221 2334444444444554443 345666666667
Q ss_pred HHHcCChHHHHHHHHH
Q 006640 363 WSTAGFMDKCKEIFDD 378 (637)
Q Consensus 363 ~~~~g~~~~a~~~~~~ 378 (637)
|++..-++.|-+++.+
T Consensus 320 yCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAE 335 (459)
T ss_pred HhhhHHHhHHHHHHhh
Confidence 7777666666666544
No 82
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=4.1e-07 Score=89.26 Aligned_cols=403 Identities=14% Similarity=0.113 Sum_probs=230.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 006640 79 MNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPD-SIFFNAVINAFSESGN 157 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~ 157 (637)
-++....|+++.|+.+|-+.+... ++|.+.|+.-..+|+..|++++|+.=-.+..+. .|+ ..-|+....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 456778999999999999998865 458899999999999999999998876666664 455 4679999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH---HHHHHHHHhcC--CCCCCHHHHHHHHHHHHhc------
Q 006640 158 MEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEES---VKLLDLMSREG--NVKPNLRTYNVLVRAWCNE------ 226 (637)
Q Consensus 158 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A---~~~~~~m~~~~--~~~~~~~~~~~li~~~~~~------ 226 (637)
+++|+..|.+-.+..+. +...++-+..++.......+. -.++..+.... .......+|..++..+-+.
T Consensus 86 ~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 99999999999887543 566777777777211000000 00111110000 0000011222222222110
Q ss_pred ----CCHHHHHHHHHHH-----HHCC-------CCC------------C----------HHHHHHHHHHHHHcCCHHHHH
Q 006640 227 ----KNITEAWNVMHKM-----AASG-------MKP------------D----------VVTYNTIATAYAQNGEADQAE 268 (637)
Q Consensus 227 ----g~~~~A~~~~~~~-----~~~g-------~~~------------~----------~~~~~~li~~~~~~g~~~~A~ 268 (637)
.++..|...+... ...| ..| | ..-...+.+...+..+++.|.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 0111111111000 0000 011 0 011234555555666666666
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHHHcCCHhHHHHHH
Q 006640 269 EVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNL-------LIKGFVEIMDRDGVDEVL 341 (637)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------ll~~~~~~~~~~~a~~~~ 341 (637)
+-+....... .+..-++....+|...|.+.+....-.+..+.| .....-++. +..+|.+.++++.++..|
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g-re~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVG-RELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh-HHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 6666665543 344445555566666666666555555544443 111111221 223444555566666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 006640 342 ALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA-HAYSILAKGYVREQEPEKAEELLMTMIESGFH 420 (637)
Q Consensus 342 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 420 (637)
.........|+.. .+....+++........-.+ |.. .-...-..-+.+.|++..|...|.++++.. |
T Consensus 322 ~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P 389 (539)
T KOG0548|consen 322 QKALTEHRTPDLL---------SKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-P 389 (539)
T ss_pred HHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-C
Confidence 6554433232211 22233334443333332221 221 111222555678889999999999988875 7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 006640 421 PNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNL-KTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLL 499 (637)
Q Consensus 421 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 499 (637)
.|...|..-..+|.+.|.+..|+.-.+..++. .|+. ..|..=..++....++++|.+.|++..+ ..|+..-+..-
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale--~dp~~~e~~~~ 465 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE--LDPSNAEAIDG 465 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchhHHHHHH
Confidence 78888888888899999999988888888775 3443 3566556667777788888888888776 44665444433
Q ss_pred HHHHH
Q 006640 500 AEARR 504 (637)
Q Consensus 500 ~~~~~ 504 (637)
+.-|.
T Consensus 466 ~~rc~ 470 (539)
T KOG0548|consen 466 YRRCV 470 (539)
T ss_pred HHHHH
Confidence 33333
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.11 E-value=8.5e-08 Score=93.16 Aligned_cols=94 Identities=12% Similarity=-0.128 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 006640 286 CGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWST 365 (637)
Q Consensus 286 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 365 (637)
|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|++++|...|+...+..+ .+..++..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 3444444444455555554444444432 23344444444444444555555444444444321 123344444444444
Q ss_pred cCChHHHHHHHHHHHH
Q 006640 366 AGFMDKCKEIFDDMGK 381 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~ 381 (637)
.|++++|.+.|+...+
T Consensus 145 ~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 145 GGRYELAQDDLLAFYQ 160 (296)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555555555554444
No 84
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.3e-06 Score=85.98 Aligned_cols=380 Identities=15% Similarity=0.082 Sum_probs=245.0
Q ss_pred cCcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 006640 68 SCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPS-LVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
+++|.+.|+.-..+|+..|++++|++=-.+-++ ..|+ +..|+....++.-.|++++|+..|.+-++.. +.+...++
T Consensus 32 ~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~ 108 (539)
T KOG0548|consen 32 SPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKT 108 (539)
T ss_pred CCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHH
Confidence 456899999999999999999999987776665 3554 5689999999999999999999999998875 66778888
Q ss_pred HHHHHHHhcCCHHHHHHHH------HHHHHC---CCCCCHHHHHHHHHHHH----------hcCChHHHHHHHHHH----
Q 006640 147 AVINAFSESGNMEEAMDTF------WKMKES---GLTPTTSTYNTLIKGYG----------IAGKPEESVKLLDLM---- 203 (637)
Q Consensus 147 ~li~~~~~~g~~~~A~~~~------~~m~~~---~~~~~~~~~~~li~~~~----------~~g~~~~A~~~~~~m---- 203 (637)
-|..++.... .+.+.| ..+... ........|..++..+- ...++..|.-.+...
T Consensus 109 gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~ 185 (539)
T KOG0548|consen 109 GLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELL 185 (539)
T ss_pred hHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCcccc
Confidence 8888872211 111111 111100 00001112333332221 111112222111110
Q ss_pred -HhcC------CCCC------------C----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006640 204 -SREG------NVKP------------N----------LRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTI 254 (637)
Q Consensus 204 -~~~~------~~~~------------~----------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 254 (637)
...+ ...| | ..-.-.+.++..+..++..|++-+....... -+..-++..
T Consensus 186 ~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~ 263 (539)
T KOG0548|consen 186 FYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNI 263 (539)
T ss_pred ccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHH
Confidence 0000 0011 0 0123557777788889999999999888764 455666777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCChh-------hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006640 255 ATAYAQNGEADQAEEVIVEMEHNGVQPNGR-------TCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKG 327 (637)
Q Consensus 255 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 327 (637)
..+|...|.+......-+...+.|.. ... .+..+..+|.+.++++.|+..|.+.......|+..
T Consensus 264 aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l-------- 334 (539)
T KOG0548|consen 264 AAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL-------- 334 (539)
T ss_pred HHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH--------
Confidence 78888888888777776665555431 111 22234457777888999999999876543333321
Q ss_pred HHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006640 328 FVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKA 407 (637)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 407 (637)
.+....+++........-.++.. ..-...-...+.+.|++..|+..|.++++.. +.|...|.....+|.+.|.+..|
T Consensus 335 -s~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~a 411 (539)
T KOG0548|consen 335 -SKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEA 411 (539)
T ss_pred -HHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHH
Confidence 12222344444444333322221 1112223566789999999999999999986 56899999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006640 408 EELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE 470 (637)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 470 (637)
++-.+..++.+ ++....|..=..++....++++|++.|++..+.. |+..-+..-+.-|..
T Consensus 412 L~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 412 LKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHH
Confidence 99988888874 5556667666777777889999999999999854 665555544555555
No 85
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=4.9e-07 Score=83.78 Aligned_cols=413 Identities=10% Similarity=0.033 Sum_probs=268.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006640 79 MNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNM 158 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 158 (637)
+.-+..+.++..|+.+++.-...+-.-...+-.-+..++...|++++|...|..+.... .++...+..|.-.+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 67778889999999999877643322221222334567788999999999999887765 67778888888777778999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006640 159 EEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHK 238 (637)
Q Consensus 159 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 238 (637)
.+|..+-....+ ++-....|.+.-.+.|+-++-..+-..+.. +...-.+|.+.....-.+.+|++++.+
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD------~~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD------TLEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh------hHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 999888776643 455556666777778887777666665543 335556677776677789999999999
Q ss_pred HHHCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 006640 239 MAASGMKPDVVTYNT-IATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPN 317 (637)
Q Consensus 239 ~~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 317 (637)
.+.. .|+-...|. +.-+|.+..-++-+.++++--.+. ++.+....|..+....+.=.-..|.+-...+.+.+...
T Consensus 177 vL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~- 252 (557)
T KOG3785|consen 177 VLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE- 252 (557)
T ss_pred HHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-
Confidence 9875 344444443 455678888889898888877665 22334555555444444322233444444444433111
Q ss_pred HHHHHHHHHHHHHc-----CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 006640 318 LVIFNLLIKGFVEI-----MDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYS 392 (637)
Q Consensus 318 ~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 392 (637)
...+.-+++. ..-+.|.+++--+.+.- | ..-..|+-.|.+.+++++|..+.+++.-. .|-.....
T Consensus 253 ----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~I--P--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilK 322 (557)
T KOG3785|consen 253 ----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHI--P--EARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILK 322 (557)
T ss_pred ----chhHHHHHHcCeEEEeCCccHHHhchHHHhhC--h--HhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHH
Confidence 1122223332 23467777776665532 2 23345666788999999999988776432 23333333
Q ss_pred HHHHHH-----HHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006640 393 ILAKGY-----VREQEPEKAEELLMTMIESGFHPNV-VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMW 466 (637)
Q Consensus 393 ~l~~~~-----~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 466 (637)
.++.+- .....+.-|...|+..-+++..-|. .--.++.+.+.-..++++.+.++......-.. |...-..+..
T Consensus 323 gvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQ 401 (557)
T KOG3785|consen 323 GVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQ 401 (557)
T ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHH
Confidence 332221 1122345577777666555444333 23456777777777899999998888765333 4444446888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHH
Q 006640 467 GYSEARQPWRAEEILQIMKAFGVHPQKSTFL-LLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 467 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
+.+..|.+.+|.++|-.+....++ +..+|. .+.+.|.+.++.+-|..++-++
T Consensus 402 Ak~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 402 AKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 999999999999999776543344 344555 5668899999999999988765
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.09 E-value=1.3e-07 Score=82.80 Aligned_cols=201 Identities=13% Similarity=0.035 Sum_probs=156.8
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006640 320 IFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYV 399 (637)
Q Consensus 320 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 399 (637)
+...+.-.|.+.|+...|..-++..++.. +.+..++..+...|.+.|..+.|.+.|++..+.. +.+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 34455667888888888888888888875 3466788888888889999999999999888764 346778888888888
Q ss_pred HcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006640 400 REQEPEKAEELLMTMIESGF-HPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAE 478 (637)
Q Consensus 400 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 478 (637)
..|++++|...|++...... .--..+|..++.+..+.|+.+.|...|++.++.... ...+...+.......|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 99999999999998886422 223467888888888999999999999998886432 4557777888888889999998
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc
Q 006640 479 EILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 479 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
.+++.....+. ++.+.....+.+-.+.|+.+.|-++=..+....|
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 88887765444 7888888888888888888888887766655554
No 87
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.06 E-value=2.5e-07 Score=96.73 Aligned_cols=476 Identities=10% Similarity=-0.034 Sum_probs=278.7
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006640 87 KPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFW 166 (637)
Q Consensus 87 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 166 (637)
+...|+..|-+.++..+ -=...|..|...|...-+...|...|+++.+.+ +.|...+......|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 36667776666655321 134578888888877778888888888888766 6677788888888888888888888744
Q ss_pred HHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006640 167 KMKESGLT-PTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMK 245 (637)
Q Consensus 167 ~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 245 (637)
...+..+. .-...|.-..-.|...++...|+.-|+...+.. |.|...|..++.+|...|++..|+++|.+.... .
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d--PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD--PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC--chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 43333211 112334445556777888888888888887764 567788888888888888888888888877664 3
Q ss_pred CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC------CCCChhhHHHHHHHHHHcCCHHH-------HHHHHHHHHH
Q 006640 246 PDV-VTYNTIATAYAQNGEADQAEEVIVEMEHNG------VQPNGRTCGIIISGYCKEGKIKE-------ALRFARTMKE 311 (637)
Q Consensus 246 ~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~-------A~~~~~~~~~ 311 (637)
|+. ..-.-....-+..|.+.+|+..+..+.... ...-..++..+...+.-.|-..+ +++.|.-...
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 332 222223344566788888888777664321 11112233333333333333333 3333333332
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHh--H----HHH-HHHHHHhCCCC--------------------CCHHHHHHHHHHHH
Q 006640 312 YGVHPNLVIFNLLIKGFVEIMDRD--G----VDE-VLALMKEFRVN--------------------PDVITYSTIMNAWS 364 (637)
Q Consensus 312 ~~~~~~~~~~~~ll~~~~~~~~~~--~----a~~-~~~~~~~~~~~--------------------~~~~~~~~li~~~~ 364 (637)
+....+...|-.+-++|.-.-..+ - ... ++.+....+.- .+..+|..++..|.
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence 222233333433333322110000 0 000 11111111111 11223333333322
Q ss_pred H----c----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006640 365 T----A----GFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSD 436 (637)
Q Consensus 365 ~----~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 436 (637)
+ . .+...|+..+...++.. ..+...|+.|.-. ...|++.-|...|-+-.... +....+|..+...+...
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n 863 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLEN 863 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEec
Confidence 2 1 12235666666665542 3466677776654 55678888888887766553 66778898888889999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006640 437 GSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK----AFGVHPQKSTFLLLAEARRATGLTKEA 512 (637)
Q Consensus 437 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~~~~~l~~~~~~~g~~~eA 512 (637)
.+++.|...|.......+ .|...|..........|+.-++..+|..-. ..|--|+...|.|....-...|+.++-
T Consensus 864 ~d~E~A~~af~~~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~ 942 (1238)
T KOG1127|consen 864 QDFEHAEPAFSSVQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEES 942 (1238)
T ss_pred ccHHHhhHHHHhhhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHH
Confidence 999999999998887543 256677777766777888888888876521 345556666777777777778887776
Q ss_pred HHHHHHHhh----------ccccc-----------cccccccchHHHHHHHH---hhhccCCCCC-CcccccccccccCC
Q 006640 513 KRILSKIKN----------KERTN-----------EMEAEEDIPVESLERLY---HKEATTASYP-NLLQIPNVVSSDQK 567 (637)
Q Consensus 513 ~~~~~~~~~----------~~~~~-----------~~~~~~~~a~~~~e~l~---~~~~~~~~y~-~~~~L~~~y~~~g~ 567 (637)
+...+++.. +.|+. +.......+...+.+++ +..-+-..|. +--..+.+|.+.|.
T Consensus 943 I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslge 1022 (1238)
T KOG1127|consen 943 INTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGE 1022 (1238)
T ss_pred HHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcc
Confidence 666665531 11210 11223334444555554 3334444453 34456668888888
Q ss_pred Cchhh
Q 006640 568 GSAAA 572 (637)
Q Consensus 568 ~~~a~ 572 (637)
++.|.
T Consensus 1023 fe~A~ 1027 (1238)
T KOG1127|consen 1023 FESAK 1027 (1238)
T ss_pred hhhHh
Confidence 88554
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.06 E-value=1.9e-06 Score=86.98 Aligned_cols=23 Identities=13% Similarity=0.185 Sum_probs=12.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 006640 394 LAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
.+.++...|+.+.|..++..+..
T Consensus 270 ~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 270 AALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHH
Confidence 44445556666666666655543
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.04 E-value=1.6e-06 Score=87.50 Aligned_cols=199 Identities=10% Similarity=-0.018 Sum_probs=108.4
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006640 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGH-KPSLVT-YTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVI 149 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 149 (637)
+..|..+...+...|+++.+...+........ .++... .......+...|++++|...+++..+.. |.|...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 44555566666667777777666666554321 112211 1112233456677777777777776653 444444432 1
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 006640 150 NAFSE----SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCN 225 (637)
Q Consensus 150 ~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 225 (637)
..+.. .+....+.+.++..... .+........+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHH
Confidence 12222 33444444444431111 11122334445556667777777777777776653 4455666667777777
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006640 226 EKNITEAWNVMHKMAASGM-KPDV--VTYNTIATAYAQNGEADQAEEVIVEME 275 (637)
Q Consensus 226 ~g~~~~A~~~~~~~~~~g~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~ 275 (637)
.|++++|...+++...... .++. ..|..+...+...|++++|..++++..
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 7777777777776665421 1221 234456666677777777777776664
No 90
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=1.3e-06 Score=91.37 Aligned_cols=487 Identities=11% Similarity=0.068 Sum_probs=255.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHH-----HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006640 75 MTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTL-----LAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVI 149 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 149 (637)
|..+.+.+.+.|-...|++.|..+.. ++..++ .+.+ +..+...-.++.+.+.++.|+..++..+..+...+.
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~D--IKR~vV-hth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQva 685 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYD--IKRVVV-HTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVA 685 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHH--HHHHHH-HhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 66677888889999999988776643 121111 1111 122333345667777777777766666666666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC-----------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----------hc-
Q 006640 150 NAFSESGNMEEAMDTFWKMKES-----------GLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMS-----------RE- 206 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~~-----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----------~~- 206 (637)
.-|...-..+...++|+..... ++.-|+.+.-..|.+-++.|++.+..++-++-. +.
T Consensus 686 tky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeA 765 (1666)
T KOG0985|consen 686 TKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEA 765 (1666)
T ss_pred HHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhc
Confidence 5565555555555555554332 233455555566666677776666655543210 00
Q ss_pred ---C-----------CCCCCHHHH----------------------------------------------------HHHH
Q 006640 207 ---G-----------NVKPNLRTY----------------------------------------------------NVLV 220 (637)
Q Consensus 207 ---~-----------~~~~~~~~~----------------------------------------------------~~li 220 (637)
+ ++.+|.+.| .-|.
T Consensus 766 kL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv 845 (1666)
T KOG0985|consen 766 KLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELV 845 (1666)
T ss_pred cccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHH
Confidence 0 011111111 1111
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHH---HHHH------HHHC-----------C-
Q 006640 221 RAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGE-ADQAEE---VIVE------MEHN-----------G- 278 (637)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~---~~~~------~~~~-----------~- 278 (637)
.-.-+.+++.--...++.....|. -|..++|+|...|..+++ ++.-++ .|+. ..++ |
T Consensus 846 ~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGq 924 (1666)
T KOG0985|consen 846 EEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQ 924 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccC
Confidence 112233444444555666666664 378888888888776543 221111 1111 0111 1
Q ss_pred -------CCCChhhHHHHHHHHHHcCCHHHH-----------HHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHhHHH
Q 006640 279 -------VQPNGRTCGIIISGYCKEGKIKEA-----------LRFARTMKEYGV--HPNLVIFNLLIKGFVEIMDRDGVD 338 (637)
Q Consensus 279 -------~~~~~~~~~~li~~~~~~g~~~~A-----------~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~ 338 (637)
+......|-...+.+.+..+.+-- .++.++....++ ..|+...+..+.++...+-..+.+
T Consensus 925 cD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLI 1004 (1666)
T KOG0985|consen 925 CDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELI 1004 (1666)
T ss_pred CcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHH
Confidence 000112233334444444443322 235556655443 235666677778888888888888
Q ss_pred HHHHHHHhCCC--CCCHHHHHHHHH---------------------------HHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 006640 339 EVLALMKEFRV--NPDVITYSTIMN---------------------------AWSTAGFMDKCKEIFDDMGKAGIKPDAH 389 (637)
Q Consensus 339 ~~~~~~~~~~~--~~~~~~~~~li~---------------------------~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 389 (637)
++++.+.-.+. .-+...-+.|+- .+...+-+++|..+|+... .+..
T Consensus 1005 ELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~-----~n~~ 1079 (1666)
T KOG0985|consen 1005 ELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFD-----MNVS 1079 (1666)
T ss_pred HHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhc-----ccHH
Confidence 88887643211 111112222221 1222333445555554431 2333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006640 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYS 469 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 469 (637)
..+.|+. .-+.++.|.+.-++. ..+..|..+..+-.+.|.+.+|++-|-+. .|+..|..++..+.
T Consensus 1080 A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~ 1144 (1666)
T KOG0985|consen 1080 AIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVAS 1144 (1666)
T ss_pred HHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHH
Confidence 3333332 234455554444443 34678999999999999999988877543 37778899999999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccccccccccchHHHHHHHHhhhccC
Q 006640 470 EARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERTNEMEAEEDIPVESLERLYHKEATT 549 (637)
Q Consensus 470 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~a~~~~e~l~~~~~~~ 549 (637)
+.|.+++-.+++...++..-+|..+ +.++-+|.+.+++.|-++++.---..........-.+.+..-+-|++ -++
T Consensus 1145 ~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~---y~~ 1219 (1666)
T KOG0985|consen 1145 RTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLL---YSN 1219 (1666)
T ss_pred hcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHH---HHH
Confidence 9999999988888777666666554 35777888999988888876321000000000011122221122221 111
Q ss_pred CCCCCcccccccccccCCCchhhhhhhhccccccCcccchhhh
Q 006640 550 ASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDADSSLECSWF 592 (637)
Q Consensus 550 ~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~~~~k~~g~swi 592 (637)
.+ ++..|+..+-..|.+..|...-+.......-|+.+.+.|
T Consensus 1220 vS--N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1220 VS--NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACV 1260 (1666)
T ss_pred hh--hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHh
Confidence 11 345577777778888877654444333334344443333
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.00 E-value=1.7e-05 Score=73.53 Aligned_cols=312 Identities=12% Similarity=0.079 Sum_probs=155.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHH-HHHHH
Q 006640 141 DSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLR-TYNVL 219 (637)
Q Consensus 141 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~~l 219 (637)
++.-..-+...+...|++.+|+.-|...++.++. +-.++-.-...|...|+..-|+.-+.+..+. +||-. .-..-
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel---KpDF~~ARiQR 112 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL---KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc---CccHHHHHHHh
Confidence 3444455566667777777777777777764211 1122333345677777777777777777763 46632 22233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----------------HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh
Q 006640 220 VRAWCNEKNITEAWNVMHKMAASGMKPDVVT----------------YNTIATAYAQNGEADQAEEVIVEMEHNGVQPNG 283 (637)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~----------------~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 283 (637)
...+.+.|.+++|..-|+.+++.. |+..+ ....+..+...|+...|+.....+++..+ .|.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda 189 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDA 189 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chh
Confidence 445667777888877777777653 22111 11223334445566666666665555432 445
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006640 284 RTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAW 363 (637)
Q Consensus 284 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 363 (637)
..+..-..+|...|.+..|+.=++...+.. ..+...+.-+-..+...|+.+.++...++-.+.+ ||...+-.. |
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~---Y 263 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPF---Y 263 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHH---H
Confidence 555555566666666666655555544332 2334444444444555555555555555544432 332211110 0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHH
Q 006640 364 STAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVV---IFTTIISGWCSDGSMD 440 (637)
Q Consensus 364 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~ 440 (637)
-+ +.+..+.+.. +......++|.++++-.+...+.......+ .+..+-.++...|++.
T Consensus 264 Kk---lkKv~K~les----------------~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~ 324 (504)
T KOG0624|consen 264 KK---LKKVVKSLES----------------AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFG 324 (504)
T ss_pred HH---HHHHHHHHHH----------------HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHH
Confidence 00 0000000000 111233455555555555555432111111 2233444455556666
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 441 RAIEVFDKMCEHGVSPN-LKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 441 ~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
+|++...+.++. .|| ..++.--..+|.-...+++|+.-|+...+
T Consensus 325 eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 325 EAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 666666666552 233 44555555566555566666666665554
No 92
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=1.2e-05 Score=79.92 Aligned_cols=219 Identities=11% Similarity=0.032 Sum_probs=136.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 006640 114 LAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKP 193 (637)
Q Consensus 114 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 193 (637)
++-+...+++++|.....+++..+ +.|...+..=+-+..+.+.+++|+.+.+.-... ..+.+-+---..+..+.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 455667889999999999999876 666777777777888999999999665543321 11111111123334478999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006640 194 EESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKP-DVVTYNTIATAYAQNGEADQAEEVIV 272 (637)
Q Consensus 194 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 272 (637)
++|+..++-.. +.+..+...-...+.+.|++++|+.+|+.+.+.+.+- +...-..++.. +....+. +.+
T Consensus 96 Dealk~~~~~~-----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~a~l~~~-~~q 165 (652)
T KOG2376|consen 96 DEALKTLKGLD-----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----AAALQVQ-LLQ 165 (652)
T ss_pred HHHHHHHhccc-----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----HHhhhHH-HHH
Confidence 99999998332 2355577777788899999999999999998765321 11111122211 1111111 122
Q ss_pred HHHHCCCCCChhhHHH---HHHHHHHcCCHHHHHHHHHHHHHcC-------CCC------CH-HHHHHHHHHHHHcCCHh
Q 006640 273 EMEHNGVQPNGRTCGI---IISGYCKEGKIKEALRFARTMKEYG-------VHP------NL-VIFNLLIKGFVEIMDRD 335 (637)
Q Consensus 273 ~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~~~~~~-------~~~------~~-~~~~~ll~~~~~~~~~~ 335 (637)
. ....| ..+|.. ....+...|++.+|++++....+.+ -.- .. ..-..+.-.+...|+..
T Consensus 166 ~---v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 166 S---VPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred h---ccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 2 11122 223333 3456677999999999999883221 011 11 12233445567889999
Q ss_pred HHHHHHHHHHhCCC
Q 006640 336 GVDEVLALMKEFRV 349 (637)
Q Consensus 336 ~a~~~~~~~~~~~~ 349 (637)
+|..++...++...
T Consensus 242 ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 242 EASSIYVDIIKRNP 255 (652)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999888763
No 93
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.98 E-value=4.9e-05 Score=75.00 Aligned_cols=136 Identities=11% Similarity=0.142 Sum_probs=94.8
Q ss_pred ccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 006640 67 ESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
..+.|+.+|+.|++-+..+ ..++++..++++... .+-.+..|..-|..-.+.++++....+|.+.+.. ..+...|.
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~ 90 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWK 90 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHH
Confidence 3567899999999988777 999999999999863 3346778888999999999999999999998875 44577777
Q ss_pred HHHHHHHhc-CCHHH----HHHHHHHHH-HCCCCCC-HHHHHHHHHH---------HHhcCChHHHHHHHHHHHhc
Q 006640 147 AVINAFSES-GNMEE----AMDTFWKMK-ESGLTPT-TSTYNTLIKG---------YGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 147 ~li~~~~~~-g~~~~----A~~~~~~m~-~~~~~~~-~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~ 206 (637)
.-+.---+. |.... ..+.|+-.. +.|..+- -..|+..+.. |..+.+++..++++.++...
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 766543332 33222 233444333 3443332 2346665554 34455778888888888753
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.95 E-value=1.1e-05 Score=74.79 Aligned_cols=318 Identities=12% Similarity=0.085 Sum_probs=213.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 006640 177 TSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTY-NTIA 255 (637)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~-~~li 255 (637)
+.-..-+.+.+...|++..|+.-|....+.+ |.+-.++.--...|...|+...|+.-+.+.++. +||-..- ..-.
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 3334456667778889999999998887643 333344555566788888888888888888775 5664322 1233
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh
Q 006640 256 TAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRD 335 (637)
Q Consensus 256 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 335 (637)
..+.+.|.+++|..=|+.+++... +..+ ...++.+.-..++-..+ ...+..+...|+..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~--s~~~---~~eaqskl~~~~e~~~l----------------~~ql~s~~~~GD~~ 172 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEP--SNGL---VLEAQSKLALIQEHWVL----------------VQQLKSASGSGDCQ 172 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCC--Ccch---hHHHHHHHHhHHHHHHH----------------HHHHHHHhcCCchh
Confidence 456788899999998888887633 2111 11222222222222221 22233345567777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006640 336 GVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMI 415 (637)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 415 (637)
.+++....+++.. +.|...+..-..+|...|.+..|+.-++...+.. ..+...+--+-..+...|+.+.++...++..
T Consensus 173 ~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 173 NAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred hHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 8888888877765 3477777777778888888888888777776653 3355566666677778888888888888877
Q ss_pred HCCCCCCHHH----HHHH---------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCChhHHHH
Q 006640 416 ESGFHPNVVI----FTTI---------ISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTF---ETLMWGYSEARQPWRAEE 479 (637)
Q Consensus 416 ~~~~~~~~~~----~~~l---------i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~ 479 (637)
+. .||... |-.+ +......+++.++++..+...+..+....+.+ ..+-.++...|++.+|++
T Consensus 251 Kl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 251 KL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred cc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHH
Confidence 65 455431 1111 11244678888888888888876543233333 344456677889999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 006640 480 ILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 480 ~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
...+..+ +.|+ ..++..-..+|.-...+|+|+.-++++.+..+.
T Consensus 329 qC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 329 QCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 9988877 7777 668888889999999999999999999887654
No 95
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.94 E-value=2.8e-06 Score=86.03 Aligned_cols=200 Identities=18% Similarity=0.173 Sum_probs=117.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006640 361 NAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMD 440 (637)
Q Consensus 361 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 440 (637)
.+-.....+.+|+.+++.+.... .-..-|..+.+-|+..|+++.|.++|.+.- .++-.|..|.+.|+++
T Consensus 740 eaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence 34445566777777777666542 233345566667777777777777775542 2344566677777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006640 441 RAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 441 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
.|.++-++.. |.......|..-..-+-.+|++.+|.+++-.+. .|+. .+..|.+.|..++.+++.++-.
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhC
Confidence 7777665543 333344455555556666777777776654331 2332 3445667777777777666542
Q ss_pred hcccc---------ccccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhhhccccccCcccchhh
Q 006640 521 NKERT---------NEMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDADSSLECSW 591 (637)
Q Consensus 521 ~~~~~---------~~~~~~~~~a~~~~e~l~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~~~~k~~g~sw 591 (637)
-...| .+..++...|++.+-++ ..-.+ --|+|..++.|++|-++-+.--..+..|...+-|
T Consensus 878 ~d~l~dt~~~f~~e~e~~g~lkaae~~flea---~d~ka-------avnmyk~s~lw~dayriaktegg~n~~k~v~flw 947 (1636)
T KOG3616|consen 878 GDHLHDTHKHFAKELEAEGDLKAAEEHFLEA---GDFKA-------AVNMYKASELWEDAYRIAKTEGGANAEKHVAFLW 947 (1636)
T ss_pred hhhhhHHHHHHHHHHHhccChhHHHHHHHhh---hhHHH-------HHHHhhhhhhHHHHHHHHhccccccHHHHHHHHH
Confidence 11111 01223333332222111 11111 2378999999999999888887788888888989
Q ss_pred h
Q 006640 592 F 592 (637)
Q Consensus 592 i 592 (637)
.
T Consensus 948 a 948 (1636)
T KOG3616|consen 948 A 948 (1636)
T ss_pred H
Confidence 5
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.93 E-value=6e-08 Score=92.75 Aligned_cols=254 Identities=13% Similarity=0.109 Sum_probs=130.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHH
Q 006640 223 WCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEA 302 (637)
Q Consensus 223 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 302 (637)
+.-.|++..++.-.+ ........+......+.+++...|+++.++ .++.... .|.......+...+....+-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 334566666654444 221111112334445666677777665433 3332222 34444444444333332334444
Q ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 006640 303 LRFARTMKEYGVH-PNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGK 381 (637)
Q Consensus 303 ~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 381 (637)
+.-+++....... .+..........+...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444333322212 12222222223344556666666655431 3455666667777777777777777777765
Q ss_pred CCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006640 382 AGIKPDAHAYSILAKGYVR----EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPN 457 (637)
Q Consensus 382 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 457 (637)
. ..| .+...|..++.. .+.+.+|..+|+++.+. +++++.+.+.+..++...|++++|.+++++..+.+.. |
T Consensus 160 ~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~ 234 (290)
T PF04733_consen 160 I--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-D 234 (290)
T ss_dssp C--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-H
T ss_pred c--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-C
Confidence 4 223 233334443332 23577777777776654 4567777777777777777777777777777654432 5
Q ss_pred HHHHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHH
Q 006640 458 LKTFETLMWGYSEARQP-WRAEEILQIMKAFGVHPQKS 494 (637)
Q Consensus 458 ~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~ 494 (637)
+.++..++.+..+.|+. +.+.+++.++.. ..|+..
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~--~~p~h~ 270 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQ--SNPNHP 270 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHH--HTTTSH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHH--hCCCCh
Confidence 55677777777777776 445566666655 345543
No 97
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.93 E-value=2.5e-06 Score=86.38 Aligned_cols=26 Identities=12% Similarity=0.050 Sum_probs=15.7
Q ss_pred cccccccccccCCCchhhhhhhhccc
Q 006640 555 LLQIPNVVSSDQKGSAAALKKGRMLL 580 (637)
Q Consensus 555 ~~~L~~~y~~~g~~~~a~~~r~~~~~ 580 (637)
.+.|+.-+...|++++|.+-.....+
T Consensus 998 hlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 998 HLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred hhHHhhhhhhccchhhhhHhhHHHhh
Confidence 34556666677788777655544433
No 98
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.91 E-value=4.2e-08 Score=93.81 Aligned_cols=251 Identities=16% Similarity=0.166 Sum_probs=165.3
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHH
Q 006640 258 YAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGV 337 (637)
Q Consensus 258 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 337 (637)
+.-.|++..++.-.+ ......+.+......+.++|...|+++.++. .+.... .|.......+...+....+.+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 444688888876555 2222222234455567788889998876543 333333 56666666555544443455555
Q ss_pred HHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 338 DEVLALMKEFRVN-PDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 338 ~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
..-++........ .+.........++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555544333322 23333334445667789999999887642 4677888889999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 006640 417 SGFHPNVVIFTTIISGWC----SDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ 492 (637)
Q Consensus 417 ~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 492 (637)
. ..|.. ...+..++. -.+.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++++... ..|+
T Consensus 160 ~--~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--~~~~ 233 (290)
T PF04733_consen 160 I--DEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--KDPN 233 (290)
T ss_dssp C--SCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--C-CC
T ss_pred c--CCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccC
Confidence 5 34433 333444332 233699999999998765 457889999999999999999999999998765 3444
Q ss_pred -HHHHHHHHHHHHHcCCH-HHHHHHHHHHhhcccc
Q 006640 493 -KSTFLLLAEARRATGLT-KEAKRILSKIKNKERT 525 (637)
Q Consensus 493 -~~~~~~l~~~~~~~g~~-~eA~~~~~~~~~~~~~ 525 (637)
..+...++-+....|+. +.+.+++.++....|.
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 55788888888888988 7788999998766553
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.91 E-value=1.4e-05 Score=91.59 Aligned_cols=265 Identities=13% Similarity=0.062 Sum_probs=113.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCChhhHHHHHHH
Q 006640 222 AWCNEKNITEAWNVMHKMAASGMKPDV----VTYNTIATAYAQNGEADQAEEVIVEMEHN----GV-QPNGRTCGIIISG 292 (637)
Q Consensus 222 ~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~ 292 (637)
.+...|++++|...+++....-...+. ...+.+...+...|++++|...+.+.... |. .....++..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 344566666666666655442111111 22334444455566666666665554421 10 0011233344445
Q ss_pred HHHcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC----CCCCCHHHHHHHHH
Q 006640 293 YCKEGKIKEALRFARTMKEY----GVH--P-NLVIFNLLIKGFVEIMDRDGVDEVLALMKEF----RVNPDVITYSTIMN 361 (637)
Q Consensus 293 ~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~ 361 (637)
+...|++++|...+++.... +.. + ....+..+...+...|++++|...+...... +.......+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 55566666666655554321 110 0 1122333334444556666665555554321 10011222333444
Q ss_pred HHHHcCChHHHHHHHHHHHHCC--CCCCHH--HH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHH
Q 006640 362 AWSTAGFMDKCKEIFDDMGKAG--IKPDAH--AY--SILAKGYVREQEPEKAEELLMTMIESGFHPNV---VIFTTIISG 432 (637)
Q Consensus 362 ~~~~~g~~~~a~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~ 432 (637)
.+...|+.+.|...+....... ...... .. ...+..+...|+.+.|..++............ ..+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 4555666666666555543210 000000 00 00112233455666665555443321100000 112334445
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 433 WCSDGSMDRAIEVFDKMCEH----GVSPNL-KTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
+...|+.++|...+++.... |..++. .+...+..++...|+.++|...+.+..+
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55566666666666555431 221111 2344445555566666666666655543
No 100
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=5.6e-07 Score=89.17 Aligned_cols=220 Identities=14% Similarity=0.097 Sum_probs=123.7
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006640 80 NSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNME 159 (637)
Q Consensus 80 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 159 (637)
..+.++|++.+|.-.|+..+... +-+..+|..|....+...+-..|+..++++++.. +.+......|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34567777777777777776643 3366677777777777777677777777777664 455666677777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHH-----------HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 006640 160 EAMDTFWKMKESGLTPTTSTYNTLIK-----------GYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN 228 (637)
Q Consensus 160 ~A~~~~~~m~~~~~~~~~~~~~~li~-----------~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 228 (637)
+|.+.++.-+...++ |..+.. .+.....+....++|-++.......+|......|.-.|--.|+
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 777777666543211 110100 1111112233344444444443233455555555555656666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHH
Q 006640 229 ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPN-GRTCGIIISGYCKEGKIKEALRFAR 307 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~ 307 (637)
+++|...|+..+... +-|..+||-|...++...+.++|+..|.+.++. +|+ +.+...|.-.|...|.+++|.+.|-
T Consensus 446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 666666666655542 224455666666666656666666666655553 233 3444455555556666666655554
Q ss_pred HH
Q 006640 308 TM 309 (637)
Q Consensus 308 ~~ 309 (637)
..
T Consensus 523 ~A 524 (579)
T KOG1125|consen 523 EA 524 (579)
T ss_pred HH
Confidence 44
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.87 E-value=2.4e-05 Score=89.66 Aligned_cols=337 Identities=12% Similarity=0.022 Sum_probs=211.9
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------CCC--HHHHHHHHHH
Q 006640 186 GYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGM------KPD--VVTYNTIATA 257 (637)
Q Consensus 186 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~------~~~--~~~~~~li~~ 257 (637)
.....|+++.+...++.+.... ...+..........+...|++++|..++......-- .+. ......+...
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~-~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEV-LLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHH-HhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 3445677777777766653211 011222233445556678999999999987754310 111 1122233455
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHH
Q 006640 258 YAQNGEADQAEEVIVEMEHNGVQPNG----RTCGIIISGYCKEGKIKEALRFARTMKEYGV---HPN--LVIFNLLIKGF 328 (637)
Q Consensus 258 ~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~~~~~ll~~~ 328 (637)
+...|+++.|...+++....-...+. ...+.+...+...|++++|...+.+.....- .+. ..++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 67889999999999987663211121 2345566677889999999999988864311 111 23445566778
Q ss_pred HHcCCHhHHHHHHHHHHh----CCCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCC--CHHHHHHHHHH
Q 006640 329 VEIMDRDGVDEVLALMKE----FRVN--P-DVITYSTIMNAWSTAGFMDKCKEIFDDMGKA--GIKP--DAHAYSILAKG 397 (637)
Q Consensus 329 ~~~~~~~~a~~~~~~~~~----~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~--~~~~~~~l~~~ 397 (637)
...|++++|...+.+... .+.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 889999999998877544 2211 1 2233445566677789999999999887542 1112 23444556677
Q ss_pred HHHcCCHHHHHHHHHHHHHCCC-CCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHH
Q 006640 398 YVREQEPEKAEELLMTMIESGF-HPNVVIF-----TTIISGWCSDGSMDRAIEVFDKMCEHGVSPNL---KTFETLMWGY 468 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~ 468 (637)
+...|+++.|...+.+...... ......+ ...+..+...|+.+.|...+............ ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 8899999999999988754210 1111111 11224455689999999998776542111111 1245667788
Q ss_pred HhcCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 006640 469 SEARQPWRAEEILQIMKA----FGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 523 (637)
...|+.++|...+++... .|..++ ..+...+..++.+.|+.++|...+.++....
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 899999999999988753 343332 2356677788999999999999999987653
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=1e-05 Score=73.48 Aligned_cols=292 Identities=10% Similarity=0.092 Sum_probs=193.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHH
Q 006640 110 YTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYN-TLIKGYG 188 (637)
Q Consensus 110 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~li~~~~ 188 (637)
+.+++..+.+..++..|++++..-.++. +.+....+.|..+|-...++..|-..++++...- |.-.-|. --...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence 5566666677788999999988877765 5577888888899999999999999999998764 3333333 2345566
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006640 189 IAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRA--WCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQ 266 (637)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 266 (637)
+.+.+..|+++...|... ++...-..-+.+ ....+++..+..+.++....| +..+.+...-...+.|+++.
T Consensus 90 ~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 889999999999888652 232222222222 235678888888888776433 55555666666778999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------------CHH--------HHHHHH
Q 006640 267 AEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHP-------------NLV--------IFNLLI 325 (637)
Q Consensus 267 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~~--------~~~~ll 325 (637)
|.+-|+...+-+--.....|+..+ +..+.|+++.|+++..++++.|++. |+. .-+.++
T Consensus 163 AvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 999999887743323345666544 4557789999999999998876421 211 112222
Q ss_pred -------HHHHHcCCHhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006640 326 -------KGFVEIMDRDGVDEVLALMKE-FRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKG 397 (637)
Q Consensus 326 -------~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 397 (637)
..+.+.++++.|.+.+..|.. ..-..|++|...+.-. -..+++-....-+.-++..++ -...||..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHH
Confidence 234466777777777777632 2223456665544322 123445555555555555543 346777777788
Q ss_pred HHHcCCHHHHHHHHHHH
Q 006640 398 YVREQEPEKAEELLMTM 414 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~ 414 (637)
|||+.-++.|-+++.+-
T Consensus 320 yCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAEN 336 (459)
T ss_pred HhhhHHHhHHHHHHhhC
Confidence 88888888888777653
No 103
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.84 E-value=9e-06 Score=85.54 Aligned_cols=441 Identities=13% Similarity=-0.008 Sum_probs=276.8
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006640 122 RFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLD 201 (637)
Q Consensus 122 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 201 (637)
+...+...|-+..+.. +.=...|..|...|....+...|.+.|+...+.+.. +...+-.....|+...+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHH
Confidence 4666777666666643 333568999999999999999999999999987654 77889999999999999999999955
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006640 202 LMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQP 281 (637)
Q Consensus 202 ~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 281 (637)
...+......-...|.-..-.|.+.++...|..-|+...+.. +.|...|..+..+|...|.+..|.++|.+..... |
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--P 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--c
Confidence 444432111123445556667889999999999999998765 4478899999999999999999999999887653 3
Q ss_pred C-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCC-CHHHHHHHHHHHHHcCCHhHH-------HHHHHHHHhC
Q 006640 282 N-GRTCGIIISGYCKEGKIKEALRFARTMKEYG-----VHP-NLVIFNLLIKGFVEIMDRDGV-------DEVLALMKEF 347 (637)
Q Consensus 282 ~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~-~~~~~~~ll~~~~~~~~~~~a-------~~~~~~~~~~ 347 (637)
+ ...--....+-+..|.+.+|+..+....... ... -..++..+...+.-.|-...+ ++.|.-...+
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3 2222233445667899999998887775431 011 112222222222222222222 2222222222
Q ss_pred CCCCCHHHHHHHHHHHH-----------------------HcCCh---H---HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006640 348 RVNPDVITYSTIMNAWS-----------------------TAGFM---D---KCKEIFDDMGKAGIKPDAHAYSILAKGY 398 (637)
Q Consensus 348 ~~~~~~~~~~~li~~~~-----------------------~~g~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 398 (637)
....+...|-.+-++|. ..+.. + .|.+.+-.-.+ ...+..+|..|+..|
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINY 785 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHH
Confidence 21222223322222221 11111 1 01111111111 112344555555554
Q ss_pred HH----c----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006640 399 VR----E----QEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE 470 (637)
Q Consensus 399 ~~----~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 470 (637)
.+ + .+...|+..+++.++.. ..+..+|+.|.-. ...|++.-|.-.|-+-..... ....+|..+.-.|..
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep-~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEP-TCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccc-cchhheeccceeEEe
Confidence 43 1 23357888888887763 5677888888766 667888888888877766532 366789999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhcccc-------------------c----
Q 006640 471 ARQPWRAEEILQIMKAFGVHPQKS-TFLLLAEARRATGLTKEAKRILSKIKNKERT-------------------N---- 526 (637)
Q Consensus 471 ~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~-------------------~---- 526 (637)
..+++.|...|.+.+. +.|+.. -|..........|+.-++..+|.---+...+ +
T Consensus 863 n~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e 940 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIE 940 (1238)
T ss_pred cccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchH
Confidence 9999999999998876 556543 5666666667778777777777652111000 0
Q ss_pred ---cccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhh
Q 006640 527 ---EMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKG 576 (637)
Q Consensus 527 ---~~~~~~~~a~~~~e~l~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~ 576 (637)
...++..-|..++++.+...|+... +|...+...-..+.+.+|.....
T Consensus 941 ~~I~t~~ki~sAs~al~~yf~~~p~~~f--Ay~~~gstlEhL~ey~~a~ela~ 991 (1238)
T KOG1127|consen 941 ESINTARKISSASLALSYYFLGHPQLCF--AYAANGSTLEHLEEYRAALELAT 991 (1238)
T ss_pred HHHHHhhhhhhhHHHHHHHHhcCcchhH--HHHHHHhHHHHHHHHHHHHHHHH
Confidence 0112233444567788877777654 34555666666777777665543
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=8.7e-07 Score=87.82 Aligned_cols=249 Identities=9% Similarity=0.073 Sum_probs=121.8
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006640 188 GIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQA 267 (637)
Q Consensus 188 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 267 (637)
.+.|++.+|.-.|+...+.. |.+...|-.|.......++-..|+..+++.++.. +-+....-.|.-.|...|.-..|
T Consensus 296 m~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 35555555555555555543 3445555555555555555555555555555542 22344444555555555555555
Q ss_pred HHHHHHHHHCCCC--------CChhhHHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 006640 268 EEVIVEMEHNGVQ--------PNGRTCGIIISGYCKEGKIKEALRFARTM-KEYGVHPNLVIFNLLIKGFVEIMDRDGVD 338 (637)
Q Consensus 268 ~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 338 (637)
...++.-+...++ ++...-.. ..+.....+....++|-++ ...+..+|+.+...|.-.|--.|+++.|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 5555544332110 00000000 0111112222333333333 23333355555555555566666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006640 339 EVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD-AHAYSILAKGYVREQEPEKAEELLMTMIES 417 (637)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 417 (637)
..|+..+... +.|..+||.|...++...+.++|+..|++.++. .|. +.+...|.-.|...|.+++|.+.|-.++..
T Consensus 451 Dcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 6666665544 235556666666666666666666666666654 222 333444555566666666666665544321
Q ss_pred ---------CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006640 418 ---------GFHPNVVIFTTIISGWCSDGSMDRAIE 444 (637)
Q Consensus 418 ---------~~~~~~~~~~~li~~~~~~g~~~~A~~ 444 (637)
...++..+|..|=.++.-.++.|-+.+
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 011233456555555555555554433
No 105
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=0.00017 Score=74.67 Aligned_cols=393 Identities=15% Similarity=0.127 Sum_probs=229.1
Q ss_pred hhHHHHHHH--HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-C--------CCC
Q 006640 72 VRSMTKLMN--SLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEEN-G--------MDP 140 (637)
Q Consensus 72 ~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~--------~~~ 140 (637)
..+-..+++ .|..-|+.+.|.+-.+-+. +...|..+.+.|.+..+++-|.-.+-.|... | -.+
T Consensus 726 ~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 726 ESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred HHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 334444443 3556788888877666553 4567899999998888877776666555421 0 012
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 006640 141 DSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLV 220 (637)
Q Consensus 141 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li 220 (637)
+ ..-..+.-.....|.+++|..+|.+-.+ |..|=+.|-..|.+++|+++-+.--+ + .=..||....
T Consensus 800 ~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DR---i-HLr~Tyy~yA 865 (1416)
T KOG3617|consen 800 E-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDR---I-HLRNTYYNYA 865 (1416)
T ss_pred c-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccc---e-ehhhhHHHHH
Confidence 2 2223333345577899999999988775 45566778888999999888764322 1 1234666666
Q ss_pred HHHHhcCCHHHHHHHHHHHH----------HCC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006640 221 RAWCNEKNITEAWNVMHKMA----------ASG---------MKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQP 281 (637)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~~~----------~~g---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 281 (637)
.-+-..++.+.|++.|++.- ... -..|...|..........|+.+.|+.+|....+
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 66666777888877776531 111 112444555555555667788888877766543
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC------C--CCCH
Q 006640 282 NGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR------V--NPDV 353 (637)
Q Consensus 282 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~--~~~~ 353 (637)
|-+++...|-.|+.++|-++-++- -|......+...|...|+..+|...|....... . ..+.
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d 1010 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKD 1010 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 455666667778888887765543 356666777888888888888888776643210 0 0011
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--------HHH--CCCCCCH
Q 006640 354 ITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMT--------MIE--SGFHPNV 423 (637)
Q Consensus 354 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--------~~~--~~~~~~~ 423 (637)
..+|..+ .+...+.-.|-..|++. |. -+.--+..|-+.|.+.+|+++--+ ++. ..-..|+
T Consensus 1011 ~L~nlal--~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp 1080 (1416)
T KOG3617|consen 1011 RLANLAL--MSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDP 1080 (1416)
T ss_pred HHHHHHh--hcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCH
Confidence 1111110 01111222233333332 11 112234457777777777665321 122 2224567
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-HCCCCCCH----HHHHH
Q 006640 424 VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK-AFGVHPQK----STFLL 498 (637)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~p~~----~~~~~ 498 (637)
...+.-..-++.+.++++|..++-...+ |..-+..|...| +.-..++-+.|. ..+-.|+. .....
T Consensus 1081 ~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vLeq 1150 (1416)
T KOG3617|consen 1081 KLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVLEQ 1150 (1416)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHHHH
Confidence 7777777788888888888888766654 223344444333 223333334442 22233333 24567
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 006640 499 LAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 499 l~~~~~~~g~~~eA~~~~~~~ 519 (637)
+.+.|.++|.+..|.+-|-++
T Consensus 1151 vae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1151 VAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHhccchHHHHHHHhhh
Confidence 778899999888887766555
No 106
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=0.00039 Score=73.64 Aligned_cols=320 Identities=12% Similarity=0.159 Sum_probs=172.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006640 106 SLVTYTTLLAALTIQKRFNSIHSIMSQVEENG--MDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTL 183 (637)
Q Consensus 106 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 183 (637)
|+...+..+.++...+-+.+..+++++..-.+ +..+...-|.|+-...+. +.....+..+++-..+. ..+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa-------~~i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA-------PDI 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc-------hhH
Confidence 44555555666666666666666666654321 112223334444333332 33344444444433221 123
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006640 184 IKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGE 263 (637)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 263 (637)
.......+-+++|..+|++.. .+....+.|+. .-+.++.|.+.-++.. .+..|..+..+-.+.|.
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~------~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD------MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhc------ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCc
Confidence 344455566667777766542 24444444443 2344555555544432 34566677777777777
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 006640 264 ADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLAL 343 (637)
Q Consensus 264 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 343 (637)
..+|.+-|-+. .|+..|..+++...+.|.+++-.+++...++..-.|.+ =+.++-+|++.++..+.++.+
T Consensus 1120 v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi-- 1189 (1666)
T KOG0985|consen 1120 VKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI-- 1189 (1666)
T ss_pred hHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh--
Confidence 77666655332 35566667777777777777777766666555433333 245666666666655544433
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 006640 344 MKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNV 423 (637)
Q Consensus 344 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 423 (637)
..|+......+.+-|...+.++.|.-+|..+ ..|..|...+...|++..|.+.-++. .+.
T Consensus 1190 -----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ 1249 (1666)
T KOG0985|consen 1190 -----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NST 1249 (1666)
T ss_pred -----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cch
Confidence 1355555666666666666666666655433 23555666666666666666555443 245
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006640 424 VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQI 483 (637)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 483 (637)
.+|-.+-.+|...+.+.-| +|.-..+.....-+..|+.-|-..|-++|-+.+++.
T Consensus 1250 ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred hHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 6666666666655444333 222222223344455566666666666666655544
No 107
>PLN02789 farnesyltranstransferase
Probab=98.70 E-value=3.4e-05 Score=74.99 Aligned_cols=145 Identities=9% Similarity=0.025 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006640 74 SMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQK-RFNSIHSIMSQVEENGMDPDSIFFNAVINAF 152 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 152 (637)
++..+-..+...++.++|+.+.++++... +-+..+|+....++...| ++++++..++++.+.. +.+..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 44444455555667777777777776632 224445655555555555 4566666666666554 44555555554444
Q ss_pred HhcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 006640 153 SESGNM--EEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAW 223 (637)
Q Consensus 153 ~~~g~~--~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 223 (637)
.+.|.. ++++.+++++.+..+. +..+|+...-++...|+++++++.++++.+.+ +.|..+|+.....+
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl 186 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVI 186 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHH
Confidence 444442 4455555555555433 45555555555555556666666666655543 34445555444433
No 108
>PLN02789 farnesyltranstransferase
Probab=98.70 E-value=3.4e-05 Score=74.97 Aligned_cols=236 Identities=9% Similarity=0.038 Sum_probs=177.6
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHH
Q 006640 86 GKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESG-NMEEAMDT 164 (637)
Q Consensus 86 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~ 164 (637)
+++.+|...|+.+.. ..+..++|+.++.++++.. +-+..+|+....++...| ++++++..
T Consensus 34 ~~~~~a~~~~ra~l~------------------~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~ 94 (320)
T PLN02789 34 PEFREAMDYFRAVYA------------------SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDF 94 (320)
T ss_pred HHHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHH
Confidence 456666666666543 3467788999999998875 556678887777777877 68999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCh--HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006640 165 FWKMKESGLTPTTSTYNTLIKGYGIAGKP--EESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAAS 242 (637)
Q Consensus 165 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 242 (637)
++++.+..++ +..+|+...-.+.+.|+. ++++.+++++.+.. +.|..+|+...-++...|+++++++.++++++.
T Consensus 95 ~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 95 AEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred HHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 9999987655 666788766666667763 67899999998875 678999999999999999999999999999988
Q ss_pred CCCCCHHHHHHHHHHHHHc---CC----HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc----CCHHHHHHHHHHHHH
Q 006640 243 GMKPDVVTYNTIATAYAQN---GE----ADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKE----GKIKEALRFARTMKE 311 (637)
Q Consensus 243 g~~~~~~~~~~li~~~~~~---g~----~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~ 311 (637)
+. .|...|+.....+.+. |. .+.......+++...+ .|...|+.+...+... +...+|...+.+...
T Consensus 172 d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 172 DV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred CC-CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 64 3667777666555544 22 2467777767776643 5788899888888773 445678888888776
Q ss_pred cCCCCCHHHHHHHHHHHHHcC------------------CHhHHHHHHHHHHh
Q 006640 312 YGVHPNLVIFNLLIKGFVEIM------------------DRDGVDEVLALMKE 346 (637)
Q Consensus 312 ~~~~~~~~~~~~ll~~~~~~~------------------~~~~a~~~~~~~~~ 346 (637)
.+ +.+......++..|+... ..+.|..+++.+.+
T Consensus 250 ~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~ 301 (320)
T PLN02789 250 KD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEV 301 (320)
T ss_pred cc-CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHh
Confidence 54 557778888888887632 23678899888843
No 109
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.67 E-value=0.00013 Score=75.47 Aligned_cols=299 Identities=13% Similarity=0.125 Sum_probs=187.5
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHhC-C--------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 006640 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEG-G--------HKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDP 140 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~--------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 140 (637)
.+-..|..+.+++.+..+++-|.-.+-.|... | -.|+ .+=..+.......|-+++|+.+|++..+
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR----- 828 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR----- 828 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----
Confidence 45678999999999999888887766655321 1 1121 1111222223467889999999998876
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH----------HhcCCCC
Q 006640 141 DSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLM----------SREGNVK 210 (637)
Q Consensus 141 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----------~~~~~~~ 210 (637)
|..|=..|-..|.+++|.++-+.--+.. =..||.....-+-..++.+.|++.|++. .... |
T Consensus 829 ----~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~--p 899 (1416)
T KOG3617|consen 829 ----YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEY--P 899 (1416)
T ss_pred ----HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhC--h
Confidence 3445566778899999998876543321 2346666666677778888888888753 2211 2
Q ss_pred C----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 006640 211 P----------NLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQ 280 (637)
Q Consensus 211 ~----------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 280 (637)
+ |...|.-.....-..|+.+.|+.+|....+ |-++++..+-.|+.++|-++-++-
T Consensus 900 ~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------ 964 (1416)
T KOG3617|consen 900 KQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------ 964 (1416)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------
Confidence 2 222333333444457888888888877653 556888888899999998887653
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh---------------HHHHHHHHHH
Q 006640 281 PNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRD---------------GVDEVLALMK 345 (637)
Q Consensus 281 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---------------~a~~~~~~~~ 345 (637)
.|......|.+.|-..|++.+|..+|.+... +...|..|-.++-.+ .|-..|++
T Consensus 965 gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe-- 1033 (1416)
T KOG3617|consen 965 GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEE-- 1033 (1416)
T ss_pred ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHH--
Confidence 3667778899999999999999999987752 333333332222111 12222222
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH--------HHH--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006640 346 EFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDD--------MGK--AGIKPDAHAYSILAKGYVREQEPEKAEELLMTMI 415 (637)
Q Consensus 346 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--------~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 415 (637)
.|.. +...+..|-+.|.+.+|+++--+ ++. .....|+...+.-.+.++...++++|..++-...
T Consensus 1034 -~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1034 -LGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred -cchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 1211 12233456677777776654211 111 2234467777777777777888888877765443
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.66 E-value=2.2e-05 Score=85.51 Aligned_cols=205 Identities=11% Similarity=0.048 Sum_probs=109.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhH
Q 006640 212 NLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKP-----DVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTC 286 (637)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 286 (637)
+...|-..+....+.++.++|.++.++++.. +.+ -...|.++++.-..-|.-+...++|+++.+.. ....+|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 3455666666666666666666666666532 111 12345555555555555566666666665531 123455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH
Q 006640 287 GIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVN-PDVITYSTIMNAWST 365 (637)
Q Consensus 287 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~ 365 (637)
..|...|.+.+++++|.++++.|.+.- .-....|...+..+.+..+-+.|..++....+.-++ -......-.+..-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 566666666666666666666665431 234455666666666655555566666555443211 122233333344445
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006640 366 AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHP 421 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 421 (637)
.|+.+.++.+|+..+... +.-...|+.++++-.++|+.+.++.+|+++...++.|
T Consensus 1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 566666666665555432 2344556666666666666666666666655554433
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=3.7e-06 Score=85.69 Aligned_cols=222 Identities=13% Similarity=0.122 Sum_probs=177.6
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHH
Q 006640 280 QPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTI 359 (637)
Q Consensus 280 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 359 (637)
+|-...-..+...+...|-...|+.+|+++. .|...+..|...|+...|..+..+..+ -+||+..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence 3333444567888999999999999998775 577788899999999999999888877 36899999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006640 360 MNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSM 439 (637)
Q Consensus 360 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 439 (637)
.+......-+++|.++.+..... +-..+.......++++++.+.|+.-.+.+ +--..+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 98887777788898888875432 22223333345799999999999887764 66778999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006640 440 DRAIEVFDKMCEHGVSPN-LKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSK 518 (637)
Q Consensus 440 ~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~ 518 (637)
+.|.+.|..-... .|| ...|+.+-.+|.+.|+..+|...+++..+.+.. +...|....-+....|.+++|.+.+.+
T Consensus 536 q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 536 QAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHH
Confidence 9999999998874 455 458999999999999999999999999887744 444566666677899999999999999
Q ss_pred Hhhcc
Q 006640 519 IKNKE 523 (637)
Q Consensus 519 ~~~~~ 523 (637)
+....
T Consensus 613 ll~~~ 617 (777)
T KOG1128|consen 613 LLDLR 617 (777)
T ss_pred HHHhh
Confidence 86543
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=6.9e-06 Score=83.78 Aligned_cols=220 Identities=10% Similarity=0.032 Sum_probs=174.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006640 246 PDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLI 325 (637)
Q Consensus 246 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 325 (637)
|-...-..+...+...|-...|..+|+++ ..|...+.+|+..|+..+|..+..+..+. +|+...|..+.
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 33344456778888999999999999876 44677889999999999999999988874 78999999998
Q ss_pred HHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 006640 326 KGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPE 405 (637)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 405 (637)
+......-++.|.++.+..... .-..+.....+.++++++.+.|+.-.+.. +....+|-.+..+..+.++++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhH
Confidence 8877777778888877764332 11122222234789999999999877754 446788888888889999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006640 406 KAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 406 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
.|.+.|....... |.+...||.+-.+|.+.|+-.+|...+++..+.+. -+...|...+....+.|.+++|++.+.++.
T Consensus 537 ~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 537 AAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 9999999988763 55678999999999999999999999999998773 356677788888889999999999998885
Q ss_pred H
Q 006640 486 A 486 (637)
Q Consensus 486 ~ 486 (637)
+
T Consensus 615 ~ 615 (777)
T KOG1128|consen 615 D 615 (777)
T ss_pred H
Confidence 3
No 113
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.59 E-value=4.5e-05 Score=83.20 Aligned_cols=223 Identities=12% Similarity=0.081 Sum_probs=169.3
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCC---CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHH
Q 006640 281 PNGRTCGIIISGYCKEGKIKEALRFARTMKEY-GVH---PNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITY 356 (637)
Q Consensus 281 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 356 (637)
.....|-..+....+.++.++|++++++++.. +++ --...|.++++.-..-|.-+...++|+++.+.. .....|
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 34667888888888899999999999888643 111 123478888887777787788889999887753 234567
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHH
Q 006640 357 STIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHP--NVVIFTTIISGWC 434 (637)
Q Consensus 357 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~ 434 (637)
..|...|.+.+.+++|.++++.|.+. +.....+|...++.+.++.+-+.|..++.++.+.- |. ......-.+..-.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHh
Confidence 88899999999999999999999875 34577889999999999999999999999988752 22 2344555666677
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCC
Q 006640 435 SDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS--TFLLLAEARRATGL 508 (637)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~ 508 (637)
+.|+.+.+..+|+......++ ....|+.++..-.++|..+.++.+|++....++.|... .|...+..-...|+
T Consensus 1612 k~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 899999999999998876432 56689999999999999999999999998877776533 44445444444444
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.56 E-value=9.4e-06 Score=72.99 Aligned_cols=165 Identities=16% Similarity=0.108 Sum_probs=129.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006640 106 SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIK 185 (637)
Q Consensus 106 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 185 (637)
|... ..+-..+...|+-+....+........ +.|......++....+.|++..|...|.+.....+ +|..+|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHH
Confidence 4444 555677777788887777776654332 56677777788888999999999999999887654 48889999999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 006640 186 GYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEAD 265 (637)
Q Consensus 186 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 265 (637)
+|.+.|++++|..-|.+..+.. +-+....|.|.-.+.-.|+.+.|..++......+ .-|..+-..+.......|+++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChH
Confidence 9999999999999999888753 4556778888888889999999999998887764 336777777888888999999
Q ss_pred HHHHHHHHHHH
Q 006640 266 QAEEVIVEMEH 276 (637)
Q Consensus 266 ~A~~~~~~~~~ 276 (637)
+|..+...-..
T Consensus 220 ~A~~i~~~e~~ 230 (257)
T COG5010 220 EAEDIAVQELL 230 (257)
T ss_pred HHHhhcccccc
Confidence 99988766543
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.56 E-value=1.9e-05 Score=71.02 Aligned_cols=158 Identities=15% Similarity=0.048 Sum_probs=121.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006640 357 STIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSD 436 (637)
Q Consensus 357 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 436 (637)
..+-..+...|+-+....+....... .+.|......++....+.|++..|...|++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 55566677777777777777765433 24566677778888888999999999999888765 78888999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006640 437 GSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 437 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~ 516 (637)
|+.++|..-|.+..+.... ++..++.+.-.+.-.|+.+.|..++......+.. |...-..+.-+.+..|++++|+.+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 9999999998888885332 5667788888888889999999888887653322 5556667788888889999888876
Q ss_pred HH
Q 006640 517 SK 518 (637)
Q Consensus 517 ~~ 518 (637)
..
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 54
No 116
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.55 E-value=6.4e-05 Score=81.39 Aligned_cols=280 Identities=9% Similarity=0.082 Sum_probs=154.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 006640 210 KPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDV-VTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGI 288 (637)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 288 (637)
+.+...|..|+..+...+++++|.++.+...+. .|+. ..|..+...+.+.++.+.+..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 344566777777777777777777777765554 3332 3333333355555554444333 2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 006640 289 IISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGF 368 (637)
Q Consensus 289 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 368 (637)
++.......++.-...+...+.+. ..+...+..+..+|-+.|+.+++..+++++.+.. +.|+.+.|.+...|+.. +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 222222333332233333334332 2334466667777777777777777777777766 34677777777777777 7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006640 369 MDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDK 448 (637)
Q Consensus 369 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 448 (637)
+++|++++.+.... |...+++..+.++|.++.... +.|. +.-..+.++
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~----------------d~f~~i~~k 212 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDF----------------DFFLRIERK 212 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccc----------------hHHHHHHHH
Confidence 77777777666543 555667777777777777652 2222 222333333
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc
Q 006640 449 MCEH-GVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILSKIKNKERTN 526 (637)
Q Consensus 449 m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~ 526 (637)
+... |..--..++..+-..|....+++++..+++.+.+ +.|+ ......+++.|. +++.+ ...++.......-.
T Consensus 213 i~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~--~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~ 287 (906)
T PRK14720 213 VLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE--HDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIG 287 (906)
T ss_pred HHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh--cCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHhccc
Confidence 3322 2222344555666677777888888888888877 3343 334555555554 22222 22222222111111
Q ss_pred cccccccchHHHHHHHHhhhccC
Q 006640 527 EMEAEEDIPVESLERLYHKEATT 549 (637)
Q Consensus 527 ~~~~~~~~a~~~~e~l~~~~~~~ 549 (637)
...++...+..-.|+.+..++.+
T Consensus 288 ~~~~~~~~~i~~fek~i~f~~G~ 310 (906)
T PRK14720 288 NNRKPVKDCIADFEKNIVFDTGN 310 (906)
T ss_pred cCCccHHHHHHHHHHHeeecCCC
Confidence 12245566777778877666554
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.54 E-value=1.9e-05 Score=71.29 Aligned_cols=118 Identities=12% Similarity=0.112 Sum_probs=62.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 006640 366 AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGW-CSDGS--MDRA 442 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~A 442 (637)
.++.+++...++..++.. +.+...|..|...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 344445555555544443 3455555555555556666666666666555543 44555555555542 44444 3556
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 443 IEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 443 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
.+++++..+.+.. +...+..+...+...|++++|+..|+++.+
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666655554322 444555555555556666666666655544
No 118
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.53 E-value=1.5e-05 Score=75.06 Aligned_cols=187 Identities=10% Similarity=-0.057 Sum_probs=105.2
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHH
Q 006640 317 NLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNP--DVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA--HAYS 392 (637)
Q Consensus 317 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~ 392 (637)
....+..+...+...|+++.|...++.+....+.. ....+..+..++...|++++|+..++.+.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 44555666666666666666666666665543211 1134455566666666666666666666654321111 1344
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006640 393 ILAKGYVRE--------QEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETL 464 (637)
Q Consensus 393 ~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 464 (637)
.+...+.+. |++++|.+.|+++.+.. +.+...+..+...... .. .. ......+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~~----~~------~~--------~~~~~~~ 172 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDYL----RN------RL--------AGKELYV 172 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHHH----HH------HH--------HHHHHHH
Confidence 444444443 55666666666665542 2222222221111000 00 00 0011245
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 006640 465 MWGYSEARQPWRAEEILQIMKAFG-VHP-QKSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
...+.+.|++++|...+++..+.. -.| ....+..++.++...|++++|..+++.+..+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 567888899999999998886532 123 2457888899999999999999988887554
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.51 E-value=3.2e-05 Score=69.88 Aligned_cols=149 Identities=13% Similarity=0.161 Sum_probs=116.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006640 360 MNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSM 439 (637)
Q Consensus 360 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 439 (637)
+..|...|+++......+.+.. |. ..|...++.+++...++...+.+ +.|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3467888888776544433221 11 01223677788888888888775 78999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--hhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 006640 440 DRAIEVFDKMCEHGVSPNLKTFETLMWGY-SEARQ--PWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRI 515 (637)
Q Consensus 440 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~ 515 (637)
++|+..|++..+.... +...+..+..++ ...|+ .++|.+++++..+ ..|+ ...+..+...+.+.|++++|...
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~--~dP~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALA--LDANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999986533 677888888864 67777 5999999999988 4454 56788899999999999999999
Q ss_pred HHHHhhccc
Q 006640 516 LSKIKNKER 524 (637)
Q Consensus 516 ~~~~~~~~~ 524 (637)
++++....+
T Consensus 167 ~~~aL~l~~ 175 (198)
T PRK10370 167 WQKVLDLNS 175 (198)
T ss_pred HHHHHhhCC
Confidence 999987755
No 120
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.50 E-value=3.5e-05 Score=72.60 Aligned_cols=60 Identities=17% Similarity=0.100 Sum_probs=38.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006640 253 TIATAYAQNGEADQAEEVIVEMEHNGV--QPNGRTCGIIISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 253 ~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
.+...+.+.|++++|...+....+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 355566777777777777777665422 112456667777777777777777777766543
No 121
>PF12854 PPR_1: PPR repeat
Probab=98.49 E-value=2.1e-07 Score=56.40 Aligned_cols=32 Identities=47% Similarity=1.027 Sum_probs=17.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006640 418 GFHPNVVIFTTIISGWCSDGSMDRAIEVFDKM 449 (637)
Q Consensus 418 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 449 (637)
|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 122
>PF12854 PPR_1: PPR repeat
Probab=98.49 E-value=1.9e-07 Score=56.58 Aligned_cols=31 Identities=48% Similarity=0.766 Sum_probs=13.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006640 173 LTPTTSTYNTLIKGYGIAGKPEESVKLLDLM 203 (637)
Q Consensus 173 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 203 (637)
+.||..+|++||++|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3344444444444444444444444444433
No 123
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=0.00022 Score=64.26 Aligned_cols=140 Identities=11% Similarity=0.097 Sum_probs=66.5
Q ss_pred HHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c
Q 006640 326 KGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVR----E 401 (637)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 401 (637)
..|+..+++++|.+...... +......=+..+.+..+++.|.+.++.|..- .+..+.+-|..++.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 34555555555555544311 1222222223334445555555555555442 233444444444432 2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 006640 402 QEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWR 476 (637)
Q Consensus 402 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 476 (637)
+.+.+|.-+|++|.++ .+|++.+.+....++...|++++|..++++++..... ++.++..++..-.+.|+..+
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAE 259 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChH
Confidence 3345555555555543 2455555555555555555555555555555544322 44555555554445554433
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.45 E-value=3.3e-05 Score=83.58 Aligned_cols=226 Identities=16% Similarity=0.152 Sum_probs=142.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006640 247 DVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIK 326 (637)
Q Consensus 247 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 326 (637)
+...+..|+..+...+++++|.++.+...+... .....|..+...+.+.++.+++..+ . ++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P-~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHK-KSISALYISGILSLSRRPLNDSNLL--N---------------LID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-cceehHHHHHHHHHhhcchhhhhhh--h---------------hhh
Confidence 456777888888888888888888886665422 2234444444466666665555444 2 222
Q ss_pred HHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006640 327 GFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEK 406 (637)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 406 (637)
......++..+..+...+...+ -+...+..+..+|.+.|+.+++..+++++++.. +.|+.+.|.+...|... ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 2233333333333444444432 344577778888888888888888888888876 55788888888888888 8888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 407 AEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 407 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
|.+++.+.... +...+++..+.++|.++.+..+. |...|..+......+-
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~-------------- 217 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHR-------------- 217 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhh--------------
Confidence 88888887653 55666888888888888875422 3334444443332221
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 006640 487 FGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 487 ~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
|..--..++.-+...|....+++++..+++.+....+.
T Consensus 218 -~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 218 -EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK 255 (906)
T ss_pred -ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc
Confidence 11112234444556667777788888888777766553
No 125
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.45 E-value=1.7e-05 Score=67.62 Aligned_cols=94 Identities=10% Similarity=-0.036 Sum_probs=56.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006640 391 YSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE 470 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 470 (637)
+..+...+...|++++|...|+...... +.+...|..+..++...|++++|+..|+++.+... .+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence 3344555566666666666666666553 44556666666666666666666666666665432 245566666666666
Q ss_pred cCChhHHHHHHHHHHH
Q 006640 471 ARQPWRAEEILQIMKA 486 (637)
Q Consensus 471 ~g~~~~A~~~~~~m~~ 486 (637)
.|+.++|+..|+...+
T Consensus 105 ~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 105 MGEPGLAREAFQTAIK 120 (144)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666666655
No 126
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.44 E-value=0.0024 Score=63.52 Aligned_cols=415 Identities=11% Similarity=0.079 Sum_probs=250.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006640 104 KPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTL 183 (637)
Q Consensus 104 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 183 (637)
+-|..+|+.||+-+..+ ..+++++.++++... ++.....|..-|..-.+..+++..+++|.+....- .+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 45999999999987666 899999999999865 46677889999999999999999999999977653 356677766
Q ss_pred HHHHHh-cCChHH----HHHHHHHHHhcCCCC-CCHHHHHHHHHH---------HHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006640 184 IKGYGI-AGKPEE----SVKLLDLMSREGNVK-PNLRTYNVLVRA---------WCNEKNITEAWNVMHKMAASGMKPDV 248 (637)
Q Consensus 184 i~~~~~-~g~~~~----A~~~~~~m~~~~~~~-~~~~~~~~li~~---------~~~~g~~~~A~~~~~~~~~~g~~~~~ 248 (637)
++---+ .|+... ..+.|+-....-++. .+...|+..+.. |..+.+++...+++++++..-+..=.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 654332 233332 233344433332222 233456555543 33455777888888888754222112
Q ss_pred HHHH------HHHHHH-------HHcCCHHHHHHHHHHHHH--CCCCCChhh---------------HHHHHHHHHHcC-
Q 006640 249 VTYN------TIATAY-------AQNGEADQAEEVIVEMEH--NGVQPNGRT---------------CGIIISGYCKEG- 297 (637)
Q Consensus 249 ~~~~------~li~~~-------~~~g~~~~A~~~~~~~~~--~~~~~~~~~---------------~~~li~~~~~~g- 297 (637)
..|+ .=|+.. -+...+-.|.++++++.. .|...+..+ |-.+|.---.++
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 2222 111111 123346677777777643 233222221 322332111111
Q ss_pred -----CH--HHHHHHHHHHH-HcCCCCCHHHHHH-----HHHHHHHcCC-------HhHHHHHHHHHHhCCCCCCHHHHH
Q 006640 298 -----KI--KEALRFARTMK-EYGVHPNLVIFNL-----LIKGFVEIMD-------RDGVDEVLALMKEFRVNPDVITYS 357 (637)
Q Consensus 298 -----~~--~~A~~~~~~~~-~~~~~~~~~~~~~-----ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~ 357 (637)
.. ....-.+++.. -.+..|++.-..+ .-+.+...|+ .+++..+++.....-...+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 01111222221 1122232211100 1112222333 345556666555433333444444
Q ss_pred HHHHHHHHcC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 006640 358 TIMNAWSTAG---FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHP-NVVIFTTIISGW 433 (637)
Q Consensus 358 ~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~ 433 (637)
.+.+---..- ..+....++.+++..-...-.-+|..+++.-.+..-+..|+.+|.++.+.+..+ ++...++++.-|
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 4433221122 255556666666553222234467777777778888999999999999987666 666777777755
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHH
Q 006640 434 CSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK--STFLLLAEARRATGLTKE 511 (637)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~e 511 (637)
| .++...|.++|+--++. ..-++.--...+.-+.+.++-..+..+|++....++.|+. ++|..+++--...|++..
T Consensus 413 c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred h-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 5 57889999999987664 2224445557788889999999999999999877777764 589999999999999999
Q ss_pred HHHHHHHHhhccc
Q 006640 512 AKRILSKIKNKER 524 (637)
Q Consensus 512 A~~~~~~~~~~~~ 524 (637)
+.++-+++....+
T Consensus 491 i~~lekR~~~af~ 503 (656)
T KOG1914|consen 491 ILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHHHhcc
Confidence 9999888865544
No 127
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.37 E-value=2.3e-05 Score=66.92 Aligned_cols=95 Identities=6% Similarity=-0.121 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006640 110 YTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI 189 (637)
Q Consensus 110 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 189 (637)
+.....++...|++++|...|+.+.... +.+...+..+..++...|++++|...|++..+.++. +...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 3344555566666666666666666554 445566666666666666666666666666665432 55566666666666
Q ss_pred cCChHHHHHHHHHHHhc
Q 006640 190 AGKPEESVKLLDLMSRE 206 (637)
Q Consensus 190 ~g~~~~A~~~~~~m~~~ 206 (637)
.|++++|+..|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666666554
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.37 E-value=0.00028 Score=75.87 Aligned_cols=182 Identities=12% Similarity=0.138 Sum_probs=131.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHH
Q 006640 138 MDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYN 217 (637)
Q Consensus 138 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 217 (637)
.+.++..+-.|.......|.+++|..+++...+..+. +......++..+.+.+++++|+..+++..... |.+....+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHH
Confidence 3566888888888888999999999999999887543 56677888888999999999999999988865 55677788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC
Q 006640 218 VLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEG 297 (637)
Q Consensus 218 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 297 (637)
.+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+..- +....|+.++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~-~~~~~~~~~~~------ 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG-DGARKLTRRLV------ 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-cchHHHHHHHH------
Confidence 88888889999999999999998743 33578888888889999999999999988876532 33444444332
Q ss_pred CHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHH
Q 006640 298 KIKEALRFARTMKEYG----VHPNLVIFNLLIKGFVE 330 (637)
Q Consensus 298 ~~~~A~~~~~~~~~~~----~~~~~~~~~~ll~~~~~ 330 (637)
++..-..+++++.-.+ .+..+.+...++.-|.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 231 DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence 3333444555553322 22233444445544443
No 129
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=0.00056 Score=61.78 Aligned_cols=236 Identities=14% Similarity=0.072 Sum_probs=109.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006640 79 MNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNM 158 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 158 (637)
++-+.-.|++..++..-..... .+.++..-..+-++|...|.+.....-. .. |-.|.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~--~~~~~e~d~y~~raylAlg~~~~~~~eI---~~-~~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSS--SKTDVELDVYMYRAYLALGQYQIVISEI---KE-GKATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcc--ccchhHHHHHHHHHHHHccccccccccc---cc-ccCChHHHHHHHHHHhhCcchh
Confidence 3445555777666654444332 2234455555566777666654433221 11 1122222222222222222332
Q ss_pred HHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006640 159 EEAM-DTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMH 237 (637)
Q Consensus 159 ~~A~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 237 (637)
+.-. .+.+.+......-+......-...|+..|++++|++..... .+......=+..+.+..+++-|.+.++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-------~~lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-------ENLEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 23333333322212222223334556666666666665541 133333333444555566666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 006640 238 KMAASGMKPDVVTYNTIATAYAQ----NGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYG 313 (637)
Q Consensus 238 ~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 313 (637)
+|.+.. +..|.+.|..++.+ .+.+..|.-+|++|-++ .+|+..+.+-...++...|++++|..+++......
T Consensus 162 ~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 162 KMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 665432 44455545444443 23455566666665442 23555555555555666666666666666655543
Q ss_pred CCCCHHHHHHHHHHHHHcC
Q 006640 314 VHPNLVIFNLLIKGFVEIM 332 (637)
Q Consensus 314 ~~~~~~~~~~ll~~~~~~~ 332 (637)
..++.+...++..-...|
T Consensus 238 -~~dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 238 -AKDPETLANLIVLALHLG 255 (299)
T ss_pred -CCCHHHHHHHHHHHHHhC
Confidence 233444444433333333
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.33 E-value=3.1e-05 Score=65.65 Aligned_cols=96 Identities=10% Similarity=0.038 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006640 389 HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGY 468 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 468 (637)
.....+...+.+.|++++|...|+.+...+ +.+...|..+...+...|++++|..+|++..+.+ +.+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 334444555555555555555555555443 3455555555555555555555555555555433 12344455555555
Q ss_pred HhcCChhHHHHHHHHHHH
Q 006640 469 SEARQPWRAEEILQIMKA 486 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~ 486 (637)
...|++++|...|+...+
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 96 LALGEPESALKALDLAIE 113 (135)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555544
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.32 E-value=0.00014 Score=78.18 Aligned_cols=146 Identities=10% Similarity=0.042 Sum_probs=125.5
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006640 103 HKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNT 182 (637)
Q Consensus 103 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 182 (637)
+..++..+-.|..+..+.|.+++|..+++.+.+.. |-+......+...+.+.+++++|+..+++.....+. +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 55678899999999999999999999999999874 556778888999999999999999999999998755 7778888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006640 183 LIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNT 253 (637)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 253 (637)
+..++.+.|++++|..+|+++...+ +.+..++..+..++-..|+.++|...|++..+.- .+...-|+.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~ 227 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTR 227 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHH
Confidence 9999999999999999999999854 4568999999999999999999999999998752 334444443
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.24 E-value=6.3e-05 Score=63.76 Aligned_cols=96 Identities=13% Similarity=0.083 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 006640 143 IFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRA 222 (637)
Q Consensus 143 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 222 (637)
.....+...+...|++++|...|+.+...++. +...|..+...+...|++++|...++...... +.+...+..+...
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~ 94 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHH
Confidence 33444444444555555555555555444322 44445555555555555555555555544432 3344444445555
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 006640 223 WCNEKNITEAWNVMHKMAA 241 (637)
Q Consensus 223 ~~~~g~~~~A~~~~~~~~~ 241 (637)
+...|++++|...|+...+
T Consensus 95 ~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 95 LLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555444
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=0.0021 Score=57.77 Aligned_cols=186 Identities=12% Similarity=0.081 Sum_probs=113.4
Q ss_pred CHHHHHHHHHHHHH---CC-CCCCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHH
Q 006640 263 EADQAEEVIVEMEH---NG-VQPNG-RTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGV 337 (637)
Q Consensus 263 ~~~~A~~~~~~~~~---~~-~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 337 (637)
+.++..+++.++.. .| ..++. ..|..++-+....|+.+.|..+++++...- +.+..+-..-.-.+-..|.+++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhH
Confidence 44555555554432 12 22332 233444555566777777777777776542 22222222222224456777778
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006640 338 DEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIES 417 (637)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 417 (637)
+++++.+.+.+ +.|..++-.-+...-..|+--+|++-+....+. +..|...|.-|...|...|++++|.-.++++.-.
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 88887777765 345666666666666667766777777666654 4567888888888888888888888888887765
Q ss_pred CCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHC
Q 006640 418 GFHPNVVIFTTIISGWCSDG---SMDRAIEVFDKMCEH 452 (637)
Q Consensus 418 ~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 452 (637)
. |-++..+..+...+...| +.+.|.++|.+..+.
T Consensus 184 ~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 184 Q-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred C-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 3 555666666666544443 456677777777764
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=0.0017 Score=58.27 Aligned_cols=153 Identities=14% Similarity=0.129 Sum_probs=73.8
Q ss_pred CChhHHHHHHHHHHhC---C-CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006640 86 GKPQEAQAIFNNLIEG---G-HKPSLV-TYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEE 160 (637)
Q Consensus 86 g~~~~A~~~~~~~~~~---~-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 160 (637)
.++++.++++.+++.. | ..++.. .|..++-+....|+.+.|...+..+...= +.+..+--.=.-.+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 4556666666655431 2 223332 23333444445555555555555554431 2221111111112333455556
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006640 161 AMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMA 240 (637)
Q Consensus 161 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 240 (637)
|+++++.+.+.++. |.+++-.-+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.+++++
T Consensus 105 A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 105 AIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 66666655555422 4444444444444455555555555555544 34555555555555555555555555555555
Q ss_pred HC
Q 006640 241 AS 242 (637)
Q Consensus 241 ~~ 242 (637)
-.
T Consensus 182 l~ 183 (289)
T KOG3060|consen 182 LI 183 (289)
T ss_pred Hc
Confidence 43
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.21 E-value=0.00078 Score=66.28 Aligned_cols=239 Identities=18% Similarity=0.156 Sum_probs=146.8
Q ss_pred HHHHHHcC-ChhHHHHHHHHHH---hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHH
Q 006640 79 MNSLIERG-KPQEAQAIFNNLI---EGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENG--MDPDSIFFNAVINAF 152 (637)
Q Consensus 79 ~~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~ 152 (637)
+..+.+.| ++....+.|+++. ..+-.|+.+..+.=+ -..+...+...-+.+...+ -.|+...+...+.+.
T Consensus 209 i~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~THPl----p~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~ 284 (484)
T COG4783 209 ITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTHPL----PEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAK 284 (484)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcCCC----chhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHH
Confidence 44556666 4555667888887 334344433221111 0112223333333332211 134555555555544
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006640 153 SESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEA 232 (637)
Q Consensus 153 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A 232 (637)
.....-..+-..+.+..+. . ....+.-..-.+...|++++|+..++.+.... |.|...+......+.+.++..+|
T Consensus 285 ~~~~~~~~~~~~~~~~~~~--~-~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A 359 (484)
T COG4783 285 YEALPNQQAADLLAKRSKR--G-GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEA 359 (484)
T ss_pred hccccccchHHHHHHHhCc--c-chHHHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHH
Confidence 4333333333333222221 1 22233333344457888888888888887763 56677777778888888888888
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 233 WNVMHKMAASGMKPD-VVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 233 ~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
.+.+++++.. .|+ ......+..++.+.|++.+|..+++...... +.|...|..|..+|...|+..++.....+..
T Consensus 360 ~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~- 435 (484)
T COG4783 360 IERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGY- 435 (484)
T ss_pred HHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH-
Confidence 8888888876 444 5666678888888888888888888877654 3578888888888888888888887776664
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC
Q 006640 312 YGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEF 347 (637)
Q Consensus 312 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 347 (637)
...|+++.|...+....+.
T Consensus 436 -----------------~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 436 -----------------ALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred -----------------HhCCCHHHHHHHHHHHHHh
Confidence 3457777777777666554
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.19 E-value=0.00091 Score=65.84 Aligned_cols=112 Identities=13% Similarity=0.219 Sum_probs=55.0
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 006640 119 IQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVK 198 (637)
Q Consensus 119 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 198 (637)
..|+++.|+..++.+++.- |-|+..+......+.+.++.++|.+.++++....+. ....+..+..+|.+.|++.+|+.
T Consensus 318 ~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHH
Confidence 3445555555555544432 334444444445555555555555555555544221 13444445555555555555555
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006640 199 LLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWN 234 (637)
Q Consensus 199 ~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 234 (637)
+++...... |.|...|..|..+|...|+..++..
T Consensus 396 ~L~~~~~~~--p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 396 ILNRYLFND--PEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHhhcC--CCCchHHHHHHHHHHHhCchHHHHH
Confidence 555554442 4445555555555555555544443
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.10 E-value=0.00025 Score=60.79 Aligned_cols=126 Identities=18% Similarity=0.109 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHH
Q 006640 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNV---VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNL--KTFETL 464 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l 464 (637)
.|..++..+ ..++...+...++.+.+.. +.+. ...-.+...+...|++++|...|+...+....|+. .....|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 4677777777777777653 3331 23333456677778888888888888775533322 244456
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 465 MWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
...+...|++++|+..++..... ......+...++++.+.|++++|...+++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777888888888887653321 223345667778888888888888877654
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.02 E-value=0.00025 Score=70.36 Aligned_cols=126 Identities=17% Similarity=0.253 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 006640 143 IFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRA 222 (637)
Q Consensus 143 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 222 (637)
.....|+..+...++++.|..+|+++.+.. |+ ....+++.+...++..+|++++++..... +.+...+......
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 344455555666677777777777777653 23 34456666667777777777777776543 4456666666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006640 223 WCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEME 275 (637)
Q Consensus 223 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 275 (637)
+.+.++.+.|+.+.+++.... +.+-.+|..|..+|.+.|+++.|+..++.+.
T Consensus 244 Ll~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777777776652 2233467777777777777777776666553
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.98 E-value=0.00026 Score=70.33 Aligned_cols=126 Identities=12% Similarity=0.134 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006640 109 TYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYG 188 (637)
Q Consensus 109 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 188 (637)
....+++.+...++++.|..+++++.+.. |++ ...++..+...++-.+|.+++.+..+..+. +..........+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 33445555666677777777777777653 443 334666666677777777777777654332 5556666667777
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006640 189 IAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAA 241 (637)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 241 (637)
+.++++.|+++.+++.... |.+..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 246 ~k~~~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 7777777777777777653 33455777777777777777777777776653
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.97 E-value=0.00056 Score=58.61 Aligned_cols=21 Identities=29% Similarity=0.273 Sum_probs=9.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 006640 150 NAFSESGNMEEAMDTFWKMKE 170 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~m~~ 170 (637)
..+...|++++|...|+.+..
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHh
Confidence 333344444444444444444
No 141
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.97 E-value=0.031 Score=57.55 Aligned_cols=205 Identities=9% Similarity=0.044 Sum_probs=123.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH----------HhcCCHHHHHHHHHHHHHCCC
Q 006640 104 KPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAF----------SESGNMEEAMDTFWKMKESGL 173 (637)
Q Consensus 104 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----------~~~g~~~~A~~~~~~m~~~~~ 173 (637)
.|.+..|..+.......-.++.|...|-+... -+.+.....|-... +--|++++|.++|-+|-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 57888888888776666677777776655432 12221111111111 12377888888887776542
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006640 174 TPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNT 253 (637)
Q Consensus 174 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 253 (637)
..|..+.+.|++-...++++.-.....-.--...|+.+...+.....+++|.++|..-.. . ..
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~ 827 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T---EN 827 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h---Hh
Confidence 235666677777666665543111100001135678888888888888888888765432 1 12
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 006640 254 IATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMD 333 (637)
Q Consensus 254 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 333 (637)
.+.++.+..++++-+.+...+ +.+....-.+.+++...|.-++|.+.|-+-. .| ...+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHH
Confidence 566666666666655544433 3456667778888888888888887764432 22 234556777777
Q ss_pred HhHHHHHHHH
Q 006640 334 RDGVDEVLAL 343 (637)
Q Consensus 334 ~~~a~~~~~~ 343 (637)
+.+|.++-+.
T Consensus 894 W~~avelaq~ 903 (1189)
T KOG2041|consen 894 WGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHh
Confidence 7777776554
No 142
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.96 E-value=0.04 Score=58.60 Aligned_cols=201 Identities=9% Similarity=0.052 Sum_probs=127.3
Q ss_pred HHHHHHHH--HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006640 75 MTKLMNSL--IERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAF 152 (637)
Q Consensus 75 ~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 152 (637)
|...+.++ .+.|+.++|..+++.....+.. |..|...+-.+|...++.++|..+|++..+. .|+......+..+|
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmay 120 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAY 120 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHH
Confidence 33344444 5788999999888877654332 7778888888888899999999999988875 46677777888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 006640 153 SESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGK----------PEESVKLLDLMSREGNVKPNLRTYNVLVRA 222 (637)
Q Consensus 153 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 222 (637)
++.+++.+-.++--++-+. .+-+++.+=++++.+.+.-. ..-|.+.++.+.+.++.-.+..-...-...
T Consensus 121 vR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~i 199 (932)
T KOG2053|consen 121 VREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLI 199 (932)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHH
Confidence 8888776544444444332 22245555555555544321 234566666666654211122222333344
Q ss_pred HHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 006640 223 WCNEKNITEAWNVMH-KMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGV 279 (637)
Q Consensus 223 ~~~~g~~~~A~~~~~-~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 279 (637)
....|++++|++++. ...+.-...+...-+.-+..+...+++.+..++-.++...|.
T Consensus 200 L~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 200 LELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 556788888888883 333332333445555667777778888888888777777654
No 143
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.92 E-value=2e-05 Score=48.46 Aligned_cols=33 Identities=36% Similarity=0.900 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006640 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPN 457 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 457 (637)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
No 144
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.85 E-value=2.6e-05 Score=47.92 Aligned_cols=33 Identities=27% Similarity=0.622 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC
Q 006640 74 SMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPS 106 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 106 (637)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 677788888888888888888888877777776
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.81 E-value=0.00043 Score=53.92 Aligned_cols=89 Identities=19% Similarity=0.205 Sum_probs=38.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006640 394 LAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQ 473 (637)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 473 (637)
+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|.+.|+....... .+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHh
Confidence 3344444444444444444444432 22233444444444444444444444444444321 122334444444444444
Q ss_pred hhHHHHHHHHH
Q 006640 474 PWRAEEILQIM 484 (637)
Q Consensus 474 ~~~A~~~~~~m 484 (637)
+++|...++..
T Consensus 84 ~~~a~~~~~~~ 94 (100)
T cd00189 84 YEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 146
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.77 E-value=5.3e-05 Score=46.19 Aligned_cols=32 Identities=31% Similarity=0.679 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006640 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVSP 456 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 456 (637)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
No 147
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.77 E-value=5e-05 Score=46.29 Aligned_cols=33 Identities=27% Similarity=0.569 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 006640 73 RSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKP 105 (637)
Q Consensus 73 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 105 (637)
.+|+.++.++++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777766665
No 148
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.76 E-value=0.086 Score=56.24 Aligned_cols=225 Identities=12% Similarity=0.124 Sum_probs=152.7
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006640 81 SLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAAL--TIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNM 158 (637)
Q Consensus 81 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 158 (637)
.....+++..|++....+.+. .|+.. |..++.++ .+.|+.++|..+++.....+ ..|..+...+-..|...++.
T Consensus 18 d~ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhh
Confidence 345678999999999998875 35543 34444444 68899999999888877665 44888999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC----------C
Q 006640 159 EEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEK----------N 228 (637)
Q Consensus 159 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g----------~ 228 (637)
++|..+|++..+.. |+......+..+|++.+.+.+-.+.--++-+. .|.+...+=++++.+.+.- -
T Consensus 94 d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilqs~~~~~~~~~~i~ 169 (932)
T KOG2053|consen 94 DEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQSIFSENELLDPIL 169 (932)
T ss_pred hHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHhccCCcccccchh
Confidence 99999999998763 56777778888888888776644444444332 3444544444444443321 1
Q ss_pred HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 006640 229 ITEAWNVMHKMAASG-MKPDVVTYNTIATAYAQNGEADQAEEVIVE-MEHNGVQPNGRTCGIIISGYCKEGKIKEALRFA 306 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 306 (637)
..-|.+.++.+.+.+ ..-+..-...-...+...|++++|.+++.. ..+.-..-+...-+.-++.+...+++.+..++-
T Consensus 170 l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~ 249 (932)
T KOG2053|consen 170 LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELS 249 (932)
T ss_pred HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHH
Confidence 234666677776554 111222122223345678899999999843 333323334445556778888999999999999
Q ss_pred HHHHHcC
Q 006640 307 RTMKEYG 313 (637)
Q Consensus 307 ~~~~~~~ 313 (637)
.++...|
T Consensus 250 ~~Ll~k~ 256 (932)
T KOG2053|consen 250 SRLLEKG 256 (932)
T ss_pred HHHHHhC
Confidence 9998876
No 149
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.75 E-value=0.0022 Score=54.03 Aligned_cols=93 Identities=10% Similarity=-0.036 Sum_probs=60.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006640 391 YSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE 470 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 470 (637)
.-.+..-+...|++++|..+|+.+.... +-+...|-.|..++-..|++++|+..|..+....+ -|+..+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 3344445566677777777777666653 45566666677777777777777777777766553 256666666667777
Q ss_pred cCChhHHHHHHHHHH
Q 006640 471 ARQPWRAEEILQIMK 485 (637)
Q Consensus 471 ~g~~~~A~~~~~~m~ 485 (637)
.|+.+.|.+.|+...
T Consensus 116 lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 116 CDNVCYAIKALKAVV 130 (157)
T ss_pred cCCHHHHHHHHHHHH
Confidence 777777777776654
No 150
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.74 E-value=0.001 Score=58.68 Aligned_cols=139 Identities=17% Similarity=0.183 Sum_probs=78.5
Q ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006640 386 PDAHAYSILAKGYVR-----EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKT 460 (637)
Q Consensus 386 ~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 460 (637)
.+..+|..+++.|.+ .|..+=....++.|.+.|+..|..+|+.|+..+=+ |.+- -..+|+.+-
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F---------- 112 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF---------- 112 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh----------
Confidence 455666666666643 24555555555666666666666666666654432 2211 011111111
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHhhc---ccc----ccccccc
Q 006640 461 FETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLT-KEAKRILSKIKNK---ERT----NEMEAEE 532 (637)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~-~eA~~~~~~~~~~---~~~----~~~~~~~ 532 (637)
.-| -.+.+-|++++++|..+|+-||.+++..+++++++.+.. ....+++--|+.- +|. ..+....
T Consensus 113 -----~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpkfk~~nP~plp~~lP~Dp~ 185 (228)
T PF06239_consen 113 -----MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPKFKNINPWPLPRPLPQDPL 185 (228)
T ss_pred -----ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhccCCCCCCcCCCCCHH
Confidence 001 123456899999999999999999999999999877642 2333333223222 221 1234556
Q ss_pred cchHHHHHHHH
Q 006640 533 DIPVESLERLY 543 (637)
Q Consensus 533 ~~a~~~~e~l~ 543 (637)
++|..+++++-
T Consensus 186 eLA~lal~rm~ 196 (228)
T PF06239_consen 186 ELAKLALRRMS 196 (228)
T ss_pred HHHHHHHHHhc
Confidence 77877787774
No 151
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.73 E-value=0.00036 Score=64.36 Aligned_cols=97 Identities=13% Similarity=0.215 Sum_probs=70.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCh
Q 006640 396 KGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK-TFETLMWGYSEARQP 474 (637)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~ 474 (637)
.-..+.+++++|+..|.+.++.. +.|.+.|..-..+|.+.|.++.|++-.+..+.. .|... +|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcH
Confidence 34566777888888888877764 567777777777788888888888777777763 34433 777777788888888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHH
Q 006640 475 WRAEEILQIMKAFGVHPQKSTFL 497 (637)
Q Consensus 475 ~~A~~~~~~m~~~g~~p~~~~~~ 497 (637)
++|++.|++..+ +.|+.++|.
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHH
Confidence 888887777666 777777554
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.73 E-value=0.00089 Score=55.05 Aligned_cols=95 Identities=15% Similarity=0.064 Sum_probs=39.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-C-CHHHHHHHHHHH
Q 006640 428 TIISGWCSDGSMDRAIEVFDKMCEHGVS--PNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVH-P-QKSTFLLLAEAR 503 (637)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~l~~~~ 503 (637)
.++..+...|++++|...|+++...... .....+..+..++...|++++|...|+.+...... | ....+..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3334444444444444444444432110 00123333444444555555555555444331100 0 122344444444
Q ss_pred HHcCCHHHHHHHHHHHhhc
Q 006640 504 RATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 504 ~~~g~~~eA~~~~~~~~~~ 522 (637)
...|+.++|...++++...
T Consensus 87 ~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 4555555555555444433
No 153
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.73 E-value=0.00064 Score=62.75 Aligned_cols=96 Identities=15% Similarity=0.172 Sum_probs=55.2
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006640 363 WSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRA 442 (637)
Q Consensus 363 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 442 (637)
..+.+++++|+..|.+.++.. +.|.+-|..-..+|.+.|.++.|++-.+..+..+ +--..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 344556666666666666553 3355555555666666666666666666655542 22334566666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHH
Q 006640 443 IEVFDKMCEHGVSPNLKTFE 462 (637)
Q Consensus 443 ~~~~~~m~~~~~~p~~~~~~ 462 (637)
++.|++.++ +.|+-.+|-
T Consensus 169 ~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHhhhc--cCCCcHHHH
Confidence 666666665 345544443
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.72 E-value=0.0011 Score=66.16 Aligned_cols=88 Identities=9% Similarity=-0.029 Sum_probs=47.3
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006640 362 AWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDR 441 (637)
Q Consensus 362 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 441 (637)
.+...|+++.|+..|+++++.. +.+...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 3444555555555555555543 2244555555555555555555555555555543 3344555555555555555555
Q ss_pred HHHHHHHHHH
Q 006640 442 AIEVFDKMCE 451 (637)
Q Consensus 442 A~~~~~~m~~ 451 (637)
|+..|++.++
T Consensus 89 A~~~~~~al~ 98 (356)
T PLN03088 89 AKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHH
Confidence 5555555555
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.71 E-value=0.00082 Score=52.29 Aligned_cols=95 Identities=21% Similarity=0.239 Sum_probs=68.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006640 356 YSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS 435 (637)
Q Consensus 356 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 435 (637)
+..+...+...|++++|...++.+.+.. +.+..++..+...+...+++++|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3445566677788888888888777653 2344667777777788888888888888877654 4455677777788888
Q ss_pred cCCHHHHHHHHHHHHHC
Q 006640 436 DGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 436 ~g~~~~A~~~~~~m~~~ 452 (637)
.|++++|...+++..+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 88888888888777653
No 156
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.62 E-value=0.081 Score=51.86 Aligned_cols=435 Identities=10% Similarity=0.089 Sum_probs=217.3
Q ss_pred cccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 006640 66 KESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFF 145 (637)
Q Consensus 66 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 145 (637)
...+.|+.+|-.|+.-|-.+|.+++.++++++|..- .+--..+|..-+++-...+++.....+|.+.+... .+...|
T Consensus 36 kdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW 112 (660)
T COG5107 36 KDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLW 112 (660)
T ss_pred hcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHH
Confidence 356789999999999999999999999999999752 22244577777887777889999999999998764 456677
Q ss_pred HHHHHHHHhcCCH------HHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHH---------hcCChHHHHHHHHHHHhcCC
Q 006640 146 NAVINAFSESGNM------EEAMDTFWKMKE-SGLTPT-TSTYNTLIKGYG---------IAGKPEESVKLLDLMSREGN 208 (637)
Q Consensus 146 ~~li~~~~~~g~~------~~A~~~~~~m~~-~~~~~~-~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~~~ 208 (637)
..-+..--+.... ..-.++|+-... .++.|- ...|+..+..+- .+.+++..+..+.++....
T Consensus 113 ~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP- 191 (660)
T COG5107 113 MLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTP- 191 (660)
T ss_pred HHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCc-
Confidence 7666544443311 122334444333 234333 234555444332 2335566677777776531
Q ss_pred CCCC-HHHHHH------HHHH-----HHh--cCCHHHHHHHHHHHHH--CCCC----CCHHHHH-----------HHHHH
Q 006640 209 VKPN-LRTYNV------LVRA-----WCN--EKNITEAWNVMHKMAA--SGMK----PDVVTYN-----------TIATA 257 (637)
Q Consensus 209 ~~~~-~~~~~~------li~~-----~~~--~g~~~~A~~~~~~~~~--~g~~----~~~~~~~-----------~li~~ 257 (637)
-.+ ...|+- =+.. ++. .--+..|...++++.. .|.. .+..+++ ..|..
T Consensus 192 -~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkw 270 (660)
T COG5107 192 -MGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKW 270 (660)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhH
Confidence 011 112211 1111 110 1113345555555432 2221 1122222 22222
Q ss_pred HHHc-----CC-H-HHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH
Q 006640 258 YAQN-----GE-A-DQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLI-KGFV 329 (637)
Q Consensus 258 ~~~~-----g~-~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll-~~~~ 329 (637)
-... |+ . ....-+|++.... +.....+|----..+...++-+.|++........ .|+ .+..+ ..|.
T Consensus 271 E~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps---L~~~lse~ye 344 (660)
T COG5107 271 EMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS---LTMFLSEYYE 344 (660)
T ss_pred hhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc---hheeHHHHHh
Confidence 1111 11 1 1222234443332 1233444544444555667777777665544322 222 22222 2222
Q ss_pred HcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006640 330 EIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWST---AGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEK 406 (637)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 406 (637)
-..+.+.....|+..... ...--..+.+=+. -|+++.-.+++-.-. ..-..+|..+++.-.+..-++.
T Consensus 345 l~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~----~k~t~v~C~~~N~v~r~~Gl~a 415 (660)
T COG5107 345 LVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKRI----NKLTFVFCVHLNYVLRKRGLEA 415 (660)
T ss_pred hcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHHH----hhhhhHHHHHHHHHHHHhhHHH
Confidence 233333333333322110 0000000000000 122322222111111 1234455666666666666677
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHH
Q 006640 407 AEELLMTMIESG-FHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTF-ETLMWGYSEARQPWRAEEILQIM 484 (637)
Q Consensus 407 A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~m 484 (637)
|..+|-+..+.+ +.+++.++++++.-++ .|+...|..+|+--... -||...| .-.+.-+..-++-..|..+|+..
T Consensus 416 aR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFets 492 (660)
T COG5107 416 ARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETS 492 (660)
T ss_pred HHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 777777777665 4556666666666443 45666777777655443 2343333 23444555666666777777644
Q ss_pred HHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc
Q 006640 485 KAFGVHPQ--KSTFLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 485 ~~~g~~p~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
... +..+ ..+|..+++--..-|++..+..+=+++.+..|
T Consensus 493 v~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 493 VER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 311 1112 34677777777777777777766666665544
No 157
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.60 E-value=0.0045 Score=54.80 Aligned_cols=88 Identities=15% Similarity=0.109 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006640 354 ITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD--AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIIS 431 (637)
Q Consensus 354 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 431 (637)
..+..+...+...|++++|...|++..+....+. ...+..+...|.+.|++++|...+.+..+.. +.+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3455555566666677777776666655322221 3456666666667777777777776666542 334555555666
Q ss_pred HHHhcCCHHHH
Q 006640 432 GWCSDGSMDRA 442 (637)
Q Consensus 432 ~~~~~g~~~~A 442 (637)
.+...|+...+
T Consensus 115 ~~~~~g~~~~a 125 (172)
T PRK02603 115 IYHKRGEKAEE 125 (172)
T ss_pred HHHHcCChHhH
Confidence 66665554333
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.59 E-value=0.0043 Score=54.91 Aligned_cols=87 Identities=17% Similarity=0.172 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006640 387 DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPN--VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETL 464 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 464 (637)
....+..+...|...|++++|...|++..+....+. ...+..+...+.+.|++++|+..++++.+.... +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 345677788888899999999999999886532222 467888899999999999999999999885322 45567777
Q ss_pred HHHHHhcCCh
Q 006640 465 MWGYSEARQP 474 (637)
Q Consensus 465 ~~~~~~~g~~ 474 (637)
..++...|+.
T Consensus 113 g~~~~~~g~~ 122 (172)
T PRK02603 113 AVIYHKRGEK 122 (172)
T ss_pred HHHHHHcCCh
Confidence 7788777764
No 159
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.59 E-value=0.0013 Score=63.11 Aligned_cols=129 Identities=10% Similarity=0.142 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006640 355 TYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVR-EQEPEKAEELLMTMIESGFHPNVVIFTTIISGW 433 (637)
Q Consensus 355 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 433 (637)
+|..++....+.+..+.|+.+|.+..+.+ ..+..+|...+.+-.. .++.+.|.++|+...+. ++.+...|...+.-+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45556666666666666666666665432 2234445444444333 44455567777666654 455666666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 434 CSDGSMDRAIEVFDKMCEHGVSPNL---KTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
...|+.+.|..+|++.... +.++. ..|...+..=.+.|+.+....+.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666777777777666653 22222 2566666666666666666666666654
No 160
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.59 E-value=0.0033 Score=51.60 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=8.5
Q ss_pred HHHHHHcCChhHHHHHHHHHH
Q 006640 79 MNSLIERGKPQEAQAIFNNLI 99 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~ 99 (637)
+..+.+.|++++|...|+.+.
T Consensus 9 ~~~~~~~~~~~~A~~~~~~~~ 29 (119)
T TIGR02795 9 ALLVLKAGDYADAIQAFQAFL 29 (119)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 333334444444444444433
No 161
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.58 E-value=0.0013 Score=65.62 Aligned_cols=124 Identities=14% Similarity=0.134 Sum_probs=88.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 006640 313 GVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEF--RVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHA 390 (637)
Q Consensus 313 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 390 (637)
+.+.+......+++.+....+.+.+..++-..... ....-..|..++++.|...|..+.++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556667777777777777777777777776554 2222234455788888888888888888888778888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006640 391 YSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSD 436 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 436 (637)
++.|++.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888877666566666666555555544
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.58 E-value=0.0024 Score=63.80 Aligned_cols=96 Identities=15% Similarity=0.077 Sum_probs=58.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 006640 396 KGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPW 475 (637)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 475 (637)
..+...|++++|+..|+++++.. +.+...|..+..+|...|++++|+..++++++... .+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHH
Confidence 44455666666666666666653 44556666666666666666666666666666432 14445666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHH
Q 006640 476 RAEEILQIMKAFGVHPQKST 495 (637)
Q Consensus 476 ~A~~~~~~m~~~g~~p~~~~ 495 (637)
+|+..|++..+ +.|+...
T Consensus 88 eA~~~~~~al~--l~P~~~~ 105 (356)
T PLN03088 88 TAKAALEKGAS--LAPGDSR 105 (356)
T ss_pred HHHHHHHHHHH--hCCCCHH
Confidence 66666666655 3444433
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.58 E-value=0.0001 Score=56.31 Aligned_cols=80 Identities=28% Similarity=0.326 Sum_probs=38.9
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHH
Q 006640 436 DGSMDRAIEVFDKMCEHGVS-PNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK-STFLLLAEARRATGLTKEAK 513 (637)
Q Consensus 436 ~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~ 513 (637)
.|+++.|+.+|+++.+.... |+...+..+..+|.+.|++++|..++++ .+ ..|+. .....++.++...|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 35556666666666553221 1233344455566666666666666655 22 22222 22223355566666666666
Q ss_pred HHHHH
Q 006640 514 RILSK 518 (637)
Q Consensus 514 ~~~~~ 518 (637)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 65554
No 164
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.56 E-value=0.0053 Score=64.09 Aligned_cols=143 Identities=11% Similarity=0.076 Sum_probs=77.4
Q ss_pred CCCCHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHH
Q 006640 349 VNPDVITYSTIMNAWSTAG-----FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVRE--------QEPEKAEELLMTMI 415 (637)
Q Consensus 349 ~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~ 415 (637)
.+.+...|...+.+..... ..+.|+.+|++.++.. +.....+..+..+|... .++..+.+...+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3456666666666544322 2556777777776653 12234444433333221 11223333333333
Q ss_pred HC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 006640 416 ES-GFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS 494 (637)
Q Consensus 416 ~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 494 (637)
.. ..+.+...|..+.......|++++|...++++.+.+ |+...|..+...+...|+.++|.+.+++... +.|...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCc
Confidence 22 123445566666555556677777777777776643 5666666777777777777777777766655 445444
Q ss_pred HH
Q 006640 495 TF 496 (637)
Q Consensus 495 ~~ 496 (637)
+|
T Consensus 488 t~ 489 (517)
T PRK10153 488 TL 489 (517)
T ss_pred hH
Confidence 43
No 165
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.53 E-value=0.0029 Score=53.33 Aligned_cols=99 Identities=9% Similarity=-0.096 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006640 423 VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEA 502 (637)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 502 (637)
....-.+..-+...|++++|..+|+-+....+. +..-|..|..+|-..|++.+|+..|.......+. +...+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 344556666788999999999999999886532 5667889999999999999999999998874432 45678889999
Q ss_pred HHHcCCHHHHHHHHHHHhhcc
Q 006640 503 RRATGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 503 ~~~~g~~~eA~~~~~~~~~~~ 523 (637)
+...|+.++|++.|+......
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999987663
No 166
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.51 E-value=0.015 Score=56.12 Aligned_cols=175 Identities=11% Similarity=0.117 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 006640 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEG----GHKP-SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
...|....+.|-..|++++|...|.+.... +.+. -...|.....++. ..++++|...+.+
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~~~~-------------- 99 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAIECYEK-------------- 99 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHHHHHHH--------------
Confidence 445666677777777777777777665431 1000 0111222222221 2244444333333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhc----CCCCCCHHHHHHHHH
Q 006640 147 AVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIA-GKPEESVKLLDLMSRE----GNVKPNLRTYNVLVR 221 (637)
Q Consensus 147 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----~~~~~~~~~~~~li~ 221 (637)
.+..|...|++..|-+++..+ ...|... |++++|++.|.+.... +....-..++..+..
T Consensus 100 -A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 100 -AIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD 163 (282)
T ss_dssp -HHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred -HHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence 334455566655555444443 3344444 6677777766665432 100001234455666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006640 222 AWCNEKNITEAWNVMHKMAASGMKP-----DVV-TYNTIATAYAQNGEADQAEEVIVEMEHN 277 (637)
Q Consensus 222 ~~~~~g~~~~A~~~~~~~~~~g~~~-----~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~ 277 (637)
.+.+.|++++|.++|++....-... +.. .+...+-++...|++..|.+.+++....
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6677777777777777665432211 111 1222333555566777777777666543
No 167
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.51 E-value=0.00011 Score=43.51 Aligned_cols=29 Identities=45% Similarity=0.968 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006640 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHG 453 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 453 (637)
+|++++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555554443
No 168
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.49 E-value=0.0017 Score=64.85 Aligned_cols=124 Identities=10% Similarity=0.106 Sum_probs=101.8
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHH
Q 006640 278 GVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYG--VHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVIT 355 (637)
Q Consensus 278 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 355 (637)
+.+.+......+++.+....+++++..++.+..... ...-..|..+++..|.+.|..+.++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 334566677778888888888999999998887652 222344667999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006640 356 YSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVRE 401 (637)
Q Consensus 356 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 401 (637)
++.|++.+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999988877667777777666666665
No 169
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.49 E-value=0.0035 Score=60.26 Aligned_cols=43 Identities=7% Similarity=0.093 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006640 196 SVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMA 240 (637)
Q Consensus 196 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 240 (637)
|..+|+...+. ++.+...|...+..+...++.+.|..+|++..
T Consensus 55 A~~Ife~glk~--f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i 97 (280)
T PF05843_consen 55 ARKIFERGLKK--FPSDPDFWLEYLDFLIKLNDINNARALFERAI 97 (280)
T ss_dssp HHHHHHHHHHH--HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHH--CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 44444444433 23334444444444444444444444444443
No 170
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.013 Score=56.58 Aligned_cols=275 Identities=12% Similarity=0.002 Sum_probs=132.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 006640 219 LVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGK 298 (637)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 298 (637)
....+.+..++.+|+..+...++.... +..-|..-+..+...|++++|.--.+.-.+... .........-.++...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd-~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKD-GFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCC-CccccccchhhhhhhhHH
Confidence 445566666677777777666665322 233344444445555666665544443332210 011223333344444444
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhC-CCCCCHHHHHHHH-HHHHHcCChHHHHHHH
Q 006640 299 IKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEF-RVNPDVITYSTIM-NAWSTAGFMDKCKEIF 376 (637)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li-~~~~~~g~~~~a~~~~ 376 (637)
..+|...++.-. .+ ....++..++.+... .-+|...++..+- ..+.-.|+.+.|.++-
T Consensus 133 ~i~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 133 LIEAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred HHHHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 444444443110 00 001111111111111 1112233333332 2344566677776666
Q ss_pred HHHHHCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCCCHHH-------------HHHHHHHHHhcCCHHH
Q 006640 377 DDMGKAGIKPDAHAYSILAKG--YVREQEPEKAEELLMTMIESGFHPNVVI-------------FTTIISGWCSDGSMDR 441 (637)
Q Consensus 377 ~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------------~~~li~~~~~~g~~~~ 441 (637)
..+.+.. ....+..++++ +--.++.+.|...|++.++. .|+... |..=..-..+.|++..
T Consensus 193 ~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~ 267 (486)
T KOG0550|consen 193 IDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRK 267 (486)
T ss_pred HHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhH
Confidence 6665542 11222222222 23456666677777666654 233321 1111223446677777
Q ss_pred HHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHH
Q 006640 442 AIEVFDKMCEH---GVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK-STFLLLAEARRATGLTKEAKRILS 517 (637)
Q Consensus 442 A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~eA~~~~~ 517 (637)
|.+.|.+.+.. ...|+...|.....+..+.|+.++|+.--++..+ +.|.- ..|..-..++...++|++|.+-++
T Consensus 268 A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 268 AYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred HHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777653 3344555666666667777777777776665544 33321 133333445555677777777777
Q ss_pred HHhhc
Q 006640 518 KIKNK 522 (637)
Q Consensus 518 ~~~~~ 522 (637)
++...
T Consensus 346 ~a~q~ 350 (486)
T KOG0550|consen 346 KAMQL 350 (486)
T ss_pred HHHhh
Confidence 76543
No 171
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.46 E-value=0.0026 Score=56.10 Aligned_cols=94 Identities=17% Similarity=0.076 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 388 AHAYSILAKGYVREQEPEKAEELLMTMIESGFHP--NVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLM 465 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 465 (637)
...+..++..+...|++++|...|++.......+ ...+|..+...+...|++++|+..+++..+... ....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHH
Confidence 3445556666666777777777777766542111 124666677777777777777777777765421 1233455555
Q ss_pred HHHH-------hcCChhHHHHHHH
Q 006640 466 WGYS-------EARQPWRAEEILQ 482 (637)
Q Consensus 466 ~~~~-------~~g~~~~A~~~~~ 482 (637)
..+. ..|++++|...++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 5555 5555554444443
No 172
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.46 E-value=0.0022 Score=50.04 Aligned_cols=78 Identities=17% Similarity=0.371 Sum_probs=52.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHHHcCCCCCHHHH
Q 006640 75 MTKLMNSLIERGKPQEAQAIFNNLIEGGH-KPSLVTYTTLLAALTIQK--------RFNSIHSIMSQVEENGMDPDSIFF 145 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 145 (637)
-...|..+...+++..-..+|+.+.+.|+ .|++.+|+.++.+.++.. +.-..+.+|+.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456677777899999999999998888 889999999888776542 123344455555555555555555
Q ss_pred HHHHHHH
Q 006640 146 NAVINAF 152 (637)
Q Consensus 146 ~~li~~~ 152 (637)
+.++..+
T Consensus 108 nivl~~L 114 (120)
T PF08579_consen 108 NIVLGSL 114 (120)
T ss_pred HHHHHHH
Confidence 5555444
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.45 E-value=0.0037 Score=55.13 Aligned_cols=96 Identities=15% Similarity=0.067 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 353 VITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKP--DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTII 430 (637)
Q Consensus 353 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 430 (637)
...+..+...+...|++++|...|+........+ ...++..+...|...|++++|+..+++..+.. +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4456667777778888888888888887653222 23577888888888899999999888888753 44456666666
Q ss_pred HHHH-------hcCCHHHHHHHHHHH
Q 006640 431 SGWC-------SDGSMDRAIEVFDKM 449 (637)
Q Consensus 431 ~~~~-------~~g~~~~A~~~~~~m 449 (637)
..+. ..|++++|+..+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 6666 667777555555443
No 174
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.44 E-value=0.19 Score=51.99 Aligned_cols=202 Identities=12% Similarity=0.109 Sum_probs=127.5
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHH----------HHHHhcCChhHHHHHHHHHHHcCCC
Q 006640 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLL----------AALTIQKRFNSIHSIMSQVEENGMD 139 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll----------~~~~~~~~~~~a~~~~~~~~~~~~~ 139 (637)
|.+..|..|.......-.++-|...|-+... -|.+.....|- ..-+-.|++++|.++|-.|.+++
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh--
Confidence 5567787777777766677777776665532 22222111111 11223478999999988776543
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHH
Q 006640 140 PDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPT----TSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRT 215 (637)
Q Consensus 140 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 215 (637)
..|..+.+.|++-...++++. -|...| ..+|+.+...++....+++|.+.|..-...
T Consensus 765 -------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------- 825 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------- 825 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------
Confidence 245667778888766665543 111112 346888888888888888888888754321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH
Q 006640 216 YNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCK 295 (637)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 295 (637)
...+.++.+..++++-+.+-..+ +-|....-.+..++...|.-++|.+.|-+. +. | -..+..|..
T Consensus 826 -e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~ 890 (1189)
T KOG2041|consen 826 -ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVE 890 (1189)
T ss_pred -HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHH
Confidence 23455666666666655554444 345667777889999999999998887443 21 2 234567788
Q ss_pred cCCHHHHHHHHHHHH
Q 006640 296 EGKIKEALRFARTMK 310 (637)
Q Consensus 296 ~g~~~~A~~~~~~~~ 310 (637)
.+++.+|.++-+...
T Consensus 891 LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 891 LNQWGEAVELAQRFQ 905 (1189)
T ss_pred HHHHHHHHHHHHhcc
Confidence 888888888766543
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.44 E-value=0.01 Score=61.98 Aligned_cols=140 Identities=12% Similarity=0.048 Sum_probs=100.3
Q ss_pred CCCCCCHHHHHHHHHHHHH--cC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHH
Q 006640 382 AGIKPDAHAYSILAKGYVR--EQ---EPEKAEELLMTMIESGFHPNVVIFTTIISGWCSD--------GSMDRAIEVFDK 448 (637)
Q Consensus 382 ~~~~~~~~~~~~l~~~~~~--~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~ 448 (637)
...+.+...|...+.+... .+ ..+.|..+|++.++.. |.....|..+..++... ++...+.+..++
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3446788889888887543 33 3778999999999874 44455666555544332 123344455555
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc
Q 006640 449 MCEH-GVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 449 m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
.... ....+...|..+.......|++++|...++++.+ +.|+...|..++.++...|+.++|.+.++++....|
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 4443 1334567788887777778999999999999988 557888999999999999999999999888765544
No 176
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.12 Score=50.21 Aligned_cols=64 Identities=14% Similarity=0.075 Sum_probs=41.2
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 71 TVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEE 135 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 135 (637)
.........+.+.+..++.+|+..+...++.. +.++.-|..-+..+...+++++++--.++-++
T Consensus 48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r 111 (486)
T KOG0550|consen 48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVR 111 (486)
T ss_pred HHHHHHhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhhee
Confidence 34444455667777788888888888888753 23455566666666677777776665554443
No 177
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.41 E-value=0.0003 Score=53.68 Aligned_cols=81 Identities=15% Similarity=0.213 Sum_probs=39.7
Q ss_pred cCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006640 85 RGKPQEAQAIFNNLIEGGHK-PSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMD 163 (637)
Q Consensus 85 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 163 (637)
+|+++.|+.+|+++.+.... ++...+..+..++.+.|++++|..++++ .+.+ +.+....-.+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45666666666666653221 1233344455666666666666666655 2221 1222333344555556666666666
Q ss_pred HHHH
Q 006640 164 TFWK 167 (637)
Q Consensus 164 ~~~~ 167 (637)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 178
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.40 E-value=0.0002 Score=42.43 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006640 73 RSMTKLMNSLIERGKPQEAQAIFNNLIEGG 102 (637)
Q Consensus 73 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 102 (637)
++||.++++|++.|++++|.++|++|.+.|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 357777777777777777777777777654
No 179
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.33 E-value=0.072 Score=45.76 Aligned_cols=130 Identities=12% Similarity=0.076 Sum_probs=73.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHH
Q 006640 385 KPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVS-PNLKTFET 463 (637)
Q Consensus 385 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ 463 (637)
.|+...-..|..+..+.|+..+|...|.+...--+..|....-.+..+....+++..|...++++.+.... -.+.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 35555555666666666666666666666665444556666666666666666666666666666654210 01223444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006640 464 LMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~ 516 (637)
+.+.+...|+..+|...|+.... .-|+...-......+...|+.++|..-+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 55666666666666666666655 3344443333334445566555554433
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.32 E-value=0.085 Score=45.33 Aligned_cols=127 Identities=16% Similarity=0.097 Sum_probs=75.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHH
Q 006640 175 PTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMK-PDVVTYNT 253 (637)
Q Consensus 175 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~~~~~~~~ 253 (637)
|++..-..|..+....|+..+|...|.+... |.+..|......+.++....+++..|...++.+.+.... .++.+...
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4555556666666777777777777766653 334556666666666666777777777777666553210 11223344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 006640 254 IATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALR 304 (637)
Q Consensus 254 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 304 (637)
+.+.+...|.+..|+..|+..... -|+...-......+.+.|+.+++..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 566677777777777777776654 2444433334455666666655544
No 181
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.29 E-value=0.0059 Score=47.67 Aligned_cols=79 Identities=15% Similarity=0.344 Sum_probs=57.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHH
Q 006640 111 TTLLAALTIQKRFNSIHSIMSQVEENGM-DPDSIFFNAVINAFSESG--------NMEEAMDTFWKMKESGLTPTTSTYN 181 (637)
Q Consensus 111 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~~~~~~~~ 181 (637)
...|..+...+++...-.+|+.+.+.|+ -|+..+|+.++.+.++.. .+-..+.+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456666677888888888888888888 788888888888777653 2345566777777777777777777
Q ss_pred HHHHHHHh
Q 006640 182 TLIKGYGI 189 (637)
Q Consensus 182 ~li~~~~~ 189 (637)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 77766543
No 182
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.29 E-value=0.064 Score=51.79 Aligned_cols=111 Identities=20% Similarity=0.174 Sum_probs=54.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHH
Q 006640 184 IKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNE-KNITEAWNVMHKMAAS----GMKPD--VVTYNTIAT 256 (637)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~----g~~~~--~~~~~~li~ 256 (637)
+..|...|++..|-+.+..+ ...|... |++++|++.|++..+. | .+. ..++..+..
T Consensus 101 ~~~y~~~G~~~~aA~~~~~l----------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKEL----------------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHH----------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHH
Confidence 34455555555555544443 3344455 6777777777766532 1 111 234445666
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCh-----h-hHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 257 AYAQNGEADQAEEVIVEMEHNGVQPNG-----R-TCGIIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 257 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~-~~~~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
.+.+.|++++|.++|+++.......+. . .+...+-++...|++..|.+.+++...
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 667777777777777766554322111 1 112223344445666666666666543
No 183
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.24 E-value=0.084 Score=49.46 Aligned_cols=55 Identities=9% Similarity=0.199 Sum_probs=29.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006640 429 IISGWCSDGSMDRAIEVFDKMCEH--GVSPNLKTFETLMWGYSEARQPWRAEEILQI 483 (637)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 483 (637)
+..-|.+.|.+..|+.-|+.+.+. +.+........++.+|...|..++|......
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 334455566666666666666543 2222333455555666666666666555443
No 184
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.019 Score=53.64 Aligned_cols=98 Identities=13% Similarity=0.154 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006640 387 DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDG---SMDRAIEVFDKMCEHGVSPNLKTFET 463 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~ 463 (637)
|...|..|...|...|+++.|..-|.+..+.. ++++..+..+..++.... ...++..+|+++...+.. |..+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 44555555555555555555555555554442 344444444444333221 233444555555443211 2333444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 006640 464 LMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
|...+...|++.+|...|+.|.+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHh
Confidence 44444555555555555555543
No 185
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.21 E-value=0.0015 Score=46.81 Aligned_cols=55 Identities=11% Similarity=0.175 Sum_probs=27.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006640 396 KGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
..+.+.|++++|...|+++++.. +.+...|..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555555555442 33444555555555555555555555555544
No 186
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.20 E-value=0.0015 Score=46.83 Aligned_cols=56 Identities=14% Similarity=0.080 Sum_probs=33.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 430 ISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
...+...|++++|+..|+++++..+. +...+..+..++...|++++|..+|+++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555666666666666666654311 444566666666666666666666666654
No 187
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.18 E-value=0.21 Score=46.85 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=34.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006640 253 TIATAYAQNGEADQAEEVIVEMEHN--GVQPNGRTCGIIISGYCKEGKIKEALRFARTMK 310 (637)
Q Consensus 253 ~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 310 (637)
.+.+.|.+.|.+..|..-++.+++. +.+........++.+|.+.|..++|......+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3555666667777777777666653 112233445556667777777777766655443
No 188
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.18 E-value=0.0016 Score=47.38 Aligned_cols=59 Identities=20% Similarity=0.217 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHH
Q 006640 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEAR-QPWRAEEILQIM 484 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m 484 (637)
+|..+...+...|++++|+..|++.++.... +...|..+..++...| ++++|++.+++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 3444444444444444444444444443211 2223444444444444 344444444443
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.17 E-value=0.031 Score=45.44 Aligned_cols=54 Identities=15% Similarity=0.143 Sum_probs=22.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006640 397 GYVREQEPEKAEELLMTMIESGFHPN--VVIFTTIISGWCSDGSMDRAIEVFDKMC 450 (637)
Q Consensus 397 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (637)
++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|+.+|++..
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33344444444444444444432222 1233334444444444444444444444
No 190
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.16 E-value=0.0019 Score=47.01 Aligned_cols=65 Identities=25% Similarity=0.294 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHC
Q 006640 387 DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDG-SMDRAIEVFDKMCEH 452 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~ 452 (637)
+..+|..+...+...|++++|+..|.+.++.. +.+...|..+..+|...| ++++|++.|++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45677777888888888888888888887764 556777888888888888 688888888877763
No 191
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.12 E-value=0.014 Score=51.75 Aligned_cols=87 Identities=18% Similarity=0.349 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------------CHHHHHH
Q 006640 105 PSLVTYTTLLAALTI-----QKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESG----------------NMEEAMD 163 (637)
Q Consensus 105 ~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------~~~~A~~ 163 (637)
.+-.+|..++..+.+ .|..+-....+..|.+.|+..|..+|+.|++.+=+.. +.+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 456666666666653 3556666667777777777777777777777654311 2344566
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006640 164 TFWKMKESGLTPTTSTYNTLIKGYGIAG 191 (637)
Q Consensus 164 ~~~~m~~~~~~~~~~~~~~li~~~~~~g 191 (637)
++++|...|+-||..++..++..+.+.+
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 6666666666666666666666654444
No 192
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.035 Score=51.85 Aligned_cols=99 Identities=13% Similarity=0.114 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006640 176 TTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNE---KNITEAWNVMHKMAASGMKPDVVTYN 252 (637)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~g~~~~~~~~~ 252 (637)
|...|-.|...|...|+.+.|..-|....+.. ++|...+..+..++... ....++..+|+++++.+ +-|..+..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 55566666666666666666666666665543 34455555555444322 23345566666665543 22444555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC
Q 006640 253 TIATAYAQNGEADQAEEVIVEMEHN 277 (637)
Q Consensus 253 ~li~~~~~~g~~~~A~~~~~~~~~~ 277 (637)
.|...+...|++.+|...|+.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 5555666666666666666666654
No 193
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.073 Score=48.37 Aligned_cols=132 Identities=11% Similarity=0.036 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHH-----H
Q 006640 144 FFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYN-----V 218 (637)
Q Consensus 144 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-----~ 218 (637)
+.+.++..+.-.+.+.-...++.+.++...+.++.....|.+.-.+.|+.+.|...|++..+..+ +.|..+.+ .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhh
Confidence 34444445555555555555555555555444555555555555556666666555554443221 12222222 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006640 219 LVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHN 277 (637)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 277 (637)
....|.-.+++..|...+.+....+ +.|+...|.-.-+..-.|+...|.+..+.|...
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2233444555555555555555443 223333333333333345566666666665554
No 194
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.07 E-value=0.34 Score=47.28 Aligned_cols=281 Identities=16% Similarity=0.185 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006640 74 SMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFS 153 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 153 (637)
+|..+...-.+.|+.+-|..+++. .|++.- =+..+...|+.+.| +.+..+.| .||.. |..|+..--
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~------Ep~~~~---qVplLL~m~e~e~A---L~kAi~Sg-D~DLi-~~vLl~L~~ 67 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLEL------EPRASK---QVPLLLKMGEDELA---LNKAIESG-DTDLI-YLVLLHLKR 67 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHc------CCChHH---HHHHHhcCCchHHH---HHHHHHcC-CccHH-HHHHHHHHH
Confidence 577788888899999999887763 344322 23445566666666 45677776 55543 444443322
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006640 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAW 233 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 233 (637)
+.. .. +++ .+.... |.. ..+...|++..+.+.-..+|.+--+ ........+-.++.. .+.+.-.
T Consensus 68 ~l~-~s---~f~-~il~~~--p~a---~~l~~~~~r~~~~~~L~~~y~q~d~-----~~~~a~~~l~~~~~~-~~~~~~~ 131 (319)
T PF04840_consen 68 KLS-LS---QFF-KILNQN--PVA---SNLYKKYCREQDRELLKDFYYQEDR-----FQELANLHLQEALSQ-KDVEEKI 131 (319)
T ss_pred hCC-HH---HHH-HHHHhC--cch---HHHHHHHHHhccHHHHHHHHHhcch-----HHHHHHHHHHHHHhC-CChHHHH
Confidence 222 21 233 333221 221 2344455565555554444432111 011111112222211 3333322
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH---HH-HCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 006640 234 NVMHKMAAS-GMKPDVVTYNTIATAYAQNGEADQAEEVIVE---ME-HNGVQPNGRTCGIIISGYCKEGKIKEALRFART 308 (637)
Q Consensus 234 ~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 308 (637)
..+....+. +-..+......++ ++..++++. +. ..+......+.+..+.-+...|+...|.++..+
T Consensus 132 ~~L~~a~~~y~~~k~~~f~~~~~---------e~q~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~ 202 (319)
T PF04840_consen 132 SFLKQAQKLYSKSKNDAFEAKLI---------EEQIKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKE 202 (319)
T ss_pred HHHHHHHHHHHhcchhHHHHHHH---------HHHHHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHH
Confidence 222222210 0001111111111 111122111 10 011112233455556667777888877777666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 006640 309 MKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA 388 (637)
Q Consensus 309 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 388 (637)
.. .|+..-|...+.+++..++|++...+-.. ..+++.|..++.+|.+.|...+|..+...+ +
T Consensus 203 Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI~k~-----~--- 264 (319)
T PF04840_consen 203 FK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYIPKI-----P--- 264 (319)
T ss_pred cC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHHHhC-----C---
Confidence 64 57778888888888888888776654321 123466777888888888888887776652 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 006640 389 HAYSILAKGYVREQEPEKAEELLMT 413 (637)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~ 413 (637)
+..-+.+|.++|++.+|.+.-.+
T Consensus 265 --~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 265 --DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred --hHHHHHHHHHCCCHHHHHHHHHH
Confidence 24556778888888887665443
No 195
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.04 E-value=0.0026 Score=46.08 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006640 156 GNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSR 205 (637)
Q Consensus 156 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 205 (637)
|++++|+..|+++.+..+. +...+..++.+|.+.|++++|.++++++..
T Consensus 5 ~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp THHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred cCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444333222 333333444444444444444444444433
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.02 E-value=0.06 Score=43.78 Aligned_cols=91 Identities=14% Similarity=0.164 Sum_probs=49.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHH
Q 006640 78 LMNSLIERGKPQEAQAIFNNLIEGGHKPS--LVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDP---DSIFFNAVINAF 152 (637)
Q Consensus 78 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~ 152 (637)
+..++-..|+.++|+.+|++.+..|.... ...+-.+...+...|++++|..+++...... +. +......+..++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 34455566777777777777776654332 2244445566666677777777666665532 11 122222233345
Q ss_pred HhcCCHHHHHHHHHHHH
Q 006640 153 SESGNMEEAMDTFWKMK 169 (637)
Q Consensus 153 ~~~g~~~~A~~~~~~m~ 169 (637)
...|+.++|+..+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 55666666666555443
No 197
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.00 E-value=0.0027 Score=45.99 Aligned_cols=50 Identities=18% Similarity=0.267 Sum_probs=20.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006640 401 EQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 401 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
.|++++|+++|+++.... |.+...+..+..+|.+.|++++|..+++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444443332 22333444444444444444444444444443
No 198
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.99 E-value=0.024 Score=53.51 Aligned_cols=91 Identities=13% Similarity=0.065 Sum_probs=46.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHHHcCCH
Q 006640 434 CSDGSMDRAIEVFDKMCEHGVSPN--LKTFETLMWGYSEARQPWRAEEILQIMKA-FGVHPQ-KSTFLLLAEARRATGLT 509 (637)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~p~-~~~~~~l~~~~~~~g~~ 509 (637)
.+.|++++|+..|+.+++..+... ...+..+..+|...|++++|...|+.+.+ +.-.|. ...+..++.++...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 344555555555555554321100 13444555556666666666666666543 111111 22444455555566666
Q ss_pred HHHHHHHHHHhhccc
Q 006640 510 KEAKRILSKIKNKER 524 (637)
Q Consensus 510 ~eA~~~~~~~~~~~~ 524 (637)
++|...++++....|
T Consensus 234 ~~A~~~~~~vi~~yP 248 (263)
T PRK10803 234 AKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHHHHHHHHCc
Confidence 666666666655544
No 199
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.98 E-value=0.011 Score=57.03 Aligned_cols=265 Identities=15% Similarity=0.124 Sum_probs=143.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHH--Hc--CCC-CCHHHHHHHH
Q 006640 79 MNSLIERGKPQEAQAIFNNLIEGGHKPSL----VTYTTLLAALTIQKRFNSIHSIMSQVE--EN--GMD-PDSIFFNAVI 149 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~--~~~-~~~~~~~~li 149 (637)
...+++.|+....+.+|+..++-|-. |. ..|..|..+|.-.+++++|++.+..=+ .+ |-. -...+...|.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 45689999999999999999987642 33 356777788888889999988765421 11 100 0112223344
Q ss_pred HHHHhcCCHHHHHHHHHH----HHHCCC-CCCHHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHH
Q 006640 150 NAFSESGNMEEAMDTFWK----MKESGL-TPTTSTYNTLIKGYGIAGK--------------------PEESVKLLDLMS 204 (637)
Q Consensus 150 ~~~~~~g~~~~A~~~~~~----m~~~~~-~~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~ 204 (637)
..+--.|.+++|...-.+ ..+.|- ......+..+...|...|+ ++.|.++|.+-.
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 444455666666543222 222220 0123345556677765552 233344443221
Q ss_pred h----cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006640 205 R----EGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAA----SGMK-PDVVTYNTIATAYAQNGEADQAEEVIVEME 275 (637)
Q Consensus 205 ~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 275 (637)
+ .|.--.--..|..|...|.-.|+++.|+...+.-+. .|-+ .....+..|.+++.-.|+++.|.+.|+...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 1 110001112345555555566777777766554321 1211 112455567777777777777777776543
Q ss_pred H----CC-CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 006640 276 H----NG-VQPNGRTCGIIISGYCKEGKIKEALRFARTMKEY----G-VHPNLVIFNLLIKGFVEIMDRDGVDEVLALM 344 (637)
Q Consensus 276 ~----~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 344 (637)
. .| -.....+..+|.+.|.-..++++|+.++.+-... + ..-....+-++..++...|..+.|....+.-
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 2 11 1123445566777777777777777766543221 1 1123445666667777777766666555443
No 200
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.94 E-value=0.44 Score=46.45 Aligned_cols=110 Identities=13% Similarity=0.048 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006640 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYS 469 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 469 (637)
+.+.-+.-+...|+...|.++-.+.. -||...|...+.+++..|+|++-..+... . -.++-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 34445666778899999988877774 68999999999999999999987765432 1 24578999999999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 470 EARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 470 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
..|...+|..+..+ +. + ..-+..|.+.|.+.+|.+...+.
T Consensus 249 ~~~~~~eA~~yI~k-----~~-~----~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPK-----IP-D----EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHh-----CC-h----HHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999999988876 22 2 34567788999999998876553
No 201
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.91 E-value=0.22 Score=51.21 Aligned_cols=88 Identities=16% Similarity=0.223 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------
Q 006640 387 DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK------- 459 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------- 459 (637)
+..+...+...+.+...+.-|.++|.+|-.. .++.......+++.+|..+-++.-+ ..||..
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHh
Confidence 3444555555555666677777777776431 2455566677777777777666544 223321
Q ss_pred ----HHHHHHHHHHhcCChhHHHHHHHHHH
Q 006640 460 ----TFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 460 ----~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
-|.---.+|.++|+..||.++++++.
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 12222334555566666666655553
No 202
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.90 E-value=0.02 Score=55.27 Aligned_cols=131 Identities=13% Similarity=0.035 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CC-CCCCHH
Q 006640 355 TYSTIMNAWSTAGFMDKCKEIFDDMGK----AGI-KPDAHAYSILAKGYVREQEPEKAEELLMTMIE----SG-FHPNVV 424 (637)
Q Consensus 355 ~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~~ 424 (637)
.|..|...|.-.|+++.|+..++.-+. .|- ......+..|.+++.-.|+++.|.+.|+.... .| -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 355555566667888888887765332 121 11245677788888888999999888876432 22 123345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006640 425 IFTTIISGWCSDGSMDRAIEVFDKMCE----HG-VSPNLKTFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
+.-+|..+|.-..++++|+.++.+-+. .+ ..-....+.+|..++...|..++|+.+.+...
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 666788888888888999888865432 11 11234578888889988898888888776553
No 203
>PRK15331 chaperone protein SicA; Provisional
Probab=96.81 E-value=0.095 Score=44.59 Aligned_cols=87 Identities=7% Similarity=-0.001 Sum_probs=58.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 006640 398 YVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRA 477 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 477 (637)
+...|++++|..+|+-+...+ +-|...|..|..++-..+++++|+..|......+. -|+..+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 456777777777777766554 45666677777777777777777777776665433 2444455566677777777777
Q ss_pred HHHHHHHHH
Q 006640 478 EEILQIMKA 486 (637)
Q Consensus 478 ~~~~~~m~~ 486 (637)
+..|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 777776654
No 204
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.79 E-value=0.21 Score=51.37 Aligned_cols=100 Identities=23% Similarity=0.226 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006640 74 SMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFS 153 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 153 (637)
.+.+-+-.|.+.|.+++|.++--- |+ ...-|..|.......-+++-|++.|.+....
T Consensus 558 p~~~~m~q~Ieag~f~ea~~iacl----gV--v~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl----------------- 614 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIACL----GV--TDTDWRELAMEALEALDFETARKAYIRVRDL----------------- 614 (1081)
T ss_pred cccccchhhhhccchhhhhccccc----ce--ecchHHHHHHHHHhhhhhHHHHHHHHHHhcc-----------------
Confidence 334445567788888877654211 11 2223444444444444555555555443321
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006640 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDL 202 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 202 (637)
.+-+..--++++.++|-.|+... +...++-.|.+.+|.++|.+
T Consensus 615 ---~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 615 ---RYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred ---HHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 11222334566677766566532 34455566777777777754
No 205
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.74 E-value=0.69 Score=45.81 Aligned_cols=427 Identities=14% Similarity=0.124 Sum_probs=232.2
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH--HH
Q 006640 82 LIERGKPQEAQAIFNNLIEGGHKPSLV------TYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA--FS 153 (637)
Q Consensus 82 ~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~ 153 (637)
+.+++++.+|..+|.++.+. ...+++ .-+.++++|... +.+.....+....+.. | ...|-.|..+ +-
T Consensus 16 Lqkq~~~~esEkifskI~~e-~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDE-KESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF--G-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHH-hhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHH
Confidence 45789999999999998764 222323 234567777643 5555555555555432 2 2233333333 34
Q ss_pred hcCCHHHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCCCHHHH
Q 006640 154 ESGNMEEAMDTFWKMKES--GLTP------------TTSTYNTLIKGYGIAGKPEESVKLLDLMSREG---NVKPNLRTY 216 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~--~~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~ 216 (637)
+.+.+..|.+.+..-.+. +..| |-..-+..++.+...|++.+++.+++++...- ....++.+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 678899999888766544 2211 22223566788899999999999999987642 123688888
Q ss_pred HHHHHHHHhcC--------C-------HHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 006640 217 NVLVRAWCNEK--------N-------ITEAWNVMHKMAAS------GMKPDVVTYNTIATAYAQN--GEADQAEEVIVE 273 (637)
Q Consensus 217 ~~li~~~~~~g--------~-------~~~A~~~~~~~~~~------g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~ 273 (637)
+.++-.+.+.- . ++.+.-+.++|... .+.|-......++....-. ....--.++++.
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 88665554321 1 12222222233221 1222222222222222111 111112222222
Q ss_pred HHHCCCCCCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 006640 274 MEHNGVQPNG-RTCGIIISGYCKEGKIKEALRFARTMKEYGV----HPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR 348 (637)
Q Consensus 274 ~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 348 (637)
-...-+.|+- -+...|...+.+ +.+++..+.+.+....+ ..=..++..++...++.++...|.+.+..+....
T Consensus 251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld 328 (549)
T PF07079_consen 251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD 328 (549)
T ss_pred HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 2233333442 223334444444 45555555544433211 1123567888888888899888888888776543
Q ss_pred CCCCHHH-------HHHHHHHHH----HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH---HHHHcCC-HHHHHHHHHH
Q 006640 349 VNPDVIT-------YSTIMNAWS----TAGFMDKCKEIFDDMGKAGIKPDAHAYSILAK---GYVREQE-PEKAEELLMT 413 (637)
Q Consensus 349 ~~~~~~~-------~~~li~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~-~~~A~~~~~~ 413 (637)
|+... -..+.+..+ ..-+...-+.++..+....+. ......-|+. -+-+.|. -++|+.+++.
T Consensus 329 --p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~ 405 (549)
T PF07079_consen 329 --PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKL 405 (549)
T ss_pred --CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 22211 111112211 111233334455555544321 1222222332 2344555 7889999999
Q ss_pred HHHCCCCCCHHHHHHHHH----HHHhc---CCHHHHHHHHHHHHHCCCCCCH----HHHHHHHH--HHHhcCChhHHHHH
Q 006640 414 MIESGFHPNVVIFTTIIS----GWCSD---GSMDRAIEVFDKMCEHGVSPNL----KTFETLMW--GYSEARQPWRAEEI 480 (637)
Q Consensus 414 ~~~~~~~~~~~~~~~li~----~~~~~---g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~--~~~~~g~~~~A~~~ 480 (637)
+.+-. +-|...-|.+.. .|.+. ..+.+-+.+-+-+.+.|+.|-. ..-+.|.. -+...|++.++.-+
T Consensus 406 il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 406 ILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred HHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 98753 445554444332 23221 2233334444444567877643 33344433 34567888888766
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 006640 481 LQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKN 521 (637)
Q Consensus 481 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 521 (637)
-.-+.+ +.|+..+|..++-.+....+++||..++.++|.
T Consensus 485 s~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 485 SSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 555555 889999999999999999999999999998864
No 206
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.70 E-value=0.055 Score=46.30 Aligned_cols=69 Identities=12% Similarity=0.258 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-----HCCCCCCHHH
Q 006640 426 FTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK-----AFGVHPQKST 495 (637)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~ 495 (637)
...++..+...|++++|+.+.+.+....+ -|...|..++.+|...|+..+|.+.|+++. +.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 33444455556666666666666655432 244455666666666666666666655542 3566665544
No 207
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.68 E-value=0.68 Score=44.88 Aligned_cols=145 Identities=17% Similarity=0.204 Sum_probs=94.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006640 368 FMDKCKEIFDDMGKAGIKPDAHA-YSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVF 446 (637)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 446 (637)
+...|...-.+..+. .||..- -..-..++.+.|+..++-.+++.+-+. .|.+.++...+ +.+.|+ .++.=+
T Consensus 244 dp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~lY~--~ar~gd--ta~dRl 315 (531)
T COG3898 244 DPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALLYV--RARSGD--TALDRL 315 (531)
T ss_pred ChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHHHH--HhcCCC--cHHHHH
Confidence 344555555554443 444322 223456788899999999999988876 55555554333 334443 444444
Q ss_pred HHHHHC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhc
Q 006640 447 DKMCEH-GVSPN-LKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRAT-GLTKEAKRILSKIKNK 522 (637)
Q Consensus 447 ~~m~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-g~~~eA~~~~~~~~~~ 522 (637)
++.... .++|| .+....+..+-...|++..|..--+.... ..|....|..|.++-... |+-.++..++.+...-
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 444321 23444 55777788888889999888776666554 778889999999886655 9999999998887543
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.63 E-value=0.014 Score=42.93 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=31.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006640 396 KGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (637)
..|.+.+++++|.++++.+...+ |.++..|.....++...|++++|...|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34555566666666666655553 445555555555566666666666666665553
No 209
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.62 E-value=0.065 Score=50.63 Aligned_cols=94 Identities=10% Similarity=0.009 Sum_probs=47.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHH
Q 006640 391 YSILAKGYVREQEPEKAEELLMTMIESGFHPN----VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGV--SPNLKTFETL 464 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~l 464 (637)
|...+..+.+.|++++|...|+.+++. .|+ ...+-.+...|...|++++|...|+.+.+.-. ......+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 333333334455566666666655554 122 13444555555666666666666666654311 0112334444
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 006640 465 MWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
+..+...|+.++|..+|++..+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4455556666666666665544
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.62 Score=42.61 Aligned_cols=140 Identities=12% Similarity=0.093 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH-----H
Q 006640 320 IFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSI-----L 394 (637)
Q Consensus 320 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----l 394 (637)
+.+.++..+...+.+.-...++..+++...+.++...+.+.+.-.+.|+.+.|...|+...+..-..+....+. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44556666666677777777777777776666777888888888888888888888887765432333333333 3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006640 395 AKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFE 462 (637)
Q Consensus 395 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 462 (637)
...|.-.+++..|...+.++...+ +.|+...|.-.-+..-.|+..+|++..+.|.+.. |.+.+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC--Cccchhh
Confidence 334556777888888888877664 5566666666666667788888888888888743 4444333
No 211
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=1.4 Score=46.56 Aligned_cols=110 Identities=9% Similarity=0.016 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006640 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYS 469 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 469 (637)
+.+--+.-+...|+..+|.++-.+.. -||...|-.-+.+++..+++++-+++-+.+. .+.-|..+..+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 34444555677888899988888876 6888888888899999999887666554432 3567778889999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006640 470 EARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSK 518 (637)
Q Consensus 470 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~ 518 (637)
+.|+.+||.+++-+.. +.. ..+.+|.+.|++.+|.++.-+
T Consensus 756 ~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHHHH
Confidence 9999999999876532 111 567888999999999887654
No 212
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.50 E-value=0.33 Score=44.21 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=26.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 254 IATAYAQNGEADQAEEVIVEMEHNGVQ--PNGRTCGIIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 254 li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
....+...|++++|...|+.+...... --....-.++.++.+.|++++|...+++.++
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555555555555543211 1122333444555555555555555555544
No 213
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.48 E-value=0.43 Score=43.41 Aligned_cols=22 Identities=18% Similarity=0.067 Sum_probs=10.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 006640 255 ATAYAQNGEADQAEEVIVEMEH 276 (637)
Q Consensus 255 i~~~~~~g~~~~A~~~~~~~~~ 276 (637)
...|.+.|.+..|..-++.+++
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHH
Confidence 3444444555555544444444
No 214
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.32 E-value=0.041 Score=47.11 Aligned_cols=74 Identities=19% Similarity=0.293 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHHHH
Q 006640 388 AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMC-----EHGVSPNLKTFE 462 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~~~~ 462 (637)
..+...++..+...|++++|..+.+.+.... |-|...|..+|.+|...|+..+|+++|+++. +.|+.|+..+-.
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 4456667778888999999999999999875 7788999999999999999999999998875 358888887643
No 215
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.29 E-value=0.00048 Score=41.62 Aligned_cols=32 Identities=9% Similarity=0.076 Sum_probs=28.5
Q ss_pred HHHHHhhhccCCCCCCcccccccccccCCCchhh
Q 006640 539 LERLYHKEATTASYPNLLQIPNVVSSDQKGSAAA 572 (637)
Q Consensus 539 ~e~l~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~ 572 (637)
++|+++++|+++. ++..||++|...|++++|.
T Consensus 2 y~kAie~~P~n~~--a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAE--AYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHH--HHHHHHHHHHHCcCHHhhc
Confidence 5789999999976 5789999999999999986
No 216
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.23 E-value=0.026 Score=41.45 Aligned_cols=53 Identities=15% Similarity=0.148 Sum_probs=23.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006640 152 FSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSR 205 (637)
Q Consensus 152 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 205 (637)
|.+.++++.|.++++.+...++. +...|.....++.+.|++++|.+.|+...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444444444444444444322 334444444444444444444444444444
No 217
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.10 E-value=1.1 Score=44.20 Aligned_cols=27 Identities=15% Similarity=-0.094 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 460 TFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 460 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
.+..++.++.-.|+.++|.+..++|.+
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 344445555555555555555555544
No 218
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.10 E-value=0.15 Score=46.84 Aligned_cols=47 Identities=30% Similarity=0.278 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHhh
Q 006640 475 WRAEEILQIMKAFGVHPQKSTFLLLAEARRATGL-TKEAKRILSKIKN 521 (637)
Q Consensus 475 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-~~eA~~~~~~~~~ 521 (637)
+-++.++++|...|+.||.++-..+++++++.|. ..+-.+++--|+.
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 3478899999999999999999999999998886 3444444444443
No 219
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.06 E-value=1 Score=44.54 Aligned_cols=162 Identities=17% Similarity=0.111 Sum_probs=81.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006640 359 IMNAWSTAGFMDKCKEIFDDMGKAG---IKPDAHAYSILAKGYVR---EQEPEKAEELLMTMIESGFHPNVVIFTTIISG 432 (637)
Q Consensus 359 li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 432 (637)
++-+|....+++..+++.+.+...- +.....+-...+-++.+ .|+.++|+.++..+......+++.++..++..
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3334555666666666666655421 01112222223333444 56666666666664443345566666655554
Q ss_pred HHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH----HHHHH---HHH-HHCCCCCCHH-
Q 006640 433 WCS---------DGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWR----AEEIL---QIM-KAFGVHPQKS- 494 (637)
Q Consensus 433 ~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~----A~~~~---~~m-~~~g~~p~~~- 494 (637)
|-. ....++|+..|.+.-+. .||..+-..++..+...|...+ ..++- ..+ .+.|..-...
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 431 12367788888877763 3555443333333444443222 22222 111 1233222222
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 006640 495 --TFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 495 --~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
.+..++.+..-.|+.++|.+..++|...
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3446667777778888887777777544
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.03 E-value=0.025 Score=42.24 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006640 390 AYSILAKGYVREQEPEKAEELLMTMI 415 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 415 (637)
+++.+...|...|++++|+..|++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444455555555555544443
No 221
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.96 E-value=0.08 Score=52.80 Aligned_cols=100 Identities=13% Similarity=0.073 Sum_probs=71.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006640 385 KPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNV----VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKT 460 (637)
Q Consensus 385 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 460 (637)
+.+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..++++++.+ .| .
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~ 145 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---K 145 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---h
Confidence 446788999999999999999999999999886 4553 459999999999999999999999999852 11 2
Q ss_pred HHHHHH--HHHhcCChhHHHHHHHHHHHCCCC
Q 006640 461 FETLMW--GYSEARQPWRAEEILQIMKAFGVH 490 (637)
Q Consensus 461 ~~~l~~--~~~~~g~~~~A~~~~~~m~~~g~~ 490 (637)
|..+.. .+..-.+..+..++++.+.+.|..
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 221111 111222334566667777666643
No 222
>PRK15331 chaperone protein SicA; Provisional
Probab=95.91 E-value=0.13 Score=43.89 Aligned_cols=92 Identities=11% Similarity=0.104 Sum_probs=73.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006640 429 IISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGL 508 (637)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 508 (637)
...-+...|++++|..+|+-+...++. |..-|..|..+|-..+.+++|+..|......+.. |...+......+...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCC
Confidence 344466899999999999999876543 6777888888888999999999999887543322 33345567788999999
Q ss_pred HHHHHHHHHHHhhc
Q 006640 509 TKEAKRILSKIKNK 522 (637)
Q Consensus 509 ~~eA~~~~~~~~~~ 522 (637)
.++|+..|+.+..+
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998775
No 223
>PRK11906 transcriptional regulator; Provisional
Probab=95.90 E-value=0.57 Score=47.06 Aligned_cols=146 Identities=14% Similarity=0.101 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006640 369 MDKCKEIFDDMGK-AGIKPD-AHAYSILAKGYV---------REQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDG 437 (637)
Q Consensus 369 ~~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 437 (637)
.+.|..+|.+... ....|+ ...|..+...+. ......+|.++.++..+.+ +.|+.....+..+....|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 4566777777662 122333 333333333222 1234567788888888886 788999888888888889
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHH
Q 006640 438 SMDRAIEVFDKMCEHGVSPNLK-TFETLMWGYSEARQPWRAEEILQIMKAFGVHPQK---STFLLLAEARRATGLTKEAK 513 (637)
Q Consensus 438 ~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~~~eA~ 513 (637)
+++.|...|++....+ ||.. +|......+..+|+.++|.+.+++..+ ..|.. ......++.|+.. .+++|.
T Consensus 353 ~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 353 QAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred chhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 9999999999998854 6644 677777778889999999999998665 55553 3444555666655 468888
Q ss_pred HHHHHHh
Q 006640 514 RILSKIK 520 (637)
Q Consensus 514 ~~~~~~~ 520 (637)
+++-+-.
T Consensus 428 ~~~~~~~ 434 (458)
T PRK11906 428 KLYYKET 434 (458)
T ss_pred HHHhhcc
Confidence 8876543
No 224
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.88 E-value=0.75 Score=37.31 Aligned_cols=67 Identities=13% Similarity=0.271 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006640 388 AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVS 455 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 455 (637)
......-++...+.|.-+.-.++++++.+.+ .+++...-.+..+|.+.|+..++.+++.++-+.|++
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3344455666777777777777777776533 677777777788888888888888888887777653
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.88 E-value=0.34 Score=48.50 Aligned_cols=68 Identities=16% Similarity=0.225 Sum_probs=57.6
Q ss_pred ccCcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006640 67 ESCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSL----VTYTTLLAALTIQKRFNSIHSIMSQVEEN 136 (637)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 136 (637)
..+.+...|+.+...|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34567888999999999999999999999998874 4542 46899999999999999999999998875
No 226
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.87 E-value=2.7 Score=43.53 Aligned_cols=389 Identities=12% Similarity=0.042 Sum_probs=193.8
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006640 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVT-YTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVIN 150 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 150 (637)
...|+.|+..--...+.+.+..+++.++.. .|.... |-....-=.+.|..+.+.++|++.+. +++..+..|.....
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLA 121 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHH
Confidence 334555554444444445555666666532 343332 22233333455666666666666654 34555555555554
Q ss_pred HHHh-cCCHHHHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH---H
Q 006640 151 AFSE-SGNMEEAMDTFWKMKES-GLT-PTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAW---C 224 (637)
Q Consensus 151 ~~~~-~g~~~~A~~~~~~m~~~-~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~---~ 224 (637)
.+.. .|+.+.....|+..... |.. .+...|...|..-..++++.....+++++.+. | ..-++....-| .
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P-~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----P-LHQLNRHFDRFKQLL 196 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----h-hhHhHHHHHHHHHHH
Confidence 4432 35566666666665542 110 13445666666655666666666666666552 1 11111111111 1
Q ss_pred h------cCCHHHHHHHHHHHHH--------------------CCCCCCH--HHHHHHHH-------HHHHcCCHHHHHH
Q 006640 225 N------EKNITEAWNVMHKMAA--------------------SGMKPDV--VTYNTIAT-------AYAQNGEADQAEE 269 (637)
Q Consensus 225 ~------~g~~~~A~~~~~~~~~--------------------~g~~~~~--~~~~~li~-------~~~~~g~~~~A~~ 269 (637)
+ ....+++.++-..... .+-+.+. ...+.+-. .+-..-...+...
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~ 276 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRW 276 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 1 1122222222211111 0000000 01111111 1111122222223
Q ss_pred HHHHHHHC---CC----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 006640 270 VIVEMEHN---GV----QPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLA 342 (637)
Q Consensus 270 ~~~~~~~~---~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 342 (637)
.|+.-.+. .+ +++..+|..-++.-.+.|+.+.+.-+|+...--- ..=...|--.+.-....|+.+.+..++.
T Consensus 277 ~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~ 355 (577)
T KOG1258|consen 277 GFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLA 355 (577)
T ss_pred hhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHH
Confidence 33332221 11 2245678888888888999999999888876311 1112234334444444588888887776
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHH---HHHHHHHHCC
Q 006640 343 LMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA-HAYSILAKGYVREQEPEKAE---ELLMTMIESG 418 (637)
Q Consensus 343 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~ 418 (637)
...+...+..+.+--.-....-..|++..|..+++.+...- |+. .+-..-+.+..+.|..+.+. .++......
T Consensus 356 ~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~- 432 (577)
T KOG1258|consen 356 RACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG- 432 (577)
T ss_pred hhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc-
Confidence 66554433333332222223445789999999999988753 432 22233345566788888777 333333322
Q ss_pred CCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 006640 419 FHPNVVIFTTIIS-----GWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQP 474 (637)
Q Consensus 419 ~~~~~~~~~~li~-----~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 474 (637)
.-+..+...+.- -+...++.+.|..++.++.+. .+++...|..++..+...+..
T Consensus 433 -~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 433 -KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred -ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCcc
Confidence 222222222222 234567889999999998875 445667788888777665533
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.86 E-value=0.032 Score=41.58 Aligned_cols=60 Identities=20% Similarity=0.243 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006640 425 IFTTIISGWCSDGSMDRAIEVFDKMCEH----GVS-PN-LKTFETLMWGYSEARQPWRAEEILQIM 484 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m 484 (637)
+++.+...|...|++++|+..|++..+. |.. |+ ..++..+..++...|++++|++++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455555555555555555555555421 100 11 223444444444555555555544443
No 228
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.66 E-value=0.93 Score=41.09 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 006640 144 FFNAVINAFSESGNMEEAMDTFWKM 168 (637)
Q Consensus 144 ~~~~li~~~~~~g~~~~A~~~~~~m 168 (637)
.++....+|..+|.++.|-..+++.
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHH
Confidence 3444445555555555554444443
No 229
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.64 E-value=0.27 Score=45.55 Aligned_cols=100 Identities=14% Similarity=0.126 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHH-HCCCCCCH-HHHHHHH
Q 006640 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHGVS--PNLKTFETLMWGYSEARQPWRAEEILQIMK-AFGVHPQK-STFLLLA 500 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~p~~-~~~~~l~ 500 (637)
.|+.-+. +.+.|++..|...|...++..+. -....+-.|..++...|++++|..+|..+. +++-.|.. +.+.-++
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3444443 44566677777777777765321 112344557778888888888888887774 45555554 5777888
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcccc
Q 006640 501 EARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 501 ~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
....+.|+.++|...++++..+.|.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 8888888888888888888877664
No 230
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.60 E-value=0.25 Score=40.66 Aligned_cols=52 Identities=21% Similarity=0.308 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 006640 173 LTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWC 224 (637)
Q Consensus 173 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 224 (637)
..|+..+..+++.+|+.+|++..|+++++...+.-+++-+..+|..|+.-..
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4456666666666666666666666666666665555555666666665443
No 231
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=2.1 Score=40.27 Aligned_cols=145 Identities=13% Similarity=0.126 Sum_probs=75.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 006640 151 AFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNIT 230 (637)
Q Consensus 151 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 230 (637)
.....|++.+|..+|......... +...-..++.+|...|+.+.|..++..++.... .........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhcCC
Confidence 445566666666666666655433 345556666666677777777777766654320 011111112233333433333
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHHcCCH
Q 006640 231 EAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGV-QPNGRTCGIIISGYCKEGKI 299 (637)
Q Consensus 231 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~ 299 (637)
+...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.+.+. ..|...-..++..+.-.|.-
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPA 288 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCC
Confidence 333333333321 22555555666667777777777666655544321 13445556666666665533
No 232
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.55 E-value=1.2 Score=46.50 Aligned_cols=120 Identities=23% Similarity=0.221 Sum_probs=78.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCChhH
Q 006640 401 EQEPEKAEELLMTMIESGFHPNVVIFTT-IISGWCSDGSMDRAIEVFDKMCEHG---VSPNLKTFETLMWGYSEARQPWR 476 (637)
Q Consensus 401 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~l~~~~~~~g~~~~ 476 (637)
....+.|.+++..+.+. -|+...|.. -...+...|++++|++.|++..... .......+--+...+.-.++|++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45677888888888876 466555543 3445677888888888888765321 11223345556777778888999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-HHHHHcCCH-------HHHHHHHHHHhhcc
Q 006640 477 AEEILQIMKAFGVHPQKSTFLLLA-EARRATGLT-------KEAKRILSKIKNKE 523 (637)
Q Consensus 477 A~~~~~~m~~~g~~p~~~~~~~l~-~~~~~~g~~-------~eA~~~~~~~~~~~ 523 (637)
|.+.|..+.+.. .....+|.-+. -++...|+. ++|..++.+++...
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 988888887632 12334444333 345567777 88888888887553
No 233
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.55 E-value=2.9 Score=41.60 Aligned_cols=402 Identities=11% Similarity=0.097 Sum_probs=208.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006640 93 AIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESG 172 (637)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 172 (637)
++=+++.+ .+.|..+|-.|+.-+..++..++..+++++|..- ++--..+|..-+++=....++.....+|.+.....
T Consensus 30 rLRerIkd--NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIKD--NPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhhc--CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 44455554 3568999999999999999999999999998743 34456678888887777889999999999987764
Q ss_pred CCCCHHHHHHHHHHHHhcCCh------HHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHH---------hcCCHHHHHHHH
Q 006640 173 LTPTTSTYNTLIKGYGIAGKP------EESVKLLDLMSREGNVK-PNLRTYNVLVRAWC---------NEKNITEAWNVM 236 (637)
Q Consensus 173 ~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~~-~~~~~~~~li~~~~---------~~g~~~~A~~~~ 236 (637)
. +...|...+.---+.+.. ....+.|+-......+. .....|+..+...- .+.+++...+.+
T Consensus 107 l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 107 L--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred c--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 3 466677666544443311 11122333332211122 23445555544332 233455666667
Q ss_pred HHHHHCCCCCCHHHHHH------HHHHHH-H------cCCHHHHHHHHHHHHH--CCCC----CChhhHHHH--------
Q 006640 237 HKMAASGMKPDVVTYNT------IATAYA-Q------NGEADQAEEVIVEMEH--NGVQ----PNGRTCGII-------- 289 (637)
Q Consensus 237 ~~~~~~g~~~~~~~~~~------li~~~~-~------~g~~~~A~~~~~~~~~--~~~~----~~~~~~~~l-------- 289 (637)
.+|+..-+..=...|+- =++-.. + .--+-.|...++++.. .|.. .+..+++..
T Consensus 185 ~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~W 264 (660)
T COG5107 185 MRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNW 264 (660)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchh
Confidence 77765322111122211 111100 0 0113345555555432 2221 112222221
Q ss_pred ---HHHHHHc-----CC-HHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHH
Q 006640 290 ---ISGYCKE-----GK-IKE-ALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTI 359 (637)
Q Consensus 290 ---i~~~~~~-----g~-~~~-A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 359 (637)
|.--... |+ ... ..-++++.... +.-....|----.-+...++-+.|........+. .|. .-..+
T Consensus 265 lNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps--L~~~l 339 (660)
T COG5107 265 LNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS--LTMFL 339 (660)
T ss_pred hhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc--hheeH
Confidence 1110000 00 000 01111111111 0112222322222333444445555444433222 122 11112
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH------H---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 360 MNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYV------R---EQEPEKAEELLMTMIESGFHPNVVIFTTII 430 (637)
Q Consensus 360 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~------~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 430 (637)
...|.-..+-+.....|+.... .|.+-|. . .|+++...+++-+-. ..=...|...+
T Consensus 340 se~yel~nd~e~v~~~fdk~~q-----------~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~----~k~t~v~C~~~ 404 (660)
T COG5107 340 SEYYELVNDEEAVYGCFDKCTQ-----------DLKRKYSMGESESASKVDNNFEYSKELLLKRI----NKLTFVFCVHL 404 (660)
T ss_pred HHHHhhcccHHHHhhhHHHHHH-----------HHHHHHhhhhhhhhccccCCccccHHHHHHHH----hhhhhHHHHHH
Confidence 2223333333333333333221 1111111 0 233332222222111 22356788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCC
Q 006640 431 SGWCSDGSMDRAIEVFDKMCEHG-VSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFL-LLAEARRATGL 508 (637)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~l~~~~~~~g~ 508 (637)
....+..-++.|..+|-+..+.| +.++...+.+++.-+ ..|+..-|..+|+.-.. .-||...|. ..++-+.+.|+
T Consensus 405 N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~--~f~d~~~y~~kyl~fLi~ind 481 (660)
T COG5107 405 NYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLL--KFPDSTLYKEKYLLFLIRIND 481 (660)
T ss_pred HHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCc
Confidence 88888888999999999999887 567777888888755 46888899999987544 345655554 66677788899
Q ss_pred HHHHHHHHHHHhhc
Q 006640 509 TKEAKRILSKIKNK 522 (637)
Q Consensus 509 ~~eA~~~~~~~~~~ 522 (637)
-..|..+|++..++
T Consensus 482 e~naraLFetsv~r 495 (660)
T COG5107 482 EENARALFETSVER 495 (660)
T ss_pred HHHHHHHHHHhHHH
Confidence 99999999866544
No 234
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.54 E-value=2.6 Score=41.09 Aligned_cols=311 Identities=15% Similarity=0.169 Sum_probs=198.7
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHH
Q 006640 87 KPQEAQAIFNNLIEGGHKPSLVTYTTLLAAL--TIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA--FSESGNMEEAM 162 (637)
Q Consensus 87 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~ 162 (637)
.+..+...|..-.+. ..|..|-.++ ...|+-..|.++-.+..+. +..|......|+.+ -.-.|+.+.|.
T Consensus 68 sP~t~~Ryfr~rKRd------rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar 140 (531)
T COG3898 68 SPYTARRYFRERKRD------RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDAR 140 (531)
T ss_pred CcHHHHHHHHHHHhh------hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHH
Confidence 455566666655431 1244444333 3457888888777665432 23444444444433 34569999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH----HHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006640 163 DTFWKMKESGLTPTTSTYNTLIKG----YGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHK 238 (637)
Q Consensus 163 ~~~~~m~~~~~~~~~~~~~~li~~----~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 238 (637)
+-|+.|.. |+.+-..=+++ --+.|..+.|...-+...... +.-...+...+...+..|+++.|+++++.
T Consensus 141 ~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~ 213 (531)
T COG3898 141 KKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDA 213 (531)
T ss_pred HHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHH
Confidence 99999986 44444333332 246788999999888887653 44467889999999999999999999987
Q ss_pred HHHCC-CCCCHHH--HHHHHHHHH---HcCCHHHHHHHHHHHHHCCCCCChhhH-HHHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 239 MAASG-MKPDVVT--YNTIATAYA---QNGEADQAEEVIVEMEHNGVQPNGRTC-GIIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 239 ~~~~g-~~~~~~~--~~~li~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
-+... +.++..- -..|+.+-. -.-+...|...-.+..+ +.||..-- ..-..++.+.|+..++-.+++.+-+
T Consensus 214 ~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK 291 (531)
T COG3898 214 QRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK 291 (531)
T ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh
Confidence 76543 3444322 223333222 12355666666555544 35664332 2345788999999999999999987
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH---HhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 006640 312 YGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALM---KEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDA 388 (637)
Q Consensus 312 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 388 (637)
.. |.+..+...+ +.+.|+ .+..-++.. .... +.+......+..+-...|++..|..--+..... .|..
T Consensus 292 ~e--PHP~ia~lY~--~ar~gd--ta~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pre 362 (531)
T COG3898 292 AE--PHPDIALLYV--RARSGD--TALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRE 362 (531)
T ss_pred cC--CChHHHHHHH--HhcCCC--cHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--Cchh
Confidence 74 4444433322 334444 344333333 2222 235566667777878889999888877776654 6788
Q ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCC
Q 006640 389 HAYSILAKGYVR-EQEPEKAEELLMTMIESGFHPN 422 (637)
Q Consensus 389 ~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~ 422 (637)
..|-.|.+.-.. .|+-.++...+.+..+..-.|+
T Consensus 363 s~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 363 SAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred hHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 888888887654 5999999999999987643343
No 235
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.53 E-value=0.53 Score=45.11 Aligned_cols=128 Identities=15% Similarity=0.082 Sum_probs=83.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-H-
Q 006640 356 YSTIMNAWSTAGFMDKCKEIFDDMGKAGIK-----PDAHAYSILAKGYVREQEPEKAEELLMTMIES----GFHPNV-V- 424 (637)
Q Consensus 356 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~- 424 (637)
...+..++...+.++++++.|+...+.... ....++..|...|.+..++++|.-+..+..+. ++ .|. .
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l-~d~~~k 203 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGL-KDWSLK 203 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCc-CchhHH
Confidence 344666777788888888888876653111 12467888888888888998888777665432 21 121 1
Q ss_pred ----HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHH
Q 006640 425 ----IFTTIISGWCSDGSMDRAIEVFDKMCE----HGVSPNL-KTFETLMWGYSEARQPWRAEEILQIM 484 (637)
Q Consensus 425 ----~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m 484 (637)
+.-.|..++...|....|.+.-++..+ .|-.|.. .....+.+.|...|+.+.|+.-|+..
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 223344567778888888888777653 3433322 24566777888888888888777664
No 236
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.37 E-value=0.36 Score=39.68 Aligned_cols=54 Identities=9% Similarity=0.148 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHc
Q 006640 453 GVSPNLKTFETLMWGYSEARQPWRAEEILQIMK-AFGVHPQKSTFLLLAEARRAT 506 (637)
Q Consensus 453 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~ 506 (637)
...|+..++.+++.+|+..|++..|+++.+... .+++..+...|..++.-....
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 456788888888888888888888888887764 577777777777777554433
No 237
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.59 Score=45.77 Aligned_cols=139 Identities=10% Similarity=-0.015 Sum_probs=80.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006640 79 MNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNM 158 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 158 (637)
.+.|.+.|++..|...|++.... -... ..-+.++..... ..-..+++.|...|.+.+++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~--l~~~-----------~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF--LEYR-----------RSFDEEEQKKAE--------ALKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH--hhcc-----------ccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhhhH
Confidence 35678888888888888876541 0000 000111111110 11234456666777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHH
Q 006640 159 EEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNIT-EAWNVMH 237 (637)
Q Consensus 159 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~ 237 (637)
..|++.-.+..+.+.. |+...-.-..+|...|+++.|+..|.++.+.. |.|-..-+.|+.+-.+..... ...++|.
T Consensus 274 ~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777776543 66666667777777777777777777777753 333344444444444433333 3356666
Q ss_pred HHHH
Q 006640 238 KMAA 241 (637)
Q Consensus 238 ~~~~ 241 (637)
.|..
T Consensus 351 ~mF~ 354 (397)
T KOG0543|consen 351 NMFA 354 (397)
T ss_pred HHhh
Confidence 6654
No 238
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.23 E-value=0.78 Score=37.09 Aligned_cols=93 Identities=18% Similarity=0.111 Sum_probs=69.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhc
Q 006640 79 MNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSI---FFNAVINAFSES 155 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~ 155 (637)
.-++++.|+++.|++.|.+.+.. .+..+..||.-..++.-+|+.++|++-+.+.++..-+.... .|..-...|-..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 34677889999999999988864 23478889999999999999999999888887754233333 333334567777
Q ss_pred CCHHHHHHHHHHHHHCC
Q 006640 156 GNMEEAMDTFWKMKESG 172 (637)
Q Consensus 156 g~~~~A~~~~~~m~~~~ 172 (637)
|+.+.|..=|+...+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 88888888888887776
No 239
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.64 Score=45.51 Aligned_cols=96 Identities=14% Similarity=0.068 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHH
Q 006640 424 VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFL-LLAEA 502 (637)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~l~~~ 502 (637)
.+++.+..+|.+.+++.+|++.-++.++.+. +|...+-.-..+|...|+++.|+..|+++++ +.|+..... .++.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 3445555666666666666666666666542 3555555556666666666666666666666 555554333 33333
Q ss_pred HHHcCCHH-HHHHHHHHHhhc
Q 006640 503 RRATGLTK-EAKRILSKIKNK 522 (637)
Q Consensus 503 ~~~~g~~~-eA~~~~~~~~~~ 522 (637)
-.+..... ...+++..|..+
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 33333333 335666666544
No 240
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.14 E-value=1.3 Score=44.62 Aligned_cols=58 Identities=17% Similarity=0.123 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006640 427 TTIISGWCSDGSMDRAIEVFDKMCEHGVSP-NLKTFETLMWGYSEARQPWRAEEILQIM 484 (637)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 484 (637)
..+..++.+.|+.++|++.|++|.+..... +......|+.++...+.+.++..++.+-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 445556667777777777777776532211 2235556777777777777777776654
No 241
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.07 E-value=1.4 Score=37.11 Aligned_cols=44 Identities=9% Similarity=0.084 Sum_probs=21.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006640 76 TKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQ 120 (637)
Q Consensus 76 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 120 (637)
..++..+...+.+......++.+...+ ..++..++.++..|++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 344555555555555555555555443 23444455555555443
No 242
>PRK11906 transcriptional regulator; Provisional
Probab=95.06 E-value=0.82 Score=45.97 Aligned_cols=120 Identities=11% Similarity=0.048 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006640 403 EPEKAEELLMTMIES-GFHPN-VVIFTTIISGWCS---------DGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEA 471 (637)
Q Consensus 403 ~~~~A~~~~~~~~~~-~~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 471 (637)
..+.|..+|.+.... ...|+ ...|..+..++.. .....+|.++-++..+.+.. |......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhh
Confidence 356788899998821 12444 3444444444332 33466788888888887654 888888888888999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 006640 472 RQPWRAEEILQIMKAFGVHPQKS-TFLLLAEARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 472 g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
|+.+.|...|++... +.|+.. .|......+.-+|+.++|.+.+++.....|.
T Consensus 352 ~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 352 GQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred cchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 999999999999887 678754 6777777888899999999999998877663
No 243
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.98 E-value=0.85 Score=46.77 Aligned_cols=155 Identities=12% Similarity=0.102 Sum_probs=75.6
Q ss_pred HHHHHcCChhHHHHHHH--HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006640 80 NSLIERGKPQEAQAIFN--NLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGN 157 (637)
Q Consensus 80 ~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 157 (637)
....-+|+++++..+.+ ++.. .+ +..-.+.+++-+-+.|-.+.|+.+- .|+. .-.....++|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~---------~D~~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFV---------TDPD---HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHS---------S-HH---HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhc---------CChH---HHhHHHHhcCC
Confidence 44455677777666654 2221 11 2344566666666666666666542 2222 12334456666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006640 158 MEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMH 237 (637)
Q Consensus 158 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 237 (637)
++.|.++.++. .+...|..|.....+.|+++-|.+.|.+... |..|+-.|.-.|+.+.-.++.+
T Consensus 334 L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 334 LDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHH
Confidence 66666554433 2455666666666666666666666665432 4555555666666665555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006640 238 KMAASGMKPDVVTYNTIATAYAQNGEADQAEEVI 271 (637)
Q Consensus 238 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 271 (637)
.....| -++....++.-.|+.++..+++
T Consensus 398 ~a~~~~------~~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 398 IAEERG------DINIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHcc------CHHHHHHHHHHcCCHHHHHHHH
Confidence 555443 1233334444455555555554
No 244
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.94 E-value=3 Score=38.32 Aligned_cols=165 Identities=16% Similarity=0.087 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHH
Q 006640 355 TYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAK-GYVREQEPEKAEELLMTMIESGF--HPNVVIFTTIIS 431 (637)
Q Consensus 355 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~ 431 (637)
.+......+...+.+..+...+.........+ ......... .+...|+++.|...+.+...... ......+.....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (291)
T COG0457 97 ALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGA 175 (291)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhh
Confidence 33333444444444455555555444322111 111111112 44555555555555555543210 012222233333
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHH
Q 006640 432 GWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTK 510 (637)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~ 510 (637)
.+...++.+.|...+.++...........+..+...+...+..++|...+..... ..|+ ...+..+...+...|..+
T Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 253 (291)
T COG0457 176 LLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDNAEALYNLALLLLELGRYE 253 (291)
T ss_pred HHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHH
Confidence 3445556666666666655532110244555555555556666666666655544 2232 233333333333555556
Q ss_pred HHHHHHHHHhhc
Q 006640 511 EAKRILSKIKNK 522 (637)
Q Consensus 511 eA~~~~~~~~~~ 522 (637)
++...+.+....
T Consensus 254 ~~~~~~~~~~~~ 265 (291)
T COG0457 254 EALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHh
Confidence 666555555443
No 245
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.91 E-value=1.9 Score=36.42 Aligned_cols=127 Identities=9% Similarity=0.096 Sum_probs=92.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006640 110 YTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI 189 (637)
Q Consensus 110 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 189 (637)
...++..+...+........++.+...+ +.+...++.++..|++.. ..+....+.. . .+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~----~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--K----SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c----cccCCHHHHHHHHHH
Confidence 3567777777888999999999998887 578889999999999864 3444444442 1 244556668888999
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006640 190 AGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNE-KNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQ 260 (637)
Q Consensus 190 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 260 (637)
.+.++++.-++.++.. +...+..+... ++.+.|.+.+.+-. +...|..++..+..
T Consensus 82 ~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~~------~~~lw~~~~~~~l~ 137 (140)
T smart00299 82 AKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQN------NPELWAEVLKALLD 137 (140)
T ss_pred cCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhCC------CHHHHHHHHHHHHc
Confidence 9999999999987743 23334444444 88999999887732 56688888877654
No 246
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.89 E-value=4.6 Score=40.32 Aligned_cols=393 Identities=14% Similarity=0.159 Sum_probs=202.2
Q ss_pred HHHHHHHH--HHcCChhHHHHHHHHHHhC--CCCC------------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 006640 75 MTKLMNSL--IERGKPQEAQAIFNNLIEG--GHKP------------SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGM 138 (637)
Q Consensus 75 ~~~l~~~~--~~~g~~~~A~~~~~~~~~~--~~~~------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 138 (637)
|-.|..++ .+.+.+++|++.|.....+ +..| |-+.=+..+.++...|++.+++.++.++...=+
T Consensus 80 ~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ll 159 (549)
T PF07079_consen 80 YLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLL 159 (549)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence 44444443 4688899998888776654 2221 111223445677788899888888888765433
Q ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 006640 139 ----DPDSIFFNAVINAFSESGNMEEAMDTFWKMKES---GLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKP 211 (637)
Q Consensus 139 ----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 211 (637)
..+..+|+.++-++.++ .|-++.+. ++-| -|--++-.|.+.=..-++.. +.+ +-|
T Consensus 160 krE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~p---dyYemilfY~kki~~~d~~~-Y~k------~~p 221 (549)
T PF07079_consen 160 KRECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYP---DYYEMILFYLKKIHAFDQRP-YEK------FIP 221 (549)
T ss_pred hhhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccCh---HHHHHHHHHHHHHHHHhhch-HHh------hCc
Confidence 37788888877666543 34444332 1222 24444444433211111100 000 112
Q ss_pred CHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----CChh
Q 006640 212 NLRTYNVLVRAWCN--EKNITEAWNVMHKMAASGMKPDVV-TYNTIATAYAQNGEADQAEEVIVEMEHNGVQ----PNGR 284 (637)
Q Consensus 212 ~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~ 284 (637)
-......++.-..- ..+..--.+++......-+.|+-. +...|...+.+ +.+++..+-+.+....+. .=..
T Consensus 222 eeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~ 299 (549)
T PF07079_consen 222 EEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELID 299 (549)
T ss_pred HHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 22222222222111 111111222222222222334422 22233333333 444444444433322111 1135
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHHH----cCCHhHHHHHHHHHHhCCCCCCH
Q 006640 285 TCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNL-------LIKGFVE----IMDRDGVDEVLALMKEFRVNPDV 353 (637)
Q Consensus 285 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 353 (637)
++..++....+.++..+|.+.+.-+... .|+...-.- +.+..+. .-+...-..+++......+...
T Consensus 300 ~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq- 376 (549)
T PF07079_consen 300 RFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ- 376 (549)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-
Confidence 6777788888888888888888777654 233321111 1122221 1112233445555554433211
Q ss_pred HHHHHH---HHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHH---HcCCHHHHHHHHHHHHHCCCCCC
Q 006640 354 ITYSTI---MNAWSTAGF-MDKCKEIFDDMGKAGIKPDAHAYSILAK----GYV---REQEPEKAEELLMTMIESGFHPN 422 (637)
Q Consensus 354 ~~~~~l---i~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~---~~g~~~~A~~~~~~~~~~~~~~~ 422 (637)
....-| ..-+-+.|. -++|+.+++.+.+-. +-|..+-|.... .|. ....+..-.++-+-+.+.|++|-
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i 455 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPI 455 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcc
Confidence 111112 223445555 888999999988742 234444333322 232 23344555555555667777664
Q ss_pred HH----HHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 006640 423 VV----IFTTIISG--WCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTF 496 (637)
Q Consensus 423 ~~----~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 496 (637)
.+ .-|.+..+ +..+|++.++.-.-.=+.+ +.|++.+|..++-++....++++|++++.. +.|+..++
T Consensus 456 ~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~ 528 (549)
T PF07079_consen 456 TISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMR 528 (549)
T ss_pred cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhH
Confidence 33 44445444 4578999988665544444 779999999999999999999999999876 56777666
Q ss_pred HH
Q 006640 497 LL 498 (637)
Q Consensus 497 ~~ 498 (637)
..
T Consensus 529 ds 530 (549)
T PF07079_consen 529 DS 530 (549)
T ss_pred HH
Confidence 54
No 247
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.76 E-value=2.2 Score=44.42 Aligned_cols=164 Identities=16% Similarity=0.139 Sum_probs=104.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCHH
Q 006640 145 FNAVINAFSESGNMEEAMDTFWKMKESGLTPTTS------TYNTLIKGYGI----AGKPEESVKLLDLMSREGNVKPNLR 214 (637)
Q Consensus 145 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~ 214 (637)
...++....=.|+-+.+++.+.+..+.+--..+. .|+..+..++. ....+.|.++++.+.+.- |+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcH
Confidence 3445555555677777777777765532111222 23444443333 456788999999998863 6655
Q ss_pred HHHH-HHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 006640 215 TYNV-LVRAWCNEKNITEAWNVMHKMAASG---MKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIII 290 (637)
Q Consensus 215 ~~~~-li~~~~~~g~~~~A~~~~~~~~~~g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 290 (637)
.|.. -.+.+...|++++|++.|++..... .+.....+--+.-.+.-..+|++|.+.|..+.+..- .+...|.-+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHH
Confidence 5544 4566778899999999999765321 112334455677778889999999999999987532 2333444333
Q ss_pred -HHHHHcCCH-------HHHHHHHHHHHHc
Q 006640 291 -SGYCKEGKI-------KEALRFARTMKEY 312 (637)
Q Consensus 291 -~~~~~~g~~-------~~A~~~~~~~~~~ 312 (637)
.++...|+. ++|.++|.++...
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 344456777 8899999888643
No 248
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.75 E-value=1.6 Score=42.01 Aligned_cols=166 Identities=12% Similarity=0.036 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CC----CHHH
Q 006640 355 TYSTIMNAWSTAGFMDKCKEIFDDMGKA-GIKP---DAHAYSILAKGYVREQEPEKAEELLMTMIESGF-HP----NVVI 425 (637)
Q Consensus 355 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~ 425 (637)
.|..+..++.+..++.+++.+-+.-... |..| .-...-++..++.-.+.++++++.|+...+... .. ...+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 4555555666666666666655543321 2222 123344567777788889999999998775321 11 2347
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHH-----HHHHHHHHHhcCChhHHHHHHHHHH----HCCCCCC
Q 006640 426 FTTIISGWCSDGSMDRAIEVFDKMCE----HGVSPNLKT-----FETLMWGYSEARQPWRAEEILQIMK----AFGVHPQ 492 (637)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~-----~~~l~~~~~~~g~~~~A~~~~~~m~----~~g~~p~ 492 (637)
+..|.+.|.+..|+++|+-+..++.+ .++..-..- ...+.-++...|..-.|.+.-++.. ..|-.|.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 88899999999999999988877654 233311112 3344557788898888888887764 4554444
Q ss_pred HH-HHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006640 493 KS-TFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 493 ~~-~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
.. ...++.|+|...|+.|.|.+-++++.
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 33 45688899999999999988887763
No 249
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=4 Score=38.47 Aligned_cols=124 Identities=10% Similarity=0.057 Sum_probs=79.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006640 184 IKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGE 263 (637)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 263 (637)
.......|++.+|..+|....... +.+...-..++.+|...|+.+.|..++..+...--.........-|..+.+...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 334567888888999888887764 455677778888888999999999988887654222222222233444555555
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 264 ADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 264 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
..+...+-.+.-.. +.|...-..+...+...|+.++|.+.+-.+.+
T Consensus 219 ~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 219 TPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444444332 22566666777778888888888776655543
No 250
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.51 E-value=0.83 Score=36.94 Aligned_cols=53 Identities=13% Similarity=0.124 Sum_probs=25.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006640 398 YVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
.+..|+++.|++.|.+.+.. .|.....||.-..++.-.|+.++|++-+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555554443 133444455555555555555555555554444
No 251
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.36 E-value=4.9 Score=40.78 Aligned_cols=152 Identities=13% Similarity=0.131 Sum_probs=85.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006640 76 TKLMNSLIERGKPQEAQAIFNNLIEGGHKPSL-VTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE 154 (637)
Q Consensus 76 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 154 (637)
..+|...-+..+++.-++.-.+.++ +.||- ..|..|.. -......++.++|++..+.| +. .+.+
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAg-E~----------~lg~ 236 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALE--INPDCADAYILLAE--EEASTIVEAEELLRQAVKAG-EA----------SLGK 236 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHH-HH----------hhch
Confidence 3456666667777777777777665 33432 22322211 12335677888888777654 10 0000
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006640 155 SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWN 234 (637)
Q Consensus 155 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 234 (637)
.......-..++....+...+-..+-..+..+.-+.|+.++|++.|.+|.+......+......|+.++...+.+.++..
T Consensus 237 s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 237 SQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred hhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 00000101112222222222334444556677778889999999988887654111234567778888888888888888
Q ss_pred HHHHHHHC
Q 006640 235 VMHKMAAS 242 (637)
Q Consensus 235 ~~~~~~~~ 242 (637)
++.+..+.
T Consensus 317 lL~kYdDi 324 (539)
T PF04184_consen 317 LLAKYDDI 324 (539)
T ss_pred HHHHhccc
Confidence 88887543
No 252
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.30 E-value=0.18 Score=32.53 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=17.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006640 391 YSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFT 427 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 427 (637)
+..+...|...|++++|.++|+++++.. |.|...|.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~ 39 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWR 39 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHH
Confidence 4444455555555555555555555442 33444443
No 253
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.19 E-value=4.3 Score=36.99 Aligned_cols=204 Identities=12% Similarity=0.136 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006640 109 TYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYG 188 (637)
Q Consensus 109 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 188 (637)
.|.....+|...+++++|...+.+..+.- ..+...|.+ ...++.|.-+.+++.+.. --+..|+.-..+|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~y-EnnrslfhA-------AKayEqaamLake~~kls--Evvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFHA-------AKAYEQAAMLAKELSKLS--EVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHHH-------HHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHH
Confidence 34444556666777888877776665321 222222221 122345555555555431 11234556667777
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C--CCCCHHHHHHHHHHHHHcCC
Q 006640 189 IAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAAS---G--MKPDVVTYNTIATAYAQNGE 263 (637)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---g--~~~~~~~~~~li~~~~~~g~ 263 (637)
.+|.++.|-..+++..+. ...-++++|+++|++.... + ...-...+....+.+.+...
T Consensus 103 E~GspdtAAmaleKAak~-----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA-----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HhCCcchHHHHHHHHHHH-----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 888877777666655431 1223344455555443321 0 00001222334445555556
Q ss_pred HHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCHh
Q 006640 264 ADQAEEVIVEMEHN----GVQPN-GRTCGIIISGYCKEGKIKEALRFARTMKEYG---VHPNLVIFNLLIKGFVEIMDRD 335 (637)
Q Consensus 264 ~~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~ 335 (637)
+++|-..|.+-... .--++ -..+...|-.|.-..++..|.+.++.--+.+ -+.+..+...|+.+|-. |+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~-gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDE-GDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhcc-CCHH
Confidence 66555544332110 00011 1223344444555566666666666543221 12244455555555533 4444
Q ss_pred HHHHH
Q 006640 336 GVDEV 340 (637)
Q Consensus 336 ~a~~~ 340 (637)
++..+
T Consensus 245 ~~~kv 249 (308)
T KOG1585|consen 245 EIKKV 249 (308)
T ss_pred HHHHH
Confidence 44433
No 254
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.18 E-value=10 Score=41.11 Aligned_cols=175 Identities=11% Similarity=0.108 Sum_probs=110.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH----HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006640 76 TKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAA----LTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA 151 (637)
Q Consensus 76 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 151 (637)
..-+..+.+...++-|+.+-..- ..+..+...+.+. +.+.|++++|..-|-+.+..- .| ..++.-
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~-----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi~k 406 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQ-----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP-----SEVIKK 406 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHHHH
Confidence 34466677777777777665443 2344444444433 456789999888777655431 22 234555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006640 152 FSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITE 231 (637)
Q Consensus 152 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 231 (637)
|....+..+-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.++
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~---~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW---FFDVETALEILRKSNYLDE 481 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce---eeeHHHHHHHHHHhChHHH
Confidence 66666777778888888888876 67777889999999999888777776554 3311 1123445566666676777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 232 AWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEM 274 (637)
Q Consensus 232 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 274 (637)
|..+-.+... ....... .+-..+++++|++.+..+
T Consensus 482 a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 7665544432 2333222 344567888888887665
No 255
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.14 E-value=1.5 Score=45.10 Aligned_cols=131 Identities=17% Similarity=0.188 Sum_probs=97.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006640 75 MTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE 154 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 154 (637)
.+.+++.+-+.|.++.|+++-. |+. .-.....+.|+++.|.++..+ ..+...|..|.....+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHH
Confidence 6778888889999999987643 332 233445688999999876442 4578899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006640 155 SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWN 234 (637)
Q Consensus 155 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 234 (637)
.|+++-|.+.|.+... +..|+-.|...|+.+.-.++.+.....| -++....++.-.|+.++..+
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-------~~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-------DINIAFQAALLLGDVEECVD 423 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--------HHHHHHHHHHHT-HHHHHH
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-------CHHHHHHHHHHcCCHHHHHH
Confidence 9999999999998764 6778888889999988888887777665 26666777777888888887
Q ss_pred HHHHH
Q 006640 235 VMHKM 239 (637)
Q Consensus 235 ~~~~~ 239 (637)
++.+.
T Consensus 424 lL~~~ 428 (443)
T PF04053_consen 424 LLIET 428 (443)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 77553
No 256
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.14 E-value=9.5 Score=40.71 Aligned_cols=319 Identities=13% Similarity=0.115 Sum_probs=168.6
Q ss_pred CCCCCCHHHHH-----HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCC
Q 006640 171 SGLTPTTSTYN-----TLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKN--ITEAWNVMHKMAASG 243 (637)
Q Consensus 171 ~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~g 243 (637)
.|++.+..-|. .+|.-+...+.+..|+++-..+.... ......|.....-+.+..+ -+++.+.+++=....
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~--~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE--SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc--ccccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 35665555553 35677778888999998887775321 1124556666666665532 223333333222221
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 006640 244 MKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQ----PNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLV 319 (637)
Q Consensus 244 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 319 (637)
. -+..+|..+.+-....|+++.|..+++.-...+.. .+..-+...+.-..+.|+.+-...++-.+... .+..
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s 579 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRS 579 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHH
Confidence 2 34567788888888899999998887543221110 01111222333344455555554444444321 1111
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH-H----HCCCCCCHHHHHHH
Q 006640 320 IFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDM-G----KAGIKPDAHAYSIL 394 (637)
Q Consensus 320 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~----~~~~~~~~~~~~~l 394 (637)
.+... ..+...|..+|.++.+.. |.. .+-+.|....+....-.+.-+- . ..+..|+ ....
T Consensus 580 ~l~~~------l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~ 644 (829)
T KOG2280|consen 580 SLFMT------LRNQPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTA 644 (829)
T ss_pred HHHHH------HHhchhhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHH
Confidence 11111 122344555555544321 111 1222232222222222221111 0 0122222 2333
Q ss_pred HHHHHHcCCHHH----------HHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006640 395 AKGYVREQEPEK----------AEELLMTMIE-SGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFET 463 (637)
Q Consensus 395 ~~~~~~~g~~~~----------A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 463 (637)
...+.+.....- -+++.+.+.. .+..-.-.+.+--+..+...|+..+|.++-.+..- ||...|..
T Consensus 645 a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wL 720 (829)
T KOG2280|consen 645 ANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWL 720 (829)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHHH
Confidence 444444433211 1222222222 12223334566667778889999999988777643 78889988
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006640 464 LMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
-+.+++..+++++-.++-++++. +.-|.-.+.+|.++|+.+||.+++.++.
T Consensus 721 k~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 721 KLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred HHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 89999999999887766555431 2345558889999999999999998763
No 257
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.10 E-value=1.4 Score=41.91 Aligned_cols=155 Identities=12% Similarity=-0.004 Sum_probs=109.9
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCh
Q 006640 117 LTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKES---GLTPTTSTYNTLIKGYGIAGKP 193 (637)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~ 193 (637)
.-..|+..+|-..++++++. .|.|...+...=.+|.-.|+...-...++++... +++-.+++-..+.-++..+|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34567888888888888875 4778888888888888999988888888888754 2222233334455566788999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHH
Q 006640 194 EESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPD---VVTYNTIATAYAQNGEADQAEEV 270 (637)
Q Consensus 194 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~ 270 (637)
++|.+.-++..+.+ +.|...-.++...+--.|+..++.+...+-...=-..+ ..-|=...-.+...+.++.|+++
T Consensus 192 ~dAEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99999999888765 56777778888888888999999888765432210111 12233344456677899999999
Q ss_pred HHHH
Q 006640 271 IVEM 274 (637)
Q Consensus 271 ~~~~ 274 (637)
|+.-
T Consensus 270 yD~e 273 (491)
T KOG2610|consen 270 YDRE 273 (491)
T ss_pred HHHH
Confidence 9764
No 258
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.94 E-value=14 Score=41.84 Aligned_cols=110 Identities=18% Similarity=0.160 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHH
Q 006640 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK--TFETLMWG 467 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~ 467 (637)
+|.+..+-+...+.+++|.-.|+..-+ ..-.+.+|..+|+|++|+.+..++... -|.. +-..|..-
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~ 1008 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSR 1008 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHH
Confidence 334444444555666666666655421 122355677777788877777766531 1222 22556777
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 468 YSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 468 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
+...++.-+|-++..+-.. .|. ..+..|+++-.+++|.+.....
T Consensus 1009 L~e~~kh~eAa~il~e~~s---d~~-----~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1009 LVEQRKHYEAAKILLEYLS---DPE-----EAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHcccchhHHHHHHHHhc---CHH-----HHHHHHhhHhHHHHHHHHHHhc
Confidence 7778888887777655432 222 2344556666667776665554
No 259
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.85 E-value=1.3 Score=41.07 Aligned_cols=83 Identities=18% Similarity=0.354 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006640 123 FNSIHSIMSQVEENGMDPDSIFFNAVINAFSESG----------------NMEEAMDTFWKMKESGLTPTTSTYNTLIKG 186 (637)
Q Consensus 123 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 186 (637)
.+-.-..++.|.+.|+..|..+|+.|+..+-+-. +-+-+++++++|...|+.||..+-..|+.+
T Consensus 88 veFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~ 167 (406)
T KOG3941|consen 88 VEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNA 167 (406)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHH
Confidence 3444444455555555556556655555443321 223456666777767776776666666666
Q ss_pred HHhcCCh-HHHHHHHHHHHh
Q 006640 187 YGIAGKP-EESVKLLDLMSR 205 (637)
Q Consensus 187 ~~~~g~~-~~A~~~~~~m~~ 205 (637)
+.+.+.. .+..++.-.|.+
T Consensus 168 FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 168 FGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred hccccccHHHHHHHHHhhhh
Confidence 6655543 334444445544
No 260
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.70 E-value=0.27 Score=31.69 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 006640 180 YNTLIKGYGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 180 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (637)
|..+...|...|++++|.++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 261
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.66 E-value=5.6 Score=36.40 Aligned_cols=199 Identities=16% Similarity=0.072 Sum_probs=116.9
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 006640 284 RTCGIIISGYCKEGKIKEALRFARTMKEY-GVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMN- 361 (637)
Q Consensus 284 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~- 361 (637)
.........+...+.+..+...+...... ........+......+...+.+..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44445555555566666666555555431 113334444455555555555666666666655543222 111222222
Q ss_pred HHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 006640 362 AWSTAGFMDKCKEIFDDMGKAGI--KPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHP-NVVIFTTIISGWCSDGS 438 (637)
Q Consensus 362 ~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~ 438 (637)
.+...|+++.+...+........ ......+......+...++.+.+...+.+..... +. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 56777777777777777755221 1233344444444667778888888888877653 33 36677777778888888
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 439 MDRAIEVFDKMCEHGVSPN-LKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 439 ~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
.+.|...+....... |+ ...+..+...+...|..+++...+.....
T Consensus 218 ~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888887643 33 34455555555566677888877777655
No 262
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.34 E-value=13 Score=39.77 Aligned_cols=178 Identities=12% Similarity=0.065 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHhcCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHH
Q 006640 193 PEESVKLLDLMSREGNVKPNLRTYNVLVRA-----WCNEKNITEAWNVMHKMAA-------SGMKPDVVTYNTIATAYAQ 260 (637)
Q Consensus 193 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~-------~g~~~~~~~~~~li~~~~~ 260 (637)
...|.+.++...+.| +...-..+..+ +....+.+.|+.+|+.+.+ .| .......+..+|.+
T Consensus 228 ~~~a~~~~~~~a~~g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHHhhc----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 467888888887766 44443333333 3456788889888888866 44 33345566677766
Q ss_pred cC-----CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--H
Q 006640 261 NG-----EADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKE---GKIKEALRFARTMKEYGVHPNLVIFNLLIKGFV--E 330 (637)
Q Consensus 261 ~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~--~ 330 (637)
.. +.+.|..++.+..+.|. |+.... +...|... .+...|.++|......|. +....+.+++-... -
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGN-PDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGV 376 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCC-chHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCc
Confidence 43 56678888888777664 333322 33333222 356788888888877763 22222222211111 2
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 006640 331 IMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAG 383 (637)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 383 (637)
..+...|...+++.-+.+. |...--...+..+.. +..+.+.-.+..+...|
T Consensus 377 ~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 2355667777777766662 221212222223333 56666666655555544
No 263
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.23 E-value=3 Score=34.79 Aligned_cols=58 Identities=12% Similarity=-0.003 Sum_probs=25.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006640 79 MNSLIERGKPQEAQAIFNNLIEGGHK--PSLVTYTTLLAALTIQKRFNSIHSIMSQVEEN 136 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 136 (637)
.....+.|++++|++.|+.+..+-+. -...+-..++.++.+.++++.|...+++.++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 33444555555555555555443110 01223333444444455555555555444443
No 264
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.11 E-value=8.8 Score=37.09 Aligned_cols=128 Identities=16% Similarity=0.215 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--c----CCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCC---
Q 006640 371 KCKEIFDDMGKAGIKPDAHAYSILAKGYVR--E----QEPEKAEELLMTMIESGF---HPNVVIFTTIISGWCSDGS--- 438 (637)
Q Consensus 371 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~--- 438 (637)
+.+.+++.+.+.|+..+..+|-+....... . .....|..+++.|.+... .++...+..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344455555555555554444332222111 1 123456666666665421 2333344444333 2222
Q ss_pred -HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 439 -MDRAIEVFDKMCEHGVSPNLK--TFETLMWGYSEARQ--PWRAEEILQIMKAFGVHPQKSTFLLLA 500 (637)
Q Consensus 439 -~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~l~ 500 (637)
.+.+..+|+.+.+.|+..+.. ....++..+..... +.++.++++.+.+.|+++...+|..++
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 344555666666655544322 22222222221111 335566666666667776666665544
No 265
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.01 E-value=5.2 Score=34.16 Aligned_cols=52 Identities=10% Similarity=-0.040 Sum_probs=25.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 006640 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (637)
+.++.+++..+++.+.-..+. ....-..-...++..|++.+|+.+|+++...
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 445566666666665544322 1122222233344566666666666665543
No 266
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.98 E-value=1.3 Score=41.75 Aligned_cols=77 Identities=16% Similarity=0.198 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 006640 390 AYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCE-----HGVSPNLKTFETL 464 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~l 464 (637)
++..++..+..+|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|-..+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45556666666666777777666666654 55666667777777777777777666666543 3555555554444
Q ss_pred HHH
Q 006640 465 MWG 467 (637)
Q Consensus 465 ~~~ 467 (637)
..+
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
No 267
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.75 E-value=3.7 Score=39.23 Aligned_cols=154 Identities=11% Similarity=0.002 Sum_probs=111.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHH----HHHHHHHHhcCC
Q 006640 153 SESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTY----NVLVRAWCNEKN 228 (637)
Q Consensus 153 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~----~~li~~~~~~g~ 228 (637)
-..|+..+|-..++++.+.- +.|..++...=.+|.-.|+.+.-...++++...- .+|...| ..+.-++...|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHHHhcc
Confidence 45688888888899988764 4478888888889999999999999999987652 2444333 344455668999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHHcCCHHHHHHH
Q 006640 229 ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPN---GRTCGIIISGYCKEGKIKEALRF 305 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~ 305 (637)
+++|++.-++..+.+ +.|...-.++...+.-.|++.++.+...+-...--..+ ..-|-...-.+...+.++.|+.+
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999999998775 45677777888888889999999988765432211111 12233334456677999999999
Q ss_pred HHHHH
Q 006640 306 ARTMK 310 (637)
Q Consensus 306 ~~~~~ 310 (637)
|+.-+
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 98754
No 268
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.69 E-value=6 Score=34.05 Aligned_cols=54 Identities=11% Similarity=0.226 Sum_probs=26.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 006640 153 SESGNMEEAMDTFWKMKESGLTPTTS-TYNTLIKGYGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 153 ~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (637)
+..+..++|+..|..+.+.|..--++ ....+.....+.|+...|+..|+++-..
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 34455566666666666554331111 1122233344556666666666665543
No 269
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.53 E-value=2.5 Score=39.38 Aligned_cols=98 Identities=16% Similarity=0.144 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CCCHHHHHHHH
Q 006640 144 FFNAVINAFSESGNMEEAMDTFWKMKESGLT--PTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNV-KPNLRTYNVLV 220 (637)
Q Consensus 144 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~~li 220 (637)
.|+.-+.. .+.|++..|...|...++..+. -....+--|...+...|+++.|..+|..+.+...- +.-..++..|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45555543 3566677777777777765422 11233445677777777777777777777664321 12246666667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 006640 221 RAWCNEKNITEAWNVMHKMAAS 242 (637)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~~~~~ 242 (637)
.+..+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777777777777777777665
No 270
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.45 E-value=9 Score=35.49 Aligned_cols=53 Identities=23% Similarity=0.211 Sum_probs=23.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHHcCCHHHHHHHHH
Q 006640 254 IATAYAQNGEADQAEEVIVEMEHNGVQPNG---RTCGIIISGYCKEGKIKEALRFAR 307 (637)
Q Consensus 254 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~ 307 (637)
+.+.|.+.|.+..|..-+++|++. .+.+. ..+-.+..+|...|-.++|.+.-.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 344455555555555555555544 21111 122333444445555554444433
No 271
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.44 E-value=7.7 Score=34.74 Aligned_cols=162 Identities=15% Similarity=0.125 Sum_probs=88.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHH
Q 006640 139 DPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNV 218 (637)
Q Consensus 139 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 218 (637)
|.-+.+||.|.--+...|+++.|.+.|+...+.++.-+-...|.-|..| -.|++.-|.+-|...-+.+.-.|-...|.-
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY 174 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQDDPNDPFRSLWLY 174 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhcCCCChHHHHHHH
Confidence 3346788888888889999999999999998876543333333334333 468888888877777665422222233333
Q ss_pred HHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCC-------hhhHHHH
Q 006640 219 LVRAWCNEKNITEAWNVM-HKMAASGMKPDVVTYNT-IATAYAQNGEADQAEEVIVEMEHNGVQPN-------GRTCGII 289 (637)
Q Consensus 219 li~~~~~~g~~~~A~~~~-~~~~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~l 289 (637)
+.. ..-+..+|..-+ ++... .|..-|.. ++..|...=..+. +++++... -..+ ..+|--+
T Consensus 175 l~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~e~---l~~~~~a~-a~~n~~~Ae~LTEtyFYL 243 (297)
T COG4785 175 LNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISEET---LMERLKAD-ATDNTSLAEHLTETYFYL 243 (297)
T ss_pred HHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccHHH---HHHHHHhh-ccchHHHHHHHHHHHHHH
Confidence 322 334455555433 33332 23333332 3333332222222 22222221 1111 2345556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 006640 290 ISGYCKEGKIKEALRFARTMKEY 312 (637)
Q Consensus 290 i~~~~~~g~~~~A~~~~~~~~~~ 312 (637)
..-|...|+.++|..+|+-.+..
T Consensus 244 ~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 244 GKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHhccccHHHHHHHHHHHHHH
Confidence 66667777777777777776643
No 272
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.29 E-value=11 Score=36.21 Aligned_cols=123 Identities=14% Similarity=0.167 Sum_probs=60.4
Q ss_pred HHcCChhHHHHHHHHHHhCC--CCCCHH-----HHHHHHHHHHhcC-ChhHHHHHHHHHHHc--------CCCCCH----
Q 006640 83 IERGKPQEAQAIFNNLIEGG--HKPSLV-----TYTTLLAALTIQK-RFNSIHSIMSQVEEN--------GMDPDS---- 142 (637)
Q Consensus 83 ~~~g~~~~A~~~~~~~~~~~--~~~~~~-----~~~~ll~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~---- 142 (637)
.+.|+.+.|..++.+..... ..|+.. .+..+.......+ +++.|...+++..+. ...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788888888888876532 122221 1111222233444 666666666654432 112222
Q ss_pred -HHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 006640 143 -IFFNAVINAFSESGNME---EAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 143 -~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (637)
.+...++.+|...+..+ +|..+++.+...... .+.++..-+..+.+.++.+++.+.+.+|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 24445555555555433 344444444332211 2334444445555556666666666666654
No 273
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.13 E-value=7.1 Score=33.61 Aligned_cols=125 Identities=13% Similarity=0.102 Sum_probs=60.0
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-HHHHHH--HHHHhcCC
Q 006640 82 LIERGKPQEAQAIFNNLIEGGHKPSLV-TYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSI-FFNAVI--NAFSESGN 157 (637)
Q Consensus 82 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li--~~~~~~g~ 157 (637)
+++.|..++|+.-|..+...|...-++ ..-.+....+..|+...|...|+++-.....|-.. -...|= -.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 345666777777777776655432111 11122233445566666666666655432222221 111111 12334455
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 006640 158 MEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 158 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (637)
+++...-.+-+...+-+.-...-..|.-+-.+.|++..|...|..+...
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 5555555544443333323334445555555666666666666665543
No 274
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.05 E-value=2 Score=40.59 Aligned_cols=81 Identities=10% Similarity=0.215 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCCCHHHHH
Q 006640 142 SIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSRE----GNVKPNLRTYN 217 (637)
Q Consensus 142 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~ 217 (637)
..++..++..+..+|+.+.+...++++....+. +...|..++.+|.+.|+...|+..|+++... -++.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 345666777777777778887777777776554 6677777888888888888887777776541 13667666666
Q ss_pred HHHHHH
Q 006640 218 VLVRAW 223 (637)
Q Consensus 218 ~li~~~ 223 (637)
......
T Consensus 232 ~y~~~~ 237 (280)
T COG3629 232 LYEEIL 237 (280)
T ss_pred HHHHHh
Confidence 666553
No 275
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.83 E-value=6 Score=33.06 Aligned_cols=82 Identities=10% Similarity=0.090 Sum_probs=60.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006640 110 YTTLLAALTIQKRFNSIHSIMSQVEENGM--DPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGY 187 (637)
Q Consensus 110 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 187 (637)
+-.-.....+.|++++|.+.|+.+..+-. +-.....-.|+.+|.+.++++.|...+++.++..+......|-..+.++
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 33344455688999999999999987621 2234567788999999999999999999999987654445565555555
Q ss_pred HhcC
Q 006640 188 GIAG 191 (637)
Q Consensus 188 ~~~g 191 (637)
+...
T Consensus 93 ~~~~ 96 (142)
T PF13512_consen 93 SYYE 96 (142)
T ss_pred HHHH
Confidence 4433
No 276
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.78 E-value=8.4 Score=37.24 Aligned_cols=129 Identities=13% Similarity=0.168 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cC----CHHHHHHHHHHHHHCCC---CCChhhHHHHHHHHHHcCC-
Q 006640 229 ITEAWNVMHKMAASGMKPDVVTYNTIATAYAQ--NG----EADQAEEVIVEMEHNGV---QPNGRTCGIIISGYCKEGK- 298 (637)
Q Consensus 229 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~- 298 (637)
+++.+.+++.|.+.|+..+..+|.+....... .. ....|..+|+.|.+..+ .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34455667777777777666655543322222 11 24566777777766532 1223334444332 2222
Q ss_pred ---HHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCC--HhHHHHHHHHHHhCCCCCCHHHHHHH
Q 006640 299 ---IKEALRFARTMKEYGVHPNL--VIFNLLIKGFVEIMD--RDGVDEVLALMKEFRVNPDVITYSTI 359 (637)
Q Consensus 299 ---~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l 359 (637)
.+.+..+|+.+.+.|+..+- .....++..+..... ...+.++++.+.+.++++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 24455566666665544422 222222222111111 12444555555555555444444433
No 277
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.08 E-value=1.7 Score=37.69 Aligned_cols=60 Identities=20% Similarity=0.209 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCC-----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006640 440 DRAIEVFDKMCEHGVSPNL-KTFETLMWGYSEARQ-----------PWRAEEILQIMKAFGVHPQKSTFLLLAEAR 503 (637)
Q Consensus 440 ~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 503 (637)
++|+.-|++.+. +.|+. .++..+..++...+. +++|.+.|++..+ .+|+.+.|..-+...
T Consensus 52 edAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 52 EDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 344444555555 44664 477777777765542 3445555555555 678888887666554
No 278
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.06 E-value=15 Score=35.29 Aligned_cols=163 Identities=15% Similarity=0.108 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHcCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 354 ITYSTIMNAWSTAGFMD---KCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTII 430 (637)
Q Consensus 354 ~~~~~li~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 430 (637)
.++..++.+|...+..+ +|..+++.+... .+..+.++..-+..+.+.++.+.+.+++.+|+..- .-....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 34566677777766544 455555566443 22235555555666667888888888888888752 21334444444
Q ss_pred HHH---HhcCCHHHHHHHHHHHHHCCCCCCHH-HH----HHHHHHHHhcCC------hhHHHHHHHHHHH-CCCCCCHHH
Q 006640 431 SGW---CSDGSMDRAIEVFDKMCEHGVSPNLK-TF----ETLMWGYSEARQ------PWRAEEILQIMKA-FGVHPQKST 495 (637)
Q Consensus 431 ~~~---~~~g~~~~A~~~~~~m~~~~~~p~~~-~~----~~l~~~~~~~g~------~~~A~~~~~~m~~-~g~~p~~~~ 495 (637)
..+ ... ....|...++.+....+.|... .. ...+......++ .+...+++....+ .+.+.+..+
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 443 333 3456666666666443444442 11 111112222221 3333444443322 223333333
Q ss_pred HHHH-------HHHHHHcCCHHHHHHHHHHH
Q 006640 496 FLLL-------AEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 496 ~~~l-------~~~~~~~g~~~eA~~~~~~~ 519 (637)
-.++ +..+.+++++++|.++++-.
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 2222 34567888999999998754
No 279
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.06 E-value=22 Score=37.14 Aligned_cols=389 Identities=12% Similarity=0.089 Sum_probs=223.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 106 SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDS-IFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLI 184 (637)
Q Consensus 106 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 184 (637)
+-..|..++.---...+.+.+..+++.++.. -|.. -.|......=.+.|..+.+.++|++-+. +++.+...|....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 4445666664444444556777777777753 3444 3566677767788999999999999887 4666778888777
Q ss_pred HHHH-hcCChHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--
Q 006640 185 KGYG-IAGKPEESVKLLDLMSREGNV-KPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQ-- 260 (637)
Q Consensus 185 ~~~~-~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-- 260 (637)
..+. ..|+.+...+.|+.....-+. -.+...|-..|..-..++++.....++++.++. ....++..-.-|.+
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHH
Confidence 6554 457788888888888764321 234677888898888999999999999998864 22223222222211
Q ss_pred -------cCCHHHHHHHHHHHHH--------------------CCCCCCh--hhHHHHH-------HHHHHcCCHHHHHH
Q 006640 261 -------NGEADQAEEVIVEMEH--------------------NGVQPNG--RTCGIII-------SGYCKEGKIKEALR 304 (637)
Q Consensus 261 -------~g~~~~A~~~~~~~~~--------------------~~~~~~~--~~~~~li-------~~~~~~g~~~~A~~ 304 (637)
....+++.++-..... .+-+.+. ...+.+. .+|-..-...+...
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~ 276 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRW 276 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 1223333333222211 0000000 0011111 11212222233333
Q ss_pred HHHHHHHcC---C----CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 006640 305 FARTMKEYG---V----HPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFD 377 (637)
Q Consensus 305 ~~~~~~~~~---~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 377 (637)
.|+.-++.. + +++..+|..-+.--...|+.+.+.-+++...-- +..-...|-..+.-....|+.+-|..++.
T Consensus 277 ~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~ 355 (577)
T KOG1258|consen 277 GFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLA 355 (577)
T ss_pred hhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHH
Confidence 333333221 1 234568888888888899999888888876431 11223344444444455588888888877
Q ss_pred HHHHCCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHHHC
Q 006640 378 DMGKAGIKPDAHAYSILAKGY-VREQEPEKAEELLMTMIESGFHPNVV-IFTTIISGWCSDGSMDRAI---EVFDKMCEH 452 (637)
Q Consensus 378 ~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~---~~~~~m~~~ 452 (637)
...+-..+ +......+-..+ -..|+++.|..+++.+.+.- |+.+ .-..-+....+.|+.+.+. .++....+.
T Consensus 356 ~~~~i~~k-~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~ 432 (577)
T KOG1258|consen 356 RACKIHVK-KTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG 432 (577)
T ss_pred hhhhhcCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc
Confidence 76554332 322222333333 35679999999999998762 4433 2233344556778888777 333333322
Q ss_pred CCCCCH--HHHHHHHH-HHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC
Q 006640 453 GVSPNL--KTFETLMW-GYSEARQPWRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATG 507 (637)
Q Consensus 453 ~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g 507 (637)
...+.. ..+.-..+ .+.-.++.+.|..++.++.+ +.|+ ...|..+++.+...+
T Consensus 433 ~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~--~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 433 KENNGILEKLYVKFARLRYKIREDADLARIILLEAND--ILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh--cCCccHHHHHHHHHHHHhCC
Confidence 111111 11112222 23346788889999988876 4444 456777777766665
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.87 E-value=0.58 Score=28.50 Aligned_cols=24 Identities=17% Similarity=0.409 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 006640 426 FTTIISGWCSDGSMDRAIEVFDKM 449 (637)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m 449 (637)
|..|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555566666666666666553
No 281
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.87 E-value=28 Score=37.97 Aligned_cols=142 Identities=15% Similarity=0.193 Sum_probs=94.6
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006640 80 NSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNME 159 (637)
Q Consensus 80 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 159 (637)
+.+.+.|++++|..-|-+-+.. +.| ..++.-+....+...--..++.+.+.|+ .+...-+.|+.+|.+.++.+
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchH
Confidence 3445789999999888776632 222 3345555555566666677888888884 56666778999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006640 160 EAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKM 239 (637)
Q Consensus 160 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 239 (637)
.-.++.+... .|.. .+-....+..+.+.+-.++|..+-.+... .......+ +-..+++++|++++..+
T Consensus 449 kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~------he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 449 KLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK------HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc------CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 8777766654 2211 12245567777788888888777665432 23333333 34578899999998876
Q ss_pred H
Q 006640 240 A 240 (637)
Q Consensus 240 ~ 240 (637)
.
T Consensus 517 p 517 (933)
T KOG2114|consen 517 P 517 (933)
T ss_pred C
Confidence 3
No 282
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.73 E-value=0.34 Score=29.11 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=11.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHH
Q 006640 420 HPNVVIFTTIISGWCSDGSMDRA 442 (637)
Q Consensus 420 ~~~~~~~~~li~~~~~~g~~~~A 442 (637)
|.|..+|+.+...|...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 34444555555555555555444
No 283
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=90.69 E-value=21 Score=36.37 Aligned_cols=77 Identities=8% Similarity=0.044 Sum_probs=40.8
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 006640 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAA-LTIQKRFNSIHSIMSQVEENGMDPDSIFFNAV 148 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 148 (637)
.|+..|..-+..+-+.+.+.+.-.+|.+|+... +.++..|-....- +-.+.+.+.|+.+|.+.++.+ +..+..|-..
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n-pdsp~Lw~ey 180 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN-PDSPKLWKEY 180 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC-CCChHHHHHH
Confidence 366666666666666666667777777766531 2233444333222 222233666777666666654 3334444433
No 284
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.62 E-value=0.68 Score=43.98 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=24.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHH
Q 006640 433 WCSDGSMDRAIEVFDKMCEHGVSP-NLKTFETLMWGYSEARQPWRAEEIL 481 (637)
Q Consensus 433 ~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 481 (637)
|.++|.+++|+..|...... .| |++++..-..+|.+..++..|..-.
T Consensus 107 yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC 154 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDC 154 (536)
T ss_pred hhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhH
Confidence 45555555555555555442 23 5555555555555555554444433
No 285
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.52 E-value=15 Score=34.16 Aligned_cols=52 Identities=15% Similarity=0.150 Sum_probs=24.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHH
Q 006640 430 ISGWCSDGSMDRAIEVFDKMCEHGVSPN---LKTFETLMWGYSEARQPWRAEEILQ 482 (637)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~ 482 (637)
..-|.+.|.+..|..-+++|.+. .+-. ...+-.+..+|.+.|..++|...-+
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 33455555555555555555553 1111 1233344445555555555555433
No 286
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.40 E-value=4 Score=36.02 Aligned_cols=95 Identities=15% Similarity=0.150 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCCHH----
Q 006640 424 VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK--TFETLMWGYSEARQPWRAEEILQIMKA---FGVHPQKS---- 494 (637)
Q Consensus 424 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~---- 494 (637)
..+..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...|++..+.....+... .|-.++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 356667777778888888888888777664444433 466677777777888777777666642 22222221
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006640 495 TFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 495 ~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
.|..+ .+...|++.+|-+.|-...
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHccC
Confidence 12222 2345677887777776654
No 287
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=90.31 E-value=8.9 Score=31.39 Aligned_cols=66 Identities=14% Similarity=0.190 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 006640 213 LRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGV 279 (637)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 279 (637)
.......+......|+-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344455555566666666666666666542 245666666666666677776666666666666665
No 288
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.72 E-value=0.89 Score=27.05 Aligned_cols=27 Identities=15% Similarity=0.370 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006640 425 IFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
+|..++.+|...|++++|+..|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444455555555555555555444
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.47 E-value=0.85 Score=27.75 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=16.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHH
Q 006640 75 MTKLMNSLIERGKPQEAQAIFNNLI 99 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~ 99 (637)
|+.|.+.|.+.|++++|+.+|++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566677777777777777776643
No 290
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.98 E-value=14 Score=31.94 Aligned_cols=98 Identities=15% Similarity=0.166 Sum_probs=42.9
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006640 96 NNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTP 175 (637)
Q Consensus 96 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 175 (637)
+.+.+.+++|+...+..++..+.+.|++..... ++..++-+|.......+-.+. +....+.++--+|..+
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR---- 87 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR---- 87 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH----
Confidence 334444556666666666666666665543332 333344444433332221111 1122233332233221
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006640 176 TTSTYNTLIKGYGIAGKPEESVKLLDLM 203 (637)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 203 (637)
=...+..++..+...|++-+|+++....
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0012444555555556666665555544
No 291
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.74 E-value=18 Score=32.60 Aligned_cols=63 Identities=11% Similarity=-0.101 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006640 177 TSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAA 241 (637)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 241 (637)
+.+||.|.--+...|+++.|.+.|+...+.+ |....+...-.-++.--|++.-|.+-|...-+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccC--CcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 3455555555566666666666666665543 11222222222222234555555554444443
No 292
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.26 E-value=1.3 Score=26.34 Aligned_cols=27 Identities=19% Similarity=-0.006 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 460 TFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 460 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
+|..+..++...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444455555555555555555443
No 293
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=88.06 E-value=54 Score=37.43 Aligned_cols=104 Identities=13% Similarity=0.002 Sum_probs=53.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCC
Q 006640 291 SGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVIT--YSTIMNAWSTAGF 368 (637)
Q Consensus 291 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~ 368 (637)
+.+...+.+++|.-.|+..-+ ..-.+.+|..+|+|.++..+..++... .|... -..|+.-+...++
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~k 1014 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRK 1014 (1265)
T ss_pred HHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHccc
Confidence 333345555555555544421 122345566667777776666655331 12222 2455566666677
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 369 MDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTM 414 (637)
Q Consensus 369 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 414 (637)
.-+|-++..+.... ..-.+..|++...|++|..+-...
T Consensus 1015 h~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1015 HYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred chhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 66666666655432 112334455666666666655443
No 294
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.99 E-value=32 Score=37.43 Aligned_cols=224 Identities=14% Similarity=0.096 Sum_probs=93.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHH---
Q 006640 290 ISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR-VNPDVITYSTIMNAWST--- 365 (637)
Q Consensus 290 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~--- 365 (637)
...+.-.|+++.|++++-.. .+...+.+.+...+.-| |-+......-..+.... -.+...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIaL~~~---gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIALAYY---GLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT---T------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHHHHHc---CCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 45566789999999988762 11233444444443332 22221111112222211 11222567788888876
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHcCCHHHHH-----------HHHHH-HHHCCCCC-CHHHH---HH
Q 006640 366 AGFMDKCKEIFDDMGKAGIKPDAHAYSILA-KGYVREQEPEKAE-----------ELLMT-MIESGFHP-NVVIF---TT 428 (637)
Q Consensus 366 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~-----------~~~~~-~~~~~~~~-~~~~~---~~ 428 (637)
..+...|.+.+--+....-+.....+...+ ......++++.-+ -++++ ..=.++.. +.... ..
T Consensus 340 ~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~ 419 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQ 419 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHH
Confidence 356777877777665432111122222222 2222333322211 11111 00001122 22222 22
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCC-----------hhHHHHHHHHHHHCC-----CCC
Q 006640 429 IISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWG-YSEARQ-----------PWRAEEILQIMKAFG-----VHP 491 (637)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~-----------~~~A~~~~~~m~~~g-----~~p 491 (637)
...-+...|++++|+.+|.-+.+.. .=....+.++.- ...... ...|..+.+.....+ +.+
T Consensus 420 ~A~~~e~~g~~~dAi~Ly~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~ 497 (613)
T PF04097_consen 420 AAREAEERGRFEDAILLYHLAEEYD--KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSR 497 (613)
T ss_dssp HHHHHHHCT-HHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-H
T ss_pred HHHHHHHCCCHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccH
Confidence 3334667899999999888765421 011234444432 222222 223444433332111 222
Q ss_pred C-HHHHHHHHHH-----HHHcCCHHHHHHHHHHHh
Q 006640 492 Q-KSTFLLLAEA-----RRATGLTKEAKRILSKIK 520 (637)
Q Consensus 492 ~-~~~~~~l~~~-----~~~~g~~~eA~~~~~~~~ 520 (637)
. ..++..|+++ +.+.|++++|.+.++++.
T Consensus 498 ~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 498 KNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 2 3355555543 668899999999999985
No 295
>PRK09687 putative lyase; Provisional
Probab=87.91 E-value=26 Score=33.63 Aligned_cols=120 Identities=14% Similarity=0.127 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 352 DVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQ-EPEKAEELLMTMIESGFHPNVVIFTTII 430 (637)
Q Consensus 352 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li 430 (637)
+..+-...+.++.+.++ +.++..+-.+.+ .++..+-...+.++.+.+ .-..+...+..+.. .+|..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 33344444444444443 234444444433 123333333333333322 12234444444432 23444444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006640 431 SGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMK 485 (637)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 485 (637)
.++.+.|+ ..|+..+-+..+.+ + .....+.++...|.. +|...+..+.
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHH
Confidence 55555554 33444444443321 1 122344444454443 3444444444
No 296
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.85 E-value=11 Score=33.24 Aligned_cols=87 Identities=16% Similarity=0.115 Sum_probs=40.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006640 398 YVREQEPEKAEELLMTMIESGFHPNV-----VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEAR 472 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 472 (637)
+.+.|++++|..-|.+.+..- ++.. +.|..-..++.+.+.++.|+.-..+.++.+.. ....+..-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence 455566666666665555541 2211 22333333455555555555555555553321 1122333344455555
Q ss_pred ChhHHHHHHHHHHH
Q 006640 473 QPWRAEEILQIMKA 486 (637)
Q Consensus 473 ~~~~A~~~~~~m~~ 486 (637)
++++|++-|+++.+
T Consensus 183 k~eealeDyKki~E 196 (271)
T KOG4234|consen 183 KYEEALEDYKKILE 196 (271)
T ss_pred hHHHHHHHHHHHHH
Confidence 55555555555544
No 297
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.49 E-value=1.8 Score=25.56 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 006640 495 TFLLLAEARRATGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 495 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 523 (637)
.+..+..++...|++++|++.+++.....
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 45556666666666666666666654443
No 298
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.41 E-value=10 Score=33.53 Aligned_cols=58 Identities=14% Similarity=0.181 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 252 NTIATAYAQNGEADQAEEVIVEMEHNGVQPN--GRTCGIIISGYCKEGKIKEALRFARTM 309 (637)
Q Consensus 252 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 309 (637)
..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|......+++..+.....+.
T Consensus 40 ~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 40 EDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3344444444444444444444443322111 122333344444444444444443333
No 299
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.27 E-value=1.6 Score=25.79 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006640 426 FTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
|..+...+...|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 300
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.25 E-value=52 Score=35.33 Aligned_cols=178 Identities=16% Similarity=0.155 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHHHh-------cCCCCCCHHHHHHHHHHHHh
Q 006640 158 MEEAMDTFWKMKESGLTPTTSTYNTLIKG-----YGIAGKPEESVKLLDLMSR-------EGNVKPNLRTYNVLVRAWCN 225 (637)
Q Consensus 158 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~~~~~~~~~~~~~li~~~~~ 225 (637)
...|.+.++...+.| +......+..+ +....+.+.|+..|..+.+ .+ ......-+..+|.+
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~----~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG----LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc----CCccccHHHHHHhc
Confidence 467888888888876 44444333333 3455689999999998876 33 33456677777776
Q ss_pred cC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH----
Q 006640 226 EK-----NITEAWNVMHKMAASGMKPDVVTYNTIATAYAQ-NGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCK---- 295 (637)
Q Consensus 226 ~g-----~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 295 (637)
.. +.+.|+.++.+.-+.| .|+.......+..... ..+...|.++|....+.|.. ..+-.+..+|..
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGV 376 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCc
Confidence 43 6778999999988877 3444433222222222 24678999999999888752 223333333322
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC
Q 006640 296 EGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFR 348 (637)
Q Consensus 296 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 348 (637)
..+.+.|..++.+.-+.| .|....-...+..+.. +..+.+.-.+..+.+.+
T Consensus 377 ~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 346888999999998877 3332222222233333 66666666666655554
No 301
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.85 E-value=20 Score=30.19 Aligned_cols=51 Identities=10% Similarity=-0.094 Sum_probs=26.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 006640 155 SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 155 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (637)
.++.+++..+++.|.-..+. ....-..-.-.++..|++++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 55666666666666554322 1111222223345566666666666666554
No 302
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.80 E-value=0.02 Score=48.81 Aligned_cols=85 Identities=15% Similarity=0.255 Sum_probs=55.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006640 78 LMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGN 157 (637)
Q Consensus 78 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 157 (637)
++..+.+.+.+......++.+...+...+....+.++..|++.++.+....+++ ..+.+-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcch
Confidence 466777778888888888888876555667788888888888877677666655 1112334456666666777
Q ss_pred HHHHHHHHHHHH
Q 006640 158 MEEAMDTFWKMK 169 (637)
Q Consensus 158 ~~~A~~~~~~m~ 169 (637)
++.|.-++.++.
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 766666665543
No 303
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.69 E-value=23 Score=30.73 Aligned_cols=131 Identities=10% Similarity=0.143 Sum_probs=67.0
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 006640 129 IMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGN 208 (637)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 208 (637)
.++.+.+.+++++...+..++..+.+.|++.. +..+.+.++-+|.......+-.+ .+....+.++=-+|.++-
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkRL- 88 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKRL- 88 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHHh-
Confidence 34445556777777778888888877777554 33344444445554444333222 123333444444443320
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 209 VKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEM 274 (637)
Q Consensus 209 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 274 (637)
...+..++..+...|++-+|+++.+..... +......++.+..+.++...-..+|+-.
T Consensus 89 ----~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 89 ----GTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred ----hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 013455566666777777777776654322 1122233455555555544444444433
No 304
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.98 E-value=24 Score=30.27 Aligned_cols=52 Identities=21% Similarity=0.213 Sum_probs=31.4
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006640 399 VREQEPEKAEELLMTMIESGFHPNVVIF-TTIISGWCSDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 399 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (637)
.+.++.+++..++..+.-. .|..... ..-...+...|++.+|+.+|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 4566777777777776654 3433222 22233456777777777777777654
No 305
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.72 E-value=13 Score=35.39 Aligned_cols=48 Identities=15% Similarity=0.277 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006640 368 FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMI 415 (637)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 415 (637)
+.++++.++..=+..|+-||.++++.+++.+.+.+++.+|..+...|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344555555544555555555555555555555555555555544443
No 306
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=84.33 E-value=68 Score=35.00 Aligned_cols=439 Identities=10% Similarity=0.070 Sum_probs=215.5
Q ss_pred cchhHHHHHHHHHHHcCChhHHHHHHHHHHh-CCCCC--CHHHHHHHHHHHH-hcCChhHHHHHHHHHHHcCCCCCHH--
Q 006640 70 RTVRSMTKLMNSLIERGKPQEAQAIFNNLIE-GGHKP--SLVTYTTLLAALT-IQKRFNSIHSIMSQVEENGMDPDSI-- 143 (637)
Q Consensus 70 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~--~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-- 143 (637)
..+..|-.||.. |++.++.+.+ ...+| ...++..+...+. ...+++.|...+.+.....-.++..
T Consensus 28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 345556566544 4555666663 23333 2345556666665 5678999999998875543222221
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHhcCC--CCCCH
Q 006640 144 ---FFNAVINAFSESGNMEEAMDTFWKMKESG----LTPTTSTYNTL-IKGYGIAGKPEESVKLLDLMSREGN--VKPNL 213 (637)
Q Consensus 144 ---~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~ 213 (637)
....++..+.+.+... |....++..+.- ..+-...+..+ +..+...++...|++.++.+..... ..|-.
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 2234456666665555 888888766531 11112223333 3333344789999999988866432 12334
Q ss_pred HHHHHHHHHHH--hcCCHHHHHHHHHHHHHCC---------CCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHH----
Q 006640 214 RTYNVLVRAWC--NEKNITEAWNVMHKMAASG---------MKPDVVTYNTIATAYA--QNGEADQAEEVIVEMEH---- 276 (637)
Q Consensus 214 ~~~~~li~~~~--~~g~~~~A~~~~~~~~~~g---------~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~---- 276 (637)
.++..++.+.. ..+..+++.+.++.+.... ..|-..+|..+++.++ ..|+++.+...++++..
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~ 257 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDE 257 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 44455555443 4565677777777664321 1234566776666554 56777677766655432
Q ss_pred ---CC-C---C-------------------CChhhH---------HHHHH--HHHHcCCHHHHHHHHH-------HHH-H
Q 006640 277 ---NG-V---Q-------------------PNGRTC---------GIIIS--GYCKEGKIKEALRFAR-------TMK-E 311 (637)
Q Consensus 277 ---~~-~---~-------------------~~~~~~---------~~li~--~~~~~g~~~~A~~~~~-------~~~-~ 311 (637)
.. . . +....| .-++. .++..+..++|.++++ +.. .
T Consensus 258 ~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~ 337 (608)
T PF10345_consen 258 IKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIK 337 (608)
T ss_pred hhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhcc
Confidence 10 0 0 111111 11122 2223344435544444 444 1
Q ss_pred cCCCC--C------HHHHHHHHHH---------HHHcCCHhHHHHHHHHHHhCCC-CCC-------HHHHHHHHHHHHHc
Q 006640 312 YGVHP--N------LVIFNLLIKG---------FVEIMDRDGVDEVLALMKEFRV-NPD-------VITYSTIMNAWSTA 366 (637)
Q Consensus 312 ~~~~~--~------~~~~~~ll~~---------~~~~~~~~~a~~~~~~~~~~~~-~~~-------~~~~~~li~~~~~~ 366 (637)
....+ . ...|...+.. ..-.+++..+...++.+.+... .|+ +.++....-.+...
T Consensus 338 ~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~ 417 (608)
T PF10345_consen 338 SPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQST 417 (608)
T ss_pred CCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHc
Confidence 11111 1 1122222222 2345788889888888765321 111 22222333344567
Q ss_pred CChHHHHHHHH--------HHHHCCCCCCHHHHHHH--HHHHHHcC--CHHH--HHHHHHHHHHC---CCCCCHHHHHHH
Q 006640 367 GFMDKCKEIFD--------DMGKAGIKPDAHAYSIL--AKGYVREQ--EPEK--AEELLMTMIES---GFHPNVVIFTTI 429 (637)
Q Consensus 367 g~~~~a~~~~~--------~~~~~~~~~~~~~~~~l--~~~~~~~g--~~~~--A~~~~~~~~~~---~~~~~~~~~~~l 429 (637)
|+++.|...|. .....+...+..++..| +..+...+ ..++ +.++++.+... ....+..++..+
T Consensus 418 g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~ 497 (608)
T PF10345_consen 418 GDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCL 497 (608)
T ss_pred CCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHH
Confidence 99999999998 44444444444444332 22222222 2233 66677665432 112233445444
Q ss_pred H-HHHHhcC--CHHHHHHHHHHHHH-C--CCCCCHH---HHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCC--HHHHH
Q 006640 430 I-SGWCSDG--SMDRAIEVFDKMCE-H--GVSPNLK---TFETLMWGYSEARQPWRAEEILQIMKA-FGVHPQ--KSTFL 497 (637)
Q Consensus 430 i-~~~~~~g--~~~~A~~~~~~m~~-~--~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~p~--~~~~~ 497 (637)
+ .++...- ...++...+.+..+ . ....+.. +++.+...+. .|...|.......... ..-.|| ...|.
T Consensus 498 ~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~ 576 (608)
T PF10345_consen 498 VLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWH 576 (608)
T ss_pred HHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 3 3333211 12244444433321 1 1111222 2232222333 6777776555443321 111233 33442
Q ss_pred -----HHHHHHHHcCCHHHHHHHHHHH
Q 006640 498 -----LLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 498 -----~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
.+.+.+...|+.++|.....+.
T Consensus 577 ~v~~~~l~~~~~~~G~~~ka~~~~~~~ 603 (608)
T PF10345_consen 577 LVASGMLADSYEVQGDRDKAEEARQQL 603 (608)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 3445688899999999887665
No 307
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.13 E-value=4.6 Score=30.88 Aligned_cols=50 Identities=24% Similarity=0.274 Sum_probs=38.2
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 006640 473 QPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 473 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
+..+..+-++.+..+.+.|+.....+.+.+|.|.+++.-|.++++.++.+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44456666666667778888888888888888888888888888877644
No 308
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.74 E-value=2.5 Score=26.32 Aligned_cols=28 Identities=21% Similarity=0.434 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006640 73 RSMTKLMNSLIERGKPQEAQAIFNNLIE 100 (637)
Q Consensus 73 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 100 (637)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777776653
No 309
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=83.59 E-value=57 Score=33.52 Aligned_cols=78 Identities=10% Similarity=0.135 Sum_probs=39.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHC
Q 006640 93 AIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINA-FSESGNMEEAMDTFWKMKES 171 (637)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~ 171 (637)
.+|+....+ .+.|+..|..-+.-+-+.+.+.+...+|.+|+... |.++..|-....- |-..-+++.|..+|..-.+.
T Consensus 92 ~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 92 FLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred HHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 344444432 33466666666665555555666666666665543 3334444332222 22223366666666665554
Q ss_pred C
Q 006640 172 G 172 (637)
Q Consensus 172 ~ 172 (637)
+
T Consensus 170 n 170 (568)
T KOG2396|consen 170 N 170 (568)
T ss_pred C
Confidence 4
No 310
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.27 E-value=3.1 Score=25.88 Aligned_cols=26 Identities=12% Similarity=0.425 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006640 425 IFTTIISGWCSDGSMDRAIEVFDKMC 450 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~ 450 (637)
+++.+...|...|++++|+.++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45555555555566666665555554
No 311
>PRK09687 putative lyase; Provisional
Probab=83.14 E-value=45 Score=32.04 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=9.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 006640 429 IISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
.+.++...|+. +|+..+..+.+
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHHh
Confidence 34444444442 34444444443
No 312
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.66 E-value=34 Score=35.81 Aligned_cols=153 Identities=13% Similarity=0.090 Sum_probs=103.5
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006640 81 SLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEE 160 (637)
Q Consensus 81 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 160 (637)
.+.-.|+++.|-.++..+. ....+.+++-+.++|-.++|+++ .+|..-- .....+.|+++.
T Consensus 595 t~vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~i 655 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDI 655 (794)
T ss_pred HHhhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHH
Confidence 3345678877766554442 23456666667777777766653 3333221 233457889999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006640 161 AMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMA 240 (637)
Q Consensus 161 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 240 (637)
|.++..+.. +..-|..|..+..+.+++..|.+.|..... |..|+-.+...|+.+....+-....
T Consensus 656 A~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 656 AFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred HHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHH
Confidence 888776653 567799999999999999999999877643 5677777888888776666666666
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 241 ASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEM 274 (637)
Q Consensus 241 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 274 (637)
+.|. .|. -..+|...|+++++.+++..-
T Consensus 720 ~~g~-~N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 720 KQGK-NNL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hhcc-cch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 6663 232 233566789999998887554
No 313
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.48 E-value=34 Score=35.84 Aligned_cols=150 Identities=12% Similarity=0.141 Sum_probs=101.8
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 006640 119 IQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVK 198 (637)
Q Consensus 119 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 198 (637)
-.|+++.|..++..+. ....+.++..+.+.|..++|+.+- +|+... .....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHH
Confidence 3466766665443221 345667777788888877776542 232221 223357899999988
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006640 199 LLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNG 278 (637)
Q Consensus 199 ~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 278 (637)
+..+. .+..-|..|..+..+.+++..|.+.|..... |..|+-.+...|+-+....+-....+.|
T Consensus 659 la~e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 659 LAVEA-------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred HHHhh-------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 87654 3667799999999999999999999887654 4457777888888776666666666665
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 279 VQPNGRTCGIIISGYCKEGKIKEALRFARTM 309 (637)
Q Consensus 279 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 309 (637)
. .| .. .-+|...|+++++.+++..-
T Consensus 723 ~-~N-~A----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 723 K-NN-LA----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred c-cc-hH----HHHHHHcCCHHHHHHHHHhc
Confidence 4 23 22 23567789999998887655
No 314
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.33 E-value=21 Score=31.71 Aligned_cols=88 Identities=15% Similarity=0.104 Sum_probs=37.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006640 363 WSTAGFMDKCKEIFDDMGKAGIKPD----AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGS 438 (637)
Q Consensus 363 ~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 438 (637)
+...|++++|..-|...+..-.... ...|..-..++.+.+.++.|++--.+.++.+ +........-..+|.+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhh
Confidence 3444555555555555544321111 1222222334445555555555544444432 1122222222334444555
Q ss_pred HHHHHHHHHHHHH
Q 006640 439 MDRAIEVFDKMCE 451 (637)
Q Consensus 439 ~~~A~~~~~~m~~ 451 (637)
+++|+.-|+++.+
T Consensus 184 ~eealeDyKki~E 196 (271)
T KOG4234|consen 184 YEEALEDYKKILE 196 (271)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555554
No 315
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.60 E-value=15 Score=32.74 Aligned_cols=16 Identities=13% Similarity=0.208 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHhcCC
Q 006640 458 LKTFETLMWGYSEARQ 473 (637)
Q Consensus 458 ~~~~~~l~~~~~~~g~ 473 (637)
+..+.+|++.+.+.|+
T Consensus 178 ~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 178 PEILKSLASIYQKLKN 193 (203)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3333333333333333
No 316
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.57 E-value=5.6 Score=30.80 Aligned_cols=48 Identities=23% Similarity=0.162 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 006640 476 RAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 476 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 523 (637)
+..+-++.+..+.+.|+.......+.+|.|.+++.-|.++++.++.+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~ 75 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC 75 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 455555666677788888888888899999999999999998887653
No 317
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.53 E-value=86 Score=34.16 Aligned_cols=102 Identities=12% Similarity=0.131 Sum_probs=65.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006640 79 MNSLIERGKPQEAQAIFNNLIEGGHKP---SLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSES 155 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 155 (637)
++.+.+.+.+++|+++-..... ..| -...+...|..+...|++++|-...-.|.. .+..-|..-+..++..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 7888999999999988776653 333 234567778888888899888887777763 3455566555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006640 156 GNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI 189 (637)
Q Consensus 156 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 189 (637)
++... ++.-+.......+...|..++..+..
T Consensus 437 ~~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccch---hhccCCCCCcccCchHHHHHHHHHHH
Confidence 54432 23333332223455667777766665
No 318
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=81.16 E-value=65 Score=32.51 Aligned_cols=59 Identities=8% Similarity=0.156 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 357 STIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 357 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
..|+.-|...|++.+|.+..+++--- +-....++.+++...-+.|+-...+.+++..-+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~ 571 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFK 571 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34555566666666666655554211 111345555666666666665555555555543
No 319
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.66 E-value=17 Score=32.47 Aligned_cols=79 Identities=22% Similarity=0.253 Sum_probs=61.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHhcCCHH
Q 006640 153 SESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREG--NVKPNLRTYNVLVRAWCNEKNIT 230 (637)
Q Consensus 153 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~~li~~~~~~g~~~ 230 (637)
.+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.++++.++....+.. +-.+|+..+.+|++.+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 678888888888776657777777777776 678999999998887642 12578999999999999999999
Q ss_pred HHH
Q 006640 231 EAW 233 (637)
Q Consensus 231 ~A~ 233 (637)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 885
No 320
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=80.59 E-value=39 Score=29.61 Aligned_cols=78 Identities=15% Similarity=0.156 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----C-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006640 404 PEKAEELLMTMIESGFHPNVVIFTTIISGWCSDG----S-------MDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEAR 472 (637)
Q Consensus 404 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~-------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 472 (637)
+++|..-|++.+... |....++..+..+|...+ + +++|...|+++.+ ..|+..+|..-+..+.
T Consensus 51 iedAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~--- 124 (186)
T PF06552_consen 51 IEDAISKFEEALKIN-PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA--- 124 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH---
Confidence 344555555555542 333456666666665443 2 5556666666665 4689999988777663
Q ss_pred ChhHHHHHHHHHHHCCCC
Q 006640 473 QPWRAEEILQIMKAFGVH 490 (637)
Q Consensus 473 ~~~~A~~~~~~m~~~g~~ 490 (637)
+|-++..++.+.+..
T Consensus 125 ---kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 125 ---KAPELHMEIHKQGLG 139 (186)
T ss_dssp ---THHHHHHHHHHSSS-
T ss_pred ---hhHHHHHHHHHHHhh
Confidence 467777777665544
No 321
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.51 E-value=15 Score=34.94 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=56.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006640 172 GLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGN--VKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVV 249 (637)
Q Consensus 172 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 249 (637)
|.+.++.+...++..-....+++.+...+-++..... ..|+ .+-.+.++.+. .-+.++++.++..=+.-|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~-~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRN-WTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcc-ccHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 4444555555555555556667777776666654210 0011 01111222222 234556666666666667777777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 250 TYNTIATAYAQNGEADQAEEVIVEMEH 276 (637)
Q Consensus 250 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 276 (637)
+++.+++.+.+.+++..|.++.-.|..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 777777777777777766666655544
No 322
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.01 E-value=3.2 Score=24.47 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006640 426 FTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
|..+...|...|++++|...|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444455555555555555555443
No 323
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.01 E-value=52 Score=30.70 Aligned_cols=50 Identities=12% Similarity=0.054 Sum_probs=26.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006640 226 EKNITEAWNVMHKMAASGMKPDV---VTYNTIATAYAQNGEADQAEEVIVEME 275 (637)
Q Consensus 226 ~g~~~~A~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~ 275 (637)
...+++|+.-|++.++...+... ...-.++..+.+.+++++....|.+++
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 34566666666666654222222 223345556666666666666665553
No 324
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.93 E-value=56 Score=31.02 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=30.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 253 TIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTM 309 (637)
Q Consensus 253 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 309 (637)
...+.|..+|.+.+|.++.+..+..+. .+...+-.++..+...|+--.|.+-++++
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344555566666666666655554432 34455555666666666655555554444
No 325
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.66 E-value=5.4 Score=23.47 Aligned_cols=28 Identities=18% Similarity=0.139 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 006640 495 TFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 495 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
.|..+..++...|++++|...+++....
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4555666666666666666666665443
No 326
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=79.26 E-value=15 Score=35.31 Aligned_cols=54 Identities=15% Similarity=0.104 Sum_probs=30.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006640 361 NAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMI 415 (637)
Q Consensus 361 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 415 (637)
.-|.+.|.+++|+..|....... +-+.+++..-..+|.+...+..|..--...+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 34556666666666666554431 1255555555666666666665555554444
No 327
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=79.13 E-value=22 Score=38.04 Aligned_cols=178 Identities=17% Similarity=0.224 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCC
Q 006640 354 ITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHA----------YSILAKGYVREQEPEKAEELLMTMIES--GFHP 421 (637)
Q Consensus 354 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~ 421 (637)
.+...++-.|....+++..+++.+.+.+. ||..- |.-.++---+-|+-++|+.+.-.+.+. .+.|
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 34445555566666666666666666542 32111 111111122346666777666666543 2334
Q ss_pred CHHH-----HHH--HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCH
Q 006640 422 NVVI-----FTT--IISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQ-PWRAEEILQIMKAFGVHPQK 493 (637)
Q Consensus 422 ~~~~-----~~~--li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~g~~p~~ 493 (637)
|... |-- +-+.|...+..+.|.+.|++..+ +.|+...=..+...+..+|. ++...+ |..-|+
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~Fens~E----lq~Igm---- 348 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEHFENSLE----LQQIGM---- 348 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhhccchHH----HHHHHH----
Confidence 4332 211 11234556778888999998877 55766543333333444442 222222 222121
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhccccccccccccchHHHHHHHHhhhccC
Q 006640 494 STFLLLAEARRATGLTKEAKRILSKIKNKERTNEMEAEEDIPVESLERLYHKEATT 549 (637)
Q Consensus 494 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~a~~~~e~l~~~~~~~ 549 (637)
.+..++++.|.++.-..+++-.--... .....+...+.+++|.++++.|-.
T Consensus 349 ----kLn~LlgrKG~leklq~YWdV~~y~~a-sVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 349 ----KLNSLLGRKGALEKLQEYWDVATYFEA-SVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred ----HHHHHhhccchHHHHHHHHhHHHhhhh-hhhccCHHHHHHHHHHHhccCCce
Confidence 244566888888777777655421110 122356678888888888876543
No 328
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=79.04 E-value=72 Score=31.73 Aligned_cols=65 Identities=14% Similarity=0.075 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006640 387 DAHAYSILAKGYVREQEPEKAEELLMTMIESGFHP---NVVIFTTIISGWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 451 (637)
...+|..++..+.+.|.++.|...+.++...+... ++...-.-.......|+..+|+..+++..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456666666667777777777666666532111 223333334445566666666666666655
No 329
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.90 E-value=3.8 Score=23.81 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=18.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhccc
Q 006640 496 FLLLAEARRATGLTKEAKRILSKIKNKER 524 (637)
Q Consensus 496 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 524 (637)
+..++.++.+.|++++|.+.++++....|
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 34455666677777777777777665544
No 330
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=78.61 E-value=19 Score=27.64 Aligned_cols=47 Identities=19% Similarity=0.120 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006640 88 PQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVE 134 (637)
Q Consensus 88 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 134 (637)
.-++++-++.+...+.-|++....+.+++|.+.+++..|.++++-..
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33455555555555555666666666666666666666666666444
No 331
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.48 E-value=52 Score=29.26 Aligned_cols=90 Identities=16% Similarity=0.080 Sum_probs=50.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH
Q 006640 220 VRAWCNEKNITEAWNVMHKMAASGMKPDV----VTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCK 295 (637)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 295 (637)
...+...+++++|+..++..+.. +.|. ..---|.+.....|.+|+|+..++.....+. .......-.+.+..
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ--TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 34556677777777777666543 1121 1112344556667777777777766554322 22223334566667
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 006640 296 EGKIKEALRFARTMKEYG 313 (637)
Q Consensus 296 ~g~~~~A~~~~~~~~~~~ 313 (637)
.|+-++|+.-|.+....+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 777777777777766553
No 332
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=77.41 E-value=88 Score=31.90 Aligned_cols=121 Identities=7% Similarity=-0.019 Sum_probs=69.0
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006640 189 IAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAE 268 (637)
Q Consensus 189 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 268 (637)
..|++-.|-+-+....+.. +.++.............|+++.+...+...... +.....+...+++...+.|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 3455555443333333322 223333333334456678888887777665432 2334556667777778888888888
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 006640 269 EVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYG 313 (637)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 313 (637)
..-.-|....++ +..+........-..|-++++...++++....
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 888777766553 33333333333344566778888777776543
No 333
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=76.77 E-value=15 Score=28.48 Aligned_cols=46 Identities=9% Similarity=0.117 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 006640 336 GVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGK 381 (637)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 381 (637)
+..+-+..+......|++.+..+.+.+|.+.+++..|..+|+-+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444455555555666666666666676667777777666666554
No 334
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.24 E-value=6 Score=25.41 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=20.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCC
Q 006640 78 LMNSLIERGKPQEAQAIFNNLIEGG 102 (637)
Q Consensus 78 l~~~~~~~g~~~~A~~~~~~~~~~~ 102 (637)
|..+|.+.|+.+.|+.++++++..|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 6788888888888888888888643
No 335
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=74.72 E-value=4.8 Score=22.22 Aligned_cols=21 Identities=29% Similarity=0.621 Sum_probs=14.0
Q ss_pred HHHHHHHHHcCChhHHHHHHH
Q 006640 76 TKLMNSLIERGKPQEAQAIFN 96 (637)
Q Consensus 76 ~~l~~~~~~~g~~~~A~~~~~ 96 (637)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 445666777777777776664
No 336
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.89 E-value=54 Score=27.73 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=25.2
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006640 190 AGKPEESVKLLDLMSREGNVKPNL-RTYNVLVRAWCNEKNITEAWNVMHKMAAS 242 (637)
Q Consensus 190 ~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 242 (637)
.++++++..+++.|.-. .|+. ..-..-.-.+...|++++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvL---rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL---RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHh---CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 55666666666666543 2322 12222223344556666666666666544
No 337
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=73.35 E-value=27 Score=31.53 Aligned_cols=76 Identities=14% Similarity=0.042 Sum_probs=49.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHH
Q 006640 356 YSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESG--FHPNVVIFTTIISG 432 (637)
Q Consensus 356 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~ 432 (637)
.+..++.+.+.+.+.+++...+.-++.. +.|...-..+++.|+-.|++++|..-++-.-+.. ..+-...|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3445566677778888888777766653 4466677777888888888888876666554431 12334456655554
No 338
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=73.28 E-value=75 Score=29.30 Aligned_cols=83 Identities=17% Similarity=0.114 Sum_probs=41.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHH
Q 006640 363 WSTAGFMDKCKEIFDDMGKAGIKPDA-HAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVV-IFTTIISGWCSDGSMD 440 (637)
Q Consensus 363 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~ 440 (637)
|.....++.|+..+.+.+.. .|+. .-|+.-+..+.+..+++.+..--++.++. .||.+ ..--+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 33344556666655555543 3443 33344444555566666655555555443 34433 2223334444555566
Q ss_pred HHHHHHHHH
Q 006640 441 RAIEVFDKM 449 (637)
Q Consensus 441 ~A~~~~~~m 449 (637)
+|+..+.+.
T Consensus 96 eaI~~Lqra 104 (284)
T KOG4642|consen 96 EAIKVLQRA 104 (284)
T ss_pred HHHHHHHHH
Confidence 666666655
No 339
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=73.27 E-value=1e+02 Score=30.62 Aligned_cols=64 Identities=6% Similarity=-0.087 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 006640 318 LVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNP---DVITYSTIMNAWSTAGFMDKCKEIFDDMGK 381 (637)
Q Consensus 318 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 381 (637)
..+|..++..+.+.|.++.|...+..+...+... ++.....-+......|+..+|+..++...+
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555666666666666555554432111 122222233334445555566655555554
No 340
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.26 E-value=81 Score=29.50 Aligned_cols=94 Identities=13% Similarity=0.206 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CCC-------HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCC-CCCC
Q 006640 285 TCGIIISGYCKEGKIKEALRFARTMKEYGV----HPN-------LVIFNLLIKGFVEIMDRDGVDEVLALMKEFR-VNPD 352 (637)
Q Consensus 285 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 352 (637)
|-+.|...|...+.+.+..++++++..... ..| ...|..-++.|....+......++++..... .-|.
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 334566677777777777777777654311 111 2356666677777777666777777654321 2234
Q ss_pred HHHHHHHHHH-----HHHcCChHHHHHHHHHH
Q 006640 353 VITYSTIMNA-----WSTAGFMDKCKEIFDDM 379 (637)
Q Consensus 353 ~~~~~~li~~-----~~~~g~~~~a~~~~~~~ 379 (637)
+.... +|+- ..+.|.+++|-.-|-+.
T Consensus 227 PlImG-vIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 227 PLIMG-VIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred hHHHh-HHHHcCCccccccchHHHHHhHHHHH
Confidence 43333 3332 34556777765444333
No 341
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=73.05 E-value=1e+02 Score=33.33 Aligned_cols=146 Identities=12% Similarity=0.137 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006640 338 DEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIES 417 (637)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 417 (637)
....+.+...-+-.+.....-++..|.+.|-.+.+..+.+.+-.+-. ...-|..-+..+.+.|+......+...+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll-- 465 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL-- 465 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH--
Confidence 33444444333334455566677777777777777777766543311 11223333334444554444333333332
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH---HHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 006640 418 GFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMW---GYSEARQPWRAEEILQIMKAFGVHPQKS 494 (637)
Q Consensus 418 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 494 (637)
..|...|... ...+.+.+....+-.+.-++.+... -..+.|++.+|.+.+-.+.+.++.|..-
T Consensus 466 -------------~~~~~~~~~~-~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f 531 (566)
T PF07575_consen 466 -------------EEYCNNGEPL-DDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSF 531 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------HHHhcCCCcc-cHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHH
Confidence 3333333211 1222222211100011111111111 1133477777777776666666777655
Q ss_pred HHHHHHH
Q 006640 495 TFLLLAE 501 (637)
Q Consensus 495 ~~~~l~~ 501 (637)
....+.+
T Consensus 532 ~~~LL~d 538 (566)
T PF07575_consen 532 WPLLLCD 538 (566)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 4444443
No 342
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=72.29 E-value=7.2 Score=22.58 Aligned_cols=19 Identities=32% Similarity=0.543 Sum_probs=7.9
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 006640 432 GWCSDGSMDRAIEVFDKMC 450 (637)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~ 450 (637)
++.+.|++++|.+.|++++
T Consensus 9 ~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHH
Confidence 3333444444444444443
No 343
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=71.57 E-value=96 Score=29.60 Aligned_cols=63 Identities=10% Similarity=-0.024 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 006640 245 KPDVVTYNTIATAYAQNGEADQAEEVIVEMEHN-GVQPNGRTCGIIISGYCKEGKIKEALRFAR 307 (637)
Q Consensus 245 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 307 (637)
.++..+...++..++..+++..-.++++..... +...|...|..+|....+.|+..-..++.+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 445555556666666666666666666555443 444556666666666666666555544443
No 344
>PRK11619 lytic murein transglycosylase; Provisional
Probab=70.93 E-value=1.7e+02 Score=32.14 Aligned_cols=382 Identities=9% Similarity=0.019 Sum_probs=186.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006640 79 MNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNM 158 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 158 (637)
...+.+.+++...+..+.. .+.+...-.....+....|+.++|......+-..| ...+..++.++..+.+.|.+
T Consensus 106 l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 106 VNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred HHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCC
Confidence 3445556666655542211 23455555666777777888777777666666555 44566677777777766543
Q ss_pred HHH--HHHHHHHHHCCCCCCHHHHHHHHHHHH------------hcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH-
Q 006640 159 EEA--MDTFWKMKESGLTPTTSTYNTLIKGYG------------IAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAW- 223 (637)
Q Consensus 159 ~~A--~~~~~~m~~~~~~~~~~~~~~li~~~~------------~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~- 223 (637)
... .+=++.+...| +...-..+...+. -..+...+..++.. ++++...-..++.++
T Consensus 180 t~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~------~~~~~~~~~~~~~~l~ 250 (644)
T PRK11619 180 DPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART------TGPTDFTRQMAAVAFA 250 (644)
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc------cCCChhhHHHHHHHHH
Confidence 322 22222222222 1111122222110 00111111111111 112221111111122
Q ss_pred -HhcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCH
Q 006640 224 -CNEKNITEAWNVMHKMAASG-MKPD--VVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKI 299 (637)
Q Consensus 224 -~~~g~~~~A~~~~~~~~~~g-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 299 (637)
....+.+.|..++....... ..+. ..++..+.......+...++...++...... .+.....-.+......+++
T Consensus 251 Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw 328 (644)
T PRK11619 251 SVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDR 328 (644)
T ss_pred HHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCH
Confidence 13445678888888764432 2222 1233344433334332556666666544332 2334444445555578888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH-HHHHHH
Q 006640 300 KEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKC-KEIFDD 378 (637)
Q Consensus 300 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~ 378 (637)
+.+...+..|.... .....-..-+..++...|+.++|...|+.+... .+ |-.++.+ .+.|..-.- ......
T Consensus 329 ~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~~---fYG~LAa-~~Lg~~~~~~~~~~~~ 400 (644)
T PRK11619 329 RGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---RG---FYPMVAA-QRLGEEYPLKIDKAPK 400 (644)
T ss_pred HHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC---cHHHHHH-HHcCCCCCCCCCCCCc
Confidence 88888888875432 233444455666666788888888888887431 12 2222221 223321000 000000
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C
Q 006640 379 MGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH-----G 453 (637)
Q Consensus 379 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~ 453 (637)
....+..+. -..-+..+...|....|...+..+... .+......+.......|..+.++......... .
T Consensus 401 -~~~~~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~r 474 (644)
T PRK11619 401 -PDSALTQGP--EMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEER 474 (644)
T ss_pred -hhhhhccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHh
Confidence 000000011 112344566788889998888887764 34455555556666778888877766543221 1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 006640 454 VSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKS 494 (637)
Q Consensus 454 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 494 (637)
. |- .|...+..+...-.++.++-+--...+.++.|+..
T Consensus 475 f-p~--~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~ 512 (644)
T PRK11619 475 F-PL--AWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKAR 512 (644)
T ss_pred C-Cc--chHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCc
Confidence 1 21 35566666666656666553322224666777643
No 345
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=70.43 E-value=2.9e+02 Score=34.74 Aligned_cols=322 Identities=10% Similarity=0.035 Sum_probs=167.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCC-CCHHHHHHHH-HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006640 77 KLMNSLIERGKPQEAQAIFNNLIEGGHK-PSLVTYTTLL-AALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE 154 (637)
Q Consensus 77 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 154 (637)
.|..+-.+++.+.+|+..++.-.....+ --...+..++ ..|+..++++....+...-.. .|+ .+ .-|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HH-HHHHHHHh
Confidence 4556667889999999999884111011 1122333444 489999999988877664111 222 22 33445667
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHH-HHHHHhcCCHHHHH
Q 006640 155 SGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVL-VRAWCNEKNITEAW 233 (637)
Q Consensus 155 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~ 233 (637)
.|++..|...|+.+.+.+++ ....++-++..-...|.++..+-..+...... .+....|+++ +.+--+.++++...
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~--se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR--SEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhcc--CHHHHHHHHHHHHHHhhhcchhhhh
Confidence 89999999999999987643 46677777766667888888888777665542 3444445444 34446778888777
Q ss_pred HHHHHHHHCCCCCCHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHHC--------CCC-CChhhHHHHHHHHHHcCCHH
Q 006640 234 NVMHKMAASGMKPDVVTYNTI--ATAYAQNG--EADQAEEVIVEMEHN--------GVQ-PNGRTCGIIISGYCKEGKIK 300 (637)
Q Consensus 234 ~~~~~~~~~g~~~~~~~~~~l--i~~~~~~g--~~~~A~~~~~~~~~~--------~~~-~~~~~~~~li~~~~~~g~~~ 300 (637)
..+. .. +..+|... .....+.. +.-.-.+..+.+.+. +.. .-...|..++....-..- +
T Consensus 1539 ~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el-~ 1610 (2382)
T KOG0890|consen 1539 SYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL-E 1610 (2382)
T ss_pred hhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH-H
Confidence 6655 11 22333322 22222221 111111122222211 110 001223333322211110 0
Q ss_pred HHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH-HHhCCCC-----CCHHHHHHHHHHHHHcCChHHHH
Q 006640 301 EALRFARTMK-EYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLAL-MKEFRVN-----PDVITYSTIMNAWSTAGFMDKCK 373 (637)
Q Consensus 301 ~A~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~ 373 (637)
.-.+...... ......+...|..-+..-....+..+-+-.++. +...... --..+|..........|.++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 0000000000 000111122233332221111111221111111 2221111 12456888888888899999998
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006640 374 EIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESG 418 (637)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 418 (637)
..+-...+.+ -+..+--.+...-..|+...|+.++++..+..
T Consensus 1691 nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1691 NALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 7776666654 33455566677788999999999999888653
No 346
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=69.72 E-value=1.4e+02 Score=30.74 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=28.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006640 395 AKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS 435 (637)
Q Consensus 395 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 435 (637)
.-.|...|++-.|.+.|.+.... +..++..|-.|..+|..
T Consensus 342 G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 342 GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 33466778888888888877665 46677888888777763
No 347
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=69.50 E-value=1.5e+02 Score=30.84 Aligned_cols=165 Identities=13% Similarity=0.166 Sum_probs=87.7
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006640 281 PNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIM 360 (637)
Q Consensus 281 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 360 (637)
.|.....+++..+..+....-...+..+|...| .+-..+..+++.|... ..+....+++.+.+.... |++.-..|+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 345555666666766666666666777776654 4555666666766666 445566666666665432 344444444
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 006640 361 NAWSTAGFMDKCKEIFDDMGKAGIKP-----DAHAYSILAKGYVREQEPEKAEELLMTMIES-GFHPNVVIFTTIISGWC 434 (637)
Q Consensus 361 ~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~ 434 (637)
.-|.+ ++.+.+...|.++..+-++. -..+|.-|... -..+.+.-+.+..++... |...-.+.+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 44444 66666666666655432110 11233333321 133445555555544432 22233344444445555
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 006640 435 SDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~ 452 (637)
...++++|++++..+.++
T Consensus 217 ~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 217 ENENWTEAIRILKHILEH 234 (711)
T ss_pred cccCHHHHHHHHHHHhhh
Confidence 666666666666666554
No 348
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=69.13 E-value=1.7 Score=36.81 Aligned_cols=52 Identities=8% Similarity=0.104 Sum_probs=25.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006640 220 VRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVI 271 (637)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 271 (637)
+..+.+.+.......+++.+...+...+....+.++..|++.++.+...+++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 3334444455555555555554443344555555555555555545544444
No 349
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.03 E-value=13 Score=23.90 Aligned_cols=23 Identities=43% Similarity=0.614 Sum_probs=11.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 006640 394 LAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
|..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555543
No 350
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=66.98 E-value=17 Score=26.79 Aligned_cols=47 Identities=11% Similarity=-0.056 Sum_probs=27.6
Q ss_pred hcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHH
Q 006640 470 EARQPWRAEEILQIMKAFGVHPQ--KSTFLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 470 ~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~eA~~~~ 516 (637)
+....++|+..|+...+.-..|. ..++.+++.+++..|++.+++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777666654222222 225666677777777777766654
No 351
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=66.80 E-value=78 Score=26.73 Aligned_cols=82 Identities=10% Similarity=0.130 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHH
Q 006640 425 IFTTIISGWCSDGSMDRAIEVFDKMCEHG-----VSPNLKTFETLMWGYSEARQ-PWRAEEILQIMKAFGVHPQKSTFLL 498 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ 498 (637)
..|.++.-....++..-.+.+++.+.... -..+...|..++.+.+...- .--+..+|.-|.+.+.+++...|.+
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34566666666666666666666653211 01245567788887766555 3346677888877778888888888
Q ss_pred HHHHHHHc
Q 006640 499 LAEARRAT 506 (637)
Q Consensus 499 l~~~~~~~ 506 (637)
++.++.+-
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 88876654
No 352
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.62 E-value=2.3e+02 Score=32.06 Aligned_cols=57 Identities=23% Similarity=0.299 Sum_probs=32.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHH-----HHHHH---HHHhcCChhHHHHHHHHHHH
Q 006640 75 MTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTY-----TTLLA---ALTIQKRFNSIHSIMSQVEE 135 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----~~ll~---~~~~~~~~~~a~~~~~~~~~ 135 (637)
+..-+..+....++++|..+-+.... |++... ..... -+..++++++|...|.++..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~----~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDS----PNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCC----CChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 55556666677777777776655432 333221 11111 13456778888888877643
No 353
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=66.44 E-value=44 Score=30.24 Aligned_cols=50 Identities=10% Similarity=0.061 Sum_probs=20.0
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006640 117 LTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWK 167 (637)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 167 (637)
+.+.++..+++.+.+.-++.. |.|...-..++..|+-.|++++|..-++-
T Consensus 11 LL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHH
Confidence 333334444444433333332 33333334444444444444444443333
No 354
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=65.88 E-value=25 Score=28.48 Aligned_cols=48 Identities=23% Similarity=0.188 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 006640 476 RAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKE 523 (637)
Q Consensus 476 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 523 (637)
|..+-++.+..+++.|+.......+++|.|.+++.-|.++++-++-+.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~ 114 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC 114 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 445556666778899999999999999999999999999999886553
No 355
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=65.72 E-value=1.4e+02 Score=29.35 Aligned_cols=119 Identities=14% Similarity=0.089 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHH
Q 006640 369 MDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS---DGSMDRAIEV 445 (637)
Q Consensus 369 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~ 445 (637)
.+.-+.+++++++.+ +.+......++..+.+..+.++..+-++++.... +.+...|...+..... .-.+.....+
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 345556666666653 3456666667777777777777777777777653 4466777776665443 2245555555
Q ss_pred HHHHHHC------CC------CCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 006640 446 FDKMCEH------GV------SPN-----LKTFETLMWGYSEARQPWRAEEILQIMKAFGV 489 (637)
Q Consensus 446 ~~~m~~~------~~------~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 489 (637)
|.+.+.. +. .++ ...|..+...+.++|..+.|..+++.+.+.++
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 5544321 11 011 11222333344567777777777776665444
No 356
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=65.44 E-value=1.3e+02 Score=28.63 Aligned_cols=53 Identities=13% Similarity=0.197 Sum_probs=37.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH-------HHHHHHHHHhcCChhHHHHH
Q 006640 77 KLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVT-------YTTLLAALTIQKRFNSIHSI 129 (637)
Q Consensus 77 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------~~~ll~~~~~~~~~~~a~~~ 129 (637)
.+.+...+.+++++|+..+.+++..|+..|..+ ...+...|...|+.....+.
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~ 67 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDT 67 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 467778889999999999999998887666544 33445566666665544433
No 357
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=65.32 E-value=62 Score=26.86 Aligned_cols=70 Identities=16% Similarity=0.211 Sum_probs=47.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 006640 455 SPNLKTFETLMWGYSEARQ---PWRAEEILQIMKAFGVHPQ--KSTFLLLAEARRATGLTKEAKRILSKIKNKERT 525 (637)
Q Consensus 455 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 525 (637)
.+...+-..+..++.++.+ +.+++.+++.+.+ .-.|+ .+...-+.-.+.|.++++.+.++++.+.+..|+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~-~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK-SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh-hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 4566777777888887664 4567788888765 22233 233334455678889999999999888877664
No 358
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=64.93 E-value=3.8e+02 Score=33.91 Aligned_cols=62 Identities=21% Similarity=0.009 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 006640 458 LKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
..+|....+.+..+|+.+.|...+-...+.+ -...+...+..+...|+-..|..++++..+.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4578888888888999999988766555533 3457777888889999999999999988744
No 359
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=63.97 E-value=23 Score=26.04 Aligned_cols=46 Identities=11% Similarity=0.063 Sum_probs=31.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CH-HHHHHHHHHHHhcCChhHHHHH
Q 006640 435 SDGSMDRAIEVFDKMCEHGVSP-NL-KTFETLMWGYSEARQPWRAEEI 480 (637)
Q Consensus 435 ~~g~~~~A~~~~~~m~~~~~~p-~~-~~~~~l~~~~~~~g~~~~A~~~ 480 (637)
...+.++|+..|+..++.-..| +. .++..++.+++..|++.+.+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566778888888887653222 22 2566777888888888777665
No 360
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.77 E-value=1.1e+02 Score=27.33 Aligned_cols=88 Identities=16% Similarity=0.152 Sum_probs=44.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006640 361 NAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYS-----ILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCS 435 (637)
Q Consensus 361 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 435 (637)
..+...+++++|...++..... |....+. .|.......|.+++|+..++.....++ .......-...+..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 3455566666666666655542 1111222 233444556666666666665543321 12222333445666
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 006640 436 DGSMDRAIEVFDKMCEHG 453 (637)
Q Consensus 436 ~g~~~~A~~~~~~m~~~~ 453 (637)
.|+-++|..-|++..+.+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 666666666666666543
No 361
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=63.16 E-value=1.2e+02 Score=28.86 Aligned_cols=87 Identities=14% Similarity=0.033 Sum_probs=38.4
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----
Q 006640 325 IKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVR---- 400 (637)
Q Consensus 325 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 400 (637)
|++++..+++.++....-+--+..-+....+...-|-.|.+.+.+..+.++-..-+...-+-+..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4445555555554433222211111112233333444455666666655555554443112223335555544433
Q ss_pred -cCCHHHHHHHH
Q 006640 401 -EQEPEKAEELL 411 (637)
Q Consensus 401 -~g~~~~A~~~~ 411 (637)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 46666665555
No 362
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=62.96 E-value=2e+02 Score=29.97 Aligned_cols=181 Identities=13% Similarity=0.097 Sum_probs=125.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006640 245 KPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLL 324 (637)
Q Consensus 245 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 324 (637)
..|.....+++..+..+..+.-.+.+..+|..-| .+-..+..++.+|... ..+.-..+++++.+..+ .|++.-..+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence 4566777889999999988988889999998865 3678889999999988 55778888888887652 344444455
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 006640 325 IKGFVEIMDRDGVDEVLALMKEFRVNP-----DVITYSTIMNAWSTAGFMDKCKEIFDDMGK-AGIKPDAHAYSILAKGY 398 (637)
Q Consensus 325 l~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~ 398 (637)
..-|-+ ++...+...|..+...-++. -...|.-+... -..+.+....+...+.. .|...-...+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 555554 77888888888775532221 12244444432 13466777777776654 34344456666666788
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006640 399 VREQEPEKAEELLMTMIESGFHPNVVIFTTIISGW 433 (637)
Q Consensus 399 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 433 (637)
....++.+|++++..+.+.+ ..|.-+-..++.-+
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 88999999999999999875 55665555555543
No 363
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=62.83 E-value=1e+02 Score=28.21 Aligned_cols=89 Identities=21% Similarity=0.286 Sum_probs=49.9
Q ss_pred HhcCCHHHHHHHHHHHHH----CCCCCCHH--HHHHHHHHHHhcCChh-------HHHHHHHHHHHCC---CCC-C-HHH
Q 006640 434 CSDGSMDRAIEVFDKMCE----HGVSPNLK--TFETLMWGYSEARQPW-------RAEEILQIMKAFG---VHP-Q-KST 495 (637)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~----~~~~p~~~--~~~~l~~~~~~~g~~~-------~A~~~~~~m~~~g---~~p-~-~~~ 495 (637)
.....+++|++.|.-+.- .+.+|... .+..+.+.|...|+.+ .|.+.|++..+.. ..+ + ...
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 334455666665554431 12233322 3444556666666633 3555555553222 221 1 224
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 006640 496 FLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 496 ~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
.-.++.+..|.|+.++|.++|.++...
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 446778888999999999999998755
No 364
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=62.81 E-value=15 Score=37.15 Aligned_cols=15 Identities=0% Similarity=-0.356 Sum_probs=8.7
Q ss_pred ccchhhhhcchhhhh
Q 006640 586 SLECSWFATTSMYLS 600 (637)
Q Consensus 586 ~~g~swi~~~~~~h~ 600 (637)
.||-+|+-+-|..|-
T Consensus 210 ~~~d~~~sv~gd~hG 224 (476)
T KOG0376|consen 210 VPGDVKISVCGDTHG 224 (476)
T ss_pred cCCCceEEecCCccc
Confidence 566666665555554
No 365
>PRK10941 hypothetical protein; Provisional
Probab=61.01 E-value=1.5e+02 Score=28.28 Aligned_cols=60 Identities=7% Similarity=-0.081 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006640 181 NTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAAS 242 (637)
Q Consensus 181 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 242 (637)
+.+-.+|.+.++++.|+++.+.+.... |.+..-+.--.-.|.+.|.+..|..=++..++.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~--P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD--PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 345556666677777777766666653 444555555666666667776666666666543
No 366
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=60.81 E-value=65 Score=33.74 Aligned_cols=129 Identities=10% Similarity=0.015 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006640 89 QEAQAIFNNLIEGGHKPSLVTYTTL---LAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTF 165 (637)
Q Consensus 89 ~~A~~~~~~~~~~~~~~~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 165 (637)
+-+-.+|..|. .|+.-.|..| .--+...|+...|...+..+.........+....|.....+.|..-+|-.++
T Consensus 590 e~~~~~~~~~~----~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l 665 (886)
T KOG4507|consen 590 EIGSFLFHAIN----KPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLL 665 (886)
T ss_pred HHHHHHHHHhc----CCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHH
Confidence 34455555553 3444344333 2223456888888888777654321222334455667777888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 006640 166 WKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWC 224 (637)
Q Consensus 166 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 224 (637)
.+...... ..+-++..+.++|....+++.|++.|.+..+.. +.+.+.-+.|...-|
T Consensus 666 ~q~l~~~~-sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~--~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 666 LQALAINS-SEPLTFLSLGNAYLALKNISGALEAFRQALKLT--TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHhhcc-cCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC--CCChhhHHHHHHHHH
Confidence 87766542 356778889999999999999999999988764 556777777766555
No 367
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=60.73 E-value=2.6e+02 Score=30.60 Aligned_cols=221 Identities=12% Similarity=0.074 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------hhHHHHHHHHHHHcCCCCCHH-
Q 006640 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKR-------FNSIHSIMSQVEENGMDPDSI- 143 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~- 143 (637)
...|. +|=.+.|+|++++|.++..+... ........+...+..+....+ -+.....|.+..+.....|++
T Consensus 112 ~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK 189 (613)
T PF04097_consen 112 DPIWA-LIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYK 189 (613)
T ss_dssp EEHHH-HHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHH
T ss_pred CccHH-HHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHH
Confidence 33453 45667799999999999855443 234445567777888766532 235556666665543322543
Q ss_pred --HHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------ChHHHHHHHHHHHhcCCCCC
Q 006640 144 --FFNAVINAFSESGNMEEAM-DTFWKMKESGLTPTTSTYNTLIKGYGIAG---------KPEESVKLLDLMSREGNVKP 211 (637)
Q Consensus 144 --~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g---------~~~~A~~~~~~m~~~~~~~~ 211 (637)
+|..+ .++.-...-. .+...+ +.+.|--|.-.-.... .++.-.+.+.+.-+.. +.+
T Consensus 190 ~AvY~il----g~cD~~~~~~~~V~~ti-------ED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~-F~~ 257 (613)
T PF04097_consen 190 RAVYKIL----GRCDLSRRHLPEVARTI-------EDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESH-FNA 257 (613)
T ss_dssp HHHHHHH----HT--CCC-S-TTC--SH-------HHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGG-CTT
T ss_pred HHHHHHH----hcCCccccchHHHhCcH-------HHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhh-ccc
Confidence 22222 1111100000 111000 1122222211111110 0111112222222221 222
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCChhhHHHHH
Q 006640 212 NLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGV-QPNGRTCGIII 290 (637)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li 290 (637)
..........+.-.|+++.|++.+-+. .+...+.+.+...+..| |-+......-..+..... .|...-+..||
T Consensus 258 -~~~p~~Yf~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIaL~~~---gLL~~~~~~~~~lls~~~~~~~~ln~arLI 331 (613)
T PF04097_consen 258 -GSNPLLYFQVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIALAYY---GLLRVSDSSSAPLLSVDPGDPPPLNFARLI 331 (613)
T ss_dssp -------HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT---T------------------------HHHHH
T ss_pred -chhHHHHHHHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHHHHHc---CCCCCCCccccceeeecCCCCCCcCHHHHH
Confidence 112223345556689999999988761 22234555544444333 322222111122222110 11125577788
Q ss_pred HHHHH---cCCHHHHHHHHHHHHHc
Q 006640 291 SGYCK---EGKIKEALRFARTMKEY 312 (637)
Q Consensus 291 ~~~~~---~g~~~~A~~~~~~~~~~ 312 (637)
..|.+ ..+..+|+++|-.+...
T Consensus 332 ~~Y~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 332 GQYTRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp HHHHHTTTTT-HHHHHHHHHGGGGS
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHc
Confidence 88887 45788888888777654
No 368
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=60.73 E-value=87 Score=28.65 Aligned_cols=98 Identities=17% Similarity=0.146 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHH--HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 006640 420 HPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSP---NLKTFE--TLMWGYSEARQPWRAEEILQIMKAFGVHPQKS 494 (637)
Q Consensus 420 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 494 (637)
.++..-+|.|+--|.-+..+.+|...|.+- .|+.| |..++. .-|......|+.++|++...++.-.=+.-|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 455556667777776666666666666543 34444 333433 34667788899999988887763211223332
Q ss_pred HHHHHH----HHHHHcCCHHHHHHHHHHH
Q 006640 495 TFLLLA----EARRATGLTKEAKRILSKI 519 (637)
Q Consensus 495 ~~~~l~----~~~~~~g~~~eA~~~~~~~ 519 (637)
.+..+. --+.|.|..++|.++.+.-
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 222222 1256888999999998764
No 369
>PRK10941 hypothetical protein; Provisional
Probab=59.21 E-value=1.6e+02 Score=28.14 Aligned_cols=60 Identities=10% Similarity=0.005 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006640 392 SILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEH 452 (637)
Q Consensus 392 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 452 (637)
+.|-.+|.+.++++.|+.+.+.+.... |.|+.-+.--+-.|.+.|.+..|..-++...+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 345556677777777777777776653 555555666666677777777777777766654
No 370
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=58.38 E-value=1.7e+02 Score=27.92 Aligned_cols=137 Identities=11% Similarity=0.035 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHH-CCCCCChhhHHHHHHHHHHcCCHHHHH
Q 006640 228 NITEAWNVMHKMAA-SGMKPDVVTYNTIATAYAQ-NG-EADQAEEVIVEMEH-NGVQPNGRTCGIIISGYCKEGKIKEAL 303 (637)
Q Consensus 228 ~~~~A~~~~~~~~~-~g~~~~~~~~~~li~~~~~-~g-~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~ 303 (637)
.+.+|+++|+..-. ..+--|..+...+++.... .+ ....--++.+-+.. .+-.++..+...++..+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34455566652211 1233455555555555544 11 22222233333332 233567778888899999999999999
Q ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH-----HHhCCCCCCHHHHHHHHHHHH
Q 006640 304 RFARTMKEY-GVHPNLVIFNLLIKGFVEIMDRDGVDEVLAL-----MKEFRVNPDVITYSTIMNAWS 364 (637)
Q Consensus 304 ~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~li~~~~ 364 (637)
+++...... +...|...|..++......|+..-...+... +.+.++..+...-..+-..+.
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 998887654 5567888999999999999998877777654 345666666666665555443
No 371
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=56.92 E-value=1.8e+02 Score=27.65 Aligned_cols=129 Identities=13% Similarity=0.081 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCC-----CCCCHH--------HHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 006640 72 VRSMTKLMNSLIERGKPQEAQAIFNNLIEGG-----HKPSLV--------TYTTLLAALTIQKRFNSIHSIMSQVEENGM 138 (637)
Q Consensus 72 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~--------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 138 (637)
+.....-...+.-..|+..|+++-++-.+.= ...+.. ....-|.+++..+++.+++...-+--+.--
T Consensus 35 ~~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pE 114 (309)
T PF07163_consen 35 VSLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPE 114 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcc
Confidence 3344444555666788888888887765420 111111 111226777777887777665444332211
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-----cCChHHHHHHH
Q 006640 139 DPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI-----AGKPEESVKLL 200 (637)
Q Consensus 139 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-----~g~~~~A~~~~ 200 (637)
+.-..+...-|-.|.+.+++..+.++-..-.+..-..+...|.+++..|.. .|.+++|+++.
T Consensus 115 klPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 115 KLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 122344555566677888877777777666554222233346666555543 57777777666
No 372
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=56.88 E-value=1.8e+02 Score=27.64 Aligned_cols=94 Identities=15% Similarity=0.160 Sum_probs=42.5
Q ss_pred HHHHHHHHcCCHhHHHHHHHH----HHhCCCCCCHHHHHHH-HHHHHHcCChHHHHHHHHHHHH----CCCCCCHHHHHH
Q 006640 323 LLIKGFVEIMDRDGVDEVLAL----MKEFRVNPDVITYSTI-MNAWSTAGFMDKCKEIFDDMGK----AGIKPDAHAYSI 393 (637)
Q Consensus 323 ~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~ 393 (637)
-++..+.+.|.+.+|..+... +.+..-+++..+...+ -.+|-...++.++..-+..... .-.+|-.+.---
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lD 209 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLD 209 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHH
Confidence 356667777887777765433 3443334443322211 1234444444444444433221 112333333333
Q ss_pred HHHHH--HHcCCHHHHHHHHHHHHH
Q 006640 394 LAKGY--VREQEPEKAEELLMTMIE 416 (637)
Q Consensus 394 l~~~~--~~~g~~~~A~~~~~~~~~ 416 (637)
|+.+- +...++..|...|-+..+
T Consensus 210 L~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 210 LLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HhccceeeccccchhHHHHHHHHHh
Confidence 33332 233455666666665554
No 373
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=56.50 E-value=1.9e+02 Score=27.80 Aligned_cols=149 Identities=13% Similarity=0.086 Sum_probs=68.2
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cC
Q 006640 85 RGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTI----QKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSE----SG 156 (637)
Q Consensus 85 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g 156 (637)
.+++..|...+......+ +......+...+.. ..+...|...|..+.+.| +......|...|.. ..
T Consensus 54 ~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 54 PPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCccc
Confidence 445566666666655422 22233333333322 234566666666655544 22333334444444 23
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-------ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----
Q 006640 157 NMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAG-------KPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCN---- 225 (637)
Q Consensus 157 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~---- 225 (637)
+..+|...|.+..+.|..+...+...+...|..-. +...|...|.+....+ +......+...|..
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~----~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG----NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc----CHHHHHHHHHHHHcCCCC
Confidence 66677777777766664322222333333333221 1224555555554443 33333333333322
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 006640 226 EKNITEAWNVMHKMAASG 243 (637)
Q Consensus 226 ~g~~~~A~~~~~~~~~~g 243 (637)
..+..+|...|...-+.|
T Consensus 204 ~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CcCHHHHHHHHHHHHHCC
Confidence 234555555555555544
No 374
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=55.77 E-value=2.5e+02 Score=29.00 Aligned_cols=106 Identities=13% Similarity=0.046 Sum_probs=65.2
Q ss_pred HHHcCChHHHHHHHHHHH---HCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------CCCCCCH----
Q 006640 363 WSTAGFMDKCKEIFDDMG---KAGIKPD-----AHAYSILAKGYVREQEPEKAEELLMTMIE-------SGFHPNV---- 423 (637)
Q Consensus 363 ~~~~g~~~~a~~~~~~~~---~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~---- 423 (637)
+.-.|++.+|.+++-..- ..|...+ -..||.|.-.+.+.|.+..+..+|.+..+ .|+.|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 445677777777665431 1121111 12235555555666777777777766653 3433321
Q ss_pred -------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006640 424 -------VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSE 470 (637)
Q Consensus 424 -------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 470 (637)
.+|| ..-.|...|+.-.|.+.|.+.... +..++..|..|..+|..
T Consensus 330 s~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 330 SQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 2333 344577889999999999988764 44688899999998864
No 375
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=55.41 E-value=1.9e+02 Score=27.52 Aligned_cols=67 Identities=16% Similarity=0.246 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006640 388 AHAYSILAKGYVREQEPEKAEELLMTMIE----SGFHPNVVIF-TTIISGWCSDGSMDRAIEVFDKMCEHGV 454 (637)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~ 454 (637)
..++..+...|++.++.+.+.++..+..+ .|.+.|+..- -.|.-.|....-+++-++..+.|.+.|-
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGg 186 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGG 186 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 44555555666666665555555444332 2333333211 1122223333334555555555555543
No 376
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=54.24 E-value=27 Score=19.08 Aligned_cols=25 Identities=24% Similarity=0.088 Sum_probs=13.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Q 006640 496 FLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 496 ~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
+..+...+...|++++|...+++..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3445555555555555555555543
No 377
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=54.23 E-value=14 Score=30.34 Aligned_cols=35 Identities=29% Similarity=0.525 Sum_probs=27.1
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006640 81 SLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAAL 117 (637)
Q Consensus 81 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 117 (637)
.+-..|.-.+|..+|..|+++|.+||. |+.|+..+
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 344567778899999999999988874 77777654
No 378
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=54.01 E-value=1e+02 Score=24.01 Aligned_cols=12 Identities=17% Similarity=0.326 Sum_probs=4.7
Q ss_pred hcCCHHHHHHHH
Q 006640 435 SDGSMDRAIEVF 446 (637)
Q Consensus 435 ~~g~~~~A~~~~ 446 (637)
..|++++|..+.
T Consensus 51 NrG~Yq~Al~l~ 62 (115)
T TIGR02508 51 NRGDYQSALQLG 62 (115)
T ss_pred ccchHHHHHHhc
Confidence 334444443333
No 379
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=53.96 E-value=1e+02 Score=25.25 Aligned_cols=47 Identities=11% Similarity=0.155 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 006640 336 GVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKA 382 (637)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 382 (637)
+..+.+..+....+.|++......+.+|.+.+++..|..+|+-+..+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34455555566667778877888888888888888888888776543
No 380
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=52.77 E-value=2.2e+02 Score=27.32 Aligned_cols=57 Identities=11% Similarity=0.091 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006640 427 TTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIM 484 (637)
Q Consensus 427 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 484 (637)
+.....|..+|.+.+|.++.++.+..+ +.+...+-.|+..+...|+--.+..-++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344445556666666666666655532 124445555555666666555555555444
No 381
>PRK11619 lytic murein transglycosylase; Provisional
Probab=52.08 E-value=3.6e+02 Score=29.66 Aligned_cols=315 Identities=8% Similarity=0.040 Sum_probs=152.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006640 79 MNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNM 158 (637)
Q Consensus 79 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 158 (637)
+....+.|++..+.++-..+... +...-..|..+...+. ...+++....+++-. +.+.....-...+..+.+.+++
T Consensus 40 A~~a~~~g~~~~~~~~~~~l~d~-pL~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~--~~P~~~~Lr~~~l~~La~~~~w 115 (644)
T PRK11619 40 IKQAWDNRQMDVVEQLMPTLKDY-PLYPYLEYRQLTQDLM-NQPAVQVTNFIRANP--TLPPARSLQSRFVNELARREDW 115 (644)
T ss_pred HHHHHHCCCHHHHHHHHHhccCC-CcHhHHHHHHHHhccc-cCCHHHHHHHHHHCC--CCchHHHHHHHHHHHHHHccCH
Confidence 34456788888887777766421 1112223333322211 223444444333211 1122233334445556667777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH--HHHH
Q 006640 159 EEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEA--WNVM 236 (637)
Q Consensus 159 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A--~~~~ 236 (637)
......+.. .+.+.........+....|+.++|......+=..|.. .....+.++..+.+.|.+... .+=+
T Consensus 116 ~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~--~p~~cd~l~~~~~~~g~lt~~d~w~R~ 188 (644)
T PRK11619 116 RGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS--LPNACDKLFSVWQQSGKQDPLAYLERI 188 (644)
T ss_pred HHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CChHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 766653211 2345666677788888889988888877777666533 344566667766655544332 2222
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHH------------HcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH--HcCCHHHH
Q 006640 237 HKMAASGMKPDVVTYNTIATAYA------------QNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYC--KEGKIKEA 302 (637)
Q Consensus 237 ~~~~~~g~~~~~~~~~~li~~~~------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A 302 (637)
+.+...| +...-..|..... -..+...+...+.. +.++...-..++-++. ...+.+.|
T Consensus 189 ~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A 260 (644)
T PRK11619 189 RLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFASVARQDAENA 260 (644)
T ss_pred HHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHH
Confidence 2222222 1111111222110 00111111111111 1122211111222222 24456778
Q ss_pred HHHHHHHHHcC-CCCCH--HHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 006640 303 LRFARTMKEYG-VHPNL--VIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDM 379 (637)
Q Consensus 303 ~~~~~~~~~~~-~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 379 (637)
..++....... ..+.. .++..+.......+...++...+....... .+......-+..-...++++.+...+..|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L 338 (644)
T PRK11619 261 RLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARL 338 (644)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhc
Confidence 88887764332 22221 233344333333322445555555443322 23333343444445778888888777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006640 380 GKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMI 415 (637)
Q Consensus 380 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 415 (637)
.... .....-.--+..++...|+.++|...|+.+.
T Consensus 339 ~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 339 PMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred CHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5432 2234444556777777888888888888874
No 382
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=52.06 E-value=37 Score=23.72 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=9.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 006640 428 TIISGWCSDGSMDRAIEVFDKM 449 (637)
Q Consensus 428 ~li~~~~~~g~~~~A~~~~~~m 449 (637)
.+|.+|...|++++|.++.+++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3344444444444444444443
No 383
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=51.85 E-value=1.2e+02 Score=25.00 Aligned_cols=43 Identities=19% Similarity=0.231 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHH
Q 006640 475 WRAEEILQIMKAFGVHPQKS-TFLLLAEARRATGLTKEAKRILS 517 (637)
Q Consensus 475 ~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~eA~~~~~ 517 (637)
++..++|+.|...||--... .|...+..+-..|++.+|.++++
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44667777777777765544 56677777778888888887765
No 384
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=50.86 E-value=1.5e+02 Score=31.37 Aligned_cols=102 Identities=8% Similarity=-0.027 Sum_probs=67.9
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 006640 259 AQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRDGVD 338 (637)
Q Consensus 259 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 338 (637)
...|+...|...+............+....|.....+.|...+|..++.+..... ...+.++..+.+++....+.++|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 4467777777777666544333334555667777777777778888877776654 445567777778888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHH
Q 006640 339 EVLALMKEFRVNPDVITYSTIMNA 362 (637)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~li~~ 362 (637)
+.|++..+... .+...-+.|...
T Consensus 697 ~~~~~a~~~~~-~~~~~~~~l~~i 719 (886)
T KOG4507|consen 697 EAFRQALKLTT-KCPECENSLKLI 719 (886)
T ss_pred HHHHHHHhcCC-CChhhHHHHHHH
Confidence 88888777653 345555555443
No 385
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.84 E-value=3.8e+02 Score=29.58 Aligned_cols=102 Identities=10% Similarity=0.043 Sum_probs=55.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006640 184 IKGYGIAGKPEESVKLLDLMSREGNVKP---NLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAYAQ 260 (637)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 260 (637)
|+-+.+.+.+++|+++.+..... .| -...+...+..+.-.|++++|-...-.|... +..-|...+..+..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~---~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN---EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAE 435 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC---ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcc
Confidence 44455666777777766554332 23 2345666677777777777777777666532 45555555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH
Q 006640 261 NGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCK 295 (637)
Q Consensus 261 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 295 (637)
.++......+ +.......+..+|..++..|..
T Consensus 436 ~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 436 LDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 5544432222 1211112344556666665554
No 386
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=49.06 E-value=4.3e+02 Score=29.69 Aligned_cols=88 Identities=19% Similarity=0.170 Sum_probs=46.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHH-HHHhcCChHHHHHHHHHHHhcC---CCCCCHHHHHHHHHH
Q 006640 154 ESGNMEEAMDTFWKMKESGLTPTTS-------TYNTLIK-GYGIAGKPEESVKLLDLMSREG---NVKPNLRTYNVLVRA 222 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~~~-------~~~~li~-~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~~li~~ 222 (637)
...++++|..+..++...-..|+.. .|+.|-. .....|++++|.++.+.....- ...+....+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 4566777777776665432222211 2333322 2234566777776666554421 122334555666666
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 006640 223 WCNEKNITEAWNVMHKMAA 241 (637)
Q Consensus 223 ~~~~g~~~~A~~~~~~~~~ 241 (637)
..-.|++++|..+.....+
T Consensus 507 ~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 507 AHIRGELTQALALMQQAEQ 525 (894)
T ss_pred HHHhchHHHHHHHHHHHHH
Confidence 6667777777777666554
No 387
>COG3825 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.94 E-value=69 Score=30.51 Aligned_cols=133 Identities=14% Similarity=0.168 Sum_probs=73.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhh
Q 006640 444 EVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRA--TGLTKEAKRILSKIKN 521 (637)
Q Consensus 444 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~--~g~~~eA~~~~~~~~~ 521 (637)
.+|.++....++.+...|..|+.++-+ +-.+--++.|..+.+.-+.||..++..+-.+++. .| ++.+.+
T Consensus 4 ~ff~~lr~A~vpvs~re~llL~egl~~-~v~~~~ld~Fy~LaraaLvkde~~ldkfd~~fg~~fkG--------~E~l~d 74 (393)
T COG3825 4 CFFNELRAARVPVSVREYLLLLEGLKQ-TVVEYDLDLFYYLARAALVKDERHLDKFDQAFGAYFKG--------LEDLKD 74 (393)
T ss_pred HHHhHhhhcccccccchHHHHHHHHhh-hhhhhhhHHHHHHHHHhcCccHHHHHHHHHHHHHHhcc--------HHHhcc
Confidence 456666666666677777777776543 3333335666666555677777777655544332 22 111111
Q ss_pred ccccccccccccchHHHHHHHHhhhccCCCCCCcccccccccccCCCchhhhhhhhccccccCcccchhhhhcchhh
Q 006640 522 KERTNEMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDADSSLECSWFATTSMY 598 (637)
Q Consensus 522 ~~~~~~~~~~~~~a~~~~e~l~~~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~~~~~k~~g~swi~~~~~~ 598 (637)
.. -.+..+.-+.++++.--.+. + ++.+-+..|--...+.++++..++.-+.+-|.+||+.+|.-
T Consensus 75 ~l-------~a~ip~ewl~~~~er~ltde-e-----kaq~eAlggi~kl~Etl~e~leeq~~rh~gg~k~igtggts 138 (393)
T COG3825 75 RL-------WAKIPEEWLRKIFERVLTDE-E-----KAQVEALGGIDKLMETLKERLEEQKERHEGGSKWIGTGGTS 138 (393)
T ss_pred ch-------hccChHHHHHHHHHHhcCHH-H-----HHHHHHhcCcchhHHHHHHhHHHhhcCCCCCcceeccCCCC
Confidence 10 01222333333333111111 1 33444555666677888888888888889999999998643
No 388
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=48.89 E-value=2.7e+02 Score=27.20 Aligned_cols=93 Identities=16% Similarity=0.114 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH----H
Q 006640 425 IFTTIISGWCSDGSMDRAIEVFDKMCE----HGVSPNLKTFE-TLMWGYSEARQPWRAEEILQIMKAFGVHPQKS----T 495 (637)
Q Consensus 425 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~ 495 (637)
.+-....-|++.|+-+.|++.+.+..+ .|.+.|...+. .+.-.|....-+.+-++..+.+.+.|-..+.. +
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 444555567777777777766655432 35555554322 33334444455555555555555555444432 3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 496 FLLLAEARRATGLTKEAKRILSKI 519 (637)
Q Consensus 496 ~~~l~~~~~~~g~~~eA~~~~~~~ 519 (637)
|..+- |....++.+|-.+|-..
T Consensus 186 Y~Gly--~msvR~Fk~Aa~Lfld~ 207 (393)
T KOG0687|consen 186 YQGLY--CMSVRNFKEAADLFLDS 207 (393)
T ss_pred HHHHH--HHHHHhHHHHHHHHHHH
Confidence 33332 22334566666665544
No 389
>PHA02875 ankyrin repeat protein; Provisional
Probab=48.01 E-value=3.2e+02 Score=27.91 Aligned_cols=76 Identities=11% Similarity=0.107 Sum_probs=35.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHHcCC
Q 006640 223 WCNEKNITEAWNVMHKMAASGMKPDVVT--YNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGR--TCGIIISGYCKEGK 298 (637)
Q Consensus 223 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~ 298 (637)
.+..|+.+-+ +.+.+.|..|+... ..+.+...+..|+.+-+ +.+.+.|..|+.. .....+...+..|+
T Consensus 9 A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 3445665443 33444565555432 23344555566666533 3334445444322 11223444556666
Q ss_pred HHHHHHHH
Q 006640 299 IKEALRFA 306 (637)
Q Consensus 299 ~~~A~~~~ 306 (637)
.+.+..++
T Consensus 81 ~~~v~~Ll 88 (413)
T PHA02875 81 VKAVEELL 88 (413)
T ss_pred HHHHHHHH
Confidence 65544433
No 390
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=47.06 E-value=1.3e+02 Score=23.07 Aligned_cols=22 Identities=23% Similarity=0.134 Sum_probs=11.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 006640 184 IKGYGIAGKPEESVKLLDLMSR 205 (637)
Q Consensus 184 i~~~~~~g~~~~A~~~~~~m~~ 205 (637)
.......|++++|...+++..+
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3344455555555555555443
No 391
>PHA02875 ankyrin repeat protein; Provisional
Probab=46.88 E-value=3.3e+02 Score=27.78 Aligned_cols=11 Identities=9% Similarity=0.141 Sum_probs=5.1
Q ss_pred HHHHHHHHHHC
Q 006640 442 AIEVFDKMCEH 452 (637)
Q Consensus 442 A~~~~~~m~~~ 452 (637)
..+-.+.|...
T Consensus 299 C~~ei~~mk~~ 309 (413)
T PHA02875 299 CIIELRRIKSE 309 (413)
T ss_pred HHHHHHHHHhh
Confidence 33444555543
No 392
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.76 E-value=3.2e+02 Score=27.56 Aligned_cols=61 Identities=13% Similarity=0.186 Sum_probs=37.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 75 MTKLMNSLIERGKPQEAQAIFNNLIEG--GHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEE 135 (637)
Q Consensus 75 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 135 (637)
+..+...|..+|+++.|++.|.+..+- ..+..+..|-.+|.+-.-.|+|........+..+
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 456677778888888888888875431 0112233455556665666777666666665554
No 393
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=46.76 E-value=2.7e+02 Score=26.71 Aligned_cols=84 Identities=20% Similarity=0.167 Sum_probs=40.7
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 006640 368 FMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQ-------EPEKAEELLMTMIESGFHPNVVIFTTIISGWCS----D 436 (637)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 436 (637)
+..+|...++...+.|..+...+...+...|.... +...|...+.++...+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 44555555555555543221222333333333221 1235666666666554 33344444443322 3
Q ss_pred CCHHHHHHHHHHHHHCCC
Q 006640 437 GSMDRAIEVFDKMCEHGV 454 (637)
Q Consensus 437 g~~~~A~~~~~~m~~~~~ 454 (637)
.+.++|...|++..+.|.
T Consensus 205 ~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred cCHHHHHHHHHHHHHCCC
Confidence 366777777777776653
No 394
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=46.29 E-value=92 Score=27.87 Aligned_cols=32 Identities=13% Similarity=0.210 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 455 SPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 455 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
.|++.+|..++.++...|+.++|.+..+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35555555555555555555555555555443
No 395
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=46.06 E-value=77 Score=20.74 Aligned_cols=32 Identities=6% Similarity=0.000 Sum_probs=18.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006640 469 SEARQPWRAEEILQIMKAFGVHPQKSTFLLLA 500 (637)
Q Consensus 469 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 500 (637)
.+.|...++..++++|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 44555556666666666666655555554443
No 396
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.41 E-value=26 Score=33.92 Aligned_cols=116 Identities=18% Similarity=0.148 Sum_probs=65.3
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHH
Q 006640 400 REQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK-TFETLMWGYSEARQPWRAE 478 (637)
Q Consensus 400 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~ 478 (637)
..|.++.|++.|...++.+ ++....|..-.+++.+.++...|++-+....+. .||.. -|-.-..+-.-.|.+.+|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHH
Confidence 3556777777777666654 455555555666666777777777777666663 34432 2322233334467777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 006640 479 EILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIK 520 (637)
Q Consensus 479 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 520 (637)
..|....+.++.+....+. =.+.-+++..++-.+..++..
T Consensus 203 ~dl~~a~kld~dE~~~a~l--KeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 203 HDLALACKLDYDEANSATL--KEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHHHhccccHHHHHHH--HHhccchhhhhhchhHHHHHH
Confidence 7777776666555544332 223344455555444444443
No 397
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=45.12 E-value=3.1e+02 Score=26.95 Aligned_cols=78 Identities=6% Similarity=-0.002 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh---cCCHHHHHHH
Q 006640 159 EEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCN---EKNITEAWNV 235 (637)
Q Consensus 159 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~ 235 (637)
+.-+.++++..+.++ .+...+..++..+.+..+.++..+.++++.... +-+...|...+..... .-.++....+
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~--~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN--PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 344455555555533 255556666666666666666666666666653 3345556555554433 1234444444
Q ss_pred HHHH
Q 006640 236 MHKM 239 (637)
Q Consensus 236 ~~~~ 239 (637)
|.+.
T Consensus 125 y~~~ 128 (321)
T PF08424_consen 125 YEKC 128 (321)
T ss_pred HHHH
Confidence 4443
No 398
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=44.87 E-value=3.1e+02 Score=26.87 Aligned_cols=115 Identities=13% Similarity=0.109 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh------cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhH
Q 006640 404 PEKAEELLMTMIESGFHPNVVIFTTIISGWCS------DGSMDRAIEVFDKMCEHGVSPNLK-TFETLMWGYSEARQPWR 476 (637)
Q Consensus 404 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~------~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~ 476 (637)
++++..++.+....+ .|.+......|.++.. .-+|.....+|+-+.... |+++ +.|-- -+....--++-
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~a--pSPvV~LNRA-VAla~~~Gp~a 347 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAA--PSPVVTLNRA-VALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhC--CCCeEeehHH-HHHHHhhhHHh
Confidence 567777777777776 4777777777766542 346777777888777644 4444 33322 23444444566
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 006640 477 AEEILQIMKAFG-VHPQKSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 477 A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
++...+-+...+ +.--...+..-.+.+.+.|+.+||..-|++....
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 666666654431 2211223445567888999999999998887655
No 399
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=43.53 E-value=24 Score=29.04 Aligned_cols=31 Identities=32% Similarity=0.542 Sum_probs=22.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006640 154 ESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKG 186 (637)
Q Consensus 154 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 186 (637)
+-|.-.+|..+|.+|.+.|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 345666788899999998887774 6776654
No 400
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=42.74 E-value=74 Score=22.23 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=7.6
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 006640 254 IATAYAQNGEADQAEEVIVE 273 (637)
Q Consensus 254 li~~~~~~g~~~~A~~~~~~ 273 (637)
+|.++...|++++|.+++++
T Consensus 29 vI~gllqlg~~~~a~eYi~~ 48 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKE 48 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33334444444444443333
No 401
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=42.34 E-value=3.2e+02 Score=26.85 Aligned_cols=79 Identities=24% Similarity=0.305 Sum_probs=54.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHH-H
Q 006640 392 SILAKGYVREQEPEKAEELLMTMIES---GFHPNVVIF--TTIISGWCSDGSMDRAIEVFDKMCE-----HGVSPNLK-T 460 (637)
Q Consensus 392 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~-~ 460 (637)
..++...-+.++.++|++.++++.+. .-.|+.+.| ..+..++...|+.+++.+++++..+ -+++|+.. .
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~ 158 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS 158 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh
Confidence 34444556777899999999988753 225666655 4556677788999999999888776 47777655 4
Q ss_pred HHHHHHHHHh
Q 006640 461 FETLMWGYSE 470 (637)
Q Consensus 461 ~~~l~~~~~~ 470 (637)
|..+.+-|.+
T Consensus 159 fY~lssqYyk 168 (380)
T KOG2908|consen 159 FYSLSSQYYK 168 (380)
T ss_pred HHHHHHHHHH
Confidence 6666554443
No 402
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=42.33 E-value=3.7e+02 Score=31.17 Aligned_cols=193 Identities=13% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHH--
Q 006640 288 IIISGYCKEGKIKEALRFARTMKEYGVHPN-------LVIFNLLIKGFVEIMDRDGVDEVLALMKEFRVNPDVITYST-- 358 (637)
Q Consensus 288 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 358 (637)
..+.-+...+++.+| |.-|+++.+..| ..-+..+-...-+.++.+-.-.++..+.+..+......-..
T Consensus 699 ~~ir~~Ld~~~Y~~A---f~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt~tmY~~~~~~ 775 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEA---FELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVTKTMYKDTYPP 775 (928)
T ss_pred HHHHHHHhhccHHHH---HHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhccccccccccccccccc
Q ss_pred --------HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006640 359 --------IMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQ--EPEKAEELLMTMIESGFHPNVVIFTT 428 (637)
Q Consensus 359 --------li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~ 428 (637)
-.......++++..-+.+...... ......-...++.+|++.+ ++++|+.+..++.+.+...-..+...
T Consensus 776 ~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~alky 854 (928)
T PF04762_consen 776 SSEAQPNSNSSTASSESKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEALKY 854 (928)
T ss_pred ccccccccccCCCccccHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHHHhH
Q ss_pred HHHHHHhcCCHHHHHHHHH----HHHHCCCCCCHHHHHHHHHHHH-------------hcCChhHHHHHHHHH
Q 006640 429 IISGWCSDGSMDRAIEVFD----KMCEHGVSPNLKTFETLMWGYS-------------EARQPWRAEEILQIM 484 (637)
Q Consensus 429 li~~~~~~g~~~~A~~~~~----~m~~~~~~p~~~~~~~l~~~~~-------------~~g~~~~A~~~~~~m 484 (637)
|+..---..-++.|+.+|+ .|....-.-|+.-|..++.-+. +.|++++|++-+.++
T Consensus 855 l~fLvDvn~Ly~~ALG~YDl~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~~rry~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 855 LCFLVDVNKLYDVALGTYDLELALMVAQQSQKDPKEYLPFLQELQKLPPLYRRYKIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred heeeccHHHHHHHHhhhcCHHHHHHHHHHhccChHHHHHHHHHHHhCChhheeeeHhhhhCCHHHHHHHHHhh
No 403
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=41.95 E-value=1.3e+02 Score=26.99 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=12.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006640 211 PNLRTYNVLVRAWCNEKNITEAWNVMHKM 239 (637)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 239 (637)
|+..+|..++..+...|+.++|.++..++
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444444444444444444444433
No 404
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=41.76 E-value=3e+02 Score=27.11 Aligned_cols=63 Identities=14% Similarity=0.180 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006640 405 EKAEELLMTMIESGFHPNV----VIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYS 469 (637)
Q Consensus 405 ~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 469 (637)
++...++.++++. -|+. ..|-.++......|.++.++.+|++++..|..|-...-..++..+-
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4566666666654 3443 4677777777777888888888888887777776666555555544
No 405
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=41.15 E-value=1.6e+02 Score=22.46 Aligned_cols=54 Identities=19% Similarity=0.242 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 006640 139 DPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTP-TTSTYNTLIKGYGIAGK 192 (637)
Q Consensus 139 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~ 192 (637)
|.|....-.+...+...|++++|++.+-++.+..... +...-..|+..+...|.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4455555566666666666666666666665543221 23344444444444443
No 406
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=41.03 E-value=58 Score=33.25 Aligned_cols=85 Identities=16% Similarity=0.099 Sum_probs=35.2
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 006640 119 IQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVK 198 (637)
Q Consensus 119 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 198 (637)
..+.++.|..++.++++.. +..+..|..-..++.+.+++..|+.=+...++..+. -...|..-..++.+.+.+.+|+.
T Consensus 16 ~~~~fd~avdlysKaI~ld-pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIELD-PNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred ccchHHHHHHHHHHHHhcC-CcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHHHHHHH
Confidence 3344555555555555432 112222222224445555555555544444443211 11222222233334444455555
Q ss_pred HHHHHHh
Q 006640 199 LLDLMSR 205 (637)
Q Consensus 199 ~~~~m~~ 205 (637)
.|+....
T Consensus 94 ~l~~~~~ 100 (476)
T KOG0376|consen 94 DLEKVKK 100 (476)
T ss_pred HHHHhhh
Confidence 5554444
No 407
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=40.67 E-value=1.8e+02 Score=22.82 Aligned_cols=10 Identities=20% Similarity=0.504 Sum_probs=3.8
Q ss_pred cCCHHHHHHH
Q 006640 155 SGNMEEAMDT 164 (637)
Q Consensus 155 ~g~~~~A~~~ 164 (637)
.|++++|..+
T Consensus 52 rG~Yq~Al~l 61 (115)
T TIGR02508 52 RGDYQSALQL 61 (115)
T ss_pred cchHHHHHHh
Confidence 3333333333
No 408
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=40.35 E-value=66 Score=30.84 Aligned_cols=37 Identities=24% Similarity=0.413 Sum_probs=20.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006640 426 FTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFE 462 (637)
Q Consensus 426 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 462 (637)
|+..|....+.||+++|+.+++|+.+.|+.--..+|.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 4455666666666666666666666665543333443
No 409
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=40.14 E-value=1.9e+02 Score=23.74 Aligned_cols=44 Identities=20% Similarity=0.185 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006640 475 WRAEEILQIMKAFGVHPQ-KSTFLLLAEARRATGLTKEAKRILSK 518 (637)
Q Consensus 475 ~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~eA~~~~~~ 518 (637)
+++.++|+.|...|+--. ...|...+..+...|++++|.++++.
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 377778888876666554 34677777778888888888887764
No 410
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=39.93 E-value=4.2e+02 Score=26.88 Aligned_cols=54 Identities=9% Similarity=0.157 Sum_probs=30.6
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhc--CCHHHHHHHHHHHHH
Q 006640 116 ALTIQKRFNSIHSIMSQVEENGMDPDSI--FFNAVINAFSES--GNMEEAMDTFWKMKE 170 (637)
Q Consensus 116 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~--g~~~~A~~~~~~m~~ 170 (637)
.+...+++..|.+++..+... ++++.. .+..+..+|... -++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 334566777777777776665 344333 444444555443 356666666666554
No 411
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=39.54 E-value=1.2e+02 Score=20.46 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=4.3
Q ss_pred CCHHHHHHHHHHH
Q 006640 507 GLTKEAKRILSKI 519 (637)
Q Consensus 507 g~~~eA~~~~~~~ 519 (637)
|++++|.++++.+
T Consensus 15 ~~Y~~A~~~~~~l 27 (53)
T PF14853_consen 15 GEYEKARRYCDAL 27 (53)
T ss_dssp T-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 3333333333333
No 412
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=39.30 E-value=1.1e+02 Score=20.02 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=21.0
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006640 81 SLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLA 115 (637)
Q Consensus 81 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 115 (637)
...+.|-..++..++++|.+.|+.-+...+..+++
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 33455666666666666666666666665555543
No 413
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=39.17 E-value=1.2e+02 Score=20.43 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=8.4
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 006640 432 GWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~~ 451 (637)
++.+.|++++|.+..+.+++
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 34444444444444444444
No 414
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=38.97 E-value=33 Score=25.39 Aligned_cols=63 Identities=13% Similarity=0.046 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHhhccccccccccccchHHHHHHHHh-hhccCCCCCCcccccccccccCCCchhhhhhhhccc
Q 006640 508 LTKEAKRILSKIKNKERTNEMEAEEDIPVESLERLYH-KEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLL 580 (637)
Q Consensus 508 ~~~eA~~~~~~~~~~~~~~~~~~~~~~a~~~~e~l~~-~~~~~~~y~~~~~L~~~y~~~g~~~~a~~~r~~~~~ 580 (637)
.++.|...+++..+.... +..+.|...+++.++ +...-+.. +. .+.....|++|.+++..|..
T Consensus 4 ~~~~A~~~I~kaL~~dE~----g~~e~Al~~Y~~gi~~l~eg~ai~---~~---~~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 4 YYKQAFEEISKALRADEW----GDKEQALAHYRKGLRELEEGIAVP---VP---SAGVGSQWERARRLQQKMKT 67 (79)
T ss_pred HHHHHHHHHHHHhhhhhc----CCHHHHHHHHHHHHHHHHHHcCCC---CC---cccccHHHHHHHHHHHHHHH
Confidence 355666666666544332 444556555555543 11111110 10 34556789999999988853
No 415
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.91 E-value=6.4e+02 Score=28.75 Aligned_cols=27 Identities=15% Similarity=0.405 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006640 74 SMTKLMNSLIERGKPQEAQAIFNNLIE 100 (637)
Q Consensus 74 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 100 (637)
-|..|+-.|...|+.++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 366778888888888888888888875
No 416
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=38.16 E-value=1.4e+02 Score=22.82 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=14.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 006640 219 LVRAWCNEKNITEAWNVMHKMAA 241 (637)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~~~~ 241 (637)
+.......|+.++|...+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 44455666777777777766653
No 417
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=37.92 E-value=4e+02 Score=26.08 Aligned_cols=26 Identities=12% Similarity=0.183 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006640 214 RTYNVLVRAWCNEKNITEAWNVMHKM 239 (637)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~~ 239 (637)
..+.....-|++-|+-+.|++.+++.
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34455555666666666666655544
No 418
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=37.88 E-value=3e+02 Score=24.62 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=13.9
Q ss_pred HHHcCCHHHHHHHHHHHh
Q 006640 503 RRATGLTKEAKRILSKIK 520 (637)
Q Consensus 503 ~~~~g~~~eA~~~~~~~~ 520 (637)
..+.|++++|.++++-|.
T Consensus 131 ~l~~~~~~~Ae~~~~~ME 148 (204)
T COG2178 131 LLRKGSFEEAERFLKFME 148 (204)
T ss_pred HHHhccHHHHHHHHHHHH
Confidence 346788899998888874
No 419
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=37.12 E-value=1.5e+02 Score=31.96 Aligned_cols=92 Identities=5% Similarity=-0.020 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006640 179 TYNTLIKGYGIAGKPEESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKPDVVTYNTIATAY 258 (637)
Q Consensus 179 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 258 (637)
.|..-+..+..+++.. ....+.+...-. -.+...-.-++..|.+.|-.+.|.++.+.+-..-. ...-|..-+..+
T Consensus 374 lW~vai~yL~~c~~~g--~~~i~~lL~~~p-~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~ 448 (566)
T PF07575_consen 374 LWQVAIGYLSSCPDEG--RERIEELLPRVP-LDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWF 448 (566)
T ss_dssp THHHHHHHHHS-SSS---HHHHHHHGGG-----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCChhh--HHHHHHHHhhCC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHH
Confidence 3554444444444322 444444443321 13444556666666666666666666665533211 223344555556
Q ss_pred HHcCCHHHHHHHHHHHH
Q 006640 259 AQNGEADQAEEVIVEME 275 (637)
Q Consensus 259 ~~~g~~~~A~~~~~~~~ 275 (637)
.+.|+......+-+.+.
T Consensus 449 ~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 449 IRAGDYSLVTRIADRLL 465 (566)
T ss_dssp H----------------
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 66666665555554444
No 420
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=37.06 E-value=3.5e+02 Score=25.13 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 006640 456 PNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQ 492 (637)
Q Consensus 456 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 492 (637)
|.+.....++..|. .+++++|.+.+.++.+.|+.|.
T Consensus 237 PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 237 PHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred CChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHH
Confidence 44555555555443 3455666666666666665554
No 421
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=36.81 E-value=1.9e+02 Score=22.05 Aligned_cols=31 Identities=23% Similarity=0.171 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 006640 176 TTSTYNTLIKGYGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 206 (637)
|......+...+...|++++|++.+-.+.+.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3344444444555555555555555444443
No 422
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=36.79 E-value=2.5e+02 Score=24.83 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=12.0
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 006640 432 GWCSDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 432 ~~~~~g~~~~A~~~~~~m~~ 451 (637)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 45566666666666666554
No 423
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=36.49 E-value=2.2e+02 Score=22.65 Aligned_cols=14 Identities=14% Similarity=0.057 Sum_probs=5.1
Q ss_pred cCChHHHHHHHHHH
Q 006640 190 AGKPEESVKLLDLM 203 (637)
Q Consensus 190 ~g~~~~A~~~~~~m 203 (637)
.|.-+++...+.++
T Consensus 82 lGL~~~~e~~l~rl 95 (116)
T PF09477_consen 82 LGLASALESRLTRL 95 (116)
T ss_dssp CT-HHHHHHHHHHH
T ss_pred hccHHHHHHHHHHH
Confidence 33333333333333
No 424
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=35.60 E-value=5.2e+02 Score=26.74 Aligned_cols=125 Identities=11% Similarity=0.107 Sum_probs=83.2
Q ss_pred HHHHHHcCChhHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006640 79 MNSLIERGKPQEAQ-AIFNNLIEGGHKPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSESGN 157 (637)
Q Consensus 79 ~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 157 (637)
|......|+...|- ++|+.+....-.|+.....+ ......|+++.+...+....+. +.....+...+++..-+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 44445678877664 45555554333344443333 3455678999998888766543 24455677788888888999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 006640 158 MEEAMDTFWKMKESGLTPTTSTYNTLIKGYGIAGKPEESVKLLDLMSREG 207 (637)
Q Consensus 158 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 207 (637)
++.|...-+-|....++ +..........--+.|-++++...+.++....
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 99999999888877666 55555444444445677888888888876653
No 425
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.54 E-value=48 Score=32.22 Aligned_cols=116 Identities=16% Similarity=0.089 Sum_probs=76.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHH
Q 006640 364 STAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNV-VIFTTIISGWCSDGSMDRA 442 (637)
Q Consensus 364 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A 442 (637)
...|.++.|++.|...+... ++....|..-...+.+.+.+..|++-+....+. +||. .-|-.-..+....|++++|
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHH
Confidence 35677888888888887764 455666666677788888888888888887765 3443 2333334445567899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006640 443 IEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIM 484 (637)
Q Consensus 443 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 484 (637)
...|....+.++.+.... .+-...-+.+..++-...+++.
T Consensus 202 a~dl~~a~kld~dE~~~a--~lKeV~p~a~ki~e~~~k~er~ 241 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSA--TLKEVFPNAGKIEEHRRKYERA 241 (377)
T ss_pred HHHHHHHHhccccHHHHH--HHHHhccchhhhhhchhHHHHH
Confidence 999999888765544333 3333344455555554444444
No 426
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=34.85 E-value=86 Score=17.51 Aligned_cols=13 Identities=23% Similarity=0.360 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 006640 404 PEKAEELLMTMIE 416 (637)
Q Consensus 404 ~~~A~~~~~~~~~ 416 (637)
.+.|..+|+++..
T Consensus 3 ~~~~r~i~e~~l~ 15 (33)
T smart00386 3 IERARKIYERALE 15 (33)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 427
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=34.64 E-value=2.9e+02 Score=23.45 Aligned_cols=80 Identities=13% Similarity=0.119 Sum_probs=37.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----CCChhhHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006640 251 YNTIATAYAQNGEADQAEEVIVEMEHNGV-----QPNGRTCGIIISGYCKEGK-IKEALRFARTMKEYGVHPNLVIFNLL 324 (637)
Q Consensus 251 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l 324 (637)
.+.++.-....+++.....+++.+..-.. ..+...|..++.+..+... ---+..+|.-+.+.+.+.+..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 44555555555666655555555421100 1233445555555544333 23344455555554445555555555
Q ss_pred HHHHHH
Q 006640 325 IKGFVE 330 (637)
Q Consensus 325 l~~~~~ 330 (637)
+.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 555443
No 428
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=34.31 E-value=2.1e+02 Score=24.22 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=14.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 006640 254 IATAYAQNGEADQAEEVIVEMEHNGVQPN 282 (637)
Q Consensus 254 li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 282 (637)
++..+.+.++.-.|.++++++.+.++..+
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~is 54 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGIS 54 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCC
Confidence 44444444444555555555555444333
No 429
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=34.23 E-value=5e+02 Score=26.11 Aligned_cols=100 Identities=11% Similarity=0.062 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHH-------cCC------------------CCCHHHHHHH---HHHHHhcCC
Q 006640 106 SLVTYTTLLAALTIQKRFNSIHSIMSQVEE-------NGM------------------DPDSIFFNAV---INAFSESGN 157 (637)
Q Consensus 106 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~~------------------~~~~~~~~~l---i~~~~~~g~ 157 (637)
.+.++..+-..+..+|+...|.+++++++- ..+ .-|...|.++ +..+.+.|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 566677777777778887777776666531 011 1234444443 455667777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHh
Q 006640 158 MEEAMDTFWKMKESGLTPTTSTYNTLIKGYG-IAGKPEESVKLLDLMSR 205 (637)
Q Consensus 158 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~ 205 (637)
+..|.++.+-+...++.-|+.....+|+.|+ ++++++--+++.+....
T Consensus 119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 8888887777777766656666666666654 45666666666665443
No 430
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=34.08 E-value=4.5e+02 Score=25.62 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=13.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc
Q 006640 183 LIKGYGIAGKPEESVKLLDLMSRE 206 (637)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~m~~~ 206 (637)
|.-+--+.|+..+|.+.|+++.+.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke 304 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE 304 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh
Confidence 333334556666666666666553
No 431
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=33.82 E-value=3.2e+02 Score=24.26 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=16.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 006640 394 LAKGYVREQEPEKAEELLMTMIE 416 (637)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~~~ 416 (637)
.+-.|.+.|.+++|.+++++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 34467788888888888887765
No 432
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=33.34 E-value=2.4e+02 Score=26.10 Aligned_cols=23 Identities=17% Similarity=0.086 Sum_probs=15.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCC
Q 006640 397 GYVREQEPEKAEELLMTMIESGF 419 (637)
Q Consensus 397 ~~~~~g~~~~A~~~~~~~~~~~~ 419 (637)
.....|+++.|+++..-+++.|.
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l 114 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGL 114 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCC
Confidence 34566777777777777766653
No 433
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=33.25 E-value=4.3e+02 Score=25.06 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHH
Q 006640 387 DAHAYSILAKGYVREQEPEKAEELL 411 (637)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~ 411 (637)
++.....+...|.+.|++.+|+..|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5666677777777777777776555
No 434
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=33.19 E-value=85 Score=30.12 Aligned_cols=28 Identities=7% Similarity=0.147 Sum_probs=14.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 006640 111 TTLLAALTIQKRFNSIHSIMSQVEENGM 138 (637)
Q Consensus 111 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 138 (637)
+..|....+.||.++|+.+++++.+.|+
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3455555555555555555555555553
No 435
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=32.86 E-value=8.3e+02 Score=28.29 Aligned_cols=48 Identities=17% Similarity=0.073 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006640 104 KPSLVTYTTLLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFNAVINAFSES 155 (637)
Q Consensus 104 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 155 (637)
.+|+.+-...+..+...+..+ +...+..+++ .+|..+-...+.++.+.
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l 679 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLREL 679 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHH
Confidence 456666666666666655433 3344444443 34444444444444433
No 436
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=32.69 E-value=5.4e+02 Score=26.07 Aligned_cols=53 Identities=11% Similarity=0.203 Sum_probs=29.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 006640 398 YVREQEPEKAEELLMTMIESGFHPNVV--IFTTIISGWC--SDGSMDRAIEVFDKMCE 451 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~--~~g~~~~A~~~~~~m~~ 451 (637)
+.+.+++..|.++|..+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34566667777777666654 344333 3333444433 35566677777776654
No 437
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=32.47 E-value=2.4e+02 Score=26.45 Aligned_cols=58 Identities=9% Similarity=0.098 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006640 217 NVLVRAWCNEKNITEAWNVMHKMAA----SG-MKPDVVTYNTIATAYAQNGEADQAEEVIVEM 274 (637)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~~~~----~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 274 (637)
..+..-|...|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+--++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455566666666666666666532 12 2233444555666667777777666655444
No 438
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=31.72 E-value=2.9e+02 Score=22.66 Aligned_cols=43 Identities=9% Similarity=0.095 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006640 195 ESVKLLDLMSREGNVKPNLRTYNVLVRAWCNEKNITEAWNVMH 237 (637)
Q Consensus 195 ~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 237 (637)
.+.++|..|...+-...-+..|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444444433222223344444444444444444444443
No 439
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=30.29 E-value=4.6e+02 Score=24.49 Aligned_cols=114 Identities=11% Similarity=0.029 Sum_probs=51.7
Q ss_pred CChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHH
Q 006640 121 KRFNSIHSIMSQVEENGMDPDS-IFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTS-TYNTLIKGYGIAGKPEESVK 198 (637)
Q Consensus 121 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~ 198 (637)
..++.|...|.+.+.. .|++ .-|+.-+..+.+..+++.+..--.+..+. .|+.+ ....+..+......+++|+.
T Consensus 24 k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred hhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHHHH
Confidence 3455555555555543 2333 33444455555555555555444444443 23332 22333444555556666666
Q ss_pred HHHHHHhc---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006640 199 LLDLMSRE---GNVKPNLRTYNVLVRAWCNEKNITEAWNVMHK 238 (637)
Q Consensus 199 ~~~~m~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 238 (637)
.+.+.... ..+++-...+..|..+--+.=...+..++.++
T Consensus 100 ~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 100 VLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 66555321 11223334444444443333333444444433
No 440
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=30.09 E-value=2.4e+02 Score=26.44 Aligned_cols=21 Identities=14% Similarity=0.415 Sum_probs=11.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 006640 429 IISGWCSDGSMDRAIEVFDKM 449 (637)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~m 449 (637)
|...|...|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344455555555555555555
No 441
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=29.45 E-value=3.4e+02 Score=22.95 Aligned_cols=64 Identities=17% Similarity=0.155 Sum_probs=41.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006640 445 VFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLT 509 (637)
Q Consensus 445 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 509 (637)
+.+.+.+.|++++..= ..++..+...+..-.|.++++.+.+.+...+..|....++.+...|-+
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 3344455666655432 235566666666678888888888777666677766777777777753
No 442
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=29.41 E-value=8.7e+02 Score=27.47 Aligned_cols=88 Identities=16% Similarity=0.094 Sum_probs=48.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCChh-------hHHHHHH-HHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHH
Q 006640 259 AQNGEADQAEEVIVEMEHNGVQPNGR-------TCGIIIS-GYCKEGKIKEALRFARTMKEY----GVHPNLVIFNLLIK 326 (637)
Q Consensus 259 ~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~li~-~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~ll~ 326 (637)
....++++|..++.++...-..|+.. .++.+-. .....|++++|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34567777777777765432222211 2233221 223456777777776666433 12334455566666
Q ss_pred HHHHcCCHhHHHHHHHHHHh
Q 006640 327 GFVEIMDRDGVDEVLALMKE 346 (637)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~ 346 (637)
+..-.|++++|..+..+..+
T Consensus 506 a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred HHHHhchHHHHHHHHHHHHH
Confidence 66667777777776665544
No 443
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=29.40 E-value=5.9e+02 Score=27.67 Aligned_cols=75 Identities=13% Similarity=0.154 Sum_probs=44.4
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 006640 323 LLIKGFVEIMDRDGVDEVLALMKEFR--VNPDVITYSTIMNAWSTAGFMD------KCKEIFDDMGKAGIKPDAHAYSIL 394 (637)
Q Consensus 323 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~l 394 (637)
+++.+|...|++..+..+++.+...+ -+.-...+|.-+....+.|.++ .|.+.++... +.-|..+|..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 67778888888888888777775542 2222445666666677777654 2333333332 34466666666
Q ss_pred HHHHHH
Q 006640 395 AKGYVR 400 (637)
Q Consensus 395 ~~~~~~ 400 (637)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 655433
No 444
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=28.31 E-value=5.6e+02 Score=24.85 Aligned_cols=66 Identities=17% Similarity=0.101 Sum_probs=35.2
Q ss_pred CCHHHHHHHH-HHHHHCCCCCCh----hhHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh
Q 006640 262 GEADQAEEVI-VEMEHNGVQPNG----RTCGIIISGYCKEGK-IKEALRFARTMKEYGVHPNLVIFNLLIKGFVEIMDRD 335 (637)
Q Consensus 262 g~~~~A~~~~-~~~~~~~~~~~~----~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 335 (637)
..+++..... ++|.+.++ |+. .+|..++++---+.+ ---|.+.++.+ .+|..++.+++..|+.+
T Consensus 269 ~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrhl---------K~yaPLL~af~s~g~sE 338 (412)
T KOG2297|consen 269 DPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRHL---------KQYAPLLAAFCSQGQSE 338 (412)
T ss_pred CCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHH---------HhhhHHHHHHhcCChHH
Confidence 3444444444 45666655 443 356666665433221 11233333333 46888888888888765
Q ss_pred HH
Q 006640 336 GV 337 (637)
Q Consensus 336 ~a 337 (637)
..
T Consensus 339 L~ 340 (412)
T KOG2297|consen 339 LE 340 (412)
T ss_pred HH
Confidence 43
No 445
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=28.27 E-value=8.5e+02 Score=26.96 Aligned_cols=24 Identities=4% Similarity=0.048 Sum_probs=14.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 006640 288 IIISGYCKEGKIKEALRFARTMKE 311 (637)
Q Consensus 288 ~li~~~~~~g~~~~A~~~~~~~~~ 311 (637)
.+..+|.-..+.+.+.++++++.+
T Consensus 215 ~vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 215 SVCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred eeeeeeEEcCCHHHHHHHHHHHHh
Confidence 345555566666666666666665
No 446
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=28.05 E-value=1.7e+02 Score=20.78 Aligned_cols=27 Identities=7% Similarity=0.145 Sum_probs=10.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcC
Q 006640 111 TTLLAALTIQKRFNSIHSIMSQVEENG 137 (637)
Q Consensus 111 ~~ll~~~~~~~~~~~a~~~~~~~~~~~ 137 (637)
+.++..++...-.+.++..+.++.+.|
T Consensus 12 ~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 12 NQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333333333333333333333333333
No 447
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=27.93 E-value=24 Score=28.56 Aligned_cols=10 Identities=40% Similarity=0.943 Sum_probs=8.7
Q ss_pred chhhhhcchhhhhc
Q 006640 588 ECSWFATTSMYLSH 601 (637)
Q Consensus 588 g~swi~~~~~~h~~ 601 (637)
||||+++ |.|
T Consensus 2 ~~~w~~~----h~F 11 (116)
T PF14432_consen 2 GCSWIEV----HSF 11 (116)
T ss_pred CCCccce----EEE
Confidence 8999999 883
No 448
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.68 E-value=6.3e+02 Score=25.22 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=23.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHhcCChhHHHHHHHHHHH
Q 006640 434 CSDGSMDRAIEVFDKMCEHGVSPNLKTFETLM----WGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 434 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~----~~~~~~g~~~~A~~~~~~m~~ 486 (637)
.+.++..-|......+.++++..=..||.+|- .-..+.+..++|.+..-+|.+
T Consensus 288 ~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie 344 (422)
T KOG2582|consen 288 TKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIE 344 (422)
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 34455555555555555443333333444441 112233444455554444443
No 449
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=27.38 E-value=5.8e+02 Score=24.78 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=30.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006640 409 ELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYS 469 (637)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 469 (637)
++++.+.+.++.|.-.++.-+.-.+.+.=.+.+.+.+|+.+.. |+.-|..|+..|+
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHH
Confidence 4555555555566655555555555555556666666666554 3333444544443
No 450
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=26.96 E-value=4.3e+02 Score=23.06 Aligned_cols=60 Identities=10% Similarity=0.108 Sum_probs=38.1
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 006640 450 CEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTK 510 (637)
Q Consensus 450 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 510 (637)
.+.|++++..-. .++..+...+..-.|.++++.+.+.+..++..|....++.+.+.|.+.
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 345666554433 334444444556678888888877777777777666777777777543
No 451
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=26.89 E-value=1.2e+02 Score=21.59 Aligned_cols=49 Identities=10% Similarity=0.165 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006640 140 PDSIFFNAVINAFSESGNMEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI 189 (637)
Q Consensus 140 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 189 (637)
|....++.++..+++..-.++++..+.+..+.|.- +..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 44556677777777777777777777777777653 55666665655554
No 452
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=26.65 E-value=2.9e+02 Score=21.01 Aligned_cols=14 Identities=21% Similarity=0.285 Sum_probs=6.4
Q ss_pred CCHHHHHHHHHHHH
Q 006640 156 GNMEEAMDTFWKMK 169 (637)
Q Consensus 156 g~~~~A~~~~~~m~ 169 (637)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444444
No 453
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=26.33 E-value=6e+02 Score=24.55 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=15.5
Q ss_pred CChhhHHHHHHHHHHcCCHHHHH
Q 006640 281 PNGRTCGIIISGYCKEGKIKEAL 303 (637)
Q Consensus 281 ~~~~~~~~li~~~~~~g~~~~A~ 303 (637)
.|+..|..+..+|.-.|+...+.
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHHH
Confidence 46677777777777777655544
No 454
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=26.01 E-value=3.4e+02 Score=26.62 Aligned_cols=93 Identities=15% Similarity=0.086 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHH
Q 006640 390 AYSILAKGYVREQEPEKAEELLMTMIESGF-HP--NVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLK-TFETLM 465 (637)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~ 465 (637)
.|--=.+-|.+..++..|...|.+-++... .| +.+.|+.-..+-...|++..|+.--...+.. .|+.. .|..=.
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--KPTHLKAYIRGA 160 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--Ccchhhhhhhhh
Confidence 444456677788888888888877665421 22 3456666666666777888877777777663 35433 344344
Q ss_pred HHHHhcCChhHHHHHHHHH
Q 006640 466 WGYSEARQPWRAEEILQIM 484 (637)
Q Consensus 466 ~~~~~~g~~~~A~~~~~~m 484 (637)
.++....++++|....++.
T Consensus 161 kc~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 4555555666665554443
No 455
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=25.75 E-value=3.6e+02 Score=27.52 Aligned_cols=99 Identities=15% Similarity=0.145 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHcCChhHHHHHHHH-------HHhCCCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHH-----
Q 006640 71 TVRSMTKLMNSLIERGKPQEAQAIFNN-------LIEGGHKP-----SLVTYTTLLAALTIQKRFNSIHSIMSQV----- 133 (637)
Q Consensus 71 ~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~----- 133 (637)
++.+...++.++...++..+-++.... .-+.|..| .-++...|++.++-.||+..|+++++.+
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~ 153 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKK 153 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccc
Q ss_pred --HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006640 134 --EENGMDPDSIFFNAVINAFSESGNMEEAMDTFWKMK 169 (637)
Q Consensus 134 --~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 169 (637)
...-..-.+.++-.+.-+|.-.+++.+|.+.|..+.
T Consensus 154 ~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 154 GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 456
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=25.71 E-value=5.2e+02 Score=23.63 Aligned_cols=62 Identities=10% Similarity=-0.032 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCC-------HHHHHHHHHHHHHCCCC----CCHHHHH-HHHHHHHhcCChhHHHHHHHHHHHCC
Q 006640 427 TTIISGWCSDGS-------MDRAIEVFDKMCEHGVS----PNLKTFE-TLMWGYSEARQPWRAEEILQIMKAFG 488 (637)
Q Consensus 427 ~~li~~~~~~g~-------~~~A~~~~~~m~~~~~~----p~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~g 488 (637)
--+.+.|...|+ ...|++.|++..+..-. .+..+.. .+.....+.|+.++|.+.|.++...+
T Consensus 122 LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 122 LRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 334444555554 34466666666543211 1223333 33455667788888888888876543
No 457
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=25.64 E-value=56 Score=22.99 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=10.4
Q ss_pred ChHHHHHHHHHHHhcCCCCCC
Q 006640 192 KPEESVKLLDLMSREGNVKPN 212 (637)
Q Consensus 192 ~~~~A~~~~~~m~~~~~~~~~ 212 (637)
+++.|...|.++...+.+||+
T Consensus 40 d~~~Al~~F~~lk~~~~IP~e 60 (63)
T smart00804 40 DYERALKNFTELKSEGSIPPE 60 (63)
T ss_pred CHHHHHHHHHHHHhcCCCChh
Confidence 445555555555544444443
No 458
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=25.36 E-value=6.2e+02 Score=24.43 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=15.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHH
Q 006640 490 HPQKSTFLLLAEARRATGLTKEAKR 514 (637)
Q Consensus 490 ~p~~~~~~~l~~~~~~~g~~~eA~~ 514 (637)
.-|+..|..+..+|.-.|+.+.+.+
T Consensus 194 ~Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 194 DFDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred hCCHHHHHHHHHHHHHHhhhHHHHH
Confidence 3456677777777777776555443
No 459
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=25.35 E-value=6.7e+02 Score=24.76 Aligned_cols=115 Identities=14% Similarity=0.066 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh------cCChHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhcCCHH
Q 006640 158 MEEAMDTFWKMKESGLTPTTSTYNTLIKGYGI------AGKPEESVKLLDLMSREGNVKPNL-RTYNVLVRAWCNEKNIT 230 (637)
Q Consensus 158 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~------~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~li~~~~~~g~~~ 230 (637)
++++..++++....+. |-++.....|.++-. .-++.....+|+.+.... |+. ++.|--+ +..+..-.+
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~a---pSPvV~LNRAV-Ala~~~Gp~ 346 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAA---PSPVVTLNRAV-ALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhC---CCCeEeehHHH-HHHHhhhHH
Confidence 4555555655555443 455555555444322 124555555565555532 332 2333222 223333345
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006640 231 EAWNVMHKMAASGMKPDVV-TYNTIATAYAQNGEADQAEEVIVEMEHN 277 (637)
Q Consensus 231 ~A~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~ 277 (637)
.++.+.+-+...+--.+-+ .+..-...+.+.|..++|...|+.....
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 5555555555442111111 2223344556666666666666666553
No 460
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=25.21 E-value=3.5e+02 Score=21.53 Aligned_cols=8 Identities=13% Similarity=-0.076 Sum_probs=2.6
Q ss_pred HcCCHhHH
Q 006640 330 EIMDRDGV 337 (637)
Q Consensus 330 ~~~~~~~a 337 (637)
+.|++++|
T Consensus 52 NrG~Yq~A 59 (116)
T PF09477_consen 52 NRGDYQEA 59 (116)
T ss_dssp HTT-HHHH
T ss_pred hhHHHHHH
Confidence 33333333
No 461
>PRK09462 fur ferric uptake regulator; Provisional
Probab=24.72 E-value=4.3e+02 Score=22.33 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=37.8
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006640 449 MCEHGVSPNLKTFETLMWGYSEA-RQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLT 509 (637)
Q Consensus 449 m~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 509 (637)
+.+.|++++..-. .++..+... +..-.|.++++.+.+.+...+..|....++.+...|.+
T Consensus 8 l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 4455666554432 233334433 45667888888888777667777777777777777754
No 462
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=24.50 E-value=6.7e+02 Score=24.52 Aligned_cols=17 Identities=6% Similarity=0.212 Sum_probs=10.3
Q ss_pred HcCCHHHHHHHHHHHHH
Q 006640 400 REQEPEKAEELLMTMIE 416 (637)
Q Consensus 400 ~~g~~~~A~~~~~~~~~ 416 (637)
+.|+..+|.+.|+.+.+
T Consensus 287 klGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLMK 303 (556)
T ss_pred HhhhHHHHHHHHHHHhh
Confidence 55666666666666554
No 463
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=24.49 E-value=4.3e+02 Score=22.20 Aligned_cols=64 Identities=5% Similarity=0.018 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006640 423 VVIFTTIISGWCSDG---SMDRAIEVFDKMCEHG-VSPNLKTFETLMWGYSEARQPWRAEEILQIMKA 486 (637)
Q Consensus 423 ~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 486 (637)
..+--.+.+++.+.. +..+.+.++++..+.. ..-+....-.|.-++.+.|++++++++.+.+.+
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 333334444444433 3445555666665421 111222333344456666666666666665554
No 464
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=24.44 E-value=1.1e+03 Score=27.18 Aligned_cols=249 Identities=10% Similarity=0.026 Sum_probs=130.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006640 245 KPDVVTYNTIATAYAQNGEADQAEEVIVEMEHNGVQPNGRTCGIIISGYCKEGKIKEALRFARTMKEYGVHPNLVIFNLL 324 (637)
Q Consensus 245 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 324 (637)
.+|+.+-..-+..+.+.+..+ +...+..+.+ .++..+-...+.++.+.+........+..+.. .+|..+-...
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d~~VR~~A 704 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPDPVVRAAA 704 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCCHHHHHHH
Confidence 446666555666666655433 3344444443 23444444444444443221111223333332 2455555555
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006640 325 IKGFVEIMDRDGVDEVLALMKEFRVNPDVITYSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPDAHAYSILAKGYVREQEP 404 (637)
Q Consensus 325 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 404 (637)
+.++...+..+ ...+.. ..+ .+|...-...+.++.+.+..+. +..... .++..+-...+.++...+..
T Consensus 705 ~~aL~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 705 LDVLRALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccc
Confidence 55555443211 122222 222 3566555666666666554322 222222 45666666777777766654
Q ss_pred HH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006640 405 EK-AEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQI 483 (637)
Q Consensus 405 ~~-A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 483 (637)
+. +...+..+.+ .+|...-.+.+.++...|....+...+..+.+. ++..+=...+.++...+. .++...+..
T Consensus 773 ~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 773 GAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred cchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 43 3444555543 456777777888888888765554445555442 455555566677777665 355565555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 006640 484 MKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNK 522 (637)
Q Consensus 484 m~~~g~~p~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 522 (637)
+.+ .|+...-...+.++.+.+.-..+...+.++...
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D 881 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALTD 881 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhC
Confidence 542 566666667777777754344666666665543
No 465
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.21 E-value=9e+02 Score=26.27 Aligned_cols=92 Identities=13% Similarity=0.129 Sum_probs=61.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006640 356 YSTIMNAWSTAGFMDKCKEIFDDMGKAGIKPD------AHAYSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTI 429 (637)
Q Consensus 356 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 429 (637)
|+..-+. .+..++..+.+.|..-.+. ++.| ......|.-.|.+..+++.|.+++.+..+.. +.++.+--.+
T Consensus 358 Wn~A~~~-F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~~ 434 (872)
T KOG4814|consen 358 WNTAKKL-FKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLLM 434 (872)
T ss_pred HHhhHHH-HHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHHH
Confidence 4443333 3556677777777664432 1222 3345667777888889999999999988764 4456666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 006640 430 ISGWCSDGSMDRAIEVFDKMC 450 (637)
Q Consensus 430 i~~~~~~g~~~~A~~~~~~m~ 450 (637)
..+....|..++|+.......
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHH
Confidence 777778888888888776654
No 466
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=24.01 E-value=5.8e+02 Score=23.63 Aligned_cols=49 Identities=24% Similarity=0.407 Sum_probs=33.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006640 391 YSILAKGYVREQEPEKAEELLMTMIESGFHPNVVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVS 455 (637)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 455 (637)
|...+.+|...|. | ..|.+..+.|++ +...|+++.|+++.+.+++.|.+
T Consensus 67 Y~p~V~g~L~~g~--------------~-~qd~Vl~~~mvW-~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 67 YLPWVEGVLAAGA--------------G-YQDDVLMTVMVW-RFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred hHHHHHHHHHcCC--------------C-CCCCeeeEeeee-eeeccCHHHHHHHHHHHHHcCCC
Confidence 5555666665553 1 345444444444 66889999999999999998754
No 467
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=23.84 E-value=5.8e+02 Score=23.53 Aligned_cols=63 Identities=22% Similarity=0.265 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHH--HHHHHHHHcCCHHHHHHHHHHH
Q 006640 210 KPNLRTYNVLVRAWCNEKNITEAWNVMHKMAASGMKP---DVVTYN--TIATAYAQNGEADQAEEVIVEM 274 (637)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~---~~~~~~--~li~~~~~~g~~~~A~~~~~~~ 274 (637)
.++..-+|.|+--|.-...+.+|-..|..- .|+.| |..+++ .-|......|+.+.|.+....+
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHh
Confidence 344445555555555544455554444332 22222 222222 3445556667776666666555
No 468
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=23.64 E-value=3.3e+02 Score=20.69 Aligned_cols=64 Identities=20% Similarity=0.132 Sum_probs=30.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006640 443 IEVFDKMCEHGVSPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEA 512 (637)
Q Consensus 443 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~eA 512 (637)
.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. .| ...|...++++...|.-+-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 3455555555532 33333333322234456666666666554 22 22455566666666554443
No 469
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=23.35 E-value=2.5e+02 Score=22.36 Aligned_cols=46 Identities=22% Similarity=0.168 Sum_probs=29.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006640 464 LMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLT 509 (637)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 509 (637)
++..+...+..-.|.++++.+.+.+..++..|....++.+...|.+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 3444445555556777777777666666666666666677766643
No 470
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=23.34 E-value=2e+03 Score=29.59 Aligned_cols=22 Identities=23% Similarity=0.191 Sum_probs=14.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 006640 183 LIKGYGIAGKPEESVKLLDLMS 204 (637)
Q Consensus 183 li~~~~~~g~~~~A~~~~~~m~ 204 (637)
....|.+.|.+++|..+|++..
T Consensus 2488 ~a~s~eQ~G~~e~AQ~lyekaq 2509 (3550)
T KOG0889|consen 2488 VALSYEQLGFWEEAQSLYEKAQ 2509 (3550)
T ss_pred HHHHHHHhhhHHHHhhHHHHHH
Confidence 3445666777777777776654
No 471
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=23.14 E-value=2.7e+02 Score=19.46 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=10.4
Q ss_pred HHHcCChhHHHHHHHHHHh
Q 006640 82 LIERGKPQEAQAIFNNLIE 100 (637)
Q Consensus 82 ~~~~g~~~~A~~~~~~~~~ 100 (637)
+...|++-+|-++++.+-.
T Consensus 9 l~n~g~f~EaHEvlE~~W~ 27 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWK 27 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCC
T ss_pred HHcCCCHHHhHHHHHHHHH
Confidence 3445666666666666553
No 472
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=22.73 E-value=5.9e+02 Score=27.64 Aligned_cols=75 Identities=16% Similarity=0.172 Sum_probs=50.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 006640 112 TLLAALTIQKRFNSIHSIMSQVEENG--MDPDSIFFNAVINAFSESGNME------EAMDTFWKMKESGLTPTTSTYNTL 183 (637)
Q Consensus 112 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~~~~~~~~~~~~l 183 (637)
+++.+|...|++..+..+++.+...+ -..-...+|..|+...+.|.++ .|...++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78899999999999999988887643 1222456777788888888754 3444444443 33467777777
Q ss_pred HHHHHh
Q 006640 184 IKGYGI 189 (637)
Q Consensus 184 i~~~~~ 189 (637)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 765443
No 473
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=22.42 E-value=3.7e+02 Score=21.52 Aligned_cols=31 Identities=16% Similarity=0.067 Sum_probs=19.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006640 394 LAKGYVREQEPEKAEELLMTMIESGFHPNVVI 425 (637)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 425 (637)
+++.+.+|...++|+++++-|.+.| ..+...
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~ 97 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEE 97 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHH
Confidence 4455566777777777777777665 444433
No 474
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=22.36 E-value=7.3e+02 Score=24.13 Aligned_cols=21 Identities=14% Similarity=0.605 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHH
Q 006640 423 VVIFTTIISGWCSDGSMDRAI 443 (637)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~A~ 443 (637)
..+|..|+.+++..|+.+-.+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 345777778888887766554
No 475
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=22.14 E-value=2.5e+02 Score=22.60 Aligned_cols=47 Identities=19% Similarity=0.183 Sum_probs=33.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006640 463 TLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLT 509 (637)
Q Consensus 463 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 509 (637)
.++..+...+..-.|.++++.+.+.+...+..|.-.-++.+.+.|-+
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 45566666666778889999998888787877777777777777753
No 476
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=21.95 E-value=7.1e+02 Score=24.67 Aligned_cols=66 Identities=11% Similarity=0.090 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006640 439 MDRAIEVFDKMCEHGVSPNLK----TFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRAT 506 (637)
Q Consensus 439 ~~~A~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 506 (637)
.++.+.++..++.. -|+.. -|.+++......|.+++.+.+|+++...|-.|-.+.-..+++++...
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~~k 188 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILKMK 188 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Confidence 45777788887764 35643 57788888899999999999999999999999988888888887633
No 477
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.83 E-value=3.9e+02 Score=20.86 Aligned_cols=20 Identities=15% Similarity=0.320 Sum_probs=9.1
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 006640 429 IISGWCSDGSMDRAIEVFDK 448 (637)
Q Consensus 429 li~~~~~~g~~~~A~~~~~~ 448 (637)
|.-.|++.|+-+.|.+-|+.
T Consensus 78 LGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 78 LGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHhhcCChHHHHHHHHH
Confidence 33344444444444444443
No 478
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=21.60 E-value=2.3e+02 Score=20.56 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=20.0
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006640 84 ERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAAL 117 (637)
Q Consensus 84 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 117 (637)
-.|+.+.+.+++++....|..|.......+..+.
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m 46 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAM 46 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4567777777777777666655555444444443
No 479
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=21.58 E-value=1.9e+02 Score=17.15 Aligned_cols=12 Identities=25% Similarity=0.612 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 006640 440 DRAIEVFDKMCE 451 (637)
Q Consensus 440 ~~A~~~~~~m~~ 451 (637)
+.|..+|++...
T Consensus 4 dRAR~IyeR~v~ 15 (32)
T PF02184_consen 4 DRARSIYERFVL 15 (32)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 480
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=21.13 E-value=2.7e+02 Score=22.14 Aligned_cols=45 Identities=24% Similarity=0.267 Sum_probs=29.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006640 78 LMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTTLLAALTIQKR 122 (637)
Q Consensus 78 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 122 (637)
++..+...+.+-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 455556666666777777777776665666666666666666654
No 481
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.86 E-value=7.8e+02 Score=26.72 Aligned_cols=86 Identities=12% Similarity=0.086 Sum_probs=62.1
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006640 398 YVREQEPEKAEELLMTMIESGFHPN------VVIFTTIISGWCSDGSMDRAIEVFDKMCEHGVSPNLKTFETLMWGYSEA 471 (637)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 471 (637)
..+..++..+.+.|..-.+. ++.| ......|--+|....+.|.|.++++++.+.+.. ++.+-..+..+..+.
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~-~~l~q~~~~~~~~~E 441 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ-SPLCQLLMLQSFLAE 441 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHh
Confidence 34667788888888765442 1222 234566777888999999999999999886432 555666667788899
Q ss_pred CChhHHHHHHHHHH
Q 006640 472 RQPWRAEEILQIMK 485 (637)
Q Consensus 472 g~~~~A~~~~~~m~ 485 (637)
|.-++|+.......
T Consensus 442 ~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 442 DKSEEALTCLQKIK 455 (872)
T ss_pred cchHHHHHHHHHHH
Confidence 99999998876653
No 482
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.43 E-value=3.7e+02 Score=19.99 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=15.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC
Q 006640 394 LAKGYVREQEPEKAEELLMTMIESG 418 (637)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~~~~~ 418 (637)
+++.+.+|.--++|+++++-+.+.|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3445556666666666666666655
No 483
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=20.21 E-value=2.8e+02 Score=26.88 Aligned_cols=79 Identities=9% Similarity=0.036 Sum_probs=53.1
Q ss_pred cCcchhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 006640 68 SCRTVRSMTKLMNSLIERGKPQEAQAIFNNLIEGGHKPSLVTYTT-LLAALTIQKRFNSIHSIMSQVEENGMDPDSIFFN 146 (637)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (637)
...++..|...++...+.|.+.+.-.+|.+.... .+.|+..|-. --.-+...++++.++.+|...++.+ +.++..|.
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~k-hP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N-~~~p~iw~ 180 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTK-HPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN-SRSPRIWI 180 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCceeeeeeccchhhhhccHHHHHHHHHhhhccC-CCCchHHH
Confidence 4467778888877777788888888888888764 3446666644 2233455677888888888777765 44555554
Q ss_pred HH
Q 006640 147 AV 148 (637)
Q Consensus 147 ~l 148 (637)
..
T Consensus 181 ey 182 (435)
T COG5191 181 EY 182 (435)
T ss_pred HH
Confidence 43
No 484
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=20.17 E-value=4.7e+02 Score=21.10 Aligned_cols=62 Identities=21% Similarity=0.159 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006640 455 SPNLKTFETLMWGYSEARQPWRAEEILQIMKAFGV------------------HPQKSTFLLLAEARRATGLTKEAKRIL 516 (637)
Q Consensus 455 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~------------------~p~~~~~~~l~~~~~~~g~~~eA~~~~ 516 (637)
.|...+..-|...+.-+.+ .+..++++|.+.|. .+-.+.+...+..+...|++++|.+++
T Consensus 16 ~~~~vtl~elA~~l~cS~R--n~r~lLkkm~~~gWi~W~pg~GRG~~S~L~~l~~~~~~~~~~~~~~l~~g~~~~a~~ll 93 (115)
T PF12793_consen 16 QPVEVTLDELAELLFCSRR--NARTLLKKMQEEGWITWQPGRGRGNRSQLTFLKSPEELLEQQAEELLEQGKYEQALQLL 93 (115)
T ss_pred CCcceeHHHHHHHhCCCHH--HHHHHHHHHHHCCCeeeeCCCCCCCCCeeEEeeCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3455566666555443322 46677777776542 122456777778888999999999998
Q ss_pred HH
Q 006640 517 SK 518 (637)
Q Consensus 517 ~~ 518 (637)
..
T Consensus 94 ~~ 95 (115)
T PF12793_consen 94 DF 95 (115)
T ss_pred Hh
Confidence 74
No 485
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=20.10 E-value=6.1e+02 Score=22.90 Aligned_cols=26 Identities=12% Similarity=0.211 Sum_probs=13.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006640 145 FNAVINAFSESGNMEEAMDTFWKMKE 170 (637)
Q Consensus 145 ~~~li~~~~~~g~~~~A~~~~~~m~~ 170 (637)
.+.++..+...|+++.|.++|.-+..
T Consensus 44 L~~lLh~~llr~d~~rA~Raf~lLiR 69 (199)
T PF04090_consen 44 LTDLLHLCLLRGDWDRAYRAFGLLIR 69 (199)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 44445555555555555555555544
Done!