Your job contains 1 sequence.
>006641
MEATGAAAATAAVTSATTAAVPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVC
RDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFI
KNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGML
INDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMK
DSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQER
ISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMP
EEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRAPGGMSPLASGIPGYHH
GAPRLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGPNYIMPYHLQRQVHPGQRT
GVRRSGNTHQMQQPQFMRNSNQGIRYLDNARNGTDQSVVSMVPVPFEVSGMPATPVETPR
PVPVPISTLTSALASASPDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLI
ESPEALKTKVAEAMAVLQEAAARSDVNEKLGSLAVNE
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 006641
(637 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 1776 4.7e-183 1
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 1656 2.4e-170 1
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 1637 2.5e-168 1
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 1570 3.1e-161 1
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 1122 2.3e-129 2
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 1122 3.8e-129 2
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 1122 3.8e-129 2
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 1121 4.8e-129 2
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 1121 4.8e-129 2
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 1121 4.8e-129 2
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 1116 1.6e-128 2
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 1116 1.6e-128 2
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 1109 3.4e-128 2
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 1115 8.9e-128 2
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 1115 8.9e-128 2
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 1113 8.9e-128 2
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 1113 8.9e-128 2
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 1113 8.9e-128 2
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 1113 8.9e-128 2
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 1113 8.9e-128 2
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 1109 2.4e-127 2
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 1247 5.3e-127 1
UNIPROTKB|P20965 - symbol:pabpc1-a "Polyadenylate-binding... 1103 1.0e-126 2
UNIPROTKB|Q6IP09 - symbol:pabpc1-b "Polyadenylate-binding... 1092 1.5e-125 2
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric... 924 9.3e-125 3
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 1214 1.7e-123 1
UNIPROTKB|E2RND1 - symbol:PABPC1L "Uncharacterized protei... 1060 4.5e-123 3
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei... 1085 3.5e-122 2
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 906 4.0e-122 3
ZFIN|ZDB-GENE-030131-5836 - symbol:pabpc1l "poly(A) bindi... 1201 4.0e-122 1
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 1193 2.8e-121 1
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei... 1192 3.6e-121 1
WB|WBGene00003903 - symbol:pab-2 species:6239 "Caenorhabd... 1095 5.1e-121 2
UNIPROTKB|Q4VXU2 - symbol:PABPC1L "Polyadenylate-binding ... 1185 2.0e-120 1
UNIPROTKB|Q9H361 - symbol:PABPC3 "Polyadenylate-binding p... 1052 2.2e-120 2
WB|WBGene00003902 - symbol:pab-1 species:6239 "Caenorhabd... 1081 7.5e-120 2
UNIPROTKB|Q98SP8 - symbol:epabp-a "Embryonic polyadenylat... 1175 2.3e-119 1
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat... 1171 6.0e-119 1
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 1170 7.7e-119 1
POMBASE|SPAC57A7.04c - symbol:pabp "mRNA export shuttling... 1083 2.2e-118 2
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 1066 2.9e-118 2
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 1013 3.1e-118 3
RGD|1310759 - symbol:Pabpc2 "poly(A) binding protein, cyt... 1028 2.6e-117 2
UNIPROTKB|E7EQV3 - symbol:PABPC1 "Polyadenylate-binding p... 1007 1.4e-116 2
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ... 1069 4.7e-116 2
UNIPROTKB|E7ERJ7 - symbol:PABPC1 "Polyadenylate-binding p... 707 4.0e-112 3
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 959 1.6e-111 2
GENEDB_PFALCIPARUM|PFL1170w - symbol:PFL1170w "polyadenyl... 679 3.5e-111 3
UNIPROTKB|Q8I5H4 - symbol:PFL1170w "Polyadenylate-binding... 679 3.5e-111 3
UNIPROTKB|E2R9I1 - symbol:PABPC4 "Uncharacterized protein... 950 5.5e-111 2
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 944 3.0e-110 2
UNIPROTKB|D4AC21 - symbol:Pabpc4 "Protein Pabpc4" species... 938 1.0e-109 2
DICTYBASE|DDB_G0293558 - symbol:pabpc1A "polyadenylate bi... 1005 4.4e-109 2
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 1011 6.4e-108 2
TAIR|locus:2040625 - symbol:PAB7 "poly(A) binding protein... 875 3.2e-100 2
UNIPROTKB|H0Y5F5 - symbol:PABPC4 "Polyadenylate-binding p... 839 2.9e-99 2
TAIR|locus:2009036 - symbol:PAB1 "poly(A) binding protein... 941 1.4e-94 1
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 916 6.3e-92 1
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 911 2.1e-91 1
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 911 2.1e-91 1
UNIPROTKB|Q4VY17 - symbol:PABPC1L "EPAB" species:9606 "Ho... 881 3.2e-88 1
UNIPROTKB|Q96DU9 - symbol:PABPC5 "Polyadenylate-binding p... 871 3.7e-87 1
UNIPROTKB|F1N4Q4 - symbol:PABPC5 "Uncharacterized protein... 867 9.9e-87 1
UNIPROTKB|F1PQV8 - symbol:PABPC5 "Uncharacterized protein... 866 1.3e-86 1
RGD|1559517 - symbol:Pabpc4l "poly(A) binding protein, cy... 861 4.3e-86 1
RGD|2322083 - symbol:LOC100360473 "poly A binding protein... 852 3.8e-85 1
TAIR|locus:2094922 - symbol:PAB6 "poly(A) binding protein... 823 4.5e-82 1
UNIPROTKB|F1NH82 - symbol:F1NH82 "Uncharacterized protein... 575 2.6e-71 2
DICTYBASE|DDB_G0290745 - symbol:pabpc1B "putative polyade... 652 4.2e-67 2
UNIPROTKB|H0YAR2 - symbol:PABPC1 "Polyadenylate-binding p... 668 1.2e-65 1
UNIPROTKB|H3BPI5 - symbol:PABPC3 "Polyadenylate-binding p... 668 1.2e-65 1
RGD|1305015 - symbol:Pabpc4 "poly(A) binding protein, cyt... 424 1.6e-55 2
UNIPROTKB|H0YBQ4 - symbol:PABPC1 "Polyadenylate-binding p... 562 2.1e-54 1
UNIPROTKB|Q5JQF8 - symbol:PABPC1L2A "Polyadenylate-bindin... 520 5.8e-50 1
RGD|1566367 - symbol:Pabpc1l2a "poly(A) binding protein, ... 518 9.5e-50 1
UNIPROTKB|G3MZ94 - symbol:PABPC1L2A "Uncharacterized prot... 518 9.5e-50 1
UNIPROTKB|F1RPL9 - symbol:LOC100623240 "Uncharacterized p... 518 9.5e-50 1
UNIPROTKB|G3MYW4 - symbol:PABPC1L2A "Uncharacterized prot... 516 1.5e-49 1
UNIPROTKB|Q5JQF3 - symbol:PABPC5 "Polyadenylate-binding p... 489 1.1e-46 1
FB|FBgn0035016 - symbol:CG4612 species:7227 "Drosophila m... 444 6.6e-42 1
UNIPROTKB|F1M0P4 - symbol:F1M0P4 "Uncharacterized protein... 302 1.7e-39 2
UNIPROTKB|B1ANR1 - symbol:PABPC4 "Polyadenylate-binding p... 412 1.6e-38 1
UNIPROTKB|H0YCC8 - symbol:PABPC4 "Polyadenylate-binding p... 389 7.0e-38 2
UNIPROTKB|E5RJB9 - symbol:PABPC1 "Polyadenylate-binding p... 406 7.0e-38 1
SGD|S000001919 - symbol:PES4 "Poly(A) binding protein, su... 307 9.7e-36 2
UNIPROTKB|H0YBN4 - symbol:PABPC1 "Polyadenylate-binding p... 274 2.4e-35 2
UNIPROTKB|H0YEQ8 - symbol:PABPC4 "Polyadenylate-binding p... 384 2.7e-35 1
UNIPROTKB|E5RGH3 - symbol:PABPC1 "Polyadenylate-binding p... 378 1.3e-34 1
UNIPROTKB|E5RH24 - symbol:PABPC1 "Polyadenylate-binding p... 358 2.4e-32 1
UNIPROTKB|H0YEU6 - symbol:PABPC4 "Polyadenylate-binding p... 350 1.9e-31 1
TAIR|locus:2046298 - symbol:emb2444 "embryo defective 244... 288 2.8e-30 2
UNIPROTKB|F1N9I5 - symbol:ELAVL1 "Uncharacterized protein... 242 8.7e-29 2
MGI|MGI:1100851 - symbol:Elavl1 "ELAV (embryonic lethal, ... 240 1.4e-28 2
RGD|1308649 - symbol:Elavl1 "ELAV (embryonic lethal, abno... 240 1.4e-28 2
UNIPROTKB|Q15717 - symbol:ELAVL1 "ELAV-like protein 1" sp... 240 1.4e-28 2
UNIPROTKB|Q3ZCE2 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 240 1.4e-28 2
UNIPROTKB|H0YAP2 - symbol:PABPC1 "Polyadenylate-binding p... 320 4.0e-28 1
ZFIN|ZDB-GENE-990415-245 - symbol:elavl1 "ELAV (embryonic... 247 9.7e-28 2
UNIPROTKB|D3K5N7 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 239 1.5e-27 2
UNIPROTKB|Q5U259 - symbol:elavl1-b "ELAV-like protein 1-B... 238 4.3e-27 2
WARNING: Descriptions of 1289 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 1776 (630.2 bits), Expect = 4.7e-183, P = 4.7e-183
Identities = 360/596 (60%), Positives = 440/596 (73%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
N SLY GDL+ V E+ L+DLF VA VVSVRVCRDQ++RS LGYAY+N+SNP DA A
Sbjct: 48 NSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRS-LGYAYINFSNPNDAYRAM 106
Query: 87 EALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCK 146
EALN+ P+ +PIRIM S+RDPS R SG GN+FIKNLD SIDNKAL +TF++FGT+LSCK
Sbjct: 107 EALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCK 166
Query: 147 VAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQ-QNV-SP 204
VA+D G+SKGYGFVQFE EE+AQ AI LNGML+NDKQV+VG F+RRQERA+ +N +P
Sbjct: 167 VAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTP 226
Query: 205 KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAV 264
+FTNVYV NL + + +++L+K FG FG I+SA+VM+D G SRCFGFVNF+ +AAA+AV
Sbjct: 227 RFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAV 286
Query: 265 EKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDE 324
EK+NG + D V YVGRAQK++ERE +LR KFEQERI+R+EK +GANLYLKNLDDS++DE
Sbjct: 287 EKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDE 346
Query: 325 KLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384
KLKE+FSE+G +TS KVM++ G S+G GF A+S PEEA RAL+EMNGKMIGRKPLY+A+
Sbjct: 347 KLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIAL 406
Query: 385 AQRKEERKARLQAQFAQIRAPGGMSPLASGIPGYHH--GAPRLGP-QQLYYGQGTPGLMP 441
AQRKE+R+A LQA F+QIRAPG MS G+HH G P GP Q +Y GQ ++P
Sbjct: 407 AQRKEDRRAHLQALFSQIRAPGPMS-------GFHHPPGGPMPGPPQHMYVGQNGASMVP 459
Query: 442 PQAAGYGFQQQVFPGLRPG-GP-NYIMPYHLQRQVHPGQRTGVRRSG-NTHQ-MQQPQFM 497
Q GYGFQ Q PG+RPG GP N+I+PY LQRQ G R G RR N Q +QQ Q M
Sbjct: 460 SQPIGYGFQPQFMPGMRPGSGPGNFIVPYPLQRQPQTGPRMGFRRGATNVQQHIQQQQLM 519
Query: 498 -RNSNQGIRYLD---NARNGTDQSVVSMVPVPFEVSGMXXXXXXXXXXXXXXIXXXXXXX 553
RN + G+RY++ N RNG D SV + P + I
Sbjct: 520 HRNPSPGMRYMNGASNGRNGMDSSVPQGILPPIIPLPIDASSISHQKAPLLPISKLTSSL 579
Query: 554 XXXXPDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTK 609
P DRTRMLGEQLYPLVE EP+H +KVTGMLLEMDQ E+LHL+ESPEALK+K
Sbjct: 580 ASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSK 635
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 1656 (588.0 bits), Expect = 2.4e-170, P = 2.4e-170
Identities = 337/592 (56%), Positives = 425/592 (71%)
Query: 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAAN 84
+GN SLYVGDL+ NV +SQL+D F Q+ VV+VRVCRD R SLGY YVN++NPQDAA
Sbjct: 33 FGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAAR 92
Query: 85 AKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS 144
A + LN++P+ GKPIR+MYSHRDPS+R+SG GN+FIKNLD SID+KAL DTF++FG ++S
Sbjct: 93 AIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVS 152
Query: 145 CKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSP 204
CKVA+DS+GQSKGYGFVQ+ NEE+AQ AI+ LNGML+NDKQVYVG F+RRQER
Sbjct: 153 CKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKT 212
Query: 205 KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAV 264
KFTNVYV NLAE+ TD+DLK FG +G ITSA+VMKD +GKS+ FGFVNF++ D AA AV
Sbjct: 213 KFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAV 272
Query: 265 EKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDE 324
E LNG +DK WYVGRAQK++ERE +LR ++EQ +K + +NLY+KNLD SI+DE
Sbjct: 273 ESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDE 332
Query: 325 KLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384
KLKE+FS FGT+TS KVM D +G SKGSGF AF+ PEEAT A+++++GKMI KPLYVA+
Sbjct: 333 KLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAI 392
Query: 385 AQRKEERKARLQAQFAQIRAPGGMSP-LASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQ 443
AQRKE+R+ RLQAQF+Q+R P M P + +P Y G P +G QQ++YGQ P ++PPQ
Sbjct: 393 AQRKEDRRVRLQAQFSQVR-PVAMQPSVGPRMPVYPPGGPGIG-QQMFYGQAPPAMIPPQ 450
Query: 444 AAGYGFQQQVFPGLRPGG---PNYIMPYHLQRQVHPG--QRTG-VRRSGNTHQMQQPQFM 497
GYG+QQQ+ PG+RPGG P++ MP +Q PG +R G ++ S + M Q Q M
Sbjct: 451 P-GYGYQQQLVPGMRPGGGPVPSFFMPMVQPQQQRPGGGRRPGGIQHSQQQNPMMQQQ-M 508
Query: 498 RNSNQGIRYLDNARNGTDQSVVSMVPVPFEVSGMXXXXXXXXXXXXXXIXXXXXXXXXXX 557
+ RY R G+ VP P+++ I
Sbjct: 509 HPRGRMFRY-PQGRGGSGD-----VP-PYDMGN----------NMPLTIGALASNLSNAT 551
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTK 609
P+ + MLGE LYPLVE +E A+KVTGMLLEMDQTEVLHL+ESPEALK K
Sbjct: 552 PEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAK 603
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 1637 (581.3 bits), Expect = 2.5e-168, P = 2.5e-168
Identities = 335/599 (55%), Positives = 418/599 (69%)
Query: 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANA 85
G SLYVGDL+ V +SQL++ F+Q QVVSVRVCRD + R SLGY YVNY+ PQDA+ A
Sbjct: 43 GTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRA 102
Query: 86 KEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSC 145
LNFM +NG+ IR+MYS RDPS+RKSG GN+FIKNLD SID+KAL +TF+AFG +LSC
Sbjct: 103 LNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSC 162
Query: 146 KVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPK 205
KVA+D +GQSKGYGFVQ++ +EAAQ AI LNGML+NDKQVYVG FV + +R K
Sbjct: 163 KVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVK 222
Query: 206 FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVE 265
FTNVYV NL+E+++DE+L K+FG FG TS ++M+D +GKS+ FGFVNF++ D AA AV+
Sbjct: 223 FTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVD 282
Query: 266 KLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEK 325
LNG T +DK W+VG+AQK++ERE +L+ KFEQ +K +G+NLY+KNLD+S+ D+K
Sbjct: 283 ALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDK 342
Query: 326 LKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385
L+E F+ FGTITSCKVM D G S+GSGF AFS PEEATRA+ EMNGKMI KPLYVA+A
Sbjct: 343 LREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALA 402
Query: 386 QRKEERKARLQAQFAQIRAPGGMSP-LASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQA 444
QRKE+RKARLQAQF+Q+R P M P + + Y G P +G QQL+YGQG P ++P
Sbjct: 403 QRKEDRKARLQAQFSQMR-PVNMPPAVGPRMQMYPPGGPPMG-QQLFYGQGPPAMIPQP- 459
Query: 445 AGYGFQQQVFPGLRPGG---PNYIMPY-----HLQRQVHPGQRTGVRRSGNTHQMQQP-- 494
G+G+QQQ+ PG+RPGG PN+ MP Q+Q QR G R G Q QQP
Sbjct: 460 -GFGYQQQLVPGMRPGGSPMPNFFMPMMQQGQQQQQQQQQQQRPGGGRRGALPQPQQPSP 518
Query: 495 ---QFMRNSNQGIRYLDNARNGTDQSVVSMVPVPFEVS-GMXXXXXXXXXXXXXXIXXXX 550
Q M + RY N +M+ VP++VS G I
Sbjct: 519 MMQQQMHPRGRMYRYPQRDVNTMPGPTQNMLSVPYDVSSGGGVHHRDSPTSQPVPIVALA 578
Query: 551 XXXXXXXPDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTK 609
P+ + MLGE LYPLVE +EP A+KVTGMLLEMDQTEVLHL+ESPEALK K
Sbjct: 579 TRLANAAPEQQRTMLGENLYPLVEQLEPESAAKVTGMLLEMDQTEVLHLLESPEALKAK 637
Score = 435 (158.2 bits), Expect = 1.4e-40, P = 1.4e-40
Identities = 99/291 (34%), Positives = 160/291 (54%)
Query: 112 KSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQ 170
+ G ++++ +LD ++ + L + F G V+S +V D + +S GYG+V + + A
Sbjct: 41 QQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDAS 100
Query: 171 NAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHF 230
A+ LN M +N + + V VR + V N+++ NL +++ + L + F F
Sbjct: 101 RALNELNFMALNGRAIRVMYSVRDPSLRKSGVG----NIFIKNLDKSIDHKALHETFSAF 156
Query: 231 GTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREA 290
G I S V D G+S+ +GFV + + +AA A++KLNG NDK YVG + +R+
Sbjct: 157 GPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDP 216
Query: 291 DLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSK 350
EK+K N+Y+KNL +S++DE+L ++F EFG TSC +M D G SK
Sbjct: 217 S------------GEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSK 264
Query: 351 GSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQ 401
G GF F ++A RA++ +NGK K +V AQ+K ER+ L+ +F Q
Sbjct: 265 GFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQ 315
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 1570 (557.7 bits), Expect = 3.1e-161, P = 3.1e-161
Identities = 323/593 (54%), Positives = 412/593 (69%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
SLYVGDL+ NV +SQLYD F++V QVVSVRVCRD + +SLGY YVNYSN DA A +
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN+ +NGK IRI YS RD S R+SG GN+F+KNLD S+DNK L + F+ GT++SCKVA
Sbjct: 107 LNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVA 166
Query: 149 IDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTN 208
D GQS+GYGFVQF+ E++A+NAI+ LNG ++NDKQ++VG F+R++ER KFTN
Sbjct: 167 TDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTN 226
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLN 268
VYV NL+E TD++LK FG +G+I+SA+VM+D DGKSRCFGFVNF++P+ AA AVE LN
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 269 GTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKE 328
G +DK WYVG+AQK++ERE +L ++EQ K G NLY+KNLDD++ DEKL+E
Sbjct: 287 GKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRE 346
Query: 329 LFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRK 388
LF+EFGTITSCKVM D G SKGSGF AFS EA+R LNEMNGKM+G KPLYVA+AQRK
Sbjct: 347 LFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRK 406
Query: 389 EERKARLQAQFAQIRAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYG 448
EER+A+LQAQF+Q+R P + + +P + GAP LG QQ++YGQG P ++P Q G+G
Sbjct: 407 EERRAKLQAQFSQMR-PAFIPGVGPRMPIFTGGAPGLG-QQIFYGQGPPPIIPHQP-GFG 463
Query: 449 FQQQVFPGLRP---GGPNYIMPYHLQRQVHPGQRTGVRRSGN---THQMQQPQ-FMRNS- 500
+Q Q+ PG+RP GGP + + G R G RRSG+ HQ QQP +M+
Sbjct: 464 YQPQLVPGMRPAFFGGP-------MMQPGQQGPRPGGRRSGDGPMRHQHQQPMPYMQPQM 516
Query: 501 ---NQGIRYLDNARNGTDQSVVS-MVPVPFEVSGMXXXXXXXXXXXXXXIXXXXXXXXXX 556
+G RY RN D + MVPV ++++ M +
Sbjct: 517 MPRGRGYRYPSGGRNMPDGPMPGGMVPVAYDMNVMPYSQPMSAGQLATSLANAT------ 570
Query: 557 XPDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTK 609
P + +LGE LYPLV+ IE HA+KVTGMLLEMDQTEVLHL+ESPEAL K
Sbjct: 571 -PAQQRTLLGESLYPLVDQIESEHAAKVTGMLLEMDQTEVLHLLESPEALNAK 622
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 1122 (400.0 bits), Expect = 2.3e-129, Sum P(2) = 2.3e-129
Identities = 241/457 (52%), Positives = 308/457 (67%)
Query: 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQD 81
PS Y SLYVGDL Q+V E+ LY+ FS ++S+RVCRD R SLGYAYVN+ P D
Sbjct: 6 PS-YPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 82 AANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGT 141
A A + +NF I G+P+RIM+S RDPS+RKSG GN+FIKNLD SIDNKAL DTF+AFG
Sbjct: 65 AERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 142 VLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQ 200
+LSCKV D NG SKGYGFV FE +EAA+ AI+ +NGML+ND++V+VG F R+ER A+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 201 NVSPK-FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDA 259
K FTNVY+ N E + D+ LK IF +G S VM D +GKSR FGFV+F+ +
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHED 243
Query: 260 AAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDD 319
A AV+++NG N K+ YVGRAQK+ ER+ +L+ KFEQ + R + +G NLY+KNLDD
Sbjct: 244 AQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDD 303
Query: 320 SINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKP 379
I+DE+L++ FS FGTITS KVM+D G SKG GF FS PEEAT+A+ EMNG+++ KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMDG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 380 LYVAVAQRKEERKARLQAQFAQ----IRA-PGGM-SPLASGIP-GYHHGA-PRLGPQQLY 431
LYVA+AQRKEER+A L Q+ Q +RA P + +P P GY A P+ + Y
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQAQNRAAY 422
Query: 432 YGQGTPG-LMP-PQAAGYGFQQQVF---PG-LRPGGP 462
Y L P P+ G + Q F PG +RP P
Sbjct: 423 YPTSQLAQLRPSPRWTTQGVRPQHFQNMPGTMRPSAP 459
Score = 436 (158.5 bits), Expect = 8.6e-57, Sum P(2) = 8.6e-57
Identities = 99/298 (33%), Positives = 171/298 (57%)
Query: 107 DPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFEN 165
+PS ++++ +L + L + F+ G +LS +V D +S GY +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 166 EEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKK 225
A+ A+ +N +I + V + R + V N+++ NL +++ ++ L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVG----NIFIKNLDKSIDNKALYD 117
Query: 226 IFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKR 285
F FG I S V+ D +G S+ +GFV+F++ +AA A+EK+NG ND+ +VGR + R
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 286 AEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ 345
EREA+L A+ ++ N+Y+KN + ++D+KLK++FS++G S +VM D+
Sbjct: 177 KEREAELGARAKEF----------TNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDE 226
Query: 346 HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
+G S+G GF +F E+A RA++EMNGK + K +YV AQ+K ER+ L+ +F Q++
Sbjct: 227 NGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMK 284
Score = 168 (64.2 bits), Expect = 2.3e-129, Sum P(2) = 2.3e-129
Identities = 28/52 (53%), Positives = 45/52 (86%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTK 609
P ++ +MLGE+L+PL++N+ P A K+TGMLLE+D +E+LH++ESPE+L++K
Sbjct: 553 PQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPESLRSK 604
Score = 49 (22.3 bits), Expect = 2.8e-44, Sum P(2) = 2.8e-44
Identities = 28/139 (20%), Positives = 52/139 (37%)
Query: 404 APGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGPN 463
A +P G+P Y + PQQ Q + P G Q+ + + P
Sbjct: 495 AAAASAPPVRGVPQYKYAPSVRNPQQHMNTQPQVTMQQPAVHVQG-QEPLTASMLAAAPP 553
Query: 464 YIMP-------YHLQRQVHP---GQRTG----VRRSGNTHQMQQPQFMRNS-NQGIRYLD 508
+ L + +HP G+ TG + S H ++ P+ +R+ ++ + L
Sbjct: 554 QEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 613
Query: 509 --NARNGTDQSVVSMVPVP 525
A+ ++V + VP
Sbjct: 614 AHQAKEAAQKTVTNSTGVP 632
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 1122 (400.0 bits), Expect = 3.8e-129, Sum P(2) = 3.8e-129
Identities = 245/458 (53%), Positives = 307/458 (67%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
S Y SLYVGDL +V E+ LY+ FS V+S+RVCRD R SLGYAYVN+ P DA
Sbjct: 6 SSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 83 ANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTV 142
A + +NF I GKPIRIM+S RDPS+RKSG GNVFIKNLD SIDNKAL DTF+AFG +
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 143 LSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQN 201
LSCKV D NG SKGY FV FE +EAA AI+ +NGML+ND++V+VG F R+ER A+
Sbjct: 126 LSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 202 VSPK-FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAA 260
K FTNVY+ N E V DE+LK++F FG S VM+D GKS+ FGFV+++ + A
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
Query: 261 AAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQ---ERISRYEKLKGANLYLKNL 317
AVE++NG + KV +VGRAQK+ ER+A+L+ KFEQ ERISRY+ G NLY+KNL
Sbjct: 245 NKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ---GVNLYIKNL 301
Query: 318 DDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGR 377
DD+I+DEKL++ FS FG+ITS KVM++ G SKG GF FS PEEAT+A+ EMNG+++G
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 378 KPLYVAVAQRKEERKARLQAQFAQ----IRA-PGG--MSPLASGIPGYHHGA-PRLGPQQ 429
KPLYVA+AQRKEERKA L Q+ Q +RA P ++ GY A P+ +
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP 420
Query: 430 LYYGQGTPGLMPPQAAGY-GFQQQVFPGL----RPGGP 462
YY M P G + Q F G+ R GP
Sbjct: 421 PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGP 458
Score = 166 (63.5 bits), Expect = 3.8e-129, Sum P(2) = 3.8e-129
Identities = 29/77 (37%), Positives = 52/77 (67%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTKXXXXXXXX 617
P ++ +MLGE+L+PL++ + A K+TGMLLE+D +E+LH++ESPE+L++K
Sbjct: 551 PQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 610
Query: 618 XXXXXRSDVNEKLGSLA 634
+ + +K+G++A
Sbjct: 611 QAHHAKKEAAQKVGAVA 627
Score = 37 (18.1 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 16/61 (26%), Positives = 22/61 (36%)
Query: 404 APGGMSPLASGIP--GYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYGFQQQV---FPGLR 458
AP G +P + G+P G P Q L P A Y + V P ++
Sbjct: 466 APTGNAPASRGLPTTAQRVGVPT-AVQNLAPRAAVATAAPRAVAPYKYASSVRSPHPAIQ 524
Query: 459 P 459
P
Sbjct: 525 P 525
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 1122 (400.0 bits), Expect = 3.8e-129, Sum P(2) = 3.8e-129
Identities = 248/476 (52%), Positives = 313/476 (65%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
S Y SLYVGDL +V E+ LY+ FS V+S+RVCRD R SLGYAYVN+ P DA
Sbjct: 6 SSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 83 ANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTV 142
A + +NF I GKPIRIM+S RDPS+RKSG GNVFIKNLD SIDNKAL DTF+AFG +
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 143 LSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQN 201
LSCKV D NG SKGY FV FE +EAA AI+ +NGML+ND++V+VG F R+ER A+
Sbjct: 126 LSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 202 VSPK-FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAA 260
K FTNVY+ N E V DE LK++F FG S VM+D +GKS+ FGFV+++ + A
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDA 244
Query: 261 AAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQ---ERISRYEKLKGANLYLKNL 317
AVE++NG + K+ +VGRAQK+ ER+A+L+ KFEQ ERISRY+ G NLY+KNL
Sbjct: 245 NKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ---GVNLYIKNL 301
Query: 318 DDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGR 377
DD+I+DEKL++ FS FG+ITS KVM++ G SKG GF FS PEEAT+A+ EMNG+++G
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 378 KPLYVAVAQRKEERKARLQAQFAQ----IRA-PGG--MSPLASGIPGYHHGA-PRLGPQQ 429
KPLYVA+AQRKEERKA L Q+ Q +RA P ++ GY A P+ +
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP 420
Query: 430 LYYGQGTPGLMPPQAAGY-GFQQQVFPGLRPGGPNYIMPYHLQRQVHP-GQRTGVR 483
YY M P G + Q F G+ P P R + P G T V+
Sbjct: 421 PYYTPNQLAQMRPNPRWQQGGRPQGFQGM-PSAIRQSGPRPTLRHLAPTGVPTAVQ 475
Score = 166 (63.5 bits), Expect = 3.8e-129, Sum P(2) = 3.8e-129
Identities = 29/77 (37%), Positives = 52/77 (67%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTKXXXXXXXX 617
P ++ +MLGE+L+PL++ + A K+TGMLLE+D +E+LH++ESPE+L++K
Sbjct: 535 PQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 594
Query: 618 XXXXXRSDVNEKLGSLA 634
+ + +K+G++A
Sbjct: 595 QAHHAKKEAAQKVGAVA 611
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 1121 (399.7 bits), Expect = 4.8e-129, Sum P(2) = 4.8e-129
Identities = 245/458 (53%), Positives = 306/458 (66%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
S Y SLYVGDL +V E+ LY+ FS V+S+RVCRD R SLGYAYVN+ P DA
Sbjct: 6 SSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 83 ANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTV 142
A + +NF I GKPIRIM+S RDPS+RKSG GNVFIKNLD SIDNKAL DTF+AFG +
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 143 LSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQN 201
LSCKV D NG SKGY FV FE +EAA AI+ +NGML+ND++V+VG F R+ER A+
Sbjct: 126 LSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 202 VSPK-FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAA 260
K FTNVY+ N E V DE LK++F FG S VM+D GKS+ FGFV+++ + A
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
Query: 261 AAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQ---ERISRYEKLKGANLYLKNL 317
AVE++NG + KV +VGRAQK+ ER+A+L+ KFEQ ERISRY+ G NLY+KNL
Sbjct: 245 NKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ---GVNLYIKNL 301
Query: 318 DDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGR 377
DD+I+DEKL++ FS FG+ITS KVM++ G SKG GF FS PEEAT+A+ EMNG+++G
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 378 KPLYVAVAQRKEERKARLQAQFAQ----IRA-PGG--MSPLASGIPGYHHGA-PRLGPQQ 429
KPLYVA+AQRKEERKA L Q+ Q +RA P ++ GY A P+ +
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP 420
Query: 430 LYYGQGTPGLMPPQAAGY-GFQQQVFPGL----RPGGP 462
YY M P G + Q F G+ R GP
Sbjct: 421 PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGP 458
Score = 166 (63.5 bits), Expect = 4.8e-129, Sum P(2) = 4.8e-129
Identities = 29/77 (37%), Positives = 52/77 (67%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTKXXXXXXXX 617
P ++ +MLGE+L+PL++ + A K+TGMLLE+D +E+LH++ESPE+L++K
Sbjct: 551 PQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 610
Query: 618 XXXXXRSDVNEKLGSLA 634
+ + +K+G++A
Sbjct: 611 QAHHAKKEAAQKVGAVA 627
Score = 38 (18.4 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 16/61 (26%), Positives = 22/61 (36%)
Query: 404 APGGMSPLASGIP--GYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYGFQQQV---FPGLR 458
AP G +P + G+P G P Q L P A Y + V P ++
Sbjct: 466 APTGNAPASRGLPTTAQRVGVPT-AVQTLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQ 524
Query: 459 P 459
P
Sbjct: 525 P 525
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 1121 (399.7 bits), Expect = 4.8e-129, Sum P(2) = 4.8e-129
Identities = 245/458 (53%), Positives = 306/458 (66%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
S Y SLYVGDL +V E+ LY+ FS V+S+RVCRD R SLGYAYVN+ P DA
Sbjct: 6 SSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 83 ANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTV 142
A + +NF I GKPIRIM+S RDPS+RKSG GNVFIKNLD SIDNKAL DTF+AFG +
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 143 LSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQN 201
LSCKV D NG SKGY FV FE +EAA AI+ +NGML+ND++V+VG F R+ER A+
Sbjct: 126 LSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 202 VSPK-FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAA 260
K FTNVY+ N E V DE+LK++F FG S VM+D GKS+ FGFV+++ + A
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDA 244
Query: 261 AAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQ---ERISRYEKLKGANLYLKNL 317
AVE++NG KV +VGRAQK+ ER+A+L+ KFEQ ERISRY+ G NLY+KNL
Sbjct: 245 NKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ---GVNLYIKNL 301
Query: 318 DDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGR 377
DD+I+DEKL++ FS FG+ITS KVM++ G SKG GF FS PEEAT+A+ EMNG+++G
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 378 KPLYVAVAQRKEERKARLQAQFAQ----IRA-PGG--MSPLASGIPGYHHGA-PRLGPQQ 429
KPLYVA+AQRKEERKA L Q+ Q +RA P ++ GY A P+ +
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP 420
Query: 430 LYYGQGTPGLMPPQAAGY-GFQQQVFPGL----RPGGP 462
YY M P G + Q F G+ R GP
Sbjct: 421 PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGP 458
Score = 166 (63.5 bits), Expect = 4.8e-129, Sum P(2) = 4.8e-129
Identities = 29/77 (37%), Positives = 52/77 (67%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTKXXXXXXXX 617
P ++ +MLGE+L+PL++ + A K+TGMLLE+D +E+LH++ESPE+L++K
Sbjct: 565 PQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 624
Query: 618 XXXXXRSDVNEKLGSLA 634
+ + +K+G++A
Sbjct: 625 QAHHAKKEAAQKVGAVA 641
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 1121 (399.7 bits), Expect = 4.8e-129, Sum P(2) = 4.8e-129
Identities = 244/458 (53%), Positives = 307/458 (67%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
S Y SLYVGDL +V E+ LY+ FS V+S+RVCRD R SLGYAYVN+ P DA
Sbjct: 6 SSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 83 ANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTV 142
A + +NF I GKPIRIM+S RDPS+RKSG GNVFIKNLD SIDNKAL DTF+AFG +
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 143 LSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQN 201
LSCKV D NG SKGY FV FE +EAA AI+ +NGML+ND++V+VG F R+ER A+
Sbjct: 126 LSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 202 VSPK-FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAA 260
K FTNVY+ N E V DE LK++F FG S VM+D +GKS+ FGFV+++ + A
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDA 244
Query: 261 AAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQ---ERISRYEKLKGANLYLKNL 317
AVE++NG + K+ +VGRAQK+ ER+A+L+ KFEQ ERISRY+ G NLY+KNL
Sbjct: 245 NKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ---GVNLYIKNL 301
Query: 318 DDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGR 377
DD+I+DEKL++ FS FG+ITS KVM++ G SKG GF FS PEEAT+A+ EMNG+++G
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 378 KPLYVAVAQRKEERKARLQAQFAQ----IRA-PGG--MSPLASGIPGYHHGA-PRLGPQQ 429
KPLYVA+AQRKEERKA L Q+ Q +RA P ++ GY A P+ +
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP 420
Query: 430 LYYGQGTPGLMPPQAAGY-GFQQQVFPGL----RPGGP 462
YY M P G + Q F G+ R GP
Sbjct: 421 PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGP 458
Score = 166 (63.5 bits), Expect = 4.8e-129, Sum P(2) = 4.8e-129
Identities = 29/77 (37%), Positives = 52/77 (67%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTKXXXXXXXX 617
P ++ +MLGE+L+PL++ + A K+TGMLLE+D +E+LH++ESPE+L++K
Sbjct: 564 PQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 623
Query: 618 XXXXXRSDVNEKLGSLA 634
+ + +K+G++A
Sbjct: 624 QAHHAKKEAAQKVGAVA 640
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 1116 (397.9 bits), Expect = 1.6e-128, Sum P(2) = 1.6e-128
Identities = 244/458 (53%), Positives = 306/458 (66%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
S Y SLYVGDL +V E+ LY+ FS V+S+RVCRD R SLGYAYVN+ P DA
Sbjct: 6 SSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 83 ANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTV 142
A + +NF I GKPIRIM+S RDPS+RKSG GNVFIKNLD SIDNKAL DTF+AFG +
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 143 LSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQN 201
LSCKV D NG SKGY FV FE +EAA AI+ +NGML+ND++V+VG F R+ER A+
Sbjct: 126 LSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 202 VSPK-FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAA 260
K FTNVY+ N E V DE+L+++F FG S VM+D GKS+ FGFV+++ + A
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDA 244
Query: 261 AAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQ---ERISRYEKLKGANLYLKNL 317
AVE++NG + K +VGRAQK+ ER+A+L+ KFEQ ERISRY+ G NLY+KNL
Sbjct: 245 NKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQ---GVNLYIKNL 301
Query: 318 DDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGR 377
DD+I+DEKL++ FS FG+ITS KVM++ G SKG GF FS PEEAT+A+ EMNG+++G
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 378 KPLYVAVAQRKEERKARLQAQFAQ----IRA-PGG--MSPLASGIPGYHHGA-PRLGPQQ 429
KPLYVA+AQRKEERKA L Q+ Q +RA P ++ GY A P+ +
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP 420
Query: 430 LYYGQGTPGLMPPQAAGY-GFQQQVFPG----LRPGGP 462
YY M P G + Q F G LR GP
Sbjct: 421 PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSALRQSGP 458
Score = 166 (63.5 bits), Expect = 1.6e-128, Sum P(2) = 1.6e-128
Identities = 29/77 (37%), Positives = 52/77 (67%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTKXXXXXXXX 617
P ++ +MLGE+L+PL++ + A K+TGMLLE+D +E+LH++ESPE+L++K
Sbjct: 551 PQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 610
Query: 618 XXXXXRSDVNEKLGSLA 634
+ + +K+G++A
Sbjct: 611 QAHHAKKEAAQKVGTVA 627
Score = 39 (18.8 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 17/62 (27%), Positives = 25/62 (40%)
Query: 404 APGGMSPLASGIP--GYHHGAPRLGPQQLYYGQGTPGLMPPQA-AGYGFQQQV---FPGL 457
AP G +P + G+P G P P + T P+A A Y + V P +
Sbjct: 466 APTGNAPASRGLPTTAQRVGVPTAVPNLA--PRATVAAAAPRAVAPYKYASNVRSPHPAI 523
Query: 458 RP 459
+P
Sbjct: 524 QP 525
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 1116 (397.9 bits), Expect = 1.6e-128, Sum P(2) = 1.6e-128
Identities = 244/458 (53%), Positives = 306/458 (66%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
S Y SLYVGDL +V E+ LY+ FS V+S+RVCRD R SLGYAYVN+ P DA
Sbjct: 6 SSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 83 ANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTV 142
A + +NF I GKPIRIM+S RDPS+RKSG GNVFIKNLD SIDNKAL DTF+AFG +
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 143 LSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQN 201
LSCKV D NG SKGY FV FE +EAA AI+ +NGML+ND++V+VG F R+ER A+
Sbjct: 126 LSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 202 VSPK-FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAA 260
K FTNVY+ N E V DE+L+++F FG S VM+D GKS+ FGFV+++ + A
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDA 244
Query: 261 AAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQ---ERISRYEKLKGANLYLKNL 317
AVE++NG + K +VGRAQK+ ER+A+L+ KFEQ ERISRY+ G NLY+KNL
Sbjct: 245 NKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQ---GVNLYIKNL 301
Query: 318 DDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGR 377
DD+I+DEKL++ FS FG+ITS KVM++ G SKG GF FS PEEAT+A+ EMNG+++G
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 378 KPLYVAVAQRKEERKARLQAQFAQ----IRA-PGG--MSPLASGIPGYHHGA-PRLGPQQ 429
KPLYVA+AQRKEERKA L Q+ Q +RA P ++ GY A P+ +
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP 420
Query: 430 LYYGQGTPGLMPPQAAGY-GFQQQVFPG----LRPGGP 462
YY M P G + Q F G LR GP
Sbjct: 421 PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSALRQSGP 458
Score = 166 (63.5 bits), Expect = 1.6e-128, Sum P(2) = 1.6e-128
Identities = 29/77 (37%), Positives = 52/77 (67%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTKXXXXXXXX 617
P ++ +MLGE+L+PL++ + A K+TGMLLE+D +E+LH++ESPE+L++K
Sbjct: 580 PQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 639
Query: 618 XXXXXRSDVNEKLGSLA 634
+ + +K+G++A
Sbjct: 640 QAHHAKKEAAQKVGTVA 656
Score = 37 (18.1 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 27/90 (30%), Positives = 35/90 (38%)
Query: 404 APGGMSPLASGIPGYHHGAPRLG---PQQL---YYGQGTP--GLMPPQAAGYGFQQQVFP 455
AP G +P + G+P A R+G P +L + G G GL +G G V P
Sbjct: 466 APTGNAPASRGLPTT---AQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSG-GVPTAV-P 520
Query: 456 GLRP------GGPNYIMPYHLQRQV---HP 476
L P P + PY V HP
Sbjct: 521 NLAPRATVAAAAPRAVAPYKYASNVRSPHP 550
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 1109 (395.4 bits), Expect = 3.4e-128, Sum P(2) = 3.4e-128
Identities = 241/458 (52%), Positives = 305/458 (66%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
S Y SLYVGDL +V E+ LY+ FS V+S+RVCRD R SLGYAYVN+ P DA
Sbjct: 6 SSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 83 ANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTV 142
A + +NF I GKPIRIM+S RDPS+RKSG GNVFIKNLD SIDNKAL DTF+AFG +
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 143 LSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQN 201
LSCKV D NG SKGY FV FE ++AA AI+ +NGML+ND++V+VG F R+ER A+
Sbjct: 126 LSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 202 VSPK-FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAA 260
K FTNVY+ N + + DE LK++F +G S VM D GKS+ FGFV+F+ + A
Sbjct: 185 AKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDA 244
Query: 261 AAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQ---ERISRYEKLKGANLYLKNL 317
AVE++NG N K+ +VGRAQK+ ER+A+L+ +FEQ ERISRY+ G NLY+KNL
Sbjct: 245 NKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQ---GVNLYIKNL 301
Query: 318 DDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGR 377
DD+I+DEKL++ FS FG+ITS KVM++ G SKG GF FS PEEAT+A+ EMNG+++G
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 378 KPLYVAVAQRKEERKARLQAQFAQ----IRA-PGG--MSPLASGIPGYHHGA-PRLGPQQ 429
KPLYVA+AQRKEERKA L Q+ Q +RA P ++ GY A P+ +
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQRIAGMRALPANTIINQFQPAAGGYFMPAVPQAQSRP 420
Query: 430 LYYGQGTPGLMPPQAAGY-GFQQQVFPGL----RPGGP 462
YY M P G + Q F G+ R GP
Sbjct: 421 TYYAPNQMAQMRPNPRWQQGGRPQGFQGMPNAMRQSGP 458
Score = 170 (64.9 bits), Expect = 3.4e-128, Sum P(2) = 3.4e-128
Identities = 30/77 (38%), Positives = 52/77 (67%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTKXXXXXXXX 617
P ++ +MLGE+L+PL++ + P A K+TGMLLE+D +E+LH++ESPE+L++K
Sbjct: 551 PQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVEEAVAVL 610
Query: 618 XXXXXRSDVNEKLGSLA 634
+ + +K+G +A
Sbjct: 611 QAHQAKKEAAQKVGVVA 627
Score = 38 (18.4 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 404 APGGMSPLASGIP 416
AP G +P + G+P
Sbjct: 466 APAGTAPASRGLP 478
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 1115 (397.6 bits), Expect = 8.9e-128, Sum P(2) = 8.9e-128
Identities = 240/457 (52%), Positives = 306/457 (66%)
Query: 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQD 81
PS Y SLYVGDL +V E+ LY+ FS ++S+RVCRD R SLGYAYVN+ P D
Sbjct: 6 PS-YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 82 AANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGT 141
A A + +NF I GKP+RIM+S RDPS+RKSG GN+FIKNLD SIDNKAL DTF+AFG
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 142 VLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQ 200
+LSCKV D NG SKGYGFV FE +EAA+ AI+ +NGML+ND++V+VG F R+ER A+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 201 NVSPK-FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDA 259
K FTNVY+ N E + DE LK++FG FG S VM D GKS+ FGFV+F+ +
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 260 AAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDD 319
A AV+++NG N K YVGRAQK+ ER+ +L+ KFEQ + R + +G NLY+KNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 320 SINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKP 379
I+DE+L++ FS FGTITS KVM++ G SKG GF FS PEEAT+A+ EMNG+++ KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 380 LYVAVAQRKEERKARLQAQFAQ----IRA-PGGM-SPLASGIP-GYHHGA-PRLGPQQLY 431
LYVA+AQRKEER+A L Q+ Q +RA P + +P P GY A P+ + Y
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAY 422
Query: 432 YGQGTPG-LMP-PQAAGYGFQQQVF---PG-LRPGGP 462
Y L P P+ G + F PG +RP P
Sbjct: 423 YPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAP 459
Score = 445 (161.7 bits), Expect = 4.2e-57, Sum P(2) = 4.2e-57
Identities = 103/298 (34%), Positives = 169/298 (56%)
Query: 107 DPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFEN 165
+PS ++++ +L + L + F+ G +LS +V D +S GY +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 166 EEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKK 225
A+ A+ +N +I K V + R + V N+++ NL +++ ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG----NIFIKNLDKSIDNKALYD 117
Query: 226 IFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKR 285
F FG I S V+ D +G S+ +GFV+F++ +AA A+EK+NG ND+ +VGR + R
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 286 AEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ 345
EREA+L A+ ++ N+Y+KN + ++DE+LKELF +FG S KVM D+
Sbjct: 177 KEREAELGARAKEF----------TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 346 HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
G SKG GF +F E+A +A++EMNGK + K +YV AQ+K ER+ L+ +F Q++
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 160 (61.4 bits), Expect = 8.9e-128, Sum P(2) = 8.9e-128
Identities = 27/52 (51%), Positives = 44/52 (84%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTK 609
P ++ +MLGE+L+PL++ + P A K+TGMLLE+D +E+LH++ESPE+L++K
Sbjct: 555 PQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSK 606
Score = 48 (22.0 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
Identities = 29/139 (20%), Positives = 52/139 (37%)
Query: 404 APGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGPN 463
A +P +P Y + A PQQ Q + P G Q+ + + P
Sbjct: 497 AAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQG-QEPLTASMLASAPP 555
Query: 464 YIMP-------YHLQRQVHP---GQRTG----VRRSGNTHQMQQPQFMRNS-NQGIRYLD 508
+ L + +HP G+ TG + S H ++ P+ +R+ ++ + L
Sbjct: 556 QEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 615
Query: 509 --NARNGTDQSVVSMVPVP 525
A+ ++V S VP
Sbjct: 616 AHQAKEAAQKAVNSATGVP 634
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 1115 (397.6 bits), Expect = 8.9e-128, Sum P(2) = 8.9e-128
Identities = 240/457 (52%), Positives = 306/457 (66%)
Query: 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQD 81
PS Y SLYVGDL +V E+ LY+ FS ++S+RVCRD R SLGYAYVN+ P D
Sbjct: 6 PS-YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 82 AANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGT 141
A A + +NF I GKP+RIM+S RDPS+RKSG GN+FIKNLD SIDNKAL DTF+AFG
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 142 VLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQ 200
+LSCKV D NG SKGYGFV FE +EAA+ AI+ +NGML+ND++V+VG F R+ER A+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 201 NVSPK-FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDA 259
K FTNVY+ N E + DE LK++FG FG S VM D GKS+ FGFV+F+ +
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 260 AAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDD 319
A AV+++NG N K YVGRAQK+ ER+ +L+ KFEQ + R + +G NLY+KNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 320 SINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKP 379
I+DE+L++ FS FGTITS KVM++ G SKG GF FS PEEAT+A+ EMNG+++ KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 380 LYVAVAQRKEERKARLQAQFAQ----IRA-PGGM-SPLASGIP-GYHHGA-PRLGPQQLY 431
LYVA+AQRKEER+A L Q+ Q +RA P + +P P GY A P+ + Y
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAY 422
Query: 432 YGQGTPG-LMP-PQAAGYGFQQQVF---PG-LRPGGP 462
Y L P P+ G + F PG +RP P
Sbjct: 423 YPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAP 459
Score = 445 (161.7 bits), Expect = 4.2e-57, Sum P(2) = 4.2e-57
Identities = 103/298 (34%), Positives = 169/298 (56%)
Query: 107 DPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFEN 165
+PS ++++ +L + L + F+ G +LS +V D +S GY +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 166 EEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKK 225
A+ A+ +N +I K V + R + V N+++ NL +++ ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG----NIFIKNLDKSIDNKALYD 117
Query: 226 IFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKR 285
F FG I S V+ D +G S+ +GFV+F++ +AA A+EK+NG ND+ +VGR + R
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 286 AEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ 345
EREA+L A+ ++ N+Y+KN + ++DE+LKELF +FG S KVM D+
Sbjct: 177 KEREAELGARAKEF----------TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 346 HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
G SKG GF +F E+A +A++EMNGK + K +YV AQ+K ER+ L+ +F Q++
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 160 (61.4 bits), Expect = 8.9e-128, Sum P(2) = 8.9e-128
Identities = 27/52 (51%), Positives = 44/52 (84%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTK 609
P ++ +MLGE+L+PL++ + P A K+TGMLLE+D +E+LH++ESPE+L++K
Sbjct: 555 PQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSK 606
Score = 46 (21.3 bits), Expect = 9.8e-116, Sum P(2) = 9.8e-116
Identities = 28/134 (20%), Positives = 51/134 (38%)
Query: 409 SPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGPNYIMP- 467
+P +P Y + A PQQ Q + P G Q+ + + P
Sbjct: 502 TPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQG-QEPLTASMLASAPPQEQKQ 560
Query: 468 ------YHLQRQVHP---GQRTG----VRRSGNTHQMQQPQFMRNS-NQGIRYLD--NAR 511
+ L + +HP G+ TG + S H ++ P+ +R+ ++ + L A+
Sbjct: 561 MLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAK 620
Query: 512 NGTDQSVVSMVPVP 525
++V S VP
Sbjct: 621 EAAQKAVNSATGVP 634
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 1113 (396.9 bits), Expect = 8.9e-128, Sum P(2) = 8.9e-128
Identities = 240/457 (52%), Positives = 305/457 (66%)
Query: 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQD 81
PS Y SLYVGDL +V E+ LY+ FS ++S+RVCRD R SLGYAYVN+ P D
Sbjct: 6 PS-YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 82 AANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGT 141
A A + +NF I GKP+RIM+S RDPS+RKSG GN+FIKNLD SIDNKAL DTF+AFG
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 142 VLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQ 200
+LSCKV D NG SKGYGFV FE +EAA+ AI+ +NGML+ND++V+VG F R+ER A+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 201 NVSPK-FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDA 259
K FTNVY+ N E + DE LK +FG FG S VM D GKS+ FGFV+F+ +
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 260 AAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDD 319
A AV+++NG N K YVGRAQK+ ER+ +L+ KFEQ + R + +G NLY+KNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 320 SINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKP 379
I+DE+L++ FS FGTITS KVM++ G SKG GF FS PEEAT+A+ EMNG+++ KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 380 LYVAVAQRKEERKARLQAQFAQ----IRA-PGGM-SPLASGIP-GYHHGA-PRLGPQQLY 431
LYVA+AQRKEER+A L Q+ Q +RA P + +P P GY A P+ + Y
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAY 422
Query: 432 YGQGTPG-LMP-PQAAGYGFQQQVF---PG-LRPGGP 462
Y L P P+ G + F PG +RP P
Sbjct: 423 YPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAP 459
Score = 442 (160.7 bits), Expect = 6.3e-57, Sum P(2) = 6.3e-57
Identities = 102/298 (34%), Positives = 169/298 (56%)
Query: 107 DPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFEN 165
+PS ++++ +L + L + F+ G +LS +V D +S GY +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 166 EEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKK 225
A+ A+ +N +I K V + R + V N+++ NL +++ ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG----NIFIKNLDKSIDNKALYD 117
Query: 226 IFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKR 285
F FG I S V+ D +G S+ +GFV+F++ +AA A+EK+NG ND+ +VGR + R
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 286 AEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ 345
EREA+L A+ ++ N+Y+KN + ++DE+LK+LF +FG S KVM D+
Sbjct: 177 KEREAELGARAKEF----------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 346 HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
G SKG GF +F E+A +A++EMNGK + K +YV AQ+K ER+ L+ +F Q++
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 162 (62.1 bits), Expect = 8.9e-128, Sum P(2) = 8.9e-128
Identities = 27/52 (51%), Positives = 44/52 (84%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTK 609
P ++ +MLGE+L+PL++ + P A K+TGMLLE+D +E+LH++ESPE+L++K
Sbjct: 555 PQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSK 606
Score = 48 (22.0 bits), Expect = 6.1e-45, Sum P(2) = 6.1e-45
Identities = 29/139 (20%), Positives = 52/139 (37%)
Query: 404 APGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGPN 463
A +P +P Y + A PQQ Q + P G Q+ + + P
Sbjct: 497 AAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQG-QEPLTASMLASAPP 555
Query: 464 YIMP-------YHLQRQVHP---GQRTG----VRRSGNTHQMQQPQFMRNS-NQGIRYLD 508
+ L + +HP G+ TG + S H ++ P+ +R+ ++ + L
Sbjct: 556 QEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 615
Query: 509 --NARNGTDQSVVSMVPVP 525
A+ ++V S VP
Sbjct: 616 AHQAKEAAQKAVNSATGVP 634
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 1113 (396.9 bits), Expect = 8.9e-128, Sum P(2) = 8.9e-128
Identities = 240/457 (52%), Positives = 305/457 (66%)
Query: 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQD 81
PS Y SLYVGDL +V E+ LY+ FS ++S+RVCRD R SLGYAYVN+ P D
Sbjct: 6 PS-YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 82 AANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGT 141
A A + +NF I GKP+RIM+S RDPS+RKSG GN+FIKNLD SIDNKAL DTF+AFG
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 142 VLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQ 200
+LSCKV D NG SKGYGFV FE +EAA+ AI+ +NGML+ND++V+VG F R+ER A+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 201 NVSPK-FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDA 259
K FTNVY+ N E + DE LK +FG FG S VM D GKS+ FGFV+F+ +
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 260 AAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDD 319
A AV+++NG N K YVGRAQK+ ER+ +L+ KFEQ + R + +G NLY+KNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 320 SINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKP 379
I+DE+L++ FS FGTITS KVM++ G SKG GF FS PEEAT+A+ EMNG+++ KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 380 LYVAVAQRKEERKARLQAQFAQ----IRA-PGGM-SPLASGIP-GYHHGA-PRLGPQQLY 431
LYVA+AQRKEER+A L Q+ Q +RA P + +P P GY A P+ + Y
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAY 422
Query: 432 YGQGTPG-LMP-PQAAGYGFQQQVF---PG-LRPGGP 462
Y L P P+ G + F PG +RP P
Sbjct: 423 YPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAP 459
Score = 442 (160.7 bits), Expect = 6.3e-57, Sum P(2) = 6.3e-57
Identities = 102/298 (34%), Positives = 169/298 (56%)
Query: 107 DPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFEN 165
+PS ++++ +L + L + F+ G +LS +V D +S GY +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 166 EEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKK 225
A+ A+ +N +I K V + R + V N+++ NL +++ ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG----NIFIKNLDKSIDNKALYD 117
Query: 226 IFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKR 285
F FG I S V+ D +G S+ +GFV+F++ +AA A+EK+NG ND+ +VGR + R
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 286 AEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ 345
EREA+L A+ ++ N+Y+KN + ++DE+LK+LF +FG S KVM D+
Sbjct: 177 KEREAELGARAKEF----------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 346 HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
G SKG GF +F E+A +A++EMNGK + K +YV AQ+K ER+ L+ +F Q++
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 162 (62.1 bits), Expect = 8.9e-128, Sum P(2) = 8.9e-128
Identities = 27/52 (51%), Positives = 44/52 (84%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTK 609
P ++ +MLGE+L+PL++ + P A K+TGMLLE+D +E+LH++ESPE+L++K
Sbjct: 555 PQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSK 606
Score = 48 (22.0 bits), Expect = 6.1e-45, Sum P(2) = 6.1e-45
Identities = 29/139 (20%), Positives = 52/139 (37%)
Query: 404 APGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGPN 463
A +P +P Y + A PQQ Q + P G Q+ + + P
Sbjct: 497 AAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQG-QEPLTASMLASAPP 555
Query: 464 YIMP-------YHLQRQVHP---GQRTG----VRRSGNTHQMQQPQFMRNS-NQGIRYLD 508
+ L + +HP G+ TG + S H ++ P+ +R+ ++ + L
Sbjct: 556 QEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 615
Query: 509 --NARNGTDQSVVSMVPVP 525
A+ ++V S VP
Sbjct: 616 AHQAKEAAQKAVNSATGVP 634
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 1113 (396.9 bits), Expect = 8.9e-128, Sum P(2) = 8.9e-128
Identities = 240/457 (52%), Positives = 305/457 (66%)
Query: 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQD 81
PS Y SLYVGDL +V E+ LY+ FS ++S+RVCRD R SLGYAYVN+ P D
Sbjct: 6 PS-YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 82 AANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGT 141
A A + +NF I GKP+RIM+S RDPS+RKSG GN+FIKNLD SIDNKAL DTF+AFG
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 142 VLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQ 200
+LSCKV D NG SKGYGFV FE +EAA+ AI+ +NGML+ND++V+VG F R+ER A+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 201 NVSPK-FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDA 259
K FTNVY+ N E + DE LK +FG FG S VM D GKS+ FGFV+F+ +
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 260 AAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDD 319
A AV+++NG N K YVGRAQK+ ER+ +L+ KFEQ + R + +G NLY+KNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 320 SINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKP 379
I+DE+L++ FS FGTITS KVM++ G SKG GF FS PEEAT+A+ EMNG+++ KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 380 LYVAVAQRKEERKARLQAQFAQ----IRA-PGGM-SPLASGIP-GYHHGA-PRLGPQQLY 431
LYVA+AQRKEER+A L Q+ Q +RA P + +P P GY A P+ + Y
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAY 422
Query: 432 YGQGTPG-LMP-PQAAGYGFQQQVF---PG-LRPGGP 462
Y L P P+ G + F PG +RP P
Sbjct: 423 YPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAP 459
Score = 442 (160.7 bits), Expect = 6.3e-57, Sum P(2) = 6.3e-57
Identities = 102/298 (34%), Positives = 169/298 (56%)
Query: 107 DPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFEN 165
+PS ++++ +L + L + F+ G +LS +V D +S GY +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 166 EEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKK 225
A+ A+ +N +I K V + R + V N+++ NL +++ ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG----NIFIKNLDKSIDNKALYD 117
Query: 226 IFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKR 285
F FG I S V+ D +G S+ +GFV+F++ +AA A+EK+NG ND+ +VGR + R
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 286 AEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ 345
EREA+L A+ ++ N+Y+KN + ++DE+LK+LF +FG S KVM D+
Sbjct: 177 KEREAELGARAKEF----------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 346 HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
G SKG GF +F E+A +A++EMNGK + K +YV AQ+K ER+ L+ +F Q++
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 162 (62.1 bits), Expect = 8.9e-128, Sum P(2) = 8.9e-128
Identities = 27/52 (51%), Positives = 44/52 (84%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTK 609
P ++ +MLGE+L+PL++ + P A K+TGMLLE+D +E+LH++ESPE+L++K
Sbjct: 555 PQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSK 606
Score = 48 (22.0 bits), Expect = 6.1e-45, Sum P(2) = 6.1e-45
Identities = 29/139 (20%), Positives = 52/139 (37%)
Query: 404 APGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGPN 463
A +P +P Y + A PQQ Q + P G Q+ + + P
Sbjct: 497 AAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQG-QEPLTASMLASAPP 555
Query: 464 YIMP-------YHLQRQVHP---GQRTG----VRRSGNTHQMQQPQFMRNS-NQGIRYLD 508
+ L + +HP G+ TG + S H ++ P+ +R+ ++ + L
Sbjct: 556 QEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 615
Query: 509 --NARNGTDQSVVSMVPVP 525
A+ ++V S VP
Sbjct: 616 AHQAKEAAQKAVNSATGVP 634
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 1113 (396.9 bits), Expect = 8.9e-128, Sum P(2) = 8.9e-128
Identities = 240/457 (52%), Positives = 305/457 (66%)
Query: 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQD 81
PS Y SLYVGDL +V E+ LY+ FS ++S+RVCRD R SLGYAYVN+ P D
Sbjct: 6 PS-YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 82 AANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGT 141
A A + +NF I GKP+RIM+S RDPS+RKSG GN+FIKNLD SIDNKAL DTF+AFG
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 142 VLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQ 200
+LSCKV D NG SKGYGFV FE +EAA+ AI+ +NGML+ND++V+VG F R+ER A+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 201 NVSPK-FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDA 259
K FTNVY+ N E + DE LK +FG FG S VM D GKS+ FGFV+F+ +
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 260 AAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDD 319
A AV+++NG N K YVGRAQK+ ER+ +L+ KFEQ + R + +G NLY+KNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 320 SINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKP 379
I+DE+L++ FS FGTITS KVM++ G SKG GF FS PEEAT+A+ EMNG+++ KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 380 LYVAVAQRKEERKARLQAQFAQ----IRA-PGGM-SPLASGIP-GYHHGA-PRLGPQQLY 431
LYVA+AQRKEER+A L Q+ Q +RA P + +P P GY A P+ + Y
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAY 422
Query: 432 YGQGTPG-LMP-PQAAGYGFQQQVF---PG-LRPGGP 462
Y L P P+ G + F PG +RP P
Sbjct: 423 YPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAP 459
Score = 442 (160.7 bits), Expect = 6.3e-57, Sum P(2) = 6.3e-57
Identities = 102/298 (34%), Positives = 169/298 (56%)
Query: 107 DPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFEN 165
+PS ++++ +L + L + F+ G +LS +V D +S GY +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 166 EEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKK 225
A+ A+ +N +I K V + R + V N+++ NL +++ ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG----NIFIKNLDKSIDNKALYD 117
Query: 226 IFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKR 285
F FG I S V+ D +G S+ +GFV+F++ +AA A+EK+NG ND+ +VGR + R
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 286 AEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ 345
EREA+L A+ ++ N+Y+KN + ++DE+LK+LF +FG S KVM D+
Sbjct: 177 KEREAELGARAKEF----------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 346 HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
G SKG GF +F E+A +A++EMNGK + K +YV AQ+K ER+ L+ +F Q++
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 162 (62.1 bits), Expect = 8.9e-128, Sum P(2) = 8.9e-128
Identities = 27/52 (51%), Positives = 44/52 (84%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTK 609
P ++ +MLGE+L+PL++ + P A K+TGMLLE+D +E+LH++ESPE+L++K
Sbjct: 555 PQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSK 606
Score = 48 (22.0 bits), Expect = 6.1e-45, Sum P(2) = 6.1e-45
Identities = 29/139 (20%), Positives = 52/139 (37%)
Query: 404 APGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGPN 463
A +P +P Y + A PQQ Q + P G Q+ + + P
Sbjct: 497 AAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQG-QEPLTASMLASAPP 555
Query: 464 YIMP-------YHLQRQVHP---GQRTG----VRRSGNTHQMQQPQFMRNS-NQGIRYLD 508
+ L + +HP G+ TG + S H ++ P+ +R+ ++ + L
Sbjct: 556 QEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 615
Query: 509 --NARNGTDQSVVSMVPVP 525
A+ ++V S VP
Sbjct: 616 AHQAKEAAQKAVNSATGVP 634
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 1113 (396.9 bits), Expect = 8.9e-128, Sum P(2) = 8.9e-128
Identities = 240/457 (52%), Positives = 305/457 (66%)
Query: 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQD 81
PS Y SLYVGDL +V E+ LY+ FS ++S+RVCRD R SLGYAYVN+ P D
Sbjct: 6 PS-YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 82 AANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGT 141
A A + +NF I GKP+RIM+S RDPS+RKSG GN+FIKNLD SIDNKAL DTF+AFG
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 142 VLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQ 200
+LSCKV D NG SKGYGFV FE +EAA+ AI+ +NGML+ND++V+VG F R+ER A+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 201 NVSPK-FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDA 259
K FTNVY+ N E + DE LK +FG FG S VM D GKS+ FGFV+F+ +
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 260 AAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDD 319
A AV+++NG N K YVGRAQK+ ER+ +L+ KFEQ + R + +G NLY+KNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 320 SINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKP 379
I+DE+L++ FS FGTITS KVM++ G SKG GF FS PEEAT+A+ EMNG+++ KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 380 LYVAVAQRKEERKARLQAQFAQ----IRA-PGGM-SPLASGIP-GYHHGA-PRLGPQQLY 431
LYVA+AQRKEER+A L Q+ Q +RA P + +P P GY A P+ + Y
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAY 422
Query: 432 YGQGTPG-LMP-PQAAGYGFQQQVF---PG-LRPGGP 462
Y L P P+ G + F PG +RP P
Sbjct: 423 YPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAP 459
Score = 442 (160.7 bits), Expect = 1.1e-56, Sum P(2) = 1.1e-56
Identities = 102/298 (34%), Positives = 169/298 (56%)
Query: 107 DPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFEN 165
+PS ++++ +L + L + F+ G +LS +V D +S GY +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 166 EEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKK 225
A+ A+ +N +I K V + R + V N+++ NL +++ ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG----NIFIKNLDKSIDNKALYD 117
Query: 226 IFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKR 285
F FG I S V+ D +G S+ +GFV+F++ +AA A+EK+NG ND+ +VGR + R
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 286 AEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ 345
EREA+L A+ ++ N+Y+KN + ++DE+LK+LF +FG S KVM D+
Sbjct: 177 KEREAELGARAKEF----------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 346 HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
G SKG GF +F E+A +A++EMNGK + K +YV AQ+K ER+ L+ +F Q++
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 162 (62.1 bits), Expect = 8.9e-128, Sum P(2) = 8.9e-128
Identities = 27/52 (51%), Positives = 44/52 (84%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTK 609
P ++ +MLGE+L+PL++ + P A K+TGMLLE+D +E+LH++ESPE+L++K
Sbjct: 566 PQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSK 617
Score = 48 (22.0 bits), Expect = 1.0e-44, Sum P(2) = 1.0e-44
Identities = 29/139 (20%), Positives = 52/139 (37%)
Query: 404 APGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGPN 463
A +P +P Y + A PQQ Q + P G Q+ + + P
Sbjct: 508 AAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQG-QEPLTASMLASAPP 566
Query: 464 YIMP-------YHLQRQVHP---GQRTG----VRRSGNTHQMQQPQFMRNS-NQGIRYLD 508
+ L + +HP G+ TG + S H ++ P+ +R+ ++ + L
Sbjct: 567 QEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 626
Query: 509 --NARNGTDQSVVSMVPVP 525
A+ ++V S VP
Sbjct: 627 AHQAKEAAQKAVNSATGVP 645
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 1109 (395.4 bits), Expect = 2.4e-127, Sum P(2) = 2.4e-127
Identities = 239/457 (52%), Positives = 304/457 (66%)
Query: 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQD 81
PS Y SLYVGDL + E+ LY+ FS ++S+RVCRD R SLGYAYVN+ P D
Sbjct: 6 PS-YPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 82 AANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGT 141
A A + +NF I GKP+RIM+S RDPS+RKSG GN+FIKNLD SIDNKAL DTF+AFG
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 142 VLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQ 200
+LSCKV D NG SKGYGFV FE +EAA+ AI+ +NGML+ND++V+VG F R+ER A+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 201 NVSPK-FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDA 259
K FTNVY+ N E + DE LK +FG FG S VM D GKS+ FGFV+F+ +
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 260 AAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDD 319
A AV+++NG N K YVGRAQK+ ER+ +L+ KFEQ + R + +G NLY+KNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 320 SINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKP 379
I+DE+L++ FS FGTITS KVM++ G SKG GF FS PEEAT+A+ EMNG+++ KP
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 380 LYVAVAQRKEERKARLQAQFAQ----IRA-PGGM-SPLASGIP-GYHHGA-PRLGPQQLY 431
LYVA+AQRKEER+A L Q+ Q +RA P + +P P GY A P+ + Y
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAY 422
Query: 432 YGQGTPG-LMP-PQAAGYGFQQQVF---PG-LRPGGP 462
Y L P P+ G + F PG +RP P
Sbjct: 423 YPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAP 459
Score = 438 (159.2 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 102/298 (34%), Positives = 168/298 (56%)
Query: 107 DPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFEN 165
+PS ++++ +L L + F+ G +LS +V D +S GY +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 166 EEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKK 225
A+ A+ +N +I K V + R + V N+++ NL +++ ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG----NIFIKNLDKSIDNKALYD 117
Query: 226 IFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKR 285
F FG I S V+ D +G S+ +GFV+F++ +AA A+EK+NG ND+ +VGR + R
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 286 AEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ 345
EREA+L A+ ++ N+Y+KN + ++DE+LK+LF +FG S KVM D+
Sbjct: 177 KEREAELGARAKEF----------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 346 HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
G SKG GF +F E+A +A++EMNGK + K +YV AQ+K ER+ L+ +F Q++
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 162 (62.1 bits), Expect = 2.4e-127, Sum P(2) = 2.4e-127
Identities = 27/52 (51%), Positives = 44/52 (84%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTK 609
P ++ +MLGE+L+PL++ + P A K+TGMLLE+D +E+LH++ESPE+L++K
Sbjct: 555 PQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSK 606
Score = 48 (22.0 bits), Expect = 2.2e-44, Sum P(2) = 2.2e-44
Identities = 29/139 (20%), Positives = 52/139 (37%)
Query: 404 APGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGPN 463
A +P +P Y + A PQQ Q + P G Q+ + + P
Sbjct: 497 AAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQG-QEPLTASMLASAPP 555
Query: 464 YIMP-------YHLQRQVHP---GQRTG----VRRSGNTHQMQQPQFMRNS-NQGIRYLD 508
+ L + +HP G+ TG + S H ++ P+ +R+ ++ + L
Sbjct: 556 QEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 615
Query: 509 --NARNGTDQSVVSMVPVP 525
A+ ++V S VP
Sbjct: 616 AHQAKEAAQKAVNSATGVP 634
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 1247 (444.0 bits), Expect = 5.3e-127, P = 5.3e-127
Identities = 288/639 (45%), Positives = 385/639 (60%)
Query: 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAAN 84
Y SLYVGDL ++ E+ LY+ FS V+S+RVCRD R SLGYAYVN+ P DA
Sbjct: 9 YPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 68
Query: 85 AKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS 144
A + +NF + GKPIRIM+S RDPS+RKSG GNVFIKNLD SIDNKAL DTF+AFG +LS
Sbjct: 69 ALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 128
Query: 145 CKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQNVS 203
CKV D NG SKGY FV FE ++AA AI+ +NGML+ND++V+VG F R+ER A+
Sbjct: 129 CKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAK 187
Query: 204 PK-FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAA 262
K FTNVY+ N + + D+ LK++F +G S VM D GKSR FGFV+++ + A
Sbjct: 188 AKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANK 247
Query: 263 AVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQ---ERISRYEKLKGANLYLKNLDD 319
AVE++NGT N K +VGRAQK+ ER+A+L+ KFEQ ERISRY+ G NLY+KNLDD
Sbjct: 248 AVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQ---GVNLYIKNLDD 304
Query: 320 SINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKP 379
+I+DEKL++ FS FG+ITS KVM+++ G SKG GF FS PEEAT+A+ EMNG+++G KP
Sbjct: 305 TIDDEKLRKEFSPFGSITSAKVMLEE-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 363
Query: 380 LYVAVAQRKEERKARLQAQFAQIRAPGGMSPLASGI-----P--GYHHGA-PRLGPQQLY 431
LYVA+AQRKEERKA L Q+ Q R G + A+ I P GY A P+ + Y
Sbjct: 364 LYVALAQRKEERKAHLTNQYMQ-RIAGMRAMPANAIINQFQPAGGYFMPAVPQAQNRTTY 422
Query: 432 YGQGTPGLMPPQ-------AAGYGFQQQVFPGLRPGGPN----YIMPYHLQRQVHPGQRT 480
Y M P G G Q + LR GP ++ P + Q G T
Sbjct: 423 YAPNQLTQMRPNPRWQQQGGRGQGGFQGMPSSLRQPGPRANIRHLAP-NASNQGPRGMPT 481
Query: 481 GVRRSGNTHQMQ--QPQFMRNSNQGI---RYLDNARNGTDQSVVSMVPVPFEVSGMXXXX 535
G +R G T Q +P + + + +Y RN T VV P+ + +
Sbjct: 482 GAQRVGGTGQPMGPRPAMGMTTPRAMPPYKYASTIRN-TQPQVVQ--PIALQQAQPAVHV 538
Query: 536 XXXXXXXXXXIXXXXXXXXXXXPDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTE 595
+ P ++ +MLGE+L+PL++ + P A K+TGMLLE+D +E
Sbjct: 539 QGQEPLTASMLAAAP-------PQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSE 591
Query: 596 VLHLIESPEALKTKXXXXXXXXXXXXXRSDVNEKLGSLA 634
+LH++ES E+L++K + D +K+G A
Sbjct: 592 LLHMLESHESLRSKVEEAVAVLQAHQAKKDATQKVGVTA 630
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 1103 (393.3 bits), Expect = 1.0e-126, Sum P(2) = 1.0e-126
Identities = 234/455 (51%), Positives = 303/455 (66%)
Query: 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQD 81
PS Y SLYVGDL Q+V E+ LY+ FS ++S+RVCRD R SLGYAYVN+ P D
Sbjct: 6 PS-YPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 82 AANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGT 141
A A + +NF I G+P+RIM+S RDPS+RKSG GN+FIKNLD SIDNKAL DTF+AFG
Sbjct: 65 AERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 142 VLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQ 200
+LSCKV D NG SKGYGFV FE +EAA+ AI +NGML+ND++V+VG F R+ER A+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 201 NVSPK-FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDA 259
K FTNVY+ N + + DE LK++FG +G S VM D +GKS+ FGFV+F+ +
Sbjct: 184 GARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHED 243
Query: 260 AAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDD 319
A AV+++NG N K +VGRAQK+ ER+ +L+ KFEQ + R + +G NLY+KNLDD
Sbjct: 244 AQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 320 SINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKP 379
I+DE+L++ F FGTITS KVM++ G SKG GF FS PEEAT+A+ EMNG+++ KP
Sbjct: 304 GIDDERLRKEFLPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 380 LYVAVAQRKEERKARLQAQFAQ----IRAPGGM-SPLASGIPGYHHGA-PRLGPQQLYYG 433
LYVA+AQRKEER+A L Q+ Q +R P + +P Y A P + YY
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQRMASVRVPNPVINPYQPPPSSYFMAAIPPAQNRAAYYP 422
Query: 434 QGTPG-LMP-PQAAGYGFQQQVF---PG-LRPGGP 462
G L P P+ G + F PG +RP P
Sbjct: 423 PGQIAQLRPSPRWTAQGARPHPFQNMPGAIRPTAP 457
Score = 437 (158.9 bits), Expect = 2.6e-56, Sum P(2) = 2.6e-56
Identities = 100/298 (33%), Positives = 169/298 (56%)
Query: 107 DPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFEN 165
+PS ++++ +L + L + F+ G +LS +V D +S GY +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 166 EEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKK 225
A+ A+ +N +I + V + R + V N+++ NL +++ ++ L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVG----NIFIKNLDKSIDNKALYD 117
Query: 226 IFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKR 285
F FG I S V+ D +G S+ +GFV+F++ +AA A++K+NG ND+ +VGR + R
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 286 AEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ 345
EREA+L A+ ++ N+Y+KN D +NDE+LKE+F ++G S KVM D
Sbjct: 177 KEREAELGARAKEF----------TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD 226
Query: 346 HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
+G SKG GF +F E+A +A++EMNGK + K ++V AQ+K ER+ L+ +F Q++
Sbjct: 227 NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMK 284
Score = 162 (62.1 bits), Expect = 1.0e-126, Sum P(2) = 1.0e-126
Identities = 27/52 (51%), Positives = 44/52 (84%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTK 609
P ++ +MLGE+L+PL++ + P A K+TGMLLE+D +E+LH++ESPE+L++K
Sbjct: 553 PQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSK 604
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 1092 (389.5 bits), Expect = 1.5e-125, Sum P(2) = 1.5e-125
Identities = 233/455 (51%), Positives = 298/455 (65%)
Query: 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQD 81
PS Y SLYVGDL +V E+ LY+ FS ++S+RVCRD R SLGYAYVN+ P D
Sbjct: 6 PS-YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 82 AANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGT 141
A A + +NF I GKP+RIM+S RDPS+RKSG GN+FIKNLD SIDNKAL DTF+AFG
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 142 VLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQ 200
+LSCKV D NG SKGYGFV FE +EAA+ AI +NGML+ND++V+VG F R+ER A+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 201 NVSPK-FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDA 259
K FTNVY+ N E + DE LK+ FG +G S VM D GKSR FGFV+F+ +
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHED 243
Query: 260 AAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDD 319
A AV+ +NG N K +VGRAQK+ ER+ +L+ KFEQ + R + +G NLY+KNLDD
Sbjct: 244 AQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 320 SINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKP 379
I+DE+L++ F+ FG+ITS KVM++ G SKG GF FS PEEAT+A+ EMNG+++ KP
Sbjct: 304 GIDDERLRKEFTPFGSITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 380 LYVAVAQRKEERKARLQAQFAQ----IRAPGGM-SPLASGIPGYHHGA-PRLGPQQLYYG 433
LYVA+AQRKEER+A L Q+ Q +R P + +P Y A P + YY
Sbjct: 363 LYVALAQRKEERQAHLTNQYMQRMASVRVPNPVINPYQPPPSSYFMAAIPPAQNRAAYYP 422
Query: 434 QGTPG-LMP-PQAAGYGFQQQVFPGL----RPGGP 462
G L P P+ G + F + RP P
Sbjct: 423 PGQIAQLRPSPRWTAQGARPHPFQNMAGAIRPSAP 457
Score = 431 (156.8 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
Identities = 98/298 (32%), Positives = 168/298 (56%)
Query: 107 DPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFEN 165
+PS ++++ +L + L + F+ G +LS +V D +S GY +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 166 EEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKK 225
A+ A+ +N +I K V + R + V N+++ NL +++ ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG----NIFIKNLDKSIDNKALYD 117
Query: 226 IFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKR 285
F FG I S V+ D +G S+ +GFV+F++ +AA A++K+NG ND+ +VGR + R
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 286 AEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ 345
EREA+L A+ ++ N+Y+KN + ++DE+LKE F ++G S KVM D
Sbjct: 177 KEREAELGARAKEF----------TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDD 226
Query: 346 HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
HG S+G GF +F E+A +A+++MNGK + K ++V AQ+K ER+ L+ +F Q++
Sbjct: 227 HGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMK 284
Score = 162 (62.1 bits), Expect = 1.5e-125, Sum P(2) = 1.5e-125
Identities = 27/52 (51%), Positives = 44/52 (84%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTK 609
P ++ +MLGE+L+PL++ + P A K+TGMLLE+D +E+LH++ESPE+L++K
Sbjct: 553 PQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSK 604
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 924 (330.3 bits), Expect = 9.3e-125, Sum P(3) = 9.3e-125
Identities = 187/369 (50%), Positives = 252/369 (68%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ SLYVG+L+ +V E+ LY+LFS + QV S+RVCRD R SLGYAYVNY++ A
Sbjct: 41 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERAL 100
Query: 87 EALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCK 146
+ LN+ I GKP RIM+S RDP++RK+G GNVFIKNLD++IDNKAL DTFAAFG +LSCK
Sbjct: 101 DELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCK 160
Query: 147 VAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQ--QNVSP 204
VA D G SKGYGFV +E EAA NAIK +NGML+NDK+V+VG + +++R + +
Sbjct: 161 VAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKA 220
Query: 205 KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAV 264
FTN+Y+ N+ V DE+ +K+F FG ITSA + +DS+GKSR FGFVNF + ++A AAV
Sbjct: 221 NFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAV 280
Query: 265 EKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDE 324
E++N + YVGRAQK+ ERE +LR ++E R+ + K +G NLY+KNL D ++D+
Sbjct: 281 EEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDD 340
Query: 325 KLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATR-ALNEMNGKMIGRKPLYVA 383
KL+ELF +GTITS KVM D + PE T+ + N+ N K + A
Sbjct: 341 KLRELFGPYGTITSAKVMRDTAPVETAT-------PESETKESANKENEKAAEGEKEPAA 393
Query: 384 VAQRKEERK 392
+ KEE+K
Sbjct: 394 EEKEKEEKK 402
Score = 387 (141.3 bits), Expect = 4.6e-46, Sum P(3) = 4.6e-46
Identities = 93/288 (32%), Positives = 154/288 (53%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
++++ LD S+ L + F++ G V S +V D+ +S GY +V + + + A+
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITS 235
LN LI K + ++ +R ++ NV++ NL + ++ L F FG I S
Sbjct: 103 LNYTLIKGKPCRI-MWSQRDPALRKTGQG---NVFIKNLDSAIDNKALHDTFAAFGNILS 158
Query: 236 AIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAK 295
V +D G S+ +GFV++++ +AA A++ +NG NDK +VG + +R++ K
Sbjct: 159 CKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQS----K 214
Query: 296 FEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFA 355
FE+ K N+Y+KN+D + DE+ ++LF +FG ITS + D G S+G GF
Sbjct: 215 FEEM------KANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFV 268
Query: 356 AFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
FS E A A+ EMN K + + LYV AQ+K ER+ L+ Q+ R
Sbjct: 269 NFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAAR 316
Score = 257 (95.5 bits), Expect = 1.3e-44, Sum P(3) = 1.3e-44
Identities = 54/184 (29%), Positives = 106/184 (57%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
+G GNV ++ +L+ ++ L+D F+ ++S +V +D+ S GY +V+Y + A
Sbjct: 127 TGQGNV--FIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSK-GYGFVHYETAEAA 183
Query: 83 ANAKEALNFMPINGKPIRIMY--SHRDPSIR----KSGYGNVFIKNLDTSIDNKALCDTF 136
NA + +N M +N K + + + S +D + K+ + N++IKN+D ++++ F
Sbjct: 184 NNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLF 243
Query: 137 AAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQE 196
FG + S ++ DS G+S+G+GFV F E+AQ A++ +N + +++YVG ++ E
Sbjct: 244 EKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHE 303
Query: 197 RAQQ 200
R ++
Sbjct: 304 REEE 307
Score = 213 (80.0 bits), Expect = 6.4e-25, Sum P(3) = 6.4e-25
Identities = 59/203 (29%), Positives = 102/203 (50%)
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAA 262
P ++YV L +VT+ L ++F G + S V +D+ +S + +VN+
Sbjct: 39 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGER 98
Query: 263 AVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
A+++LN T K + +Q R+ LR K N+++KNLD +I+
Sbjct: 99 ALDELNYTLIKGKPCRIMWSQ----RDPALR------------KTGQGNVFIKNLDSAID 142
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYV 382
++ L + F+ FG I SCKV D+ G SKG GF + E A A+ +NG ++ K ++V
Sbjct: 143 NKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV 202
Query: 383 AVAQRKEERKAR---LQAQFAQI 402
K++R+++ ++A F I
Sbjct: 203 GHHISKKDRQSKFEEMKANFTNI 225
Score = 193 (73.0 bits), Expect = 9.3e-125, Sum P(3) = 9.3e-125
Identities = 56/151 (37%), Positives = 79/151 (52%)
Query: 347 GFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQF-AQIRAP 405
G SKG GF FS P+EA++A+ EMN +M+ KPLYVA+AQRK+ R+++L+A A+
Sbjct: 414 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNNIR 473
Query: 406 GGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGPNYI 465
+ A+G+ G + AP + +YG G G +P G F Q PG+ G P
Sbjct: 474 QQQAAAAAGM-GQAYMAPAV-----FYGPGQQGFIPGAQRGGMFPPQ--PGMMMGMPGRP 525
Query: 466 MPYHLQRQVHPGQRTGVRRSGNTHQMQQPQF 496
Y PGQ+ G R +Q P F
Sbjct: 526 GQYP---GPFPGQQGG--RGVGPNQQIPPNF 551
Score = 144 (55.7 bits), Expect = 9.3e-125, Sum P(3) = 9.3e-125
Identities = 28/52 (53%), Positives = 37/52 (71%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTK 609
P + +MLGE LYP ++ +P A K+TGMLLEMD TE+L L+E EAL+ K
Sbjct: 643 PQQQKQMLGEALYPKIQATQPELAGKITGMLLEMDNTELLGLLEDDEALRAK 694
Score = 111 (44.1 bits), Expect = 1.9e-37, Sum P(4) = 1.9e-37
Identities = 26/67 (38%), Positives = 36/67 (53%)
Query: 244 GKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISR 303
GKS+ FGFV F SPD A+ AV ++N N K YV AQ++ R + L A + R
Sbjct: 414 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNNIR 473
Query: 304 YEKLKGA 310
++ A
Sbjct: 474 QQQAAAA 480
Score = 98 (39.6 bits), Expect = 7.9e-16, Sum P(4) = 7.9e-16
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 153 GQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQ 200
G+SKG+GFV F + + A A+ +N ++N K +YV L R+ R Q
Sbjct: 414 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 461
Score = 77 (32.2 bits), Expect = 1.0e-13, Sum P(4) = 1.0e-13
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 68 SLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRKS 113
S G+ +V +S+P +A+ A +N +NGKP+ + + R +R+S
Sbjct: 416 SKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK-DVRRS 460
Score = 72 (30.4 bits), Expect = 9.9e-25, Sum P(3) = 9.9e-25
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRD 62
S Y V+LYV +L +V++ +L +LF + S +V RD
Sbjct: 321 SKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRD 360
Score = 52 (23.4 bits), Expect = 6.4e-110, Sum P(3) = 6.4e-110
Identities = 26/81 (32%), Positives = 32/81 (39%)
Query: 406 GGMSP----LASGIPGYHHGAPRLGP-QQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRPG 460
GGM P + G+PG P P QQ G G +PP G PG+ P
Sbjct: 508 GGMFPPQPGMMMGMPGRPGQYPGPFPGQQGGRGVGPNQQIPPNFQGLPMGAMQGPGI-PN 566
Query: 461 GPNYIMPYHLQRQVHPGQRTG 481
G Y M +Q Q G+ G
Sbjct: 567 GMGYPM---VQGQFGGGRGRG 584
Score = 46 (21.3 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 287 EREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSE 332
E + LRAK + E +S Y++ Y+KN D EK KE E
Sbjct: 686 EDDEALRAKVD-EALSVYDE------YMKNKSDEPAAEKPKEAAQE 724
Score = 42 (19.8 bits), Expect = 7.2e-109, Sum P(3) = 7.2e-109
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 433 GQG-TPGLMPPQAAGYGFQQQVFP-G--LRPG 460
G+G PG+ P GYG + P G +RPG
Sbjct: 582 GRGQVPGMGGPMRGGYGGGRGGVPLGGQMRPG 613
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 1214 (432.4 bits), Expect = 1.7e-123, P = 1.7e-123
Identities = 279/611 (45%), Positives = 371/611 (60%)
Query: 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQD 81
PS Y SLYVGDL +V E+ LY+ FS ++S+RVCRD R SLGYAYVN+ P D
Sbjct: 6 PS-YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPAD 64
Query: 82 AANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGT 141
A A + +NF I G+P+RIM+S RDPS+RKSG GN+FIKNLD SIDNKAL DTF+AFG
Sbjct: 65 AERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 142 VLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQ 200
+LSCKV D NG SKGYGFV FE EAA+ AI+ +NGML+ND++V+VG F R+ER A+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEM 183
Query: 201 NVSPK-FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDA 259
K FTNVY+ N E + DE LK+IF +G S VM D GKS+ FGFV+F+ +
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHED 243
Query: 260 AAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDD 319
A AV+++NG N K YVGRAQK+ ER+ +L+ KFEQ + R + +G NLY+KNLDD
Sbjct: 244 AQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDD 303
Query: 320 SINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKP 379
++DE+L++ FS FGTITS KVM++ G SKG GF FS PEEAT+A+ EMNG+++ KP
Sbjct: 304 GLDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 380 LYVAVAQRKEERKARLQAQFAQ----IRA-PGG-MSPLASGIP-GYHHGA-PRLGPQQLY 431
LYVA+AQRKEER+A L +Q+ Q +RA P ++P P GY A P+ + Y
Sbjct: 363 LYVALAQRKEERQAHLTSQYMQRMASVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRAAY 422
Query: 432 YGQGTPG-LMP-PQAAGYGFQQQVFPGLRPGGPNYIMPYHLQRQVHPGQRTGVRRSGNTH 489
Y L P P+ A G + Q F + PN + R P VR +
Sbjct: 423 YPTSQLAQLRPSPRWATQGVRPQHFQNM----PNAAVRPSAPR---PQTFNPVRPASQVP 475
Query: 490 QMQQPQFMRNSNQGIRYLDNARNGTDQSVVSMVPVPFEVSGMXXXXXXXXXXXXXXIXX- 548
+M Q M + G R A T + V VP G+ +
Sbjct: 476 RMMTSQRMGSQAMGPRPAA-AGAATGPAQVRGVPQYKYAPGVRNPQQRMPTQPQVPMQQP 534
Query: 549 ----------XXXXXXXXXPDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLH 598
P ++ +MLGE+L+PL++N+ P A K+TGMLLE+D +E+LH
Sbjct: 535 AVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLH 594
Query: 599 LIESPEALKTK 609
++ESPE+L++K
Sbjct: 595 MLESPESLRSK 605
Score = 432 (157.1 bits), Expect = 1.8e-40, P = 1.8e-40
Identities = 100/298 (33%), Positives = 168/298 (56%)
Query: 107 DPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFEN 165
+PS ++++ +L + L + F+ G +LS +V D +S GY +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQ 61
Query: 166 EEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKK 225
A+ A+ +N +I + V + R + V N+++ NL +++ ++ L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVG----NIFIKNLDKSIDNKALYD 117
Query: 226 IFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKR 285
F FG I S V+ D +G S+ +GFV+F++ +AA A+EK+NG ND+ +VGR + R
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 286 AEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ 345
EREA++ A+ ++ N+Y+KN + ++DEKLKE+F ++G S +VM D
Sbjct: 177 KEREAEMGARAKEF----------TNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDD 226
Query: 346 HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
G SKG GF +F E+A RA++EMNGK + K +YV AQ+K ER+ L+ +F Q++
Sbjct: 227 SGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMK 284
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 1060 (378.2 bits), Expect = 4.5e-123, Sum P(3) = 4.5e-123
Identities = 212/390 (54%), Positives = 277/390 (71%)
Query: 24 GYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAA 83
G+ SLYVGDL +V E+ LY+ FS ++S+RVCRD + R SLGYAY+N+ P DA
Sbjct: 7 GFPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAE 66
Query: 84 NAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVL 143
A + +NF I G+PIRIM+S RDP +RKSG GN+FIKNL+ SIDNKAL DTF+ FG +L
Sbjct: 67 RALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNIL 126
Query: 144 SCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQ--N 201
SCKV D +G S+G+GFV FE EAAQ AI +NGML+ND++V+VG F R+ER +
Sbjct: 127 SCKVVCDDHG-SRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFKSRREREVELGA 185
Query: 202 VSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAA 261
+ +FTN+YV NL V ++ L+ +F FG + S VM+D G SR FGFVNFQ + A
Sbjct: 186 RAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQ 245
Query: 262 AAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSI 321
AV +NG + ++ YVGRAQKR ER+++L+ +FEQ + R + +G NLY+KNLDDSI
Sbjct: 246 KAVMDMNGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSI 305
Query: 322 NDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLY 381
+DEKL++ FS +G ITS KVM + G SKG GF FS PEEAT+A+ EMNG+++G KPLY
Sbjct: 306 DDEKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLY 364
Query: 382 VAVAQRKEERKARLQAQFAQ----IRAPGG 407
VA+AQRKEERKA L Q+ Q +RA GG
Sbjct: 365 VALAQRKEERKAILTNQYMQRLSTVRALGG 394
Score = 135 (52.6 bits), Expect = 4.5e-123, Sum P(3) = 4.5e-123
Identities = 25/50 (50%), Positives = 38/50 (76%)
Query: 560 DRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTK 609
++ +M+GE+LYPL+ N A K+TGMLLE+D +E+L ++ESPE+L K
Sbjct: 582 EQKQMIGERLYPLIYNTHTQLAGKITGMLLEIDNSELLLMLESPESLNAK 631
Score = 50 (22.7 bits), Expect = 4.5e-123, Sum P(3) = 4.5e-123
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 433 GQGTPGLMPPQAAGYGFQQQVFPGLRPGGPN 463
G T + P G Q ++PG PG P+
Sbjct: 493 GPATSHVAAPPGPGQQCQAGLYPGATPGAPH 523
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 1085 (387.0 bits), Expect = 3.5e-122, Sum P(2) = 3.5e-122
Identities = 228/430 (53%), Positives = 293/430 (68%)
Query: 24 GYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAA 83
GY SLYVGDL +V E+ LY+ FS ++S+RVCRD + R SLGYAY+N+ P DA
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAE 66
Query: 84 NAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVL 143
A + +NF I G+PIRIM+S RDP +RKSG GNVFIKNL+ SIDNKAL DTF+ FG +L
Sbjct: 67 RALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNIL 126
Query: 144 SCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQNV 202
SCKV D +G S+G+GFV FE EAAQNAI+ +NGML+ND++V+VG F R+ER A+
Sbjct: 127 SCKVVCDDHG-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRREREAELGA 185
Query: 203 SP-KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAA 261
+FTN+YV NL V + L+ +F FG I S VM+D G SR FGFVNF+ + A
Sbjct: 186 RALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQ 245
Query: 262 AAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSI 321
AV +NG + ++ YVGRAQKR ER+ +L+ +FEQ + R + +G NLY+KNLDDSI
Sbjct: 246 KAVTDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSI 305
Query: 322 NDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLY 381
+DEKL++ F+ +G ITS KVM + G SKG GF FS PEEAT+A+ EMNG+++G KPLY
Sbjct: 306 DDEKLRKEFAPYGMITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY 364
Query: 382 VAVAQRKEERKARLQAQFAQ----IRAPGGMSPLASGI--P-GYHHGA-PRLGPQQLYYG 433
VA+AQRKEERKA L Q+ Q +RA G SPL + P Y A P+ Q YY
Sbjct: 365 VALAQRKEERKAILTNQYIQRLSTMRALG--SPLLGSLQQPTSYFLPAVPQPPAQSPYYA 422
Query: 434 QGTPGLMPPQ 443
G P PP+
Sbjct: 423 SGPPVQPPPR 432
Score = 137 (53.3 bits), Expect = 3.5e-122, Sum P(2) = 3.5e-122
Identities = 25/50 (50%), Positives = 39/50 (78%)
Query: 560 DRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTK 609
++ +M+GE+LYPL+ N+ A K+TGMLLE+D +E+L ++ESPE+L K
Sbjct: 541 EQKQMIGERLYPLIYNMHTQLAGKITGMLLEIDNSELLLMLESPESLSAK 590
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 906 (324.0 bits), Expect = 4.0e-122, Sum P(3) = 4.0e-122
Identities = 176/326 (53%), Positives = 234/326 (71%)
Query: 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQD 81
P + SLYVG+L+ +V E+ L++LFSQ+ V S+RVCRD R SLGYAYVNY+ D
Sbjct: 55 PHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTAD 114
Query: 82 AANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGT 141
A E LN+ I G+P RIM+S RDP++RK+G GNVFIKNLD +IDNKAL DTFAAFG
Sbjct: 115 GEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGN 174
Query: 142 VLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQ- 200
+LSCKVA D NG SKGYGFV +E +EAA AIK +NGML+N+K+VYVG + +++R +
Sbjct: 175 ILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKF 234
Query: 201 -NVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSD-GKSRCFGFVNFQSPD 258
+ FTN+YV N+ VTD++ + +F +G +TS+ + +D + GKSR FGFVNF S +
Sbjct: 235 DEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHE 294
Query: 259 AAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLD 318
A+ AV++LN + + YVGRAQK+ ERE +LR +E R + K +G NLY+KNLD
Sbjct: 295 DASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLD 354
Query: 319 DSINDEKLKELFSEFGTITSCKVMVD 344
D ++DEKL++LFSEFG ITS KVM D
Sbjct: 355 DEVDDEKLRQLFSEFGPITSAKVMRD 380
Score = 360 (131.8 bits), Expect = 2.3e-40, Sum P(3) = 2.3e-40
Identities = 85/289 (29%), Positives = 157/289 (54%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
++++ LD S+ L + F+ G+V S +V D+ +S GY +V + + A++
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITS 235
LN LI + + ++ +R ++ NV++ NL + ++ L F FG I S
Sbjct: 122 LNYTLIKGRPCRI-MWSQRDPALRKTGQG---NVFIKNLDVAIDNKALHDTFAAFGNILS 177
Query: 236 AIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAK 295
V +D +G S+ +GFV++++ +AA+ A++ +NG N+K YVG + +R++ K
Sbjct: 178 CKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQS----K 233
Query: 296 FEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGF 354
F++ K N+Y+KN++ + D++ + LF ++G +TS + DQ G S+G GF
Sbjct: 234 FDEM------KANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGF 287
Query: 355 AAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
F+ E+A++A+ E+N K + LYV AQ+K ER+ L+ + R
Sbjct: 288 VNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAAR 336
Score = 214 (80.4 bits), Expect = 7.6e-39, Sum P(3) = 7.6e-39
Identities = 49/144 (34%), Positives = 81/144 (56%)
Query: 112 KSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSN-GQSKGYGFVQFENEEAAQ 170
K+ + N+++KN++ + + F +G V S +A D G+S+G+GFV F + E A
Sbjct: 238 KANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDAS 297
Query: 171 NAIKMLNGMLINDKQVYVGLFVRRQER----------AQQNVSPKF--TNVYVNNLAETV 218
A++ LN + + +YVG ++ ER A+Q + K+ N+Y+ NL + V
Sbjct: 298 KAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEV 357
Query: 219 TDEDLKKIFGHFGTITSAIVMKDS 242
DE L+++F FG ITSA VM+DS
Sbjct: 358 DDEKLRQLFSEFGPITSAKVMRDS 381
Score = 201 (75.8 bits), Expect = 4.0e-122, Sum P(3) = 4.0e-122
Identities = 53/121 (43%), Positives = 74/121 (61%)
Query: 347 GFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRAPG 406
G SKG GF F+ P++AT+A+ EMN +M+ KPLYVA+AQRK+ RK +L+ Q Q R
Sbjct: 430 GKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQLE-QSIQARNQL 488
Query: 407 GM--SPLASGIPGYHHGAPRLGPQQLYYGQGT-PGLMPPQAAGYG--FQQQVFPGLRPGG 461
M + A+G+P + AP ++YG G+ PG MPP A G G + Q P ++PG
Sbjct: 489 RMQQAAAAAGMPQQYMQAP------VFYGPGSQPGFMPP-AGGRGMPYPQGGMP-MQPGR 540
Query: 462 P 462
P
Sbjct: 541 P 541
Score = 129 (50.5 bits), Expect = 4.0e-122, Sum P(3) = 4.0e-122
Identities = 24/52 (46%), Positives = 38/52 (73%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTK 609
P + ++LGE ++P ++ I P A K+TGMLLEMD TE++ L+E+ AL++K
Sbjct: 677 PGQQKQILGEAIFPKIQAIHPELAGKITGMLLEMDNTELVALVENDGALRSK 728
Score = 102 (41.0 bits), Expect = 6.0e-11, Sum P(3) = 6.0e-11
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 153 GQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQ 200
G+SKG+GFV F N + A A+ +N ++N+K +YV L R+ R Q
Sbjct: 430 GKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQ 477
Score = 101 (40.6 bits), Expect = 2.0e-29, Sum P(4) = 2.0e-29
Identities = 25/71 (35%), Positives = 36/71 (50%)
Query: 240 KDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQE 299
K GKS+ FGFV F +PD A AV ++N N+K YV AQ++ R+ L +
Sbjct: 426 KSKLGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQLEQSIQAR 485
Query: 300 RISRYEKLKGA 310
R ++ A
Sbjct: 486 NQLRMQQAAAA 496
Score = 77 (32.2 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 61 RDQSKRS-SLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRKS 113
+ +SK S G+ +V ++NP DA A +N +N KP+ + + R +RK+
Sbjct: 424 KSKSKLGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRK-DVRKN 476
Score = 49 (22.3 bits), Expect = 3.9e-106, Sum P(3) = 3.9e-106
Identities = 26/84 (30%), Positives = 35/84 (41%)
Query: 406 GGMSPLASGIPG-YHHG-APRLG-----PQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLR 458
GGM P+ G PG + G A + G PQ + G PG PPQ FP +
Sbjct: 532 GGM-PMQPGRPGQFPAGFAAQQGGRGAMPQGIPPMYGLPGQFPPQGP--------FP--Q 580
Query: 459 PGGPNYIMPYH-LQRQVHPGQRTG 481
P P ++ +Q+ G R G
Sbjct: 581 PNNPQFLAAMQQIQQSALAGGRGG 604
Score = 45 (20.9 bits), Expect = 1.0e-105, Sum P(3) = 1.0e-105
Identities = 20/59 (33%), Positives = 23/59 (38%)
Query: 405 PGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQAA--GYGFQQQVFPGLRPGG 461
P G P+ G+P G P G G G PG PP A G G + G P G
Sbjct: 605 PAGRGPMQGGVPV--PGMP--G------GAGLPGF-PPNARQQGPGAGRGAAAGRAPAG 652
Score = 42 (19.8 bits), Expect = 2.1e-105, Sum P(3) = 2.1e-105
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 407 GMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYG 448
GM P +G+PG+ A + GP G+G P A G
Sbjct: 619 GM-PGGAGLPGFPPNARQQGPGA---GRGAAAGRAPAGAPAG 656
Score = 39 (18.8 bits), Expect = 6.2e-93, Sum P(2) = 6.2e-93
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHAS 582
PDD T+ + E +V N +P++ +
Sbjct: 443 PDDATKAVAEMNQRMVNN-KPLYVA 466
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 1201 (427.8 bits), Expect = 4.0e-122, P = 4.0e-122
Identities = 279/610 (45%), Positives = 358/610 (58%)
Query: 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAAN 84
Y SLYVGDL +V E+ LY FS Q++S+RVCRD R SLGYAY+N+ P DA
Sbjct: 8 YPLASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAEC 67
Query: 85 AKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS 144
A + +N+ I G+PIRIM+S RDP +RKSG GN+FIKN+D SIDNKAL DTF+AFG +LS
Sbjct: 68 ALDTMNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILS 127
Query: 145 CKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQNVS 203
CKV D NG SKGYGFV FE +EAA AI+ +NGML+ND++V+VG F R+ER A+
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAK 186
Query: 204 P-KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAA 262
+FTNVY+ N E + E LK IF FG S VM D G+SR FGFVNF + A
Sbjct: 187 AVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARR 246
Query: 263 AVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
AV ++NG N +V YVGRAQKR ER+ +L+ KFEQ + R ++ +G NLY+KNLDDSI+
Sbjct: 247 AVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSID 306
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYV 382
DEKL++ F+ +GTITS KVM D G S+G GF FS PEEAT+A+ EMNG+++ KPLYV
Sbjct: 307 DEKLRKEFAPYGTITSAKVMTDG-GHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
Query: 383 AVAQRKEERKARLQAQFAQ----IRA-PGGMSPLA--SGIPGYHHGAPRLGPQQLYYGQG 435
A+AQRKEERKA L Q+ Q IRA PG P G GY+ + PQ +
Sbjct: 366 ALAQRKEERKAILTNQYIQRLASIRAIPGPAIPTTYQQG-SGYYMTSV---PQVRSFYNA 421
Query: 436 TPGLMPPQAAGYGFQQQVFPGLRPGGPNYIMPYHLQRQV---HPGQRTGVRRSGNTH--Q 490
P L P A + FQ P R GP P RQ P R +T
Sbjct: 422 VPNLRP--APRWAFQA---P--RTQGP---FPAQFVRQAVPRRPSTTISTVRQASTQVPH 471
Query: 491 MQQPQFMRN---SNQGIRYLDNARNGTDQ--------SVVSMVPVPFEVSGMXXXXXXXX 539
+ Q M N G R A G Q +V ++ P V
Sbjct: 472 INNTQRMANIGTQTAGGRAAGTAVRGVSQYKYSAGVRNVQQVINAPAPVVHQVVQNTEPA 531
Query: 540 XXXXXXIXXXXXXXXXXXPDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHL 599
++ ++LGE+LYPL++ + P A K+TGMLLE+D +E+LH+
Sbjct: 532 VHMKGQEPLTASMLAAAPLKEQKQLLGERLYPLIQILHPALAGKITGMLLEIDNSELLHM 591
Query: 600 IESPEALKTK 609
+ESPE+L K
Sbjct: 592 LESPESLHAK 601
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 1193 (425.0 bits), Expect = 2.8e-121, P = 2.8e-121
Identities = 273/614 (44%), Positives = 370/614 (60%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
+GY SLYVGDL +V E+ LY+ FS ++S+RVCRD + R SLGYAY+N+ P DA
Sbjct: 6 AGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADA 65
Query: 83 ANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTV 142
A + +NF I G+PIRIM+S RDP +RKSG GNVFIKNLD SIDNKAL DTF+AFG +
Sbjct: 66 ERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNI 125
Query: 143 LSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNV 202
LSCKV D +G S+GYGFV FE +EAA AI+ +NGML+ND++V+VG F R+ER +
Sbjct: 126 LSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYG 184
Query: 203 SP--KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAA 260
+ +FTNVY+ N E + D+ L++IF FG S VM D G+SR FGFVN+ + + A
Sbjct: 185 AKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEA 244
Query: 261 AAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQ---ERISRYEKLKGANLYLKNL 317
AV ++NG N ++ YVGRAQKR ER+ +L+ KFEQ ERI+RY+ G NLY+KNL
Sbjct: 245 QKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQ---GVNLYVKNL 301
Query: 318 DDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGR 377
DD I+D++L++ FS +GTITS KVM + G SKG GF FS PEEAT+A+ EMNG+++
Sbjct: 302 DDGIDDDRLRKEFSPYGTITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 378 KPLYVAVAQRKEERKARLQAQFAQ----IRA-PGGMSPLASGIPGYHHGAPRLGPQQLYY 432
KPLYVA+AQRKEERKA L Q+ Q +RA PG + Y A P + +Y
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPAMPQPPNRTFY 420
Query: 433 GQGTPGLMPP--QAAGYGFQQQVFPGLRPGGPNYIMPYHLQRQVHPGQRTG----VRRSG 486
+P + P QA + Q RP P Y P L R V P + + ++++
Sbjct: 421 ---SPNPVAPVRQAPQWTSHQS-----RP--PQYQPPAPLMRAVPPRRMSSNISTMKQAS 470
Query: 487 NTHQMQQPQFMRNSNQGIRYLDNARNGTDQSVVSMVP-----------VPFEVSGMXXXX 535
P R +N G + AR + S++ +P P +
Sbjct: 471 TQVPRVAPHSQRVANIGTQTA-GARAQVNPSIMRTMPHYKYSCAVRNVQPIGTNTHLQQV 529
Query: 536 XXXXXXXXXXIXXXXXXXXXXXPDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTE 595
P ++ +MLGE+LYPL+ + P A K+TGMLLE+D +E
Sbjct: 530 MEPAVLMQGQEPLTASSLASAPPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSE 589
Query: 596 VLHLIESPEALKTK 609
+LH++ESPE+L +K
Sbjct: 590 LLHMLESPESLHSK 603
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 1192 (424.7 bits), Expect = 3.6e-121, P = 3.6e-121
Identities = 265/598 (44%), Positives = 359/598 (60%)
Query: 24 GYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAA 83
GY SLYVGDL +V E+ LY+ FS ++S+RVCRD + R SLGYAY+N+ P DA
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAE 66
Query: 84 NAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVL 143
A + +NF I G+PIRIM+S RDP +RKSG GN+FIKNL+ SIDNKAL DTF+ FG +L
Sbjct: 67 RALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNIL 126
Query: 144 SCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQ--N 201
SCKV D +G S+G+GFV FE EAAQNAI +NGML+ND++V+VG F R+ER +
Sbjct: 127 SCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGA 185
Query: 202 VSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAA 261
+ +FTN+YV NL V ++ L+ +F FG + S VM+D G SR FGFVNF+ + A
Sbjct: 186 RAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQ 245
Query: 262 AAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSI 321
AV +NG + ++ YVGRAQKR ER+ +L+ +FEQ + R + +G NLY+KNLDDSI
Sbjct: 246 KAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSI 305
Query: 322 NDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLY 381
+DEKL++ FS +G ITS KVM + G SKG GF FS PEEAT+A+ EMNG+++G KPLY
Sbjct: 306 DDEKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY 364
Query: 382 VAVAQRKEERKARLQAQFAQ----IRAPGGMSPLASGI--PGYHH--GAPRLGPQQLYYG 433
VA+AQRKEERKA L Q+ Q +RA GG P+ P + P+ Q YYG
Sbjct: 365 VALAQRKEERKAILTNQYMQRLSTMRALGG--PILGSFQQPASYFLPAVPQPPAQAPYYG 422
Query: 434 QGTPGLMPPQAAGYGFQQQVFPGLRPGGPNYIMPYHLQRQVHPGQRTGVRRSGNTHQMQQ 493
G P + P A + Q P G + + P + R+ P G R +TH
Sbjct: 423 SGPP-IQP--APRWTAQPPRPSSAYPPGASVVRPAAMSRR--PLTPVGSSRQVSTHVPHL 477
Query: 494 -PQFMRNSNQGIRYLDNARNGTDQSVVSMVPVPFEVSGMXXXXXXXXXXXXXXIXXXXXX 552
P R +N G + + G ++ +
Sbjct: 478 VPHTQRVANIGTQTTGPSMTGCSTPSRPLLTHTYSTPAHRTDRVQEPAVHVPGQEPLTAS 537
Query: 553 XXXXXP-DDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTK 609
P ++ +M+GE+L+PLV N+ A K+TGMLLE+D +E+L ++ESPE+L K
Sbjct: 538 MLAAAPLHEQKQMIGERLFPLVYNVHAHLAGKITGMLLEIDNSELLLMLESPESLNAK 595
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 1095 (390.5 bits), Expect = 5.1e-121, Sum P(2) = 5.1e-121
Identities = 233/467 (49%), Positives = 303/467 (64%)
Query: 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAAN 84
Y SLY+GDL +V+E+ L++ FS V+S+RVCRD + R SLGYAYVN+ P DA
Sbjct: 54 YSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAER 113
Query: 85 AKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS 144
A + +NF I+G+P+RIM+S RDP+ R++G GN+FIKNLD IDNK++ DTF+ FG +LS
Sbjct: 114 ALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILS 173
Query: 145 CKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQ--NV 202
CKVA D G SKGYGFV FE E +AQ AI+ +NGML++DK+VYVG F R +R ++
Sbjct: 174 CKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGES 233
Query: 203 SPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAA 262
K+TNV+V N E + E L +F FG ITSA+VM D+ GK + FGFV F DAA
Sbjct: 234 GLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQ 293
Query: 263 AVEKLNGTT--NNDKVWYVGRAQKRAEREADLRAKFE---QERISRYEKLKGANLYLKNL 317
AVEKLN + D V RAQK++ER A+L+ K+E QER+ RY+ G NLY+KN+
Sbjct: 294 AVEKLNDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQ---GVNLYVKNI 350
Query: 318 DDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGR 377
++ +ND+ L++ FS FGTITS KVMVD++G SKG GF F PEEAT A+ +MN KMIG
Sbjct: 351 EEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGA 410
Query: 378 KPLYVAVAQRKEERKARLQAQFAQIRAPGGMSPLASGIPG----YHHGAPRLGPQQLYYG 433
KPLYVA+AQRKE+R+A+L +Q+ Q A M ASG+P Y G
Sbjct: 411 KPLYVALAQRKEDRRAQLASQYMQRLATLRMGQQASGVPAMTQLYQPGQQGYFVPNPMNA 470
Query: 434 QGTPGLMPPQAAGYGFQQQVFPGLRPGGPNYIMPYHL-QRQVHPGQR 479
QG PG P A Q + PG R M Y QRQV+P Q+
Sbjct: 471 QGRPGFQPQSA-----QIRGPPGQRVFQNQMFMQYPFNQRQVYPQQQ 512
Score = 203 (76.5 bits), Expect = 7.5e-22, Sum P(3) = 7.5e-22
Identities = 58/196 (29%), Positives = 96/196 (48%)
Query: 201 NVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGK-SRCFGFVNFQSPDA 259
N + ++Y+ +L V++ L + F G + S V +D+ + S + +VNFQ P
Sbjct: 51 NATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPAD 110
Query: 260 AAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDD 319
A A++ T N +V + GR + + D A+ + N+++KNLD
Sbjct: 111 AERALD-----TMNFEVIH-GRPMRIMWSQRDPAAR----------RAGNGNIFIKNLDR 154
Query: 320 SINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKP 379
I+++ + + FS FG I SCKV D G SKG GF F A A+ ++NG ++ K
Sbjct: 155 VIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKK 214
Query: 380 LYVAVAQRKEERKARL 395
+YV Q + +R L
Sbjct: 215 VYVGKFQPRAQRMKEL 230
Score = 116 (45.9 bits), Expect = 5.1e-121, Sum P(2) = 5.1e-121
Identities = 20/54 (37%), Positives = 38/54 (70%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVH--ASKVTGMLLEMDQTEVLHLIESPEALKTK 609
P ++ ++LGE++Y L+E + P H A K+TGM+LE+D E++ +++ E ++K
Sbjct: 614 PQEQKQLLGERIYALIEKMFPNHKEAGKITGMMLEIDNAELIMMLQDAELFRSK 667
Score = 72 (30.4 bits), Expect = 8.6e-08, Sum P(3) = 8.6e-08
Identities = 17/79 (21%), Positives = 40/79 (50%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
SG +++V + +++++ +L +FS+ ++ S V D + G+ +V +++ A
Sbjct: 233 SGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPK-GFGFVAFADQDAA 291
Query: 83 ANAKEALNFMPINGKPIRI 101
A E LN + G ++
Sbjct: 292 GQAVEKLNDSILEGTDCKL 310
Score = 60 (26.2 bits), Expect = 7.5e-22, Sum P(3) = 7.5e-22
Identities = 35/125 (28%), Positives = 47/125 (37%)
Query: 376 GRKPLYVAVAQRKEERKARLQAQFAQIRAPGGMSPLASGI-PGYHHGAPRLGPQQLYYGQ 434
G++ +V + R Q Q AQIR P G + + Y ++ PQQ Q
Sbjct: 458 GQQGYFVPNPMNAQGRPG-FQPQSAQIRGPPGQRVFQNQMFMQYPFNQRQVYPQQ----Q 512
Query: 435 GTPGLMPPQAAG-YGFQQQVFPGLRPGGPNYIMPYHLQRQVHPGQRTGVRR---SGNTHQ 490
G P + YG + R GGP M RQ P R ++ G Q
Sbjct: 513 GRPPMRTNDGRPQYGMAPRPAGAPRVGGPGVQMGGAPIRQQGPAPRGAPQKPFYQGPPRQ 572
Query: 491 MQQPQ 495
QQPQ
Sbjct: 573 -QQPQ 576
Score = 59 (25.8 bits), Expect = 9.5e-22, Sum P(3) = 9.5e-22
Identities = 22/62 (35%), Positives = 27/62 (43%)
Query: 406 GGMSPLASGIPGYHHG-APRLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGPNY 464
GG G P G APR PQ+ +Y QG P PQ QQ PG + G +
Sbjct: 539 GGPGVQMGGAPIRQQGPAPRGAPQKPFY-QGPPRQQQPQQHSQQPAQQ--PGQQGQGQSG 595
Query: 465 IM 466
I+
Sbjct: 596 IV 597
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 1185 (422.2 bits), Expect = 2.0e-120, P = 2.0e-120
Identities = 263/596 (44%), Positives = 361/596 (60%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
SGY SLYVGDL +V E+ LY+ FS ++S+RVCRD + R SLGYAY+N+ P DA
Sbjct: 6 SGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 83 ANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTV 142
A + +NF + G+PIRIM+S RDP +RKSG GN+FIKNL+ SIDNKAL DTF+ FG +
Sbjct: 66 ERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNI 125
Query: 143 LSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQN 201
LSCKVA D +G S+G+GFV FE EAAQ AI +NGML+ND++V+VG F R+ER A+
Sbjct: 126 LSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELG 184
Query: 202 VSP-KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAA 260
+FTN+YV NL V ++ L+ +F FG + S VM+D+ G SRCFGFVNF+ + A
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEA 244
Query: 261 AAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDS 320
AV +NG + ++ Y GRAQKR ER+ +L+ +FEQ + R + +G NLY+KNLDDS
Sbjct: 245 QKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDS 304
Query: 321 INDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPL 380
I+D+KL++ FS +G ITS KVM + G SKG GF FS PEEAT+A+ EMNG+++G KPL
Sbjct: 305 IDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
Query: 381 YVAVAQRKEERKARLQAQFAQ-IRAPGGMS-PLASGI--PGYHH--GAPRLGPQQLYYGQ 434
YVA+AQRKEERKA L Q+ Q + +S PL P + P+ Q YYG
Sbjct: 364 YVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAMPQPPAQAAYYGC 423
Query: 435 GTPGLMPPQAAGYGFQQQVFPGLRPGGPNYIMPYHLQRQVHPGQRTGVRRSGNTHQMQQP 494
G P + P Q A Q P RP + + P + R+ P + VR++ P
Sbjct: 424 G-P-VTPTQPAPRWTSQP--P--RPSCASMVRPPVVPRRP-PAHISSVRQASTQVPRTVP 476
Query: 495 QFMRNSNQGIRYLDNARNGTDQSVVSMVPVPFEVSGMXXXXXXXXXXXXXXIXXXXXXXX 554
R +N G + + G ++P +
Sbjct: 477 HTQRVANIGTQTTGPSGVGCCTPGRPLLPCKCSSAAHSTYRVQEPAVHIPGQEPLTASML 536
Query: 555 XXXP-DDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTK 609
P ++ +M+GE+LYPL+ ++ A K+TGMLLE+D +E+L ++ESPE+L K
Sbjct: 537 AAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAK 592
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 1052 (375.4 bits), Expect = 2.2e-120, Sum P(2) = 2.2e-120
Identities = 224/462 (48%), Positives = 299/462 (64%)
Query: 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQD 81
PS Y SLYVGDL +V E+ LY+ FS ++S+R+CRD S YAYVN+ + +D
Sbjct: 6 PS-YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKD 64
Query: 82 AANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGT 141
A +A + +NF I GKP+RIM+S RDPS+RKSG GN+F+KNLD SI+NKAL DT +AFG
Sbjct: 65 AEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGN 124
Query: 142 VLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQ 200
+LSC V D NG SKGYGFV FE EAA+ AIK +NGML+N ++V+VG F R+ER A+
Sbjct: 125 ILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAEL 183
Query: 201 NVSPK-FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDA 259
K F NVY+ N E + DE LK +FG FG S VM D GKS+ FGFV+F+ +
Sbjct: 184 GARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 260 AAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDD 319
A AV+++NG N K YVGRAQK+ ER+ +L+ FEQ + R + + NLY+KNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 320 SINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKP 379
I+DE+L++ FS FGTITS KVM++ G SKG GF FS PEEAT+A+ EMNG+++ KP
Sbjct: 304 GIDDERLRKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 380 LYVAVAQRKEERKARLQAQFAQ----IRA-PGGMSP----LASGIPGYHHGAPRLGPQQL 430
LYVA+AQRKEER+A L ++ Q +RA P +P + +P + A P Q+
Sbjct: 363 LYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQNHAAYYPPSQI 422
Query: 431 YYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGPNYIMPYHLQR 472
+ +P A + FQ + +RPG P +P+ R
Sbjct: 423 ARLRPSPRWTAQGARPHPFQNKP-SAIRPGAPR--VPFSTMR 461
Score = 415 (151.1 bits), Expect = 4.2e-50, Sum P(2) = 4.2e-50
Identities = 98/299 (32%), Positives = 170/299 (56%)
Query: 107 DPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAID--SNGQSKGYGFVQFE 164
+PS ++++ +L + L + F+ G +LS ++ D ++G S Y +V F+
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSN-YAYVNFQ 60
Query: 165 NEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLK 224
+ + A++A+ +N +I K V + R + V N++V NL +++ ++ L
Sbjct: 61 HTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG----NIFVKNLDKSINNKALY 116
Query: 225 KIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQK 284
FG I S V+ D +G S+ +GFV+F++ +AA A++K+NG N + +VG+ +
Sbjct: 117 DTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKS 175
Query: 285 RAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD 344
R EREA+L A+ ++ N+Y+KN + ++DE+LK+LF +FG S KVM D
Sbjct: 176 RKEREAELGARAKEF----------PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 345 QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
+ G SKG GF +F E+A +A++EMNGK + K +YV AQ+K ER+ L+ F Q++
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
Score = 153 (58.9 bits), Expect = 2.2e-120, Sum P(2) = 2.2e-120
Identities = 26/52 (50%), Positives = 43/52 (82%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTK 609
P + +MLGE+L+PL++ + P A K+TGMLLE+D +E+L+++ESPE+L++K
Sbjct: 550 PQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSK 601
Score = 45 (20.9 bits), Expect = 9.5e-39, Sum P(2) = 9.5e-39
Identities = 30/140 (21%), Positives = 56/140 (40%)
Query: 404 APGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLR----- 458
A +P +P Y + A PQQ + P + Q A + Q+ R
Sbjct: 492 AAAAATPAVRTVPRYKYAAGVRNPQQ--HRNAQPQVTMQQLAVHVQGQETLTASRLASAP 549
Query: 459 PGGPNYIMP---YHLQRQVHP---GQRTG----VRRSGNTHQMQQPQFMRNS-NQGIRYL 507
P ++ + L + +HP G+ TG + S + ++ P+ +R+ ++ + L
Sbjct: 550 PQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVL 609
Query: 508 D--NARNGTDQSVVSMVPVP 525
A+ T ++V S VP
Sbjct: 610 QAHQAKEATQKAVNSATGVP 629
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 1081 (385.6 bits), Expect = 7.5e-120, Sum P(2) = 7.5e-120
Identities = 237/485 (48%), Positives = 313/485 (64%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
S Y SLYVGDL +VNES L++ FS V+S+RVCRD + R SLGYAYVN+ P DA
Sbjct: 27 SSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADA 86
Query: 83 ANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTV 142
A + +NF ++GKP+RIM+S RDP++R+SG GN+FIKNLD IDNK++ DTF+ FG +
Sbjct: 87 ERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNI 146
Query: 143 LSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQ-- 200
LSCKVAID +G SKGYGFV FE EEAAQNAI+ +NGML+ K+V+VG F R +R ++
Sbjct: 147 LSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELG 206
Query: 201 NVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAA 260
+ +FTNVYV N + E L+K+F FG ITS VM +GKS+ FGFV F +P+ A
Sbjct: 207 ETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMT-VEGKSKGFGFVAFANPEEA 265
Query: 261 AAAVEKLNGTT--NNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLD 318
AV+ L+ +T D +V RAQK++ER A+L+ K EQ + R +K +G NLY+KNLD
Sbjct: 266 ETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLD 325
Query: 319 DSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRK 378
++++D+ LK+ F +G ITS KVM D++G SKG GF F PEEAT A+ EMN KM+ K
Sbjct: 326 ETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSK 385
Query: 379 PLYVAVAQRKEERKARLQAQFAQIRAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPG 438
PLYVA+AQRKE+R+A+L +Q+ Q A M G Y+ P GP YY P
Sbjct: 386 PLYVAIAQRKEDRRAQLASQYMQRLASMRMHGNVPGAAMYNPTQP--GPG--YY-VANP- 439
Query: 439 LMPPQAAGYGFQQQVFPGLRPGGPNYIMPYHLQRQVHPGQRTGVRRSGNTHQMQQPQFMR 498
M Q G QQ V PG R G N Y +Q Q Q GV ++ +M +PQ +
Sbjct: 440 -MQQQRNFAGGQQMVRPGGRWGMQNQ---YPVQNQYMMAQGPGVYQN----RMGRPQNQQ 491
Query: 499 NSNQG 503
+G
Sbjct: 492 GGPRG 496
Score = 213 (80.0 bits), Expect = 2.9e-24, Sum P(3) = 2.9e-24
Identities = 61/199 (30%), Positives = 99/199 (49%)
Query: 199 QQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGK-SRCFGFVNFQSP 257
Q S ++YV +L V + L + F G + S V +D+ + S + +VNFQ P
Sbjct: 24 QTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQP 83
Query: 258 DAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGA-NLYLKN 316
A A++ +N + K + +Q R+ +R GA N+++KN
Sbjct: 84 ADAERAMDTMNFEALHGKPMRIMWSQ----RDPAMRRS-------------GAGNIFIKN 126
Query: 317 LDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIG 376
LD I+++ + + FS FG I SCKV +D+ GFSKG GF F E A A+ ++NG ++
Sbjct: 127 LDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLA 186
Query: 377 RKPLYVAVAQRKEERKARL 395
K ++V Q + +R L
Sbjct: 187 GKKVFVGKFQPRAQRNREL 205
Score = 119 (46.9 bits), Expect = 7.5e-120, Sum P(2) = 7.5e-120
Identities = 20/54 (37%), Positives = 39/54 (72%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVH--ASKVTGMLLEMDQTEVLHLIESPEALKTK 609
P ++ ++LGE++Y L+E + P H A K+TGM+LE+D +E++ +++ E ++K
Sbjct: 579 PQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSK 632
Score = 68 (29.0 bits), Expect = 2.9e-24, Sum P(3) = 2.9e-24
Identities = 34/106 (32%), Positives = 44/106 (41%)
Query: 395 LQAQFAQIRAPGGMSPLASGIPGYHHGAPRLGPQQLY--YGQGTPGLM-PPQAAGYGFQQ 451
+Q Q+ + PG + G P G PR GP Q Y QG + PP+ G QQ
Sbjct: 467 VQNQYMMAQGPG-VYQNRMGRPQNQQGGPR-GPPQQYNQVAQGGVRMQGPPRTQNPGVQQ 524
Query: 452 QVFPGLRPGGPNYIMPYHLQRQVHPGQRTGVRRSGNTHQ--MQQPQ 495
Q P RP P Q+Q P TG + +Q Q+PQ
Sbjct: 525 QNVP--RP--PQQ------QQQQRPAP-TGPKAPPQPYQAYQQRPQ 559
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 1175 (418.7 bits), Expect = 2.3e-119, P = 2.3e-119
Identities = 268/613 (43%), Positives = 369/613 (60%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
+GY SLY+GDL +V E+ LY+ FS ++S+RVCRD + R SL YAY+N+ P DA
Sbjct: 6 AGYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADA 65
Query: 83 ANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTV 142
A + +NF I G+PIRIM+S RDP +RKSG GNVFIKNLD SIDNKAL DTF+AFG +
Sbjct: 66 ERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNI 125
Query: 143 LSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNV 202
LSCKV D +G S+GYGFV FE EAA AI+ +NGML+ND++V+VG F R+ER +
Sbjct: 126 LSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYG 184
Query: 203 SP--KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAA 260
+ +FTNVY+ N E + D+ L++IF FG S VM D G+SR FGFVN+ + + A
Sbjct: 185 AKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEA 244
Query: 261 AAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQ---ERISRYEKLKGANLYLKNL 317
AV ++NG N ++ YVGRAQKR ER+++L+ KFEQ ERI+RY+ G NLY+KNL
Sbjct: 245 QKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQ---GVNLYVKNL 301
Query: 318 DDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGR 377
DD I+D++L++ F +GTITS KVM + G SKG GF FS PEEAT+A+ EMNG+++
Sbjct: 302 DDGIDDDRLRKEFLPYGTITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 378 KPLYVAVAQRKEERKARLQAQFAQ----IRA-PGGMSPLASGIPGYHHGAPRLGPQQLYY 432
KPLYVA+AQRKEERKA L Q+ Q +RA PG + Y A P + +Y
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLSAMPQPPNRTFY 420
Query: 433 GQGTPGLMPPQAAGYGFQQQVFPGLRPGGPNYIMPYHLQRQVHPGQRTGVRRSGNTHQMQ 492
+ P A + Q RP P Y P L R V P + + + Q
Sbjct: 421 SPNPVAPVRP-APQWASHQS-----RP--PQYQPPTPLMRAVQPRRMSSNISTMKQASTQ 472
Query: 493 QPQFMRNS----NQGIRYLDNARNGTDQSVVSMVPVPFEVS-GMXXXXXXXXXXXXXXIX 547
P+ ++S N G + AR + S++ +P ++ S G+ +
Sbjct: 473 VPRVAQHSQRVANIGTQTA-GARAQVNPSMMRTMP-HYKYSCGVRNVQPIVSSTHLQQVM 530
Query: 548 X-----------XXXXXXXXXPDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEV 596
P ++ +MLGE++YP++ + P A K+TGMLLE+D +E+
Sbjct: 531 EPAVLMQGQEPLTASLLAGAPPQEQKQMLGERIYPVIHEMHPTLAGKITGMLLEIDNSEL 590
Query: 597 LHLIESPEALKTK 609
LH++ESPE+L +K
Sbjct: 591 LHMLESPESLHSK 603
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 1171 (417.3 bits), Expect = 6.0e-119, P = 6.0e-119
Identities = 271/610 (44%), Positives = 374/610 (61%)
Query: 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAAN 84
Y SLY+GDL +V E+ LY+ FS ++S+RVCRD + R SLGYAY+N+ P DA
Sbjct: 8 YPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAER 67
Query: 85 AKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS 144
A + +NF I G+PIRIM+S RDP +RKSG GNVFIKNLD SIDNKAL DTF+AFG +LS
Sbjct: 68 ALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILS 127
Query: 145 CKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSP 204
CKV D G S+GYGFV FE +EAA AI+ +NGML+ND++V+VG F R+ER + +
Sbjct: 128 CKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAK 186
Query: 205 --KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAA 262
+FTNVY+ N E + D+ LK+IF FG S VM D+ G+SR FGFVN+ + + A
Sbjct: 187 VMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQK 246
Query: 263 AVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQ---ERISRYEKLKGANLYLKNLDD 319
AV ++NG N ++ YVGRAQKR ER+ +L+ KFEQ ERI+RY+ G NLY+KNLDD
Sbjct: 247 AVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQ---GVNLYVKNLDD 303
Query: 320 SINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKP 379
I+D++L++ FS +GTITS KVM + G SKG GF FS PEEAT+A+ EMNG+++ KP
Sbjct: 304 GIDDDRLRKEFSPYGTITSTKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKP 362
Query: 380 LYVAVAQRKEERKARLQAQFAQ----IRA-PGGMSPLASGIPGYHHGAPRLGPQQLYYGQ 434
LYVA+AQRKEERKA L Q+ Q +RA PG + L S ++ P + PQ
Sbjct: 363 LYVALAQRKEERKAILTNQYMQRLATMRAMPGPL--LGSFQQPANYFLPTM-PQPSNRAF 419
Query: 435 GTPGLMPP--QAAGYGFQQQVFPGLRPGGPNYIMPYHLQRQVHPGQRTGVRRSGNTHQMQ 492
+P + P A + Q P +P P +M R++H T + +T +
Sbjct: 420 YSPNPVAPVRPAPQWASHQSRPPQYQPPAP--LMRAVPPRRMHSNIST--MKQASTQVPR 475
Query: 493 QP-QFMRNSNQGIRYLDNARNGTDQSVVSMVPVPFEVS-GMXXXXXXXXXXXXXXIXXXX 550
P Q R +N G + AR + S++ +P ++ S G+ +
Sbjct: 476 VPLQSQRVANIGTQTA-GARAQVNASIMRAMP-HYKYSCGVRNVQPIGSSAHLQQVLEPA 533
Query: 551 XXXXXXXP-----------DDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHL 599
P ++ ++LGE++YPL+ + P A K+TGMLLE+D +E+LH+
Sbjct: 534 VLMQGQEPLTASLLAAAPLQEQKQILGERIYPLIHEMHPTLAGKITGMLLEIDNSELLHM 593
Query: 600 IESPEALKTK 609
+ESPE+L +K
Sbjct: 594 LESPESLHSK 603
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 1170 (416.9 bits), Expect = 7.7e-119, P = 7.7e-119
Identities = 270/608 (44%), Positives = 366/608 (60%)
Query: 24 GYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAA 83
GY SLYVGDL +V E+ LY+ FS ++S+RVCRD + R SLGYAY+N+ P DA
Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAE 66
Query: 84 NAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVL 143
A + +NF I G+P+RIM+S RDP +RKSG GNVFIKNLD SIDNKAL DTF+AFG +L
Sbjct: 67 RALDTMNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNIL 126
Query: 144 SCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQNV 202
SCKV D NG S+G+GFV FE +EAA AI+ +NGML+ND++V+VG F R+ER A+
Sbjct: 127 SCKVVCDENG-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRKEREAEFGA 185
Query: 203 -SPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAA 261
+ +FTNVY+ N + + D L++IF FG S VM D G+S+ FGFVNF+ + A
Sbjct: 186 RAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQ 245
Query: 262 AAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQ---ERISRYEKLKGANLYLKNLD 318
AV +NG N ++ YVGRAQKR ER+++L+ KFEQ ER+SRY+ G NLY+KNLD
Sbjct: 246 KAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQ---GVNLYVKNLD 302
Query: 319 DSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRK 378
D I+DE+L++ FS +GTITS KVM + G SKG GF FS PEEAT+A+ EMNG+++ K
Sbjct: 303 DGIDDERLRKEFSPYGTITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTK 361
Query: 379 PLYVAVAQRKEERKARLQAQFAQ----IRA-PGGMSPLASGIPGYH-HGAPRLGPQQLYY 432
PLYVA+AQRKEERKA L Q+ Q +RA PG PGY P+ + +Y
Sbjct: 362 PLYVALAQRKEERKAILTNQYMQRLATMRALPGPFLGSFQPPPGYFLPPIPQPQTRAAFY 421
Query: 433 GQGTPGLMPPQAAGYGFQQQVFPGLRPGGPNYIMPYHLQRQVHPGQRTGVRRSGNTHQMQ 492
+P ++P + A Q P P + R++ T +R++
Sbjct: 422 SP-SP-VVPVRPATRWSAQPTRPPPYPAATPILRAAVQPRRLLSNIST-MRQASTQVPRV 478
Query: 493 QPQFMRNSNQGIRYLDNAR-------NGTDQSVVSMVPVPFEVSGMXXXXXXXXXXXXXX 545
PQ R +N G + + +AR G Q S+ + G
Sbjct: 479 PPQAQRVANIGTQTI-SARVPSSPTLRGAPQYKYSLAVRNIQPMGSVPPGAQQVGEPAVH 537
Query: 546 IXX----XXXXXXXXXPDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIE 601
I P ++ +M+GE+LYPL+ + A K+TGMLLE+D +E+L L+E
Sbjct: 538 IQGQEPLTASMLAAAPPQEQKQMIGERLYPLIHAMHASLAGKITGMLLEIDNSELLLLLE 597
Query: 602 SPEALKTK 609
SPE+L +K
Sbjct: 598 SPESLHSK 605
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 1083 (386.3 bits), Expect = 2.2e-118, Sum P(2) = 2.2e-118
Identities = 233/488 (47%), Positives = 312/488 (63%)
Query: 22 PSGYG--NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNP 79
PSG + SLYVG+L+ +V E+ L++LF+ + V S+RVCRD R SLGYAYVN+ N
Sbjct: 72 PSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNM 131
Query: 80 QDAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAF 139
+D A + LN+ I G+P RIM+S RDPS+RK G GNVFIKNLD +IDNKAL DTF+AF
Sbjct: 132 EDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAF 191
Query: 140 GTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQ 199
G +LSCKVA+D G +KGYGFV F++ E+A AI+ +NGML+NDK+VYVG V R+ER
Sbjct: 192 GKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQS 251
Query: 200 --QNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSP 257
+ + FTNVY+ NL +T+++ +FG FG ITS ++KD + K R FGFVN+ +
Sbjct: 252 KVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANH 311
Query: 258 DAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNL 317
+ A AV++LN K YVGRAQK+ ERE +LR ++EQ ++ + K +G NL++KNL
Sbjct: 312 ECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNL 371
Query: 318 DDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGR 377
D ++DE+LK FS FGTITS K+M D+ G SKG GF ++ PEEA +A+ EMN +M+
Sbjct: 372 QDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAG 431
Query: 378 KPLYVAVAQRKEERKARLQAQFA---QIRAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQ 434
KPLYVA+AQRKE R+++L+AQ Q R ++ A+GIP +GA GP L YG
Sbjct: 432 KPLYVALAQRKEVRRSQLEAQIQARNQFRLQQQVAA-AAGIPAVQYGAT--GP--LIYG- 485
Query: 435 GTPGLMPPQAAGYGFQQQVFPGLRPGGPNYI-MPYHLQRQ-VHPGQRTGVRRSGNTHQMQ 492
PG P AA G + PG P Y MP PG G+ G
Sbjct: 486 --PGGYPIPAAVNGRGMPMVPGHNGPMPMYPGMPTQFPAGGPAPGY-PGMNARGPVPAQG 542
Query: 493 QPQFMRNS 500
+P M S
Sbjct: 543 RPMMMPGS 550
Score = 103 (41.3 bits), Expect = 2.2e-118, Sum P(2) = 2.2e-118
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 559 DDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTK 609
+ R ++LGE LYP V E + K+TGMLLEM +E+L L+E AL +
Sbjct: 583 ESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLELLEDDSALNER 633
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 1066 (380.3 bits), Expect = 2.9e-118, Sum P(2) = 2.9e-118
Identities = 213/420 (50%), Positives = 290/420 (69%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
SLYVGDL +V E+ LY++FS + ++S+RVCRD + R SLGYAY+N+ P DA A +
Sbjct: 12 SLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
+NF I G+PIRIM+SHRDP +R+SG GN+FIKNL+ SIDNKAL DTF+ FG++LS KV
Sbjct: 72 MNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVV 131
Query: 149 IDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQNVSPK-F 206
+ +G S+G+GFV FE EAAQ AI +NGML+ND++V+VG F RQ+R A+ F
Sbjct: 132 YNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALGF 190
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEK 266
TN+YV NL + ++ L+ +F FG S VM+DS+G+SR FGF+NF+ + A AV+
Sbjct: 191 TNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDH 250
Query: 267 LNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKL 326
+NG + ++ YVGRAQKRAER+ +L+ +FEQ + R + +G NLY+KNLDDSIND++L
Sbjct: 251 MNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRL 310
Query: 327 KELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386
KE+FS +G ITS KVM + SKG GF FS PEEAT+A+ EMNG+++G KPLYVA+AQ
Sbjct: 311 KEVFSTYGVITSAKVMTES-SHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 387 RKEERKARLQAQFAQIRAPGGMS----PLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPP 442
RKEERKA L Q+ + + +S P + +P H Q +YY + M P
Sbjct: 370 RKEERKAILTNQYRRRLSRSVLSSFQQPTSYLLPAVHQSTT----QTMYYSSASIAPMQP 425
Score = 435 (158.2 bits), Expect = 9.9e-52, Sum P(2) = 9.9e-52
Identities = 104/300 (34%), Positives = 168/300 (56%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
SG GN+ ++ +LE +++ LYD FS ++S +V ++ S G+ +V++ + A
Sbjct: 96 SGMGNI--FIKNLENSIDNKALYDTFSTFGSILSSKVVYNE--HGSRGFGFVHFETHEAA 151
Query: 83 ANAKEALNFMPINGKPIRIMY----SHRDPSI--RKSGYGNVFIKNLDTSIDNKALCDTF 136
A +N M +N + + + + R+ + R G+ N+++KNL +D + L D F
Sbjct: 152 QKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLF 211
Query: 137 AAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQE 196
+ FG S KV DSNGQS+G+GF+ FE E AQ A+ +NG ++ + +YVG +R E
Sbjct: 212 SQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAE 271
Query: 197 RAQQNVSPKF-------------TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSD 243
R Q + +F N+YV NL +++ D+ LK++F +G ITSA VM +S
Sbjct: 272 R-QNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMTESS 330
Query: 244 GKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISR 303
S+ FGFV F SP+ A AV ++NG K YV AQ++ ER+A L ++ + R+SR
Sbjct: 331 -HSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRR-RLSR 388
Score = 248 (92.4 bits), Expect = 1.4e-25, Sum P(2) = 1.4e-25
Identities = 66/209 (31%), Positives = 113/209 (54%)
Query: 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANA 85
G ++YV +L +++E L DLFSQ + SV+V RD S S G+ ++N+ ++A A
Sbjct: 189 GFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRD-SNGQSRGFGFINFEKHEEAQKA 247
Query: 86 KEALNFMPINGKPIRI----MYSHRDPSI----------RKSGY-G-NVFIKNLDTSIDN 129
+ +N ++G+ + + + R + R++ Y G N+++KNLD SI++
Sbjct: 248 VDHMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSIND 307
Query: 130 KALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVG 189
L + F+ +G + S KV +S+ SKG+GFV F + E A A+ +NG ++ K +YV
Sbjct: 308 DRLKEVFSTYGVITSAKVMTESS-HSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 366
Query: 190 LFVRRQERAQQNVSPKFTNVYVNNLAETV 218
L R++ER TN Y L+ +V
Sbjct: 367 LAQRKEER-----KAILTNQYRRRLSRSV 390
Score = 215 (80.7 bits), Expect = 7.4e-22, Sum P(2) = 7.4e-22
Identities = 59/193 (30%), Positives = 107/193 (55%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVE 265
+++YV +L VT+ L ++F GTI S V +D + +S + ++NFQ P A A++
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 266 KLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEK 325
T N + + + Q +R + R + N+++KNL++SI+++
Sbjct: 71 ----TMNFEMI----KGQP-------IRIMWSH-RDPGLRRSGMGNIFIKNLENSIDNKA 114
Query: 326 LKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385
L + FS FG+I S KV+ ++HG S+G GF F E A +A+N MNG ++ + ++V
Sbjct: 115 LYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHF 173
Query: 386 QRKEERKARLQAQ 398
+ +++R+A L A+
Sbjct: 174 KSRQKREAELGAR 186
Score = 127 (49.8 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 29/103 (28%), Positives = 56/103 (54%)
Query: 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAAN 84
Y V+LYV +L+ ++N+ +L ++FS + S +V + S S G+ +V +S+P++A
Sbjct: 291 YQGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMTESSH--SKGFGFVCFSSPEEATK 348
Query: 85 AKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSI 127
A +N + KP+ + + R RK+ N + + L S+
Sbjct: 349 AVTEMNGRIVGTKPLYVALAQRKEE-RKAILTNQYRRRLSRSV 390
Score = 119 (46.9 bits), Expect = 2.9e-118, Sum P(2) = 2.9e-118
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 560 DRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTK 609
++ +M+GE+LY L+ + K+TGMLLEMD E+L L+ESPE+L K
Sbjct: 538 EQKQMIGERLYSLIHDACAPLTGKITGMLLEMDNLELLLLLESPESLHAK 587
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 1013 (361.7 bits), Expect = 3.1e-118, Sum P(3) = 3.1e-118
Identities = 210/401 (52%), Positives = 275/401 (68%)
Query: 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQD 81
PS Y SLYVGDL +V E+ LY+ FS ++S+RV RD++ R SLGYA VN+ +D
Sbjct: 6 PS-YSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLED 64
Query: 82 AANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGT 141
A A + +NF I GKP+RIM+S RDPS+RKSG GN+F+KNLD SID+K L DTF+AFG
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGN 124
Query: 142 VLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQ 200
+LSCKV D NG SKGYGFV FE +E A+ AI+ +NGM +ND++V+VG F R++R A+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAEL 183
Query: 201 NVSPK-FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDA 259
K FTNVY+ NL E + DE L+ +F FG S VM D GKS+ FGFV+F+ +
Sbjct: 184 GARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 260 AAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQ--------ERI--SRYEKLKG 309
A AV+++NG N K YVGRAQK+ ER+ +L+ KF Q E++ R + +G
Sbjct: 244 ARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKPKIEQVPQDRSVRCQG 303
Query: 310 ANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNE 369
NLY+KNLDD I+DE+L++ FS FGTITS KV ++ G SKG GF FS PEEAT+A+ E
Sbjct: 304 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEG-GRSKGFGFVCFSSPEEATKAVTE 362
Query: 370 MNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRAPGGMSP 410
MNG+++ KPLYVA+AQRKEER+A L Q+ Q A P
Sbjct: 363 MNGRIVATKPLYVALAQRKEERQAHLSNQYMQRMASTSAVP 403
Score = 431 (156.8 bits), Expect = 2.0e-56, Sum P(3) = 2.0e-56
Identities = 102/298 (34%), Positives = 168/298 (56%)
Query: 107 DPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFVQFEN 165
+PS ++++ +L + L + F+ G +LS +V D + +S GY V F+
Sbjct: 2 NPSDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQ 61
Query: 166 EEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKK 225
E A+ A+ +N +I K V + R + V N++V NL ++ + L
Sbjct: 62 LEDAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG----NIFVKNLDRSIDSKTLYD 117
Query: 226 IFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKR 285
F FG I S V+ D +G S+ +GFV+F++ + A A+EK+NG ND+ +VGR + R
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSR 176
Query: 286 AEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ 345
+R+A+L A+ ++ N+Y+KNL + ++DE+L++LFS FG S KVM D+
Sbjct: 177 RDRQAELGARAKEF----------TNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDE 226
Query: 346 HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
G SKG GF +F E+A +A++EMNGK + K +YV AQ+K ER+ L+ +F Q++
Sbjct: 227 SGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMK 284
Score = 139 (54.0 bits), Expect = 3.1e-118, Sum P(3) = 3.1e-118
Identities = 26/52 (50%), Positives = 37/52 (71%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTK 609
P + +MLGE L+ L++ + P A K+TGMLLE+D E+ H++ESPE L TK
Sbjct: 562 PQAQKQMLGEWLFSLIQAMHPALAGKITGMLLEIDNLELRHMLESPECLHTK 613
Score = 47 (21.6 bits), Expect = 3.1e-118, Sum P(3) = 3.1e-118
Identities = 15/51 (29%), Positives = 19/51 (37%)
Query: 455 PGLRPGGPNYIMPYHLQRQVHPGQRTGVRRSGNTHQMQQPQFMRNSNQGIR 505
PG+ P P + + P Q G + N Q P R S QG R
Sbjct: 405 PGINPFQPAQGLSGYFMTATAPTQNRGTYYAPNQTTQQGPS-ARGSAQGTR 454
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 1028 (366.9 bits), Expect = 2.6e-117, Sum P(2) = 2.6e-117
Identities = 207/375 (55%), Positives = 268/375 (71%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
SLYVGDL +V E+ LY+ FS ++S+RV RD R SLGYA VN+ P DA A +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
+NF I GKP+RIM+S RDPS+R+SG GNVFIKNL+ +IDNKAL DTF+AFG +LSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVV 131
Query: 149 IDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQNVSPK-F 206
D NG SKG+GFV FE EEAA+ AI+ +NGML+ND++V+VG F R+ER A+ K F
Sbjct: 132 CDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGTRTKEF 190
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEK 266
TNVY+ N + + D+ L +FG FG + S VM D GKS+ FGFV+F+ + A AV++
Sbjct: 191 TNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDE 250
Query: 267 LNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKL 326
+NG N K YVG AQK+ +R +L+ KFEQ R + +G NLY+KNLDD I+DE+L
Sbjct: 251 MNGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDDERL 310
Query: 327 KELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386
++ FS FGTITS KVM + G SKG GF FS PEEAT+A++EMNG+++ KPLYVA+AQ
Sbjct: 311 QKEFSPFGTITSTKVMTEG-GRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQ 369
Query: 387 RKEERKARLQAQFAQ 401
RKEER+A L Q+ Q
Sbjct: 370 RKEERQAHLTNQYIQ 384
Score = 413 (150.4 bits), Expect = 3.3e-49, Sum P(2) = 3.3e-49
Identities = 100/293 (34%), Positives = 161/293 (54%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
++++ +L + L + F++ G +LS +V D +S GY V FE A+ A+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITS 235
+N +I K V + R + V NV++ NL +T+ ++ L F FG I S
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRRSGVG----NVFIKNLNKTIDNKALYDTFSAFGNILS 127
Query: 236 AIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAK 295
V+ D +G S+ GFV+F++ +AA A+EK+NG ND+ +VG+ + R EREA+L +
Sbjct: 128 CKVVCDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGTR 186
Query: 296 FEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFA 355
++ N+Y+KN D ++D+ L LF FG + S KVM D+ G SKG GF
Sbjct: 187 TKEF----------TNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFV 236
Query: 356 AFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRAPGGM 408
+F E+A +A++EMNGK + K +YV AQ+K +R L+ +F Q+ G+
Sbjct: 237 SFERHEDAQKAVDEMNGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGI 289
Score = 395 (144.1 bits), Expect = 2.1e-46, Sum P(2) = 2.1e-46
Identities = 104/297 (35%), Positives = 155/297 (52%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
SG GNV ++ +L + ++ LYD FS ++S +V D++ G+ + +
Sbjct: 96 SGVGNV--FIKNLNKTIDNKALYDTFSAFGNILSCKVVCDENGSKGHGFVHFETEEAAER 153
Query: 83 ANAKE---ALNFMPINGKPIRIMYSHRDPSI--RKSGYGNVFIKNLDTSIDNKALCDTFA 137
A K LN + + R+ + R + NV+IKN +D+K L F
Sbjct: 154 AIEKMNGMLLNDRKVFVGQFKSR-KEREAELGTRTKEFTNVYIKNFGDRMDDKTLNGLFG 212
Query: 138 AFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVG-------- 189
FG VLS KV D G+SKG+GFV FE E AQ A+ +NG +N K +YVG
Sbjct: 213 RFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQKKVDR 272
Query: 190 -LFVRRQ-ERAQQNVSPKFT--NVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGK 245
+ ++R+ E+ Q+ ++ N+YV NL + + DE L+K F FGTITS VM + G+
Sbjct: 273 HIELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEG-GR 331
Query: 246 SRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERIS 302
S+ FGFV F SP+ A AV ++NG K YV AQ++ ER+A L ++ Q S
Sbjct: 332 SKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQRKEERQAHLTNQYIQRMAS 388
Score = 148 (57.2 bits), Expect = 2.6e-117, Sum P(2) = 2.6e-117
Identities = 25/49 (51%), Positives = 40/49 (81%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEAL 606
P ++ +MLGE+L+PL++ + P A K+TGMLLE+D +E LH+++SPE+L
Sbjct: 549 PQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSEPLHMLDSPESL 597
Score = 98 (39.6 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 310 ANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAA--FSMPEEATRAL 367
A+LY+ +L + + L E FS G I S +V D + G+A+ F P +A RAL
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVIT-RRSLGYASVNFEQPADAERAL 69
Query: 368 NEMNGKMIGRKPLYVAVAQR 387
+ MN +I KP+ + +QR
Sbjct: 70 DTMNFDVIKGKPVRIMWSQR 89
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 1007 (359.5 bits), Expect = 1.4e-116, Sum P(2) = 1.4e-116
Identities = 218/413 (52%), Positives = 277/413 (67%)
Query: 66 RSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDT 125
R SLGYAYVN+ P DA A + +NF I GKP+RIM+S RDPS+RKSG GN+FIKNLD
Sbjct: 4 RRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDK 63
Query: 126 SIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQ 185
SIDNKAL DTF+AFG +LSCKV D NG SKGYGFV FE +EAA+ AI+ +NGML+ND++
Sbjct: 64 SIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 122
Query: 186 VYVGLFVRRQER-AQQNVSPK-FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSD 243
V+VG F R+ER A+ K FTNVY+ N E + DE LK +FG FG S VM D
Sbjct: 123 VFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES 182
Query: 244 GKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISR 303
GKS+ FGFV+F+ + A AV+++NG N K YVGRAQK+ ER+ +L+ KFEQ + R
Sbjct: 183 GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDR 242
Query: 304 YEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEA 363
+ +G NLY+KNLDD I+DE+L++ FS FGTITS KVM++ G SKG GF FS PEEA
Sbjct: 243 ITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEA 301
Query: 364 TRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQ----IRA-PGGM-SPLASGIP- 416
T+A+ EMNG+++ KPLYVA+AQRKEER+A L Q+ Q +RA P + +P P
Sbjct: 302 TKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPS 361
Query: 417 GYHHGA-PRLGPQQLYYGQGTPG-LMP-PQAAGYGFQQQVF---PG-LRPGGP 462
GY A P+ + YY L P P+ G + F PG +RP P
Sbjct: 362 GYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAP 414
Score = 456 (165.6 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 111/299 (37%), Positives = 166/299 (55%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
SG GN+ ++ +L+++++ LYD FS ++S +V D++ S GY +V++ + A
Sbjct: 51 SGVGNI--FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAA 106
Query: 83 ANAKEALNFMPINGKPIRI----MYSHRDPSI--RKSGYGNVFIKNLDTSIDNKALCDTF 136
A E +N M +N + + + R+ + R + NV+IKN +D++ L D F
Sbjct: 107 ERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF 166
Query: 137 AAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQE 196
FG LS KV D +G+SKG+GFV FE E AQ A+ +NG +N KQ+YVG ++ E
Sbjct: 167 GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 226
Query: 197 RAQQNVSPKF-------------TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSD 243
R Q + KF N+YV NL + + DE L+K F FGTITSA VM +
Sbjct: 227 R-QTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG- 284
Query: 244 GKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERIS 302
G+S+ FGFV F SP+ A AV ++NG K YV AQ++ ER+A L ++ Q S
Sbjct: 285 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMAS 343
Score = 162 (62.1 bits), Expect = 1.4e-116, Sum P(2) = 1.4e-116
Identities = 27/52 (51%), Positives = 44/52 (84%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTK 609
P ++ +MLGE+L+PL++ + P A K+TGMLLE+D +E+LH++ESPE+L++K
Sbjct: 510 PQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSK 561
Score = 48 (22.0 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
Identities = 29/139 (20%), Positives = 52/139 (37%)
Query: 404 APGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGPN 463
A +P +P Y + A PQQ Q + P G Q+ + + P
Sbjct: 452 AAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQG-QEPLTASMLASAPP 510
Query: 464 YIMP-------YHLQRQVHP---GQRTG----VRRSGNTHQMQQPQFMRNS-NQGIRYLD 508
+ L + +HP G+ TG + S H ++ P+ +R+ ++ + L
Sbjct: 511 QEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 570
Query: 509 --NARNGTDQSVVSMVPVP 525
A+ ++V S VP
Sbjct: 571 AHQAKEAAQKAVNSATGVP 589
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 1069 (381.4 bits), Expect = 4.7e-116, Sum P(2) = 4.7e-116
Identities = 234/493 (47%), Positives = 320/493 (64%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ SLYVG+L +VNE+ L+++FS + QV S+RVCRD + SLGYAYVNY +D A
Sbjct: 51 SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAI 110
Query: 87 EALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCK 146
E LN+ PI G+P RIM+S RDPS R+SG GN+FIKNL +IDNKAL DTF+AFG +LSCK
Sbjct: 111 EELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCK 170
Query: 147 VAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQ--QNVSP 204
VA D GQSK +GFV +E EAA+ AI+ +NGML+ND++V+VG + +++R + +
Sbjct: 171 VATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKA 230
Query: 205 KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAV 264
FTN+YV N+ ++E +K+F FG ITS + KD DGKS+ FGFVNF+ ++A AV
Sbjct: 231 NFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAV 290
Query: 265 EKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDE 324
E+LN N + YVGRAQK+ ER +L+ ++E R+ + K +G NL++KNLDD+I+ E
Sbjct: 291 EELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSE 350
Query: 325 KLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384
KL+E F FGTITS KVMVD+ G SKG GF F+ PEEAT+A+ EMN +MI KPLYVA+
Sbjct: 351 KLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVAL 410
Query: 385 AQRKEERKARLQAQFAQIRAPGGM-SPLASGIPGYHHGAPRLGPQQLYY---GQGT---P 437
AQRK+ R+++L+ Q Q R M + A G+PG P QQ ++ G+G P
Sbjct: 411 AQRKDVRRSQLEQQI-QARNQMRMQNAAAGGLPGQFI-PPMFYGQQGFFPPNGRGNAPYP 468
Query: 438 GLMPP---QAAGYGFQQQVFPGLRPGG---PNYIMPYHLQRQVHPGQRTGVRRSGNTHQM 491
G P + G F +Q +P P G P Y +P Q+ + GQ ++ Q
Sbjct: 469 GPNPQMMMRGRGQPFPEQ-WPRPGPNGQPVPVYGIPPQFQQDFN-GQNMRPQQQ----QQ 522
Query: 492 QQPQ--FMRNSNQ 502
QQP+ + N NQ
Sbjct: 523 QQPRGGYYPNRNQ 535
Score = 249 (92.7 bits), Expect = 4.1e-23, Sum P(2) = 4.1e-23
Identities = 57/200 (28%), Positives = 113/200 (56%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
SG GN+ ++ +L ++ L+D FS +++S +V D+ +S + +V+Y + A
Sbjct: 137 SGDGNI--FIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKC-FGFVHYETAEAA 193
Query: 83 ANAKEALNFMPINGKPIRI--MYSHRDPSIR----KSGYGNVFIKNLDTSIDNKALCDTF 136
A E +N M +N + + + S +D + K+ + N+++KN+D + ++ F
Sbjct: 194 EAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLF 253
Query: 137 AAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQE 196
+ FG + S + D +G+SKG+GFV FE+ E+A A++ LN IN +++YVG +++E
Sbjct: 254 SPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRE 313
Query: 197 RAQQNVSPKFTNVYVNNLAE 216
R ++ + ++ V + LA+
Sbjct: 314 RLEE-LKKQYEAVRLEKLAK 332
Score = 193 (73.0 bits), Expect = 7.5e-17, Sum P(2) = 7.5e-17
Identities = 59/213 (27%), Positives = 104/213 (48%)
Query: 195 QERAQQN-VSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFV 252
+E+ + + V+ ++YV L +V + L +IF G ++S V +D+ KS + +V
Sbjct: 39 EEQGESSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYV 98
Query: 253 NFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANL 312
N+ + A+E+LN GR R + Q S G N+
Sbjct: 99 NYHKYEDGEKAIEELNYNPIE------GRP---------CRIMWSQRDPSARRSGDG-NI 142
Query: 313 YLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG 372
++KNL +I+++ L + FS FG I SCKV D+ G SK GF + E A A+ +NG
Sbjct: 143 FIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNG 202
Query: 373 KMIGRKPLYVAVAQRKEERKAR---LQAQFAQI 402
++ + ++V K++R+++ ++A F I
Sbjct: 203 MLLNDREVFVGKHISKKDRESKFEEMKANFTNI 235
Score = 121 (47.7 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 25/89 (28%), Positives = 50/89 (56%)
Query: 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAAN 84
Y V+L+V +L+ ++ +L + F + S +V D++ +S G+ +V ++ P++A
Sbjct: 333 YQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSK-GFGFVCFTTPEEATK 391
Query: 85 AKEALNFMPINGKPIRIMYSHRDPSIRKS 113
A +N INGKP+ + + R +R+S
Sbjct: 392 AITEMNTRMINGKPLYVALAQRK-DVRRS 419
Score = 95 (38.5 bits), Expect = 4.7e-116, Sum P(2) = 4.7e-116
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 559 DDRTRMLGEQLYPLV----ENIEPVHASKVTGMLLEMDQTEVLHLIESPE 604
D + R+LGE+LYP + + EP A K+TGM+L ++ E+L L++ E
Sbjct: 551 DQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLGLENQEILDLLDDDE 600
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 707 (253.9 bits), Expect = 4.0e-112, Sum P(3) = 4.0e-112
Identities = 162/332 (48%), Positives = 212/332 (63%)
Query: 147 VAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQNVSPK 205
V D NG SKGYGFV FE +EAA+ AI+ +NGML+ND++V+VG F R+ER A+ K
Sbjct: 98 VVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK 156
Query: 206 -FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAV 264
FTNVY+ N E + DE LK +FG FG S VM D GKS+ FGFV+F+ + A AV
Sbjct: 157 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 216
Query: 265 EKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDE 324
+++NG N K YVGRAQK+ ER+ +L+ KFEQ + R + +G NLY+KNLDD I+DE
Sbjct: 217 DEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDE 276
Query: 325 KLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384
+L++ FS FGTITS KVM++ G SKG GF FS PEEAT+A+ EMNG+++ KPLYVA+
Sbjct: 277 RLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 335
Query: 385 AQRKEERKARLQAQFAQ----IRA-PGGM-SPLASGIP-GYHHGA-PRLGPQQLYYGQGT 436
AQRKEER+A L Q+ Q +RA P + +P P GY A P+ + YY
Sbjct: 336 AQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQ 395
Query: 437 PG-LMP-PQAAGYGFQQQVF---PG-LRPGGP 462
L P P+ G + F PG +RP P
Sbjct: 396 IAQLRPSPRWTAQGARPHPFQNMPGAIRPAAP 427
Score = 398 (145.2 bits), Expect = 1.3e-48, Sum P(2) = 1.3e-48
Identities = 101/263 (38%), Positives = 144/263 (54%)
Query: 59 VCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI----MYSHRDPSI--RK 112
VC D++ S GY +V++ + A A E +N M +N + + + R+ + R
Sbjct: 99 VC-DEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARA 155
Query: 113 SGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNA 172
+ NV+IKN +D++ L D F FG LS KV D +G+SKG+GFV FE E AQ A
Sbjct: 156 KEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKA 215
Query: 173 IKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKF-------------TNVYVNNLAETVT 219
+ +NG +N KQ+YVG ++ ER Q + KF N+YV NL + +
Sbjct: 216 VDEMNGKELNGKQIYVGRAQKKVER-QTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 274
Query: 220 DEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYV 279
DE L+K F FGTITSA VM + G+S+ FGFV F SP+ A AV ++NG K YV
Sbjct: 275 DERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 333
Query: 280 GRAQKRAEREADLRAKFEQERIS 302
AQ++ ER+A L ++ Q S
Sbjct: 334 ALAQRKEERQAHLTNQYMQRMAS 356
Score = 272 (100.8 bits), Expect = 4.0e-112, Sum P(3) = 4.0e-112
Identities = 53/93 (56%), Positives = 65/93 (69%)
Query: 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQD 81
PS Y SLYVGDL +V E+ LY+ FS ++S+RVCRD R SLGYAYVN+ P D
Sbjct: 6 PS-YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 82 AANAKEALNFMPINGKPIRIMYSHRDPSIRKSG 114
A A + +NF I GKP+RIM+S RDPS+RKSG
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSG 97
Score = 254 (94.5 bits), Expect = 8.9e-31, Sum P(2) = 8.9e-31
Identities = 64/203 (31%), Positives = 116/203 (57%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
++Y+ + +++++ +L DLF + +SV+V D+S +S G+ +V++ +DA A +
Sbjct: 160 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSK-GFGFVSFERHEDAQKAVDE 218
Query: 89 LNFMPINGKPIRIMYSH----RDPSIRK----------SGY-G-NVFIKNLDTSIDNKAL 132
+N +NGK I + + R +++ + Y G N+++KNLD ID++ L
Sbjct: 219 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 278
Query: 133 CDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFV 192
F+ FGT+ S KV ++ G+SKG+GFV F + E A A+ +NG ++ K +YV L
Sbjct: 279 RKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 337
Query: 193 RRQERAQQNVSPKFTNVYVNNLA 215
R++ER Q ++ TN Y+ +A
Sbjct: 338 RKEER-QAHL----TNQYMQRMA 355
Score = 162 (62.1 bits), Expect = 4.0e-112, Sum P(3) = 4.0e-112
Identities = 27/52 (51%), Positives = 44/52 (84%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTK 609
P ++ +MLGE+L+PL++ + P A K+TGMLLE+D +E+LH++ESPE+L++K
Sbjct: 523 PQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSK 574
Score = 103 (41.3 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 310 ANLYLKNLDDSINDEKLKELFSEFGTITS---CKVMVDQHGFSKGSGFAAFSMPEEATRA 366
A+LY+ +L + + L E FS G I S C+ M+ + S G + F P +A RA
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRR--SLGYAYVNFQQPADAERA 68
Query: 367 LNEMNGKMIGRKPLYVAVAQR 387
L+ MN +I KP+ + +QR
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQR 89
Score = 103 (41.3 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 24/99 (24%), Positives = 52/99 (52%)
Query: 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAAN 84
Y V+LYV +L+ +++ +L FS + S +V + + S G+ +V +S+P++A
Sbjct: 259 YQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATK 316
Query: 85 AKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNL 123
A +N + KP+ + + R R++ N +++ +
Sbjct: 317 AVTEMNGRIVATKPLYVALAQRKEE-RQAHLTNQYMQRM 354
Score = 84 (34.6 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 107 DPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFEN 165
+PS ++++ +L + L + F+ G +LS +V D +S GY +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 166 EEAAQNAIKMLNGMLINDKQVYV 188
A+ A+ +N +I K V +
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI 84
Score = 76 (31.8 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 208 NVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVEK 266
++YV +L VT+ L + F G I S V +D +S + +VNFQ P A A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 267 LN 268
+N
Sbjct: 72 MN 73
Score = 48 (22.0 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 29/139 (20%), Positives = 52/139 (37%)
Query: 404 APGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGPN 463
A +P +P Y + A PQQ Q + P G Q+ + + P
Sbjct: 465 AAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQG-QEPLTASMLASAPP 523
Query: 464 YIMP-------YHLQRQVHP---GQRTG----VRRSGNTHQMQQPQFMRNS-NQGIRYLD 508
+ L + +HP G+ TG + S H ++ P+ +R+ ++ + L
Sbjct: 524 QEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 583
Query: 509 --NARNGTDQSVVSMVPVP 525
A+ ++V S VP
Sbjct: 584 AHQAKEAAQKAVNSATGVP 602
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 959 (342.6 bits), Expect = 1.6e-111, Sum P(2) = 1.6e-111
Identities = 203/390 (52%), Positives = 262/390 (67%)
Query: 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQD 81
PS Y SLYVGDL +V E+ LY+ FS ++S+RVCRD R SLGYAYVN+ P D
Sbjct: 6 PS-YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 82 AANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGT 141
A A + +NF I GKP+RIM+S RDPS+RKSG GN+FIKNLD SIDNKAL DTF+AFG
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 142 VLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQ 200
+LSCKV D NG SKGYGFV FE +EAA+ AI+ +NGML+ND++V+VG F R+ER A+
Sbjct: 125 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 201 NVSPK-FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDA 259
K FTNVY+ N E + DE LK +FG FG S VM D GKS+ FGFV+F+ +
Sbjct: 184 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 260 AAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDD 319
A AV+++NG N K YVGRAQK+ ER+ +L+ KFEQ + R + +G NLY+KNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 320 SINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEE--ATRAL-NEMNGKMIG 376
I+DE+L++ FS FGTITS KVM++ G SKG GF FS + + RA+ N +
Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSYMQRMASVRAVPNPVINPYQP 362
Query: 377 RKP--LYVAVAQRKEERKARLQ-AQFAQIR 403
P ++A + + R A +Q AQ+R
Sbjct: 363 APPSGYFMAAIPQTQNRAAYYPPSQIAQLR 392
Score = 442 (160.7 bits), Expect = 5.4e-57, Sum P(2) = 5.4e-57
Identities = 102/298 (34%), Positives = 169/298 (56%)
Query: 107 DPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFEN 165
+PS ++++ +L + L + F+ G +LS +V D +S GY +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 166 EEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKK 225
A+ A+ +N +I K V + R + V N+++ NL +++ ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG----NIFIKNLDKSIDNKALYD 117
Query: 226 IFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKR 285
F FG I S V+ D +G S+ +GFV+F++ +AA A+EK+NG ND+ +VGR + R
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 286 AEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ 345
EREA+L A+ ++ N+Y+KN + ++DE+LK+LF +FG S KVM D+
Sbjct: 177 KEREAELGARAKEF----------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 346 HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
G SKG GF +F E+A +A++EMNGK + K +YV AQ+K ER+ L+ +F Q++
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 162 (62.1 bits), Expect = 1.6e-111, Sum P(2) = 1.6e-111
Identities = 27/52 (51%), Positives = 44/52 (84%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTK 609
P ++ +MLGE+L+PL++ + P A K+TGMLLE+D +E+LH++ESPE+L++K
Sbjct: 515 PQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSK 566
Score = 48 (22.0 bits), Expect = 1.8e-99, Sum P(2) = 1.8e-99
Identities = 29/139 (20%), Positives = 52/139 (37%)
Query: 404 APGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGPN 463
A +P +P Y + A PQQ Q + P G Q+ + + P
Sbjct: 457 AAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQG-QEPLTASMLASAPP 515
Query: 464 YIMP-------YHLQRQVHP---GQRTG----VRRSGNTHQMQQPQFMRNS-NQGIRYLD 508
+ L + +HP G+ TG + S H ++ P+ +R+ ++ + L
Sbjct: 516 QEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 575
Query: 509 --NARNGTDQSVVSMVPVP 525
A+ ++V S VP
Sbjct: 576 AHQAKEAAQKAVNSATGVP 594
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 679 (244.1 bits), Expect = 3.5e-111, Sum P(3) = 3.5e-111
Identities = 132/253 (52%), Positives = 179/253 (70%)
Query: 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQD 81
PS + SLYVGDL ++V E+ LY++F+ V V S+RVCRD R SLGYAYVNY N D
Sbjct: 11 PS-FSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLAD 69
Query: 82 AANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGT 141
A A + LN+ I G+P R+M+SHRDPS+RKSG GN+F+KNLD SIDNKAL DTF+ FG
Sbjct: 70 AERALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGN 129
Query: 142 VLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQN 201
+LSCKVA D G+SK YGFV +E+EE+A+ AI+ +NG+ + K VYVG F+++ ERA +
Sbjct: 130 ILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERATND 189
Query: 202 VSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAA 261
KFTN+YV N ++VT+ L+++F +G ITS IV D+ K+R F F+N+ ++A
Sbjct: 190 T--KFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDN--KNRKFCFINYADAESAK 245
Query: 262 AAVEKLNGTTNND 274
A++ LNG D
Sbjct: 246 NAMDNLNGKKITD 258
Score = 316 (116.3 bits), Expect = 3.5e-111, Sum P(3) = 3.5e-111
Identities = 73/162 (45%), Positives = 101/162 (62%)
Query: 276 VWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGT 335
+ YVG Q RA R A L+AKF+ + K +G NLY+KNLDD I+D L+ELF FGT
Sbjct: 416 ILYVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGT 475
Query: 336 ITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARL 395
ITS KVM D+ SKG GF F+ EEA +A+ EM+ K+I KPLYV +A+++E+R +RL
Sbjct: 476 ITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRL 535
Query: 396 QAQFAQIRAPGGMS-PLASGIPGYHHGAPRLGPQQLYYGQGT 436
Q +F M+ PL + + + +P+ PQ L + Q T
Sbjct: 536 QQRFRMHPIRHHMNNPLNTPM---QYASPQ-SPQ-LQFSQNT 572
Score = 227 (85.0 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
Identities = 57/168 (33%), Positives = 91/168 (54%)
Query: 208 NVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKL 267
N++V NL +++ ++ L F FG I S V D GKS+ +GFV+++ ++A A+EK+
Sbjct: 105 NIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKV 164
Query: 268 NGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLK 327
NG K YVG K++ER + KF NLY+KN DS+ + L+
Sbjct: 165 NGVQLGSKNVYVGPFIKKSERATN-DTKF-------------TNLYVKNFPDSVTETHLR 210
Query: 328 ELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMI 375
+LF+ +G ITS V +D ++ F ++ E A A++ +NGK I
Sbjct: 211 QLFNPYGEITSMIVKMDNK--NRKFCFINYADAESAKNAMDNLNGKKI 256
Score = 220 (82.5 bits), Expect = 9.2e-24, Sum P(2) = 9.2e-24
Identities = 67/193 (34%), Positives = 101/193 (52%)
Query: 204 PKFT--NVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAA 260
P F+ ++YV +L E VT+ L +IF G ++S V +DS KS + +VN+ + A
Sbjct: 11 PSFSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADA 70
Query: 261 AAAVEKLNGTTNNDKVWYVGRAQKR--AEREADLRAKFEQERISRYEKLKGANLYLKNLD 318
A++ LN T N K G+ + + R+ LR K N+++KNLD
Sbjct: 71 ERALDTLNYT--NIK----GQPARLMWSHRDPSLR------------KSGTGNIFVKNLD 112
Query: 319 DSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRK 378
SI+++ L + FS FG I SCKV D+ G SK GF + E A A+ ++NG +G K
Sbjct: 113 KSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSK 172
Query: 379 PLYVAVAQRKEER 391
+YV +K ER
Sbjct: 173 NVYVGPFIKKSER 185
Score = 187 (70.9 bits), Expect = 9.5e-50, Sum P(3) = 9.5e-50
Identities = 45/183 (24%), Positives = 94/183 (51%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
SG GN+ +V +L+++++ L+D FS ++S +V D+ +S Y +V+Y + + A
Sbjct: 101 SGTGNI--FVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSK-SYGFVHYEDEESA 157
Query: 83 ANAKEALNFMPINGKPIRI--MYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFG 140
A E +N + + K + + + + + + N+++KN S+ L F +G
Sbjct: 158 KEAIEKVNGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYG 217
Query: 141 TVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQ 200
+ S V +D+ +++ + F+ + + E+A+NA+ LNG I D + ++E A
Sbjct: 218 EITSMIVKMDN--KNRKFCFINYADAESAKNAMDNLNGKKITDDGQIDETYDPKKEEATA 275
Query: 201 NVS 203
+ S
Sbjct: 276 STS 278
Score = 182 (69.1 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 37/81 (45%), Positives = 53/81 (65%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKML 176
N++IKNLD ID+ L + F FGT+ S KV D QSKG+GFV F ++E A A+ +
Sbjct: 451 NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEM 510
Query: 177 NGMLINDKQVYVGLFVRRQER 197
+ +IN K +YVGL +R++R
Sbjct: 511 HLKIINGKPLYVGLAEKREQR 531
Score = 172 (65.6 bits), Expect = 2.4e-33, Sum P(3) = 2.4e-33
Identities = 39/97 (40%), Positives = 59/97 (60%)
Query: 208 NVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKL 267
N+Y+ NL + + D L+++F FGTITSA VM+D +S+ FGFV F S + A AV ++
Sbjct: 451 NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEM 510
Query: 268 NGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRY 304
+ N K YVG A+KR +R + L+ +F I +
Sbjct: 511 HLKIINGKPLYVGLAEKREQRLSRLQQRFRMHPIRHH 547
Score = 137 (53.3 bits), Expect = 3.5e-111, Sum P(3) = 3.5e-111
Identities = 27/52 (51%), Positives = 37/52 (71%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTK 609
P + ++LGE L+PLV N P A K+TGM+LEMD +E+L L+E+ E LK K
Sbjct: 812 PSMQKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEEQLKKK 863
Score = 115 (45.5 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 22/74 (29%), Positives = 44/74 (59%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKE 87
V+LY+ +L+ +++ L +LF + S +V RD+ K S G+ +V +++ ++A A
Sbjct: 450 VNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDE-KEQSKGFGFVCFASQEEANKAVT 508
Query: 88 ALNFMPINGKPIRI 101
++ INGKP+ +
Sbjct: 509 EMHLKIINGKPLYV 522
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 679 (244.1 bits), Expect = 3.5e-111, Sum P(3) = 3.5e-111
Identities = 132/253 (52%), Positives = 179/253 (70%)
Query: 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQD 81
PS + SLYVGDL ++V E+ LY++F+ V V S+RVCRD R SLGYAYVNY N D
Sbjct: 11 PS-FSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLAD 69
Query: 82 AANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGT 141
A A + LN+ I G+P R+M+SHRDPS+RKSG GN+F+KNLD SIDNKAL DTF+ FG
Sbjct: 70 AERALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGN 129
Query: 142 VLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQN 201
+LSCKVA D G+SK YGFV +E+EE+A+ AI+ +NG+ + K VYVG F+++ ERA +
Sbjct: 130 ILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERATND 189
Query: 202 VSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAA 261
KFTN+YV N ++VT+ L+++F +G ITS IV D+ K+R F F+N+ ++A
Sbjct: 190 T--KFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDN--KNRKFCFINYADAESAK 245
Query: 262 AAVEKLNGTTNND 274
A++ LNG D
Sbjct: 246 NAMDNLNGKKITD 258
Score = 316 (116.3 bits), Expect = 3.5e-111, Sum P(3) = 3.5e-111
Identities = 73/162 (45%), Positives = 101/162 (62%)
Query: 276 VWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGT 335
+ YVG Q RA R A L+AKF+ + K +G NLY+KNLDD I+D L+ELF FGT
Sbjct: 416 ILYVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGT 475
Query: 336 ITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARL 395
ITS KVM D+ SKG GF F+ EEA +A+ EM+ K+I KPLYV +A+++E+R +RL
Sbjct: 476 ITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRL 535
Query: 396 QAQFAQIRAPGGMS-PLASGIPGYHHGAPRLGPQQLYYGQGT 436
Q +F M+ PL + + + +P+ PQ L + Q T
Sbjct: 536 QQRFRMHPIRHHMNNPLNTPM---QYASPQ-SPQ-LQFSQNT 572
Score = 227 (85.0 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
Identities = 57/168 (33%), Positives = 91/168 (54%)
Query: 208 NVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKL 267
N++V NL +++ ++ L F FG I S V D GKS+ +GFV+++ ++A A+EK+
Sbjct: 105 NIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKV 164
Query: 268 NGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLK 327
NG K YVG K++ER + KF NLY+KN DS+ + L+
Sbjct: 165 NGVQLGSKNVYVGPFIKKSERATN-DTKF-------------TNLYVKNFPDSVTETHLR 210
Query: 328 ELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMI 375
+LF+ +G ITS V +D ++ F ++ E A A++ +NGK I
Sbjct: 211 QLFNPYGEITSMIVKMDNK--NRKFCFINYADAESAKNAMDNLNGKKI 256
Score = 220 (82.5 bits), Expect = 9.2e-24, Sum P(2) = 9.2e-24
Identities = 67/193 (34%), Positives = 101/193 (52%)
Query: 204 PKFT--NVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAA 260
P F+ ++YV +L E VT+ L +IF G ++S V +DS KS + +VN+ + A
Sbjct: 11 PSFSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADA 70
Query: 261 AAAVEKLNGTTNNDKVWYVGRAQKR--AEREADLRAKFEQERISRYEKLKGANLYLKNLD 318
A++ LN T N K G+ + + R+ LR K N+++KNLD
Sbjct: 71 ERALDTLNYT--NIK----GQPARLMWSHRDPSLR------------KSGTGNIFVKNLD 112
Query: 319 DSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRK 378
SI+++ L + FS FG I SCKV D+ G SK GF + E A A+ ++NG +G K
Sbjct: 113 KSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSK 172
Query: 379 PLYVAVAQRKEER 391
+YV +K ER
Sbjct: 173 NVYVGPFIKKSER 185
Score = 187 (70.9 bits), Expect = 9.5e-50, Sum P(3) = 9.5e-50
Identities = 45/183 (24%), Positives = 94/183 (51%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
SG GN+ +V +L+++++ L+D FS ++S +V D+ +S Y +V+Y + + A
Sbjct: 101 SGTGNI--FVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSK-SYGFVHYEDEESA 157
Query: 83 ANAKEALNFMPINGKPIRI--MYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFG 140
A E +N + + K + + + + + + N+++KN S+ L F +G
Sbjct: 158 KEAIEKVNGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYG 217
Query: 141 TVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQ 200
+ S V +D+ +++ + F+ + + E+A+NA+ LNG I D + ++E A
Sbjct: 218 EITSMIVKMDN--KNRKFCFINYADAESAKNAMDNLNGKKITDDGQIDETYDPKKEEATA 275
Query: 201 NVS 203
+ S
Sbjct: 276 STS 278
Score = 182 (69.1 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 37/81 (45%), Positives = 53/81 (65%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKML 176
N++IKNLD ID+ L + F FGT+ S KV D QSKG+GFV F ++E A A+ +
Sbjct: 451 NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEM 510
Query: 177 NGMLINDKQVYVGLFVRRQER 197
+ +IN K +YVGL +R++R
Sbjct: 511 HLKIINGKPLYVGLAEKREQR 531
Score = 172 (65.6 bits), Expect = 2.4e-33, Sum P(3) = 2.4e-33
Identities = 39/97 (40%), Positives = 59/97 (60%)
Query: 208 NVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKL 267
N+Y+ NL + + D L+++F FGTITSA VM+D +S+ FGFV F S + A AV ++
Sbjct: 451 NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEM 510
Query: 268 NGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRY 304
+ N K YVG A+KR +R + L+ +F I +
Sbjct: 511 HLKIINGKPLYVGLAEKREQRLSRLQQRFRMHPIRHH 547
Score = 137 (53.3 bits), Expect = 3.5e-111, Sum P(3) = 3.5e-111
Identities = 27/52 (51%), Positives = 37/52 (71%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTK 609
P + ++LGE L+PLV N P A K+TGM+LEMD +E+L L+E+ E LK K
Sbjct: 812 PSMQKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEEQLKKK 863
Score = 115 (45.5 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 22/74 (29%), Positives = 44/74 (59%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKE 87
V+LY+ +L+ +++ L +LF + S +V RD+ K S G+ +V +++ ++A A
Sbjct: 450 VNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDE-KEQSKGFGFVCFASQEEANKAVT 508
Query: 88 ALNFMPINGKPIRI 101
++ INGKP+ +
Sbjct: 509 EMHLKIINGKPLYV 522
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 950 (339.5 bits), Expect = 5.5e-111, Sum P(2) = 5.5e-111
Identities = 212/399 (53%), Positives = 267/399 (66%)
Query: 82 AANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGT 141
A A + +NF I GKPIRIM+S RDPS+RKSG GNVFIKNLD SIDNKAL DTF+AFG
Sbjct: 105 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 164
Query: 142 VLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQ 200
+LSCKV D NG SKGY FV FE +EAA AI+ +NGML+ND++V+VG F R+ER A+
Sbjct: 165 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 223
Query: 201 NVSPK-FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDA 259
K FTNVY+ N E V DE LK++F FG S VM+D GKS+ FGFV+++ +
Sbjct: 224 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHED 283
Query: 260 AAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQ---ERISRYEKLKGANLYLKN 316
A AVE++NG + KV +VGRAQK+ ER+A+L+ KFEQ ERISRY+ G NLY+KN
Sbjct: 284 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ---GVNLYIKN 340
Query: 317 LDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIG 376
LDD+I+DEKL++ FS FG+ITS KVM++ G SKG GF FS PEEAT+A+ EMNG+++G
Sbjct: 341 LDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVG 399
Query: 377 RKPLYVAVAQRKEERKARLQAQFAQ----IRA-PGG--MSPLASGIPGYHHGA-PRLGPQ 428
KPLYVA+AQRKEERKA L Q+ Q +RA P ++ GY A P+ +
Sbjct: 400 SKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGR 459
Query: 429 QLYYGQGTPGLMPPQAAGY-GFQQQVFPGL----RPGGP 462
YY M P G + Q F G+ R GP
Sbjct: 460 PPYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGP 498
Score = 445 (161.7 bits), Expect = 8.1e-57, Sum P(2) = 8.1e-57
Identities = 112/311 (36%), Positives = 176/311 (56%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
SG GNV ++ +L+++++ LYD FS ++S +V D++ S GYA+V++ + A
Sbjct: 136 SGVGNV--FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYAFVHFETQEAA 191
Query: 83 ANAKEALNFMPINGKPIRI-MYSHRDPSIRKSG-----YGNVFIKNLDTSIDNKALCDTF 136
A E +N M +N + + + + R + G + NV+IKN +D+++L + F
Sbjct: 192 DKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELF 251
Query: 137 AAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQE 196
+ FG LS KV D +G+SKG+GFV +E E A A++ +NG I+ K ++VG ++ E
Sbjct: 252 SQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVE 311
Query: 197 RAQQNVSPKF-------------TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSD 243
R Q + KF N+Y+ NL +T+ DE L+K F FG+ITSA VM + D
Sbjct: 312 R-QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-D 369
Query: 244 GKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISR 303
G+S+ FGFV F SP+ A AV ++NG K YV AQ++ ER+A L ++ Q R++
Sbjct: 370 GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ-RVAG 428
Query: 304 YEKLKGANLYL 314
L AN L
Sbjct: 429 MRALP-ANAIL 438
Score = 166 (63.5 bits), Expect = 5.5e-111, Sum P(2) = 5.5e-111
Identities = 29/77 (37%), Positives = 52/77 (67%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTKXXXXXXXX 617
P ++ +MLGE+L+PL++ + A K+TGMLLE+D +E+LH++ESPE+L++K
Sbjct: 620 PQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 679
Query: 618 XXXXXRSDVNEKLGSLA 634
+ + +K+G++A
Sbjct: 680 QAHHAKKEAAQKVGAVA 696
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 944 (337.4 bits), Expect = 3.0e-110, Sum P(2) = 3.0e-110
Identities = 207/398 (52%), Positives = 266/398 (66%)
Query: 82 AANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGT 141
A A + +NF I GKP+RIM+S RDPS+RKSG GN+FIKNLD SIDNKAL DTF+AFG
Sbjct: 1 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 60
Query: 142 VLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQ 200
+LSCKV D NG SKGYGFV FE +EAA+ AI+ +NGML+ND++V+VG F R+ER A+
Sbjct: 61 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 119
Query: 201 NVSPK-FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDA 259
K FTNVY+ N E + DE LK++FG FG S VM D GKS+ FGFV+F+ +
Sbjct: 120 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 179
Query: 260 AAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDD 319
A AV+++NG N K YVGRAQK+ ER+ +L+ KFEQ + R + +G NLY+KNLDD
Sbjct: 180 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 239
Query: 320 SINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKP 379
I+DE+L++ FS FGTITS KVM++ G SKG GF FS PEEAT+A+ EMNG+++ KP
Sbjct: 240 GIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 298
Query: 380 LYVAVAQRKEERKARLQAQFAQ----IRA-PGGM-SPLASGIP-GYHHGA-PRLGPQQLY 431
LYVA+AQRKEER+A L Q+ Q +RA P + +P P GY A P+ + Y
Sbjct: 299 LYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAY 358
Query: 432 Y--GQGTPGLMP-PQAAGYGFQQQVF---PG-LRPGGP 462
Y Q P P+ G + F PG +RP P
Sbjct: 359 YPTNQLAQLARPSPRWTAQGARPHPFQNMPGAIRPAAP 396
Score = 452 (164.2 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
Identities = 110/299 (36%), Positives = 166/299 (55%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
SG GN+ ++ +L+++++ LYD FS ++S +V D++ S GY +V++ + A
Sbjct: 32 SGVGNI--FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAA 87
Query: 83 ANAKEALNFMPINGKPIRI----MYSHRDPSI--RKSGYGNVFIKNLDTSIDNKALCDTF 136
A E +N M +N + + + R+ + R + NV+IKN +D++ L + F
Sbjct: 88 ERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELF 147
Query: 137 AAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQE 196
FG LS KV D +G+SKG+GFV FE E AQ A+ +NG +N KQ+YVG ++ E
Sbjct: 148 GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 207
Query: 197 RAQQNVSPKF-------------TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSD 243
R Q + KF N+YV NL + + DE L+K F FGTITSA VM +
Sbjct: 208 R-QTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG- 265
Query: 244 GKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERIS 302
G+S+ FGFV F SP+ A AV ++NG K YV AQ++ ER+A L ++ Q S
Sbjct: 266 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMAS 324
Score = 165 (63.1 bits), Expect = 3.0e-110, Sum P(2) = 3.0e-110
Identities = 27/52 (51%), Positives = 45/52 (86%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTK 609
P ++ +MLGE+L+PL++++ P A K+TGMLLE+D +E+LH++ESPE+L++K
Sbjct: 492 PQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHMLESPESLRSK 543
Score = 43 (20.2 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 27/134 (20%), Positives = 51/134 (38%)
Query: 409 SPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGPNYIMP- 467
+P +P Y + A PQQ Q + P G Q+ + + P
Sbjct: 439 TPAVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQPAVHVQG-QEPLTASMLASAPPQEQKQ 497
Query: 468 ------YHLQRQVHP---GQRTG----VRRSGNTHQMQQPQFMRNS-NQGIRYLD--NAR 511
+ L + +HP G+ TG + S H ++ P+ +R+ ++ + L A+
Sbjct: 498 MLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAK 557
Query: 512 NGTDQSVVSMVPVP 525
++V + VP
Sbjct: 558 EAAQKAVNNPTGVP 571
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 938 (335.3 bits), Expect = 1.0e-109, Sum P(2) = 1.0e-109
Identities = 209/392 (53%), Positives = 264/392 (67%)
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
+NF I GKPIRIM+S RDPS+RKSG GNVFIKNLD SIDNKAL DTF+AFG +LSCKV
Sbjct: 1 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 60
Query: 149 IDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQNVSPK-F 206
D NG SKGY FV FE +EAA AI+ +NGML+ND++V+VG F R+ER A+ K F
Sbjct: 61 CDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF 119
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEK 266
TNVY+ N E V DE+L+++F FG S VM+D GKS+ FGFV+++ + A AVE+
Sbjct: 120 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEE 179
Query: 267 LNGTTNNDKVWYVGRAQKRAEREADLRAKFEQ---ERISRYEKLKGANLYLKNLDDSIND 323
+NG + K +VGRAQK+ ER+A+L+ KFEQ ERISRY+ G NLY+KNLDD+I+D
Sbjct: 180 MNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQ---GVNLYIKNLDDTIDD 236
Query: 324 EKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVA 383
EKL++ FS FG+ITS KVM++ G SKG GF FS PEEAT+A+ EMNG+++G KPLYVA
Sbjct: 237 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 295
Query: 384 VAQRKEERKARLQAQFAQ----IRA-PGG--MSPLASGIPGYHHGA-PRLGPQQLYYGQG 435
+AQRKEERKA L Q+ Q +RA P ++ GY A P+ + YY
Sbjct: 296 LAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYTPN 355
Query: 436 TPGLMPPQAAGY-GFQQQVFPG----LRPGGP 462
M P G + Q F G LR GP
Sbjct: 356 QLAQMRPNPRWQQGGRPQGFQGMPSALRQSGP 387
Score = 443 (161.0 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
Identities = 114/312 (36%), Positives = 178/312 (57%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
SG GNV ++ +L+++++ LYD FS ++S +V D++ S GYA+V++ Q+A
Sbjct: 25 SGVGNV--FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYAFVHFET-QEA 79
Query: 83 AN-AKEALNFMPINGKPIRI-MYSHRDPSIRKSG-----YGNVFIKNLDTSIDNKALCDT 135
AN A E +N M +N + + + + R + G + NV+IKN +D++ L +
Sbjct: 80 ANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLREL 139
Query: 136 FAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQ 195
F+ FG LS KV D +G+SKG+GFV +E E A A++ +NG ++ K ++VG ++
Sbjct: 140 FSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKV 199
Query: 196 ERAQQNVSPKF-------------TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS 242
ER Q + KF N+Y+ NL +T+ DE L+K F FG+ITSA VM +
Sbjct: 200 ER-QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE- 257
Query: 243 DGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERIS 302
DG+S+ FGFV F SP+ A AV ++NG K YV AQ++ ER+A L ++ Q R++
Sbjct: 258 DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ-RVA 316
Query: 303 RYEKLKGANLYL 314
L AN L
Sbjct: 317 GMRALP-ANAIL 327
Score = 166 (63.5 bits), Expect = 1.0e-109, Sum P(2) = 1.0e-109
Identities = 29/77 (37%), Positives = 52/77 (67%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTKXXXXXXXX 617
P ++ +MLGE+L+PL++ + A K+TGMLLE+D +E+LH++ESPE+L++K
Sbjct: 508 PQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 567
Query: 618 XXXXXRSDVNEKLGSLA 634
+ + +K+G++A
Sbjct: 568 QAHHAKKEAAQKVGTVA 584
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 1005 (358.8 bits), Expect = 4.4e-109, Sum P(2) = 4.4e-109
Identities = 211/407 (51%), Positives = 274/407 (67%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
SLYVGDL V+E L+++F+QV V ++RVCRD + R SL YAYVNY N DA A +
Sbjct: 11 SLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDT 70
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN PI GK RIM+S RDPS+RKSG GNVFIKNLD ID+KAL DTF+AFG +LSCKV
Sbjct: 71 LNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVV 130
Query: 149 IDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTN 208
D SKG+GFV +E +E+A AI +NGM+IN ++V+VG F +ER Q KFTN
Sbjct: 131 TDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPT-EVKFTN 189
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLN 268
V+ NL+E V + LK++ +G IT+ +M D GKS+ FGF NF+S +AA VE N
Sbjct: 190 VFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENEN 249
Query: 269 GTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKE 328
G + K Y GRAQK+ EREA+L+ FE ++Y+ G NLY+KN+DDSI+++KL+E
Sbjct: 250 GKIFHGKPIYAGRAQKKIEREAELKHTFE----TKYQ---GVNLYIKNIDDSIDNDKLRE 302
Query: 329 LFSEFGTITSCKVMVDQHGF-SKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQR 387
+FS+FGTITS VM D SKG GF ++ P+EATRA+ EMNG+MIG KPLYVA+AQR
Sbjct: 303 VFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVALAQR 362
Query: 388 KEERKARLQAQFAQIRAPG---GMSPLASGIPGYHHGAPRLGPQQLY 431
K+ R+A+L+ Q Q G M P P + AP + PQ +Y
Sbjct: 363 KDIRRAQLEMQHQQKFKTGIRQQMPPTYGSGPVFFTPAP-VNPQVVY 408
Score = 223 (83.6 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 59/203 (29%), Positives = 104/203 (51%)
Query: 201 NVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGK-SRCFGFVNFQSPDA 259
N +P +++YV +L V+++ L +IF G +++ V +D++ + S + +VN+ +
Sbjct: 4 NFTPISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGAD 63
Query: 260 AAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDD 319
A A++ LN T K + +Q R+ LR K N+++KNLD
Sbjct: 64 AERALDTLNNTPIRGKACRIMWSQ----RDPSLR------------KSGVGNVFIKNLDK 107
Query: 320 SINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKP 379
I+ + L + FS FG I SCKV+ D SKG GF + E A +A+ ++NG MI +
Sbjct: 108 GIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQK 167
Query: 380 LYVAVAQRKEERKARLQAQFAQI 402
++V + +ER + +F +
Sbjct: 168 VFVGPFKSSKERGQPTEVKFTNV 190
Score = 124 (48.7 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 25/89 (28%), Positives = 49/89 (55%)
Query: 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAAN 84
Y V+LY+ +++ +++ +L ++FSQ + S V +D +S G+ +V Y+ P +A
Sbjct: 281 YQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATR 340
Query: 85 AKEALNFMPINGKPIRIMYSHRDPSIRKS 113
A +N I KP+ + + R IR++
Sbjct: 341 AVTEMNGRMIGTKPLYVALAQRK-DIRRA 368
Score = 93 (37.8 bits), Expect = 4.4e-109, Sum P(2) = 4.4e-109
Identities = 45/175 (25%), Positives = 64/175 (36%)
Query: 440 MPPQAAGYGFQQQVFPGLRPGGPNYIMPYHLQRQVH-PGQRTGVRRSGNTHQMQQPQFMR 498
MPP YG VF P P + + R + GQ GV + G M +
Sbjct: 386 MPPT---YG-SGPVFFTPAPVNPQVVYQQMMPRPRNWNGQPVGVPQ-GQYANMNYARGQP 440
Query: 499 NSNQGIRYLDNA--RNGTDQSVVSMVPVPFEV-SGMXXXXXXXXXXXXXXIXXXXXXXXX 555
N G R +NG V P+P + + +
Sbjct: 441 RQN-GPRQNGGQPRQNGPRPDVSGAQPIPVQQQTTLDVAQTQQAASSAESALNLQSIINL 499
Query: 556 XXPDDRTRMLGEQLYPLVENIEPVHASKVTGMLLE-MDQTEVLHLIESPEALKTK 609
D + LGE LYPL+ N +P A K+TGMLL+ + E+ L + + L K
Sbjct: 500 PSRDQQNVALGEHLYPLIHNSQPDLAGKITGMLLDSLPVEELFTLTQRQDLLADK 554
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 1011 (360.9 bits), Expect = 6.4e-108, Sum P(2) = 6.4e-108
Identities = 213/452 (47%), Positives = 292/452 (64%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ SLYVGDLE +V+E+ LYD+FS + V S+RVCRD ++SLGYAYVN+++ + A
Sbjct: 37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 96
Query: 87 EALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCK 146
E LN+ PI G+ RIM+S RDPS+RK G GN+FIKNL IDNKAL DTF+ FG +LS K
Sbjct: 97 EQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSK 156
Query: 147 VAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPK- 205
+A D NG+SKG+GFV FE E AA+ AI LNGML+N +++YV + R+ER Q K
Sbjct: 157 IATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKA 216
Query: 206 -FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAV 264
+TN+YV N+ TDE +++F FG I SA + KD+DGK + FGFVN++ + A AV
Sbjct: 217 HYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAV 276
Query: 265 EKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDE 324
E LN + N + YVGRAQK+ ER L+ ++E R+ + K +G NL++KNLDDS++DE
Sbjct: 277 EALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
Query: 325 KLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384
KL+E F+ +GTITS KVM ++G SKG GF FS PEEAT+A+ E N +++ KPLYVA+
Sbjct: 337 KLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 396
Query: 385 AQRKEERKARLQAQFA---QIR---APGGMSPLASGIPGYHHGAPRLG---PQQLYYGQG 435
AQRK+ R+++L Q Q+R A + A+G+PG G P+ + +
Sbjct: 397 AQRKDVRRSQLAQQIQARNQMRYQQATAAAAAAAAGMPGQFMPPMFYGVMPPRGVPFNGP 456
Query: 436 TPGLMPPQAAGYGFQQQVFPGLRPGGPNYIMP 467
P M P G + P GP Y +P
Sbjct: 457 NPQQMNPMG---GMPKNGMPPQFRNGPVYGVP 485
Score = 256 (95.2 bits), Expect = 4.2e-22, Sum P(2) = 4.2e-22
Identities = 54/180 (30%), Positives = 103/180 (57%)
Query: 24 GYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAA 83
G GN+ ++ +L +++ LYD FS ++S ++ D++ +S G+ +V++ A
Sbjct: 124 GSGNI--FIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSK-GFGFVHFEEEGAAK 180
Query: 84 NAKEALNFMPINGKPI----RIMYSHRDPSIR--KSGYGNVFIKNLDTSIDNKALCDTFA 137
A +ALN M +NG+ I + RD + K+ Y N+++KN+++ ++ + FA
Sbjct: 181 EAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFA 240
Query: 138 AFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER 197
FG ++S + D++G+ KG+GFV +E E A A++ LN +N +++YVG ++ ER
Sbjct: 241 KFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNER 300
Score = 223 (83.6 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
Identities = 59/198 (29%), Positives = 104/198 (52%)
Query: 200 QNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRC-FGFVNFQSPD 258
Q+V ++YV +L +V++ L IF G+++S V +D+ K+ + +VNF +
Sbjct: 31 QSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHE 90
Query: 259 AAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLD 318
A A+E+LN T ++ + +Q R+ LR K N+++KNL
Sbjct: 91 AGRKAIEQLNYTPIKGRLCRIMWSQ----RDPSLRKK------------GSGNIFIKNLH 134
Query: 319 DSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRK 378
I+++ L + FS FG I S K+ D++G SKG GF F A A++ +NG ++ +
Sbjct: 135 PDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQ 194
Query: 379 PLYVAVAQRKEERKARLQ 396
+YVA ++ER ++L+
Sbjct: 195 EIYVAPHLSRKERDSQLE 212
Score = 116 (45.9 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 25/89 (28%), Positives = 51/89 (57%)
Query: 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAAN 84
Y V+L+V +L+ +V++ +L + F+ + S +V R ++ +S G+ +V +S P++A
Sbjct: 319 YQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSK-GFGFVCFSTPEEATK 377
Query: 85 AKEALNFMPINGKPIRIMYSHRDPSIRKS 113
A N + GKP+ + + R +R+S
Sbjct: 378 AITEKNQQIVAGKPLYVAIAQRK-DVRRS 405
Score = 76 (31.8 bits), Expect = 6.4e-108, Sum P(2) = 6.4e-108
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 565 LGEQLYPLV--ENIEPVHASKVTGMLLEMDQTEVLHLIESPE 604
LGEQLY V + A K+TGM+L++ EV L+ES E
Sbjct: 509 LGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDE 550
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 875 (313.1 bits), Expect = 3.2e-100, Sum P(2) = 3.2e-100
Identities = 186/412 (45%), Positives = 261/412 (63%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
SLYVGDL +V E LYD F++ + SVR+C+D S SL Y Y N+ + QDA A E
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK 84
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
N +NGK IR+M+S R P R++G GNVF+KNL S+ N L D F FG ++SCKVA
Sbjct: 85 KNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA 144
Query: 149 IDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTN 208
+G+S+GYGFVQFE E+AA AI+ LN ++ DK++YVG F+++ +R + K+TN
Sbjct: 145 TLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPE--EKYTN 202
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLN 268
+Y+ NL V+++ L++ F FG I S + KD + R + FVNF +P+ A A E +N
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262
Query: 269 GTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKE 328
GT K YVGRAQK+AERE LR +F+++ + K +N+Y+KN++ ++ +E+L++
Sbjct: 263 GTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRK 322
Query: 329 LFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRK 388
FS+ GTITS K+M D+ G SKG GF FS PEEA A+ +G+M KPLYVA+AQ+K
Sbjct: 323 HFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKK 382
Query: 389 EERKARLQAQFAQIRAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLM 440
E+RK +LQ QF S AS PG + AP LYY PG++
Sbjct: 383 EDRKMQLQVQFGNRVEARKSSSSASVNPGTY--AP------LYYTNTHPGMV 426
Score = 234 (87.4 bits), Expect = 4.4e-26, Sum P(2) = 4.4e-26
Identities = 61/190 (32%), Positives = 98/190 (51%)
Query: 203 SPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAA 261
SP ++YV +L +VT+ L F F ++TS + KD S G+S C+G+ NF S A
Sbjct: 20 SPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDAN 79
Query: 262 AAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSI 321
A+EK N + N K+ V + R D R + + N+++KNL +S+
Sbjct: 80 LAIEKKNNSLLNGKMIRV----MWSVRAPDAR----RNGVG--------NVFVKNLPESV 123
Query: 322 NDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLY 381
+ L+++F +FG I SCKV + G S+G GF F + A A+ +N ++ K +Y
Sbjct: 124 TNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIY 183
Query: 382 VAVAQRKEER 391
V +K +R
Sbjct: 184 VGKFMKKTDR 193
Score = 139 (54.0 bits), Expect = 3.2e-100, Sum P(2) = 3.2e-100
Identities = 27/47 (57%), Positives = 39/47 (82%)
Query: 563 RMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTK 609
++LGE L+PLVE +EP A+K+TGMLLEMD++E+L L++SPE L +
Sbjct: 527 QLLGELLHPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPEDLAVR 573
Score = 37 (18.1 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 25 YGNVSLYVGDLEQNVNESQL 44
+G+ LYVG ++ QL
Sbjct: 266 FGSKCLYVGRAQKKAEREQL 285
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 839 (300.4 bits), Expect = 2.9e-99, Sum P(2) = 2.9e-99
Identities = 189/364 (51%), Positives = 242/364 (66%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKML 176
NVFIKNLD SIDNKAL DTF+AFG +LSCKV D NG SKGY FV FE +EAA AI+ +
Sbjct: 2 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 60
Query: 177 NGMLINDKQVYVGLFVRRQER-AQQNVSPK-FTNVYVNNLAETVTDEDLKKIFGHFGTIT 234
NGML+ND++V+VG F R+ER A+ K FTNVY+ N E V DE LK++F FG
Sbjct: 61 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 120
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRA 294
S VM+D +GKS+ FGFV+++ + A AVE++NG + K+ +VGRAQK+ ER+A+L+
Sbjct: 121 SVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKR 180
Query: 295 KFEQ---ERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKG 351
KFEQ ERISRY+ G NLY+KNLDD+I+DEKL++ FS FG+ITS KVM++ G SKG
Sbjct: 181 KFEQLKQERISRYQ---GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKG 236
Query: 352 SGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQ----IRA-PG 406
GF FS PEEAT+A+ EMNG+++G KPLYVA+AQRKEERKA L Q+ Q +RA P
Sbjct: 237 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPA 296
Query: 407 G--MSPLASGIPGYHHGA-PRLGPQQLYYGQGTPGLMPPQAAGY-GFQQQVFPGL----R 458
++ GY A P+ + YY M P G + Q F G+ R
Sbjct: 297 NAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIR 356
Query: 459 PGGP 462
GP
Sbjct: 357 QSGP 360
Score = 437 (158.9 bits), Expect = 6.9e-57, Sum P(2) = 6.9e-57
Identities = 108/305 (35%), Positives = 173/305 (56%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
++++ +L+++++ LYD FS ++S +V D++ S GYA+V++ + A A E
Sbjct: 2 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYAFVHFETQEAADKAIEK 59
Query: 89 LNFMPINGKPIRI-MYSHRDPSIRKSG-----YGNVFIKNLDTSIDNKALCDTFAAFGTV 142
+N M +N + + + + R + G + NV+IKN +D+++L + F+ FG
Sbjct: 60 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKT 119
Query: 143 LSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNV 202
LS KV D NG+SKG+GFV +E E A A++ +NG I+ K ++VG ++ ER Q +
Sbjct: 120 LSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVER-QAEL 178
Query: 203 SPKF-------------TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCF 249
KF N+Y+ NL +T+ DE L+K F FG+ITSA VM + DG+S+ F
Sbjct: 179 KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGF 237
Query: 250 GFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKG 309
GFV F SP+ A AV ++NG K YV AQ++ ER+A L ++ Q R++ L
Sbjct: 238 GFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ-RVAGMRALP- 295
Query: 310 ANLYL 314
AN L
Sbjct: 296 ANAIL 300
Score = 166 (63.5 bits), Expect = 2.9e-99, Sum P(2) = 2.9e-99
Identities = 29/77 (37%), Positives = 52/77 (67%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTKXXXXXXXX 617
P ++ +MLGE+L+PL++ + A K+TGMLLE+D +E+LH++ESPE+L++K
Sbjct: 470 PQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 529
Query: 618 XXXXXRSDVNEKLGSLA 634
+ + +K+G++A
Sbjct: 530 QAHHAKKEAAQKVGAVA 546
Score = 113 (44.8 bits), Expect = 6.3e-16, Sum P(2) = 6.3e-16
Identities = 25/101 (24%), Positives = 53/101 (52%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
S Y V+LY+ +L+ +++ +L FS + S +V + + S G+ +V +S+P++A
Sbjct: 191 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEA 248
Query: 83 ANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNL 123
A +N + KP+ + + R RK+ N +++ +
Sbjct: 249 TKAVTEMNGRIVGSKPLYVALAQRKEE-RKAHLTNQYMQRV 288
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
Identities = 187/314 (59%), Positives = 233/314 (74%)
Query: 87 EALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCK 146
E LN+ + GKP+RIM+S RDPS R SG GNVF+KNLD SIDNK LCD F+AFG VLSCK
Sbjct: 2 EVLNYCKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCK 61
Query: 147 VAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKF 206
VA D++G SKGYGFVQF ++ + A NG LI ++ ++V FV R Q + S F
Sbjct: 62 VARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFV---SRGQWDKSRVF 118
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEK 266
TNVYV NL ET TD DLK++FG FG ITSA+VMKD +GKSR FGFVNF+ +AA A+EK
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEK 178
Query: 267 LNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKL-KGANLYLKNLDDSINDEK 325
+NG ++K +VGRAQ++ R DL+AKFE E+I R K KG NLY+KNLDDS+++ K
Sbjct: 179 MNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTK 238
Query: 326 LKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385
L+ELFSEFGTITSCKVMV +G SKG GF FS EEA++A+ +MNGKM+G KP+YV++A
Sbjct: 239 LEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLA 298
Query: 386 QRKEERKARLQAQF 399
Q KE+ K LQ QF
Sbjct: 299 QCKEQHKLHLQTQF 312
Score = 367 (134.2 bits), Expect = 2.4e-33, P = 2.4e-33
Identities = 96/299 (32%), Positives = 160/299 (53%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
SG GNV +V +L+++++ QL D+FS +V+S +V RD S S GY +V + +
Sbjct: 28 SGRGNV--FVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSK-GYGFVQFYSDLSV 84
Query: 83 ANAKEALNFMPINGKPIRIM-YSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGT 141
A N I + I + + R + + NV++KNL + + L F FG
Sbjct: 85 YTACNFHNGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGE 144
Query: 142 VLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQN 201
+ S V D G+S+ +GFV FE EAA AI+ +NG+++++K+++VG R+ R + +
Sbjct: 145 ITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTE-D 203
Query: 202 VSPKFT--------------NVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSR 247
+ KF N+YV NL ++V + L+++F FGTITS VM S+G S+
Sbjct: 204 LKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISK 263
Query: 248 CFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEK 306
GFV F + + A+ A+ K+NG +K YV AQ + + + L+ +F S +++
Sbjct: 264 GVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKLHLQTQFNNPPPSPHQQ 322
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
Identities = 185/345 (53%), Positives = 238/345 (68%)
Query: 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQD 81
PS Y SLYVGDL +V E+ LY+ FS ++S+R+CRD S YAYVN+ + +D
Sbjct: 6 PS-YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKD 64
Query: 82 AANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGT 141
A +A + +NF I GKP+RIM+S RDPS+RKSG GN+F+KNLD SI+NKAL DT +AFG
Sbjct: 65 AEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGN 124
Query: 142 VLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQ 200
+LSC V D NG SKGYGFV FE EAA+ AIK +NGML+N ++V+VG F R+ER A+
Sbjct: 125 ILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAEL 183
Query: 201 NVSPK-FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDA 259
K F NVY+ N E + DE LK +FG FG S VM D GKS+ FGFV+F+ +
Sbjct: 184 GARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 260 AAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDD 319
A AV+++NG N K YVGRAQK+ ER+ +L+ FEQ + R + + NLY+KNLDD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 320 SINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEAT 364
I+DE+L++ FS FGTITS KVM++ G SKG GF FS PEEAT
Sbjct: 304 GIDDERLRKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEAT 347
Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
Identities = 98/299 (32%), Positives = 170/299 (56%)
Query: 107 DPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAID--SNGQSKGYGFVQFE 164
+PS ++++ +L + L + F+ G +LS ++ D ++G S Y +V F+
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSN-YAYVNFQ 60
Query: 165 NEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLK 224
+ + A++A+ +N +I K V + R + V N++V NL +++ ++ L
Sbjct: 61 HTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG----NIFVKNLDKSINNKALY 116
Query: 225 KIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQK 284
FG I S V+ D +G S+ +GFV+F++ +AA A++K+NG N + +VG+ +
Sbjct: 117 DTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKS 175
Query: 285 RAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD 344
R EREA+L A+ ++ N+Y+KN + ++DE+LK+LF +FG S KVM D
Sbjct: 176 RKEREAELGARAKEF----------PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 345 QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
+ G SKG GF +F E+A +A++EMNGK + K +YV AQ+K ER+ L+ F Q++
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 911 (325.7 bits), Expect = 2.1e-91, P = 2.1e-91
Identities = 187/369 (50%), Positives = 250/369 (67%)
Query: 21 VPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQ 80
V + Y SLYVGDL +V E L+ FS V V+S+R+CRDQ R SLGYAYVN+
Sbjct: 61 VAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLA 120
Query: 81 DAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFG 140
DA A + +NF I GK IR+M+S RD +R+SG GNVFIKNLD SIDNK L + F+AFG
Sbjct: 121 DAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFG 180
Query: 141 TVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQ 200
+LS KV D G SKGY FV F+N+ AA AI+ +NG L+ +V+VG F R++R +
Sbjct: 181 KILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAE 239
Query: 201 --NVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPD 258
+ + +FTNVY+ N + DE LK +F +G S VM DS GKS+ FGFV+F S +
Sbjct: 240 LRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHE 299
Query: 259 AAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLD 318
AA AVE++NG N ++ +VGRAQK+ ER+A+L+ FEQ + R +G LY+KNLD
Sbjct: 300 AAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLD 359
Query: 319 DSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRK 378
D+I+DEKL+ FS FG+I+ KVM ++ G SKG G FS PE+AT+A+ EMNG+++G K
Sbjct: 360 DTIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSK 418
Query: 379 PLYVAVAQR 387
PL +A+AQR
Sbjct: 419 PLSIALAQR 427
Score = 399 (145.5 bits), Expect = 4.6e-37, P = 4.6e-37
Identities = 97/288 (33%), Positives = 162/288 (56%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
++++ +L + L F+ G VLS ++ D +S GY +V F AQ A+
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITS 235
+N +I K + + ++ +R +++ NV++ NL +++ ++ L + F FG I S
Sbjct: 129 MNFDIIKGKSIRL-MWSQRDAYLRRS---GIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 184
Query: 236 AIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAK 295
+ VM D G S+ + FV+FQ+ AA A+E++NG +VGR + R +REA+LR+K
Sbjct: 185 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 243
Query: 296 FEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFA 355
S + N+Y+KN ++DE+LK++FS++G S KVM D G SKG GF
Sbjct: 244 -----ASEF-----TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 293
Query: 356 AFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
+F E A +A+ EMNG+ I + ++V AQ+K ER+A L+ F Q++
Sbjct: 294 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 341
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 911 (325.7 bits), Expect = 2.1e-91, P = 2.1e-91
Identities = 187/369 (50%), Positives = 250/369 (67%)
Query: 21 VPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQ 80
V + Y SLYVGDL +V E L+ FS V V+S+R+CRDQ R SLGYAYVN+
Sbjct: 3 VAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLA 62
Query: 81 DAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFG 140
DA A + +NF I GK IR+M+S RD +R+SG GNVFIKNLD SIDNK L + F+AFG
Sbjct: 63 DAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFG 122
Query: 141 TVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQ 200
+LS KV D G SKGY FV F+N+ AA AI+ +NG L+ +V+VG F R++R +
Sbjct: 123 KILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAE 181
Query: 201 --NVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPD 258
+ + +FTNVY+ N + DE LK +F +G S VM DS GKS+ FGFV+F S +
Sbjct: 182 LRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHE 241
Query: 259 AAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLD 318
AA AVE++NG N ++ +VGRAQK+ ER+A+L+ FEQ + R +G LY+KNLD
Sbjct: 242 AAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLD 301
Query: 319 DSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRK 378
D+I+DEKL+ FS FG+I+ KVM ++ G SKG G FS PE+AT+A+ EMNG+++G K
Sbjct: 302 DTIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSK 360
Query: 379 PLYVAVAQR 387
PL +A+AQR
Sbjct: 361 PLSIALAQR 369
Score = 399 (145.5 bits), Expect = 4.6e-37, P = 4.6e-37
Identities = 97/288 (33%), Positives = 162/288 (56%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
++++ +L + L F+ G VLS ++ D +S GY +V F AQ A+
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITS 235
+N +I K + + ++ +R +++ NV++ NL +++ ++ L + F FG I S
Sbjct: 71 MNFDIIKGKSIRL-MWSQRDAYLRRS---GIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 126
Query: 236 AIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAK 295
+ VM D G S+ + FV+FQ+ AA A+E++NG +VGR + R +REA+LR+K
Sbjct: 127 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 185
Query: 296 FEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFA 355
S + N+Y+KN ++DE+LK++FS++G S KVM D G SKG GF
Sbjct: 186 -----ASEF-----TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 235
Query: 356 AFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
+F E A +A+ EMNG+ I + ++V AQ+K ER+A L+ F Q++
Sbjct: 236 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 283
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 881 (315.2 bits), Expect = 3.2e-88, P = 3.2e-88
Identities = 170/320 (53%), Positives = 227/320 (70%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
SGY SLYVGDL +V E+ LY+ FS ++S+RVCRD + R SLGYAY+N+ P DA
Sbjct: 6 SGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 83 ANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTV 142
A + +NF + G+PIRIM+S RDP +RKSG GN+FIKNL+ SIDNKAL DTF+ FG +
Sbjct: 66 ERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNI 125
Query: 143 LSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQN 201
LSCKVA D +G S+G+GFV FE EAAQ AI +NGML+ND++V+VG F R+ER A+
Sbjct: 126 LSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELG 184
Query: 202 VSP-KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAA 260
+FTN+YV NL V ++ L+ +F FG + S VM+D+ G SRCFGFVNF+ + A
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEA 244
Query: 261 AAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDS 320
AV +NG + ++ Y GRAQKR ER+ +L+ +FEQ + R + +G NLY+KNLDDS
Sbjct: 245 QKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDS 304
Query: 321 INDEKLKELFSEFGTITSCK 340
I+D+KL++ FS +G ITS K
Sbjct: 305 IDDDKLRKEFSPYGVITSAK 324
Score = 387 (141.3 bits), Expect = 1.2e-35, P = 1.2e-35
Identities = 93/294 (31%), Positives = 164/294 (55%)
Query: 113 SGY--GNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAA 169
SGY ++++ +L + L + F+ G +LS +V D + +S GY ++ F+ A
Sbjct: 6 SGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 170 QNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGH 229
+ A+ +N ++ + + + ++ +R +++ N+++ NL +++ ++ L F
Sbjct: 66 ERALDTMNFEMLKGQPIRI-MWSQRDPGLRKS---GVGNIFIKNLEDSIDNKALYDTFST 121
Query: 230 FGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAERE 289
FG I S V D G SR FGFV+F++ +AA A+ +NG ND+ +VG + R ERE
Sbjct: 122 FGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRERE 180
Query: 290 ADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFS 349
A+L A+ L+ N+Y+KNL ++++ L++LFS+FG + S KVM D G S
Sbjct: 181 AELGAR----------ALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHS 230
Query: 350 KGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
+ GF F EEA +A+ MNGK + + LY AQ++ ER+ L+ +F Q++
Sbjct: 231 RCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMK 284
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 871 (311.7 bits), Expect = 3.7e-87, P = 3.7e-87
Identities = 179/367 (48%), Positives = 244/367 (66%)
Query: 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAAN 84
Y +LYVGDL+ +V E LY F + R+CRD RS LGY YVN+ P DA
Sbjct: 15 YLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEW 74
Query: 85 AKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS 144
A +NF INGKP R+M+S D +RKSG GN+FIKNLD SIDN+AL F+AFG +LS
Sbjct: 75 ALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILS 134
Query: 145 CKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQ---N 201
CKV D NG SKGY +V F++ AA AI +NG+ +N++QVYVG F +ERA +
Sbjct: 135 CKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR 193
Query: 202 VSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAA 261
FTNV+V N+ + + DE LK++F +G S V++D+ GKS+ FGFV +++ +AA
Sbjct: 194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQ 253
Query: 262 AAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSI 321
AV L+G + + KV YVGRAQK+ ER A+LR +FE+ R+ + G +Y+KNLD++I
Sbjct: 254 KAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETI 313
Query: 322 NDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLY 381
NDEKLKE FS FG+I+ KVM++ G KG G FS EEAT+A++EMNG+++G KPL+
Sbjct: 314 NDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLH 372
Query: 382 VAVAQRK 388
V + Q +
Sbjct: 373 VTLGQAR 379
Score = 372 (136.0 bits), Expect = 6.4e-34, P = 6.4e-34
Identities = 101/315 (32%), Positives = 168/315 (53%)
Query: 107 DPSIRKSGY--GNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSK-GYGFVQF 163
+P+ +K Y +++ +LD + L F G + ++ D +S GYG+V F
Sbjct: 7 NPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNF 66
Query: 164 ENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDL 223
A+ A+ +N LIN K + ++ + +R +++ N+++ NL +++ + L
Sbjct: 67 RFPADAEWALNTMNFDLINGKPFRL-MWSQPDDRLRKS---GVGNIFIKNLDKSIDNRAL 122
Query: 224 KKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQ 283
+F FG I S V+ D +G S+ + +V+F S AA A+ +NG N++ YVGR +
Sbjct: 123 FYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFK 181
Query: 284 KRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMV 343
ER A++R + ++ N+++KN+ D I+DEKLKELF E+G S KV+
Sbjct: 182 FPEERAAEVRTR---------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIR 232
Query: 344 DQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
D G SKG GF + E A +A+ +++GK I K LYV AQ+K ER A L+ +F ++R
Sbjct: 233 DASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLR 292
Query: 404 APGGMSPLASGIPGY 418
P G+P Y
Sbjct: 293 LKEKSRP--PGVPIY 305
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
Identities = 180/367 (49%), Positives = 244/367 (66%)
Query: 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAAN 84
Y +LYVGDL+ +V E LY F + R+CRD RS LGY YVN+ P DA
Sbjct: 15 YLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEW 74
Query: 85 AKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS 144
A +NF INGKP R+M+S D +RKSG GN+FIKNLD SIDN+AL F+AFG++LS
Sbjct: 75 ALNTMNFDLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILS 134
Query: 145 CKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQ-NVS 203
CKV D NG SKGY +V F++ AA AI +NG+ +N++QVYVG F +ERA +
Sbjct: 135 CKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR 193
Query: 204 PK--FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAA 261
K FTNV+V N + + D+ LK++F +G S V++DS GKS+ FGFV +++ +AA
Sbjct: 194 DKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQ 253
Query: 262 AAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSI 321
AV L+G + + KV YVGRAQK+ ER A+LR +FE+ R+ + G +Y+KNLD++I
Sbjct: 254 KAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETI 313
Query: 322 NDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLY 381
+DEKLKE FS FG+I+ KVMV+ G KG G FS EEAT+A++EMNG+++G KPL
Sbjct: 314 DDEKLKEEFSSFGSISRAKVMVEV-GQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQ 372
Query: 382 VAVAQRK 388
V + Q +
Sbjct: 373 VTLGQAR 379
Score = 375 (137.1 bits), Expect = 2.9e-34, P = 2.9e-34
Identities = 101/315 (32%), Positives = 169/315 (53%)
Query: 107 DPSIRKSGY--GNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSK-GYGFVQF 163
+P+ +K Y +++ +LD + L F G + ++ D +S GYG+V F
Sbjct: 7 NPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNF 66
Query: 164 ENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDL 223
A+ A+ +N LIN K + ++ + +R +++ N+++ NL +++ + L
Sbjct: 67 RFPADAEWALNTMNFDLINGKPFRL-MWSQPDDRLRKS---GIGNIFIKNLDKSIDNRAL 122
Query: 224 KKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQ 283
+F FG+I S V+ D +G S+ + +V+F S AA A+ +NG N++ YVGR +
Sbjct: 123 FYLFSAFGSILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFK 181
Query: 284 KRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMV 343
ER A++R + +K N+++KN D ++D+KLKELFSE+G S KV+
Sbjct: 182 FPEERAAEVRTR---------DKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIR 232
Query: 344 DQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
D G SKG GF + E A +A+ +++GK I K LYV AQ+K ER A L+ +F ++R
Sbjct: 233 DSSGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLR 292
Query: 404 APGGMSPLASGIPGY 418
P G+P Y
Sbjct: 293 LKEKSRP--PGVPIY 305
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
Identities = 180/367 (49%), Positives = 241/367 (65%)
Query: 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAAN 84
Y +LYVGDL+ +V E LY F + R+CRD RS LGY YVN+ P DA
Sbjct: 15 YLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEW 74
Query: 85 AKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS 144
A +NF INGKP R+M+S D +RKSG GN+FIKNLD SIDN+AL F+AFG +LS
Sbjct: 75 ALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILS 134
Query: 145 CKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQ---N 201
CKV D NG SKGY +V F++ AA AI +NG+ +N++QVYVG F +ERA +
Sbjct: 135 CKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR 193
Query: 202 VSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAA 261
FTNV+V N + DE LK+IF +G S V++D+ GKS+ FGFV +++ +AA
Sbjct: 194 DRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQ 253
Query: 262 AAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSI 321
AV L+G + N KV YVGRAQK+ ER A+LR +FE+ R+ + G +Y+KNLD++I
Sbjct: 254 KAVLDLHGKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETI 313
Query: 322 NDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLY 381
+DEKLKE FS FG+I+ KVMV+ G KG G FS E+AT+A++EMNG+ +G KPL+
Sbjct: 314 DDEKLKEEFSSFGSISRAKVMVEV-GQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPLH 372
Query: 382 VAVAQRK 388
V + Q +
Sbjct: 373 VTLGQAR 379
Score = 359 (131.4 bits), Expect = 1.9e-32, P = 1.9e-32
Identities = 98/315 (31%), Positives = 167/315 (53%)
Query: 107 DPSIRKSGY--GNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSK-GYGFVQF 163
+P+ +K Y +++ +LD + L F G + ++ D +S GYG+V F
Sbjct: 7 NPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNF 66
Query: 164 ENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDL 223
A+ A+ +N LIN K + ++ + +R +++ N+++ NL +++ + L
Sbjct: 67 RFPADAEWALNTMNFDLINGKPFRL-MWSQPDDRLRKS---GVGNIFIKNLDKSIDNRAL 122
Query: 224 KKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQ 283
+F FG I S V+ D +G S+ + +V+F S AA A+ +NG N++ YVGR +
Sbjct: 123 FYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFK 181
Query: 284 KRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMV 343
ER A++R + ++ N+++KN + ++DEKLKE+FS +G S KV+
Sbjct: 182 FPEERAAEVRTR---------DRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIR 232
Query: 344 DQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
D G SKG GF + E A +A+ +++GK I K LYV AQ+K ER A L+ +F ++R
Sbjct: 233 DASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLAELRRRFERLR 292
Query: 404 APGGMSPLASGIPGY 418
P G+P Y
Sbjct: 293 LKEKSRP--PGVPIY 305
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
Identities = 177/369 (47%), Positives = 240/369 (65%)
Query: 21 VPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQ 80
V + Y SLYVGDL ++V E L+ F+ V V+S+R+CRD SLGY YVN+
Sbjct: 3 VETKYRAASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVG 62
Query: 81 DAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFG 140
DA A E +NF I GK IR+M+S RD +RKSG GNVFIKNLD SIDNK L + F+ FG
Sbjct: 63 DAQKALETMNFDLIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFG 122
Query: 141 TVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQ 199
++S KV D G SKGYGFV ++++ AA AI+ +NG L+ D ++V F R++R A+
Sbjct: 123 KIMSSKVMTDEEG-SKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREAE 181
Query: 200 QNVSP-KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPD 258
P +FTNVY+ N + + DE L+ +F +G S VMKD+ GKS+ FGFV+F S
Sbjct: 182 LREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHK 241
Query: 259 AAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLD 318
AA AVE +NG N + +VGRAQK+ ER+A+L+ FEQ + R + A LY+KNLD
Sbjct: 242 AAKNAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLD 301
Query: 319 DSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRK 378
D+I+DE L++ FS FG+I KVM + G SKG G F PE A +A+ EMNG+++G K
Sbjct: 302 DTIDDETLRKEFSVFGSICRVKVM-QEAGQSKGFGLICFFSPEAAAKAMAEMNGRILGSK 360
Query: 379 PLYVAVAQR 387
PL +A+ Q+
Sbjct: 361 PLNIALGQK 369
Score = 388 (141.6 bits), Expect = 9.3e-36, P = 9.3e-36
Identities = 95/288 (32%), Positives = 162/288 (56%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
++++ +L + L F G VLS ++ D + +S GYG+V F AQ A++
Sbjct: 11 SLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKALET 70
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITS 235
+N LI K + + ++ +R +++ NV++ NL +++ ++ L + F FG I S
Sbjct: 71 MNFDLIKGKSIRL-MWSQRDACLRKS---GIGNVFIKNLDKSIDNKTLYEHFSPFGKIMS 126
Query: 236 AIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAK 295
+ VM D +G S+ +GFV++Q AA A+E++NG D +V R + R +REA+LR
Sbjct: 127 SKVMTDEEG-SKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREAELR-- 183
Query: 296 FEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFA 355
E+ + + N+Y+KN D ++DE L+ +FS++G S KVM D G SK GF
Sbjct: 184 ---EKPAEF-----TNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFV 235
Query: 356 AFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
+F + A A+ +MNG+ I + ++V AQ+K ER+A L+ F Q++
Sbjct: 236 SFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQMK 283
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 852 (305.0 bits), Expect = 3.8e-85, P = 3.8e-85
Identities = 177/367 (48%), Positives = 242/367 (65%)
Query: 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAAN 84
Y +LYVGDL+ +V E LY F + R+CRD RS LGY YVN+ P DA
Sbjct: 15 YLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEW 74
Query: 85 AKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS 144
A +NF INGKP R+M+S D +RKSG GN+FIKNLD SIDN+AL F+AFG +LS
Sbjct: 75 ALNTMNFDLINGKPFRLMWSQPDDHLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILS 134
Query: 145 CKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQ---N 201
CKV D NG SKGY +V F++ AA AI +NG+ +N++QVYVG F +ERA +
Sbjct: 135 CKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR 193
Query: 202 VSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAA 261
FTNV+V N + + DE LKK+F +G S V++D+ GKS+ FGFV +++ +AA
Sbjct: 194 DRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQ 253
Query: 262 AAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSI 321
AV +L+G + + KV VGRAQK+ ER A+LR +FE+ ++ + G +Y+KNLD++I
Sbjct: 254 KAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVPIYIKNLDETI 313
Query: 322 NDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLY 381
NDEKLKE FS FG+I+ KVM++ G KG G FS EEA++A+NEMNG+++G K L+
Sbjct: 314 NDEKLKEEFSLFGSISRAKVMMEV-GQGKGFGVVCFSSFEEASKAVNEMNGRVVGSKTLH 372
Query: 382 VAVAQRK 388
V + Q +
Sbjct: 373 VTLGQAR 379
Score = 353 (129.3 bits), Expect = 8.8e-32, P = 8.8e-32
Identities = 96/302 (31%), Positives = 160/302 (52%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSK-GYGFVQFENEEAAQNAIKML 176
+++ +LD + L F G + ++ D +S GYG+V F A+ A+ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 177 NGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSA 236
N LIN K + ++ + + +++ N+++ NL +++ + L +F FG I S
Sbjct: 80 NFDLINGKPFRL-MWSQPDDHLRKS---GVGNIFIKNLDKSIDNRALFYLFSAFGNILSC 135
Query: 237 IVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKF 296
V+ D +G S+ + +V+F S AA A+ +NG N++ YVGR + ER A++R +
Sbjct: 136 KVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR- 193
Query: 297 EQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAA 356
++ N+++KN D I+DEKLK+LFSE+G S KV+ D G SKG GF
Sbjct: 194 --------DRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVR 245
Query: 357 FSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRAPGGMSPLASGIP 416
+ E A +A+ E++GK I K L V AQ+K ER A L+ +F +++ P G+P
Sbjct: 246 YETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRP--PGVP 303
Query: 417 GY 418
Y
Sbjct: 304 IY 305
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 823 (294.8 bits), Expect = 4.5e-82, P = 4.5e-82
Identities = 182/423 (43%), Positives = 262/423 (61%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
SLYVGDL +V E L D FS VVSV +CR+ S+ YAY+N+ +P A+NA
Sbjct: 22 SLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTR 81
Query: 89 LNFMPINGKPIRIMYSHRDPSIRK---SGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSC 145
LN + GK +RIM+S RD + R+ +G+ N+++KNLD+SI + L F FG++LSC
Sbjct: 82 LNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSC 141
Query: 146 KVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPK 205
KV ++ NGQSKG+GFVQF+ E++A +A L+G ++ K+++V F+ + ERA +
Sbjct: 142 KV-VEENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQD 200
Query: 206 FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVE 265
TNVYV NL ETVTD+ L +F +GT++S +VM+D G+SR FGFVNF +P+ A A+E
Sbjct: 201 STNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAME 260
Query: 266 KLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEK 325
L G K +VG+A K+ ER L+ KF I++ ++ +NLY+KNL +S+N+ +
Sbjct: 261 SLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAK-PNMRWSNLYVKNLSESMNETR 319
Query: 326 LKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385
L+E+F +G I S KVM ++G SKG GF FS EE+ +A +NG ++ KP+ V VA
Sbjct: 320 LREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVA 379
Query: 386 QRKEERKARLQAQF-AQIR----APGGMSPLASGIPGY---HHGA--P-RLGPQQLYYGQ 434
+RKE+R RLQ F AQ R AP SP A + Y +G P ++G Y G
Sbjct: 380 ERKEDRIKRLQQYFQAQPRQYTQAPSAPSP-AQPVLSYVSSSYGCFQPFQVGTSYYYMGN 438
Query: 435 GTP 437
P
Sbjct: 439 QVP 441
Score = 356 (130.4 bits), Expect = 2.2e-30, P = 2.2e-30
Identities = 89/289 (30%), Positives = 159/289 (55%)
Query: 113 SGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQN 171
S +G++++ +L + K L D F+ V+S + +S G+S Y ++ F++ +A N
Sbjct: 18 SRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASN 77
Query: 172 AIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFG 231
A+ LN + K + + ++ +R ++ F N+YV NL ++T L+++F FG
Sbjct: 78 AMTRLNHSDLKGKAMRI-MWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFG 136
Query: 232 TITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREAD 291
+I S V++++ G+S+ FGFV F + +A +A L+G+ K +V + + ER A
Sbjct: 137 SILSCKVVEEN-GQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAA- 194
Query: 292 LRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKG 351
Q+ N+Y+KNL +++ D+ L LFS++GT++S VM D G S+G
Sbjct: 195 --MAGNQD---------STNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRG 243
Query: 352 SGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFA 400
GF F PE A +A+ + G +G K L+V A +K+ER+ L+ +F+
Sbjct: 244 FGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFS 292
Score = 350 (128.3 bits), Expect = 1.2e-29, P = 1.2e-29
Identities = 90/292 (30%), Positives = 160/292 (54%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
+G+ N LYV +L+ ++ S L +F ++S +V + + S G+ +V + Q A
Sbjct: 109 TGFAN--LYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQ--SKGFGFVQFDTEQSA 164
Query: 83 ANAKEALNFMPINGKPIRIM-YSHRDPSIRKSGYG---NVFIKNLDTSIDNKALCDTFAA 138
+A+ AL+ + GK + + + ++D +G NV++KNL ++ + L F+
Sbjct: 165 VSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQ 224
Query: 139 FGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERA 198
+GTV S V D G+S+G+GFV F N E A+ A++ L G+ + K+++VG +++ ER
Sbjct: 225 YGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERR 284
Query: 199 Q---QNVSPKF--------TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSR 247
+ Q S F +N+YV NL+E++ + L++IFG +G I SA VM +G+S+
Sbjct: 285 EMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSK 344
Query: 248 CFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQE 299
FGFV F + + + A LNG + K V A+++ +R L+ F+ +
Sbjct: 345 GFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERKEDRIKRLQQYFQAQ 396
Score = 261 (96.9 bits), Expect = 2.0e-19, P = 2.0e-19
Identities = 69/192 (35%), Positives = 108/192 (56%)
Query: 203 SPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAA 261
S +F ++YV +L+ VT++DL F + S + ++S GKS C+ ++NF SP +A+
Sbjct: 17 SSRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSAS 76
Query: 262 AAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSI 321
A+ +LN ++D G+A + + DL + R + ANLY+KNLD SI
Sbjct: 77 NAMTRLN---HSD---LKGKAMRIMWSQRDLAYR-------RRTRTGFANLYVKNLDSSI 123
Query: 322 NDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLY 381
L+ +F FG+I SCKV V+++G SKG GF F + A A + ++G M+ K L+
Sbjct: 124 TSSCLERMFCPFGSILSCKV-VEENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLF 182
Query: 382 VAVAQRKEERKA 393
VA K+ER A
Sbjct: 183 VAKFINKDERAA 194
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 575 (207.5 bits), Expect = 2.6e-71, Sum P(2) = 2.6e-71
Identities = 137/293 (46%), Positives = 181/293 (61%)
Query: 187 YVGLFVRRQER-AQQNVSPK-FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDG 244
+VG F R+ER A+ K FTNVY+ N E + DE LK++FG FG S VM D G
Sbjct: 1 FVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESG 60
Query: 245 KSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRY 304
KS+ FGFV+F+ + A AV+++NG N K YVGRAQK+ ER+ +L+ KFEQ + R
Sbjct: 61 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI 120
Query: 305 EKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEAT 364
+ +G NLY+KNLDD I+DE+L++ FS FGTITS KVM++ G SKG GF FS PEEAT
Sbjct: 121 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEAT 179
Query: 365 RALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQ----IRA-PGGM-SPLASGIP-G 417
+A+ EMNG+++ KPLYVA+AQRKEER+A L Q+ Q +RA P + +P P G
Sbjct: 180 KAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSG 239
Query: 418 YHHGA-PRLGPQQLYY--GQGTPGLMP-PQAAGYGFQQQVF---PG-LRPGGP 462
Y A P+ + YY Q P P+ G + F PG +RP P
Sbjct: 240 YFMAAIPQTQNRAAYYPTNQLAQLARPSPRWTAQGARPHPFQNMPGAIRPAAP 292
Score = 362 (132.5 bits), Expect = 4.9e-48, Sum P(2) = 4.9e-48
Identities = 86/205 (41%), Positives = 117/205 (57%)
Query: 111 RKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQ 170
R + NV+IKN +D++ L + F FG LS KV D +G+SKG+GFV FE E AQ
Sbjct: 18 RAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 77
Query: 171 NAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKF-------------TNVYVNNLAET 217
A+ +NG +N KQ+YVG ++ ER Q + KF N+YV NL +
Sbjct: 78 KAVDEMNGKELNGKQIYVGRAQKKVER-QTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 136
Query: 218 VTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVW 277
+ DE L+K F FGTITSA VM + G+S+ FGFV F SP+ A AV ++NG K
Sbjct: 137 IDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 195
Query: 278 YVGRAQKRAEREADLRAKFEQERIS 302
YV AQ++ ER+A L ++ Q S
Sbjct: 196 YVALAQRKEERQAHLTNQYMQRMAS 220
Score = 250 (93.1 bits), Expect = 3.1e-31, Sum P(2) = 3.1e-31
Identities = 63/203 (31%), Positives = 116/203 (57%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
++Y+ + +++++ +L +LF + +SV+V D+S +S G+ +V++ +DA A +
Sbjct: 24 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSK-GFGFVSFERHEDAQKAVDE 82
Query: 89 LNFMPINGKPIRIMYSH----RDPSIRK----------SGY-G-NVFIKNLDTSIDNKAL 132
+N +NGK I + + R +++ + Y G N+++KNLD ID++ L
Sbjct: 83 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 142
Query: 133 CDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFV 192
F+ FGT+ S KV ++ G+SKG+GFV F + E A A+ +NG ++ K +YV L
Sbjct: 143 RKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 201
Query: 193 RRQERAQQNVSPKFTNVYVNNLA 215
R++ER Q ++ TN Y+ +A
Sbjct: 202 RKEER-QAHL----TNQYMQRMA 219
Score = 165 (63.1 bits), Expect = 2.6e-71, Sum P(2) = 2.6e-71
Identities = 27/52 (51%), Positives = 45/52 (86%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTK 609
P ++ +MLGE+L+PL++++ P A K+TGMLLE+D +E+LH++ESPE+L++K
Sbjct: 388 PQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHMLESPESLRSK 439
Score = 103 (41.3 bits), Expect = 5.1e-15, Sum P(2) = 5.1e-15
Identities = 24/99 (24%), Positives = 52/99 (52%)
Query: 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAAN 84
Y V+LYV +L+ +++ +L FS + S +V + + S G+ +V +S+P++A
Sbjct: 123 YQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATK 180
Query: 85 AKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNL 123
A +N + KP+ + + R R++ N +++ +
Sbjct: 181 AVTEMNGRIVATKPLYVALAQRKEE-RQAHLTNQYMQRM 218
Score = 43 (20.2 bits), Expect = 3.2e-35, Sum P(2) = 3.2e-35
Identities = 27/134 (20%), Positives = 51/134 (38%)
Query: 409 SPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGPNYIMP- 467
+P +P Y + A PQQ Q + P G Q+ + + P
Sbjct: 335 TPAVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQPAVHVQG-QEPLTASMLASAPPQEQKQ 393
Query: 468 ------YHLQRQVHP---GQRTG----VRRSGNTHQMQQPQFMRNS-NQGIRYLD--NAR 511
+ L + +HP G+ TG + S H ++ P+ +R+ ++ + L A+
Sbjct: 394 MLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAK 453
Query: 512 NGTDQSVVSMVPVP 525
++V + VP
Sbjct: 454 EAAQKAVNNPTGVP 467
>DICTYBASE|DDB_G0290745 [details] [associations]
symbol:pabpc1B "putative polyadenylate binding
protein (PABP)" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0290745 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000154_GR eggNOG:COG0724 EMBL:AAFI02000169
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
RefSeq:XP_001134510.1 ProteinModelPortal:Q1ZXC2 SMR:Q1ZXC2
EnsemblProtists:DDB0233386 GeneID:8627795 KEGG:ddi:DDB_G0290745
OMA:NAIASIH Uniprot:Q1ZXC2
Length = 814
Score = 652 (234.6 bits), Expect = 4.2e-67, Sum P(2) = 4.2e-67
Identities = 184/516 (35%), Positives = 271/516 (52%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQ--VVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
SLYVGDL +VNE L +LFS+V + + S+ VCRD + SLGYAYVN+ N DA A
Sbjct: 185 SLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERAL 244
Query: 87 EALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCK 146
+ LN+ ++GKP RIM+S+RDP+ RK+ GN+F+KNL+ +DN L DTF++FG +LSCK
Sbjct: 245 DTLNYTLVHGKPCRIMWSYRDPTKRKTNVGNIFVKNLEKGVDNAMLYDTFSSFGNILSCK 304
Query: 147 VAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKF 206
V + G SKGYG+V FE ++A+ AI+ +NG LI K + V FV + ER + V K
Sbjct: 305 VEFEK-GISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINVERFVSKVERYK--VENK- 360
Query: 207 TNVYVNNLAETVTDEDLKK-IFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAA----- 260
V+ N E++T E L++ + FG I S I+ D++GKS+ G V F++ + A
Sbjct: 361 --VFFRNADESITIEILQQELSNRFGEIESCILKNDANGKSKGLGLVEFKNQEDAQKILT 418
Query: 261 ---AAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRY-EKLKGANLYLKN 316
A + ++GTT G + + R K + ER + Y +K +L++ N
Sbjct: 419 ESGALIISTIDGTTTVSSNG--GTIEINGKPITIDRIKSKVERFTEYRKKTTDLSLFINN 476
Query: 317 LDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIG 376
+D+SI+ + +KE F++ GTI K++ D++ +KG GF +FS +EA +AL+ +NG G
Sbjct: 477 IDESIDRDLIKEEFAKHGTIIGIKIVQDENARNKGFGFISFSEIQEAQKALDSLNGFTFG 536
Query: 377 RKPLYVAVAQRKEER-KARLQAQFAQIRA---PGGMSPLASGIPGYHHGAPRLGPQQ-LY 431
K + V+ + + + +L +I GG S AS GY P QQ L
Sbjct: 537 SKQIQVSFSNKDNNQINNKLNGNSTKITKNIIQGGAS--ASQYTGY---LPINRYQQHLP 591
Query: 432 YGQGTPGLMPPQAAGYGFQQQVFPGLRPGG--PNYIMPYHLQRQV---HPGQRTGVRRSG 486
+ P M Q + QQQ +P P P HL P R +G
Sbjct: 592 HQHINP--MYTQQPYFPQQQQSSSSSQPSSSQPQPSSPSHLNGNTTTTSPNTRYSKTLNG 649
Query: 487 NT--HQMQQPQFMR---NSNQGIRYLDNARNGTDQS 517
T + PQ N+N N N T QS
Sbjct: 650 TTPFKKSNLPQNANGTNNNNNNNNTNINKSNNTTQS 685
Score = 180 (68.4 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 58/190 (30%), Positives = 95/190 (50%)
Query: 205 KFTNVYVNNLAETVTDEDLKKIFGHFG--TITSAIVMKDSDG-KSRCFGFVNFQSPDAAA 261
+ T++YV +LA V + L ++F G I S V +DS+ +S + +VNF + A
Sbjct: 182 QLTSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAE 241
Query: 262 AAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSI 321
A++ LN T + K + + R+ R K N+++KNL+ +
Sbjct: 242 RALDTLNYTLVHGKPCRI----MWSYRDPTKR------------KTNVGNIFVKNLEKGV 285
Query: 322 NDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLY 381
++ L + FS FG I SCKV ++ G SKG G+ F + A +A+ ++NG +I KP+
Sbjct: 286 DNAMLYDTFSSFGNILSCKVEFEK-GISKGYGYVHFETNDSAEKAIEKVNGTLILGKPIN 344
Query: 382 VAVAQRKEER 391
V K ER
Sbjct: 345 VERFVSKVER 354
Score = 48 (22.0 bits), Expect = 4.2e-67, Sum P(2) = 4.2e-67
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 559 DDRTRMLGEQLYPLV-----ENIEPVHASKVTGMLLEM--DQTEVLHLIES 602
++ T LG ++Y LV NIE A+K+ GM+++ + E+ +I +
Sbjct: 746 EEATETLGSEVYNLVLAKYNNNIEL--AAKIAGMIVDAVPEHKELFEIISN 794
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
Identities = 139/257 (54%), Positives = 181/257 (70%)
Query: 147 VAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQNVSPK 205
V D NG SKGYGFV FE +EAA+ AI+ +NGML+ND++V+VG F R+ER A+ K
Sbjct: 2 VVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK 60
Query: 206 -FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAV 264
FTNVY+ N E + DE LK +FG S VM D GKS+ FGFV+F+ + A AV
Sbjct: 61 EFTNVYIKNFGEDMDDERLKDLFG---PALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 117
Query: 265 EKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDE 324
+++NG N K YVGRAQK+ ER+ +L+ KFEQ + R + +G NLY+KNLDD I+DE
Sbjct: 118 DEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDE 177
Query: 325 KLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384
+L++ FS FGTITS KVM++ G SKG GF FS PEEAT+A+ EMNG+++ KPLYVA+
Sbjct: 178 RLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 236
Query: 385 AQRKEERKARLQAQFAQ 401
AQRKEER+A L Q+ Q
Sbjct: 237 AQRKEERQAHLTNQYMQ 253
Score = 380 (138.8 bits), Expect = 7.8e-35, P = 7.8e-35
Identities = 100/263 (38%), Positives = 143/263 (54%)
Query: 59 VCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI----MYSHRDPSI--RK 112
VC D++ S GY +V++ + A A E +N M +N + + + R+ + R
Sbjct: 3 VC-DEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARA 59
Query: 113 SGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNA 172
+ NV+IKN +D++ L D F G LS KV D +G+SKG+GFV FE E AQ A
Sbjct: 60 KEFTNVYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFERHEDAQKA 116
Query: 173 IKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKF-------------TNVYVNNLAETVT 219
+ +NG +N KQ+YVG ++ ER Q + KF N+YV NL + +
Sbjct: 117 VDEMNGKELNGKQIYVGRAQKKVER-QTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 175
Query: 220 DEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYV 279
DE L+K F FGTITSA VM + G+S+ FGFV F SP+ A AV ++NG K YV
Sbjct: 176 DERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 234
Query: 280 GRAQKRAEREADLRAKFEQERIS 302
AQ++ ER+A L ++ Q S
Sbjct: 235 ALAQRKEERQAHLTNQYMQRMAS 257
Score = 311 (114.5 bits), Expect = 3.9e-27, P = 3.9e-27
Identities = 69/166 (41%), Positives = 107/166 (64%)
Query: 238 VMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFE 297
V+ D +G S+ +GFV+F++ +AA A+EK+NG ND+ +VGR + R EREA+L A+ +
Sbjct: 2 VVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK 60
Query: 298 QERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAF 357
+ N+Y+KN + ++DE+LK+LF G S KVM D+ G SKG GF +F
Sbjct: 61 EF----------TNVYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSF 107
Query: 358 SMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
E+A +A++EMNGK + K +YV AQ+K ER+ L+ +F Q++
Sbjct: 108 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 153
Score = 241 (89.9 bits), Expect = 1.6e-19, P = 1.6e-19
Identities = 64/203 (31%), Positives = 115/203 (56%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
++Y+ + +++++ +L DLF +SV+V D+S +S G+ +V++ +DA A +
Sbjct: 64 NVYIKNFGEDMDDERLKDLFGPA---LSVKVMTDESGKSK-GFGFVSFERHEDAQKAVDE 119
Query: 89 LNFMPINGKPIRIMYSH----RDPSIRK----------SGY-G-NVFIKNLDTSIDNKAL 132
+N +NGK I + + R +++ + Y G N+++KNLD ID++ L
Sbjct: 120 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 179
Query: 133 CDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFV 192
F+ FGT+ S KV ++ G+SKG+GFV F + E A A+ +NG ++ K +YV L
Sbjct: 180 RKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 238
Query: 193 RRQERAQQNVSPKFTNVYVNNLA 215
R++ER Q ++ TN Y+ +A
Sbjct: 239 RKEER-QAHL----TNQYMQRMA 256
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
Identities = 133/250 (53%), Positives = 172/250 (68%)
Query: 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQD 81
PS Y SLYVGDL +V E+ LY+ FS ++S+R+CRD S YAYVN+ + +D
Sbjct: 6 PS-YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKD 64
Query: 82 AANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGT 141
A +A + +NF I GKP+RIM+S RDPS+RKSG GN+F+KNLD SI+NKAL DT +AFG
Sbjct: 65 AEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGN 124
Query: 142 VLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQ 200
+LSC V D NG SKGYGFV FE EAA+ AIK +NGML+N ++V+VG F R+ER A+
Sbjct: 125 ILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAEL 183
Query: 201 NVSPK-FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDA 259
K F NVY+ N E + DE LK +FG FG S VM D GKS+ FGFV+F+ +
Sbjct: 184 GARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243
Query: 260 AAAAVEKLNG 269
A AV+++NG
Sbjct: 244 AQKAVDEMNG 253
Score = 362 (132.5 bits), Expect = 8.7e-33, P = 8.7e-33
Identities = 87/269 (32%), Positives = 152/269 (56%)
Query: 107 DPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAID--SNGQSKGYGFVQFE 164
+PS ++++ +L + L + F+ G +LS ++ D ++G S Y +V F+
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSN-YAYVNFQ 60
Query: 165 NEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLK 224
+ + A++A+ +N +I K V + R + V N++V NL +++ ++ L
Sbjct: 61 HTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG----NIFVKNLDKSINNKALY 116
Query: 225 KIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQK 284
FG I S V+ D +G S+ +GFV+F++ +AA A++K+NG N + +VG+ +
Sbjct: 117 DTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKS 175
Query: 285 RAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD 344
R EREA+L A+ ++ N+Y+KN + ++DE+LK+LF +FG S KVM D
Sbjct: 176 RKEREAELGARAKEF----------PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 345 QHGFSKGSGFAAFSMPEEATRALNEMNGK 373
+ G SKG GF +F E+A +A++EMNGK
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGK 254
Score = 183 (69.5 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 37/88 (42%), Positives = 58/88 (65%)
Query: 311 NLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEM 370
N+++KNLD SIN++ L + S FG I SC V+ D++G SKG GF F E A RA+ +M
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKM 158
Query: 371 NGKMIGRKPLYVAVAQRKEERKARLQAQ 398
NG ++ + ++V + ++ER+A L A+
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGAR 186
>RGD|1305015 [details] [associations]
symbol:Pabpc4 "poly(A) binding protein, cytoplasmic 4"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0008143
"poly(A) RNA binding" evidence=ISO] [GO:0008266 "poly(U) RNA
binding" evidence=ISO] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0017130 "poly(C) RNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:1305015 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 Gene3D:1.10.1900.10
SUPFAM:SSF63570 EMBL:BC088337 IPI:IPI00780433 UniGene:Rn.201330
ProteinModelPortal:Q5I0G7 PRIDE:Q5I0G7 UCSC:RGD:1305015
InParanoid:Q5I0G7 ArrayExpress:Q5I0G7 Genevestigator:Q5I0G7
Uniprot:Q5I0G7
Length = 415
Score = 424 (154.3 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
Identities = 106/216 (49%), Positives = 136/216 (62%)
Query: 263 AVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQ---ERISRYEKLKGANLYLKNLDD 319
AVE++NG + K +VGRAQK+ ER+A+L+ KFEQ ERISRY+ G NLY+KNLDD
Sbjct: 2 AVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQ---GVNLYIKNLDD 58
Query: 320 SINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKP 379
+I+DEKL++ FS FG+ITS KVM++ G SKG GF FS PEEAT+A+ EMNG+++G KP
Sbjct: 59 TIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 117
Query: 380 LYVAVAQRKEERKARLQAQFAQ----IRA-PGG--MSPLASGIPGYHHGA-PRLGPQQLY 431
LYVA+AQRKEERKA L Q+ Q +RA P ++ GY A P+ + Y
Sbjct: 118 LYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPY 177
Query: 432 YGQGTPGLMPPQAAGY-GFQQQVFPG----LRPGGP 462
Y M P G + Q F G LR GP
Sbjct: 178 YTPNQLAQMRPNPRWQQGGRPQGFQGMPSALRQSGP 213
Score = 219 (82.2 bits), Expect = 5.6e-28, Sum P(3) = 5.6e-28
Identities = 59/156 (37%), Positives = 88/156 (56%)
Query: 172 AIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKF-------------TNVYVNNLAETV 218
A++ +NG ++ K ++VG ++ ER Q + KF N+Y+ NL +T+
Sbjct: 2 AVEEMNGKEMSGKSIFVGRAQKKVER-QAELKRKFEQLKQERISRYQGVNLYIKNLDDTI 60
Query: 219 TDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWY 278
DE L+K F FG+ITSA VM + DG+S+ FGFV F SP+ A AV ++NG K Y
Sbjct: 61 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 119
Query: 279 VGRAQKRAEREADLRAKFEQERISRYEKLKGANLYL 314
V AQ++ ER+A L ++ Q R++ L AN L
Sbjct: 120 VALAQRKEERKAHLTNQYMQ-RVAGMRALP-ANAIL 153
Score = 185 (70.2 bits), Expect = 7.4e-24, Sum P(3) = 7.4e-24
Identities = 39/99 (39%), Positives = 62/99 (62%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKML 176
N++IKNLD +ID++ L F+ FG++ S KV ++ +G+SKG+GFV F + E A A+ +
Sbjct: 50 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 108
Query: 177 NGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLA 215
NG ++ K +YV L R++ER TN Y+ +A
Sbjct: 109 NGRIVGSKPLYVALAQRKEERKAH-----LTNQYMQRVA 142
Score = 166 (63.5 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
Identities = 29/77 (37%), Positives = 52/77 (67%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTKXXXXXXXX 617
P ++ +MLGE+L+PL++ + A K+TGMLLE+D +E+LH++ESPE+L++K
Sbjct: 335 PQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 394
Query: 618 XXXXXRSDVNEKLGSLA 634
+ + +K+G++A
Sbjct: 395 QAHHAKKEAAQKVGTVA 411
Score = 113 (44.8 bits), Expect = 3.4e-16, Sum P(3) = 3.4e-16
Identities = 25/101 (24%), Positives = 53/101 (52%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
S Y V+LY+ +L+ +++ +L FS + S +V + + S G+ +V +S+P++A
Sbjct: 44 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEA 101
Query: 83 ANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNL 123
A +N + KP+ + + R RK+ N +++ +
Sbjct: 102 TKAVTEMNGRIVGSKPLYVALAQRKEE-RKAHLTNQYMQRV 141
Score = 89 (36.4 bits), Expect = 9.6e-14, Sum P(3) = 9.6e-14
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 365 RALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
+A+ EMNGK + K ++V AQ+K ER+A L+ +F Q++
Sbjct: 1 KAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLK 39
Score = 37 (18.1 bits), Expect = 5.6e-28, Sum P(3) = 5.6e-28
Identities = 27/90 (30%), Positives = 35/90 (38%)
Query: 404 APGGMSPLASGIPGYHHGAPRLG---PQQL---YYGQGTP--GLMPPQAAGYGFQQQVFP 455
AP G +P + G+P A R+G P +L + G G GL +G G V P
Sbjct: 221 APTGNAPASRGLPTT---AQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSG-GVPTAV-P 275
Query: 456 GLRP------GGPNYIMPYHLQRQV---HP 476
L P P + PY V HP
Sbjct: 276 NLAPRATVAAAAPRAVAPYKYASNVRSPHP 305
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 116/217 (53%), Positives = 151/217 (69%)
Query: 187 YVGLFVRRQER-AQQNVSPK-FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDG 244
+VG F R+ER A+ K FTNVY+ N E + DE LK +FG FG S VM D G
Sbjct: 2 FVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG 61
Query: 245 KSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRY 304
KS+ FGFV+F+ + A AV+++NG N K YVGRAQK+ ER+ +L+ KFEQ + R
Sbjct: 62 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI 121
Query: 305 EKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEAT 364
+ +G NLY+KNLDD I+DE+L++ FS FGTITS KVM++ G SKG GF FS PEEAT
Sbjct: 122 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEAT 180
Query: 365 RALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQ 401
+A+ EMNG+++ KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 181 KAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 217
Score = 366 (133.9 bits), Expect = 3.1e-33, P = 3.1e-33
Identities = 87/205 (42%), Positives = 117/205 (57%)
Query: 111 RKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQ 170
R + NV+IKN +D++ L D F FG LS KV D +G+SKG+GFV FE E AQ
Sbjct: 19 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 78
Query: 171 NAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKF-------------TNVYVNNLAET 217
A+ +NG +N KQ+YVG ++ ER Q + KF N+YV NL +
Sbjct: 79 KAVDEMNGKELNGKQIYVGRAQKKVER-QTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 137
Query: 218 VTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVW 277
+ DE L+K F FGTITSA VM + G+S+ FGFV F SP+ A AV ++NG K
Sbjct: 138 IDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 196
Query: 278 YVGRAQKRAEREADLRAKFEQERIS 302
YV AQ++ ER+A L ++ Q S
Sbjct: 197 YVALAQRKEERQAHLTNQYMQRMAS 221
Score = 254 (94.5 bits), Expect = 6.3e-21, P = 6.3e-21
Identities = 64/203 (31%), Positives = 116/203 (57%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
++Y+ + +++++ +L DLF + +SV+V D+S +S G+ +V++ +DA A +
Sbjct: 25 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSK-GFGFVSFERHEDAQKAVDE 83
Query: 89 LNFMPINGKPIRIMYSH----RDPSIRK----------SGY-G-NVFIKNLDTSIDNKAL 132
+N +NGK I + + R +++ + Y G N+++KNLD ID++ L
Sbjct: 84 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 143
Query: 133 CDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFV 192
F+ FGT+ S KV ++ G+SKG+GFV F + E A A+ +NG ++ K +YV L
Sbjct: 144 RKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 202
Query: 193 RRQERAQQNVSPKFTNVYVNNLA 215
R++ER Q ++ TN Y+ +A
Sbjct: 203 RKEER-QAHL----TNQYMQRMA 220
Score = 251 (93.4 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 53/126 (42%), Positives = 81/126 (64%)
Query: 278 YVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTIT 337
+VGR + R EREA+L A+ ++ N+Y+KN + ++DE+LK+LF +FG
Sbjct: 2 FVGRFKSRKEREAELGARAKEF----------TNVYIKNFGEDMDDERLKDLFGKFGPAL 51
Query: 338 SCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQA 397
S KVM D+ G SKG GF +F E+A +A++EMNGK + K +YV AQ+K ER+ L+
Sbjct: 52 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKR 111
Query: 398 QFAQIR 403
+F Q++
Sbjct: 112 KFEQMK 117
>UNIPROTKB|Q5JQF8 [details] [associations]
symbol:PABPC1L2A "Polyadenylate-binding protein 1-like 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471104 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
HOGENOM:HOG000217922 HSSP:P11940 EMBL:AL662864 EMBL:BC041956
EMBL:BC136492 IPI:IPI00217142 RefSeq:NP_001012995.1
RefSeq:NP_001035971.1 UniGene:Hs.450320 UniGene:Hs.567854
ProteinModelPortal:Q5JQF8 SMR:Q5JQF8 PhosphoSite:Q5JQF8
PaxDb:Q5JQF8 PRIDE:Q5JQF8 Ensembl:ENST00000373519
Ensembl:ENST00000373521 Ensembl:ENST00000453389
Ensembl:ENST00000538388 GeneID:340529 GeneID:645974 KEGG:hsa:340529
KEGG:hsa:645974 UCSC:uc004ebf.3 CTD:340529 CTD:645974
GeneCards:GC0XM072297 GeneCards:GC0XP072223 H-InvDB:HIX0056425
HGNC:HGNC:27989 HGNC:HGNC:31852 HPA:HPA041573 neXtProt:NX_Q5JQF8
PharmGKB:PA162398594 InParanoid:Q5JQF8 OMA:RIMYSHC
OrthoDB:EOG4QVCCZ NextBio:97904 Bgee:Q5JQF8 CleanEx:HS_PABPC1L2A
CleanEx:HS_PABPC1L2B Genevestigator:Q5JQF8 Uniprot:Q5JQF8
Length = 200
Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
Identities = 104/196 (53%), Positives = 138/196 (70%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
SLYVGDL V E+ LY+ FS ++S+R+CRD+ R SLGYAYVNY P DA A E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LNF I G+P+RIM+S RDPS+RKSG GNVFIKNL +IDNKAL + F+AFG +LSCKVA
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 149 IDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQNV-SPKF 206
D G KGYGFV F+ +E+A+ AI ++NGM +N ++++VG F +ER A++ + +
Sbjct: 123 CDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQS 181
Query: 207 TNVYVNNLAETVTDED 222
T+ V + E TDE+
Sbjct: 182 TSADVKDFEED-TDEE 196
Score = 203 (76.5 bits), Expect = 2.1e-15, P = 2.1e-15
Identities = 51/176 (28%), Positives = 91/176 (51%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
++++ +L + L + F+ G +LS ++ D +S GY +V ++ A+ A++
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITS 235
LN +I + V + R + V NV++ NL +T+ ++ L IF FG I S
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVG----NVFIKNLGKTIDNKALYNIFSAFGNILS 118
Query: 236 AIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREAD 291
V D G + +GFV+FQ ++A A++ +NG N + +VGR + EREA+
Sbjct: 119 CKVACDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 197 (74.4 bits), Expect = 9.2e-15, P = 9.2e-15
Identities = 61/187 (32%), Positives = 94/187 (50%)
Query: 208 NVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVEK 266
++YV +L VT+ L + F G I S + +D +S + +VN+Q P A A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE- 61
Query: 267 LNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKL 326
T N D + GR +R + Q R K N+++KNL +I+++ L
Sbjct: 62 ---TLNFDVI--KGRP---------VRIMWSQ-RDPSLRKSGVGNVFIKNLGKTIDNKAL 106
Query: 327 KELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386
+FS FG I SCKV D+ G KG GF F E A RA++ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 165
Query: 387 RKEERKA 393
+ER+A
Sbjct: 166 SHKEREA 172
>RGD|1566367 [details] [associations]
symbol:Pabpc1l2a "poly(A) binding protein, cytoplasmic 1-like
2A" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1566367 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00640000091232
IPI:IPI00769098 Ensembl:ENSRNOT00000029100 Uniprot:F1M8Y9
Length = 200
Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 99/169 (58%), Positives = 124/169 (73%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
SLYVGDL V ES LY+ FS ++S+R+CRD+ R SLGYAYVNY P DA A E
Sbjct: 3 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 62
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
+NF ING+P+RIM+S RDPS+RKSG GNVFIKNL +IDNKAL + F+AFG +LSCKVA
Sbjct: 63 MNFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 149 IDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER 197
D G KGYGFV F+ +E+A+ AI LNGM +N ++++VG F +ER
Sbjct: 123 CDEKGP-KGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKER 170
Score = 210 (79.0 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 60/209 (28%), Positives = 106/209 (50%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
++++ +L + L + F+ G +LS ++ D +S GY +V ++ A+ A++
Sbjct: 3 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 62
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITS 235
+N +IN + V + R + V NV++ NL +T+ ++ L IF FG I S
Sbjct: 63 MNFDVINGRPVRIMWSQRDPSLRKSGVG----NVFIKNLGKTIDNKALYNIFSAFGNILS 118
Query: 236 AIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAK 295
V D G + +GFV+FQ ++A A++ LNG N + +VGR + EREA+ R
Sbjct: 119 CKVACDEKGP-KGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAE-RGA 176
Query: 296 FEQERISRYEKLKGANLYLKNLDDSINDE 324
+ ++ S A+ K+ DD +DE
Sbjct: 177 WARQSTS-------ADF--KDFDDDSDDE 196
Score = 195 (73.7 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 58/187 (31%), Positives = 94/187 (50%)
Query: 208 NVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVEK 266
++YV +L VT+ L + F G I S + +D +S + +VN+Q P A A+E
Sbjct: 3 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 62
Query: 267 LNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKL 326
+N N + + +Q R+ LR K N+++KNL +I+++ L
Sbjct: 63 MNFDVINGRPVRIMWSQ----RDPSLR------------KSGVGNVFIKNLGKTIDNKAL 106
Query: 327 KELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386
+FS FG I SCKV D+ G KG GF F E A RA++ +NG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFK 165
Query: 387 RKEERKA 393
+ER+A
Sbjct: 166 SHKEREA 172
>UNIPROTKB|G3MZ94 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 OMA:DSANKVY GeneID:521086
KEGG:bta:521086 EMBL:DAAA02072607 RefSeq:XP_003588203.1
Ensembl:ENSBTAT00000064260 Uniprot:G3MZ94
Length = 200
Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 104/196 (53%), Positives = 137/196 (69%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
SLYVGDL V E+ LY+ FS ++S+R+CRD+ R SLGYAYVNY P DA A E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LNF I G+P+RIM+S RDPS+RKSG GNVFIKNL +IDNKAL + F+AFG +LSCKVA
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 149 IDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQNV-SPKF 206
D G KGYGFV F+ +E+A+ AI +NGM +N ++++VG F +ER A++ + +
Sbjct: 123 CDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQS 181
Query: 207 TNVYVNNLAETVTDED 222
T+ V + E TDE+
Sbjct: 182 TSADVKDFEED-TDEE 196
Score = 204 (76.9 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 51/176 (28%), Positives = 91/176 (51%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
++++ +L + L + F+ G +LS ++ D +S GY +V ++ A+ A++
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITS 235
LN +I + V + R + V NV++ NL +T+ ++ L IF FG I S
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVG----NVFIKNLGKTIDNKALYNIFSAFGNILS 118
Query: 236 AIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREAD 291
V D G + +GFV+FQ ++A A++ +NG N + +VGR + EREA+
Sbjct: 119 CKVACDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 198 (74.8 bits), Expect = 7.2e-15, P = 7.2e-15
Identities = 61/187 (32%), Positives = 94/187 (50%)
Query: 208 NVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVEK 266
++YV +L VT+ L + F G I S + +D +S + +VN+Q P A A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE- 61
Query: 267 LNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKL 326
T N D + GR +R + Q R K N+++KNL +I+++ L
Sbjct: 62 ---TLNFDVI--KGRP---------VRIMWSQ-RDPSLRKSGVGNVFIKNLGKTIDNKAL 106
Query: 327 KELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386
+FS FG I SCKV D+ G KG GF F E A RA++ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 387 RKEERKA 393
+ER+A
Sbjct: 166 SHKEREA 172
>UNIPROTKB|F1RPL9 [details] [associations]
symbol:LOC100623240 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 EMBL:FP236342 RefSeq:XP_003135232.1
RefSeq:XP_003360416.1 Ensembl:ENSSSCT00000023519
Ensembl:ENSSSCT00000025081 GeneID:100525442 GeneID:100623240
KEGG:ssc:100525442 KEGG:ssc:100623240 OMA:DSANKVY Uniprot:F1RPL9
Length = 200
Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 104/196 (53%), Positives = 137/196 (69%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
SLYVGDL V E+ LY+ FS ++S+R+CRD+ R SLGYAYVNY P DA A E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LNF I G+P+RIM+S RDPS+RKSG GNVFIKNL +IDNKAL + F+AFG +LSCKVA
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 149 IDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQNV-SPKF 206
D G KGYGFV F+ +E+A+ AI +NGM +N ++++VG F +ER A++ + +
Sbjct: 123 CDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQS 181
Query: 207 TNVYVNNLAETVTDED 222
T+ V + E TDE+
Sbjct: 182 TSADVKDFEED-TDEE 196
Score = 204 (76.9 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 51/176 (28%), Positives = 91/176 (51%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
++++ +L + L + F+ G +LS ++ D +S GY +V ++ A+ A++
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITS 235
LN +I + V + R + V NV++ NL +T+ ++ L IF FG I S
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVG----NVFIKNLGKTIDNKALYNIFSAFGNILS 118
Query: 236 AIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREAD 291
V D G + +GFV+FQ ++A A++ +NG N + +VGR + EREA+
Sbjct: 119 CKVACDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 198 (74.8 bits), Expect = 7.2e-15, P = 7.2e-15
Identities = 61/187 (32%), Positives = 94/187 (50%)
Query: 208 NVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVEK 266
++YV +L VT+ L + F G I S + +D +S + +VN+Q P A A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE- 61
Query: 267 LNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKL 326
T N D + GR +R + Q R K N+++KNL +I+++ L
Sbjct: 62 ---TLNFDVI--KGRP---------VRIMWSQ-RDPSLRKSGVGNVFIKNLGKTIDNKAL 106
Query: 327 KELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386
+FS FG I SCKV D+ G KG GF F E A RA++ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 387 RKEERKA 393
+ER+A
Sbjct: 166 SHKEREA 172
>UNIPROTKB|G3MYW4 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 EMBL:DAAA02072604
RefSeq:XP_002700050.1 RefSeq:XP_003584787.1 RefSeq:XP_599343.3
ProteinModelPortal:G3MYW4 Ensembl:ENSBTAT00000066058 GeneID:521086
GeneID:784438 KEGG:bta:521086 KEGG:bta:784438 OMA:ILSIRLC
NextBio:20873237 Uniprot:G3MYW4
Length = 200
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 104/196 (53%), Positives = 137/196 (69%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
SLYVGDL V E+ LY+ FS ++S+R+CRD+ R SLGYAYVNY P DA A E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LNF I G+P+RIM+S RDPS+RKSG GNVFIKNL +IDNKAL + F+AFG +LSCKVA
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 149 IDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQNV-SPKF 206
D G KGYGFV F+ +E+A+ AI +NGM +N ++++VG F +ER A++ + +
Sbjct: 123 CDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQS 181
Query: 207 TNVYVNNLAETVTDED 222
T+ V + E TDE+
Sbjct: 182 TSADVKDFEED-TDEE 196
Score = 202 (76.2 bits), Expect = 2.7e-15, P = 2.7e-15
Identities = 51/176 (28%), Positives = 91/176 (51%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
++++ +L + L + F+ G +LS ++ D +S GY +V ++ A+ A++
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITS 235
LN +I + V + R + V NV++ NL +T+ ++ L IF FG I S
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVG----NVFIKNLGKTIDNKALYNIFSAFGNILS 118
Query: 236 AIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREAD 291
V D G + +GFV+FQ ++A A++ +NG N + +VGR + EREA+
Sbjct: 119 CKVACDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 196 (74.1 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 61/187 (32%), Positives = 94/187 (50%)
Query: 208 NVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVEK 266
++YV +L VT+ L + F G I S + +D +S + +VN+Q P A A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALE- 61
Query: 267 LNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKL 326
T N D + GR +R + Q R K N+++KNL +I+++ L
Sbjct: 62 ---TLNFDVI--KGRP---------VRIMWSQ-RDPSLRKSGVGNVFIKNLGKTIDNKAL 106
Query: 327 KELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386
+FS FG I SCKV D+ G KG GF F E A RA++ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 387 RKEERKA 393
+ER+A
Sbjct: 166 SHKEREA 172
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 100/216 (46%), Positives = 148/216 (68%)
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQ---NVSPKFTNVYVNNLAETVTDEDLKKIFGHFGT 232
+NG+ +N++QVYVG F +ERA + FTNV+V N+ + + DE LK++F +G
Sbjct: 1 MNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP 60
Query: 233 ITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADL 292
S V++D+ GKS+ FGFV +++ +AA AV L+G + + KV YVGRAQK+ ER A+L
Sbjct: 61 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAEL 120
Query: 293 RAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGS 352
R +FE+ R+ + G +Y+KNLD++INDEKLKE FS FG+I+ KVM++ G KG
Sbjct: 121 RRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGF 179
Query: 353 GFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRK 388
G FS EEAT+A++EMNG+++G KPL+V + Q +
Sbjct: 180 GVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 215
Score = 284 (105.0 bits), Expect = 3.5e-24, P = 3.5e-24
Identities = 69/188 (36%), Positives = 109/188 (57%)
Query: 112 KSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQN 171
++ + NVF+KN+ ID++ L + F +G S KV D++G+SKG+GFV++E EAAQ
Sbjct: 31 RATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQK 90
Query: 172 AIKMLNGMLINDKQVYVGLFVRRQERA------------QQNVSPKFTNVYVNNLAETVT 219
A+ L+G I+ K +YVG ++ ER ++ P +Y+ NL ET+
Sbjct: 91 AVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIN 150
Query: 220 DEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYV 279
DE LK+ F FG+I+ A VM + G+ + FG V F S + A AV+++NG K +V
Sbjct: 151 DEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 209
Query: 280 --GRAQKR 285
G+A++R
Sbjct: 210 TLGQARRR 217
Score = 242 (90.2 bits), Expect = 1.3e-19, P = 1.3e-19
Identities = 59/152 (38%), Positives = 87/152 (57%)
Query: 267 LNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKL 326
+NG N++ YVGR + ER A++R + ++ N+++KN+ D I+DEKL
Sbjct: 1 MNGVRLNNRQVYVGRFKFPEERAAEVRTR---------DRATFTNVFVKNIGDDIDDEKL 51
Query: 327 KELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386
KELF E+G S KV+ D G SKG GF + E A +A+ +++GK I K LYV AQ
Sbjct: 52 KELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ 111
Query: 387 RKEERKARLQAQFAQIRAPGGMSPLASGIPGY 418
+K ER A L+ +F ++R P G+P Y
Sbjct: 112 KKIERLAELRRRFERLRLKEKSRP--PGVPIY 141
Score = 177 (67.4 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 51/178 (28%), Positives = 95/178 (53%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+++V ++ ++++ +L +LF + SV+V RD S +S G+ +V Y + A A
Sbjct: 36 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSK-GFGFVRYETHEAAQKAVLD 94
Query: 89 LNFMPINGKPIRIMYSHRD----PSIR----------KSGYGNV--FIKNLDTSIDNKAL 132
L+ I+GK + + + + +R KS V +IKNLD +I+++ L
Sbjct: 95 LHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKL 154
Query: 133 CDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGL 190
+ F++FG++ KV ++ GQ KG+G V F + E A A+ +NG ++ K ++V L
Sbjct: 155 KEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTL 211
>FB|FBgn0035016 [details] [associations]
symbol:CG4612 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
NextBio:806022 Uniprot:Q9W158
Length = 307
Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
Identities = 87/186 (46%), Positives = 132/186 (70%)
Query: 116 GNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKM 175
G ++IKNL+ SIDNKA+ DTF+ FG +L+C VA D +G S+GYGFV F++EEAA+ AI+
Sbjct: 113 GKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEK 172
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITS 235
+NGML N+++V+V F+ R++R Q+ + F N+YV NL+E T++ L+++F +G ITS
Sbjct: 173 VNGMLCNNQKVHVVKFIPRRDREQEKAT-HFKNLYVKNLSEEFTEQHLREMFEPYGRITS 231
Query: 236 AIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNND-KVWYVGRAQKRAEREADLRA 294
+M D +G+SR FGFV +++P +A AAV L+G D K YV RA +AER+ ++
Sbjct: 232 HKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINR 291
Query: 295 KFEQER 300
K E+ +
Sbjct: 292 KLEERK 297
Score = 319 (117.4 bits), Expect = 5.1e-28, P = 5.1e-28
Identities = 76/203 (37%), Positives = 117/203 (57%)
Query: 201 NVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAA 260
N SP +Y+ NL ++ ++ + F FG I + V KD DG SR +GFV+F S +AA
Sbjct: 107 NSSPDSGKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAA 166
Query: 261 AAAVEKLNGTT-NNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDD 319
AA+EK+NG NN KV +V + R +RE QE+ + ++ NLY+KNL +
Sbjct: 167 RAAIEKVNGMLCNNQKV-HVVKFIPRRDRE--------QEKATHFK-----NLYVKNLSE 212
Query: 320 SINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIG-RK 378
++ L+E+F +G ITS K+M+D+ G S+ GF A+ P+ A A+ ++GK +G K
Sbjct: 213 EFTEQHLREMFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNK 272
Query: 379 PLYVAVAQRKEERKARLQAQFAQ 401
LYVA A K ER+ + + +
Sbjct: 273 FLYVARALSKAERQQEINRKLEE 295
Score = 229 (85.7 bits), Expect = 3.2e-18, P = 3.2e-18
Identities = 52/180 (28%), Positives = 100/180 (55%)
Query: 30 LYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL 89
+Y+ +LE++++ +YD FS +++ V +D+ S GY +V++ + + A A E +
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSR-GYGFVHFDSEEAARAAIEKV 173
Query: 90 NFMPINGKPIRIM--YSHRDPSIRKSG-YGNVFIKNLDTSIDNKALCDTFAAFGTVLSCK 146
N M N + + ++ RD K+ + N+++KNL + L + F +G + S K
Sbjct: 174 NGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHK 233
Query: 147 VAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLIND-KQVYVGLFVRRQERAQQNVSPK 205
+ +D G+S+ +GFV +EN ++A A+ L+G + D K +YV + + ER QQ ++ K
Sbjct: 234 LMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAER-QQEINRK 292
>UNIPROTKB|F1M0P4 [details] [associations]
symbol:F1M0P4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570 GO:GO:2000623
IPI:IPI00778598 ProteinModelPortal:F1M0P4
Ensembl:ENSRNOT00000035783 OMA:KHKFEQM Uniprot:F1M0P4
Length = 338
Score = 302 (111.4 bits), Expect = 1.7e-39, Sum P(2) = 1.7e-39
Identities = 84/210 (40%), Positives = 115/210 (54%)
Query: 283 QKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVM 342
QK+ E + +L+ KFEQ + + + +G NLY+KNLDDSI DE+L++ FS FGTITS KVM
Sbjct: 1 QKKVEWQTELKHKFEQMKQDKITRYQGVNLYVKNLDDSI-DERLRKQFSPFGTITSAKVM 59
Query: 343 VDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQF--- 399
++ G SK GF FS EEA +A+ EMNGK++ KPLYVA+AQ KEE + L Q+
Sbjct: 60 MEG-GHSKRFGFICFSSHEEAFKAVMEMNGKIVATKPLYVALAQHKEECQTHLTNQYMHR 118
Query: 400 -AQIRA-PGGM-SPLASGIP-GYHHGA-PRLGPQQLYYGQGTPGLMPPQAA--GYGFQQQ 452
A +R P + +P P GY A P+ YY + P G +
Sbjct: 119 MASVRTVPNPVINPYQPAPPSGYFMAAIPQTQNHAAYYPPSQIAQLRPSPCWIAQGARPH 178
Query: 453 VF---PG-LRPGGPNYIMPYHLQRQVHPGQ 478
F PG + P P P+ + +V P Q
Sbjct: 179 PFQNMPGAICPAAPR--PPFSMVPRVMPTQ 206
Score = 166 (63.5 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 41/114 (35%), Positives = 65/114 (57%)
Query: 106 RDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFEN 165
+D R G N+++KNLD SID + L F+ FGT+ S KV ++ G SK +GF+ F +
Sbjct: 19 QDKITRYQGV-NLYVKNLDDSIDER-LRKQFSPFGTITSAKVMMEG-GHSKRFGFICFSS 75
Query: 166 EEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVT 219
E A A+ +NG ++ K +YV L + +E Q ++ TN Y++ +A T
Sbjct: 76 HEEAFKAVMEMNGKIVATKPLYVAL-AQHKEECQTHL----TNQYMHRMASVRT 124
Score = 153 (58.9 bits), Expect = 4.6e-19, Sum P(2) = 4.6e-19
Identities = 40/103 (38%), Positives = 60/103 (58%)
Query: 196 ERAQQNVSPKF--TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVN 253
E+ +Q+ ++ N+YV NL +++ DE L+K F FGTITSA VM + G S+ FGF+
Sbjct: 15 EQMKQDKITRYQGVNLYVKNLDDSI-DERLRKQFSPFGTITSAKVMMEG-GHSKRFGFIC 72
Query: 254 FQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKF 296
F S + A AV ++NG K YV AQ + E + L ++
Sbjct: 73 FSSHEEAFKAVMEMNGKIVATKPLYVALAQHKEECQTHLTNQY 115
Score = 149 (57.5 bits), Expect = 1.7e-39, Sum P(2) = 1.7e-39
Identities = 26/52 (50%), Positives = 41/52 (78%)
Query: 558 PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTK 609
P ++ +MLGE L+PL++ + P A K+TGMLLE+D +E+LH++ SPE+L +K
Sbjct: 257 PQEQKQMLGEWLFPLIQVLHPSPAGKITGMLLEIDNSELLHMLASPESLHSK 308
Score = 74 (31.1 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
Identities = 22/86 (25%), Positives = 46/86 (53%)
Query: 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRD--QSKRSSLGYAYVNYSNPQDA 82
Y V+LYV +L+ +++E +L FS + S +V + SKR + ++ +S+ ++A
Sbjct: 25 YQGVNLYVKNLDDSIDE-RLRKQFSPFGTITSAKVMMEGGHSKR----FGFICFSSHEEA 79
Query: 83 ANAKEALNFMPINGKPIRI-MYSHRD 107
A +N + KP+ + + H++
Sbjct: 80 FKAVMEMNGKIVATKPLYVALAQHKE 105
>UNIPROTKB|B1ANR1 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000217922 EMBL:AL845289 UniGene:Hs.169900 HGNC:HGNC:8557
ChiTaRS:PABPC4 IPI:IPI00644016 SMR:B1ANR1 STRING:B1ANR1
Ensembl:ENST00000451091 Uniprot:B1ANR1
Length = 129
Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 80/124 (64%), Positives = 92/124 (74%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
S Y SLYVGDL +V E+ LY+ FS V+S+RVCRD R SLGYAYVN+ P DA
Sbjct: 6 SSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 83 ANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTV 142
A + +NF I GKPIRIM+S RDPS+RKSG GNVFIKNLD SIDNKAL DTF+AFG +
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 143 LSCK 146
LSCK
Sbjct: 126 LSCK 129
Score = 123 (48.4 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 42/134 (31%), Positives = 65/134 (48%)
Query: 208 NVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVEK 266
++YV +L VT+ L + F G + S V +D +S + +VNFQ P A A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 267 LNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKL 326
+N K + +Q R+ LR K N+++KNLD SI+++ L
Sbjct: 72 MNFDVIKGKPIRIMWSQ----RDPSLR------------KSGVGNVFIKNLDKSIDNKAL 115
Query: 327 KELFSEFGTITSCK 340
+ FS FG I SCK
Sbjct: 116 YDTFSAFGNILSCK 129
Score = 113 (44.8 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 31/120 (25%), Positives = 58/120 (48%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
++++ +L + + L + F+ G VLS +V D +S GY +V F+ A+ A+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITS 235
+N +I K + + R + V NV++ NL +++ ++ L F FG I S
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----NVFIKNLDKSIDNKALYDTFSAFGNILS 127
Score = 104 (41.7 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 310 ANLYLKNLDDSINDEKLKELFSEFGTITS---CKVMVDQHGFSKGSGFAAFSMPEEATRA 366
A+LY+ +L + + L E FS G + S C+ M+ + S G + F P +A RA
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRR--SLGYAYVNFQQPADAERA 68
Query: 367 LNEMNGKMIGRKPLYVAVAQR 387
L+ MN +I KP+ + +QR
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQR 89
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 389 (142.0 bits), Expect = 7.0e-38, Sum P(2) = 7.0e-38
Identities = 79/154 (51%), Positives = 107/154 (69%)
Query: 147 VAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER-AQQNVSPK 205
V D NG SKGY FV FE +EAA AI+ +NGML+ND++V+VG F R+ER A+ K
Sbjct: 43 VVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAK 101
Query: 206 -FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAV 264
FTNVY+ N E V DE LK++F FG S VM+D +GKS+ FGFV+++ + A AV
Sbjct: 102 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 161
Query: 265 EKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQ 298
E++NG + K+ +VGRAQK+ ER+A+L+ KFEQ
Sbjct: 162 EEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 195
Score = 333 (122.3 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 73/167 (43%), Positives = 109/167 (65%)
Query: 237 IVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKF 296
IV+ D +G S+ + FV+F++ +AA A+EK+NG ND+ +VGR + R EREA+L AK
Sbjct: 42 IVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKA 100
Query: 297 EQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAA 356
++ N+Y+KN + ++DE LKELFS+FG S KVM D +G SKG GF +
Sbjct: 101 KEF----------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVS 150
Query: 357 FSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
+ E+A +A+ EMNGK I K ++V AQ+K ER+A L+ +F Q++
Sbjct: 151 YEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 197
Score = 220 (82.5 bits), Expect = 3.0e-17, P = 3.0e-17
Identities = 54/154 (35%), Positives = 87/154 (56%)
Query: 59 VCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI-MYSHRDPSIRKSG--- 114
VC D++ S GYA+V++ + A A E +N M +N + + + + R + G
Sbjct: 44 VC-DEN--GSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKA 100
Query: 115 --YGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNA 172
+ NV+IKN +D+++L + F+ FG LS KV D NG+SKG+GFV +E E A A
Sbjct: 101 KEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKA 160
Query: 173 IKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKF 206
++ +NG I+ K ++VG ++ ER Q + KF
Sbjct: 161 VEEMNGKEISGKIIFVGRAQKKVER-QAELKRKF 193
Score = 119 (46.9 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 25/71 (35%), Positives = 44/71 (61%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
++Y+ + + V++ L +LFSQ + +SV+V RD + +S G+ +V+Y +DA A E
Sbjct: 105 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSK-GFGFVSYEKHEDANKAVEE 163
Query: 89 LNFMPINGKPI 99
+N I+GK I
Sbjct: 164 MNGKEISGKII 174
Score = 37 (18.1 bits), Expect = 7.0e-38, Sum P(2) = 7.0e-38
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 139 FGTVLSCK 146
FG +LSCK
Sbjct: 2 FGNILSCK 9
>UNIPROTKB|E5RJB9 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI01013146
ProteinModelPortal:E5RJB9 SMR:E5RJB9 Ensembl:ENST00000521865
ArrayExpress:E5RJB9 Bgee:E5RJB9 Uniprot:E5RJB9
Length = 129
Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
Identities = 78/125 (62%), Positives = 93/125 (74%)
Query: 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQD 81
PS Y SLYVGDL +V E+ LY+ FS ++S+RVCRD R SLGYAYVN+ P D
Sbjct: 6 PS-YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 82 AANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGT 141
A A + +NF I GKP+RIM+S RDPS+RKSG GN+FIKNLD SIDNKAL DTF+AFG
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 142 VLSCK 146
+LSCK
Sbjct: 125 ILSCK 129
Score = 124 (48.7 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 43/134 (32%), Positives = 65/134 (48%)
Query: 208 NVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVEK 266
++YV +L VT+ L + F G I S V +D +S + +VNFQ P A A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 267 LNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKL 326
+N K + +Q R+ LR K N+++KNLD SI+++ L
Sbjct: 72 MNFDVIKGKPVRIMWSQ----RDPSLR------------KSGVGNIFIKNLDKSIDNKAL 115
Query: 327 KELFSEFGTITSCK 340
+ FS FG I SCK
Sbjct: 116 YDTFSAFGNILSCK 129
Score = 114 (45.2 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 32/130 (24%), Positives = 60/130 (46%)
Query: 107 DPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFEN 165
+PS ++++ +L + L + F+ G +LS +V D +S GY +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 166 EEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKK 225
A+ A+ +N +I K V + R + V N+++ NL +++ ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG----NIFIKNLDKSIDNKALYD 117
Query: 226 IFGHFGTITS 235
F FG I S
Sbjct: 118 TFSAFGNILS 127
Score = 103 (41.3 bits), Expect = 0.00012, P = 0.00012
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 310 ANLYLKNLDDSINDEKLKELFSEFGTITS---CKVMVDQHGFSKGSGFAAFSMPEEATRA 366
A+LY+ +L + + L E FS G I S C+ M+ + S G + F P +A RA
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRR--SLGYAYVNFQQPADAERA 68
Query: 367 LNEMNGKMIGRKPLYVAVAQR 387
L+ MN +I KP+ + +QR
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQR 89
>SGD|S000001919 [details] [associations]
symbol:PES4 "Poly(A) binding protein, suppressor of DNA
polymerase epsilon mutation" species:4932 "Saccharomyces
cerevisiae" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000001919
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:D50617
EMBL:BK006940 GO:GO:0003723 eggNOG:NOG271400
GeneTree:ENSGT00550000075863 HOGENOM:HOG000000869 OrthoDB:EOG45HW68
EMBL:D26442 PIR:S56278 RefSeq:NP_116678.1 ProteinModelPortal:P39684
SMR:P39684 STRING:P39684 EnsemblFungi:YFR023W GeneID:850579
KEGG:sce:YFR023W CYGD:YFR023w OMA:DDCGRSK NextBio:966406
Genevestigator:P39684 GermOnline:YFR023W Uniprot:P39684
Length = 611
Score = 307 (113.1 bits), Expect = 9.7e-36, Sum P(2) = 9.7e-36
Identities = 68/192 (35%), Positives = 106/192 (55%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKE 87
V L++GDL + V E L +F + VS +VC D + SLG+ Y+N+ + ++A A E
Sbjct: 91 VPLFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAME 150
Query: 88 ALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTS---IDNKALCDTFAAFGTVLS 144
LN+ +NGK IRIM S R+ + RK+ NVF NL + + + DTF+ +G +LS
Sbjct: 151 ELNYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILS 210
Query: 145 CKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSP 204
CK +DS K GFV FE+E+ A+N IKM N K++ G+ ++ R+ N
Sbjct: 211 CK--LDSR---KDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFET 265
Query: 205 KFTNVYVNNLAE 216
+ + + + E
Sbjct: 266 QKSRLDAETIIE 277
Score = 151 (58.2 bits), Expect = 9.7e-36, Sum P(2) = 9.7e-36
Identities = 52/185 (28%), Positives = 87/185 (47%)
Query: 196 ERAQQNV-SPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNF 254
++ +N+ S ++++ NL T +D+ F G I S I + ++ + FV +
Sbjct: 291 DKESKNIYSSSQNSIFIKNLPTITTRDDILNFFSEVGPIKS-IYLSNATKVKYLWAFVTY 349
Query: 255 QSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKF-EQERISRYEKLKGANLY 313
++ + A+++ N K V RAQ + ER AKF E ++IS L+
Sbjct: 350 KNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEER-----AKFIESQKIS--------TLF 396
Query: 314 LKNLDDSINDEKLKELFSEFGTITSCKVMVDQH--GFSKGSGFAAFSMPEEATRALNEMN 371
L+NL N E LK L + I K+ +D + S SGF F E+ATR N +N
Sbjct: 397 LENLSAVCNKEFLKYLCHQ-ENIRPFKIQIDGYDENSSTYSGFIKFRNFEDATRIFNFLN 455
Query: 372 GKMIG 376
+++G
Sbjct: 456 NRLVG 460
Score = 138 (53.6 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 54/218 (24%), Positives = 97/218 (44%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKML 176
+FI +L ++ + L F + + +S KV +DS +S G+G++ FE++E A+ A++ L
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 177 NGMLINDKQVYVGLFVRRQE-RAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITS 235
N +N K++ + +R R + F+N+ +NN +T F +G I S
Sbjct: 153 NYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNN--PLLTTRVFYDTFSRYGKILS 210
Query: 236 AIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAK 295
+ D GFV F+ A ++ N T+ K G ++E
Sbjct: 211 CKLDSRKD-----IGFVYFEDEKTARNVIKMYNNTSFFGKKILCGI---HFDKEVRSVPN 262
Query: 296 FEQERISRY--EKLKGANLYLKNLDDSINDEKLKELFS 331
FE ++ SR E + L ND++ K ++S
Sbjct: 263 FETQK-SRLDAETIIEKEQSLNEKHSKGNDKESKNIYS 299
Score = 130 (50.8 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 44/143 (30%), Positives = 68/143 (47%)
Query: 203 SPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAA 261
S K +++ +L ETVT+E LK IF + + SA V DS KS G++NF+ + A
Sbjct: 87 SKKLVPLFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAE 146
Query: 262 AAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNL---D 318
A+E+LN T N K ++R R + + K G N++ NL +
Sbjct: 147 KAMEELNYTKVNGK---------------EIRI-MPSLRNTTFRKNFGTNVFFSNLPLNN 190
Query: 319 DSINDEKLKELFSEFGTITSCKV 341
+ + FS +G I SCK+
Sbjct: 191 PLLTTRVFYDTFSRYGKILSCKL 213
Score = 125 (49.1 bits), Expect = 0.00023, P = 0.00023
Identities = 44/164 (26%), Positives = 73/164 (44%)
Query: 109 SIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGY--GFVQFENE 166
+I S ++FIKNL T + + F+ G + S + SN Y FV ++N
Sbjct: 296 NIYSSSQNSIFIKNLPTITTRDDILNFFSEVGPIKSIYL---SNATKVKYLWAFVTYKNS 352
Query: 167 EAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKI 226
++ AIK N K++ V ++ERA+ S K + +++ NL+ E LK +
Sbjct: 353 SDSEKAIKRYNNFYFRGKKLLVTRAQDKEERAKFIESQKISTLFLENLSAVCNKEFLKYL 412
Query: 227 FGHFGTITSAIVMKDS-DGKSRCF-GFVNFQSPDAAAAAVEKLN 268
H I + D D S + GF+ F++ + A LN
Sbjct: 413 C-HQENIRPFKIQIDGYDENSSTYSGFIKFRNFEDATRIFNFLN 455
Score = 74 (31.1 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 29/121 (23%), Positives = 51/121 (42%)
Query: 282 AQKRAEREADLRAKF----EQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTIT 337
A+ E+E L K ++E + Y + + +++KNL + + FSE G I
Sbjct: 272 AETIIEKEQSLNEKHSKGNDKESKNIYSSSQNS-IFIKNLPTITTRDDILNFFSEVGPIK 330
Query: 338 SCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQA 397
S + + F + ++ +A+ N K L V AQ KEER +++
Sbjct: 331 SI-YLSNATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEERAKFIES 389
Query: 398 Q 398
Q
Sbjct: 390 Q 390
>UNIPROTKB|H0YBN4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523555
Uniprot:H0YBN4
Length = 175
Score = 274 (101.5 bits), Expect = 4.3e-23, P = 4.3e-23
Identities = 74/175 (42%), Positives = 92/175 (52%)
Query: 73 YVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRKS-GYGNVFIKNLDTSIDNKA 131
YV +P D A F P PI + RD R+S GY V N D +
Sbjct: 9 YVGDLHP-DVTEAMLYEKFSPAG--PILSIRVCRDMITRRSLGYAYV---NFQQPADAER 62
Query: 132 LCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLF 191
DT F + V D NG SKGYGFV FE +EAA+ AI+ +NGML+ND++V+VG F
Sbjct: 63 ALDTMN-FDVIKGKPVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 120
Query: 192 VRRQER-AQQNVSPK-FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDG 244
R+ER A+ K FTNVY+ N E + DE LK +FG FG S VM D G
Sbjct: 121 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG 175
Score = 210 (79.0 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
Identities = 47/119 (39%), Positives = 74/119 (62%)
Query: 229 HFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAER 288
+F I V+ D +G S+ +GFV+F++ +AA A+EK+NG ND+ +VGR + R ER
Sbjct: 68 NFDVIKGKPVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 126
Query: 289 EADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHG 347
EA+L A+ ++ N+Y+KN + ++DE+LK+LF +FG S KVM D+ G
Sbjct: 127 EAELGARAKEF----------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG 175
Score = 206 (77.6 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
Identities = 39/75 (52%), Positives = 49/75 (65%)
Query: 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAAN 84
Y SLYVGDL +V E+ LY+ FS ++S+RVCRD R SLGYAYVN+ P DA
Sbjct: 3 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 62
Query: 85 AKEALNFMPINGKPI 99
A + +NF I GKP+
Sbjct: 63 ALDTMNFDVIKGKPV 77
Score = 118 (46.6 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 32/101 (31%), Positives = 51/101 (50%)
Query: 59 VCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI----MYSHRDPSI--RK 112
VC D++ S GY +V++ + A A E +N M +N + + + R+ + R
Sbjct: 78 VC-DEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARA 134
Query: 113 SGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNG 153
+ NV+IKN +D++ L D F FG LS KV D +G
Sbjct: 135 KEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG 175
Score = 107 (42.7 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 333 FGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERK 392
F I V+ D++G SKG GF F E A RA+ +MNG ++ + ++V + ++ER+
Sbjct: 69 FDVIKGKPVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 127
Query: 393 ARLQAQ 398
A L A+
Sbjct: 128 AELGAR 133
Score = 79 (32.9 bits), Expect = 4.6e-22, Sum P(2) = 4.6e-22
Identities = 19/71 (26%), Positives = 36/71 (50%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
++++ +L + L + F+ G +LS +V D +S GY +V F+ A+ A+
Sbjct: 7 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 66
Query: 176 LNGMLINDKQV 186
+N +I K V
Sbjct: 67 MNFDVIKGKPV 77
Score = 76 (31.8 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 208 NVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVEK 266
++YV +L VT+ L + F G I S V +D +S + +VNFQ P A A++
Sbjct: 7 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 66
Query: 267 LN 268
+N
Sbjct: 67 MN 68
>UNIPROTKB|H0YEQ8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000470443 Uniprot:H0YEQ8
Length = 112
Score = 384 (140.2 bits), Expect = 2.7e-35, P = 2.7e-35
Identities = 74/112 (66%), Positives = 87/112 (77%)
Query: 75 NYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCD 134
N+ P DA A + +NF I GKPIRIM+S RDPS+RKSG GNVFIKNLD SIDNKAL D
Sbjct: 2 NFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYD 61
Query: 135 TFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQV 186
TF+AFG +LSCKV D NG SKGY FV FE +EAA AI+ +NGML+ND++V
Sbjct: 62 TFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKV 112
Score = 155 (59.6 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 32/69 (46%), Positives = 47/69 (68%)
Query: 311 NLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEM 370
N+++KNLD SI+++ L + FS FG I SCKV+ D++G SKG F F E A +A+ +M
Sbjct: 44 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 102
Query: 371 NGKMIG-RK 378
NG ++ RK
Sbjct: 103 NGMLLNDRK 111
Score = 134 (52.2 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 34/113 (30%), Positives = 60/113 (53%)
Query: 163 FENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDED 222
F+ A+ A+ +N +I K + + R + V NV++ NL +++ ++
Sbjct: 3 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG----NVFIKNLDKSIDNKA 58
Query: 223 LKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDK 275
L F FG I S V+ D +G S+ + FV+F++ +AA A+EK+NG ND+
Sbjct: 59 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDR 110
Score = 115 (45.5 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 25/77 (32%), Positives = 46/77 (59%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
SG GNV ++ +L+++++ LYD FS ++S +V D++ S GYA+V++ + A
Sbjct: 40 SGVGNV--FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYAFVHFETQEAA 95
Query: 83 ANAKEALNFMPINGKPI 99
A E +N M +N + +
Sbjct: 96 DKAIEKMNGMLLNDRKV 112
>UNIPROTKB|E5RGH3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00983093
ProteinModelPortal:E5RGH3 SMR:E5RGH3 Ensembl:ENST00000518196
ArrayExpress:E5RGH3 Bgee:E5RGH3 Uniprot:E5RGH3
Length = 108
Score = 378 (138.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 72/105 (68%), Positives = 83/105 (79%)
Query: 66 RSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDT 125
R SLGYAYVN+ P DA A + +NF I GKP+RIM+S RDPS+RKSG GN+FIKNLD
Sbjct: 4 RRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDK 63
Query: 126 SIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQ 170
SIDNKAL DTF+AFG +LSCKV D NG SKGYGFV FE +EAA+
Sbjct: 64 SIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAE 107
Score = 144 (55.7 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 43/121 (35%), Positives = 62/121 (51%)
Query: 245 KSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRY 304
+S + +VNFQ P A A++ +N K + +Q R+ LR
Sbjct: 5 RSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ----RDPSLR----------- 49
Query: 305 EKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEAT 364
K N+++KNLD SI+++ L + FS FG I SCKV+ D++G SKG GF F E A
Sbjct: 50 -KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAE 107
Query: 365 R 365
R
Sbjct: 108 R 108
Score = 126 (49.4 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 32/107 (29%), Positives = 57/107 (53%)
Query: 154 QSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNN 213
+S GY +V F+ A+ A+ +N +I K V + R + V N+++ N
Sbjct: 5 RSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG----NIFIKN 60
Query: 214 LAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAA 260
L +++ ++ L F FG I S V+ D +G S+ +GFV+F++ +AA
Sbjct: 61 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAA 106
>UNIPROTKB|E5RH24 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00979703
ProteinModelPortal:E5RH24 SMR:E5RH24 Ensembl:ENST00000520142
ArrayExpress:E5RH24 Bgee:E5RH24 Uniprot:E5RH24
Length = 118
Score = 358 (131.1 bits), Expect = 2.4e-32, P = 2.4e-32
Identities = 70/114 (61%), Positives = 83/114 (72%)
Query: 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQD 81
PS Y SLYVGDL +V E+ LY+ FS ++S+RVCRD R SLGYAYVN+ P D
Sbjct: 6 PS-YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 82 AANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDT 135
A A + +NF I GKP+RIM+S RDPS+RKSG GN+FIKNLD SIDNKAL DT
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDT 118
Score = 103 (41.3 bits), Expect = 0.00012, P = 0.00012
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 310 ANLYLKNLDDSINDEKLKELFSEFGTITS---CKVMVDQHGFSKGSGFAAFSMPEEATRA 366
A+LY+ +L + + L E FS G I S C+ M+ + S G + F P +A RA
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRR--SLGYAYVNFQQPADAERA 68
Query: 367 LNEMNGKMIGRKPLYVAVAQR 387
L+ MN +I KP+ + +QR
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQR 89
Score = 95 (38.5 bits), Expect = 0.00086, P = 0.00086
Identities = 27/118 (22%), Positives = 55/118 (46%)
Query: 107 DPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFEN 165
+PS ++++ +L + L + F+ G +LS +V D +S GY +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 166 EEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDL 223
A+ A+ +N +I K V + R + V N+++ NL +++ ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG----NIFIKNLDKSIDNKAL 115
>UNIPROTKB|H0YEU6 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000527718 Uniprot:H0YEU6
Length = 249
Score = 350 (128.3 bits), Expect = 1.9e-31, P = 1.9e-31
Identities = 89/184 (48%), Positives = 113/184 (61%)
Query: 291 DLRAKFEQ---ERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHG 347
+L+ KFEQ ERISRY+ G NLY+KNLDD+I+DEKL++ FS FG+ITS KVM++ G
Sbjct: 2 ELKRKFEQLKQERISRYQ---GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-G 57
Query: 348 FSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQ----IR 403
SKG GF FS PEEAT+A+ EMNG+++G KPLYVA+AQRKEERKA L Q+ Q +R
Sbjct: 58 RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMR 117
Query: 404 A-PGG--MSPLASGIPGYHHGA-PRLGPQQLYYGQGTPGLMPPQAAGY-GFQQQVFPGLR 458
A P ++ GY A P+ + YY M P GFQ +R
Sbjct: 118 ALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGFQGMP-SAIR 176
Query: 459 PGGP 462
GP
Sbjct: 177 QSGP 180
Score = 206 (77.6 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
Identities = 51/124 (41%), Positives = 75/124 (60%)
Query: 193 RRQERAQQNVSPKF--TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFG 250
R+ E+ +Q ++ N+Y+ NL +T+ DE L+K F FG+ITSA VM + DG+S+ FG
Sbjct: 5 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFG 63
Query: 251 FVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGA 310
FV F SP+ A AV ++NG K YV AQ++ ER+A L ++ Q R++ L A
Sbjct: 64 FVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ-RVAGMRALP-A 121
Query: 311 NLYL 314
N L
Sbjct: 122 NAIL 125
Score = 185 (70.2 bits), Expect = 5.4e-15, Sum P(2) = 5.4e-15
Identities = 39/99 (39%), Positives = 62/99 (62%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKML 176
N++IKNLD +ID++ L F+ FG++ S KV ++ +G+SKG+GFV F + E A A+ +
Sbjct: 22 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 80
Query: 177 NGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLA 215
NG ++ K +YV L R++ER TN Y+ +A
Sbjct: 81 NGRIVGSKPLYVALAQRKEERKAH-----LTNQYMQRVA 114
Score = 37 (18.1 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
Identities = 16/61 (26%), Positives = 22/61 (36%)
Query: 404 APGGMSPLASGIPGYHH--GAPRLGPQQLYYGQGTPGLMPPQAAGYGFQQQV---FPGLR 458
AP G +P + G+P G P Q L P A Y + V P ++
Sbjct: 188 APTGNAPASRGLPTTTQRVGVPT-AVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQ 246
Query: 459 P 459
P
Sbjct: 247 P 247
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 288 (106.4 bits), Expect = 2.8e-30, Sum P(2) = 2.8e-30
Identities = 59/180 (32%), Positives = 108/180 (60%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ ++YVG L+ ++E L++LF Q VV+V V +D+ Y ++ Y + +DA A
Sbjct: 24 DATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAI 83
Query: 87 EALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSC- 145
+ LN + ++GKPIR+ + +D G N+FI NLD +D K L DTF+AFG + S
Sbjct: 84 KVLNMIKLHGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIASNP 142
Query: 146 KVAIDSN-GQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSP 204
K+ D + G S+G+GF+ +++ EA+ AI+ + G ++++Q+ V ++ + +++ +P
Sbjct: 143 KIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTKGERHGTP 202
Score = 194 (73.4 bits), Expect = 4.3e-16, Sum P(2) = 4.3e-16
Identities = 53/180 (29%), Positives = 93/180 (51%)
Query: 109 SIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEE 167
S ++ V++ LD + + L + F G V++ V D + YGF+++ +EE
Sbjct: 18 SAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEE 77
Query: 168 AAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIF 227
A AIK+LN + ++ K + V Q++ +V N+++ NL V ++ L F
Sbjct: 78 DADYAIKVLNMIKLHGKPIRVNK--ASQDKKSLDVG---ANLFIGNLDPDVDEKLLYDTF 132
Query: 228 GHFGTITS-AIVMKDSD-GKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKR 285
FG I S +M+D D G SR FGF+++ S +A+ AA+E + G +++ V A K+
Sbjct: 133 SAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKK 192
Score = 134 (52.2 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 49/172 (28%), Positives = 74/172 (43%)
Query: 309 GANLYLKNLDDSINDEKLKELFSEFGTITSC-KVMVDQH-GFSKGSGFAAFSMPEEATRA 366
GANL++ NLD ++++ L + FS FG I S K+M D G S+G GF ++ E + A
Sbjct: 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAA 170
Query: 367 LNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRAPGGMSPLASGIPGYHHGAPRLG 426
+ M G+ + + + V+ A +K+ + R ++ A +P A H +G
Sbjct: 171 IESMTGQYLSNRQITVSYAYKKDTKGERHGTPAERLLA--ATNPTAQ--KSRPHTLFAMG 226
Query: 427 PQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGPNYIMPYHLQRQVHPGQ 478
P GL P A G Q P R P Y Q P Q
Sbjct: 227 PPSS--APQVNGLPRPFANG-SMQPVPIPAPRQPPPPPPQVYQTQPPSWPSQ 275
Score = 76 (31.8 bits), Expect = 2.8e-30, Sum P(2) = 2.8e-30
Identities = 28/84 (33%), Positives = 34/84 (40%)
Query: 416 PGYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGPNYIMPYHLQRQVH 475
P H P P Q QG P PPQ + QQ F G RP P M H Q
Sbjct: 276 PQQHSMVPP--PMQFRPPQGMPPPPPPQFLNH---QQGFGGPRPPPPPQAMGMH-QHGGW 329
Query: 476 PGQRTGVRRSGNTHQMQQPQFMRN 499
P Q +++ G Q QQP + +
Sbjct: 330 PPQH--MQQQGGPPQQQQPPYQHH 351
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 242 (90.2 bits), Expect = 8.7e-29, Sum P(2) = 8.7e-29
Identities = 51/154 (33%), Positives = 84/154 (54%)
Query: 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANA 85
G +L V L QN+ + +L LFS + +V S ++ RD+ SLGY +VNY +DA A
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 86 KEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSC 145
LN + + K I++ Y+ + K N++I L S+ K + D F+ FG +++
Sbjct: 78 INTLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRSMTQKDVEDMFSRFGRIINS 135
Query: 146 KVAID-SNGQSKGYGFVQFENEEAAQNAIKMLNG 178
+V +D + G S+G F++F+ A+ AI NG
Sbjct: 136 RVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNG 169
Score = 180 (68.4 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 48/158 (30%), Positives = 76/158 (48%)
Query: 114 GYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNA 172
G N+ + L ++ L F++ G V S K+ D G S GYGFV + + A+ A
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 173 IKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGT 232
I LNG+ + K + V R V K N+Y++ L ++T +D++ +F FG
Sbjct: 78 INTLNGLRLQSKTIKVSY-----ARPSSEVI-KDANLYISGLPRSMTQKDVEDMFSRFGR 131
Query: 233 ITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
I ++ V+ D + G SR F+ F A A+ NG
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNG 169
Score = 143 (55.4 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 69/258 (26%), Positives = 111/258 (43%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEK 266
+N Y +++AE D+ G I + + + + R F + ++A +K
Sbjct: 2 SNGYEDHMAEDCRDD-----IGRTNLIVNYLPQNMTQDELRSL-FSSIGEVESAKLIRDK 55
Query: 267 LNG-TTNNDKVWYVGRAQKRAEREAD----LRAKFEQERIS----RYEKLKGANLYLKNL 317
+ G + V YV K AER + LR + + ++S E +K ANLY+ L
Sbjct: 56 VAGHSLGYGFVNYV--TAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGL 113
Query: 318 DDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEMNG-KMI 375
S+ + ++++FS FG I + +V+VDQ G S+G F F EA A+ NG K
Sbjct: 114 PRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNGHKPP 173
Query: 376 GR-KPLYVAVAQRKEERK-ARLQAQFAQIRAPGGMSPLASGIPGYHHGAPRL--GPQQLY 431
G +P+ V A + K L +Q A P+ HH A R P +
Sbjct: 174 GSSEPITVKFAANPNQNKNVALLSQLCHSPARRFGGPV-------HHQAQRFRFSPMGVD 226
Query: 432 YGQGTPGLMPPQAAGYGF 449
+ G G+ P A G+
Sbjct: 227 HMSGLSGVNVPGNASSGW 244
Score = 122 (48.0 bits), Expect = 0.00017, P = 0.00017
Identities = 33/91 (36%), Positives = 42/91 (46%)
Query: 108 PSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSN-GQSKGYGFVQFENE 166
P SG+ +FI NL D L F FG V + KV D N + KG+GFV N
Sbjct: 237 PGNASSGWC-IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 295
Query: 167 EAAQNAIKMLNGMLINDKQVYVGLFVRRQER 197
E A AI LNG + DK + V + +
Sbjct: 296 EEAAMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 110 (43.8 bits), Expect = 8.7e-29, Sum P(2) = 8.7e-29
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
+++ NL + + L ++FG FG +T+ V++D + K + FGFV + + AA A+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 268 NGTTNNDKVWYV 279
NG DK+ V
Sbjct: 306 NGYRLGDKILQV 317
Score = 104 (41.7 bits), Expect = 3.7e-28, Sum P(2) = 3.7e-28
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L ++F FG +T+ KV+ D + KG GF + EEA A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G K L V+ K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 240 (89.5 bits), Expect = 1.4e-28, Sum P(2) = 1.4e-28
Identities = 50/154 (32%), Positives = 84/154 (54%)
Query: 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANA 85
G +L V L QN+ + +L LFS + +V S ++ RD+ SLGY +VNY +DA A
Sbjct: 18 GRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 86 KEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSC 145
LN + + K I++ Y+ + K N++I L ++ K + D F+ FG +++
Sbjct: 78 ISTLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSRFGRIINS 135
Query: 146 KVAID-SNGQSKGYGFVQFENEEAAQNAIKMLNG 178
+V +D + G S+G F++F+ A+ AI NG
Sbjct: 136 RVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 186 (70.5 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 49/158 (31%), Positives = 77/158 (48%)
Query: 114 GYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNA 172
G N+ + L ++ + L F++ G V S K+ D G S GYGFV + + A+ A
Sbjct: 18 GRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 173 IKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGT 232
I LNG+ + K + V R V K N+Y++ L T+T +D++ +F FG
Sbjct: 78 ISTLNGLRLQSKTIKVSY-----ARPSSEVI-KDANLYISGLPRTMTQKDVEDMFSRFGR 131
Query: 233 ITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
I ++ V+ D + G SR F+ F A A+ NG
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 140 (54.3 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 48/151 (31%), Positives = 71/151 (47%)
Query: 305 EKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEA 363
E +K ANLY+ L ++ + ++++FS FG I + +V+VDQ G S+G F F EA
Sbjct: 101 EVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEA 160
Query: 364 TRALNEMNG-KMIGR-KPLYVAVAQRKEERKARLQAQFAQIRAPGGMSPLAS-GIPGYHH 420
A+ NG K G +P+ V A + K A +Q+ SP G P HH
Sbjct: 161 EEAITSFNGHKPPGSSEPITVKFAANPNQNKN--MALLSQLYH----SPARRFGGP-VHH 213
Query: 421 GAPRL--GPQQLYYGQGTPGLMPPQAAGYGF 449
A R P + + G G+ P A G+
Sbjct: 214 QAQRFRFSPMGVDHMSGISGVNVPGNASSGW 244
Score = 122 (48.0 bits), Expect = 0.00017, P = 0.00017
Identities = 33/91 (36%), Positives = 42/91 (46%)
Query: 108 PSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSN-GQSKGYGFVQFENE 166
P SG+ +FI NL D L F FG V + KV D N + KG+GFV N
Sbjct: 237 PGNASSGWC-IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 295
Query: 167 EAAQNAIKMLNGMLINDKQVYVGLFVRRQER 197
E A AI LNG + DK + V + +
Sbjct: 296 EEAAMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 120 (47.3 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVE 265
TN+ VN L + +T E+L+ +F G + SA +++D G S +GFVN+ + A A+
Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIS 79
Query: 266 KLNGTTNNDKVWYVGRAQKRAE--READL 292
LNG K V A+ +E ++A+L
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDANL 108
Score = 110 (43.8 bits), Expect = 1.4e-28, Sum P(2) = 1.4e-28
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
+++ NL + + L ++FG FG +T+ V++D + K + FGFV + + AA A+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 268 NGTTNNDKVWYV 279
NG DK+ V
Sbjct: 306 NGYRLGDKILQV 317
Score = 104 (41.7 bits), Expect = 6.1e-28, Sum P(2) = 6.1e-28
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L ++F FG +T+ KV+ D + KG GF + EEA A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G K L V+ K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 240 (89.5 bits), Expect = 1.4e-28, Sum P(2) = 1.4e-28
Identities = 50/154 (32%), Positives = 84/154 (54%)
Query: 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANA 85
G +L V L QN+ + +L LFS + +V S ++ RD+ SLGY +VNY +DA A
Sbjct: 18 GRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 86 KEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSC 145
LN + + K I++ Y+ + K N++I L ++ K + D F+ FG +++
Sbjct: 78 ISTLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSRFGRIINS 135
Query: 146 KVAID-SNGQSKGYGFVQFENEEAAQNAIKMLNG 178
+V +D + G S+G F++F+ A+ AI NG
Sbjct: 136 RVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 186 (70.5 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 49/158 (31%), Positives = 77/158 (48%)
Query: 114 GYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNA 172
G N+ + L ++ + L F++ G V S K+ D G S GYGFV + + A+ A
Sbjct: 18 GRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 173 IKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGT 232
I LNG+ + K + V R V K N+Y++ L T+T +D++ +F FG
Sbjct: 78 ISTLNGLRLQSKTIKVSY-----ARPSSEVI-KDANLYISGLPRTMTQKDVEDMFSRFGR 131
Query: 233 ITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
I ++ V+ D + G SR F+ F A A+ NG
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 140 (54.3 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 48/151 (31%), Positives = 71/151 (47%)
Query: 305 EKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEA 363
E +K ANLY+ L ++ + ++++FS FG I + +V+VDQ G S+G F F EA
Sbjct: 101 EVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEA 160
Query: 364 TRALNEMNG-KMIGR-KPLYVAVAQRKEERKARLQAQFAQIRAPGGMSPLAS-GIPGYHH 420
A+ NG K G +P+ V A + K A +Q+ SP G P HH
Sbjct: 161 EEAITSFNGHKPPGSSEPITVKFAANPNQNKN--MALLSQLYH----SPARRFGGP-VHH 213
Query: 421 GAPRL--GPQQLYYGQGTPGLMPPQAAGYGF 449
A R P + + G G+ P A G+
Sbjct: 214 QAQRFRFSPMGVDHMSGISGVNVPGNASSGW 244
Score = 122 (48.0 bits), Expect = 0.00017, P = 0.00017
Identities = 33/91 (36%), Positives = 42/91 (46%)
Query: 108 PSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSN-GQSKGYGFVQFENE 166
P SG+ +FI NL D L F FG V + KV D N + KG+GFV N
Sbjct: 237 PGNASSGWC-IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 295
Query: 167 EAAQNAIKMLNGMLINDKQVYVGLFVRRQER 197
E A AI LNG + DK + V + +
Sbjct: 296 EEAAMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 120 (47.3 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVE 265
TN+ VN L + +T E+L+ +F G + SA +++D G S +GFVN+ + A A+
Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIS 79
Query: 266 KLNGTTNNDKVWYVGRAQKRAE--READL 292
LNG K V A+ +E ++A+L
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDANL 108
Score = 110 (43.8 bits), Expect = 1.4e-28, Sum P(2) = 1.4e-28
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
+++ NL + + L ++FG FG +T+ V++D + K + FGFV + + AA A+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 268 NGTTNNDKVWYV 279
NG DK+ V
Sbjct: 306 NGYRLGDKILQV 317
Score = 104 (41.7 bits), Expect = 6.1e-28, Sum P(2) = 6.1e-28
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L ++F FG +T+ KV+ D + KG GF + EEA A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G K L V+ K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 240 (89.5 bits), Expect = 1.4e-28, Sum P(2) = 1.4e-28
Identities = 50/154 (32%), Positives = 84/154 (54%)
Query: 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANA 85
G +L V L QN+ + +L LFS + +V S ++ RD+ SLGY +VNY +DA A
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 86 KEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSC 145
LN + + K I++ Y+ + K N++I L ++ K + D F+ FG +++
Sbjct: 78 INTLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSRFGRIINS 135
Query: 146 KVAID-SNGQSKGYGFVQFENEEAAQNAIKMLNG 178
+V +D + G S+G F++F+ A+ AI NG
Sbjct: 136 RVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 184 (69.8 bits), Expect = 3.7e-18, Sum P(2) = 3.7e-18
Identities = 49/158 (31%), Positives = 76/158 (48%)
Query: 114 GYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNA 172
G N+ + L ++ L F++ G V S K+ D G S GYGFV + + A+ A
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 173 IKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGT 232
I LNG+ + K + V R V K N+Y++ L T+T +D++ +F FG
Sbjct: 78 INTLNGLRLQSKTIKVSY-----ARPSSEVI-KDANLYISGLPRTMTQKDVEDMFSRFGR 131
Query: 233 ITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
I ++ V+ D + G SR F+ F A A+ NG
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 139 (54.0 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 49/153 (32%), Positives = 72/153 (47%)
Query: 305 EKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEA 363
E +K ANLY+ L ++ + ++++FS FG I + +V+VDQ G S+G F F EA
Sbjct: 101 EVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEA 160
Query: 364 TRALNEMNG-KMIGR-KPLYVAVAQRKEERK--ARL-QAQFAQIRAPGGMSPLASGIPGY 418
A+ NG K G +P+ V A + K A L Q + R GG P+
Sbjct: 161 EEAITSFNGHKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGG--PV------- 211
Query: 419 HHGAPRL--GPQQLYYGQGTPGLMPPQAAGYGF 449
HH A R P + + G G+ P A G+
Sbjct: 212 HHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGW 244
Score = 122 (48.0 bits), Expect = 0.00017, P = 0.00017
Identities = 33/91 (36%), Positives = 42/91 (46%)
Query: 108 PSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSN-GQSKGYGFVQFENE 166
P SG+ +FI NL D L F FG V + KV D N + KG+GFV N
Sbjct: 237 PGNASSGWC-IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 295
Query: 167 EAAQNAIKMLNGMLINDKQVYVGLFVRRQER 197
E A AI LNG + DK + V + +
Sbjct: 296 EEAAMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 117 (46.2 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVE 265
TN+ VN L + +T ++L+ +F G + SA +++D G S +GFVN+ + A A+
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 266 KLNGTTNNDKVWYVGRAQKRAE--READL 292
LNG K V A+ +E ++A+L
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDANL 108
Score = 110 (43.8 bits), Expect = 1.4e-28, Sum P(2) = 1.4e-28
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
+++ NL + + L ++FG FG +T+ V++D + K + FGFV + + AA A+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 268 NGTTNNDKVWYV 279
NG DK+ V
Sbjct: 306 NGYRLGDKILQV 317
Score = 104 (41.7 bits), Expect = 6.1e-28, Sum P(2) = 6.1e-28
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L ++F FG +T+ KV+ D + KG GF + EEA A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G K L V+ K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 240 (89.5 bits), Expect = 1.4e-28, Sum P(2) = 1.4e-28
Identities = 50/154 (32%), Positives = 84/154 (54%)
Query: 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANA 85
G +L V L QN+ + +L LFS + +V S ++ RD+ SLGY +VNY +DA A
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 86 KEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSC 145
LN + + K I++ Y+ + K N++I L ++ K + D F+ FG +++
Sbjct: 78 INTLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRNMTQKDVEDMFSRFGRIINS 135
Query: 146 KVAID-SNGQSKGYGFVQFENEEAAQNAIKMLNG 178
+V +D + G S+G F++F+ A+ AI NG
Sbjct: 136 RVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 179 (68.1 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 48/158 (30%), Positives = 75/158 (47%)
Query: 114 GYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNA 172
G N+ + L ++ L F++ G V S K+ D G S GYGFV + + A+ A
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 173 IKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGT 232
I LNG+ + K + V R V K N+Y++ L +T +D++ +F FG
Sbjct: 78 INTLNGLRLQSKTIKVSY-----ARPSSEVI-KDANLYISGLPRNMTQKDVEDMFSRFGR 131
Query: 233 ITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
I ++ V+ D + G SR F+ F A A+ NG
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 140 (54.3 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 71/260 (27%), Positives = 114/260 (43%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEK 266
+N Y +++AE D+ G I + + + + R F + ++A +K
Sbjct: 2 SNGYEDHMAEDCRDD-----IGRTNLIVNYLPQNMTQDELRSL-FSSIGEVESAKLIRDK 55
Query: 267 LNG-TTNNDKVWYVGRAQKRAEREAD----LRAKFEQERIS----RYEKLKGANLYLKNL 317
+ G + V YV K AER + LR + + ++S E +K ANLY+ L
Sbjct: 56 VAGHSLGYGFVNYV--TAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGL 113
Query: 318 DDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEMNG-KMI 375
++ + ++++FS FG I + +V+VDQ G S+G F F EA A+ NG K
Sbjct: 114 PRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPP 173
Query: 376 GR-KPLYVAVAQRKEERK--ARL-QAQFAQIRAPGGMSPLASGIPGYHHGAPRL--GPQQ 429
G +P+ V A + K A L Q + R GG P+ HH A R P
Sbjct: 174 GSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGG--PV-------HHQAQRFRFSPMG 224
Query: 430 LYYGQGTPGLMPPQAAGYGF 449
+ + G G+ P A G+
Sbjct: 225 VDHMSGLSGVNVPGNASSGW 244
Score = 122 (48.0 bits), Expect = 0.00017, P = 0.00017
Identities = 33/91 (36%), Positives = 42/91 (46%)
Query: 108 PSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSN-GQSKGYGFVQFENE 166
P SG+ +FI NL D L F FG V + KV D N + KG+GFV N
Sbjct: 237 PGNASSGWC-IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 295
Query: 167 EAAQNAIKMLNGMLINDKQVYVGLFVRRQER 197
E A AI LNG + DK + V + +
Sbjct: 296 EEAAMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 110 (43.8 bits), Expect = 1.4e-28, Sum P(2) = 1.4e-28
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
+++ NL + + L ++FG FG +T+ V++D + K + FGFV + + AA A+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 268 NGTTNNDKVWYV 279
NG DK+ V
Sbjct: 306 NGYRLGDKILQV 317
Score = 104 (41.7 bits), Expect = 6.1e-28, Sum P(2) = 6.1e-28
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L ++F FG +T+ KV+ D + KG GF + EEA A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G K L V+ K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
>UNIPROTKB|H0YAP2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519622
Uniprot:H0YAP2
Length = 131
Score = 320 (117.7 bits), Expect = 4.0e-28, P = 4.0e-28
Identities = 64/121 (52%), Positives = 84/121 (69%)
Query: 220 DEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYV 279
DE LK +FG FG S VM D GKS+ FGFV+F+ + A AV+++NG N K YV
Sbjct: 2 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 61
Query: 280 GRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSC 339
GRAQK+ ER+ +L+ KFEQ + R + +G NLY+KNLDD I+DE+L++ FS FGTITS
Sbjct: 62 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 121
Query: 340 K 340
K
Sbjct: 122 K 122
Score = 220 (82.5 bits), Expect = 3.0e-17, P = 3.0e-17
Identities = 53/121 (43%), Positives = 69/121 (57%)
Query: 129 NKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYV 188
++ L D F FG LS KV D +G+SKG+GFV FE E AQ A+ +NG +N KQ+YV
Sbjct: 2 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 61
Query: 189 GLFVRRQERAQQNVSPKF-------------TNVYVNNLAETVTDEDLKKIFGHFGTITS 235
G ++ ER Q + KF N+YV NL + + DE L+K F FGTITS
Sbjct: 62 GRAQKKVER-QTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITS 120
Query: 236 A 236
A
Sbjct: 121 A 121
Score = 200 (75.5 bits), Expect = 4.4e-15, P = 4.4e-15
Identities = 39/81 (48%), Positives = 56/81 (69%)
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYV 382
DE+LK+LF +FG S KVM D+ G SKG GF +F E+A +A++EMNGK + K +YV
Sbjct: 2 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 61
Query: 383 AVAQRKEERKARLQAQFAQIR 403
AQ+K ER+ L+ +F Q++
Sbjct: 62 GRAQKKVERQTELKRKFEQMK 82
Score = 133 (51.9 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 37/122 (30%), Positives = 65/122 (53%)
Query: 41 ESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIR 100
+ +L DLF + +SV+V D+S +S G+ +V++ +DA A + +N +NGK I
Sbjct: 2 DERLKDLFGKFGPALSVKVMTDESGKSK-GFGFVSFERHEDAQKAVDEMNGKELNGKQIY 60
Query: 101 IMYSH----RDPSIRK----------SGY-G-NVFIKNLDTSIDNKALCDTFAAFGTVLS 144
+ + R +++ + Y G N+++KNLD ID++ L F+ FGT+ S
Sbjct: 61 VGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITS 120
Query: 145 CK 146
K
Sbjct: 121 AK 122
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 247 (92.0 bits), Expect = 9.7e-28, Sum P(2) = 9.7e-28
Identities = 52/151 (34%), Positives = 88/151 (58%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+L V L QN+++ +L LFS + +V S ++ RD+ SLGY +VNY NP DA A
Sbjct: 35 NLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAIST 94
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN + + K I++ Y+ PS N++I L ++ K + + F +G +++ +V
Sbjct: 95 LNGLRLQSKTIKVSYAR--PSSDSIKDANLYISGLPKTMTQKDVEEMFGRYGRIINSRVL 152
Query: 149 ID-SNGQSKGYGFVQFENEEAAQNAIKMLNG 178
+D ++G S+G F++F+ A++AIK LNG
Sbjct: 153 VDQASGLSRGVAFIRFDKRAEAEDAIKDLNG 183
Score = 198 (74.8 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 50/155 (32%), Positives = 82/155 (52%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+ + L ++ L F++ G V S K+ D G S GYGFV + N A+ AI
Sbjct: 35 NLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAIST 94
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITS 235
LNG+ + K + V + R + S K N+Y++ L +T+T +D++++FG +G I +
Sbjct: 95 LNGLRLQSKTIKVS-YAR-----PSSDSIKDANLYISGLPKTMTQKDVEEMFGRYGRIIN 148
Query: 236 AIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
+ V+ D + G SR F+ F A A++ LNG
Sbjct: 149 SRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNG 183
Score = 127 (49.8 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 40/149 (26%), Positives = 68/149 (45%)
Query: 305 EKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEA 363
+ +K ANLY+ L ++ + ++E+F +G I + +V+VDQ G S+G F F EA
Sbjct: 115 DSIKDANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEA 174
Query: 364 TRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRAPGGMSPLASGIPG-YHHGA 422
A+ ++NG+ KP A + + Q + Q+ P + G HH A
Sbjct: 175 EDAIKDLNGQ----KPPGAAEQMTVKFAASPNQVKNTQV-IPQVYHQQSRRFGGPVHHQA 229
Query: 423 PRL--GPQQLYYGQGTPGLMPPQAAGYGF 449
R P + + G G+ P + G+
Sbjct: 230 QRFRFSPMSVDHMSGMSGVNVPGNSSSGW 258
Score = 122 (48.0 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 33/112 (29%), Positives = 59/112 (52%)
Query: 184 KQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS- 242
K+VY A + + K TN+ VN L + ++ ++L+ +F G + SA +++D
Sbjct: 12 KEVYDMSNGYEDHMADELIDSK-TNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKV 70
Query: 243 DGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAE--READL 292
G S +GFVN+ +P+ A A+ LNG K V A+ ++ ++A+L
Sbjct: 71 AGHSLGYGFVNYLNPNDAERAISTLNGLRLQSKTIKVSYARPSSDSIKDANL 122
Score = 118 (46.6 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 35/103 (33%), Positives = 47/103 (45%)
Query: 87 EALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCK 146
+ F P++ + M P SG+ +FI NL D L F FG V + K
Sbjct: 230 QRFRFSPMSVDHMSGMSGVNVPGNSSSGWC-IFIYNLGQDADEGILWQMFGPFGAVTNVK 288
Query: 147 VAIDSN-GQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYV 188
V D N + KG+GFV + E A AI LNG + DK + V
Sbjct: 289 VIRDFNTNKCKGFGFVTMTHYEEAAMAIASLNGYRLGDKILQV 331
Score = 108 (43.1 bits), Expect = 9.7e-28, Sum P(2) = 9.7e-28
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
+++ NL + + L ++FG FG +T+ V++D + K + FGFV + AA A+ L
Sbjct: 260 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASL 319
Query: 268 NGTTNNDKVWYV 279
NG DK+ V
Sbjct: 320 NGYRLGDKILQV 331
Score = 103 (41.3 bits), Expect = 3.2e-27, Sum P(2) = 3.2e-27
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L ++F FG +T+ KV+ D + KG GF + EEA A+ +
Sbjct: 260 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASL 319
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G K L V+ K +
Sbjct: 320 NGYRLGDKILQVSFKTSKSHK 340
Score = 83 (34.3 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 15/64 (23%), Positives = 36/64 (56%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ +LY+ L + + + + ++F + ++++ RV DQ+ S G A++ + +A +A
Sbjct: 119 DANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAI 178
Query: 87 EALN 90
+ LN
Sbjct: 179 KDLN 182
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 239 (89.2 bits), Expect = 1.5e-27, Sum P(2) = 1.5e-27
Identities = 49/154 (31%), Positives = 84/154 (54%)
Query: 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANA 85
G +L V L QN+ + +L LFS + ++ S ++ RD+ SLGY +VNY +DA A
Sbjct: 18 GRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 86 KEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSC 145
LN + + K I++ Y+ + K N++I L ++ K + D F+ FG +++
Sbjct: 78 INTLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSPFGRIINS 135
Query: 146 KVAID-SNGQSKGYGFVQFENEEAAQNAIKMLNG 178
+V +D + G S+G F++F+ A+ AI NG
Sbjct: 136 RVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 183 (69.5 bits), Expect = 3.8e-18, Sum P(2) = 3.8e-18
Identities = 48/158 (30%), Positives = 77/158 (48%)
Query: 114 GYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNA 172
G N+ + L ++ + L F++ G + S K+ D G S GYGFV + + A+ A
Sbjct: 18 GRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 173 IKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGT 232
I LNG+ + K + V R V K N+Y++ L T+T +D++ +F FG
Sbjct: 78 INTLNGLRLQSKTIKVSY-----ARPSSEVI-KDANLYISGLPRTMTQKDVEDMFSPFGR 131
Query: 233 ITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
I ++ V+ D + G SR F+ F A A+ NG
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 138 (53.6 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 49/153 (32%), Positives = 72/153 (47%)
Query: 305 EKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEA 363
E +K ANLY+ L ++ + ++++FS FG I + +V+VDQ G S+G F F EA
Sbjct: 101 EVIKDANLYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEA 160
Query: 364 TRALNEMNG-KMIGR-KPLYVAVAQRKEERK--ARL-QAQFAQIRAPGGMSPLASGIPGY 418
A+ NG K G +P+ V A + K A L Q + R GG P+
Sbjct: 161 EEAITSFNGHKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGG--PV------- 211
Query: 419 HHGAPRL--GPQQLYYGQGTPGLMPPQAAGYGF 449
HH A R P + + G G+ P A G+
Sbjct: 212 HHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGW 244
Score = 123 (48.4 bits), Expect = 0.00013, P = 0.00013
Identities = 33/91 (36%), Positives = 42/91 (46%)
Query: 108 PSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSN-GQSKGYGFVQFENE 166
P SG+ +FI NL D L F FG V + KV D N + KG+GFV N
Sbjct: 237 PGNASSGWC-IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 295
Query: 167 EAAQNAIKMLNGMLINDKQVYVGLFVRRQER 197
E A AI LNG + DK + V + +
Sbjct: 296 EEASMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 121 (47.7 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 31/89 (34%), Positives = 49/89 (55%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVE 265
TN+ VN L + +T E+L+ +F G I SA +++D G S +GFVN+ + A A+
Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 266 KLNGTTNNDKVWYVGRAQKRAE--READL 292
LNG K V A+ +E ++A+L
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDANL 108
Score = 119 (46.9 bits), Expect = 0.00037, P = 0.00037
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 311 NLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNE 369
NL + L ++ E+L+ LFS G I S K++ D+ G S G GF + ++A RA+N
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 370 MNGKMIGRKPLYVAVAQRKEE 390
+NG + K + V+ A+ E
Sbjct: 81 LNGLRLQSKTIKVSYARPSSE 101
Score = 107 (42.7 bits), Expect = 1.5e-27, Sum P(2) = 1.5e-27
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
+++ NL + + L ++FG FG +T+ V++D + K + FGFV + + A+ A+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASL 305
Query: 268 NGTTNNDKVWYV 279
NG DK+ V
Sbjct: 306 NGYRLGDKILQV 317
Score = 105 (42.0 bits), Expect = 2.4e-27, Sum P(2) = 2.4e-27
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L ++F FG +T+ KV+ D + KG GF + EEA+ A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASL 305
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G K L V+ K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 238 (88.8 bits), Expect = 4.3e-27, Sum P(2) = 4.3e-27
Identities = 51/154 (33%), Positives = 84/154 (54%)
Query: 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANA 85
G +L V L QN+ + +L LFS + +V S ++ RD+ SLGY +VNY N +DA A
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERA 77
Query: 86 KEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSC 145
LN + + K I++ ++ PS N++I L ++ K + D F FG +++
Sbjct: 78 INTLNGLRLQSKTIKVSFAR--PSSETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINS 135
Query: 146 KVAID-SNGQSKGYGFVQFENEEAAQNAIKMLNG 178
+V +D + G S+G F++F+ A+ AI NG
Sbjct: 136 RVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169
Score = 190 (71.9 bits), Expect = 5.2e-19, Sum P(2) = 5.2e-19
Identities = 53/168 (31%), Positives = 83/168 (49%)
Query: 105 HRDPSIRKS-GYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQ 162
H D R G N+ + L ++ L F++ G V S K+ D G S GYGFV
Sbjct: 8 HMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVN 67
Query: 163 FENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDED 222
+ N + A+ AI LNG+ + K + V F R + + + K N+Y++ L T+T +D
Sbjct: 68 YLNAKDAERAINTLNGLRLQSKTIKVS-FARP---SSETI--KDANLYISGLPRTMTQKD 121
Query: 223 LKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
++ +F FG I ++ V+ D + G SR F+ F A A+ NG
Sbjct: 122 VEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169
Score = 123 (48.4 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 36/103 (34%), Positives = 47/103 (45%)
Query: 87 EALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCK 146
+ F P+ + + S S SG+ +FI NL D L F FG V + K
Sbjct: 216 QRFRFSPMGVDHMSSISSVNVASSASSGWC-IFIYNLGQDADEGILWQMFGPFGAVTNVK 274
Query: 147 VAIDSN-GQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYV 188
V D N + KG+GFV N E A AI LNG + DK + V
Sbjct: 275 VIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQV 317
Score = 122 (48.0 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 31/91 (34%), Positives = 48/91 (52%)
Query: 305 EKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEA 363
E +K ANLY+ L ++ + ++++F FG I + +V+VDQ G S+G F F EA
Sbjct: 101 ETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEA 160
Query: 364 TRALNEMNG-KMIGR-KPLYVAVAQRKEERK 392
A+ NG K G +P+ V A + K
Sbjct: 161 EEAIASFNGHKPPGSSEPITVKFAANPNQSK 191
Score = 116 (45.9 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVE 265
TN+ VN L + +T ++L+ +F G + SA +++D G S +GFVN+ + A A+
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAIN 79
Query: 266 KLNGTTNNDKVWYVGRAQKRAE--READL 292
LNG K V A+ +E ++A+L
Sbjct: 80 TLNGLRLQSKTIKVSFARPSSETIKDANL 108
Score = 107 (42.7 bits), Expect = 4.3e-27, Sum P(2) = 4.3e-27
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
+++ NL + + L ++FG FG +T+ V++D + K + FGFV + + AA A+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 268 NGTTNNDKVWYV 279
NG DK V
Sbjct: 306 NGYRLGDKTLQV 317
Score = 105 (42.0 bits), Expect = 7.0e-27, Sum P(2) = 7.0e-27
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L ++F FG +T+ KV+ D + KG GF + EEA A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G K L V+ K +
Sbjct: 306 NGYRLGDKTLQVSFKTSKSHK 326
Score = 38 (18.4 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 59 VCRDQSKRSSLGYAYVNYSNPQD 81
VCRD R++L Y+ + QD
Sbjct: 12 VCRDDIGRTNLIVNYLPQNMTQD 34
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 279 (103.3 bits), Expect = 4.2e-21, Sum P(2) = 4.2e-21
Identities = 71/199 (35%), Positives = 110/199 (55%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEK 266
TNV+V +L DEDL+ +F +G + S+ VM D G S +GFV F SP +AAA+E+
Sbjct: 109 TNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVRFSSPQESAAAIEE 168
Query: 267 LNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKL 326
L+G Y + +K R ++L S+Y NL++K L + D++L
Sbjct: 169 LDG--------YQYQNKKLLCRLSNLYTNLN----SKYPS---NNLFIKPLPYDVTDDQL 213
Query: 327 KELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRK---PLYVA 383
++LF FG I CKVM+D +G SK +GF FS +A++A++ MNG I + PL V
Sbjct: 214 RKLFEPFGKIIECKVMLDHNGQSKFAGFVRFSSELDASKAIDAMNGVRINKDSGYPLVVK 273
Query: 384 VAQRKEERKARLQAQFAQI 402
A ++++ +R Q + I
Sbjct: 274 YADTEQQKISRKQRKMQTI 292
Score = 247 (92.0 bits), Expect = 8.1e-27, Sum P(2) = 8.1e-27
Identities = 63/178 (35%), Positives = 96/178 (53%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+++V L N+ L +LFS+ +V+S +V D K +S GY +V +S+PQ++A A E
Sbjct: 110 NVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDP-KGNSYGYGFVRFSSPQESAAAIEE 168
Query: 89 LNFMPINGKPIRIMYSHRDPSIR-KSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKV 147
L+ K + S+ ++ K N+FIK L + + L F FG ++ CKV
Sbjct: 169 LDGYQYQNKKLLCRLSNLYTNLNSKYPSNNLFIKPLPYDVTDDQLRKLFEPFGKIIECKV 228
Query: 148 AIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPK 205
+D NGQSK GFV+F +E A AI +NG+ IN Y L V+ + QQ +S K
Sbjct: 229 MLDHNGQSKFAGFVRFSSELDASKAIDAMNGVRINKDSGYP-LVVKYADTEQQKISRK 285
Score = 138 (53.6 bits), Expect = 8.1e-27, Sum P(2) = 8.1e-27
Identities = 32/80 (40%), Positives = 47/80 (58%)
Query: 311 NLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNE 369
NL++ +L ++D L +LFS+FG + S +V+ D+ G +KG GF F +EA + E
Sbjct: 770 NLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQKE 829
Query: 370 MNGKMIGRKPLYVAVAQRKE 389
MNG IG K L V + KE
Sbjct: 830 MNGFRIGSKFLKVKLKNEKE 849
Score = 104 (41.7 bits), Expect = 2.9e-23, Sum P(2) = 2.9e-23
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSD-GKSRCFGFVNFQSPDAAAAAVE 265
TN++V +L V D L ++F FG + S V+ D D G+++ +GFV F D A +
Sbjct: 769 TNLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQK 828
Query: 266 KLNG 269
++NG
Sbjct: 829 EMNG 832
Score = 49 (22.3 bits), Expect = 4.2e-21, Sum P(2) = 4.2e-21
Identities = 27/101 (26%), Positives = 43/101 (42%)
Query: 416 PGYHHGAPRLGPQQLYYGQGTPGLMPPQAAGY-GFQQQVFPG--LRPGGPNYIMP-YHLQ 471
P +HH QQ+Y+ P + P A Y Q+ P ++P P ++ LQ
Sbjct: 425 PNHHHHHQYYTTQQIYH---QP-IYYPTANYYTDIHHQIHPTQHIQPQQPQQLLQSQQLQ 480
Query: 472 -RQVHPGQRTGVRRSGNTHQMQQPQFMRNS------NQGIR 505
+Q+ P Q +++ Q QQ Q + + NQ IR
Sbjct: 481 SQQLQPQQ---LQQQLQQQQQQQQQLQQQNLNIEIPNQSIR 518
Score = 40 (19.1 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
Identities = 26/102 (25%), Positives = 35/102 (34%)
Query: 427 PQQLYYGQGTPG--LMPPQAAGY-GFQQQVFPGLRPGGPNYIMPYHLQRQVHPGQRTGVR 483
PQQL Q L P Q QQQ L+ N +P R + +
Sbjct: 470 PQQLLQSQQLQSQQLQPQQLQQQLQQQQQQQQQLQQQNLNIEIPNQSIRTSGGINKNNSK 529
Query: 484 RSGNTHQMQQPQFMRNSNQGIRYLDNARNGTDQSVVSMVPVP 525
+ HQ Q Q +NS Q I N + S ++ P
Sbjct: 530 KKKKKHQQVQSQTSQNSIQ-IASSSTPLNTSSSSTITSFGSP 570
Score = 39 (18.8 bits), Expect = 4.7e-20, Sum P(2) = 4.7e-20
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 489 HQMQQPQFMRNSNQGIRYLD 508
H Q P + N N Y++
Sbjct: 394 HSQQHPHLINNQNYYTNYME 413
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 240 (89.5 bits), Expect = 8.8e-27, Sum P(2) = 8.8e-27
Identities = 50/154 (32%), Positives = 84/154 (54%)
Query: 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANA 85
G +L V L QN+ + +L LFS + +V S ++ RD+ SLGY +VNY +DA A
Sbjct: 26 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 85
Query: 86 KEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSC 145
LN + + K I++ Y+ + K N++I L ++ K + D F+ FG +++
Sbjct: 86 INTLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSRFGRIINS 143
Query: 146 KVAID-SNGQSKGYGFVQFENEEAAQNAIKMLNG 178
+V +D + G S+G F++F+ A+ AI NG
Sbjct: 144 RVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 177
Score = 184 (69.8 bits), Expect = 4.5e-18, Sum P(2) = 4.5e-18
Identities = 49/158 (31%), Positives = 76/158 (48%)
Query: 114 GYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNA 172
G N+ + L ++ L F++ G V S K+ D G S GYGFV + + A+ A
Sbjct: 26 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 85
Query: 173 IKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGT 232
I LNG+ + K + V R V K N+Y++ L T+T +D++ +F FG
Sbjct: 86 INTLNGLRLQSKTIKVSY-----ARPSSEVI-KDANLYISGLPRTMTQKDVEDMFSRFGR 139
Query: 233 ITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
I ++ V+ D + G SR F+ F A A+ NG
Sbjct: 140 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 177
Score = 140 (54.3 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 71/260 (27%), Positives = 114/260 (43%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEK 266
+N Y +++AE D+ G I + + + + R F + ++A +K
Sbjct: 10 SNGYEDHMAEDCRDD-----IGRTNLIVNYLPQNMTQDELRSL-FSSIGEVESAKLIRDK 63
Query: 267 LNG-TTNNDKVWYVGRAQKRAEREAD----LRAKFEQERIS----RYEKLKGANLYLKNL 317
+ G + V YV K AER + LR + + ++S E +K ANLY+ L
Sbjct: 64 VAGHSLGYGFVNYV--TAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGL 121
Query: 318 DDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEMNG-KMI 375
++ + ++++FS FG I + +V+VDQ G S+G F F EA A+ NG K
Sbjct: 122 PRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPP 181
Query: 376 GR-KPLYVAVAQRKEERK--ARL-QAQFAQIRAPGGMSPLASGIPGYHHGAPRL--GPQQ 429
G +P+ V A + K A L Q + R GG P+ HH A R P
Sbjct: 182 GSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGG--PV-------HHQAQRFRFSPMG 232
Query: 430 LYYGQGTPGLMPPQAAGYGF 449
+ + G G+ P A G+
Sbjct: 233 VDHMSGLSGVNVPGNASSGW 252
Score = 122 (48.0 bits), Expect = 0.00018, P = 0.00018
Identities = 33/91 (36%), Positives = 42/91 (46%)
Query: 108 PSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSN-GQSKGYGFVQFENE 166
P SG+ +FI NL D L F FG V + KV D N + KG+GFV N
Sbjct: 245 PGNASSGWC-IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 303
Query: 167 EAAQNAIKMLNGMLINDKQVYVGLFVRRQER 197
E A AI LNG + DK + V + +
Sbjct: 304 EEAAMAIASLNGYRLGDKILQVSFKTNKSHK 334
Score = 110 (43.8 bits), Expect = 8.8e-27, Sum P(2) = 8.8e-27
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
+++ NL + + L ++FG FG +T+ V++D + K + FGFV + + AA A+ L
Sbjct: 254 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 313
Query: 268 NGTTNNDKVWYV 279
NG DK+ V
Sbjct: 314 NGYRLGDKILQV 325
Score = 104 (41.7 bits), Expect = 3.7e-26, Sum P(2) = 3.7e-26
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L ++F FG +T+ KV+ D + KG GF + EEA A+ +
Sbjct: 254 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 313
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G K L V+ K +
Sbjct: 314 NGYRLGDKILQVSFKTNKSHK 334
>ASPGD|ASPL0000000406 [details] [associations]
symbol:AN6501 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
Length = 352
Score = 271 (100.5 bits), Expect = 9.8e-27, Sum P(2) = 9.8e-27
Identities = 55/174 (31%), Positives = 104/174 (59%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
++Y+G+L++ V++S +++L Q ++V+V + +D+ +S GY +V +++ +DA A
Sbjct: 14 TVYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDAEYASRI 73
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSC-KV 147
+N + + GKPIR+ + D +F+ NLD + + L DTF+ FG +++ KV
Sbjct: 74 MNGIRLYGKPIRVNKASADKQKSVEIGAELFVGNLDPMVTEQVLYDTFSRFGNLVNLPKV 133
Query: 148 AIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQN 201
A D + SKGYGFV F + E++ AI +NG + +KQV V ++ + +++
Sbjct: 134 ARDDSNLSKGYGFVSFADFESSDAAIANMNGQYLMNKQVSVQYAYKKDGKGERH 187
Score = 192 (72.6 bits), Expect = 2.9e-12, P = 2.9e-12
Identities = 75/278 (26%), Positives = 118/278 (42%)
Query: 205 KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKS-RCFGFVNFQSPDAAAAA 263
K VY+ NL E V+D + ++ G I + + KD +S + +GFV F S + A A
Sbjct: 11 KEATVYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDAEYA 70
Query: 264 VEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIND 323
+NG K V +A ++ ++ GA L++ NLD + +
Sbjct: 71 SRIMNGIRLYGKPIRVNKASADKQKSVEI----------------GAELFVGNLDPMVTE 114
Query: 324 EKLKELFSEFGTITSC-KVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYV 382
+ L + FS FG + + KV D SKG GF +F+ E + A+ MNG+ + K + V
Sbjct: 115 QVLYDTFSRFGNLVNLPKVARDDSNLSKGYGFVSFADFESSDAAIANMNGQYLMNKQVSV 174
Query: 383 AVAQRKE----------ERKARLQAQFAQIRAPGGM------SPLASGIPGYHHGAPRLG 426
A +K+ ER QA+ ++ P +P A +P G
Sbjct: 175 QYAYKKDGKGERHGDQAERMLAAQARKHNVQVPTQALPPQFTAPAAPAMPADMSRPMSTG 234
Query: 427 PQQLYYGQGTPGLMPPQAAGYGFQQQVFPGL-RPGGPN 463
P G G ++PPQ G+ L RPG P+
Sbjct: 235 PAD--QGMGRVPMLPPQLVGFSPNVATQQSLARPGLPS 270
Score = 111 (44.1 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 29/96 (30%), Positives = 51/96 (53%)
Query: 304 YEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFS-KGSGFAAFSMPEE 362
+E+ K A +Y+ NLD+ ++D + EL + G I + + D+ S +G GF F+ E+
Sbjct: 7 WEQDKEATVYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEED 66
Query: 363 ATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQ 398
A A MNG + KP+ V A +++ + A+
Sbjct: 67 AEYASRIMNGIRLYGKPIRVNKASADKQKSVEIGAE 102
Score = 60 (26.2 bits), Expect = 9.8e-27, Sum P(2) = 9.8e-27
Identities = 17/34 (50%), Positives = 17/34 (50%)
Query: 435 GTPGLMPPQAAGYGFQQQVF--PGLRPGG--PNY 464
G P PP AGYG QVF PGL G P Y
Sbjct: 279 GLPARPPPSQAGYG-GPQVFLPPGLNNSGQQPQY 311
Score = 48 (22.0 bits), Expect = 1.8e-25, Sum P(2) = 1.8e-25
Identities = 16/44 (36%), Positives = 19/44 (43%)
Query: 396 QAQFA-QIRAPGGMSPLASGIPGYHHGAPRLGP---QQLYYGQG 435
Q Q+ Q P G +P G P G P P QQ YG+G
Sbjct: 308 QPQYTPQAAPPPGFAPPGFGTPSGSSGPPPPMPPGFQQPGYGRG 351
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 281 (104.0 bits), Expect = 1.8e-26, Sum P(2) = 1.8e-26
Identities = 78/262 (29%), Positives = 130/262 (49%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+LYVG+L ++V E + LFSQ+ S ++ + + Y +V + +DAA A A
Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAA 67
Query: 89 LNFMPINGKPIRIMYSHRDPSIRK--SGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCK 146
+N I GK +++ ++ S +K S + +VF+ +L I + + FA FG + +
Sbjct: 68 MNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDAR 127
Query: 147 VAID-SNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQ---ERAQQN- 201
V D + G+SKGYGFV F N+ A+NAI + G + +Q+ R+ + Q+N
Sbjct: 128 VVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENN 187
Query: 202 ------------VSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCF 249
SPK VY +A +TD+ +++ F FG I V + +
Sbjct: 188 TKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG-----Y 242
Query: 250 GFVNFQSPDAAAAAVEKLNGTT 271
FV F + ++AA A+ +NGTT
Sbjct: 243 SFVRFSTHESAAHAIVSVNGTT 264
Score = 241 (89.9 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 72/265 (27%), Positives = 121/265 (45%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
+++ NL + + F+ G SCK+ I + + Y FV+F A A+ +N
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKM-ITEHTSNDPYCFVEFYEHRDAAAALAAMN 69
Query: 178 GMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAI 237
G I K+V V + +++ S F +V+V +L+ +T ED+K F FG I+ A
Sbjct: 70 GRKILGKEVKVN-WATTPSSQKKDTSNHF-HVFVGDLSPEITTEDIKSAFAPFGKISDAR 127
Query: 238 VMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKV----WYVGR--AQKRAEREA 290
V+KD + GKS+ +GFV+F + A A+ + G + W + A K +
Sbjct: 128 VVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENN 187
Query: 291 DLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSK 350
+ +FE + K +Y + + D+ +++ FS FG I +V + K
Sbjct: 188 TKQLRFED--VVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----K 240
Query: 351 GSGFAAFSMPEEATRALNEMNGKMI 375
G F FS E A A+ +NG I
Sbjct: 241 GYSFVRFSTHESAAHAIVSVNGTTI 265
Score = 138 (53.6 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 49/182 (26%), Positives = 81/182 (44%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSA-IVMKDSDGKSRCFGFVNFQSPDAAAAAVEKL 267
+YV NL+ VT+ + ++F G S ++ + + CF V F AAAA+ +
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCF--VEFYEHRDAAAALAAM 68
Query: 268 NGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLK 327
NG K V A + ++ D F ++++ +L I E +K
Sbjct: 69 NGRKILGKEVKVNWATTPSSQKKDTSNHF--------------HVFVGDLSPEITTEDIK 114
Query: 328 ELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386
F+ FG I+ +V+ D G SKG GF +F +A A+ M G+ +G + + A
Sbjct: 115 SAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWAT 174
Query: 387 RK 388
RK
Sbjct: 175 RK 176
Score = 135 (52.6 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 45/167 (26%), Positives = 71/167 (42%)
Query: 30 LYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL 89
++VGDL + + F+ ++ RV +D + S GY +V++ N DA NA +
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 90 NFMPINGKPIRIMYSHRDPSIRKSGYGNV-----F--IKNLDTSIDNKALCDTFAAFGTV 142
+ G+ IR ++ R P KS N F + N + + C A+ T
Sbjct: 159 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 218
Query: 143 LSCKVAIDSNGQ--------SKGYGFVQFENEEAAQNAIKMLNGMLI 181
+ GQ KGY FV+F E+A +AI +NG I
Sbjct: 219 QLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTI 265
Score = 47 (21.6 bits), Expect = 1.8e-26, Sum P(2) = 1.8e-26
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 409 SPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPP-QAAGYG 448
SP A+ + G+ GA P Q GQ P ++PP AGYG
Sbjct: 341 SPSAAWMGGF--GAQ---PPQ---GQAPPPVIPPPNQAGYG 373
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 281 (104.0 bits), Expect = 1.8e-26, Sum P(2) = 1.8e-26
Identities = 78/262 (29%), Positives = 130/262 (49%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+LYVG+L ++V E + LFSQ+ S ++ + + Y +V + +DAA A A
Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAA 67
Query: 89 LNFMPINGKPIRIMYSHRDPSIRK--SGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCK 146
+N I GK +++ ++ S +K S + +VF+ +L I + + FA FG + +
Sbjct: 68 MNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDAR 127
Query: 147 VAID-SNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQ---ERAQQN- 201
V D + G+SKGYGFV F N+ A+NAI + G + +Q+ R+ + Q+N
Sbjct: 128 VVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENN 187
Query: 202 ------------VSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCF 249
SPK VY +A +TD+ +++ F FG I V + +
Sbjct: 188 TKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG-----Y 242
Query: 250 GFVNFQSPDAAAAAVEKLNGTT 271
FV F + ++AA A+ +NGTT
Sbjct: 243 SFVRFSTHESAAHAIVSVNGTT 264
Score = 241 (89.9 bits), Expect = 8.8e-19, Sum P(2) = 8.8e-19
Identities = 72/265 (27%), Positives = 121/265 (45%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
+++ NL + + F+ G SCK+ I + + Y FV+F A A+ +N
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKM-ITEHTSNDPYCFVEFYEHRDAAAALAAMN 69
Query: 178 GMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAI 237
G I K+V V + +++ S F +V+V +L+ +T ED+K F FG I+ A
Sbjct: 70 GRKILGKEVKVN-WATTPSSQKKDTSNHF-HVFVGDLSPEITTEDIKSAFAPFGKISDAR 127
Query: 238 VMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKV----WYVGR--AQKRAEREA 290
V+KD + GKS+ +GFV+F + A A+ + G + W + A K +
Sbjct: 128 VVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENN 187
Query: 291 DLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSK 350
+ +FE + K +Y + + D+ +++ FS FG I +V + K
Sbjct: 188 TKQLRFED--VVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----K 240
Query: 351 GSGFAAFSMPEEATRALNEMNGKMI 375
G F FS E A A+ +NG I
Sbjct: 241 GYSFVRFSTHESAAHAIVSVNGTTI 265
Score = 138 (53.6 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 49/182 (26%), Positives = 81/182 (44%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSA-IVMKDSDGKSRCFGFVNFQSPDAAAAAVEKL 267
+YV NL+ VT+ + ++F G S ++ + + CF V F AAAA+ +
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCF--VEFYEHRDAAAALAAM 68
Query: 268 NGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLK 327
NG K V A + ++ D F ++++ +L I E +K
Sbjct: 69 NGRKILGKEVKVNWATTPSSQKKDTSNHF--------------HVFVGDLSPEITTEDIK 114
Query: 328 ELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386
F+ FG I+ +V+ D G SKG GF +F +A A+ M G+ +G + + A
Sbjct: 115 SAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWAT 174
Query: 387 RK 388
RK
Sbjct: 175 RK 176
Score = 135 (52.6 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 45/167 (26%), Positives = 71/167 (42%)
Query: 30 LYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL 89
++VGDL + + F+ ++ RV +D + S GY +V++ N DA NA +
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 90 NFMPINGKPIRIMYSHRDPSIRKSGYGNV-----F--IKNLDTSIDNKALCDTFAAFGTV 142
+ G+ IR ++ R P KS N F + N + + C A+ T
Sbjct: 159 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 218
Query: 143 LSCKVAIDSNGQ--------SKGYGFVQFENEEAAQNAIKMLNGMLI 181
+ GQ KGY FV+F E+A +AI +NG I
Sbjct: 219 QLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTI 265
Score = 47 (21.6 bits), Expect = 1.8e-26, Sum P(2) = 1.8e-26
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 409 SPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPP-QAAGYG 448
SP A+ + G+ GA P Q GQ P ++PP AGYG
Sbjct: 336 SPSAAWMGGF--GAQ---PPQ---GQAPPPVIPPPNQAGYG 368
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 236 (88.1 bits), Expect = 2.8e-26, Sum P(2) = 2.8e-26
Identities = 51/154 (33%), Positives = 83/154 (53%)
Query: 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANA 85
G +L V L QN+ + +L LFS + +V S ++ RD+ SLGY +VNY N +DA A
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERA 77
Query: 86 KEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSC 145
LN + + K I++ + PS N++I L ++ K + D F FG +++
Sbjct: 78 INTLNGLRLQSKTIKVSVAR--PSSESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINS 135
Query: 146 KVAID-SNGQSKGYGFVQFENEEAAQNAIKMLNG 178
+V +D + G S+G F++F+ A+ AI NG
Sbjct: 136 RVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169
Score = 190 (71.9 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 54/168 (32%), Positives = 82/168 (48%)
Query: 105 HRDPSIRKS-GYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQ 162
H D R G N+ + L ++ L F++ G V S K+ D G S GYGFV
Sbjct: 8 HMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVN 67
Query: 163 FENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDED 222
+ N + A+ AI LNG+ + K + V V R + S K N+Y++ L T+T +D
Sbjct: 68 YLNAKDAERAINTLNGLRLQSKTIKVS--VARPS----SESIKDANLYISGLPRTMTQKD 121
Query: 223 LKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
++ +F FG I ++ V+ D + G SR F+ F A A+ NG
Sbjct: 122 VEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169
Score = 125 (49.1 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 31/91 (34%), Positives = 48/91 (52%)
Query: 305 EKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEA 363
E +K ANLY+ L ++ + ++++F FG I + +V+VDQ G S+G F F EA
Sbjct: 101 ESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEA 160
Query: 364 TRALNEMNG-KMIGR-KPLYVAVAQRKEERK 392
A+ NG K G +P+ V A + K
Sbjct: 161 EEAIASFNGHKPPGSSEPITVKFAANPNQNK 191
Score = 121 (47.7 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 33/81 (40%), Positives = 40/81 (49%)
Query: 109 SIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSN-GQSKGYGFVQFENEE 167
S SG+ +FI NL D L F FG V + KV D N + KG+GFV N E
Sbjct: 238 SSASSGWC-IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYE 296
Query: 168 AAQNAIKMLNGMLINDKQVYV 188
A AI LNG + DK + V
Sbjct: 297 EAAMAIASLNGYRLGDKTLQV 317
Score = 119 (46.9 bits), Expect = 0.00037, P = 0.00037
Identities = 27/81 (33%), Positives = 46/81 (56%)
Query: 311 NLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNE 369
NL + L ++ ++L+ LFS G + S K++ D+ G S G GF + ++A RA+N
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINT 80
Query: 370 MNGKMIGRKPLYVAVAQRKEE 390
+NG + K + V+VA+ E
Sbjct: 81 LNGLRLQSKTIKVSVARPSSE 101
Score = 116 (45.9 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVE 265
TN+ VN L + +T ++L+ +F G + SA +++D G S +GFVN+ + A A+
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAIN 79
Query: 266 KLNGTTNNDKVWYVGRAQKRAE--READL 292
LNG K V A+ +E ++A+L
Sbjct: 80 TLNGLRLQSKTIKVSVARPSSESIKDANL 108
Score = 107 (42.7 bits), Expect = 2.8e-26, Sum P(2) = 2.8e-26
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
+++ NL + + L ++FG FG +T+ V++D + K + FGFV + + AA A+ L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 268 NGTTNNDKVWYV 279
NG DK V
Sbjct: 306 NGYRLGDKTLQV 317
Score = 102 (41.0 bits), Expect = 9.4e-26, Sum P(2) = 9.4e-26
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L ++F FG +T+ KV+ D + KG GF + EEA A+ +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G K L V K +
Sbjct: 306 NGYRLGDKTLQVFFKTSKSHK 326
Score = 38 (18.4 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 59 VCRDQSKRSSLGYAYVNYSNPQD 81
VCRD R++L Y+ + QD
Sbjct: 12 VCRDDIGRTNLIVNYLPQNMTQD 34
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 244 (91.0 bits), Expect = 2.9e-26, Sum P(2) = 2.9e-26
Identities = 52/161 (32%), Positives = 88/161 (54%)
Query: 21 VPSGY--GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSN 78
+P+G +L V L QN+ + +L LF + ++ S ++ RD+ SLGY +VNY
Sbjct: 59 MPNGSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYME 118
Query: 79 PQDAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAA 138
P+DA A LN + + K I++ Y+ PS N+++ L ++ K L F+
Sbjct: 119 PKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQ 176
Query: 139 FGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKMLNG 178
FG +++ ++ +D G S+G GF++F+ A+ AIK LNG
Sbjct: 177 FGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNG 217
Score = 212 (79.7 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
Identities = 52/155 (33%), Positives = 83/155 (53%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+ + L ++ + L F + G + SCK+ D GQS GYGFV + + A+ AI
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINT 128
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI-T 234
LNG+ + K + V + R + S + N+YV+ L +T+T ++L+++F FG I T
Sbjct: 129 LNGLRLQTKTIKVS-YAR-----PSSASIRDANLYVSGLPKTMTQKELEQLFSQFGRIIT 182
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
S I++ G SR GF+ F A A++ LNG
Sbjct: 183 SRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNG 217
Score = 167 (63.8 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 88/313 (28%), Positives = 134/313 (42%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVE 265
TN+ VN L + +T E+LK +FG G I S +++D G+S +GFVN+ P A A+
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAIN 127
Query: 266 KLNGT---TNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
LNG T KV Y R + R+A+L +S K + K L
Sbjct: 128 TLNGLRLQTKTIKVSYA-RPSSASIRDANLY-------VSGLPK----TMTQKEL----- 170
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG-KMIGR-KPL 380
E+L F ITS ++ G S+G GF F EA A+ +NG K G +P+
Sbjct: 171 -EQLFSQFGRI--ITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPI 227
Query: 381 YVAVAQRKEERKAR-LQAQFAQI---RAPGGMSPLAS-----GIPGYHHGAPRLGPQQLY 431
V A ++ ++ L + Q R PG ++ A + +G R P +
Sbjct: 228 TVKFANNPSQKSSQALLSHLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKRFSPMTID 287
Query: 432 YGQGTPGLMPPQAAGYGFQQQVFPGLRPGGPNYIMPYHLQRQVHP-GQRTGVR--RSGNT 488
G+ P AG G+ V+ L P + L + P G T V+ R NT
Sbjct: 288 GVTSLAGINLPAHAGTGWCIFVY-NLAPDADENV----LWQMFGPFGAVTNVKVIRDFNT 342
Query: 489 HQMQQPQFMRNSN 501
++ + F+ +N
Sbjct: 343 NKCKGFGFVTMTN 355
Score = 117 (46.2 bits), Expect = 2.9e-26, Sum P(2) = 2.9e-26
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NLA + L ++FG FG +T+ V++D + K + FGFV + D AA A+ L
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 268 NGTTNNDKVWYV 279
NG D+V V
Sbjct: 367 NGYRLGDRVLQV 378
Score = 117 (46.2 bits), Expect = 0.00085, P = 0.00085
Identities = 28/82 (34%), Positives = 39/82 (47%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSN-GQSKGYGFVQFENEEAAQNAIKML 176
+F+ NL D L F FG V + KV D N + KG+GFV N + A AI L
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 177 NGMLINDKQVYVGLFVRRQERA 198
NG + D+ + V + +A
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHKA 388
Score = 96 (38.9 bits), Expect = 4.5e-24, Sum P(2) = 4.5e-24
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L ++F FG +T+ KV+ D + KG GF + +EA A+ +
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G + L V+ K +
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 237 (88.5 bits), Expect = 3.8e-26, Sum P(2) = 3.8e-26
Identities = 49/151 (32%), Positives = 85/151 (56%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+L V L QN+ + +L LF + ++ S ++ RD+ SLGY +VNY +P+DA A
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN + + K I++ Y+ PS N+++ L ++ K L F+ +G +++ ++
Sbjct: 100 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 157
Query: 149 IDS-NGQSKGYGFVQFENEEAAQNAIKMLNG 178
+D G S+G GF++F+ A+ AIK LNG
Sbjct: 158 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 209 (78.6 bits), Expect = 2.6e-20, Sum P(2) = 2.6e-20
Identities = 51/155 (32%), Positives = 84/155 (54%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+ + L ++ + L F + G + SCK+ D GQS GYGFV + + + A+ AI
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI-T 234
LNG+ + K + V + R + S + N+YV+ L +T+T ++L+++F +G I T
Sbjct: 100 LNGLRLQTKTIKVS-YAR-----PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
S I++ G SR GF+ F A A++ LNG
Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 153 (58.9 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 66/217 (30%), Positives = 98/217 (45%)
Query: 201 NVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDA 259
N TN+ VN L + +T E+LK +FG G I S +++D G+S +GFVN+ P
Sbjct: 33 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 260 AAAAVEKLNGT---TNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKN 316
A A+ LNG T KV Y R + R+A+L +S K + K
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYA-RPSSASIRDANLY-------VSGLPK----TMTQKE 140
Query: 317 LDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG-KMI 375
L E+L + ITS ++ G S+G GF F EA A+ +NG K
Sbjct: 141 L------EQLFSQYGRI--ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPP 192
Query: 376 GR-KPLYVAVAQRKEERKARLQAQFAQI-RAPGGMSP 410
G +P+ V A ++ QA +Q+ ++P P
Sbjct: 193 GATEPITVKFANNPSQKTN--QAILSQLYQSPNRRYP 227
Score = 122 (48.0 bits), Expect = 0.00020, P = 0.00020
Identities = 39/138 (28%), Positives = 58/138 (42%)
Query: 62 DQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIK 121
+Q+ S L Y N P A + F P+ + + P +G+ +F+
Sbjct: 211 NQAILSQL-YQSPNRRYPGPLAQQAQRFRFSPMTIDGMTSLAGINIPGHPGTGWC-IFVY 268
Query: 122 NLDTSIDNKALCDTFAAFGTVLSCKVAIDSN-GQSKGYGFVQFENEEAAQNAIKMLNGML 180
NL D L F FG V + KV D N + KG+GFV N + A AI LNG
Sbjct: 269 NLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYR 328
Query: 181 INDKQVYVGLFVRRQERA 198
+ D+ + V + +A
Sbjct: 329 LGDRVLQVSFKTNKTHKA 346
Score = 116 (45.9 bits), Expect = 3.8e-26, Sum P(2) = 3.8e-26
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NLA + L ++FG FG +T+ V++D + K + FGFV + D AA A+ L
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 268 NGTTNNDKVWYV 279
NG D+V V
Sbjct: 325 NGYRLGDRVLQV 336
Score = 97 (39.2 bits), Expect = 3.7e-24, Sum P(2) = 3.7e-24
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L ++F FG +T+ KV+ D + KG GF + +EA A+ +
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G + L V+ K +
Sbjct: 325 NGYRLGDRVLQVSFKTNKTHK 345
Score = 94 (38.1 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ +LYV L + + + +L LFSQ ++++ R+ DQ S G ++ + +A A
Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183
Query: 87 EALNFMPING--KPIRIMYSHRDPS 109
+ LN G +PI + +++ +PS
Sbjct: 184 KGLNGQKPPGATEPITVKFAN-NPS 207
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 237 (88.5 bits), Expect = 9.0e-26, Sum P(2) = 9.0e-26
Identities = 49/151 (32%), Positives = 85/151 (56%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+L V L QN+ + +L LF + ++ S ++ RD+ SLGY +VNY +P+DA A
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN + + K I++ Y+ PS N+++ L ++ K L F+ +G +++ ++
Sbjct: 100 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 157
Query: 149 IDS-NGQSKGYGFVQFENEEAAQNAIKMLNG 178
+D G S+G GF++F+ A+ AIK LNG
Sbjct: 158 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 209 (78.6 bits), Expect = 3.8e-20, Sum P(2) = 3.8e-20
Identities = 51/155 (32%), Positives = 84/155 (54%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+ + L ++ + L F + G + SCK+ D GQS GYGFV + + + A+ AI
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI-T 234
LNG+ + K + V + R + S + N+YV+ L +T+T ++L+++F +G I T
Sbjct: 100 LNGLRLQTKTIKVS-YAR-----PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
S I++ G SR GF+ F A A++ LNG
Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 157 (60.3 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 88/319 (27%), Positives = 134/319 (42%)
Query: 201 NVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDA 259
N TN+ VN L + +T E+LK +FG G I S +++D G+S +GFVN+ P
Sbjct: 33 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 260 AAAAVEKLNGT---TNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKN 316
A A+ LNG T KV Y R + R+A+L +S K + K
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYA-RPSSASIRDANLY-------VSGLPK----TMTQKE 140
Query: 317 LDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG-KMI 375
L E+L + ITS ++ G S+G GF F EA A+ +NG K
Sbjct: 141 L------EQLFSQYGRI--ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPP 192
Query: 376 GR-KPLYVAVAQRKEERKAR-LQAQFAQI---RAPGGMSPLAS-----GIPGYHHGAPRL 425
G +P+ V A ++ + + +Q Q R PG ++ A + +G R
Sbjct: 193 GATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKRF 252
Query: 426 GPQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGPNYIMPYHLQRQVHP-GQRTGVR- 483
P + G+ P G G+ V+ L P I L + P G T V+
Sbjct: 253 SPMTIDGMTSLAGINIPGHPGTGWCIFVY-NLAPDADESI----LWQMFGPFGAVTNVKV 307
Query: 484 -RSGNTHQMQQPQFMRNSN 501
R NT++ + F+ +N
Sbjct: 308 IRDFNTNKCKGFGFVTMTN 326
Score = 117 (46.2 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 28/82 (34%), Positives = 39/82 (47%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSN-GQSKGYGFVQFENEEAAQNAIKML 176
+F+ NL D L F FG V + KV D N + KG+GFV N + A AI L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 177 NGMLINDKQVYVGLFVRRQERA 198
NG + D+ + V + +A
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHKA 359
Score = 116 (45.9 bits), Expect = 9.0e-26, Sum P(2) = 9.0e-26
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NLA + L ++FG FG +T+ V++D + K + FGFV + D AA A+ L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 268 NGTTNNDKVWYV 279
NG D+V V
Sbjct: 338 NGYRLGDRVLQV 349
Score = 97 (39.2 bits), Expect = 8.7e-24, Sum P(2) = 8.7e-24
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L ++F FG +T+ KV+ D + KG GF + +EA A+ +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G + L V+ K +
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
Score = 94 (38.1 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ +LYV L + + + +L LFSQ ++++ R+ DQ S G ++ + +A A
Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183
Query: 87 EALNFMPING--KPIRIMYSHRDPS 109
+ LN G +PI + +++ +PS
Sbjct: 184 KGLNGQKPPGATEPITVKFAN-NPS 207
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 237 (88.5 bits), Expect = 9.5e-26, Sum P(2) = 9.5e-26
Identities = 49/151 (32%), Positives = 85/151 (56%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+L V L QN+ + +L LF + ++ S ++ RD+ SLGY +VNY +P+DA A
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN + + K I++ Y+ PS N+++ L ++ K L F+ +G +++ ++
Sbjct: 100 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 157
Query: 149 IDS-NGQSKGYGFVQFENEEAAQNAIKMLNG 178
+D G S+G GF++F+ A+ AIK LNG
Sbjct: 158 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 209 (78.6 bits), Expect = 3.9e-20, Sum P(2) = 3.9e-20
Identities = 51/155 (32%), Positives = 84/155 (54%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+ + L ++ + L F + G + SCK+ D GQS GYGFV + + + A+ AI
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI-T 234
LNG+ + K + V + R + S + N+YV+ L +T+T ++L+++F +G I T
Sbjct: 100 LNGLRLQTKTIKVS-YAR-----PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
S I++ G SR GF+ F A A++ LNG
Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 153 (58.9 bits), Expect = 7.7e-08, P = 7.7e-08
Identities = 66/217 (30%), Positives = 98/217 (45%)
Query: 201 NVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDA 259
N TN+ VN L + +T E+LK +FG G I S +++D G+S +GFVN+ P
Sbjct: 33 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 260 AAAAVEKLNGT---TNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKN 316
A A+ LNG T KV Y R + R+A+L +S K + K
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYA-RPSSASIRDANLY-------VSGLPK----TMTQKE 140
Query: 317 LDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG-KMI 375
L E+L + ITS ++ G S+G GF F EA A+ +NG K
Sbjct: 141 L------EQLFSQYGRI--ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPP 192
Query: 376 GR-KPLYVAVAQRKEERKARLQAQFAQI-RAPGGMSP 410
G +P+ V A ++ QA +Q+ ++P P
Sbjct: 193 GATEPITVKFANNPSQKTN--QAILSQLYQSPNRRYP 227
Score = 117 (46.2 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 28/82 (34%), Positives = 39/82 (47%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSN-GQSKGYGFVQFENEEAAQNAIKML 176
+F+ NL D L F FG V + KV D N + KG+GFV N + A AI L
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 177 NGMLINDKQVYVGLFVRRQERA 198
NG + D+ + V + +A
Sbjct: 339 NGYRLGDRVLQVSFKTNKTHKA 360
Score = 116 (45.9 bits), Expect = 9.5e-26, Sum P(2) = 9.5e-26
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NLA + L ++FG FG +T+ V++D + K + FGFV + D AA A+ L
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 268 NGTTNNDKVWYV 279
NG D+V V
Sbjct: 339 NGYRLGDRVLQV 350
Score = 97 (39.2 bits), Expect = 9.2e-24, Sum P(2) = 9.2e-24
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L ++F FG +T+ KV+ D + KG GF + +EA A+ +
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G + L V+ K +
Sbjct: 339 NGYRLGDRVLQVSFKTNKTHK 359
Score = 94 (38.1 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ +LYV L + + + +L LFSQ ++++ R+ DQ S G ++ + +A A
Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183
Query: 87 EALNFMPING--KPIRIMYSHRDPS 109
+ LN G +PI + +++ +PS
Sbjct: 184 KGLNGQKPPGATEPITVKFAN-NPS 207
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 240 (89.5 bits), Expect = 9.7e-26, Sum P(2) = 9.7e-26
Identities = 50/154 (32%), Positives = 84/154 (54%)
Query: 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANA 85
G +L V L QN+ + +L LFS + +V S ++ RD+ SLGY +VNY +DA A
Sbjct: 45 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 104
Query: 86 KEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSC 145
LN + + K I++ Y+ + K N++I L ++ K + D F+ FG +++
Sbjct: 105 INTLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSRFGRIINS 162
Query: 146 KVAID-SNGQSKGYGFVQFENEEAAQNAIKMLNG 178
+V +D + G S+G F++F+ A+ AI NG
Sbjct: 163 RVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 196
Score = 184 (69.8 bits), Expect = 6.7e-18, Sum P(2) = 6.7e-18
Identities = 49/158 (31%), Positives = 76/158 (48%)
Query: 114 GYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNA 172
G N+ + L ++ L F++ G V S K+ D G S GYGFV + + A+ A
Sbjct: 45 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 104
Query: 173 IKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGT 232
I LNG+ + K + V R V K N+Y++ L T+T +D++ +F FG
Sbjct: 105 INTLNGLRLQSKTIKVSY-----ARPSSEVI-KDANLYISGLPRTMTQKDVEDMFSRFGR 158
Query: 233 ITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
I ++ V+ D + G SR F+ F A A+ NG
Sbjct: 159 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 196
Score = 139 (54.0 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
Identities = 49/153 (32%), Positives = 72/153 (47%)
Query: 305 EKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEA 363
E +K ANLY+ L ++ + ++++FS FG I + +V+VDQ G S+G F F EA
Sbjct: 128 EVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEA 187
Query: 364 TRALNEMNG-KMIGR-KPLYVAVAQRKEERK--ARL-QAQFAQIRAPGGMSPLASGIPGY 418
A+ NG K G +P+ V A + K A L Q + R GG P+
Sbjct: 188 EEAITSFNGHKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGG--PV------- 238
Query: 419 HHGAPRL--GPQQLYYGQGTPGLMPPQAAGYGF 449
HH A R P + + G G+ P A G+
Sbjct: 239 HHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGW 271
Score = 122 (48.0 bits), Expect = 0.00020, P = 0.00020
Identities = 33/91 (36%), Positives = 42/91 (46%)
Query: 108 PSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSN-GQSKGYGFVQFENE 166
P SG+ +FI NL D L F FG V + KV D N + KG+GFV N
Sbjct: 264 PGNASSGWC-IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 322
Query: 167 EAAQNAIKMLNGMLINDKQVYVGLFVRRQER 197
E A AI LNG + DK + V + +
Sbjct: 323 EEAAMAIASLNGYRLGDKILQVSFKTNKSHK 353
Score = 117 (46.2 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVE 265
TN+ VN L + +T ++L+ +F G + SA +++D G S +GFVN+ + A A+
Sbjct: 47 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 106
Query: 266 KLNGTTNNDKVWYVGRAQKRAE--READL 292
LNG K V A+ +E ++A+L
Sbjct: 107 TLNGLRLQSKTIKVSYARPSSEVIKDANL 135
Score = 110 (43.8 bits), Expect = 9.7e-26, Sum P(2) = 9.7e-26
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
+++ NL + + L ++FG FG +T+ V++D + K + FGFV + + AA A+ L
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 332
Query: 268 NGTTNNDKVWYV 279
NG DK+ V
Sbjct: 333 NGYRLGDKILQV 344
Score = 104 (41.7 bits), Expect = 4.1e-25, Sum P(2) = 4.1e-25
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L ++F FG +T+ KV+ D + KG GF + EEA A+ +
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 332
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G K L V+ K +
Sbjct: 333 NGYRLGDKILQVSFKTNKSHK 353
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 237 (88.5 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
Identities = 49/151 (32%), Positives = 85/151 (56%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+L V L QN+ + +L LF + ++ S ++ RD+ SLGY +VNY +P+DA A
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 128
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN + + K I++ Y+ PS N+++ L ++ K L F+ +G +++ ++
Sbjct: 129 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 186
Query: 149 IDS-NGQSKGYGFVQFENEEAAQNAIKMLNG 178
+D G S+G GF++F+ A+ AIK LNG
Sbjct: 187 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Score = 209 (78.6 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 51/155 (32%), Positives = 84/155 (54%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+ + L ++ + L F + G + SCK+ D GQS GYGFV + + + A+ AI
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 128
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI-T 234
LNG+ + K + V + R + S + N+YV+ L +T+T ++L+++F +G I T
Sbjct: 129 LNGLRLQTKTIKVS-YAR-----PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 182
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
S I++ G SR GF+ F A A++ LNG
Sbjct: 183 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Score = 153 (58.9 bits), Expect = 9.1e-08, P = 9.1e-08
Identities = 66/217 (30%), Positives = 98/217 (45%)
Query: 201 NVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDA 259
N TN+ VN L + +T E+LK +FG G I S +++D G+S +GFVN+ P
Sbjct: 62 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 121
Query: 260 AAAAVEKLNGT---TNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKN 316
A A+ LNG T KV Y R + R+A+L +S K + K
Sbjct: 122 AEKAINTLNGLRLQTKTIKVSYA-RPSSASIRDANLY-------VSGLPK----TMTQKE 169
Query: 317 LDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG-KMI 375
L E+L + ITS ++ G S+G GF F EA A+ +NG K
Sbjct: 170 L------EQLFSQYGRI--ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPP 221
Query: 376 GR-KPLYVAVAQRKEERKARLQAQFAQI-RAPGGMSP 410
G +P+ V A ++ QA +Q+ ++P P
Sbjct: 222 GATEPITVKFANNPSQKTN--QAILSQLYQSPNRRYP 256
Score = 120 (47.3 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
Identities = 28/77 (36%), Positives = 43/77 (55%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NLA + L ++FG FG +T+ V++D + K + FGFV + D AA A+ L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 268 NGTTNNDKVWYVGRAQK 284
NG D+V V + K
Sbjct: 368 NGYRLGDRVLQVFKTNK 384
Score = 113 (44.8 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 27/72 (37%), Positives = 36/72 (50%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSN-GQSKGYGFVQFENEEAAQNAIKML 176
+F+ NL D L F FG V + KV D N + KG+GFV N + A AI L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 177 NGMLINDKQVYV 188
NG + D+ + V
Sbjct: 368 NGYRLGDRVLQV 379
Score = 94 (38.1 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ +LYV L + + + +L LFSQ ++++ R+ DQ S G ++ + +A A
Sbjct: 153 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 212
Query: 87 EALNFMPING--KPIRIMYSHRDPS 109
+ LN G +PI + +++ +PS
Sbjct: 213 KGLNGQKPPGATEPITVKFAN-NPS 236
Score = 93 (37.8 bits), Expect = 7.2e-23, Sum P(2) = 7.2e-23
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L ++F FG +T+ KV+ D + KG GF + +EA A+ +
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 371 NGKMIGRKPLYV 382
NG +G + L V
Sbjct: 368 NGYRLGDRVLQV 379
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 237 (88.5 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 49/151 (32%), Positives = 85/151 (56%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+L V L QN+ + +L LF + ++ S ++ RD+ SLGY +VNY +P+DA A
Sbjct: 68 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 127
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN + + K I++ Y+ PS N+++ L ++ K L F+ +G +++ ++
Sbjct: 128 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 185
Query: 149 IDS-NGQSKGYGFVQFENEEAAQNAIKMLNG 178
+D G S+G GF++F+ A+ AIK LNG
Sbjct: 186 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 216
Score = 209 (78.6 bits), Expect = 7.2e-20, Sum P(2) = 7.2e-20
Identities = 51/155 (32%), Positives = 84/155 (54%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+ + L ++ + L F + G + SCK+ D GQS GYGFV + + + A+ AI
Sbjct: 68 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 127
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI-T 234
LNG+ + K + V + R + S + N+YV+ L +T+T ++L+++F +G I T
Sbjct: 128 LNGLRLQTKTIKVS-YAR-----PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 181
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
S I++ G SR GF+ F A A++ LNG
Sbjct: 182 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 216
Score = 157 (60.3 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 88/319 (27%), Positives = 134/319 (42%)
Query: 201 NVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDA 259
N TN+ VN L + +T E+LK +FG G I S +++D G+S +GFVN+ P
Sbjct: 61 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 120
Query: 260 AAAAVEKLNGT---TNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKN 316
A A+ LNG T KV Y R + R+A+L +S K + K
Sbjct: 121 AEKAINTLNGLRLQTKTIKVSYA-RPSSASIRDANLY-------VSGLPK----TMTQKE 168
Query: 317 LDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG-KMI 375
L E+L + ITS ++ G S+G GF F EA A+ +NG K
Sbjct: 169 L------EQLFSQYGRI--ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPP 220
Query: 376 GR-KPLYVAVAQRKEERKAR-LQAQFAQI---RAPGGMSPLAS-----GIPGYHHGAPRL 425
G +P+ V A ++ + + +Q Q R PG ++ A + +G R
Sbjct: 221 GATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKRF 280
Query: 426 GPQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGPNYIMPYHLQRQVHP-GQRTGVR- 483
P + G+ P G G+ V+ L P I L + P G T V+
Sbjct: 281 SPMTIDGMTSLAGINIPGHPGTGWCIFVY-NLAPDADESI----LWQMFGPFGAVTNVKV 335
Query: 484 -RSGNTHQMQQPQFMRNSN 501
R NT++ + F+ +N
Sbjct: 336 IRDFNTNKCKGFGFVTMTN 354
Score = 117 (46.2 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 28/82 (34%), Positives = 39/82 (47%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSN-GQSKGYGFVQFENEEAAQNAIKML 176
+F+ NL D L F FG V + KV D N + KG+GFV N + A AI L
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 177 NGMLINDKQVYVGLFVRRQERA 198
NG + D+ + V + +A
Sbjct: 366 NGYRLGDRVLQVSFKTNKTHKA 387
Score = 116 (45.9 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NLA + L ++FG FG +T+ V++D + K + FGFV + D AA A+ L
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 268 NGTTNNDKVWYV 279
NG D+V V
Sbjct: 366 NGYRLGDRVLQV 377
Score = 97 (39.2 bits), Expect = 2.7e-23, Sum P(2) = 2.7e-23
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L ++F FG +T+ KV+ D + KG GF + +EA A+ +
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G + L V+ K +
Sbjct: 366 NGYRLGDRVLQVSFKTNKTHK 386
Score = 94 (38.1 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ +LYV L + + + +L LFSQ ++++ R+ DQ S G ++ + +A A
Sbjct: 152 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 211
Query: 87 EALNFMPING--KPIRIMYSHRDPS 109
+ LN G +PI + +++ +PS
Sbjct: 212 KGLNGQKPPGATEPITVKFAN-NPS 235
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 237 (88.5 bits), Expect = 2.8e-25, Sum P(2) = 2.8e-25
Identities = 49/151 (32%), Positives = 85/151 (56%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+L V L QN+ + +L LF + ++ S ++ RD+ SLGY +VNY +P+DA A
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 128
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN + + K I++ Y+ PS N+++ L ++ K L F+ +G +++ ++
Sbjct: 129 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 186
Query: 149 IDS-NGQSKGYGFVQFENEEAAQNAIKMLNG 178
+D G S+G GF++F+ A+ AIK LNG
Sbjct: 187 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Score = 209 (78.6 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 51/155 (32%), Positives = 84/155 (54%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+ + L ++ + L F + G + SCK+ D GQS GYGFV + + + A+ AI
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 128
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI-T 234
LNG+ + K + V + R + S + N+YV+ L +T+T ++L+++F +G I T
Sbjct: 129 LNGLRLQTKTIKVS-YAR-----PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 182
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
S I++ G SR GF+ F A A++ LNG
Sbjct: 183 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Score = 157 (60.3 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 88/319 (27%), Positives = 134/319 (42%)
Query: 201 NVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDA 259
N TN+ VN L + +T E+LK +FG G I S +++D G+S +GFVN+ P
Sbjct: 62 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 121
Query: 260 AAAAVEKLNGT---TNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKN 316
A A+ LNG T KV Y R + R+A+L +S K + K
Sbjct: 122 AEKAINTLNGLRLQTKTIKVSYA-RPSSASIRDANLY-------VSGLPK----TMTQKE 169
Query: 317 LDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG-KMI 375
L E+L + ITS ++ G S+G GF F EA A+ +NG K
Sbjct: 170 L------EQLFSQYGRI--ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPP 221
Query: 376 GR-KPLYVAVAQRKEERKAR-LQAQFAQI---RAPGGMSPLAS-----GIPGYHHGAPRL 425
G +P+ V A ++ + + +Q Q R PG ++ A + +G R
Sbjct: 222 GATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKRF 281
Query: 426 GPQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGPNYIMPYHLQRQVHP-GQRTGVR- 483
P + G+ P G G+ V+ L P I L + P G T V+
Sbjct: 282 SPMTIDGMTSLAGINIPGHPGTGWCIFVY-NLAPDADESI----LWQMFGPFGAVTNVKV 336
Query: 484 -RSGNTHQMQQPQFMRNSN 501
R NT++ + F+ +N
Sbjct: 337 IRDFNTNKCKGFGFVTMTN 355
Score = 117 (46.2 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 28/82 (34%), Positives = 39/82 (47%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSN-GQSKGYGFVQFENEEAAQNAIKML 176
+F+ NL D L F FG V + KV D N + KG+GFV N + A AI L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 177 NGMLINDKQVYVGLFVRRQERA 198
NG + D+ + V + +A
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHKA 388
Score = 116 (45.9 bits), Expect = 2.8e-25, Sum P(2) = 2.8e-25
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NLA + L ++FG FG +T+ V++D + K + FGFV + D AA A+ L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 268 NGTTNNDKVWYV 279
NG D+V V
Sbjct: 367 NGYRLGDRVLQV 378
Score = 97 (39.2 bits), Expect = 2.7e-23, Sum P(2) = 2.7e-23
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L ++F FG +T+ KV+ D + KG GF + +EA A+ +
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G + L V+ K +
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
Score = 94 (38.1 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ +LYV L + + + +L LFSQ ++++ R+ DQ S G ++ + +A A
Sbjct: 153 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 212
Query: 87 EALNFMPING--KPIRIMYSHRDPS 109
+ LN G +PI + +++ +PS
Sbjct: 213 KGLNGQKPPGATEPITVKFAN-NPS 236
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 232 (86.7 bits), Expect = 4.5e-25, Sum P(2) = 4.5e-25
Identities = 47/145 (32%), Positives = 82/145 (56%)
Query: 35 LEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPI 94
L QN+ + +L LF + ++ S ++ RD+ SLGY +VNY +P+DA A LN + +
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105
Query: 95 NGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NG 153
K I++ Y+ PS N+++ L ++ K L F+ +G +++ ++ +D G
Sbjct: 106 QTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 163
Query: 154 QSKGYGFVQFENEEAAQNAIKMLNG 178
S+G GF++F+ A+ AIK LNG
Sbjct: 164 ISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 203 (76.5 bits), Expect = 2.1e-19, Sum P(2) = 2.1e-19
Identities = 51/155 (32%), Positives = 83/155 (53%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+ L ++ + L F + G + SCK+ D GQS GYGFV + + + A+ AI
Sbjct: 40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI-T 234
LNG+ + K + V + R + S + N+YV+ L +T+T ++L+++F +G I T
Sbjct: 100 LNGLRLQTKTIKVS-YAR-----PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
S I++ G SR GF+ F A A++ LNG
Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 150 (57.9 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 87/319 (27%), Positives = 133/319 (41%)
Query: 201 NVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDA 259
N TN+ N L + +T E+LK +FG G I S +++D G+S +GFVN+ P
Sbjct: 33 NTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 260 AAAAVEKLNGT---TNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKN 316
A A+ LNG T KV Y R + R+A+L +S K + K
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYA-RPSSASIRDANLY-------VSGLPK----TMTQKE 140
Query: 317 LDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG-KMI 375
L E+L + ITS ++ G S+G GF F EA A+ +NG K
Sbjct: 141 L------EQLFSQYGRI--ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPP 192
Query: 376 GR-KPLYVAVAQRKEERKAR-LQAQFAQI---RAPGGMSPLAS-----GIPGYHHGAPRL 425
G +P+ V A ++ + + +Q Q R PG ++ A + +G R
Sbjct: 193 GATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKRF 252
Query: 426 GPQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGPNYIMPYHLQRQVHP-GQRTGVR- 483
P + G+ P G G+ V+ L P I L + P G T V+
Sbjct: 253 SPMTIDGMTSLAGINIPGHPGTGWCIFVY-NLAPDADESI----LWQMFGPFGAVTNVKV 307
Query: 484 -RSGNTHQMQQPQFMRNSN 501
R NT++ + F+ +N
Sbjct: 308 IRDFNTNKCKGFGFVTMTN 326
Score = 117 (46.2 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 28/82 (34%), Positives = 39/82 (47%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSN-GQSKGYGFVQFENEEAAQNAIKML 176
+F+ NL D L F FG V + KV D N + KG+GFV N + A AI L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 177 NGMLINDKQVYVGLFVRRQERA 198
NG + D+ + V + +A
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHKA 359
Score = 116 (45.9 bits), Expect = 4.5e-25, Sum P(2) = 4.5e-25
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NLA + L ++FG FG +T+ V++D + K + FGFV + D AA A+ L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 268 NGTTNNDKVWYV 279
NG D+V V
Sbjct: 338 NGYRLGDRVLQV 349
Score = 97 (39.2 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L ++F FG +T+ KV+ D + KG GF + +EA A+ +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G + L V+ K +
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
Score = 94 (38.1 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ +LYV L + + + +L LFSQ ++++ R+ DQ S G ++ + +A A
Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183
Query: 87 EALNFMPING--KPIRIMYSHRDPS 109
+ LN G +PI + +++ +PS
Sbjct: 184 KGLNGQKPPGATEPITVKFAN-NPS 207
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 232 (86.7 bits), Expect = 4.5e-25, Sum P(2) = 4.5e-25
Identities = 47/145 (32%), Positives = 82/145 (56%)
Query: 35 LEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPI 94
L QN+ + +L LF + ++ S ++ RD+ SLGY +VNY +P+DA A LN + +
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105
Query: 95 NGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NG 153
K I++ Y+ PS N+++ L ++ K L F+ +G +++ ++ +D G
Sbjct: 106 QTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 163
Query: 154 QSKGYGFVQFENEEAAQNAIKMLNG 178
S+G GF++F+ A+ AIK LNG
Sbjct: 164 ISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 203 (76.5 bits), Expect = 2.1e-19, Sum P(2) = 2.1e-19
Identities = 51/155 (32%), Positives = 83/155 (53%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+ L ++ + L F + G + SCK+ D GQS GYGFV + + + A+ AI
Sbjct: 40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI-T 234
LNG+ + K + V + R + S + N+YV+ L +T+T ++L+++F +G I T
Sbjct: 100 LNGLRLQTKTIKVS-YAR-----PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
S I++ G SR GF+ F A A++ LNG
Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 150 (57.9 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 87/319 (27%), Positives = 133/319 (41%)
Query: 201 NVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDA 259
N TN+ N L + +T E+LK +FG G I S +++D G+S +GFVN+ P
Sbjct: 33 NTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 260 AAAAVEKLNGT---TNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKN 316
A A+ LNG T KV Y R + R+A+L +S K + K
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYA-RPSSASIRDANLY-------VSGLPK----TMTQKE 140
Query: 317 LDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG-KMI 375
L E+L + ITS ++ G S+G GF F EA A+ +NG K
Sbjct: 141 L------EQLFSQYGRI--ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPP 192
Query: 376 GR-KPLYVAVAQRKEERKAR-LQAQFAQI---RAPGGMSPLAS-----GIPGYHHGAPRL 425
G +P+ V A ++ + + +Q Q R PG ++ A + +G R
Sbjct: 193 GATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKRF 252
Query: 426 GPQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGPNYIMPYHLQRQVHP-GQRTGVR- 483
P + G+ P G G+ V+ L P I L + P G T V+
Sbjct: 253 SPMTIDGMTSLAGINIPGHPGTGWCIFVY-NLAPDADESI----LWQMFGPFGAVTNVKV 307
Query: 484 -RSGNTHQMQQPQFMRNSN 501
R NT++ + F+ +N
Sbjct: 308 IRDFNTNKCKGFGFVTMTN 326
Score = 117 (46.2 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 28/82 (34%), Positives = 39/82 (47%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSN-GQSKGYGFVQFENEEAAQNAIKML 176
+F+ NL D L F FG V + KV D N + KG+GFV N + A AI L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 177 NGMLINDKQVYVGLFVRRQERA 198
NG + D+ + V + +A
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHKA 359
Score = 116 (45.9 bits), Expect = 4.5e-25, Sum P(2) = 4.5e-25
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NLA + L ++FG FG +T+ V++D + K + FGFV + D AA A+ L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 268 NGTTNNDKVWYV 279
NG D+V V
Sbjct: 338 NGYRLGDRVLQV 349
Score = 97 (39.2 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L ++F FG +T+ KV+ D + KG GF + +EA A+ +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G + L V+ K +
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
Score = 94 (38.1 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ +LYV L + + + +L LFSQ ++++ R+ DQ S G ++ + +A A
Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183
Query: 87 EALNFMPING--KPIRIMYSHRDPS 109
+ LN G +PI + +++ +PS
Sbjct: 184 KGLNGQKPPGATEPITVKFAN-NPS 207
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 235 (87.8 bits), Expect = 5.1e-25, Sum P(2) = 5.1e-25
Identities = 48/151 (31%), Positives = 85/151 (56%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+L V L Q++ + +L LF + ++ S ++ RD+ SLGY +VNY +P+DA A
Sbjct: 68 NLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINT 127
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN + + K I++ Y+ PS N+++ L ++ K L F+ +G +++ ++
Sbjct: 128 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 185
Query: 149 IDS-NGQSKGYGFVQFENEEAAQNAIKMLNG 178
+D G S+G GF++F+ A+ AIK LNG
Sbjct: 186 VDQVTGMSRGVGFIRFDKRIEAEEAIKGLNG 216
Score = 215 (80.7 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 52/155 (33%), Positives = 84/155 (54%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+ + L S+ + L F + G + SCK+ D GQS GYGFV + + + A+ AI
Sbjct: 68 NLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINT 127
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI-T 234
LNG+ + K + V + R + S + N+YV+ L +T+T ++L+++F +G I T
Sbjct: 128 LNGLRLQTKTIKVS-YAR-----PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 181
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
S I++ G SR GF+ F A A++ LNG
Sbjct: 182 SRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNG 216
Score = 154 (59.3 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 64/217 (29%), Positives = 97/217 (44%)
Query: 201 NVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDA 259
N TN+ VN L +++T E+LK +FG G I S +++D G+S +GFVN+ P
Sbjct: 61 NTEDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKD 120
Query: 260 AAAAVEKLNGT---TNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKN 316
A A+ LNG T KV Y R + R+A+L +S K + K
Sbjct: 121 AEKAINTLNGLRLQTKTIKVSYA-RPSSASIRDANLY-------VSGLPK----TMTQKE 168
Query: 317 LDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKM-- 374
L E+L + ITS ++ G S+G GF F EA A+ +NG+
Sbjct: 169 L------EQLFSQYGRI--ITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQKPP 220
Query: 375 IGRKPLYVAVAQRKEERKARLQAQFAQI-RAPGGMSP 410
+P+ V A ++ QA +Q+ +P P
Sbjct: 221 AATEPITVKFANNPSQKTN--QAILSQLYHSPNRRYP 255
Score = 117 (46.2 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 28/82 (34%), Positives = 39/82 (47%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSN-GQSKGYGFVQFENEEAAQNAIKML 176
+F+ NL D L F FG V + KV D N + KG+GFV N + A AI L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 177 NGMLINDKQVYVGLFVRRQERA 198
NG + D+ + V + +A
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHKA 388
Score = 116 (45.9 bits), Expect = 5.1e-25, Sum P(2) = 5.1e-25
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NLA + L ++FG FG +T+ V++D + K + FGFV + D AA A+ L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 268 NGTTNNDKVWYV 279
NG D+V V
Sbjct: 367 NGYRLGDRVLQV 378
Score = 97 (39.2 bits), Expect = 4.9e-23, Sum P(2) = 4.9e-23
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L ++F FG +T+ KV+ D + KG GF + +EA A+ +
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G + L V+ K +
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
Score = 97 (39.2 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ +LYV L + + + +L LFSQ ++++ R+ DQ S G ++ + +A A
Sbjct: 152 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAI 211
Query: 87 EALNFM--PINGKPIRIMYSHRDPS 109
+ LN P +PI + +++ +PS
Sbjct: 212 KGLNGQKPPAATEPITVKFAN-NPS 235
>POMBASE|SPAC31G5.01 [details] [associations]
symbol:sap49 "U2 snRNP-associated RNA-binding protein
Sap49" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005686 "U2 snRNP" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC31G5.01 GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005686 GO:GO:0045292
eggNOG:NOG282907 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:NP_594001.2 ProteinModelPortal:O14102 SMR:O14102
IntAct:O14102 STRING:O14102 EnsemblFungi:SPAC31G5.01.1
GeneID:2542426 KEGG:spo:SPAC31G5.01 OMA:QVARDEN NextBio:20803483
Uniprot:O14102
Length = 335
Score = 291 (107.5 bits), Expect = 6.0e-25, P = 6.0e-25
Identities = 57/176 (32%), Positives = 106/176 (60%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ ++Y+G+L++ V +S L++L Q VV++ + RD+ + S G+ + + + QD A
Sbjct: 10 DATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYAC 69
Query: 87 EALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSC- 145
+ LN + + GKPIR+ + +D + N+F+ NLD +D + L DTF+A G ++
Sbjct: 70 QILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAP 129
Query: 146 KVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQN 201
+VA D NG+SKGYGFV +++ E A AI+ +N + +K + V +R+ + +++
Sbjct: 130 QVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGERH 185
Score = 163 (62.4 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 48/180 (26%), Positives = 88/180 (48%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQS-KGYGFVQFENEEAAQNAIKML 176
+++ NLD + + L + G V++ + D S G+GF +F +E+ + A ++L
Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72
Query: 177 NGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSA 236
N + + K + V Q+R + N++V NL V + L F G + A
Sbjct: 73 NQVKLFGKPIRVNR--ASQDRGVNTLIG--ANLFVGNLDPLVDERVLYDTFSALGQLVKA 128
Query: 237 I-VMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDK---VWYVGRAQKRAEREADL 292
V +D +G+S+ +GFV++ S + A AA+E +N +K V Y + + + ER D+
Sbjct: 129 PQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGERHGDI 188
Score = 157 (60.3 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 55/188 (29%), Positives = 85/188 (45%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRC-FGFVNFQSPDAAAAAVEKL 267
+Y+ NL E VTD L ++ G + + + +D S FGF F A + L
Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72
Query: 268 NGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLK 327
N K V RA Q+R L GANL++ NLD +++ L
Sbjct: 73 NQVKLFGKPIRVNRAS--------------QDR--GVNTLIGANLFVGNLDPLVDERVLY 116
Query: 328 ELFSEFGTITSC-KVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386
+ FS G + +V D++G SKG GF ++ E A A+ MN + + KP+ V+ A
Sbjct: 117 DTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAF 176
Query: 387 RKEERKAR 394
++E + R
Sbjct: 177 KREGKGER 184
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 234 (87.4 bits), Expect = 6.5e-25, Sum P(2) = 6.5e-25
Identities = 48/151 (31%), Positives = 84/151 (55%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+L V L QN+ + + LF + ++ S ++ RD+ SLGY +VNY +P+DA A
Sbjct: 45 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 104
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN + + K I++ Y+ PS N+++ L ++ K L F+ +G +++ ++
Sbjct: 105 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 162
Query: 149 IDS-NGQSKGYGFVQFENEEAAQNAIKMLNG 178
+D G S+G GF++F+ A+ AIK LNG
Sbjct: 163 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 193
Score = 206 (77.6 bits), Expect = 9.3e-20, Sum P(2) = 9.3e-20
Identities = 50/155 (32%), Positives = 83/155 (53%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+ + L ++ + F + G + SCK+ D GQS GYGFV + + + A+ AI
Sbjct: 45 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 104
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI-T 234
LNG+ + K + V + R + S + N+YV+ L +T+T ++L+++F +G I T
Sbjct: 105 LNGLRLQTKTIKVS-YAR-----PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 158
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
S I++ G SR GF+ F A A++ LNG
Sbjct: 159 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 193
Score = 149 (57.5 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 63/211 (29%), Positives = 97/211 (45%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVE 265
TN+ VN L + +T E+ + +FG G I S +++D G+S +GFVN+ P A A+
Sbjct: 44 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 103
Query: 266 KLNGT---TNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
LNG T KV Y R + R+A+L +S K + K L
Sbjct: 104 TLNGLRLQTKTIKVSYA-RPSSASIRDANLY-------VSGLPK----TMTQKEL----- 146
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG-KMIGR-KPL 380
E+L + ITS ++ G S+G GF F EA A+ +NG K G +P+
Sbjct: 147 -EQLFSQYGRI--ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 203
Query: 381 YVAVAQRKEERKARLQAQFAQI-RAPGGMSP 410
V A ++ + QA +Q+ ++P P
Sbjct: 204 TVKFANNPSQKSS--QALLSQLYQSPNRRYP 232
Score = 142 (55.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 41/122 (33%), Positives = 68/122 (55%)
Query: 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATR 365
++ ANLY+ L ++ ++L++LFS++G I + +++VDQ G S+G GF F EA
Sbjct: 127 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 186
Query: 366 ALNEMNG-KMIGR-KPLYVAVAQRKEERKARLQAQFAQI-RAPGGMSPLASGIPGYHHGA 422
A+ +NG K G +P+ V A ++ + QA +Q+ ++P P G P HH A
Sbjct: 187 AIKGLNGQKPSGATEPITVKFANNPSQKSS--QALLSQLYQSPNRRYP---G-P-LHHQA 239
Query: 423 PR 424
R
Sbjct: 240 QR 241
Score = 126 (49.4 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 40/156 (25%), Positives = 65/156 (41%)
Query: 49 SQVAQVVSVRVCRDQSKRSSLG-----YAYVNYSNPQDAANAKEALNFMPINGKPIRIMY 103
S + ++V+ + S++SS Y N P + + F PI + +
Sbjct: 197 SGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRFSPITIDGMTSLV 256
Query: 104 SHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSN-GQSKGYGFVQ 162
P +G+ +F+ NL D L F FG V + KV D N + KG+GFV
Sbjct: 257 GMNIPGHTGTGWC-IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVT 315
Query: 163 FENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERA 198
N + A AI LNG + D+ + V + ++
Sbjct: 316 MTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHKS 351
Score = 110 (43.8 bits), Expect = 6.5e-25, Sum P(2) = 6.5e-25
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NL+ + L ++FG FG + + V++D + K + FGFV + D AA A+ L
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 268 NGTTNNDKVWYVGRAQKRAER 288
NG D+V V +A +
Sbjct: 330 NGYRLGDRVLQVSFKTNKAHK 350
Score = 100 (40.3 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 24/89 (26%), Positives = 48/89 (53%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ +LYV L + + + +L LFSQ ++++ R+ DQ S G ++ + +A A
Sbjct: 129 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 188
Query: 87 EALNFMPING--KPIRIMYSHRDPSIRKS 113
+ LN +G +PI + +++ +PS + S
Sbjct: 189 KGLNGQKPSGATEPITVKFAN-NPSQKSS 216
Score = 96 (38.9 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L +LF FG + + KV+ D + KG GF + +EA A+ +
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G + L V+ K +
Sbjct: 330 NGYRLGDRVLQVSFKTNKAHK 350
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 234 (87.4 bits), Expect = 6.9e-25, Sum P(2) = 6.9e-25
Identities = 49/152 (32%), Positives = 87/152 (57%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQ-SKRSSLGYAYVNYSNPQDAANAKE 87
+L V L QN+ + +L LF + ++ S ++ RD+ ++ SLGY +VNY +P+DA A
Sbjct: 67 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAIN 126
Query: 88 ALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKV 147
LN + + K I++ Y+ PS N+++ L ++ K L F+ +G +++ ++
Sbjct: 127 TLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 184
Query: 148 AIDS-NGQSKGYGFVQFENEEAAQNAIKMLNG 178
+D G S+G GF++F+ A+ AIK LNG
Sbjct: 185 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 216
Score = 209 (78.6 bits), Expect = 9.5e-20, Sum P(2) = 9.5e-20
Identities = 51/156 (32%), Positives = 85/156 (54%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAID--SNGQSKGYGFVQFENEEAAQNAIK 174
N+ + L ++ + L F + G + SCK+ D + GQS GYGFV + + + A+ AI
Sbjct: 67 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAIN 126
Query: 175 MLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI- 233
LNG+ + K + V + R + S + N+YV+ L +T+T ++L+++F +G I
Sbjct: 127 TLNGLRLQTKTIKVS-YAR-----PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 180
Query: 234 TSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
TS I++ G SR GF+ F A A++ LNG
Sbjct: 181 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 216
Score = 177 (67.4 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 58/194 (29%), Positives = 92/194 (47%)
Query: 201 NVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAA 260
N TN+ VN L + +T E+LK +FG G I S +++D + + G+ D
Sbjct: 60 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPK 119
Query: 261 AAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDS 320
A EK T N R Q + K R S ++ ANLY+ L +
Sbjct: 120 DA--EKAINTLNGL------RLQTKT-------IKVSYARPSS-ASIRDANLYVSGLPKT 163
Query: 321 INDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNG-KMIGR- 377
+ ++L++LFS++G I + +++VDQ G S+G GF F EA A+ +NG K G
Sbjct: 164 MTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGAT 223
Query: 378 KPLYVAVAQRKEER 391
+P+ V A ++
Sbjct: 224 EPITVKFANNPSQK 237
Score = 116 (45.9 bits), Expect = 6.9e-25, Sum P(2) = 6.9e-25
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NLA + L ++FG FG +T+ V++D + K + FGFV + D AA A+ L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 268 NGTTNNDKVWYV 279
NG D+V V
Sbjct: 368 NGYRLGDRVLQV 379
Score = 116 (45.9 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 28/82 (34%), Positives = 39/82 (47%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSN-GQSKGYGFVQFENEEAAQNAIKML 176
+F+ NL D L F FG V + KV D N + KG+GFV N + A AI L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 177 NGMLINDKQVYVGLFVRRQERA 198
NG + D+ + V + +A
Sbjct: 368 NGYRLGDRVLQVSFKTSKTHKA 389
Score = 96 (38.9 bits), Expect = 8.5e-23, Sum P(2) = 8.5e-23
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L ++F FG +T+ KV+ D + KG GF + +EA A+ +
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G + L V+ K +
Sbjct: 368 NGYRLGDRVLQVSFKTSKTHK 388
Score = 94 (38.1 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ +LYV L + + + +L LFSQ ++++ R+ DQ S G ++ + +A A
Sbjct: 152 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 211
Query: 87 EALNFMPING--KPIRIMYSHRDPS 109
+ LN G +PI + +++ +PS
Sbjct: 212 KGLNGQKPPGATEPITVKFAN-NPS 235
Score = 56 (24.8 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 116 GNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNG--QSKGYGFVQFENEEAAQNAI 173
G V I ++T + N C+ A ++C ++SN SK V + + Q +
Sbjct: 24 GQV-IAAMETQLSNGPTCNNTANCPNTINCSSPVESNNTEDSKTNLIVNYLPQNMTQEEL 82
Query: 174 KMLNGML 180
K L G +
Sbjct: 83 KSLFGSI 89
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 236 (88.1 bits), Expect = 7.9e-25, Sum P(2) = 7.9e-25
Identities = 48/151 (31%), Positives = 84/151 (55%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+L V L QN+ + + LF + + S ++ RD+ SLGY +VNYS+P DA A
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN + + K I++ Y+ PS N+++ L ++ K + F+ +G +++ ++
Sbjct: 100 LNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRIL 157
Query: 149 ID-SNGQSKGYGFVQFENEEAAQNAIKMLNG 178
+D + G S+G GF++F+ A+ AIK LNG
Sbjct: 158 LDQATGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 202 (76.2 bits), Expect = 4.9e-20, Sum P(2) = 4.9e-20
Identities = 48/155 (30%), Positives = 81/155 (52%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+ + L ++ F + G + SCK+ D GQS GYGFV + + A AI
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI-T 234
LNG+ + K + V + R + S + N+YV+ L +T++ ++++++F +G I T
Sbjct: 100 LNGLKLQTKTIKVS-YAR-----PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
S I++ + G SR GF+ F A A++ LNG
Sbjct: 154 SRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 152 (58.6 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 56/191 (29%), Positives = 88/191 (46%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVE 265
TN+ VN L + +T ++ K +FG G I S +++D G+S +GFVN+ P+ A A+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 266 KLNGT---TNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
LNG T KV Y R + R+A+L + +S+ E
Sbjct: 99 TLNGLKLQTKTIKVSYA-RPSSASIRDANLYVSGLPKTMSQKEM---------------- 141
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG-KMIGR-KPL 380
E+L + ITS ++ G S+G GF F EA A+ +NG K +G +P+
Sbjct: 142 -EQLFSQYGRI--ITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 198
Query: 381 YVAVAQRKEER 391
V A ++
Sbjct: 199 TVKFANNPSQK 209
Score = 118 (46.6 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 27/82 (32%), Positives = 40/82 (48%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKML 176
+F+ NL D L F FG V + KV D + + KG+GFV N + A AI L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 177 NGMLINDKQVYVGLFVRRQERA 198
NG + ++ + V +Q +A
Sbjct: 346 NGYRLGERVLQVSFKTSKQHKA 367
Score = 110 (43.8 bits), Expect = 7.9e-25, Sum P(2) = 7.9e-25
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NL+ + L ++FG FG +T+ V++D + K + FGFV + D AA A+ L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 268 NGTTNNDKVWYV 279
NG ++V V
Sbjct: 346 NGYRLGERVLQV 357
Score = 105 (42.0 bits), Expect = 2.6e-24, Sum P(2) = 2.6e-24
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L +LF FG +T+ KV+ D KG GF + +EA A+ +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G + L V+ K+ +
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
Score = 103 (41.3 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 24/90 (26%), Positives = 52/90 (57%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ +LYV L + +++ ++ LFSQ ++++ R+ DQ+ S G ++ + +A A
Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAI 183
Query: 87 EALNFM-PING-KPIRIMYSHRDPSIRKSG 114
+ LN P+ +PI + +++ +PS +K+G
Sbjct: 184 KGLNGQKPLGAAEPITVKFAN-NPS-QKTG 211
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 236 (88.1 bits), Expect = 7.9e-25, Sum P(2) = 7.9e-25
Identities = 48/151 (31%), Positives = 84/151 (55%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+L V L QN+ + + LF + + S ++ RD+ SLGY +VNYS+P DA A
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN + + K I++ Y+ PS N+++ L ++ K + F+ +G +++ ++
Sbjct: 100 LNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRIL 157
Query: 149 ID-SNGQSKGYGFVQFENEEAAQNAIKMLNG 178
+D + G S+G GF++F+ A+ AIK LNG
Sbjct: 158 LDQATGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 202 (76.2 bits), Expect = 4.9e-20, Sum P(2) = 4.9e-20
Identities = 48/155 (30%), Positives = 81/155 (52%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+ + L ++ F + G + SCK+ D GQS GYGFV + + A AI
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI-T 234
LNG+ + K + V + R + S + N+YV+ L +T++ ++++++F +G I T
Sbjct: 100 LNGLKLQTKTIKVS-YAR-----PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
S I++ + G SR GF+ F A A++ LNG
Sbjct: 154 SRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 152 (58.6 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 56/191 (29%), Positives = 88/191 (46%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVE 265
TN+ VN L + +T ++ K +FG G I S +++D G+S +GFVN+ P+ A A+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 266 KLNGT---TNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
LNG T KV Y R + R+A+L + +S+ E
Sbjct: 99 TLNGLKLQTKTIKVSYA-RPSSASIRDANLYVSGLPKTMSQKEM---------------- 141
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG-KMIGR-KPL 380
E+L + ITS ++ G S+G GF F EA A+ +NG K +G +P+
Sbjct: 142 -EQLFSQYGRI--ITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 198
Query: 381 YVAVAQRKEER 391
V A ++
Sbjct: 199 TVKFANNPSQK 209
Score = 118 (46.6 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 27/82 (32%), Positives = 40/82 (48%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKML 176
+F+ NL D L F FG V + KV D + + KG+GFV N + A AI L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 177 NGMLINDKQVYVGLFVRRQERA 198
NG + ++ + V +Q +A
Sbjct: 346 NGYRLGERVLQVSFKTSKQHKA 367
Score = 110 (43.8 bits), Expect = 7.9e-25, Sum P(2) = 7.9e-25
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NL+ + L ++FG FG +T+ V++D + K + FGFV + D AA A+ L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 268 NGTTNNDKVWYV 279
NG ++V V
Sbjct: 346 NGYRLGERVLQV 357
Score = 105 (42.0 bits), Expect = 2.6e-24, Sum P(2) = 2.6e-24
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L +LF FG +T+ KV+ D KG GF + +EA A+ +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G + L V+ K+ +
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
Score = 103 (41.3 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 24/90 (26%), Positives = 52/90 (57%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ +LYV L + +++ ++ LFSQ ++++ R+ DQ+ S G ++ + +A A
Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAI 183
Query: 87 EALNFM-PING-KPIRIMYSHRDPSIRKSG 114
+ LN P+ +PI + +++ +PS +K+G
Sbjct: 184 KGLNGQKPLGAAEPITVKFAN-NPS-QKTG 211
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 236 (88.1 bits), Expect = 7.9e-25, Sum P(2) = 7.9e-25
Identities = 48/151 (31%), Positives = 83/151 (54%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+L V L QN+ + + LF + + S ++ RD+ SLGY +VNYS+P DA A
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN + + K I++ Y+ PS N+++ L ++ K + F+ +G +++ ++
Sbjct: 100 LNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRIL 157
Query: 149 IDS-NGQSKGYGFVQFENEEAAQNAIKMLNG 178
+D G S+G GF++F+ A+ AIK LNG
Sbjct: 158 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 198 (74.8 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 48/155 (30%), Positives = 80/155 (51%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+ + L ++ F + G + SCK+ D GQS GYGFV + + A AI
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI-T 234
LNG+ + K + V + R + S + N+YV+ L +T++ ++++++F +G I T
Sbjct: 100 LNGLKLQTKTIKVS-YAR-----PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
S I++ G SR GF+ F A A++ LNG
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 150 (57.9 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 56/191 (29%), Positives = 88/191 (46%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVE 265
TN+ VN L + +T ++ K +FG G I S +++D G+S +GFVN+ P+ A A+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 266 KLNGT---TNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
LNG T KV Y R + R+A+L + +S+ E
Sbjct: 99 TLNGLKLQTKTIKVSYA-RPSSASIRDANLYVSGLPKTMSQKEM---------------- 141
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG-KMIGR-KPL 380
E+L + ITS ++ G S+G GF F EA A+ +NG K +G +P+
Sbjct: 142 -EQLFSQYGRI--ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 198
Query: 381 YVAVAQRKEER 391
V A ++
Sbjct: 199 TVKFANNPSQK 209
Score = 120 (47.3 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 30/91 (32%), Positives = 44/91 (48%)
Query: 110 IRKSGYG-NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEE 167
+R G G +F+ NL D L F FG V + KV D + + KG+GFV N +
Sbjct: 277 VRGCGGGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYD 336
Query: 168 AAQNAIKMLNGMLINDKQVYVGLFVRRQERA 198
A AI LNG + ++ + V +Q +A
Sbjct: 337 EAAMAIASLNGYRLGERVLQVSFKTSKQHKA 367
Score = 110 (43.8 bits), Expect = 7.9e-25, Sum P(2) = 7.9e-25
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NL+ + L ++FG FG +T+ V++D + K + FGFV + D AA A+ L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 268 NGTTNNDKVWYV 279
NG ++V V
Sbjct: 346 NGYRLGERVLQV 357
Score = 105 (42.0 bits), Expect = 2.6e-24, Sum P(2) = 2.6e-24
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L +LF FG +T+ KV+ D KG GF + +EA A+ +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G + L V+ K+ +
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
Score = 99 (39.9 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 24/90 (26%), Positives = 51/90 (56%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ +LYV L + +++ ++ LFSQ ++++ R+ DQ S G ++ + +A A
Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 183
Query: 87 EALNFM-PING-KPIRIMYSHRDPSIRKSG 114
+ LN P+ +PI + +++ +PS +K+G
Sbjct: 184 KGLNGQKPLGAAEPITVKFAN-NPS-QKTG 211
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 236 (88.1 bits), Expect = 7.9e-25, Sum P(2) = 7.9e-25
Identities = 48/151 (31%), Positives = 83/151 (54%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+L V L QN+ + + LF + + S ++ RD+ SLGY +VNYS+P DA A
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN + + K I++ Y+ PS N+++ L ++ K + F+ +G +++ ++
Sbjct: 100 LNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRIL 157
Query: 149 IDS-NGQSKGYGFVQFENEEAAQNAIKMLNG 178
+D G S+G GF++F+ A+ AIK LNG
Sbjct: 158 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 198 (74.8 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 48/155 (30%), Positives = 80/155 (51%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+ + L ++ F + G + SCK+ D GQS GYGFV + + A AI
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI-T 234
LNG+ + K + V + R + S + N+YV+ L +T++ ++++++F +G I T
Sbjct: 100 LNGLKLQTKTIKVS-YAR-----PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
S I++ G SR GF+ F A A++ LNG
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 150 (57.9 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 56/191 (29%), Positives = 88/191 (46%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVE 265
TN+ VN L + +T ++ K +FG G I S +++D G+S +GFVN+ P+ A A+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 266 KLNGT---TNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
LNG T KV Y R + R+A+L + +S+ E
Sbjct: 99 TLNGLKLQTKTIKVSYA-RPSSASIRDANLYVSGLPKTMSQKEM---------------- 141
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG-KMIGR-KPL 380
E+L + ITS ++ G S+G GF F EA A+ +NG K +G +P+
Sbjct: 142 -EQLFSQYGRI--ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 198
Query: 381 YVAVAQRKEER 391
V A ++
Sbjct: 199 TVKFANNPSQK 209
Score = 118 (46.6 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 27/82 (32%), Positives = 40/82 (48%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKML 176
+F+ NL D L F FG V + KV D + + KG+GFV N + A AI L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 177 NGMLINDKQVYVGLFVRRQERA 198
NG + ++ + V +Q +A
Sbjct: 346 NGYRLGERVLQVSFKTSKQHKA 367
Score = 110 (43.8 bits), Expect = 7.9e-25, Sum P(2) = 7.9e-25
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NL+ + L ++FG FG +T+ V++D + K + FGFV + D AA A+ L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 268 NGTTNNDKVWYV 279
NG ++V V
Sbjct: 346 NGYRLGERVLQV 357
Score = 105 (42.0 bits), Expect = 2.6e-24, Sum P(2) = 2.6e-24
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L +LF FG +T+ KV+ D KG GF + +EA A+ +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G + L V+ K+ +
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
Score = 99 (39.9 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 24/90 (26%), Positives = 51/90 (56%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ +LYV L + +++ ++ LFSQ ++++ R+ DQ S G ++ + +A A
Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 183
Query: 87 EALNFM-PING-KPIRIMYSHRDPSIRKSG 114
+ LN P+ +PI + +++ +PS +K+G
Sbjct: 184 KGLNGQKPLGAAEPITVKFAN-NPS-QKTG 211
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 236 (88.1 bits), Expect = 7.9e-25, Sum P(2) = 7.9e-25
Identities = 48/151 (31%), Positives = 83/151 (54%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+L V L QN+ + + LF + + S ++ RD+ SLGY +VNYS+P DA A
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN + + K I++ Y+ PS N+++ L ++ K + F+ +G +++ ++
Sbjct: 100 LNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRIL 157
Query: 149 IDS-NGQSKGYGFVQFENEEAAQNAIKMLNG 178
+D G S+G GF++F+ A+ AIK LNG
Sbjct: 158 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 198 (74.8 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 48/155 (30%), Positives = 80/155 (51%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+ + L ++ F + G + SCK+ D GQS GYGFV + + A AI
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI-T 234
LNG+ + K + V + R + S + N+YV+ L +T++ ++++++F +G I T
Sbjct: 100 LNGLKLQTKTIKVS-YAR-----PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
S I++ G SR GF+ F A A++ LNG
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 150 (57.9 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 56/191 (29%), Positives = 88/191 (46%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVE 265
TN+ VN L + +T ++ K +FG G I S +++D G+S +GFVN+ P+ A A+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 266 KLNGT---TNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
LNG T KV Y R + R+A+L + +S+ E
Sbjct: 99 TLNGLKLQTKTIKVSYA-RPSSASIRDANLYVSGLPKTMSQKEM---------------- 141
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG-KMIGR-KPL 380
E+L + ITS ++ G S+G GF F EA A+ +NG K +G +P+
Sbjct: 142 -EQLFSQYGRI--ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 198
Query: 381 YVAVAQRKEER 391
V A ++
Sbjct: 199 TVKFANNPSQK 209
Score = 118 (46.6 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 27/82 (32%), Positives = 40/82 (48%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKML 176
+F+ NL D L F FG V + KV D + + KG+GFV N + A AI L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 177 NGMLINDKQVYVGLFVRRQERA 198
NG + ++ + V +Q +A
Sbjct: 346 NGYRLGERVLQVSFKTSKQHKA 367
Score = 110 (43.8 bits), Expect = 7.9e-25, Sum P(2) = 7.9e-25
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NL+ + L ++FG FG +T+ V++D + K + FGFV + D AA A+ L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 268 NGTTNNDKVWYV 279
NG ++V V
Sbjct: 346 NGYRLGERVLQV 357
Score = 105 (42.0 bits), Expect = 2.6e-24, Sum P(2) = 2.6e-24
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L +LF FG +T+ KV+ D KG GF + +EA A+ +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G + L V+ K+ +
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
Score = 99 (39.9 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 24/90 (26%), Positives = 51/90 (56%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ +LYV L + +++ ++ LFSQ ++++ R+ DQ S G ++ + +A A
Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 183
Query: 87 EALNFM-PING-KPIRIMYSHRDPSIRKSG 114
+ LN P+ +PI + +++ +PS +K+G
Sbjct: 184 KGLNGQKPLGAAEPITVKFAN-NPS-QKTG 211
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 236 (88.1 bits), Expect = 8.3e-25, Sum P(2) = 8.3e-25
Identities = 48/151 (31%), Positives = 83/151 (54%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+L V L QN+ + + LF + + S ++ RD+ SLGY +VNYS+P DA A
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN + + K I++ Y+ PS N+++ L ++ K + F+ +G +++ ++
Sbjct: 100 LNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRIL 157
Query: 149 IDS-NGQSKGYGFVQFENEEAAQNAIKMLNG 178
+D G S+G GF++F+ A+ AIK LNG
Sbjct: 158 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 198 (74.8 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 48/155 (30%), Positives = 80/155 (51%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+ + L ++ F + G + SCK+ D GQS GYGFV + + A AI
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI-T 234
LNG+ + K + V + R + S + N+YV+ L +T++ ++++++F +G I T
Sbjct: 100 LNGLKLQTKTIKVS-YAR-----PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
S I++ G SR GF+ F A A++ LNG
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 155 (59.6 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 62/212 (29%), Positives = 95/212 (44%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVE 265
TN+ VN L + +T ++ K +FG G I S +++D G+S +GFVN+ P+ A A+
Sbjct: 39 TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN 98
Query: 266 KLNGT---TNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
LNG T KV Y R + R+A+L + +S+ E
Sbjct: 99 TLNGLKLQTKTIKVSYA-RPSSASIRDANLYVSGLPKTMSQKEM---------------- 141
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG-KMIGR-KPL 380
E+L + ITS ++ G S+G GF F EA A+ +NG K +G +P+
Sbjct: 142 -EQLFSQYGRI--ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 198
Query: 381 YVAVAQRKEERKAR-LQAQFAQIRAPGGMSPL 411
V A ++ + L Q Q A PL
Sbjct: 199 TVKFANNPSQKTGQALLTQLYQSSARRYAGPL 230
Score = 118 (46.6 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 27/82 (32%), Positives = 40/82 (48%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKML 176
+F+ NL D L F FG V + KV D + + KG+GFV N + A AI L
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 177 NGMLINDKQVYVGLFVRRQERA 198
NG + ++ + V +Q +A
Sbjct: 347 NGYRLGERVLQVSFKTSKQHKA 368
Score = 110 (43.8 bits), Expect = 8.3e-25, Sum P(2) = 8.3e-25
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NL+ + L ++FG FG +T+ V++D + K + FGFV + D AA A+ L
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 268 NGTTNNDKVWYV 279
NG ++V V
Sbjct: 347 NGYRLGERVLQV 358
Score = 105 (42.0 bits), Expect = 2.7e-24, Sum P(2) = 2.7e-24
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L +LF FG +T+ KV+ D KG GF + +EA A+ +
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G + L V+ K+ +
Sbjct: 347 NGYRLGERVLQVSFKTSKQHK 367
Score = 99 (39.9 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 24/90 (26%), Positives = 51/90 (56%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ +LYV L + +++ ++ LFSQ ++++ R+ DQ S G ++ + +A A
Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 183
Query: 87 EALNFM-PING-KPIRIMYSHRDPSIRKSG 114
+ LN P+ +PI + +++ +PS +K+G
Sbjct: 184 KGLNGQKPLGAAEPITVKFAN-NPS-QKTG 211
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 234 (87.4 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 48/151 (31%), Positives = 84/151 (55%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+L V L QN+ + + LF + ++ S ++ RD+ SLGY +VNY +P+DA A
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN + + K I++ Y+ PS N+++ L ++ K L F+ +G +++ ++
Sbjct: 107 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 164
Query: 149 IDS-NGQSKGYGFVQFENEEAAQNAIKMLNG 178
+D G S+G GF++F+ A+ AIK LNG
Sbjct: 165 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 206 (77.6 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 50/155 (32%), Positives = 83/155 (53%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+ + L ++ + F + G + SCK+ D GQS GYGFV + + + A+ AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI-T 234
LNG+ + K + V + R + S + N+YV+ L +T+T ++L+++F +G I T
Sbjct: 107 LNGLRLQTKTIKVS-YAR-----PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 160
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
S I++ G SR GF+ F A A++ LNG
Sbjct: 161 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 149 (57.5 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 63/211 (29%), Positives = 97/211 (45%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVE 265
TN+ VN L + +T E+ + +FG G I S +++D G+S +GFVN+ P A A+
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 266 KLNGT---TNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
LNG T KV Y R + R+A+L +S K + K L
Sbjct: 106 TLNGLRLQTKTIKVSYA-RPSSASIRDANLY-------VSGLPK----TMTQKEL----- 148
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG-KMIGR-KPL 380
E+L + ITS ++ G S+G GF F EA A+ +NG K G +P+
Sbjct: 149 -EQLFSQYGRI--ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 205
Query: 381 YVAVAQRKEERKARLQAQFAQI-RAPGGMSP 410
V A ++ + QA +Q+ ++P P
Sbjct: 206 TVKFANNPSQKSS--QALLSQLYQSPNRRYP 234
Score = 142 (55.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 41/122 (33%), Positives = 68/122 (55%)
Query: 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATR 365
++ ANLY+ L ++ ++L++LFS++G I + +++VDQ G S+G GF F EA
Sbjct: 129 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 188
Query: 366 ALNEMNG-KMIGR-KPLYVAVAQRKEERKARLQAQFAQI-RAPGGMSPLASGIPGYHHGA 422
A+ +NG K G +P+ V A ++ + QA +Q+ ++P P G P HH A
Sbjct: 189 AIKGLNGQKPSGATEPITVKFANNPSQKSS--QALLSQLYQSPNRRYP---G-P-LHHQA 241
Query: 423 PR 424
R
Sbjct: 242 QR 243
Score = 110 (43.8 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NL+ + L ++FG FG + + V++D + K + FGFV + D AA A+ L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 268 NGTTNNDKVWYVGRAQKRAER 288
NG D+V V +A +
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHK 365
Score = 100 (40.3 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 24/89 (26%), Positives = 48/89 (53%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ +LYV L + + + +L LFSQ ++++ R+ DQ S G ++ + +A A
Sbjct: 131 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 190
Query: 87 EALNFMPING--KPIRIMYSHRDPSIRKS 113
+ LN +G +PI + +++ +PS + S
Sbjct: 191 KGLNGQKPSGATEPITVKFAN-NPSQKSS 218
Score = 96 (38.9 bits), Expect = 3.9e-23, Sum P(2) = 3.9e-23
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L +LF FG + + KV+ D + KG GF + +EA A+ +
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G + L V+ K +
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHK 365
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 234 (87.4 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 48/151 (31%), Positives = 84/151 (55%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+L V L QN+ + + LF + ++ S ++ RD+ SLGY +VNY +P+DA A
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN + + K I++ Y+ PS N+++ L ++ K L F+ +G +++ ++
Sbjct: 107 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 164
Query: 149 IDS-NGQSKGYGFVQFENEEAAQNAIKMLNG 178
+D G S+G GF++F+ A+ AIK LNG
Sbjct: 165 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 206 (77.6 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 50/155 (32%), Positives = 83/155 (53%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+ + L ++ + F + G + SCK+ D GQS GYGFV + + + A+ AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI-T 234
LNG+ + K + V + R + S + N+YV+ L +T+T ++L+++F +G I T
Sbjct: 107 LNGLRLQTKTIKVS-YAR-----PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 160
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
S I++ G SR GF+ F A A++ LNG
Sbjct: 161 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 149 (57.5 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 63/211 (29%), Positives = 97/211 (45%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVE 265
TN+ VN L + +T E+ + +FG G I S +++D G+S +GFVN+ P A A+
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 266 KLNGT---TNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
LNG T KV Y R + R+A+L +S K + K L
Sbjct: 106 TLNGLRLQTKTIKVSYA-RPSSASIRDANLY-------VSGLPK----TMTQKEL----- 148
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG-KMIGR-KPL 380
E+L + ITS ++ G S+G GF F EA A+ +NG K G +P+
Sbjct: 149 -EQLFSQYGRI--ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 205
Query: 381 YVAVAQRKEERKARLQAQFAQI-RAPGGMSP 410
V A ++ + QA +Q+ ++P P
Sbjct: 206 TVKFANNPSQKSS--QALLSQLYQSPNRRYP 234
Score = 142 (55.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 41/122 (33%), Positives = 68/122 (55%)
Query: 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATR 365
++ ANLY+ L ++ ++L++LFS++G I + +++VDQ G S+G GF F EA
Sbjct: 129 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 188
Query: 366 ALNEMNG-KMIGR-KPLYVAVAQRKEERKARLQAQFAQI-RAPGGMSPLASGIPGYHHGA 422
A+ +NG K G +P+ V A ++ + QA +Q+ ++P P G P HH A
Sbjct: 189 AIKGLNGQKPSGATEPITVKFANNPSQKSS--QALLSQLYQSPNRRYP---G-P-LHHQA 241
Query: 423 PR 424
R
Sbjct: 242 QR 243
Score = 110 (43.8 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NL+ + L ++FG FG + + V++D + K + FGFV + D AA A+ L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 268 NGTTNNDKVWYVGRAQKRAER 288
NG D+V V +A +
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHK 365
Score = 100 (40.3 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 24/89 (26%), Positives = 48/89 (53%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ +LYV L + + + +L LFSQ ++++ R+ DQ S G ++ + +A A
Sbjct: 131 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 190
Query: 87 EALNFMPING--KPIRIMYSHRDPSIRKS 113
+ LN +G +PI + +++ +PS + S
Sbjct: 191 KGLNGQKPSGATEPITVKFAN-NPSQKSS 218
Score = 96 (38.9 bits), Expect = 3.9e-23, Sum P(2) = 3.9e-23
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L +LF FG + + KV+ D + KG GF + +EA A+ +
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G + L V+ K +
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHK 365
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 230 (86.0 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 47/152 (30%), Positives = 84/152 (55%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+L V L QN+ + + LF + ++ S ++ RD+ SLGY +VNY +P DA A
Sbjct: 39 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 98
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN + + K I++ Y+ PS N+++ L ++ K + F+ +G +++ ++
Sbjct: 99 LNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKDMEQLFSQYGRIITSRIL 156
Query: 149 ID--SNGQSKGYGFVQFENEEAAQNAIKMLNG 178
+D + G S+G GF++F+ A+ AIK LNG
Sbjct: 157 VDQVTAGISRGVGFIRFDKRNEAEEAIKGLNG 188
Score = 199 (75.1 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 47/156 (30%), Positives = 83/156 (53%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+ + L ++ + F + G + SCK+ D GQS GYGFV + + A AI
Sbjct: 39 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 98
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITS 235
LNG+ + K + V + R + S + N+YV+ L +T++ +D++++F +G I +
Sbjct: 99 LNGLKLQTKTIKVS-YAR-----PSSASIRDANLYVSGLPKTMSQKDMEQLFSQYGRIIT 152
Query: 236 AIVMKD--SDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
+ ++ D + G SR GF+ F + A A++ LNG
Sbjct: 153 SRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNG 188
Score = 154 (59.3 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 61/212 (28%), Positives = 97/212 (45%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVE 265
TN+ VN L + +T E+ K +FG G I S +++D G+S +GFVN+ P+ A A+
Sbjct: 38 TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAIN 97
Query: 266 KLNGT---TNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
LNG T KV Y R + R+A+L + +S+ + + + Y + + I
Sbjct: 98 TLNGLKLQTKTIKVSYA-RPSSASIRDANLYVSGLPKTMSQKDMEQLFSQYGRIITSRI- 155
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG-KMIGR-KPL 380
L + +T+ G S+G GF F EA A+ +NG K +G +P+
Sbjct: 156 ------LVDQ---VTA--------GISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPI 198
Query: 381 YVAVAQRKEERKAR-LQAQFAQIRAPGGMSPL 411
V A ++ + L Q Q A PL
Sbjct: 199 TVKFANNPSQKTGQALLTQLYQTAARRYTGPL 230
Score = 122 (48.0 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 28/82 (34%), Positives = 40/82 (48%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKML 176
+F+ NL D L F FG V + KV D + + KG+GFV N + A AI L
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 177 NGMLINDKQVYVGLFVRRQERA 198
NG + D+ + V +Q +A
Sbjct: 338 NGYRLGDRVLQVSFKTSKQHKA 359
Score = 114 (45.2 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NL+ + L ++FG FG +T+ V++D + K + FGFV + D AA A+ L
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 268 NGTTNNDKVWYV 279
NG D+V V
Sbjct: 338 NGYRLGDRVLQV 349
Score = 103 (41.3 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L +LF FG +T+ KV+ D KG GF + +EA A+ +
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G + L V+ K+ +
Sbjct: 338 NGYRLGDRVLQVSFKTSKQHK 358
Score = 94 (38.1 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 24/91 (26%), Positives = 50/91 (54%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRS-SLGYAYVNYSNPQDAANA 85
+ +LYV L + +++ + LFSQ ++++ R+ DQ S G ++ + +A A
Sbjct: 123 DANLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEA 182
Query: 86 KEALNFM-PING-KPIRIMYSHRDPSIRKSG 114
+ LN P+ +PI + +++ +PS +K+G
Sbjct: 183 IKGLNGQKPLGAAEPITVKFAN-NPS-QKTG 211
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 234 (87.4 bits), Expect = 1.6e-24, Sum P(2) = 1.6e-24
Identities = 48/151 (31%), Positives = 84/151 (55%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+L V L QN+ + + LF + ++ S ++ RD+ SLGY +VNY +P+DA A
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN + + K I++ Y+ PS N+++ L ++ K L F+ +G +++ ++
Sbjct: 112 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 169
Query: 149 IDS-NGQSKGYGFVQFENEEAAQNAIKMLNG 178
+D G S+G GF++F+ A+ AIK LNG
Sbjct: 170 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 206 (77.6 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 50/155 (32%), Positives = 83/155 (53%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+ + L ++ + F + G + SCK+ D GQS GYGFV + + + A+ AI
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI-T 234
LNG+ + K + V + R + S + N+YV+ L +T+T ++L+++F +G I T
Sbjct: 112 LNGLRLQTKTIKVS-YAR-----PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 165
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
S I++ G SR GF+ F A A++ LNG
Sbjct: 166 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 149 (57.5 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 63/211 (29%), Positives = 97/211 (45%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVE 265
TN+ VN L + +T E+ + +FG G I S +++D G+S +GFVN+ P A A+
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 266 KLNGT---TNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
LNG T KV Y R + R+A+L +S K + K L
Sbjct: 111 TLNGLRLQTKTIKVSYA-RPSSASIRDANLY-------VSGLPK----TMTQKEL----- 153
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG-KMIGR-KPL 380
E+L + ITS ++ G S+G GF F EA A+ +NG K G +P+
Sbjct: 154 -EQLFSQYGRI--ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 210
Query: 381 YVAVAQRKEERKARLQAQFAQI-RAPGGMSP 410
V A ++ + QA +Q+ ++P P
Sbjct: 211 TVKFANNPSQKSS--QALLSQLYQSPNRRYP 239
Score = 142 (55.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 41/122 (33%), Positives = 68/122 (55%)
Query: 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATR 365
++ ANLY+ L ++ ++L++LFS++G I + +++VDQ G S+G GF F EA
Sbjct: 134 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 193
Query: 366 ALNEMNG-KMIGR-KPLYVAVAQRKEERKARLQAQFAQI-RAPGGMSPLASGIPGYHHGA 422
A+ +NG K G +P+ V A ++ + QA +Q+ ++P P G P HH A
Sbjct: 194 AIKGLNGQKPSGATEPITVKFANNPSQKSS--QALLSQLYQSPNRRYP---G-P-LHHQA 246
Query: 423 PR 424
R
Sbjct: 247 QR 248
Score = 110 (43.8 bits), Expect = 1.6e-24, Sum P(2) = 1.6e-24
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NL+ + L ++FG FG + + V++D + K + FGFV + D AA A+ L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 268 NGTTNNDKVWYVGRAQKRAER 288
NG D+V V +A +
Sbjct: 350 NGYRLGDRVLQVSFKTNKAHK 370
Score = 100 (40.3 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
Identities = 24/89 (26%), Positives = 48/89 (53%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ +LYV L + + + +L LFSQ ++++ R+ DQ S G ++ + +A A
Sbjct: 136 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 195
Query: 87 EALNFMPING--KPIRIMYSHRDPSIRKS 113
+ LN +G +PI + +++ +PS + S
Sbjct: 196 KGLNGQKPSGATEPITVKFAN-NPSQKSS 223
Score = 96 (38.9 bits), Expect = 4.8e-23, Sum P(2) = 4.8e-23
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L +LF FG + + KV+ D + KG GF + +EA A+ +
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G + L V+ K +
Sbjct: 350 NGYRLGDRVLQVSFKTNKAHK 370
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 234 (87.4 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 48/151 (31%), Positives = 84/151 (55%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+L V L QN+ + + LF + ++ S ++ RD+ SLGY +VNY +P+DA A
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN + + K I++ Y+ PS N+++ L ++ K L F+ +G +++ ++
Sbjct: 100 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 157
Query: 149 IDS-NGQSKGYGFVQFENEEAAQNAIKMLNG 178
+D G S+G GF++F+ A+ AIK LNG
Sbjct: 158 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 206 (77.6 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 50/155 (32%), Positives = 83/155 (53%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+ + L ++ + F + G + SCK+ D GQS GYGFV + + + A+ AI
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI-T 234
LNG+ + K + V + R + S + N+YV+ L +T+T ++L+++F +G I T
Sbjct: 100 LNGLRLQTKTIKVS-YAR-----PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
S I++ G SR GF+ F A A++ LNG
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 151 (58.2 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 71/247 (28%), Positives = 108/247 (43%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVE 265
TN+ VN L + +T E+ + +FG G I S +++D G+S +GFVN+ P A A+
Sbjct: 39 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 266 KLNGT---TNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
LNG T KV Y R + R+A+L +S K + K L
Sbjct: 99 TLNGLRLQTKTIKVSYA-RPSSASIRDANLY-------VSGLPK----TMTQKEL----- 141
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG-KMIGR-KPL 380
E+L + ITS ++ G S+G GF F EA A+ +NG K G +P+
Sbjct: 142 -EQLFSQYGRI--ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 198
Query: 381 YVAVAQRKEERKAR-LQAQFAQI---RAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQGT 436
V A ++ ++ L +Q Q R PG + A + G ++L G
Sbjct: 199 TVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRLMSGPVP 258
Query: 437 PGLMPPQ 443
P PP+
Sbjct: 259 PSACPPR 265
Score = 148 (57.2 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 50/160 (31%), Positives = 80/160 (50%)
Query: 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATR 365
++ ANLY+ L ++ ++L++LFS++G I + +++VDQ G S+G GF F EA
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 181
Query: 366 ALNEMNG-KMIGR-KPLYVAVAQRKEERKARLQAQFAQI-RAPGGMSPLASGIPGYHHGA 422
A+ +NG K G +P+ V A ++ + QA +Q+ ++P P G P HH A
Sbjct: 182 AIKGLNGQKPSGATEPITVKFANNPSQKSS--QALLSQLYQSPNRRYP---G-P-LHHQA 234
Query: 423 PRLGPQQLY---YG--QGTPGLMPPQAAGYGFQQQVFPGL 457
R L YG + G +PP A F G+
Sbjct: 235 QRFRLDNLLNMAYGVKRLMSGPVPPSACPPRFSPITIDGM 274
Score = 110 (43.8 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NL+ + L ++FG FG + + V++D + K + FGFV + D AA A+ L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 268 NGTTNNDKVWYVGRAQKRAER 288
NG D+V V +A +
Sbjct: 352 NGYRLGDRVLQVSFKTNKAHK 372
Score = 100 (40.3 bits), Expect = 6.2e-09, Sum P(2) = 6.2e-09
Identities = 24/89 (26%), Positives = 48/89 (53%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ +LYV L + + + +L LFSQ ++++ R+ DQ S G ++ + +A A
Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 183
Query: 87 EALNFMPING--KPIRIMYSHRDPSIRKS 113
+ LN +G +PI + +++ +PS + S
Sbjct: 184 KGLNGQKPSGATEPITVKFAN-NPSQKSS 211
Score = 96 (38.9 bits), Expect = 5.1e-23, Sum P(2) = 5.1e-23
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L +LF FG + + KV+ D + KG GF + +EA A+ +
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G + L V+ K +
Sbjct: 352 NGYRLGDRVLQVSFKTNKAHK 372
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 234 (87.4 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 48/151 (31%), Positives = 84/151 (55%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+L V L QN+ + + LF + ++ S ++ RD+ SLGY +VNY +P+DA A
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN + + K I++ Y+ PS N+++ L ++ K L F+ +G +++ ++
Sbjct: 100 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 157
Query: 149 IDS-NGQSKGYGFVQFENEEAAQNAIKMLNG 178
+D G S+G GF++F+ A+ AIK LNG
Sbjct: 158 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 206 (77.6 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 50/155 (32%), Positives = 83/155 (53%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+ + L ++ + F + G + SCK+ D GQS GYGFV + + + A+ AI
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI-T 234
LNG+ + K + V + R + S + N+YV+ L +T+T ++L+++F +G I T
Sbjct: 100 LNGLRLQTKTIKVS-YAR-----PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
S I++ G SR GF+ F A A++ LNG
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 151 (58.2 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 71/247 (28%), Positives = 108/247 (43%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVE 265
TN+ VN L + +T E+ + +FG G I S +++D G+S +GFVN+ P A A+
Sbjct: 39 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 266 KLNGT---TNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
LNG T KV Y R + R+A+L +S K + K L
Sbjct: 99 TLNGLRLQTKTIKVSYA-RPSSASIRDANLY-------VSGLPK----TMTQKEL----- 141
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG-KMIGR-KPL 380
E+L + ITS ++ G S+G GF F EA A+ +NG K G +P+
Sbjct: 142 -EQLFSQYGRI--ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 198
Query: 381 YVAVAQRKEERKAR-LQAQFAQI---RAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQGT 436
V A ++ ++ L +Q Q R PG + A + G ++L G
Sbjct: 199 TVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRLMSGPVP 258
Query: 437 PGLMPPQ 443
P PP+
Sbjct: 259 PSACPPR 265
Score = 148 (57.2 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 50/160 (31%), Positives = 80/160 (50%)
Query: 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATR 365
++ ANLY+ L ++ ++L++LFS++G I + +++VDQ G S+G GF F EA
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 181
Query: 366 ALNEMNG-KMIGR-KPLYVAVAQRKEERKARLQAQFAQI-RAPGGMSPLASGIPGYHHGA 422
A+ +NG K G +P+ V A ++ + QA +Q+ ++P P G P HH A
Sbjct: 182 AIKGLNGQKPSGATEPITVKFANNPSQKSS--QALLSQLYQSPNRRYP---G-P-LHHQA 234
Query: 423 PRLGPQQLY---YG--QGTPGLMPPQAAGYGFQQQVFPGL 457
R L YG + G +PP A F G+
Sbjct: 235 QRFRLDNLLNMAYGVKRLMSGPVPPSACPPRFSPITIDGM 274
Score = 110 (43.8 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NL+ + L ++FG FG + + V++D + K + FGFV + D AA A+ L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 268 NGTTNNDKVWYVGRAQKRAER 288
NG D+V V +A +
Sbjct: 352 NGYRLGDRVLQVSFKTNKAHK 372
Score = 100 (40.3 bits), Expect = 6.2e-09, Sum P(2) = 6.2e-09
Identities = 24/89 (26%), Positives = 48/89 (53%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ +LYV L + + + +L LFSQ ++++ R+ DQ S G ++ + +A A
Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 183
Query: 87 EALNFMPING--KPIRIMYSHRDPSIRKS 113
+ LN +G +PI + +++ +PS + S
Sbjct: 184 KGLNGQKPSGATEPITVKFAN-NPSQKSS 211
Score = 96 (38.9 bits), Expect = 5.1e-23, Sum P(2) = 5.1e-23
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L +LF FG + + KV+ D + KG GF + +EA A+ +
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G + L V+ K +
Sbjct: 352 NGYRLGDRVLQVSFKTNKAHK 372
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 234 (87.4 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 48/151 (31%), Positives = 84/151 (55%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+L V L QN+ + + LF + ++ S ++ RD+ SLGY +VNY +P+DA A
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN + + K I++ Y+ PS N+++ L ++ K L F+ +G +++ ++
Sbjct: 107 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 164
Query: 149 IDS-NGQSKGYGFVQFENEEAAQNAIKMLNG 178
+D G S+G GF++F+ A+ AIK LNG
Sbjct: 165 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 206 (77.6 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 50/155 (32%), Positives = 83/155 (53%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+ + L ++ + F + G + SCK+ D GQS GYGFV + + + A+ AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI-T 234
LNG+ + K + V + R + S + N+YV+ L +T+T ++L+++F +G I T
Sbjct: 107 LNGLRLQTKTIKVS-YAR-----PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 160
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
S I++ G SR GF+ F A A++ LNG
Sbjct: 161 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 151 (58.2 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 71/247 (28%), Positives = 108/247 (43%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVE 265
TN+ VN L + +T E+ + +FG G I S +++D G+S +GFVN+ P A A+
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 266 KLNGT---TNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
LNG T KV Y R + R+A+L +S K + K L
Sbjct: 106 TLNGLRLQTKTIKVSYA-RPSSASIRDANLY-------VSGLPK----TMTQKEL----- 148
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG-KMIGR-KPL 380
E+L + ITS ++ G S+G GF F EA A+ +NG K G +P+
Sbjct: 149 -EQLFSQYGRI--ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 205
Query: 381 YVAVAQRKEERKAR-LQAQFAQI---RAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQGT 436
V A ++ ++ L +Q Q R PG + A + G ++L G
Sbjct: 206 TVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRLMSGPVP 265
Query: 437 PGLMPPQ 443
P PP+
Sbjct: 266 PSACPPR 272
Score = 148 (57.2 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 50/160 (31%), Positives = 80/160 (50%)
Query: 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATR 365
++ ANLY+ L ++ ++L++LFS++G I + +++VDQ G S+G GF F EA
Sbjct: 129 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 188
Query: 366 ALNEMNG-KMIGR-KPLYVAVAQRKEERKARLQAQFAQI-RAPGGMSPLASGIPGYHHGA 422
A+ +NG K G +P+ V A ++ + QA +Q+ ++P P G P HH A
Sbjct: 189 AIKGLNGQKPSGATEPITVKFANNPSQKSS--QALLSQLYQSPNRRYP---G-P-LHHQA 241
Query: 423 PRLGPQQLY---YG--QGTPGLMPPQAAGYGFQQQVFPGL 457
R L YG + G +PP A F G+
Sbjct: 242 QRFRLDNLLNMAYGVKRLMSGPVPPSACPPRFSPITIDGM 281
Score = 110 (43.8 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NL+ + L ++FG FG + + V++D + K + FGFV + D AA A+ L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 268 NGTTNNDKVWYVGRAQKRAER 288
NG D+V V +A +
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHK 379
Score = 100 (40.3 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 24/89 (26%), Positives = 48/89 (53%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ +LYV L + + + +L LFSQ ++++ R+ DQ S G ++ + +A A
Sbjct: 131 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 190
Query: 87 EALNFMPING--KPIRIMYSHRDPSIRKS 113
+ LN +G +PI + +++ +PS + S
Sbjct: 191 KGLNGQKPSGATEPITVKFAN-NPSQKSS 218
Score = 96 (38.9 bits), Expect = 6.5e-23, Sum P(2) = 6.5e-23
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L +LF FG + + KV+ D + KG GF + +EA A+ +
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G + L V+ K +
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHK 379
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 234 (87.4 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 48/151 (31%), Positives = 84/151 (55%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+L V L QN+ + + LF + ++ S ++ RD+ SLGY +VNY +P+DA A
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN + + K I++ Y+ PS N+++ L ++ K L F+ +G +++ ++
Sbjct: 107 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 164
Query: 149 IDS-NGQSKGYGFVQFENEEAAQNAIKMLNG 178
+D G S+G GF++F+ A+ AIK LNG
Sbjct: 165 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 206 (77.6 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 50/155 (32%), Positives = 83/155 (53%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+ + L ++ + F + G + SCK+ D GQS GYGFV + + + A+ AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI-T 234
LNG+ + K + V + R + S + N+YV+ L +T+T ++L+++F +G I T
Sbjct: 107 LNGLRLQTKTIKVS-YAR-----PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 160
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
S I++ G SR GF+ F A A++ LNG
Sbjct: 161 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 151 (58.2 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 71/247 (28%), Positives = 108/247 (43%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVE 265
TN+ VN L + +T E+ + +FG G I S +++D G+S +GFVN+ P A A+
Sbjct: 46 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 105
Query: 266 KLNGT---TNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
LNG T KV Y R + R+A+L +S K + K L
Sbjct: 106 TLNGLRLQTKTIKVSYA-RPSSASIRDANLY-------VSGLPK----TMTQKEL----- 148
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG-KMIGR-KPL 380
E+L + ITS ++ G S+G GF F EA A+ +NG K G +P+
Sbjct: 149 -EQLFSQYGRI--ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 205
Query: 381 YVAVAQRKEERKAR-LQAQFAQI---RAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQGT 436
V A ++ ++ L +Q Q R PG + A + G ++L G
Sbjct: 206 TVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRLMSGPVP 265
Query: 437 PGLMPPQ 443
P PP+
Sbjct: 266 PSACPPR 272
Score = 148 (57.2 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 50/160 (31%), Positives = 80/160 (50%)
Query: 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATR 365
++ ANLY+ L ++ ++L++LFS++G I + +++VDQ G S+G GF F EA
Sbjct: 129 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 188
Query: 366 ALNEMNG-KMIGR-KPLYVAVAQRKEERKARLQAQFAQI-RAPGGMSPLASGIPGYHHGA 422
A+ +NG K G +P+ V A ++ + QA +Q+ ++P P G P HH A
Sbjct: 189 AIKGLNGQKPSGATEPITVKFANNPSQKSS--QALLSQLYQSPNRRYP---G-P-LHHQA 241
Query: 423 PRLGPQQLY---YG--QGTPGLMPPQAAGYGFQQQVFPGL 457
R L YG + G +PP A F G+
Sbjct: 242 QRFRLDNLLNMAYGVKRLMSGPVPPSACPPRFSPITIDGM 281
Score = 110 (43.8 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NL+ + L ++FG FG + + V++D + K + FGFV + D AA A+ L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 268 NGTTNNDKVWYVGRAQKRAER 288
NG D+V V +A +
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHK 379
Score = 100 (40.3 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 24/89 (26%), Positives = 48/89 (53%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ +LYV L + + + +L LFSQ ++++ R+ DQ S G ++ + +A A
Sbjct: 131 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 190
Query: 87 EALNFMPING--KPIRIMYSHRDPSIRKS 113
+ LN +G +PI + +++ +PS + S
Sbjct: 191 KGLNGQKPSGATEPITVKFAN-NPSQKSS 218
Score = 96 (38.9 bits), Expect = 6.5e-23, Sum P(2) = 6.5e-23
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L +LF FG + + KV+ D + KG GF + +EA A+ +
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G + L V+ K +
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHK 379
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 234 (87.4 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 48/151 (31%), Positives = 84/151 (55%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+L V L QN+ + + LF + ++ S ++ RD+ SLGY +VNY +P+DA A
Sbjct: 63 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 122
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN + + K I++ Y+ PS N+++ L ++ K L F+ +G +++ ++
Sbjct: 123 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 180
Query: 149 IDS-NGQSKGYGFVQFENEEAAQNAIKMLNG 178
+D G S+G GF++F+ A+ AIK LNG
Sbjct: 181 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 211
Score = 206 (77.6 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 50/155 (32%), Positives = 83/155 (53%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+ + L ++ + F + G + SCK+ D GQS GYGFV + + + A+ AI
Sbjct: 63 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 122
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI-T 234
LNG+ + K + V + R + S + N+YV+ L +T+T ++L+++F +G I T
Sbjct: 123 LNGLRLQTKTIKVS-YAR-----PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 176
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
S I++ G SR GF+ F A A++ LNG
Sbjct: 177 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 211
Score = 149 (57.5 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 63/211 (29%), Positives = 97/211 (45%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVE 265
TN+ VN L + +T E+ + +FG G I S +++D G+S +GFVN+ P A A+
Sbjct: 62 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 121
Query: 266 KLNGT---TNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
LNG T KV Y R + R+A+L +S K + K L
Sbjct: 122 TLNGLRLQTKTIKVSYA-RPSSASIRDANLY-------VSGLPK----TMTQKEL----- 164
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG-KMIGR-KPL 380
E+L + ITS ++ G S+G GF F EA A+ +NG K G +P+
Sbjct: 165 -EQLFSQYGRI--ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 221
Query: 381 YVAVAQRKEERKARLQAQFAQI-RAPGGMSP 410
V A ++ + QA +Q+ ++P P
Sbjct: 222 TVKFANNPSQKSS--QALLSQLYQSPNRRYP 250
Score = 142 (55.0 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 41/122 (33%), Positives = 68/122 (55%)
Query: 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATR 365
++ ANLY+ L ++ ++L++LFS++G I + +++VDQ G S+G GF F EA
Sbjct: 145 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 204
Query: 366 ALNEMNG-KMIGR-KPLYVAVAQRKEERKARLQAQFAQI-RAPGGMSPLASGIPGYHHGA 422
A+ +NG K G +P+ V A ++ + QA +Q+ ++P P G P HH A
Sbjct: 205 AIKGLNGQKPSGATEPITVKFANNPSQKSS--QALLSQLYQSPNRRYP---G-P-LHHQA 257
Query: 423 PR 424
R
Sbjct: 258 QR 259
Score = 110 (43.8 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NL+ + L ++FG FG + + V++D + K + FGFV + D AA A+ L
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 268 NGTTNNDKVWYVGRAQKRAER 288
NG D+V V +A +
Sbjct: 361 NGYRLGDRVLQVSFKTNKAHK 381
Score = 100 (40.3 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 24/89 (26%), Positives = 48/89 (53%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ +LYV L + + + +L LFSQ ++++ R+ DQ S G ++ + +A A
Sbjct: 147 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 206
Query: 87 EALNFMPING--KPIRIMYSHRDPSIRKS 113
+ LN +G +PI + +++ +PS + S
Sbjct: 207 KGLNGQKPSGATEPITVKFAN-NPSQKSS 234
Score = 96 (38.9 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L +LF FG + + KV+ D + KG GF + +EA A+ +
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G + L V+ K +
Sbjct: 361 NGYRLGDRVLQVSFKTNKAHK 381
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 234 (87.4 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 48/151 (31%), Positives = 84/151 (55%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+L V L QN+ + + LF + ++ S ++ RD+ SLGY +VNY +P+DA A
Sbjct: 51 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 110
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN + + K I++ Y+ PS N+++ L ++ K L F+ +G +++ ++
Sbjct: 111 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 168
Query: 149 IDS-NGQSKGYGFVQFENEEAAQNAIKMLNG 178
+D G S+G GF++F+ A+ AIK LNG
Sbjct: 169 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 199
Score = 206 (77.6 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 50/155 (32%), Positives = 83/155 (53%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+ + L ++ + F + G + SCK+ D GQS GYGFV + + + A+ AI
Sbjct: 51 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 110
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI-T 234
LNG+ + K + V + R + S + N+YV+ L +T+T ++L+++F +G I T
Sbjct: 111 LNGLRLQTKTIKVS-YAR-----PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 164
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
S I++ G SR GF+ F A A++ LNG
Sbjct: 165 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 199
Score = 151 (58.2 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 71/247 (28%), Positives = 108/247 (43%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVE 265
TN+ VN L + +T E+ + +FG G I S +++D G+S +GFVN+ P A A+
Sbjct: 50 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 109
Query: 266 KLNGT---TNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
LNG T KV Y R + R+A+L +S K + K L
Sbjct: 110 TLNGLRLQTKTIKVSYA-RPSSASIRDANLY-------VSGLPK----TMTQKEL----- 152
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG-KMIGR-KPL 380
E+L + ITS ++ G S+G GF F EA A+ +NG K G +P+
Sbjct: 153 -EQLFSQYGRI--ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 209
Query: 381 YVAVAQRKEERKAR-LQAQFAQI---RAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQGT 436
V A ++ ++ L +Q Q R PG + A + G ++L G
Sbjct: 210 TVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRLMSGPVP 269
Query: 437 PGLMPPQ 443
P PP+
Sbjct: 270 PSACPPR 276
Score = 148 (57.2 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 50/160 (31%), Positives = 80/160 (50%)
Query: 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATR 365
++ ANLY+ L ++ ++L++LFS++G I + +++VDQ G S+G GF F EA
Sbjct: 133 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 192
Query: 366 ALNEMNG-KMIGR-KPLYVAVAQRKEERKARLQAQFAQI-RAPGGMSPLASGIPGYHHGA 422
A+ +NG K G +P+ V A ++ + QA +Q+ ++P P G P HH A
Sbjct: 193 AIKGLNGQKPSGATEPITVKFANNPSQKSS--QALLSQLYQSPNRRYP---G-P-LHHQA 245
Query: 423 PRLGPQQLY---YG--QGTPGLMPPQAAGYGFQQQVFPGL 457
R L YG + G +PP A F G+
Sbjct: 246 QRFRLDNLLNMAYGVKRLMSGPVPPSACPPRFSPITIDGM 285
Score = 110 (43.8 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NL+ + L ++FG FG + + V++D + K + FGFV + D AA A+ L
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 268 NGTTNNDKVWYVGRAQKRAER 288
NG D+V V +A +
Sbjct: 363 NGYRLGDRVLQVSFKTNKAHK 383
Score = 100 (40.3 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 24/89 (26%), Positives = 48/89 (53%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ +LYV L + + + +L LFSQ ++++ R+ DQ S G ++ + +A A
Sbjct: 135 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 194
Query: 87 EALNFMPING--KPIRIMYSHRDPSIRKS 113
+ LN +G +PI + +++ +PS + S
Sbjct: 195 KGLNGQKPSGATEPITVKFAN-NPSQKSS 222
Score = 96 (38.9 bits), Expect = 7.4e-23, Sum P(2) = 7.4e-23
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L +LF FG + + KV+ D + KG GF + +EA A+ +
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G + L V+ K +
Sbjct: 363 NGYRLGDRVLQVSFKTNKAHK 383
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 234 (87.4 bits), Expect = 2.6e-24, Sum P(2) = 2.6e-24
Identities = 48/151 (31%), Positives = 84/151 (55%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+L V L QN+ + + LF + ++ S ++ RD+ SLGY +VNY +P+DA A
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN + + K I++ Y+ PS N+++ L ++ K L F+ +G +++ ++
Sbjct: 112 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 169
Query: 149 IDS-NGQSKGYGFVQFENEEAAQNAIKMLNG 178
+D G S+G GF++F+ A+ AIK LNG
Sbjct: 170 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 206 (77.6 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 50/155 (32%), Positives = 83/155 (53%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+ + L ++ + F + G + SCK+ D GQS GYGFV + + + A+ AI
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI-T 234
LNG+ + K + V + R + S + N+YV+ L +T+T ++L+++F +G I T
Sbjct: 112 LNGLRLQTKTIKVS-YAR-----PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 165
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
S I++ G SR GF+ F A A++ LNG
Sbjct: 166 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 151 (58.2 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 71/247 (28%), Positives = 108/247 (43%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVE 265
TN+ VN L + +T E+ + +FG G I S +++D G+S +GFVN+ P A A+
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 266 KLNGT---TNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
LNG T KV Y R + R+A+L +S K + K L
Sbjct: 111 TLNGLRLQTKTIKVSYA-RPSSASIRDANLY-------VSGLPK----TMTQKEL----- 153
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG-KMIGR-KPL 380
E+L + ITS ++ G S+G GF F EA A+ +NG K G +P+
Sbjct: 154 -EQLFSQYGRI--ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 210
Query: 381 YVAVAQRKEERKAR-LQAQFAQI---RAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQGT 436
V A ++ ++ L +Q Q R PG + A + G ++L G
Sbjct: 211 TVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRLMSGPVP 270
Query: 437 PGLMPPQ 443
P PP+
Sbjct: 271 PSACPPR 277
Score = 148 (57.2 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 50/160 (31%), Positives = 80/160 (50%)
Query: 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATR 365
++ ANLY+ L ++ ++L++LFS++G I + +++VDQ G S+G GF F EA
Sbjct: 134 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 193
Query: 366 ALNEMNG-KMIGR-KPLYVAVAQRKEERKARLQAQFAQI-RAPGGMSPLASGIPGYHHGA 422
A+ +NG K G +P+ V A ++ + QA +Q+ ++P P G P HH A
Sbjct: 194 AIKGLNGQKPSGATEPITVKFANNPSQKSS--QALLSQLYQSPNRRYP---G-P-LHHQA 246
Query: 423 PRLGPQQLY---YG--QGTPGLMPPQAAGYGFQQQVFPGL 457
R L YG + G +PP A F G+
Sbjct: 247 QRFRLDNLLNMAYGVKRLMSGPVPPSACPPRFSPITIDGM 286
Score = 110 (43.8 bits), Expect = 2.6e-24, Sum P(2) = 2.6e-24
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NL+ + L ++FG FG + + V++D + K + FGFV + D AA A+ L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 268 NGTTNNDKVWYVGRAQKRAER 288
NG D+V V +A +
Sbjct: 364 NGYRLGDRVLQVSFKTNKAHK 384
Score = 100 (40.3 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 24/89 (26%), Positives = 48/89 (53%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ +LYV L + + + +L LFSQ ++++ R+ DQ S G ++ + +A A
Sbjct: 136 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 195
Query: 87 EALNFMPING--KPIRIMYSHRDPSIRKS 113
+ LN +G +PI + +++ +PS + S
Sbjct: 196 KGLNGQKPSGATEPITVKFAN-NPSQKSS 223
Score = 96 (38.9 bits), Expect = 7.6e-23, Sum P(2) = 7.6e-23
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L +LF FG + + KV+ D + KG GF + +EA A+ +
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G + L V+ K +
Sbjct: 364 NGYRLGDRVLQVSFKTNKAHK 384
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 234 (87.4 bits), Expect = 2.6e-24, Sum P(2) = 2.6e-24
Identities = 48/151 (31%), Positives = 84/151 (55%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+L V L QN+ + + LF + ++ S ++ RD+ SLGY +VNY +P+DA A
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN + + K I++ Y+ PS N+++ L ++ K L F+ +G +++ ++
Sbjct: 112 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 169
Query: 149 IDS-NGQSKGYGFVQFENEEAAQNAIKMLNG 178
+D G S+G GF++F+ A+ AIK LNG
Sbjct: 170 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 206 (77.6 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 50/155 (32%), Positives = 83/155 (53%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+ + L ++ + F + G + SCK+ D GQS GYGFV + + + A+ AI
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI-T 234
LNG+ + K + V + R + S + N+YV+ L +T+T ++L+++F +G I T
Sbjct: 112 LNGLRLQTKTIKVS-YAR-----PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 165
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
S I++ G SR GF+ F A A++ LNG
Sbjct: 166 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 151 (58.2 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 71/247 (28%), Positives = 108/247 (43%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVE 265
TN+ VN L + +T E+ + +FG G I S +++D G+S +GFVN+ P A A+
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 266 KLNGT---TNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
LNG T KV Y R + R+A+L +S K + K L
Sbjct: 111 TLNGLRLQTKTIKVSYA-RPSSASIRDANLY-------VSGLPK----TMTQKEL----- 153
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG-KMIGR-KPL 380
E+L + ITS ++ G S+G GF F EA A+ +NG K G +P+
Sbjct: 154 -EQLFSQYGRI--ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 210
Query: 381 YVAVAQRKEERKAR-LQAQFAQI---RAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQGT 436
V A ++ ++ L +Q Q R PG + A + G ++L G
Sbjct: 211 TVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRLMSGPVP 270
Query: 437 PGLMPPQ 443
P PP+
Sbjct: 271 PSACPPR 277
Score = 148 (57.2 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 50/160 (31%), Positives = 80/160 (50%)
Query: 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATR 365
++ ANLY+ L ++ ++L++LFS++G I + +++VDQ G S+G GF F EA
Sbjct: 134 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 193
Query: 366 ALNEMNG-KMIGR-KPLYVAVAQRKEERKARLQAQFAQI-RAPGGMSPLASGIPGYHHGA 422
A+ +NG K G +P+ V A ++ + QA +Q+ ++P P G P HH A
Sbjct: 194 AIKGLNGQKPSGATEPITVKFANNPSQKSS--QALLSQLYQSPNRRYP---G-P-LHHQA 246
Query: 423 PRLGPQQLY---YG--QGTPGLMPPQAAGYGFQQQVFPGL 457
R L YG + G +PP A F G+
Sbjct: 247 QRFRLDNLLNMAYGVKRLMSGPVPPSACPPRFSPITIDGM 286
Score = 110 (43.8 bits), Expect = 2.6e-24, Sum P(2) = 2.6e-24
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NL+ + L ++FG FG + + V++D + K + FGFV + D AA A+ L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 268 NGTTNNDKVWYVGRAQKRAER 288
NG D+V V +A +
Sbjct: 364 NGYRLGDRVLQVSFKTNKAHK 384
Score = 100 (40.3 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 24/89 (26%), Positives = 48/89 (53%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ +LYV L + + + +L LFSQ ++++ R+ DQ S G ++ + +A A
Sbjct: 136 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 195
Query: 87 EALNFMPING--KPIRIMYSHRDPSIRKS 113
+ LN +G +PI + +++ +PS + S
Sbjct: 196 KGLNGQKPSGATEPITVKFAN-NPSQKSS 223
Score = 96 (38.9 bits), Expect = 7.6e-23, Sum P(2) = 7.6e-23
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L +LF FG + + KV+ D + KG GF + +EA A+ +
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G + L V+ K +
Sbjct: 364 NGYRLGDRVLQVSFKTNKAHK 384
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 234 (87.4 bits), Expect = 3.4e-24, Sum P(2) = 3.4e-24
Identities = 48/151 (31%), Positives = 84/151 (55%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+L V L QN+ + + LF + ++ S ++ RD+ SLGY +VNY +P+DA A
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN + + K I++ Y+ PS N+++ L ++ K L F+ +G +++ ++
Sbjct: 112 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 169
Query: 149 IDS-NGQSKGYGFVQFENEEAAQNAIKMLNG 178
+D G S+G GF++F+ A+ AIK LNG
Sbjct: 170 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 206 (77.6 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 50/155 (32%), Positives = 83/155 (53%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+ + L ++ + F + G + SCK+ D GQS GYGFV + + + A+ AI
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI-T 234
LNG+ + K + V + R + S + N+YV+ L +T+T ++L+++F +G I T
Sbjct: 112 LNGLRLQTKTIKVS-YAR-----PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 165
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
S I++ G SR GF+ F A A++ LNG
Sbjct: 166 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 148 (57.2 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 63/211 (29%), Positives = 97/211 (45%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVE 265
TN+ VN L + +T E+ + +FG G I S +++D G+S +GFVN+ P A A+
Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110
Query: 266 KLNGT---TNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
LNG T KV Y R + R+A+L +S K + K L
Sbjct: 111 TLNGLRLQTKTIKVSYA-RPSSASIRDANLY-------VSGLPK----TMTQKEL----- 153
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG-KMIGR-KPL 380
E+L + ITS ++ G S+G GF F EA A+ +NG K G +P+
Sbjct: 154 -EQLFSQYGRI--ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 210
Query: 381 YVAVAQRKEERKARLQAQFAQI-RAPGGMSP 410
V A ++ + QA +Q+ ++P P
Sbjct: 211 TVKFANNPSQKTS--QALLSQLYQSPNRRYP 239
Score = 141 (54.7 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 41/122 (33%), Positives = 68/122 (55%)
Query: 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATR 365
++ ANLY+ L ++ ++L++LFS++G I + +++VDQ G S+G GF F EA
Sbjct: 134 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 193
Query: 366 ALNEMNG-KMIGR-KPLYVAVAQRKEERKARLQAQFAQI-RAPGGMSPLASGIPGYHHGA 422
A+ +NG K G +P+ V A ++ + QA +Q+ ++P P G P HH A
Sbjct: 194 AIKGLNGQKPSGATEPITVKFANNPSQKTS--QALLSQLYQSPNRRYP---G-P-LHHQA 246
Query: 423 PR 424
R
Sbjct: 247 QR 248
Score = 107 (42.7 bits), Expect = 3.4e-24, Sum P(2) = 3.4e-24
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NL+ + L ++FG FG + + V++D + K + FGFV + D AA A+ L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 268 NGTTNNDKVWYV 279
NG D+V V
Sbjct: 350 NGYRLGDRVLQV 361
Score = 99 (39.9 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 24/89 (26%), Positives = 48/89 (53%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ +LYV L + + + +L LFSQ ++++ R+ DQ S G ++ + +A A
Sbjct: 136 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 195
Query: 87 EALNFMPING--KPIRIMYSHRDPSIRKS 113
+ LN +G +PI + +++ +PS + S
Sbjct: 196 KGLNGQKPSGATEPITVKFAN-NPSQKTS 223
Score = 96 (38.9 bits), Expect = 4.8e-23, Sum P(2) = 4.8e-23
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L +LF FG + + KV+ D + KG GF + +EA A+ +
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G + L V+ K +
Sbjct: 350 NGYRLGDRVLQVSFKTNKTHK 370
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 270 (100.1 bits), Expect = 3.6e-24, Sum P(2) = 3.6e-24
Identities = 59/179 (32%), Positives = 102/179 (56%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ ++YVG L++ V+E L++LF Q VV+ + +D+ GY +V + + +DA A
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 87 EALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSC- 145
+ +N + + GKPIR+ + G N+FI NLD ID K L DTF+AFG +L
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQTP 130
Query: 146 KVAIDSN-GQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVS 203
K+ D + G SKGY F+ F + +A+ AI+ +NG + ++ + V ++ + +++ S
Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGS 189
Score = 197 (74.4 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 51/165 (30%), Positives = 85/165 (51%)
Query: 108 PSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENE 166
P ++ V++ LD + L + F G V++ + D GQ +GYGFV+F +E
Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 167 EAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKI 226
E A AIK++N + + K + V + +N+ N+++ NL + ++ L
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVN----KASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDT 119
Query: 227 FGHFGTITSAI-VMKDSD-GKSRCFGFVNFQSPDAAAAAVEKLNG 269
F FG I +M+D D G S+ + F+NF S DA+ AA+E +NG
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG 164
Score = 148 (57.2 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 56/188 (29%), Positives = 86/188 (45%)
Query: 309 GANLYLKNLDDSINDEKLKELFSEFGTITSC-KVMVDQH-GFSKGSGFAAFSMPEEATRA 366
GAN+++ NLD I+++ L + FS FG I K+M D G SKG F F+ + + A
Sbjct: 99 GANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAA 158
Query: 367 LNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRAPGGMSPLASGIPGYHHGA---- 422
+ MNG+ + +P+ V+ A +K+ + R A+ R +PL+ + A
Sbjct: 159 IEAMNGQYLCNRPITVSYAFKKDSKGER-HGSAAE-RLLAAQNPLSQADRPHQLFADAPP 216
Query: 423 PRLGPQQLYYGQGTPGLMPPQAAGYG-FQQQVFP--GLRPGGPNYIMPYHLQRQVH-PGQ 478
P P + G PG+ PP G F V P + PG P + P + PG
Sbjct: 217 PPSVPTPVVTALG-PGVTPPGLPPPGSFPPPVPPPGAMPPGMPPAMPPPPMPPGAGAPGP 275
Query: 479 RTGVRRSG 486
TG +G
Sbjct: 276 PTGAAPTG 283
Score = 93 (37.8 bits), Expect = 0.00093, Sum P(2) = 0.00093
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 305 EKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEA 363
E+ + A +Y+ LD+ +++ L ELF + G + + + D+ G +G GF F E+A
Sbjct: 8 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67
Query: 364 TRALNEMNG-KMIGRKPLYV 382
A+ MN K+ G KP+ V
Sbjct: 68 DYAIKIMNMIKLYG-KPIRV 86
Score = 69 (29.3 bits), Expect = 3.6e-24, Sum P(2) = 3.6e-24
Identities = 32/97 (32%), Positives = 39/97 (40%)
Query: 404 AP-GGMSPLASGIP--GYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYGFQQ--QVFPGL- 457
AP GG P P G HH P + P Q+++G G P G G Q + PG+
Sbjct: 280 APTGGHPPHPHAFPPGGMHH--PGMPPMQVHHGPPGMGQHHPGPPGSGGQPPPRPPPGMP 337
Query: 458 RPGGPNYIMPYHLQRQVHPGQRTGVRRSGNTHQMQQP 494
PG P MP R H G G H M+ P
Sbjct: 338 HPGPPPMGMP---PRGPHFGSPMGHPGPMPHHGMRGP 371
Score = 63 (27.2 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 24/68 (35%), Positives = 29/68 (42%)
Query: 403 RAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYGFQQ--------QVF 454
R P SP+ P HHG GP L G G PP+ YG+Q+ Q
Sbjct: 349 RGPHFGSPMGHPGPMPHHGMR--GPPPLMPPHGYNG--PPRPPPYGYQRVPLPPRPAQRP 404
Query: 455 PGLRPGGP 462
PG+ P GP
Sbjct: 405 PGVPPRGP 412
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 227 (85.0 bits), Expect = 4.7e-24, Sum P(2) = 4.7e-24
Identities = 53/166 (31%), Positives = 90/166 (54%)
Query: 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQ--------SKRSSLGYAY 73
PS +L + L QN+++ +L LFS + +V S ++ RD+ + SLGY +
Sbjct: 51 PSD-AKTNLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYGF 109
Query: 74 VNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALC 133
VNY NP DA A LN + + K I++ Y+ PS N++I L ++ K +
Sbjct: 110 VNYVNPSDAERAINTLNGLRLQSKTIKVSYAR--PSSDGIKDANLYISGLPKTMTQKNVE 167
Query: 134 DTFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKMLNG 178
D F +G +++ ++ +D ++G S+G F++F+ A+ AIK LNG
Sbjct: 168 DMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNG 213
Score = 174 (66.3 bits), Expect = 6.3e-17, Sum P(2) = 6.3e-17
Identities = 51/174 (29%), Positives = 86/174 (49%)
Query: 107 DPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSN---------GQSKG 157
+PS K+ N+ I L ++ + L F++ G V S K+ D G S G
Sbjct: 50 EPSDAKT---NLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLG 106
Query: 158 YGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAET 217
YGFV + N A+ AI LNG+ + K + V + R + + K N+Y++ L +T
Sbjct: 107 YGFVNYVNPSDAERAINTLNGLRLQSKTIKVS-YARP---SSDGI--KDANLYISGLPKT 160
Query: 218 VTDEDLKKIFGHFGTI-TSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGT 270
+T ++++ +F +G I S I++ + G SR F+ F A A++ LNG+
Sbjct: 161 MTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGS 214
Score = 156 (60.0 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 57/214 (26%), Positives = 105/214 (49%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEK 266
TN+ +N L + ++ E+L+ +F G + SA +++D A +A
Sbjct: 56 TNLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKM---------------AGMSAHHT 100
Query: 267 LNGTTNNDKVWYVGRAQ-KRAEREAD-LRAKFEQERISRYEK-----LKGANLYLKNLDD 319
L + V YV + +RA + LR + + ++S Y + +K ANLY+ L
Sbjct: 101 LGHSLGYGFVNYVNPSDAERAINTLNGLRLQSKTIKVS-YARPSSDGIKDANLYISGLPK 159
Query: 320 SINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNG-KMIGR 377
++ + ++++F+++G I + +++VDQ G S+G F F EA A+ ++NG K G
Sbjct: 160 TMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGSKPSGA 219
Query: 378 -KPLYVAVAQRKEERK-ARLQAQF--AQIRAPGG 407
+P+ V A + K ++L +Q Q R GG
Sbjct: 220 SEPITVKFAANPNQSKNSQLLSQLYHTQSRRFGG 253
Score = 120 (47.3 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 32/81 (39%), Positives = 40/81 (49%)
Query: 109 SIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSN-GQSKGYGFVQFENEE 167
S SG+ +F+ NL D L F FG V + KV D N + KG+GFV N E
Sbjct: 280 SSSSSGWC-IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYE 338
Query: 168 AAQNAIKMLNGMLINDKQVYV 188
A AI LNG + DK + V
Sbjct: 339 EAAMAISSLNGYRLGDKVLQV 359
Score = 114 (45.2 bits), Expect = 4.7e-24, Sum P(2) = 4.7e-24
Identities = 26/81 (32%), Positives = 44/81 (54%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NL + + L ++FG FG +T+ V++D + K + FGFV + + AA A+ L
Sbjct: 288 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAISSL 347
Query: 268 NGTTNNDKVWYVGRAQKRAER 288
NG DKV V ++ +
Sbjct: 348 NGYRLGDKVLQVSFKSSKSHK 368
Score = 107 (42.7 bits), Expect = 2.5e-23, Sum P(2) = 2.5e-23
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFS-KGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L ++F FG +T+ KV+ D + KG GF + EEA A++ +
Sbjct: 288 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAISSL 347
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G K L V+ K +
Sbjct: 348 NGYRLGDKVLQVSFKSSKSHK 368
Score = 100 (40.3 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 22/92 (23%), Positives = 50/92 (54%)
Query: 24 GYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAA 83
G + +LY+ L + + + + D+F+Q ++++ R+ DQ+ S G A++ + +A
Sbjct: 146 GIKDANLYISGLPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAE 205
Query: 84 NAKEALNFMPING--KPIRIMYSHRDPSIRKS 113
A + LN +G +PI + ++ +P+ K+
Sbjct: 206 EAIKDLNGSKPSGASEPITVKFA-ANPNQSKN 236
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 234 (87.4 bits), Expect = 9.6e-24, Sum P(2) = 9.6e-24
Identities = 48/151 (31%), Positives = 84/151 (55%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+L V L QN+ + + LF + ++ S ++ RD+ SLGY +VNY +P+DA A
Sbjct: 89 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 148
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN + + K I++ Y+ PS N+++ L ++ K L F+ +G +++ ++
Sbjct: 149 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 206
Query: 149 IDS-NGQSKGYGFVQFENEEAAQNAIKMLNG 178
+D G S+G GF++F+ A+ AIK LNG
Sbjct: 207 VDQVTGGSRGVGFIRFDKRIEAEEAIKGLNG 237
Score = 206 (77.6 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
Identities = 50/155 (32%), Positives = 83/155 (53%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+ + L ++ + F + G + SCK+ D GQS GYGFV + + + A+ AI
Sbjct: 89 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 148
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI-T 234
LNG+ + K + V + R + S + N+YV+ L +T+T ++L+++F +G I T
Sbjct: 149 LNGLRLQTKTIKVS-YAR-----PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 202
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
S I++ G SR GF+ F A A++ LNG
Sbjct: 203 SRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNG 237
Score = 146 (56.5 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 63/211 (29%), Positives = 97/211 (45%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVE 265
TN+ VN L + +T E+ + +FG G I S +++D G+S +GFVN+ P A A+
Sbjct: 88 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 147
Query: 266 KLNGT---TNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
LNG T KV Y R + R+A+L +S K + K L
Sbjct: 148 TLNGLRLQTKTIKVSYA-RPSSASIRDANLY-------VSGLPK----TMTQKEL----- 190
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG-KMIGR-KPL 380
E+L + ITS ++ G S+G GF F EA A+ +NG K G +P+
Sbjct: 191 -EQLFSQYGRI--ITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPI 247
Query: 381 YVAVAQRKEERKARLQAQFAQI-RAPGGMSP 410
V A ++ + QA +Q+ ++P P
Sbjct: 248 TVKFANNPSQKTS--QALLSQLYQSPNRRYP 276
Score = 139 (54.0 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 41/122 (33%), Positives = 68/122 (55%)
Query: 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATR 365
++ ANLY+ L ++ ++L++LFS++G I + +++VDQ G S+G GF F EA
Sbjct: 171 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEE 230
Query: 366 ALNEMNG-KMIGR-KPLYVAVAQRKEERKARLQAQFAQI-RAPGGMSPLASGIPGYHHGA 422
A+ +NG K G +P+ V A ++ + QA +Q+ ++P P G P HH A
Sbjct: 231 AIKGLNGQKPSGAAEPITVKFANNPSQKTS--QALLSQLYQSPNRRYP---G-P-LHHQA 283
Query: 423 PR 424
R
Sbjct: 284 QR 285
Score = 107 (42.7 bits), Expect = 9.6e-24, Sum P(2) = 9.6e-24
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NL+ + L ++FG FG + + V++D + K + FGFV + D AA A+ L
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 268 NGTTNNDKVWYV 279
NG D+V V
Sbjct: 387 NGYRLGDRVLQV 398
Score = 101 (40.6 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 24/89 (26%), Positives = 48/89 (53%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ +LYV L + + + +L LFSQ ++++ R+ DQ S G ++ + +A A
Sbjct: 173 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAI 232
Query: 87 EALNFMPING--KPIRIMYSHRDPSIRKS 113
+ LN +G +PI + +++ +PS + S
Sbjct: 233 KGLNGQKPSGAAEPITVKFAN-NPSQKTS 260
Score = 96 (38.9 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L +LF FG + + KV+ D + KG GF + +EA A+ +
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G + L V+ K +
Sbjct: 387 NGYRLGDRVLQVSFKTNKTHK 407
>WB|WBGene00004723 [details] [associations]
symbol:sap-49 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 275 (101.9 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 57/177 (32%), Positives = 102/177 (57%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ ++YVG L++ V+ES L++L Q VVSV + +D+ + G+ +V + +DA A
Sbjct: 12 DATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAI 71
Query: 87 EALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSC- 145
+ LN + + GKPI++ + G N+F+ NLD +D K L DTF+AFG +L
Sbjct: 72 KILNMIKLYGKPIKVNKASAHEKNMDVG-ANIFVGNLDPEVDEKLLYDTFSAFGVILQVP 130
Query: 146 KVAID-SNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQN 201
K+ D +G SKG+ F+ F + EA+ A++ +NG + ++ + V +R + +++
Sbjct: 131 KIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERH 187
Score = 185 (70.2 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 53/181 (29%), Positives = 88/181 (48%)
Query: 108 PSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENE 166
P + ++ +++ LD + L + G V+S + D +G+GFV+F E
Sbjct: 5 PIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGE 64
Query: 167 EAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKI 226
E A AIK+LN + + K + V + ++N+ N++V NL V ++ L
Sbjct: 65 EDADYAIKILNMIKLYGKPIKVN----KASAHEKNMDVG-ANIFVGNLDPEVDEKLLYDT 119
Query: 227 FGHFGTITSAI-VMKDSD-GKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQK 284
F FG I +M+D D G S+ F F+NF S +A+ A+E +NG ++ V A K
Sbjct: 120 FSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFK 179
Query: 285 R 285
R
Sbjct: 180 R 180
Score = 142 (55.0 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 53/182 (29%), Positives = 83/182 (45%)
Query: 300 RISRYEKLK--GANLYLKNLDDSINDEKLKELFSEFGTITSC-KVMVD-QHGFSKGSGFA 355
+ S +EK GAN+++ NLD ++++ L + FS FG I K+M D G SKG F
Sbjct: 88 KASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFI 147
Query: 356 AFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKAR--------LQAQ---FAQIRA 404
F+ E + AL MNG+ + + + V+ A +++ + R L AQ F + R
Sbjct: 148 NFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPLFPKDRP 207
Query: 405 PGGMSPLASGIPGYHHGA-PRLGPQQLYYGQGTPGLMPPQAAGYGFQ--QQVFPGLRPGG 461
S + G+P A P + + G PG PP G Q +P + P
Sbjct: 208 HQVFSDVPLGVPANTPLAMPGVHAAIAAHATGRPGYQPPPLMGMAQSGYQGQYPPVPPPP 267
Query: 462 PN 463
P+
Sbjct: 268 PS 269
Score = 49 (22.3 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 20/62 (32%), Positives = 25/62 (40%)
Query: 405 PGGMSPLASGIPGYHHGAP--RLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGP 462
P G +P G+PG P R GP G G G+ PP G + + P P P
Sbjct: 303 PPGRTPGPPGMPGMPPPPPPSRFGPP----GMG--GMPPPPPPGMRYPGGMPP---PPPP 353
Query: 463 NY 464
Y
Sbjct: 354 RY 355
Score = 44 (20.5 bits), Expect = 3.5e-23, Sum P(2) = 3.5e-23
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 406 GGMSPLASGIPG--YHHGAPRLGPQQLYYGQGTPGLMPP 442
GGM P PG Y G P P + Y PG+ PP
Sbjct: 331 GGMPPPPP--PGMRYPGGMPPPPPPR--YPSAGPGMYPP 365
Score = 43 (20.2 bits), Expect = 4.5e-23, Sum P(2) = 4.5e-23
Identities = 16/47 (34%), Positives = 19/47 (40%)
Query: 402 IRAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYG 448
+R PGGM P P Y P GP Y P P +G+G
Sbjct: 341 MRYPGGMPPPPP--PRY----PSAGPGM--YPPPPPSRPPAPPSGHG 379
>UNIPROTKB|Q09442 [details] [associations]
symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 275 (101.9 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 57/177 (32%), Positives = 102/177 (57%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ ++YVG L++ V+ES L++L Q VVSV + +D+ + G+ +V + +DA A
Sbjct: 12 DATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAI 71
Query: 87 EALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSC- 145
+ LN + + GKPI++ + G N+F+ NLD +D K L DTF+AFG +L
Sbjct: 72 KILNMIKLYGKPIKVNKASAHEKNMDVG-ANIFVGNLDPEVDEKLLYDTFSAFGVILQVP 130
Query: 146 KVAID-SNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQN 201
K+ D +G SKG+ F+ F + EA+ A++ +NG + ++ + V +R + +++
Sbjct: 131 KIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERH 187
Score = 185 (70.2 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 53/181 (29%), Positives = 88/181 (48%)
Query: 108 PSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENE 166
P + ++ +++ LD + L + G V+S + D +G+GFV+F E
Sbjct: 5 PIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGE 64
Query: 167 EAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKI 226
E A AIK+LN + + K + V + ++N+ N++V NL V ++ L
Sbjct: 65 EDADYAIKILNMIKLYGKPIKVN----KASAHEKNMDVG-ANIFVGNLDPEVDEKLLYDT 119
Query: 227 FGHFGTITSAI-VMKDSD-GKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQK 284
F FG I +M+D D G S+ F F+NF S +A+ A+E +NG ++ V A K
Sbjct: 120 FSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFK 179
Query: 285 R 285
R
Sbjct: 180 R 180
Score = 142 (55.0 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 53/182 (29%), Positives = 83/182 (45%)
Query: 300 RISRYEKLK--GANLYLKNLDDSINDEKLKELFSEFGTITSC-KVMVD-QHGFSKGSGFA 355
+ S +EK GAN+++ NLD ++++ L + FS FG I K+M D G SKG F
Sbjct: 88 KASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFI 147
Query: 356 AFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKAR--------LQAQ---FAQIRA 404
F+ E + AL MNG+ + + + V+ A +++ + R L AQ F + R
Sbjct: 148 NFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPLFPKDRP 207
Query: 405 PGGMSPLASGIPGYHHGA-PRLGPQQLYYGQGTPGLMPPQAAGYGFQ--QQVFPGLRPGG 461
S + G+P A P + + G PG PP G Q +P + P
Sbjct: 208 HQVFSDVPLGVPANTPLAMPGVHAAIAAHATGRPGYQPPPLMGMAQSGYQGQYPPVPPPP 267
Query: 462 PN 463
P+
Sbjct: 268 PS 269
Score = 49 (22.3 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 20/62 (32%), Positives = 25/62 (40%)
Query: 405 PGGMSPLASGIPGYHHGAP--RLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGP 462
P G +P G+PG P R GP G G G+ PP G + + P P P
Sbjct: 303 PPGRTPGPPGMPGMPPPPPPSRFGPP----GMG--GMPPPPPPGMRYPGGMPP---PPPP 353
Query: 463 NY 464
Y
Sbjct: 354 RY 355
Score = 44 (20.5 bits), Expect = 3.5e-23, Sum P(2) = 3.5e-23
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 406 GGMSPLASGIPG--YHHGAPRLGPQQLYYGQGTPGLMPP 442
GGM P PG Y G P P + Y PG+ PP
Sbjct: 331 GGMPPPPP--PGMRYPGGMPPPPPPR--YPSAGPGMYPP 365
Score = 43 (20.2 bits), Expect = 4.5e-23, Sum P(2) = 4.5e-23
Identities = 16/47 (34%), Positives = 19/47 (40%)
Query: 402 IRAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYG 448
+R PGGM P P Y P GP Y P P +G+G
Sbjct: 341 MRYPGGMPPPPP--PRY----PSAGPGM--YPPPPPSRPPAPPSGHG 379
>UNIPROTKB|G4NH06 [details] [associations]
symbol:MGG_03973 "Splicing factor 3B subunit 4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 KO:K12831 RefSeq:XP_003719883.1
EnsemblFungi:MGG_03973T0 GeneID:2677428 KEGG:mgr:MGG_03973
Uniprot:G4NH06
Length = 407
Score = 266 (98.7 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 55/174 (31%), Positives = 99/174 (56%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
++YVG+L++ E+ ++++ +Q+ VV++ + D+ R+ GY +V + P+ A A A
Sbjct: 13 TVYVGNLDERFGEALMWEMMTQMGPVVNLHMPMDRVSRTHQGYGFVEFDTPESADYAARA 72
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSC-KV 147
LN + + GK IR+ + D +F+ NLD +D K L DTF+ FG +++ V
Sbjct: 73 LNGIRVFGKVIRVNKASADKQKTAEIGAELFVNNLDPQVDEKILFDTFSRFGQLVTPPNV 132
Query: 148 AIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQN 201
D+N SKGYGFV F++ EA+ A +NG + KQ+ V ++ + +++
Sbjct: 133 VRDANNISKGYGFVNFDSFEASDTARDTMNGQYLLSKQITVEYAYKKDGKGERH 186
Score = 185 (70.2 bits), Expect = 8.3e-14, Sum P(2) = 8.3e-14
Identities = 51/179 (28%), Positives = 89/179 (49%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQS-KGYGFVQFENEEAAQNAIKML 176
V++ NLD + + G V++ + +D ++ +GYGFV+F+ E+A A + L
Sbjct: 14 VYVGNLDERFGEALMWEMMTQMGPVVNLHMPMDRVSRTHQGYGFVEFDTPESADYAARAL 73
Query: 177 NGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGT-ITS 235
NG+ + K + V + +Q + ++VNNL V ++ L F FG +T
Sbjct: 74 NGIRVFGKVIRVN----KASADKQKTAEIGAELFVNNLDPQVDEKILFDTFSRFGQLVTP 129
Query: 236 AIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDK---VWYVGRAQKRAEREAD 291
V++D++ S+ +GFVNF S +A+ A + +NG K V Y + + ER D
Sbjct: 130 PNVVRDANNISKGYGFVNFDSFEASDTARDTMNGQYLLSKQITVEYAYKKDGKGERHGD 188
Score = 177 (67.4 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 74/267 (27%), Positives = 117/267 (43%)
Query: 205 KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKS-RCFGFVNFQSPDAAAAA 263
K VYV NL E + + ++ G + + + D ++ + +GFV F +P++A A
Sbjct: 10 KEATVYVGNLDERFGEALMWEMMTQMGPVVNLHMPMDRVSRTHQGYGFVEFDTPESADYA 69
Query: 264 VEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIND 323
LNG KV V +A ++ A++ GA L++ NLD +++
Sbjct: 70 ARALNGIRVFGKVIRVNKASADKQKTAEI----------------GAELFVNNLDPQVDE 113
Query: 324 EKLKELFSEFGT-ITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYV 382
+ L + FS FG +T V+ D + SKG GF F E + A + MNG+ + K + V
Sbjct: 114 KILFDTFSRFGQLVTPPNVVRDANNISKGYGFVNFDSFEASDTARDTMNGQYLLSKQITV 173
Query: 383 AVAQRKEERKARL--QAQFAQIRAPG---GMSPLASGIP-GYHHGAPRLGPQQLYYGQGT 436
A +K+ + R +A+ ++ A G + P +P Y AP P G T
Sbjct: 174 EYAYKKDGKGERHGDEAE-RKLAAEGKKHNIVPEQQPLPPAYLMSAPASTPA----G-AT 227
Query: 437 PGLMPPQAAGYGFQQQVFPGLRPGGPN 463
P AAG PG P PN
Sbjct: 228 PATPTGPAAGPP------PGFDPAAPN 248
Score = 107 (42.7 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 25/96 (26%), Positives = 50/96 (52%)
Query: 304 YEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFS-KGSGFAAFSMPEE 362
+E+ K A +Y+ NLD+ + + E+ ++ G + + + +D+ + +G GF F PE
Sbjct: 6 WEQNKEATVYVGNLDERFGEALMWEMMTQMGPVVNLHMPMDRVSRTHQGYGFVEFDTPES 65
Query: 363 ATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQ 398
A A +NG + K + V A +++ A + A+
Sbjct: 66 ADYAARALNGIRVFGKVIRVNKASADKQKTAEIGAE 101
Score = 67 (28.6 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 26/61 (42%), Positives = 28/61 (45%)
Query: 405 PGGMSPLASGIP-GYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFPG-LRPGGP 462
P M P A GIP GY PR GP G G MPPQAAG G + G P P
Sbjct: 263 PPPMVPPA-GIPAGYGAPPPRGGPP------GFGGHMPPQAAGPGRHMGMMGGHALPPAP 315
Query: 463 N 463
+
Sbjct: 316 S 316
Score = 48 (22.0 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 21/65 (32%), Positives = 23/65 (35%)
Query: 407 GMSPLASGIPGYHHGAPRLGPQQLYYGQGTP--GLMPPQAAGYGFQQQVFP--GLRPGGP 462
GM P P G P QQ + G G P G PP A P G+ PG P
Sbjct: 336 GMPPSGFRGPPAPMGLPPPPGQQPHPGFGAPPPGFAPPNGAPMPMPGGYMPPPGM-PGPP 394
Query: 463 NYIMP 467
P
Sbjct: 395 GAAAP 399
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 222 (83.2 bits), Expect = 2.0e-23, Sum P(2) = 2.0e-23
Identities = 53/165 (32%), Positives = 86/165 (52%)
Query: 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQ-----------SKRSSLGYAYV 74
G +L V L QN+ + +L LFS + +V S ++ RD+ SK SLGY +V
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFV 77
Query: 75 NYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCD 134
NY N +DA A LN + + K I++ ++ PS N++I L ++ K + D
Sbjct: 78 NYLNAKDAERAINTLNGLRLQSKTIKVSFAR--PSSESIKDANLYISGLPRTMTQKDVED 135
Query: 135 TFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKMLNG 178
F FG +++ +V +D + G S+G F++F+ A+ AI NG
Sbjct: 136 MFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 180
Score = 176 (67.0 bits), Expect = 4.4e-17, Sum P(2) = 4.4e-17
Identities = 55/179 (30%), Positives = 82/179 (45%)
Query: 105 HRDPSIRKS-GYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAID------------S 151
H D R G N+ + L ++ L F++ G V S K+ D S
Sbjct: 8 HMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLS 67
Query: 152 NGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYV 211
G S GYGFV + N + A+ AI LNG+ + K + V F R S K N+Y+
Sbjct: 68 KGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVS-FARPSSE-----SIKDANLYI 121
Query: 212 NNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
+ L T+T +D++ +F FG I ++ V+ D + G SR F+ F A A+ NG
Sbjct: 122 SGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 180
Score = 152 (58.6 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 55/198 (27%), Positives = 93/198 (46%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEK 266
TN+ VN L + +T ++L+ +F G + SA +++D F+ ++ +
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDK--------VAGFEMRSSSLSKGHS 71
Query: 267 LN-GTTNNDKVWYVGRAQKRAEREAD----LRAKFEQERIS----RYEKLKGANLYLKNL 317
L G N Y+ K AER + LR + + ++S E +K ANLY+ L
Sbjct: 72 LGYGFVN-----YLNA--KDAERAINTLNGLRLQSKTIKVSFARPSSESIKDANLYISGL 124
Query: 318 DDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEMNG-KMI 375
++ + ++++F FG I + +V+VDQ G S+G F F EA A+ NG K
Sbjct: 125 PRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPP 184
Query: 376 GR-KPLYVAVAQRKEERK 392
G +P+ V A + K
Sbjct: 185 GSSEPITVKFAANPNQNK 202
Score = 121 (47.7 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 35/103 (33%), Positives = 47/103 (45%)
Query: 87 EALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCK 146
+ F P+ + + S S SG+ +F+ NL D L F FG V + K
Sbjct: 227 QRFRFSPMGVDHMSSISSVNVASSATSGWC-IFVYNLGQDADEGILWQMFGPFGAVTNVK 285
Query: 147 VAIDSN-GQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYV 188
V D N + KG+GFV N E A AI LNG + DK + V
Sbjct: 286 VIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQV 328
Score = 109 (43.4 bits), Expect = 2.0e-23, Sum P(2) = 2.0e-23
Identities = 28/83 (33%), Positives = 45/83 (54%)
Query: 201 NVSPKFTN---VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQS 256
NV+ T+ ++V NL + + L ++FG FG +T+ V++D + K + FGFV +
Sbjct: 246 NVASSATSGWCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTN 305
Query: 257 PDAAAAAVEKLNGTTNNDKVWYV 279
+ AA A+ LNG DK V
Sbjct: 306 YEEAAMAIASLNGYRLGDKTLQV 328
Score = 104 (41.7 bits), Expect = 6.6e-23, Sum P(2) = 6.6e-23
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L ++F FG +T+ KV+ D + KG GF + EEA A+ +
Sbjct: 257 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 316
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G K L V+ K +
Sbjct: 317 NGYRLGDKTLQVSFKTSKSHK 337
Score = 38 (18.4 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 59 VCRDQSKRSSLGYAYVNYSNPQD 81
VCRD R++L Y+ + QD
Sbjct: 12 VCRDDIGRTNLIVNYLPQNMTQD 34
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 270 (100.1 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 59/179 (32%), Positives = 102/179 (56%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ ++YVG L++ V+E L++LF Q VV+ + +D+ GY +V + + +DA A
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 87 EALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSC- 145
+ +N + + GKPIR+ + G N+FI NLD ID K L DTF+AFG +L
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQTP 130
Query: 146 KVAIDSN-GQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVS 203
K+ D + G SKGY F+ F + +A+ AI+ +NG + ++ + V ++ + +++ S
Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGS 189
Score = 197 (74.4 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 51/165 (30%), Positives = 85/165 (51%)
Query: 108 PSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENE 166
P ++ V++ LD + L + F G V++ + D GQ +GYGFV+F +E
Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 167 EAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKI 226
E A AIK++N + + K + V + +N+ N+++ NL + ++ L
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVN----KASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDT 119
Query: 227 FGHFGTITSAI-VMKDSD-GKSRCFGFVNFQSPDAAAAAVEKLNG 269
F FG I +M+D D G S+ + F+NF S DA+ AA+E +NG
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG 164
Score = 143 (55.4 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 52/168 (30%), Positives = 79/168 (47%)
Query: 309 GANLYLKNLDDSINDEKLKELFSEFGTITSC-KVMVDQH-GFSKGSGFAAFSMPEEATRA 366
GAN+++ NLD I+++ L + FS FG I K+M D G SKG F F+ + + A
Sbjct: 99 GANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAA 158
Query: 367 LNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRAPGGMSPLASGIPGYHHGA---- 422
+ MNG+ + +P+ V+ A +K+ + R A+ R +PL+ + A
Sbjct: 159 IEAMNGQYLCNRPITVSYAFKKDSKGER-HGSAAE-RLLAAQNPLSQADRPHQLFADAPP 216
Query: 423 PRLGPQQLYYGQGTPGLMPPQAAGYG-FQQQVFP--GLRPGGPNYIMP 467
P P + G+ GL PP G F V P L PG P + P
Sbjct: 217 PPSAPNPVVSSLGS-GLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPP 263
Score = 62 (26.9 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 25/71 (35%), Positives = 31/71 (43%)
Query: 403 RAPGGM---SPLASGIP--GYHHGAP--RLGPQQLYYGQGTPGLMPPQA-AG------YG 448
R P GM P G+P G G+P GP + +G P LMPP G YG
Sbjct: 336 RPPPGMPHPGPPPMGLPPRGPPFGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYG 395
Query: 449 FQQQVFPGLRP 459
+Q+ P RP
Sbjct: 396 YQRGPLPPPRP 406
Score = 57 (25.1 bits), Expect = 7.9e-23, Sum P(2) = 7.9e-23
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 437 PGLMPPQAAGYGFQQQVFPGL-RPG-GPNYIMPYHLQRQVHPG 477
P MPP A G+G PG PG G ++ P+ HPG
Sbjct: 263 PPPMPPGAGGHGPPSAGTPGAGHPGHGHSHPHPFPPSGMPHPG 305
Score = 54 (24.1 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
Identities = 26/79 (32%), Positives = 32/79 (40%)
Query: 396 QAQFAQIRAPGGMSPLASGIPGYH-HGAPRLGPQQLYYGQGTPGLMPPQAAGYGFQQQVF 454
Q Q A P G+ +G PG PR P + G GL PP+ +G
Sbjct: 308 QMQLAH-HGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGL-PPRGPPFG-SPMGH 364
Query: 455 PGLRP--G--GPNYIMPYH 469
PG P G GP +MP H
Sbjct: 365 PGPMPPHGMRGPPPLMPPH 383
Score = 49 (22.3 bits), Expect = 5.4e-22, Sum P(2) = 5.4e-22
Identities = 21/74 (28%), Positives = 26/74 (35%)
Query: 405 PGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRP-GGPN 463
P +P +G PG+ H P P G PG+ Q A +G P P G
Sbjct: 276 PSAGTP-GAGHPGHGHSHPHPFPPS---GMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGG 331
Query: 464 YIMPYHLQRQVHPG 477
P HPG
Sbjct: 332 QPPPRPPPGMPHPG 345
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 270 (100.1 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
Identities = 59/179 (32%), Positives = 102/179 (56%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ ++YVG L++ V+E L++LF Q VV+ + +D+ GY +V + + +DA A
Sbjct: 12 DAAVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 87 EALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSC- 145
+ +N + + GKPIR+ + G N+FI NLD ID K L DTF+AFG +L
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQTP 130
Query: 146 KVAIDSN-GQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVS 203
K+ D + G SKGY F+ F + +A+ AI+ +NG + ++ + V ++ + +++ S
Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGS 189
Score = 196 (74.1 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
Identities = 50/155 (32%), Positives = 82/155 (52%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKML 176
V++ LD + L + F G V++ + D GQ +GYGFV+F +EE A AIK++
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 177 NGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSA 236
N + + K + V + +N+ N+++ NL + ++ L F FG I
Sbjct: 75 NMIKLYGKPIRVN----KASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQT 129
Query: 237 I-VMKDSD-GKSRCFGFVNFQSPDAAAAAVEKLNG 269
+M+D D G S+ + F+NF S DA+ AA+E +NG
Sbjct: 130 PKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG 164
Score = 149 (57.5 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 53/177 (29%), Positives = 81/177 (45%)
Query: 309 GANLYLKNLDDSINDEKLKELFSEFGTITSC-KVMVDQH-GFSKGSGFAAFSMPEEATRA 366
GAN+++ NLD I+++ L + FS FG I K+M D G SKG F F+ + + A
Sbjct: 99 GANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAA 158
Query: 367 LNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRAPGGMSPLASGIPGYHHGAPRLG 426
+ MNG+ + +P+ V+ A +K+ + R A+ R +PL+ A R
Sbjct: 159 IEAMNGQYLCNRPITVSYAFKKDSKGER-HGSAAE-RLLAAQNPLSQ--------ADR-- 206
Query: 427 PQQLYYGQGTPGLMP-PQAAGYGFQQQVFPGLRPGGPNYIMPYHLQRQVHPGQRTGV 482
P QL+ P MP P G + PG+ P P P + PG G+
Sbjct: 207 PHQLFADAPPPPSMPTPVMTALGAAMPI-PGMPP--PGAFPPVPPPGTMPPGMPPGM 260
Score = 57 (25.1 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
Identities = 19/59 (32%), Positives = 26/59 (44%)
Query: 405 PGGMSPLASGIPGYHHGAPRLGPQQLYYG-QGTPGLMPPQAAGYGFQQQVFPGLRPGGP 462
P M P G+P P +GP ++ G +G P MPP G G + G + G P
Sbjct: 325 PPQMPPPPMGVPPRGPFGPPMGPP-MHPGMRGPPPPMPPPGYGAGPPRPPPFGFQRGPP 382
Score = 53 (23.7 bits), Expect = 7.2e-23, Sum P(2) = 7.2e-23
Identities = 24/76 (31%), Positives = 31/76 (40%)
Query: 405 PGGMSPLASGIPGYHHGAPRLGPQQLYYGQ-GTPGLMPPQAAGYGFQQQVFPGLRPGGPN 463
P GM P G+P H P GP + G PG P+A G+ P GP
Sbjct: 286 PAGMHP--PGMP--HMPMPPTGPPGMVPPPPGPPGSNQPRAPPPPQMPPPPMGVPPRGP- 340
Query: 464 YIMPYHLQRQVHPGQR 479
+ P + +HPG R
Sbjct: 341 FGPP--MGPPMHPGMR 354
Score = 47 (21.6 bits), Expect = 3.1e-22, Sum P(2) = 3.1e-22
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 416 PGYHHGAPRLGPQQLYYGQGTPGLMPPQ 443
PGY G PR P + +G P MPP+
Sbjct: 363 PGYGAGPPR--PPPFGFQRGPP--MPPR 386
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 270 (100.1 bits), Expect = 3.0e-23, Sum P(2) = 3.0e-23
Identities = 59/179 (32%), Positives = 102/179 (56%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ ++YVG L++ V+E L++LF Q VV+ + +D+ GY +V + + +DA A
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 87 EALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSC- 145
+ +N + + GKPIR+ + G N+FI NLD ID K L DTF+AFG +L
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQTP 130
Query: 146 KVAIDSN-GQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVS 203
K+ D + G SKGY F+ F + +A+ AI+ +NG + ++ + V ++ + +++ S
Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGS 189
Score = 197 (74.4 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 51/165 (30%), Positives = 85/165 (51%)
Query: 108 PSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENE 166
P ++ V++ LD + L + F G V++ + D GQ +GYGFV+F +E
Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 167 EAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKI 226
E A AIK++N + + K + V + +N+ N+++ NL + ++ L
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVN----KASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDT 119
Query: 227 FGHFGTITSAI-VMKDSD-GKSRCFGFVNFQSPDAAAAAVEKLNG 269
F FG I +M+D D G S+ + F+NF S DA+ AA+E +NG
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG 164
Score = 143 (55.4 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 52/168 (30%), Positives = 79/168 (47%)
Query: 309 GANLYLKNLDDSINDEKLKELFSEFGTITSC-KVMVDQH-GFSKGSGFAAFSMPEEATRA 366
GAN+++ NLD I+++ L + FS FG I K+M D G SKG F F+ + + A
Sbjct: 99 GANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAA 158
Query: 367 LNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRAPGGMSPLASGIPGYHHGA---- 422
+ MNG+ + +P+ V+ A +K+ + R A+ R +PL+ + A
Sbjct: 159 IEAMNGQYLCNRPITVSYAFKKDSKGER-HGSAAE-RLLAAQNPLSQADRPHQLFADAPP 216
Query: 423 PRLGPQQLYYGQGTPGLMPPQAAGYG-FQQQVFP--GLRPGGPNYIMP 467
P P + G+ GL PP G F V P L PG P + P
Sbjct: 217 PPSAPNPVVSSLGS-GLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPP 263
Score = 61 (26.5 bits), Expect = 3.0e-23, Sum P(2) = 3.0e-23
Identities = 25/71 (35%), Positives = 31/71 (43%)
Query: 403 RAPGGM---SPLASGIP--GYHHGAP--RLGPQQLYYGQGTPGLMPPQA-AG------YG 448
R P GM P G+P G G+P GP + +G P LMPP G YG
Sbjct: 336 RPPPGMPHPGPPPMGMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYG 395
Query: 449 FQQQVFPGLRP 459
+Q+ P RP
Sbjct: 396 YQRGPLPPPRP 406
Score = 56 (24.8 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 24/78 (30%), Positives = 31/78 (39%)
Query: 396 QAQFAQIRAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFP 455
Q Q A P G+ +G PG P P + + P MPP+ +G P
Sbjct: 308 QMQLAH-HGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPFG-SPMGHP 365
Query: 456 GLRP--G--GPNYIMPYH 469
G P G GP +MP H
Sbjct: 366 GPMPPHGMRGPPPLMPPH 383
Score = 54 (24.1 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 437 PGLMPPQAAGYGFQQQVFPGL-RPG-GPNYIMPYHLQRQVHPG 477
P MPP A G+G PG PG G ++ P+ HPG
Sbjct: 263 PPPMPPGAGGHGPPAAGTPGAGHPGHGHSHPHPFPPGGMPHPG 305
Score = 50 (22.7 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
Identities = 23/75 (30%), Positives = 26/75 (34%)
Query: 406 GGMSPLASGIPGYHH-GAPRLGPQQLYYG-QGTPGLMPPQAAGYGFQQQVFPGLRP-GGP 462
GG P A+G PG H G P G PG+ Q A +G P P G
Sbjct: 271 GGHGPPAAGTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSG 330
Query: 463 NYIMPYHLQRQVHPG 477
P HPG
Sbjct: 331 GQPPPRPPPGMPHPG 345
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 270 (100.1 bits), Expect = 3.0e-23, Sum P(2) = 3.0e-23
Identities = 59/179 (32%), Positives = 102/179 (56%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ ++YVG L++ V+E L++LF Q VV+ + +D+ GY +V + + +DA A
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 87 EALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSC- 145
+ +N + + GKPIR+ + G N+FI NLD ID K L DTF+AFG +L
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQTP 130
Query: 146 KVAIDSN-GQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVS 203
K+ D + G SKGY F+ F + +A+ AI+ +NG + ++ + V ++ + +++ S
Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGS 189
Score = 197 (74.4 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 51/165 (30%), Positives = 85/165 (51%)
Query: 108 PSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENE 166
P ++ V++ LD + L + F G V++ + D GQ +GYGFV+F +E
Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 167 EAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKI 226
E A AIK++N + + K + V + +N+ N+++ NL + ++ L
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVN----KASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDT 119
Query: 227 FGHFGTITSAI-VMKDSD-GKSRCFGFVNFQSPDAAAAAVEKLNG 269
F FG I +M+D D G S+ + F+NF S DA+ AA+E +NG
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG 164
Score = 143 (55.4 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 52/168 (30%), Positives = 79/168 (47%)
Query: 309 GANLYLKNLDDSINDEKLKELFSEFGTITSC-KVMVDQH-GFSKGSGFAAFSMPEEATRA 366
GAN+++ NLD I+++ L + FS FG I K+M D G SKG F F+ + + A
Sbjct: 99 GANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAA 158
Query: 367 LNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRAPGGMSPLASGIPGYHHGA---- 422
+ MNG+ + +P+ V+ A +K+ + R A+ R +PL+ + A
Sbjct: 159 IEAMNGQYLCNRPITVSYAFKKDSKGER-HGSAAE-RLLAAQNPLSQADRPHQLFADAPP 216
Query: 423 PRLGPQQLYYGQGTPGLMPPQAAGYG-FQQQVFP--GLRPGGPNYIMP 467
P P + G+ GL PP G F V P L PG P + P
Sbjct: 217 PPSAPNPVVSSLGS-GLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPP 263
Score = 61 (26.5 bits), Expect = 3.0e-23, Sum P(2) = 3.0e-23
Identities = 25/71 (35%), Positives = 31/71 (43%)
Query: 403 RAPGGM---SPLASGIP--GYHHGAP--RLGPQQLYYGQGTPGLMPPQA-AG------YG 448
R P GM P G+P G G+P GP + +G P LMPP G YG
Sbjct: 336 RPPPGMPHPGPPPMGMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYG 395
Query: 449 FQQQVFPGLRP 459
+Q+ P RP
Sbjct: 396 YQRGPLPPPRP 406
Score = 56 (24.8 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 24/78 (30%), Positives = 31/78 (39%)
Query: 396 QAQFAQIRAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFP 455
Q Q A P G+ +G PG P P + + P MPP+ +G P
Sbjct: 308 QMQLAH-HGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPFG-SPMGHP 365
Query: 456 GLRP--G--GPNYIMPYH 469
G P G GP +MP H
Sbjct: 366 GPMPPHGMRGPPPLMPPH 383
Score = 54 (24.1 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 437 PGLMPPQAAGYGFQQQVFPGL-RPG-GPNYIMPYHLQRQVHPG 477
P MPP A G+G PG PG G ++ P+ HPG
Sbjct: 263 PPPMPPGAGGHGPPAAGTPGAGHPGHGHSHPHPFPPGGMPHPG 305
Score = 50 (22.7 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
Identities = 23/75 (30%), Positives = 26/75 (34%)
Query: 406 GGMSPLASGIPGYHH-GAPRLGPQQLYYG-QGTPGLMPPQAAGYGFQQQVFPGLRP-GGP 462
GG P A+G PG H G P G PG+ Q A +G P P G
Sbjct: 271 GGHGPPAAGTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSG 330
Query: 463 NYIMPYHLQRQVHPG 477
P HPG
Sbjct: 331 GQPPPRPPPGMPHPG 345
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 270 (100.1 bits), Expect = 3.0e-23, Sum P(2) = 3.0e-23
Identities = 59/179 (32%), Positives = 102/179 (56%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ ++YVG L++ V+E L++LF Q VV+ + +D+ GY +V + + +DA A
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 87 EALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSC- 145
+ +N + + GKPIR+ + G N+FI NLD ID K L DTF+AFG +L
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQTP 130
Query: 146 KVAIDSN-GQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVS 203
K+ D + G SKGY F+ F + +A+ AI+ +NG + ++ + V ++ + +++ S
Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGS 189
Score = 197 (74.4 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 51/165 (30%), Positives = 85/165 (51%)
Query: 108 PSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENE 166
P ++ V++ LD + L + F G V++ + D GQ +GYGFV+F +E
Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 167 EAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKI 226
E A AIK++N + + K + V + +N+ N+++ NL + ++ L
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVN----KASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDT 119
Query: 227 FGHFGTITSAI-VMKDSD-GKSRCFGFVNFQSPDAAAAAVEKLNG 269
F FG I +M+D D G S+ + F+NF S DA+ AA+E +NG
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG 164
Score = 143 (55.4 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 52/168 (30%), Positives = 79/168 (47%)
Query: 309 GANLYLKNLDDSINDEKLKELFSEFGTITSC-KVMVDQH-GFSKGSGFAAFSMPEEATRA 366
GAN+++ NLD I+++ L + FS FG I K+M D G SKG F F+ + + A
Sbjct: 99 GANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAA 158
Query: 367 LNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRAPGGMSPLASGIPGYHHGA---- 422
+ MNG+ + +P+ V+ A +K+ + R A+ R +PL+ + A
Sbjct: 159 IEAMNGQYLCNRPITVSYAFKKDSKGER-HGSAAE-RLLAAQNPLSQADRPHQLFADAPP 216
Query: 423 PRLGPQQLYYGQGTPGLMPPQAAGYG-FQQQVFP--GLRPGGPNYIMP 467
P P + G+ GL PP G F V P L PG P + P
Sbjct: 217 PPSAPNPVVSSLGS-GLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPP 263
Score = 61 (26.5 bits), Expect = 3.0e-23, Sum P(2) = 3.0e-23
Identities = 25/71 (35%), Positives = 31/71 (43%)
Query: 403 RAPGGM---SPLASGIP--GYHHGAP--RLGPQQLYYGQGTPGLMPPQA-AG------YG 448
R P GM P G+P G G+P GP + +G P LMPP G YG
Sbjct: 336 RPPPGMPHPGPPPMGMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYG 395
Query: 449 FQQQVFPGLRP 459
+Q+ P RP
Sbjct: 396 YQRGPLPPPRP 406
Score = 56 (24.8 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 24/78 (30%), Positives = 31/78 (39%)
Query: 396 QAQFAQIRAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFP 455
Q Q A P G+ +G PG P P + + P MPP+ +G P
Sbjct: 308 QMQLAH-HGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPFG-SPMGHP 365
Query: 456 GLRP--G--GPNYIMPYH 469
G P G GP +MP H
Sbjct: 366 GPMPPHGMRGPPPLMPPH 383
Score = 55 (24.4 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 437 PGLMPPQAAGYGFQQQVFPGL-RPG-GPNYIMPYHLQRQVHPG 477
P MPP A G+G PG PG G ++ P+ HPG
Sbjct: 263 PPPMPPGAGGHGPPSAGTPGAGHPGHGHSHPHPFPPGGMPHPG 305
Score = 47 (21.6 bits), Expect = 8.7e-22, Sum P(2) = 8.7e-22
Identities = 22/75 (29%), Positives = 26/75 (34%)
Query: 406 GGMSPLASGIPGYHH-GAPRLGPQQLYYG-QGTPGLMPPQAAGYGFQQQVFPGLRP-GGP 462
GG P ++G PG H G P G PG+ Q A +G P P G
Sbjct: 271 GGHGPPSAGTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSG 330
Query: 463 NYIMPYHLQRQVHPG 477
P HPG
Sbjct: 331 GQPPPRPPPGMPHPG 345
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 270 (100.1 bits), Expect = 3.0e-23, Sum P(2) = 3.0e-23
Identities = 59/179 (32%), Positives = 102/179 (56%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ ++YVG L++ V+E L++LF Q VV+ + +D+ GY +V + + +DA A
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 87 EALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSC- 145
+ +N + + GKPIR+ + G N+FI NLD ID K L DTF+AFG +L
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQTP 130
Query: 146 KVAIDSN-GQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVS 203
K+ D + G SKGY F+ F + +A+ AI+ +NG + ++ + V ++ + +++ S
Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGS 189
Score = 197 (74.4 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 51/165 (30%), Positives = 85/165 (51%)
Query: 108 PSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENE 166
P ++ V++ LD + L + F G V++ + D GQ +GYGFV+F +E
Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 167 EAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKI 226
E A AIK++N + + K + V + +N+ N+++ NL + ++ L
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVN----KASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDT 119
Query: 227 FGHFGTITSAI-VMKDSD-GKSRCFGFVNFQSPDAAAAAVEKLNG 269
F FG I +M+D D G S+ + F+NF S DA+ AA+E +NG
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG 164
Score = 143 (55.4 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 52/168 (30%), Positives = 79/168 (47%)
Query: 309 GANLYLKNLDDSINDEKLKELFSEFGTITSC-KVMVDQH-GFSKGSGFAAFSMPEEATRA 366
GAN+++ NLD I+++ L + FS FG I K+M D G SKG F F+ + + A
Sbjct: 99 GANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAA 158
Query: 367 LNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRAPGGMSPLASGIPGYHHGA---- 422
+ MNG+ + +P+ V+ A +K+ + R A+ R +PL+ + A
Sbjct: 159 IEAMNGQYLCNRPITVSYAFKKDSKGER-HGSAAE-RLLAAQNPLSQADRPHQLFADAPP 216
Query: 423 PRLGPQQLYYGQGTPGLMPPQAAGYG-FQQQVFP--GLRPGGPNYIMP 467
P P + G+ GL PP G F V P L PG P + P
Sbjct: 217 PPSAPNPVVSSLGS-GLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPP 263
Score = 61 (26.5 bits), Expect = 3.0e-23, Sum P(2) = 3.0e-23
Identities = 25/71 (35%), Positives = 31/71 (43%)
Query: 403 RAPGGM---SPLASGIP--GYHHGAP--RLGPQQLYYGQGTPGLMPPQA-AG------YG 448
R P GM P G+P G G+P GP + +G P LMPP G YG
Sbjct: 336 RPPPGMPHPGPPPMGMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYG 395
Query: 449 FQQQVFPGLRP 459
+Q+ P RP
Sbjct: 396 YQRGPLPPPRP 406
Score = 56 (24.8 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 24/78 (30%), Positives = 31/78 (39%)
Query: 396 QAQFAQIRAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFP 455
Q Q A P G+ +G PG P P + + P MPP+ +G P
Sbjct: 308 QMQLAH-HGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPFG-SPMGHP 365
Query: 456 GLRP--G--GPNYIMPYH 469
G P G GP +MP H
Sbjct: 366 GPMPPHGMRGPPPLMPPH 383
Score = 49 (22.3 bits), Expect = 5.4e-22, Sum P(2) = 5.4e-22
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 437 PGLMPPQAAGYGFQQQVFPGL-RPG-GPNYIMPYHLQRQVHPG 477
P MPP A G+G PG P G ++ P+ HPG
Sbjct: 263 PPPMPPGAGGHGPPSAGTPGAGHPAHGHSHPHPFPPGGMPHPG 305
Score = 45 (20.9 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 21/75 (28%), Positives = 26/75 (34%)
Query: 406 GGMSPLASGIPGYHHGAPRLGPQQLYY--GQGTPGLMPPQAAGYGFQQQVFPGLRP-GGP 462
GG P ++G PG H A + G PG+ Q A +G P P G
Sbjct: 271 GGHGPPSAGTPGAGHPAHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSG 330
Query: 463 NYIMPYHLQRQVHPG 477
P HPG
Sbjct: 331 GQPPPRPPPGMPHPG 345
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 270 (100.1 bits), Expect = 3.0e-23, Sum P(2) = 3.0e-23
Identities = 59/179 (32%), Positives = 102/179 (56%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ ++YVG L++ V+E L++LF Q VV+ + +D+ GY +V + + +DA A
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 87 EALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSC- 145
+ +N + + GKPIR+ + G N+FI NLD ID K L DTF+AFG +L
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQTP 130
Query: 146 KVAIDSN-GQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVS 203
K+ D + G SKGY F+ F + +A+ AI+ +NG + ++ + V ++ + +++ S
Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGS 189
Score = 197 (74.4 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 51/165 (30%), Positives = 85/165 (51%)
Query: 108 PSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENE 166
P ++ V++ LD + L + F G V++ + D GQ +GYGFV+F +E
Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 167 EAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKI 226
E A AIK++N + + K + V + +N+ N+++ NL + ++ L
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVN----KASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDT 119
Query: 227 FGHFGTITSAI-VMKDSD-GKSRCFGFVNFQSPDAAAAAVEKLNG 269
F FG I +M+D D G S+ + F+NF S DA+ AA+E +NG
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG 164
Score = 143 (55.4 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 52/168 (30%), Positives = 79/168 (47%)
Query: 309 GANLYLKNLDDSINDEKLKELFSEFGTITSC-KVMVDQH-GFSKGSGFAAFSMPEEATRA 366
GAN+++ NLD I+++ L + FS FG I K+M D G SKG F F+ + + A
Sbjct: 99 GANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAA 158
Query: 367 LNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRAPGGMSPLASGIPGYHHGA---- 422
+ MNG+ + +P+ V+ A +K+ + R A+ R +PL+ + A
Sbjct: 159 IEAMNGQYLCNRPITVSYAFKKDSKGER-HGSAAE-RLLAAQNPLSQADRPHQLFADAPP 216
Query: 423 PRLGPQQLYYGQGTPGLMPPQAAGYG-FQQQVFP--GLRPGGPNYIMP 467
P P + G+ GL PP G F V P L PG P + P
Sbjct: 217 PPSAPNPVVSSLGS-GLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPP 263
Score = 61 (26.5 bits), Expect = 3.0e-23, Sum P(2) = 3.0e-23
Identities = 25/71 (35%), Positives = 31/71 (43%)
Query: 403 RAPGGM---SPLASGIP--GYHHGAP--RLGPQQLYYGQGTPGLMPPQA-AG------YG 448
R P GM P G+P G G+P GP + +G P LMPP G YG
Sbjct: 336 RPPPGMPHPGPPPMGMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYG 395
Query: 449 FQQQVFPGLRP 459
+Q+ P RP
Sbjct: 396 YQRGPLPPPRP 406
Score = 59 (25.8 bits), Expect = 4.9e-23, Sum P(2) = 4.9e-23
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 437 PGLMPPQAAGYGFQQQVFPGL-RPG-GPNYIMPYHLQRQVHPG 477
P MPP AAG+G PG PG G ++ P+ HPG
Sbjct: 263 PPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHPFPPGGMPHPG 305
Score = 56 (24.8 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 24/78 (30%), Positives = 31/78 (39%)
Query: 396 QAQFAQIRAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFP 455
Q Q A P G+ +G PG P P + + P MPP+ +G P
Sbjct: 308 QMQLAH-HGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPFG-SPMGHP 365
Query: 456 GLRP--G--GPNYIMPYH 469
G P G GP +MP H
Sbjct: 366 GPMPPHGMRGPPPLMPPH 383
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 270 (100.1 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 75/262 (28%), Positives = 129/262 (49%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+LYVG+L ++V E+ + LFSQ+ + ++ D + Y +V + + AA+A A
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFYEHRHAASALAA 65
Query: 89 LNFMPINGKPIRIMYSHRDPSIRK--SGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCK 146
+N I GK +++ ++ S +K S + +VF+ +L I + + FA FG + +
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDAR 125
Query: 147 VAID-SNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRR----QERAQQN 201
V D + G+SKGYGFV F N+ A+NAI+ + G + +Q+ R+ + + N
Sbjct: 126 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESN 185
Query: 202 V------------SPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCF 249
SP VY + +T++ +++ F FG I V D +
Sbjct: 186 TKQLSYDDVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKG-----Y 240
Query: 250 GFVNFQSPDAAAAAVEKLNGTT 271
FV F S ++AA A+ +NGTT
Sbjct: 241 SFVRFNSHESAAHAIVSVNGTT 262
Score = 240 (89.5 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 67/264 (25%), Positives = 125/264 (47%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
+++ NL + + F+ G +CK+ +D+ G Y FV+F A +A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAASALAAMN 67
Query: 178 GMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAI 237
G I K+V V + +++ S F +V+V +L+ +T ED+K F FG I+ A
Sbjct: 68 GRKIMGKEVKVN-WATTPSSQKKDTSNHF-HVFVGDLSPEITTEDIKAAFAPFGRISDAR 125
Query: 238 VMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKV----WYVGRAQK-RAEREAD 291
V+KD + GKS+ +GFV+F + A A++++ G + W + ++ E++
Sbjct: 126 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESN 185
Query: 292 LRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKG 351
+ + + + +Y + + ++ +++ FS FG I +V D KG
Sbjct: 186 TK-QLSYDDVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KG 239
Query: 352 SGFAAFSMPEEATRALNEMNGKMI 375
F F+ E A A+ +NG I
Sbjct: 240 YSFVRFNSHESAAHAIVSVNGTTI 263
Score = 148 (57.2 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 50/186 (26%), Positives = 85/186 (45%)
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAA 263
PK +YV NL+ VT+ + ++F G + ++ D+ G + FV F AA+A
Sbjct: 6 PK--TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAASA 62
Query: 264 VEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIND 323
+ +NG K V A + ++ D F ++++ +L I
Sbjct: 63 LAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHF--------------HVFVGDLSPEITT 108
Query: 324 EKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYV 382
E +K F+ FG I+ +V+ D G SKG GF +F +A A+ +M G+ +G + +
Sbjct: 109 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 168
Query: 383 AVAQRK 388
A RK
Sbjct: 169 NWATRK 174
Score = 147 (56.8 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 45/167 (26%), Positives = 74/167 (44%)
Query: 30 LYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL 89
++VGDL + + F+ ++ RV +D + S GY +V++ N DA NA + +
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 90 NFMPINGKPIRIMYSHRDPSIRKSGY-GNVFIKNLDTSIDNKALCDTFAAFGTVLS---- 144
+ G+ IR ++ R P KS Y N + D ++ + + G V S
Sbjct: 157 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDDVVNQSSPSNCTVYCGGVTSGLTE 216
Query: 145 --CKVAIDSNGQ--------SKGYGFVQFENEEAAQNAIKMLNGMLI 181
+ GQ KGY FV+F + E+A +AI +NG I
Sbjct: 217 QLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTI 263
Score = 37 (18.1 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 431 YYGQGTPGLMPP-QAAGYGFQQ 451
Y+G+ TP ++ P Q G+ Q
Sbjct: 271 YWGKETPDMISPVQQNQIGYPQ 292
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 222 (83.2 bits), Expect = 7.2e-22, Sum P(3) = 7.2e-22
Identities = 48/161 (29%), Positives = 86/161 (53%)
Query: 21 VPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQ 80
V G +L + L Q + + ++ LF+ + ++ S ++ RD+ SLGY +VNY +
Sbjct: 35 VDIGESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREE 94
Query: 81 DAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFG 140
DA A + N + + K I++ Y+ PS + N+++ + S+ L F FG
Sbjct: 95 DALRAVSSFNGLRLQNKTIKVSYAR--PSNDQIKGSNLYVSGIPKSMTLHELESIFRPFG 152
Query: 141 TVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKMLNGML 180
+++ ++ D+ G SKG GFV+F+ ++ A AIK LNG +
Sbjct: 153 QIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSI 193
Score = 210 (79.0 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
Identities = 51/156 (32%), Positives = 83/156 (53%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+ I L + + + F + G + SCK+ D GQS GYGFV + EE A A+
Sbjct: 43 NLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSS 102
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITS 235
NG+ + +K + V + R N K +N+YV+ + +++T +L+ IF FG I +
Sbjct: 103 FNGLRLQNKTIKVS-YAR-----PSNDQIKGSNLYVSGIPKSMTLHELESIFRPFGQIIT 156
Query: 236 AIVMKDS-DGKSRCFGFVNFQSPDAAAAAVEKLNGT 270
+ ++ D+ G S+ GFV F D A A++ LNG+
Sbjct: 157 SRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGS 192
Score = 132 (51.5 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 28/87 (32%), Positives = 52/87 (59%)
Query: 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQD 81
PS L+V +L + +++ L+ LFSQ +V+V++ RD +++ GYA+V+ SN +
Sbjct: 368 PSDTAGYCLFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDLTQQCK-GYAFVSMSNYTE 426
Query: 82 AANAKEALNFMPINGKPIRIMYSHRDP 108
A NA +LN + GK +++++ P
Sbjct: 427 AYNAMLSLNGTNLAGKTLQVVFKSSTP 453
Score = 129 (50.5 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 48/169 (28%), Positives = 78/169 (46%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVE 265
TN+ +N L + +T E+++ +F G I S +++D G+S +GFVN+ + A AV
Sbjct: 42 TNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVS 101
Query: 266 KLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEK 325
NG +K V A R ++ + K +S K ++ L L E
Sbjct: 102 SFNGLRLQNKTIKVSYA-----RPSNDQIKGSNLYVSGIPK----SMTLHEL------ES 146
Query: 326 LKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKM 374
+ F + ITS + + G SKG GF F +EA A+ +NG +
Sbjct: 147 IFRPFGQI--ITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSI 193
Score = 119 (46.9 bits), Expect = 0.00067, P = 0.00067
Identities = 28/81 (34%), Positives = 41/81 (50%)
Query: 108 PSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEE 167
P +GY +F+ NL + D+ L F+ FG +++ K+ D Q KGY FV N
Sbjct: 367 PPSDTAGYC-LFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDLTQQCKGYAFVSMSNYT 425
Query: 168 AAQNAIKMLNGMLINDKQVYV 188
A NA+ LNG + K + V
Sbjct: 426 EAYNAMLSLNGTNLAGKTLQV 446
Score = 104 (41.7 bits), Expect = 7.2e-22, Sum P(3) = 7.2e-22
Identities = 26/74 (35%), Positives = 38/74 (51%)
Query: 309 GANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALN 368
G L++ NL +D L +LFS+FG I + K++ D KG F + S EA A+
Sbjct: 373 GYCLFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDLTQQCKGYAFVSMSNYTEAYNAML 432
Query: 369 EMNGKMIGRKPLYV 382
+NG + K L V
Sbjct: 433 SLNGTNLAGKTLQV 446
Score = 80 (33.2 bits), Expect = 2.1e-19, Sum P(3) = 2.1e-19
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLN 268
++V NL+ D L ++F FG I + +++D + + + FV+ + A A+ LN
Sbjct: 376 LFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDLTQQCKGYAFVSMSNYTEAYNAMLSLN 435
Query: 269 GT 270
GT
Sbjct: 436 GT 437
Score = 40 (19.1 bits), Expect = 7.2e-22, Sum P(3) = 7.2e-22
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 195 QERAQQNVSPKFTNVYVNNLA 215
Q+ A Q SP TN V LA
Sbjct: 330 QQHAAQTASPPATNGQVAGLA 350
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 276 (102.2 bits), Expect = 8.5e-22, P = 8.5e-22
Identities = 76/259 (29%), Positives = 133/259 (51%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+LYVG+L+ V E + LF+Q+ V +V D S YA+V +S+ A+ A +
Sbjct: 47 TLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDP---YAFVEFSDHGQASQALQT 103
Query: 89 LNFMPINGKPIRIMYS----HRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS 144
+N + + +++ ++ + I + + +VF+ +L + +DN+ L + F FG V
Sbjct: 104 MNKRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSD 163
Query: 145 CKVAIDSNG-QSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRR---QERAQQ 200
KV D+N +SKGYGFV + E A+ AI+ +NG + + + R+ QE+
Sbjct: 164 AKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSH 223
Query: 201 -----------NVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCF 249
S T+VYV N+A ++T++++++ F FG IT + K G +
Sbjct: 224 YNEKSYDEIYNQTSGDNTSVYVGNIA-SLTEDEIRQGFASFGRITEVRIFK-MQG----Y 277
Query: 250 GFVNFQSPDAAAAAVEKLN 268
FV F + DAAA A+ ++N
Sbjct: 278 AFVKFDNKDAAAKAIVQMN 296
Score = 250 (93.1 bits), Expect = 1.2e-18, P = 1.2e-18
Identities = 66/263 (25%), Positives = 136/263 (51%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
+++ NLD+++ + F G+V KV D G + Y FV+F + A A++ +N
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--GSNDPYAFVEFSDHGQASQALQTMN 105
Query: 178 GMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAI 237
L+ D+++ V V ++ + + + +V+V +L+ V ++ L++ F FG ++ A
Sbjct: 106 KRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAK 165
Query: 238 VMKDSDG-KSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRA-QKRAEREADLRAK 295
V++D++ KS+ +GFV++ + A A+E++NG + A +K ++E
Sbjct: 166 VIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYN 225
Query: 296 FEQERISRYEKLKGAN--LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSG 353
E+ Y + G N +Y+ N+ S+ ++++++ F+ FG IT ++ Q G
Sbjct: 226 -EKSYDEIYNQTSGDNTSVYVGNIA-SLTEDEIRQGFASFGRITEVRIFKMQ-----GYA 278
Query: 354 FAAFSMPEEATRALNEMNGKMIG 376
F F + A +A+ +MN + +G
Sbjct: 279 FVKFDNKDAAAKAIVQMNNQDVG 301
Score = 203 (76.5 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 53/189 (28%), Positives = 98/189 (51%)
Query: 201 NVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAA 260
N S + +YV NL TVT++ + +F G++T V+ DG + + FV F A
Sbjct: 40 NGSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVI--FDGSNDPYAFVEFSDHGQA 97
Query: 261 AAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDS 320
+ A++ +N D+ V A + +++ S+ + + ++++ +L
Sbjct: 98 SQALQTMNKRLLLDREMKVNWAVEPGQQQ------------SKIDTTRHFHVFVGDLSSE 145
Query: 321 INDEKLKELFSEFGTITSCKVMVDQHGF-SKGSGFAAFSMPEEATRALNEMNGKMIGRKP 379
++++KL+E F FG ++ KV+ D + SKG GF ++ EEA RA+ +MNG+ +GR+
Sbjct: 146 VDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRT 205
Query: 380 LYVAVAQRK 388
+ A RK
Sbjct: 206 IRTNWATRK 214
Score = 143 (55.4 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 46/169 (27%), Positives = 77/169 (45%)
Query: 30 LYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL 89
++VGDL V+ +L + F V +V RD + S GY +V+Y ++A A E +
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 90 NFMPINGKPIRIMYSHRDPSIRK--SGYGNVFIKNL--DTSIDNKALCDTFAAFGTVLSC 145
N + + IR ++ R P ++ S Y + TS DN ++ A T
Sbjct: 197 NGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIASLTEDEI 256
Query: 146 KVAIDSNGQ--------SKGYGFVQFENEEAAQNAIKMLNGMLINDKQV 186
+ S G+ +GY FV+F+N++AA AI +N + + V
Sbjct: 257 RQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLV 305
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 187 (70.9 bits), Expect = 8.7e-22, Sum P(2) = 8.7e-22
Identities = 40/157 (25%), Positives = 83/157 (52%)
Query: 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANA 85
G +++VG + ++NE + +F++ ++ + + +D+ S G A++ +S ++A NA
Sbjct: 16 GGFTVFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNA 75
Query: 86 KEALN----FMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGT 141
N F+ KP+++ YS D I K +FI L TS D + F +G
Sbjct: 76 LNTTNESGTFLENMNKPLQVKYS--DNEIEKMER-KLFIGMLGTS-DEDQIRILFGNYGI 131
Query: 142 VLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNG 178
+ + + +G+ KGYGF+++ + ++NA++ ++G
Sbjct: 132 IEDLNIVREKDGKPKGYGFIKYSTRDESENALREIDG 168
Score = 174 (66.3 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 72/297 (24%), Positives = 132/297 (44%)
Query: 192 VRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFG 250
+++Q++ Q N FT V+V ++ ++ +E + +IF FG I ++KD S+
Sbjct: 4 LQQQQQQQFNQLGGFT-VFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCA 62
Query: 251 FVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGA 310
F+ F + + A A LN T N+ ++ K L+ K+ I + E+
Sbjct: 63 FITFSTKEEADNA---LN--TTNESGTFLENMNK------PLQVKYSDNEIEKMER---- 107
Query: 311 NLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEM 370
L++ L S ++++++ LF +G I ++ ++ G KG GF +S +E+ AL E+
Sbjct: 108 KLFIGMLGTS-DEDQIRILFGNYGIIEDLNIVREKDGKPKGYGFIKYSTRDESENALREI 166
Query: 371 NGK--MIGRK-PLYVAVAQRKEERKARLQAQFAQIRAPGGMSPLASGIPGYHHGAPRLGP 427
+GK + G P+ V A + +++ +L + P +
Sbjct: 167 DGKHTLPGSNLPIIVKFADTERQKRKKLLGNQQPPQNPFNFYQQNQQQQQQQQQQQQQQN 226
Query: 428 QQ--LYYGQGTPGLMPPQAAGY-GFQQQ--VFPGLRPGGPNYIMPYHLQRQVHPGQR 479
Q +YGQ + GY G+QQQ V G+ G N Y+ Q+Q Q+
Sbjct: 227 QYQPFFYGQNSQMSQAMGNNGYRGYQQQPNVNFGMMQG--NQAFDYNQQQQQQQQQQ 281
Score = 154 (59.3 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 37/154 (24%), Positives = 79/154 (51%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQ-SKGYGFVQFENEEAAQNAIKML 176
VF+ ++ +S++ + + F FG +L + D SKG F+ F +E A NA+
Sbjct: 20 VFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNALNTT 79
Query: 177 NGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDED-LKKIFGHFGTITS 235
N + + L V+ + + + K +++ L +DED ++ +FG++G I
Sbjct: 80 NESGTFLENMNKPLQVKYSDNEIEKMERK---LFIGMLG--TSDEDQIRILFGNYGIIED 134
Query: 236 AIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
++++ DGK + +GF+ + + D + A+ +++G
Sbjct: 135 LNIVREKDGKPKGYGFIKYSTRDESENALREIDG 168
Score = 139 (54.0 bits), Expect = 8.7e-22, Sum P(2) = 8.7e-22
Identities = 28/79 (35%), Positives = 52/79 (65%)
Query: 193 RRQERAQQNVSPKFTN-VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGK-SRCFG 250
++Q++ QQ P +N +++ L T DE+LK++F +G + S+ V D + + S+CFG
Sbjct: 272 QQQQQQQQQQQPNESNDLFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFG 331
Query: 251 FVNFQSPDAAAAAVEKLNG 269
FV++ + +A AA+++LNG
Sbjct: 332 FVSYDNTQSAIAAIQELNG 350
Score = 126 (49.4 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQ-SKGYGFVQFENEEAAQNAIKM 175
++FI L + ++ L FA +G V+S KV ID N Q SK +GFV ++N ++A AI+
Sbjct: 288 DLFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFGFVSYDNTQSAIAAIQE 347
Query: 176 LNGMLINDKQVYVGLFVRRQE 196
LNG I K++ V F R ++
Sbjct: 348 LNGRAIEGKKLKVN-FKREKQ 367
Score = 124 (48.7 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
Identities = 28/94 (29%), Positives = 54/94 (57%)
Query: 297 EQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGF-SKGSGFA 355
+Q++ + + + +L++ L + DE+LK+LF+ +G + S KV +D++ SK GF
Sbjct: 274 QQQQQQQQQPNESNDLFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFGFV 333
Query: 356 AFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKE 389
++ + A A+ E+NG+ I K L V + K+
Sbjct: 334 SYDNTQSAIAAIQELNGRAIEGKKLKVNFKREKQ 367
>POMBASE|SPAC343.07 [details] [associations]
symbol:mug28 "RNA-binding protein Mug28" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0005619 "ascospore wall" evidence=IDA] [GO:0005628 "prospore
membrane" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0030437 "ascospore formation" evidence=IMP] [GO:0031321
"ascospore-type prospore assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC343.07 GO:GO:0007126 GO:GO:0005737 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005628 GO:GO:0005619 eggNOG:COG0724
GO:GO:0031321 PIR:T38656 RefSeq:NP_593427.1 HSSP:Q60900
ProteinModelPortal:Q9UT83 STRING:Q9UT83 EnsemblFungi:SPAC343.07.1
GeneID:2543165 KEGG:spo:SPAC343.07 OMA:YTHIVER OrthoDB:EOG447K4G
NextBio:20804191 Uniprot:Q9UT83
Length = 609
Score = 232 (86.7 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 62/150 (41%), Positives = 85/150 (56%)
Query: 311 NLYLKNLDDSI--NDEKLKELFSEFGTITSCKVM-VDQHGFSKGSGFAAFSMPEEATRAL 367
NL++KNLDD+I N ++L+ELFS+FG I SC + SKG GF +FS P EA +A+
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479
Query: 368 NEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRAPGGMSPLASGIPGYHHGAPRLGP 427
N +NG + G+K L+V A+++E+RK RL A F+Q P SP + IP P
Sbjct: 480 NTLNGVLFGKKRLFVNYAEKREDRKKRLSAIFSQSYPPVVPSPSLT-IP------MATEP 532
Query: 428 QQLYYGQGTPG--LMPPQAAGYGFQQQVFP 455
Q L Y Q P + Q GY +Q P
Sbjct: 533 QILEYHQEWPQPLIQSIQQHGYSDPRQTLP 562
Score = 155 (59.6 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 37/97 (38%), Positives = 58/97 (59%)
Query: 117 NVFIKNLDTSI--DNKALCDTFAAFGTVLSCKVA-IDSNGQSKGYGFVQFENEEAAQNAI 173
N+F+KNLD +I + + L + F+ FG + SC +A S SKGYGFV F + A AI
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479
Query: 174 KMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVY 210
LNG+L K+++V +R++R ++ +S F+ Y
Sbjct: 480 NTLNGVLFGKKRLFVNYAEKREDR-KKRLSAIFSQSY 515
Score = 126 (49.4 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 32/94 (34%), Positives = 49/94 (52%)
Query: 208 NVYVNNLAETVTD--EDLKKIFGHFGTITSAIVMK-DSDGKSRCFGFVNFQSPDAAAAAV 264
N++V NL + + + L+++F FG I S + S S+ +GFV+F P A A+
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479
Query: 265 EKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQ 298
LNG K +V A+KR +R+ L A F Q
Sbjct: 480 NTLNGVLFGKKRLFVNYAEKREDRKKRLSAIFSQ 513
Score = 98 (39.6 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 33/114 (28%), Positives = 54/114 (47%)
Query: 208 NVYVNNLAETVTDEDLKKIFGHFGTITSAIVM-----KDSDGKS-RCFGFVNFQSPDAAA 261
++YV NL T DL ++F FG + ++ K +D KS F F+ F++ +A
Sbjct: 21 SIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSAD 80
Query: 262 AAVEKLNGTT---NNDKVWY---VGRAQKRAEREADLRAKFEQERIS-RYEKLK 308
A+ LNG++ N KV Y V R + + E D E+ R+ K++
Sbjct: 81 NAIASLNGSSFQGNTLKVEYTHIVERYKNKLENGVDQIHHSNNEKAKIRFSKIE 134
Score = 91 (37.1 bits), Expect = 7.7e-21, Sum P(2) = 7.7e-21
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQ-----VVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
+S+YVG+L S L++LF ++S + + +S +A++ + N A
Sbjct: 20 ISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSA 79
Query: 83 ANAKEALNFMPINGKPIRIMYSH 105
NA +LN G +++ Y+H
Sbjct: 80 DNAIASLNGSSFQGNTLKVEYTH 102
Score = 75 (31.5 bits), Expect = 3.6e-19, Sum P(2) = 3.6e-19
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGT-----VLSCKVAIDSNGQSKG-YGFVQFENEEAAQ 170
++++ NL ++ + L + F FG +LS K ++ +S + F+ FEN+ +A
Sbjct: 21 SIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSAD 80
Query: 171 NAIKMLNG 178
NAI LNG
Sbjct: 81 NAIASLNG 88
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 182 (69.1 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 43/157 (27%), Positives = 81/157 (51%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ L+VG + ++ NE ++ +LF+ +A + SV + ++++ G A+V+ + ++A A
Sbjct: 2 STKLFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAI 61
Query: 87 EAL-NFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSC 145
E L N G + + D K +F+ L S + + + + F G V
Sbjct: 62 EQLHNSKKFQGVLNNLQVKYADSEQEKLA-SKLFVGMLPRSYEEEQIRELFEPHGVVEDI 120
Query: 146 KVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLIN 182
+ N +SKG GF++F+N E+A +AI LNGM ++
Sbjct: 121 CILRGPNSESKGCGFIKFDNRESALSAIATLNGMKLD 157
Score = 159 (61.0 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 52/200 (26%), Positives = 100/200 (50%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVE 265
T ++V + ++ +E++K +F + I S ++K+ + + + FV+ S + A A+E
Sbjct: 3 TKLFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIE 62
Query: 266 KLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEK 325
+L+ N+ K + G + AD EQE+++ + L++ L S +E+
Sbjct: 63 QLH---NSKK--FQGVLNNLQVKYADS----EQEKLA-------SKLFVGMLPRSYEEEQ 106
Query: 326 LKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG-KMIGR-KPLYVA 383
++ELF G + ++ + SKG GF F E A A+ +NG K+ G PL V
Sbjct: 107 IRELFEPHGVVEDICILRGPNSESKGCGFIKFDNRESALSAIATLNGMKLDGSPNPLVVK 166
Query: 384 VAQRKEERKARLQAQFAQIR 403
A ++++K + + Q QI+
Sbjct: 167 FADTEKDKKKKQKQQQIQIQ 186
Score = 147 (56.8 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 29/80 (36%), Positives = 51/80 (63%)
Query: 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRA 366
+G+NL++ N+ + +D L LF ++G + S KV VD++ G SKG GF ++ P A A
Sbjct: 401 QGSNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPASANLA 460
Query: 367 LNEMNGKMIGRKPLYVAVAQ 386
++ ++G+M+ K L V++ Q
Sbjct: 461 ISNLHGQMMAGKKLKVSLKQ 480
Score = 137 (53.3 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 31/90 (34%), Positives = 51/90 (56%)
Query: 102 MYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSN-GQSKGYGF 160
M + ++ S+ G N+F+ N+ + L F +G V+S KV +D N G SKG+GF
Sbjct: 390 MGNKKNQSVGPQG-SNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGF 448
Query: 161 VQFENEEAAQNAIKMLNGMLINDKQVYVGL 190
V ++N +A AI L+G ++ K++ V L
Sbjct: 449 VSYDNPASANLAISNLHGQMMAGKKLKVSL 478
Score = 126 (49.4 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 197 RAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSD-GKSRCFGFVNFQ 255
+ Q+V P+ +N++V N+ +D DL +F +G + SA V D + G S+ FGFV++
Sbjct: 393 KKNQSVGPQGSNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYD 452
Query: 256 SPDAAAAAVEKLNG 269
+P +A A+ L+G
Sbjct: 453 NPASANLAISNLHG 466
Score = 88 (36.0 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 30 LYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL 89
L+VG L ++ E Q+ +LF V + + R + S G ++ + N + A +A L
Sbjct: 93 LFVGMLPRSYEEEQIRELFEPHGVVEDICILRGPNSESK-GCGFIKFDNRESALSAIATL 151
Query: 90 NFMPINGKPIRIMYSHRD 107
N M ++G P ++ D
Sbjct: 152 NGMKLDGSPNPLVVKFAD 169
>FB|FBgn0260400 [details] [associations]
symbol:elav "embryonic lethal abnormal vision" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;TAS]
[GO:0015030 "Cajal body" evidence=IDA] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0016070 "RNA metabolic
process" evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0008266
"poly(U) RNA binding" evidence=IDA] [GO:0031441 "negative
regulation of mRNA 3'-end processing" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:AL022139
GO:GO:0007417 GO:GO:0009790 GO:GO:0007281 GO:GO:0015030
GO:GO:0000900 GO:GO:0031441 GO:GO:0007319 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 EMBL:M21152 EMBL:AY051822
PIR:A33130 RefSeq:NP_001014713.1 RefSeq:NP_001138142.1
RefSeq:NP_001245447.1 RefSeq:NP_525033.1 UniGene:Dm.4473
ProteinModelPortal:P16914 SMR:P16914 DIP:DIP-23700N IntAct:P16914
MINT:MINT-1597597 STRING:P16914 PaxDb:P16914 PRIDE:P16914
EnsemblMetazoa:FBtr0070091 EnsemblMetazoa:FBtr0307173 GeneID:31000
KEGG:dme:Dmel_CG4262 CTD:31000 FlyBase:FBgn0260400 eggNOG:NOG256997
InParanoid:Q7K7L9 OMA:DIGESKT PhylomeDB:P16914 GenomeRNAi:31000
NextBio:771397 Bgee:P16914 GermOnline:CG4262 Uniprot:P16914
Length = 483
Score = 211 (79.3 bits), Expect = 3.3e-21, Sum P(2) = 3.3e-21
Identities = 53/165 (32%), Positives = 86/165 (52%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQS-------------KRSSLGYAYVN 75
+L V L Q + E ++ LFS V ++ SV++ RD+S K SLGY +VN
Sbjct: 150 NLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVN 209
Query: 76 YSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDT 135
Y PQDA A LN + + K I++ ++ PS N+++ L ++ + L
Sbjct: 210 YVRPQDAEQAVNVLNGLRLQNKTIKVSFAR--PSSDAIKGANLYVSGLPKTMTQQELEAI 267
Query: 136 FAAFGTVLSCKVAIDSNG--QSKGYGFVQFENEEAAQNAIKMLNG 178
FA FG +++ ++ ++ Q+KG GF++F+ E A AI LNG
Sbjct: 268 FAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 312
Score = 189 (71.6 bits), Expect = 3.8e-17, Sum P(2) = 3.8e-17
Identities = 43/123 (34%), Positives = 72/123 (58%)
Query: 151 SNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVY 210
S GQS GYGFV + + A+ A+ +LNG+ + +K + V F R A K N+Y
Sbjct: 198 SKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVS-FARPSSDAI-----KGANLY 251
Query: 211 VNNLAETVTDEDLKKIFGHFGTITSAIVMKDS--DGKSRCFGFVNFQSPDAAAAAVEKLN 268
V+ L +T+T ++L+ IF FG I ++ +++++ D +++ GF+ F + A A+ LN
Sbjct: 252 VSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALN 311
Query: 269 GTT 271
GTT
Sbjct: 312 GTT 314
Score = 163 (62.4 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 73/278 (26%), Positives = 123/278 (44%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEK 266
TN+ VN L +T+T+++++ +F G I S +++D KS+ + ++ +P A +
Sbjct: 149 TNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRD---KSQVY--IDPLNPQAPSKGQSL 203
Query: 267 LNGTTNNDKVWYVGRAQKRAEREAD----LRAKFEQERIS----RYEKLKGANLYLKNLD 318
G N YV R Q AE+ + LR + + ++S + +KGANLY+ L
Sbjct: 204 GYGFVN-----YV-RPQD-AEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLP 256
Query: 319 DSINDEKLKELFSEFGTITSCKVMVDQHGFS--KGSGFAAFSMPEEATRALNEMNGKMIG 376
++ ++L+ +F+ FG I + +++ + + KG GF F EEATRA+ +NG
Sbjct: 257 KTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNGTTPS 316
Query: 377 R--KPLYVAVAQRKEERKARLQAQFAQIRAPGGMSP-LASGIPGYHHGAPRLGPQQLYYG 433
P+ V + +Q Q P ++P L I G H G +
Sbjct: 317 SCTDPIVVKFSNTPGSTSKIIQPQL-----PAFLNPQLVRRIGGAMHTPVNKGLARFSPM 371
Query: 434 QGTP-GLMPPQAAGYGFQQQVFPGLRPGGPNYIMPYHL 470
G +M P G PGG I Y+L
Sbjct: 372 AGDMLDVMLPNGLGAAAAAATTLASGPGGAYPIFIYNL 409
Score = 120 (47.3 bits), Expect = 0.00057, P = 0.00057
Identities = 28/72 (38%), Positives = 38/72 (52%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKML 176
+FI NL + AL F FG V S K+ D + Q KGYGFV N + A AI+ L
Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463
Query: 177 NGMLINDKQVYV 188
NG + ++ + V
Sbjct: 464 NGYTMGNRVLQV 475
Score = 113 (44.8 bits), Expect = 3.3e-21, Sum P(2) = 3.3e-21
Identities = 25/80 (31%), Positives = 45/80 (56%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
+++ NLA + L ++FG FG + S ++KD + + + +GFV+ + D AA A+ L
Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463
Query: 268 NGTTNNDKVWYVGRAQKRAE 287
NG T ++V V +A+
Sbjct: 464 NGYTMGNRVLQVSFKTNKAK 483
Score = 98 (39.6 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 23/78 (29%), Positives = 39/78 (50%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL + L +LF FG + S K++ D KG GF + + +EA A+ +
Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463
Query: 371 NGKMIGRKPLYVAVAQRK 388
NG +G + L V+ K
Sbjct: 464 NGYTMGNRVLQVSFKTNK 481
Score = 37 (18.1 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 165 NEEAA--QNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVS 203
N AA QNA + + +QV + +Q++ QQ V+
Sbjct: 34 NAAAAPVQNAAAVAAAAQLQQQQVQQAILQVQQQQTQQAVA 74
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 212 (79.7 bits), Expect = 4.3e-21, Sum P(2) = 4.3e-21
Identities = 53/162 (32%), Positives = 85/162 (52%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+ + L ++ + F +FG V SCK+ D GQS GYGFV + +E A+ AI
Sbjct: 111 NLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINA 170
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITS 235
LNG+ + +K + V + E S K N+YV+ L + +T DL+ +F +G I +
Sbjct: 171 LNGLRLQNKTIKVSIARPSSE------SIKGANLYVSGLPKNMTQSDLESLFSPYGKIIT 224
Query: 236 AIVMKDS------DGKSRCFGFVNFQSPDAAAAAVEKLNGTT 271
+ ++ D+ G S+ GF+ F A A+++LNGTT
Sbjct: 225 SRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNGTT 266
Score = 198 (74.8 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 47/156 (30%), Positives = 80/156 (51%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+L V L Q +++ ++ LF +V S ++ RD+ SLGY +VNY +DA A A
Sbjct: 111 NLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINA 170
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN + + K I++ + PS N+++ L ++ L F+ +G +++ ++
Sbjct: 171 LNGLRLQNKTIKVSIAR--PSSESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRIL 228
Query: 149 IDS------NGQSKGYGFVQFENEEAAQNAIKMLNG 178
D+ G SKG GF++F+ A AIK LNG
Sbjct: 229 CDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNG 264
Score = 159 (61.0 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 61/207 (29%), Positives = 95/207 (45%)
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAA 262
PK TN+ VN L +T++ ++++ +F FG + S +++D G+S +GFVN+ + A
Sbjct: 108 PK-TNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEK 166
Query: 263 AVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
A+ LNG +K V A+ +E K +S K N+ +L+ S+
Sbjct: 167 AINALNGLRLQNKTIKVSIARPSSES-----IKGANLYVSGLPK----NMTQSDLE-SLF 216
Query: 323 DEKLKELFSEFGTITSCKVMVDQH--GFSKGSGFAAFSMPEEATRALNEMNGKMI--GRK 378
K + S C + +H G SKG GF F EA RA+ E+NG +
Sbjct: 217 SPYGKIITSRI----LCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTE 272
Query: 379 PLYVAVAQRKEERKARLQAQFAQIRAP 405
P+ V A K +Q A I AP
Sbjct: 273 PITVKFANNPSSNKNSMQPLAAYI-AP 298
Score = 110 (43.8 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NLA + L ++FG FG + S V++D K + FGFV + + A A++ L
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422
Query: 268 NGTTNNDKVWYV 279
NG T ++V V
Sbjct: 423 NGYTLGNRVLQV 434
Score = 109 (43.4 bits), Expect = 4.3e-21, Sum P(2) = 4.3e-21
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEM 370
+++ NL + L +LF FG + S KV+ D Q KG GF + EEA A+ +
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G + L V+ K ++
Sbjct: 423 NGYTLGNRVLQVSFKTNKNKQ 443
>DICTYBASE|DDB_G0267714 [details] [associations]
symbol:sf3b4 "splicing factor 3B subunit 4"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0267714 GenomeReviews:CM000150_GR GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AAFI02000003
GO:GO:0005681 GO:GO:0003723 HSSP:Q15427 eggNOG:NOG282907 KO:K12831
RefSeq:XP_647248.1 ProteinModelPortal:Q55GD6 SMR:Q55GD6
STRING:Q55GD6 EnsemblProtists:DDB0233172 GeneID:8616053
KEGG:ddi:DDB_G0267714 OMA:ERNHEAC Uniprot:Q55GD6
Length = 359
Score = 261 (96.9 bits), Expect = 5.5e-21, P = 5.5e-21
Identities = 62/176 (35%), Positives = 102/176 (57%)
Query: 30 LYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL 89
L + DL+ V ES L +LF Q A VV V + +D+ + G AYV + + DA A + +
Sbjct: 15 LLIRDLDPMVTESLLMELFIQAAPVVKVFIPKDKLTQQHSGRAYVEFQSSSDAEYALKVM 74
Query: 90 NFMPINGKPIRIMYSHRDPSIRKSGYG-NVFIKNLDTSIDNKALCDTFAAFGTVL-SCKV 147
F+ + K I+I ++D K G N+FI NLD +D + L DTF+ FGT++ + KV
Sbjct: 75 KFVRLFNKEIKIKKENKD----KVDIGANLFIGNLDADVDERILHDTFSRFGTIIFTPKV 130
Query: 148 AIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVS 203
D NG SKG+ F+ F++ EA+ AI+ +N + +K + V + R+++ +++ S
Sbjct: 131 MRDENGVSKGFAFINFDSFEASDAAIEAMNSQFLCNKPISV-TYARKKDSNERHGS 185
Score = 168 (64.2 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 45/174 (25%), Positives = 89/174 (51%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKML 176
+ I++LD + L + F V+ + D Q G +V+F++ A+ A+K++
Sbjct: 15 LLIRDLDPMVTESLLMELFIQAAPVVKVFIPKDKLTQQHSGRAYVEFQSSSDAEYALKVM 74
Query: 177 NGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTIT-S 235
+ + +K++ + +++ + + ++ N+++ NL V + L F FGTI +
Sbjct: 75 KFVRLFNKEIKI----KKENKDKVDIG---ANLFIGNLDADVDERILHDTFSRFGTIIFT 127
Query: 236 AIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAERE 289
VM+D +G S+ F F+NF S +A+ AA+E +N +K V A+K+ E
Sbjct: 128 PKVMRDENGVSKGFAFINFDSFEASDAAIEAMNSQFLCNKPISVTYARKKDSNE 181
Score = 166 (63.5 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 66/222 (29%), Positives = 98/222 (44%)
Query: 296 FEQE-RISRYEKLK---GANLYLKNLDDSINDEKLKELFSEFGTIT-SCKVMVDQHGFSK 350
F +E +I + K K GANL++ NLD +++ L + FS FGTI + KVM D++G SK
Sbjct: 80 FNKEIKIKKENKDKVDIGANLFIGNLDADVDERILHDTFSRFGTIIFTPKVMRDENGVSK 139
Query: 351 GSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKE--ERK-ARLQAQFAQIRAPGG 407
G F F E + A+ MN + + KP+ V A++K+ ER + + A R G
Sbjct: 140 GFAFINFDSFEASDAAIEAMNSQFLCNKPISVTYARKKDSNERHGSSAERIIAASRNTGY 199
Query: 408 MSPLASGIPGYHHGAPRLG---PQQLYYGQGTPGLMPP--QAAGYGFQQQVFPG--LRPG 460
++ + PQQ Q P L PP A G QQQ+ L+
Sbjct: 200 LNQQQQQQSSSTSSTSTISTSTPQQQQQQQSQP-LPPPIVTAGGIIHQQQIQQQQQLQQQ 258
Query: 461 GPNYIMPYHLQRQVHPGQRTGVRRSGNTHQMQQPQFMRNSNQ 502
+ LQ Q Q+ ++ Q QQ Q + Q
Sbjct: 259 QQQQLQLQQLQLQQLQQQQQQQQQQQQQQQQQQQQQQQQQQQ 300
Score = 121 (47.7 bits), Expect = 0.00027, P = 0.00027
Identities = 26/87 (29%), Positives = 54/87 (62%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVV-SVRVCRDQSKRSSLGYAYVNYSNPQDAANAKE 87
+L++G+L+ +V+E L+D FS+ ++ + +V RD++ S G+A++N+ + + + A E
Sbjct: 99 NLFIGNLDADVDERILHDTFSRFGTIIFTPKVMRDENGVSK-GFAFINFDSFEASDAAIE 157
Query: 88 ALNFMPINGKPIRIMYSHRDPSIRKSG 114
A+N + KPI + Y+ + S + G
Sbjct: 158 AMNSQFLCNKPISVTYARKKDSNERHG 184
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 265 (98.3 bits), Expect = 6.1e-21, P = 6.1e-21
Identities = 74/262 (28%), Positives = 128/262 (48%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+LYVG+L ++V E+ + LFSQ+ + ++ D + Y +V + + AA A A
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAAALAA 65
Query: 89 LNFMPINGKPIRIMYSHRDPSIRK--SGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCK 146
+N I GK +++ ++ S +K S + +VF+ +L I + + FA FG + +
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDAR 125
Query: 147 VAID-SNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRR----QERAQQN 201
V D + G+SKGYGFV F N+ A+NAI+ + G + +Q+ R+ + + N
Sbjct: 126 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESN 185
Query: 202 V------------SPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCF 249
SP VY + +T++ +++ F FG I V D +
Sbjct: 186 TKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKG-----Y 240
Query: 250 GFVNFQSPDAAAAAVEKLNGTT 271
F+ F S ++AA A+ +NGTT
Sbjct: 241 SFIRFSSHESAAHAIVSVNGTT 262
Score = 251 (93.4 bits), Expect = 4.6e-19, P = 4.6e-19
Identities = 102/384 (26%), Positives = 169/384 (44%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
+++ NL + + F+ G +CK+ +D+ G Y FV+F A A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 178 GMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAI 237
G I K+V V + +++ S F +V+V +L+ +T ED+K F FG I+ A
Sbjct: 68 GRKIMGKEVKVN-WATTPSSQKKDTSNHF-HVFVGDLSPEITTEDIKAAFAPFGRISDAR 125
Query: 238 VMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKV----WYVGRAQK-RAEREAD 291
V+KD + GKS+ +GFV+F + A A++++ G + W + ++ E++
Sbjct: 126 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESN 185
Query: 292 LRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKG 351
+ E +S+ +Y + + ++ +++ FS FG I +V D KG
Sbjct: 186 TKQLSYDEVVSQSSP-GNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KG 239
Query: 352 SGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRAPGGMSPL 411
F FS E A A+ +NG I + + + +Q Q QI G P
Sbjct: 240 YSFIRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQ-NQI----GYPP- 293
Query: 412 ASGIPGYHHGAPRLGPQQLYYGQGTP-GLMPPQAAGYG--FQQQVFPGLRPG----GPNY 464
A G G +G QQ+ GQ P G P YG + QQ F + GPNY
Sbjct: 294 AYGQWGQWYG----NAQQI--GQYVPNGWQVPAYGMYGQPWSQQGFNQTQSSAPWMGPNY 347
Query: 465 IMPYHLQRQ--VHPGQRTGVRRSG 486
+P + + P Q G R +G
Sbjct: 348 SVPPPQGQNGGMLPNQPAGYRVAG 371
Score = 152 (58.6 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 51/186 (27%), Positives = 85/186 (45%)
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAA 263
PK +YV NL+ VT+ + ++F G + ++ D+ G + FV F AAAA
Sbjct: 6 PK--TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAA 62
Query: 264 VEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIND 323
+ +NG K V A + ++ D F ++++ +L I
Sbjct: 63 LAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHF--------------HVFVGDLSPEITT 108
Query: 324 EKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYV 382
E +K F+ FG I+ +V+ D G SKG GF +F +A A+ +M G+ +G + +
Sbjct: 109 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 168
Query: 383 AVAQRK 388
A RK
Sbjct: 169 NWATRK 174
Score = 143 (55.4 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 44/167 (26%), Positives = 73/167 (43%)
Query: 30 LYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL 89
++VGDL + + F+ ++ RV +D + S GY +V++ N DA NA + +
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 90 NFMPINGKPIRIMYSHRDPSIRKSGY-GNVFIKNLDTSIDNKALCDTFAAFGTVLS---- 144
+ G+ IR ++ R P KS Y N + D + + + G V S
Sbjct: 157 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTE 216
Query: 145 --CKVAIDSNGQ--------SKGYGFVQFENEEAAQNAIKMLNGMLI 181
+ GQ KGY F++F + E+A +AI +NG I
Sbjct: 217 QLMRQTFSPFGQIMEIRVFPDKGYSFIRFSSHESAAHAIVSVNGTTI 263
>FB|FBgn0000114 [details] [associations]
symbol:aret "arrest" species:7227 "Drosophila melanogaster"
[GO:0048477 "oogenesis" evidence=IMP] [GO:0007286 "spermatid
development" evidence=IMP] [GO:0007319 "negative regulation of
oskar mRNA translation" evidence=IDA;NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0030727 "germarium-derived female germ-line cyst
formation" evidence=TAS] [GO:0042078 "germ-line stem cell division"
evidence=NAS] [GO:0046011 "regulation of oskar mRNA translation"
evidence=TAS] [GO:0006378 "mRNA polyadenylation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0017148
"negative regulation of translation" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0043186 "P granule"
evidence=IDA] [GO:0005634 "nucleus" evidence=IC] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IDA] [GO:0007281
"germ cell development" evidence=IMP] [GO:0031536 "positive
regulation of exit from mitosis" evidence=IMP] [GO:0002121
"inter-male aggressive behavior" evidence=IMP] [GO:0007476
"imaginal disc-derived wing morphogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:AE014134 GO:GO:0007286
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
GO:GO:0002121 HSSP:P19339 GO:GO:0007476 GO:GO:0030727 GO:GO:0007319
GO:GO:0031536 GO:GO:0042078 GeneTree:ENSGT00560000076837
GO:GO:0000381 GO:GO:0043186 FlyBase:FBgn0000114 UniGene:Dm.4487
GeneID:34648 KEGG:dme:Dmel_CG31762 CTD:34648 KO:K02177
GenomeRNAi:34648 NextBio:789496 EMBL:BT133212 RefSeq:NP_723737.1
SMR:Q8IP90 MINT:MINT-1597685 STRING:Q8IP90
EnsemblMetazoa:FBtr0080344 EnsemblMetazoa:FBtr0331645
UCSC:CG31762-RB InParanoid:Q8IP90 OMA:ASAYMST Uniprot:Q8IP90
Length = 810
Score = 194 (73.4 bits), Expect = 6.9e-21, Sum P(2) = 6.9e-21
Identities = 57/197 (28%), Positives = 94/197 (47%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
N+ ++VG + ++++ESQL ++F + V S+ V RD++ S G +V + A A+
Sbjct: 356 NIKMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQ 415
Query: 87 EAL-NFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSC 145
+AL N +NG I D R +F+ L+ ++ + F G + C
Sbjct: 416 DALHNVKTLNGMYHPIQMKPADSENRNER--KLFVGMLNKKLNENDVRKLFEVHGAIEEC 473
Query: 146 KVAIDSNGQSKGYGFVQFENEEAAQNAIKML---NGMLINDKQVYVGLFVRRQ-ERAQQN 201
V D NGQSKG FV F + AA +AIK+ N ++ V F Q E+ Q+
Sbjct: 474 TVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSPLVVKFADTQKEKEQKK 533
Query: 202 VSPKFTNVYVNNLAETV 218
+ N++ NLA +
Sbjct: 534 IQQIQANLW--NLASNI 548
Score = 159 (61.0 bits), Expect = 4.7e-17, Sum P(2) = 4.7e-17
Identities = 57/206 (27%), Positives = 100/206 (48%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKML 176
+F+ + S+D L + F +G V S V D + G SKG FV F AA A L
Sbjct: 359 MFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQDAL 418
Query: 177 NGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSA 236
+ N K + G++ Q + + + ++V L + + + D++K+F G I
Sbjct: 419 H----NVKTLN-GMYHPIQMKPADSENRNERKLFVGMLNKKLNENDVRKLFEVHGAIEEC 473
Query: 237 IVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKF 296
V++D +G+S+ FV F + AA +A++ T + +K+ G + AD + +
Sbjct: 474 TVLRDQNGQSKGCAFVTFATKHAAISAIKV---TLSQNKIME-GCTSPLVVKFADTQKEK 529
Query: 297 EQERISRYEKLKGANLYLKNLDDSIN 322
EQ++I + + ANL+ NL +IN
Sbjct: 530 EQKKIQQIQ----ANLW--NLASNIN 549
Score = 140 (54.3 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 32/75 (42%), Positives = 44/75 (58%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQ-SKGYGFVQFENEEAAQNAIKM 175
N+FI +L + L TF FG V+S KV ID SK +GFV F+N ++AQ AIK
Sbjct: 727 NLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKA 786
Query: 176 LNGMLINDKQVYVGL 190
+NG + K++ V L
Sbjct: 787 MNGFQVGTKRLKVQL 801
Score = 136 (52.9 bits), Expect = 6.9e-21, Sum P(2) = 6.9e-21
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 199 QQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGK-SRCFGFVNFQSP 257
+Q P+ N+++ +L + TD DL F FG + SA V D S+CFGFV+F +P
Sbjct: 718 KQIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNP 777
Query: 258 DAAAAAVEKLNG 269
D+A A++ +NG
Sbjct: 778 DSAQVAIKAMNG 789
Score = 136 (52.9 bits), Expect = 6.9e-21, Sum P(2) = 6.9e-21
Identities = 30/85 (35%), Positives = 44/85 (51%)
Query: 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRA 366
+G NL++ +L D L F FG + S KV +D Q SK GF +F P+ A A
Sbjct: 724 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVA 783
Query: 367 LNEMNGKMIGRKPLYVAVAQRKEER 391
+ MNG +G K L V + + K+ +
Sbjct: 784 IKAMNGFQVGTKRLKVQLKKPKDSK 808
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 183 (69.5 bits), Expect = 7.3e-21, Sum P(3) = 7.3e-21
Identities = 38/112 (33%), Positives = 64/112 (57%)
Query: 68 SLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSI 127
SLGY +VNY +P+DA A LN + + K I++ Y+ PS N+++ L ++
Sbjct: 119 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTM 176
Query: 128 DNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKMLNG 178
K L F+ +G +++ ++ +D G S+G GF++F+ A+ AIK LNG
Sbjct: 177 TQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 228
Score = 174 (66.3 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 64/228 (28%), Positives = 110/228 (48%)
Query: 201 NVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKS--RCFG----FVN 253
N TN+ VN L + +T E+LK +FG G I S +++D G F F
Sbjct: 43 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGNQFREYFTDSSLFEK 102
Query: 254 FQSPDAAAAAVEKLNGTTNNDKVWYVGR--AQKRAEREADLRAKFEQERISRYEK----- 306
++ D+ + K + V Y+ A+K LR + + ++S Y +
Sbjct: 103 WRPLDSEVIVLGKGWQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS-YARPSSAS 161
Query: 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATR 365
++ ANLY+ L ++ ++L++LFS++G I + +++VDQ G S+G GF F EA
Sbjct: 162 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEE 221
Query: 366 ALNEMNG-KMIGR-KPLYVAVAQRKEERKARLQAQFAQI-RAPGGMSP 410
A+ +NG K G +P+ V A ++ QA +Q+ ++P P
Sbjct: 222 AIKGLNGQKPPGATEPITVKFANNPSQKTN--QAILSQLYQSPNRRYP 267
Score = 170 (64.9 bits), Expect = 2.3e-17, Sum P(3) = 2.3e-17
Identities = 44/129 (34%), Positives = 71/129 (55%)
Query: 143 LSCKVAIDSNG-QSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQN 201
L +V + G QS GYGFV + + + A+ AI LNG+ + K + V + R +
Sbjct: 106 LDSEVIVLGKGWQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS-YAR-----PSS 159
Query: 202 VSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI-TSAIVMKDSDGKSRCFGFVNFQSPDAA 260
S + N+YV+ L +T+T ++L+++F +G I TS I++ G SR GF+ F A
Sbjct: 160 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEA 219
Query: 261 AAAVEKLNG 269
A++ LNG
Sbjct: 220 EEAIKGLNG 228
Score = 117 (46.2 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 28/82 (34%), Positives = 39/82 (47%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSN-GQSKGYGFVQFENEEAAQNAIKML 176
+F+ NL D L F FG V + KV D N + KG+GFV N + A AI L
Sbjct: 319 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 378
Query: 177 NGMLINDKQVYVGLFVRRQERA 198
NG + D+ + V + +A
Sbjct: 379 NGYRLGDRVLQVSFKTNKTHKA 400
Score = 116 (45.9 bits), Expect = 7.3e-21, Sum P(3) = 7.3e-21
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NLA + L ++FG FG +T+ V++D + K + FGFV + D AA A+ L
Sbjct: 319 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 378
Query: 268 NGTTNNDKVWYV 279
NG D+V V
Sbjct: 379 NGYRLGDRVLQV 390
Score = 97 (39.2 bits), Expect = 6.5e-19, Sum P(3) = 6.5e-19
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEM 370
+++ NL ++ L ++F FG +T+ KV+ D + KG GF + +EA A+ +
Sbjct: 319 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 378
Query: 371 NGKMIGRKPLYVAVAQRKEER 391
NG +G + L V+ K +
Sbjct: 379 NGYRLGDRVLQVSFKTNKTHK 399
Score = 94 (38.1 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ +LYV L + + + +L LFSQ ++++ R+ DQ S G ++ + +A A
Sbjct: 164 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 223
Query: 87 EALNFMPING--KPIRIMYSHRDPS 109
+ LN G +PI + +++ +PS
Sbjct: 224 KGLNGQKPPGATEPITVKFAN-NPS 247
Score = 59 (25.8 bits), Expect = 7.3e-21, Sum P(3) = 7.3e-21
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQ 63
+L V L QN+ + +L LF + ++ S ++ RD+
Sbjct: 50 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDK 84
Score = 45 (20.9 bits), Expect = 6.1e-16, Sum P(3) = 6.1e-16
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAID 150
N+ + L ++ + L F + G + SCK+ D
Sbjct: 50 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRD 83
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 270 (100.1 bits), Expect = 7.7e-21, P = 7.7e-21
Identities = 78/288 (27%), Positives = 147/288 (51%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGT--VLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIK 174
+++ +L +D L +FA+ ++S KV + +NG S+GYGFV+FE+ + A ++
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 175 MLNGMLI-NDKQVYV---GLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGH- 229
NG + N Q + F ++R + N P + ++V +L+ V+D L + F
Sbjct: 163 EFNGTTMPNTDQPFRLNWASFSTGEKRLENN-GPDLS-IFVGDLSPDVSDNLLHETFSEK 220
Query: 230 FGTITSAIVMKDSD-GKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAER 288
+ ++ +A V+ D++ G+S+ +GFV F + A+ ++NG + + +G A R
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTN 280
Query: 289 EADLRAKFEQE-RISRYE-KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH 346
+ + ++R E + +++ LD S+ DE LK+ F+EFG I S K+ V
Sbjct: 281 GYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPV--- 337
Query: 347 GFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKAR 394
KG GF F A AL ++NG +IG++ + ++ + ++ R
Sbjct: 338 --GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPR 383
Score = 194 (73.4 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 62/242 (25%), Positives = 117/242 (48%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQ--VAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAAN 84
N +++VGDL ++E+ L F+ ++VSV+V R+++ S GY +V + + A
Sbjct: 100 NKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADK 159
Query: 85 AKEALN--FMPINGKPIRI---MYSHRDPSIRKSGYG-NVFIKNLDTSIDNKALCDTFAA 138
N MP +P R+ +S + + +G ++F+ +L + + L +TF+
Sbjct: 160 VLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSE 219
Query: 139 -FGTVLSCKVAIDSN-GQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQE 196
+ +V + KV +D+N G+SKGYGFV+F +E A+ +NG+ + + + +G R+
Sbjct: 220 KYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKT 279
Query: 197 RAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFG-FVNFQ 255
Q Y+ N T + D+ G + S++ +D FG V+ +
Sbjct: 280 NGYQQQGG-----YMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVK 334
Query: 256 SP 257
P
Sbjct: 335 IP 336
Score = 121 (47.7 bits), Expect = 0.00037, P = 0.00037
Identities = 53/203 (26%), Positives = 90/203 (44%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQ-VAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANA 85
++S++VGDL +V+++ L++ FS+ V + +V D + S GY +V + + + A
Sbjct: 196 DLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Query: 86 KEALNFMPINGKPIRIMYSHRDPSIRKSGY---GNVFIKNLDTSIDNKALCDTFAAFG-- 140
+N + + + +RI P + +GY G T + + T G
Sbjct: 256 MTEMNGVKCSSRAMRI--GPATPR-KTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLD 312
Query: 141 ---TVLSCKVAIDSNGQ--------SKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVG 189
T K + G+ KG GFVQF N A+ A++ LNG +I KQ V
Sbjct: 313 SSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIG-KQT-VR 370
Query: 190 LFVRRQERAQQNVSPKFTNVYVN 212
L R A + K+ N +V+
Sbjct: 371 LSWGRNP-ANKQPRDKYGNQWVD 392
>ZFIN|ZDB-GENE-040426-960 [details] [associations]
symbol:rbm28 "RNA binding motif protein 28"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-960 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000124666 HOVERGEN:HBG073213 EMBL:BX901876
IPI:IPI00499330 UniGene:Dr.78227 ProteinModelPortal:Q1LV83
SMR:Q1LV83 STRING:Q1LV83 ArrayExpress:Q1LV83 Uniprot:Q1LV83
Length = 865
Score = 216 (81.1 bits), Expect = 7.9e-21, Sum P(2) = 7.9e-21
Identities = 61/201 (30%), Positives = 92/201 (45%)
Query: 211 VNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGT 270
+ NL+ D++LK+IF FGT+ + DGK + F FV F+ A A +N
Sbjct: 128 IRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSEAEKARAAMNRK 187
Query: 271 TNNDKV----WYVGRAQKRAEREADLRAKFEQERISRYEKLKG-------ANLYLKNLDD 319
D+ W + A+ E D + E + EK KG + L ++NL
Sbjct: 188 AIRDRPVEVDWTTSNTES-ADPE-DTEEPHKAEETTSTEKFKGIRKIKLKSRLIIRNLSF 245
Query: 320 SINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKP 379
++ LK++FSEFGT+ K+ + G +G F F EA +AL MNGK I +
Sbjct: 246 KCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALTAMNGKKIKDRQ 305
Query: 380 LYVAVAQRKEERKARLQAQFA 400
+ V A K++ A A A
Sbjct: 306 VAVDWAIAKDKYLATQSASAA 326
Score = 143 (55.4 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 29/88 (32%), Positives = 54/88 (61%)
Query: 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRA 366
+ L+++ L ++ ++E L E+FSE G + +C V+ D+ +G G+ FSM ++A RA
Sbjct: 1 MPAVTLFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRA 60
Query: 367 LNEMNGKMIGRKPLYVAVAQRKEERKAR 394
L E+ K+ + ++V VA++K + K R
Sbjct: 61 LKEV--KLYDDQKIFVTVAKKKLDDKKR 86
Score = 132 (51.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 51/199 (25%), Positives = 85/199 (42%)
Query: 188 VGLFVRR--QERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGK 245
V LFVRR + + ++++ F+ + V D++ KK G FG +T ++ D
Sbjct: 4 VTLFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKE-KKCRG-FGYVTFSM----EDDA 57
Query: 246 SRCFGFVNFQSPDA--AAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISR 303
R V A +KL+ + E + K +E S
Sbjct: 58 QRALKEVKLYDDQKIFVTVAKKKLDDKKRKKNAKTNKDSGDTEESQKSGETKNTEEIPSP 117
Query: 304 YEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEA 363
+K + L ++NL D++LK++FS+FGT+ ++ + G KG F F EA
Sbjct: 118 TKKKENGWLIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSEA 177
Query: 364 TRALNEMNGKMIGRKPLYV 382
+A MN K I +P+ V
Sbjct: 178 EKARAAMNRKAIRDRPVEV 196
Score = 131 (51.2 bits), Expect = 1.4e-12, Sum P(3) = 1.4e-12
Identities = 33/109 (30%), Positives = 54/109 (49%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
+ I+NL + L F+ FGTVL K+ + +G+ +G+ FV F+ A A+ +N
Sbjct: 238 LIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALTAMN 297
Query: 178 GMLINDKQVYVGLFVRRQER-AQQNVSPKFTNVYVNNLAETVTDEDLKK 225
G I D+QV V + + + A Q+ S N+ N+ V + D K
Sbjct: 298 GKKIKDRQVAVDWAIAKDKYLATQSASAA-GNIKEENVTGKVEEADENK 345
Score = 129 (50.5 bits), Expect = 2.9e-17, Sum P(3) = 2.9e-17
Identities = 53/204 (25%), Positives = 87/204 (42%)
Query: 24 GYGNVSLYV-GDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
G+G V+ + D ++ + E +LYD Q V + D KR + + +++
Sbjct: 45 GFGYVTFSMEDDAQRALKEVKLYD--DQKIFVTVAKKKLDDKKRKKNAKTNKDSGDTEES 102
Query: 83 ANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTV 142
+ E N I P P+ +K G + I+NL ++ L F+ FGTV
Sbjct: 103 QKSGETKNTEEI---P--------SPTKKKEN-GWLIIRNLSFKCEDDELKQIFSKFGTV 150
Query: 143 LSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNV 202
L ++ + +G+ KG+ FVQF+ A+ A +N I D+ V V E A
Sbjct: 151 LETRIPLKPDGKKKGFAFVQFKCVSEAEKARAAMNRKAIRDRPVEVDWTTSNTESAD--- 207
Query: 203 SPKFTNVYVNNLAETVTDEDLKKI 226
P+ T + ET + E K I
Sbjct: 208 -PEDTEE-PHKAEETTSTEKFKGI 229
Score = 123 (48.4 bits), Expect = 2.9e-17, Sum P(3) = 2.9e-17
Identities = 28/100 (28%), Positives = 49/100 (49%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEK 266
+ + + NL+ ++DLK+IF FGT+ A + DGK R F FV F+ A A+
Sbjct: 236 SRLIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALTA 295
Query: 267 LNGTTNNDKV----WYVGRAQKRAEREADLRAKFEQERIS 302
+NG D+ W + + + A + A ++E ++
Sbjct: 296 MNGKKIKDRQVAVDWAIAKDKYLATQSASAAGNIKEENVT 335
Score = 113 (44.8 bits), Expect = 7.9e-21, Sum P(2) = 7.9e-21
Identities = 24/91 (26%), Positives = 52/91 (57%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
+F++ L + N+ L + F+ G + +C V D + +G+G+V F E+ AQ A+K +
Sbjct: 6 LFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRALKEVK 65
Query: 178 GMLINDKQVYVGLFVRRQERAQQNVSPKFTN 208
L +D++++V + ++ + ++ + K TN
Sbjct: 66 --LYDDQKIFVTVAKKKLDDKKRKKNAK-TN 93
Score = 93 (37.8 bits), Expect = 5.0e-05, Sum P(3) = 5.0e-05
Identities = 23/89 (25%), Positives = 49/89 (55%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSN-GQSKGYGFVQFENEEAAQNAI--- 173
+FI+NL + + L + FG + +V ++ + G SKG F QF+++EAA+ I
Sbjct: 441 IFIRNLSFDSEEEGLEEVLLQFGELSYVRVVMNPDTGVSKGCAFAQFKSKEAAEKCIAAA 500
Query: 174 ---KMLNGMLINDKQVYVGLFVRRQERAQ 199
K +G+ ++ +++ + + + R + A+
Sbjct: 501 LDEKEFSGIKLDGRRLNILMAINRDDAAK 529
Score = 92 (37.4 bits), Expect = 2.9e-17, Sum P(3) = 2.9e-17
Identities = 25/91 (27%), Positives = 50/91 (54%)
Query: 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRA 366
+G ++++NL +E L+E+ +FG ++ +V+++ G SKG FA F E A +
Sbjct: 437 EGRTIFIRNLSFDSEEEGLEEVLLQFGELSYVRVVMNPDTGVSKGCAFAQFKSKEAAEKC 496
Query: 367 L------NEMNG-KMIGRKPLYVAVAQRKEE 390
+ E +G K+ GR+ L + +A +++
Sbjct: 497 IAAALDEKEFSGIKLDGRR-LNILMAINRDD 526
Score = 75 (31.5 bits), Expect = 1.4e-12, Sum P(3) = 1.4e-12
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANA-K 86
V+L+V L + + L ++FS++ + + V D+ K+ G+ YV +S DA A K
Sbjct: 4 VTLFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCR-GFGYVTFSMEDDAQRALK 62
Query: 87 E 87
E
Sbjct: 63 E 63
Score = 73 (30.8 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 25/108 (23%), Positives = 47/108 (43%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSA-IVMKDSDGKSRCFGFVNFQSPDAAAAAVEKL 267
+++ NL+ +E L+++ FG ++ +VM G S+ F F+S +AA +
Sbjct: 441 IFIRNLSFDSEEEGLEEVLLQFGELSYVRVVMNPDTGVSKGCAFAQFKSKEAAEKCIAAA 500
Query: 268 NGTTNNDKVWYVGRAQKRAER-EADLRAKFEQERISRYEKLKGANLYL 314
+ GR D AKF+ +++ + + NLYL
Sbjct: 501 LDEKEFSGIKLDGRRLNILMAINRDDAAKFKDKKVKTHTGSR--NLYL 546
Score = 57 (25.1 bits), Expect = 4.8e-09, Sum P(3) = 4.8e-09
Identities = 40/157 (25%), Positives = 66/157 (42%)
Query: 244 GKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADL----RAKFEQE 299
G+S +GFV FQ + A A+ LN NN ++ G QKR E L + K +
Sbjct: 640 GQSLGYGFVEFQEHEHAIQALRHLN---NNPDIF--G-PQKRPIVEFSLEDGRKLKIKAI 693
Query: 300 RISRYEK-LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD--QHGFSKGSGFAA 356
R+ +K LK + K K L + G + + K + + ++GS F+
Sbjct: 694 RLENSKKGLKHDRSQKAEQPQQLKG-KTKGLLQK-GNVNASKGKFNAGKQEMAQGSQFSG 751
Query: 357 F-SMPEEATRALNEMNGKM-IGRKPLYVAVAQRKEER 391
F + PE L + +M + P + RK ++
Sbjct: 752 FRTKPEVEHVELKDGKKRMKVLHMPSHKGPKIRKRDK 788
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 267 (99.0 bits), Expect = 1.8e-20, P = 1.8e-20
Identities = 80/288 (27%), Positives = 142/288 (49%)
Query: 118 VFIKNLDTSIDNKALCDTF--AAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIK 174
+++ +L +D L F A ++S KV + NG S+GYGFV+FE+ + A ++
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Query: 175 MLNGM-LINDKQVYV---GLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGH- 229
NG + N Q + F ++R + N P + ++V +LA V+D L + F
Sbjct: 165 EFNGAPMPNTDQPFRLNWASFSTGEKRLENN-GPDLS-IFVGDLAPDVSDALLHETFSEK 222
Query: 230 FGTITSAIVMKDSD-GKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAER 288
+ ++ +A V+ D++ G+S+ +GFV F + A+ ++NG + + +G A R
Sbjct: 223 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTN 282
Query: 289 EADLRAKFEQE-RISRYE-KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH 346
+ + +R E +++ LD S+ DE LK+ FSEFG I S K+ V
Sbjct: 283 GYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPV--- 339
Query: 347 GFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKAR 394
KG GF F A AL ++NG +IG++ + ++ + ++ R
Sbjct: 340 --GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPR 385
Score = 197 (74.4 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 51/184 (27%), Positives = 99/184 (53%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQ--VVSVRVCRDQSKRSSLGYAYVNYSNPQDAAN 84
N +++VGDL+ ++E+ L F+ + +VS++V R++ SS GY +V + + A
Sbjct: 102 NKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADK 161
Query: 85 AKEALNF--MPINGKPIRI---MYSHRDPSIRKSGYG-NVFIKNLDTSIDNKALCDTFAA 138
+ N MP +P R+ +S + + +G ++F+ +L + + L +TF+
Sbjct: 162 VLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSE 221
Query: 139 -FGTVLSCKVAIDSN-GQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQE 196
+ +V + KV +D+N G+SKGYGFV+F +E A+ +NG+ + + + +G R+
Sbjct: 222 KYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKT 281
Query: 197 RAQQ 200
Q
Sbjct: 282 NGYQ 285
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 264 (98.0 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 82/327 (25%), Positives = 155/327 (47%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSN-GQSKGYGFVQFENEEAAQNAIKM 175
+++I +L +D L F G ++S KV + GQS+GYGF++F + AA+ ++
Sbjct: 85 SLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAAETILQT 144
Query: 176 LNGMLI-NDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGH-FGTI 233
NG L+ N +Q + + +++ S + T ++V +LA VTD L++ F + ++
Sbjct: 145 YNGTLMPNVEQNFRMNWASLGAGERRDDSAEHT-IFVGDLAADVTDYILQETFKSVYSSV 203
Query: 234 TSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADL 292
A V+ D G+S+ +GFV F A+ ++NG + + +G A +
Sbjct: 204 RGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAANKKPVGTPQ 263
Query: 293 RAKFEQERISRYEK-LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKG 351
+A ++ + ++ E +++ LD ++ +E L+++FS +G + K++ K
Sbjct: 264 KATYQNPQATQGESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIVA-----GKR 318
Query: 352 SGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRAPGGMSPL 411
GF F A +AL+ +NG +G + + ++ R K Q Q+ + G
Sbjct: 319 CGFVQFGTRASAEQALSSLNGTQLGGQSIRLSWG-RSPSSKQTDQTQWGG--SGGAYYGY 375
Query: 412 ASGIPGYHHGAPRLGPQQLYYGQGTPG 438
G Y + P P +YYG PG
Sbjct: 376 GQGYEAYGYAPPAQDPN-MYYGN-YPG 400
Score = 249 (92.7 bits), Expect = 1.6e-18, P = 1.6e-18
Identities = 76/270 (28%), Positives = 132/270 (48%)
Query: 22 PSGYGNV--SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNP 79
P+G N SL++GDL+ ++E+ L F ++VS +V R++ S GY ++ + +
Sbjct: 76 PTGNPNEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSH 135
Query: 80 QDAANAKEALN--FMPINGKPIRIMYSHRDPSIRK--SGYGNVFIKNLDTSIDNKALCDT 135
A + N MP + R+ ++ R+ S +F+ +L + + L +T
Sbjct: 136 AAAETILQTYNGTLMPNVEQNFRMNWASLGAGERRDDSAEHTIFVGDLAADVTDYILQET 195
Query: 136 F-AAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVR 193
F + + +V KV D G+SKGYGFV+F +E A+ +NG+L + + + +G
Sbjct: 196 FKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAAN 255
Query: 194 R------QERAQQNVS-------PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMK 240
+ Q+ QN P T ++V L TV +E L+++F +G + ++
Sbjct: 256 KKPVGTPQKATYQNPQATQGESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIVA 315
Query: 241 DSDGKSRCFGFVNFQSPDAAAAAVEKLNGT 270
GK RC GFV F + +A A+ LNGT
Sbjct: 316 ---GK-RC-GFVQFGTRASAEQALSSLNGT 340
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 225 (84.3 bits), Expect = 7.6e-20, Sum P(2) = 7.6e-20
Identities = 53/170 (31%), Positives = 90/170 (52%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+LYVG+L+ +V+E L LFS + V S ++ R+ YA++ YSN Q A A A
Sbjct: 8 TLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDP---YAFIEYSNYQAATTALTA 64
Query: 89 LNFMPINGKPIRIMYSH---RDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSC 145
+N K I++ ++ P S + ++F+ +L I+ + L + FA FG + +C
Sbjct: 65 MNKRLFLEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNC 124
Query: 146 KVAIDSNG-QSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRR 194
++ D + +SKGY FV F + A+NAI+ +NG I + + R+
Sbjct: 125 RIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRK 174
Score = 182 (69.1 bits), Expect = 7.1e-13, Sum P(2) = 7.1e-13
Identities = 42/153 (27%), Positives = 81/153 (52%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
+++ NLD+S+ L F+ G V SCK+ I G Y F+++ N +AA A+ +N
Sbjct: 9 LYVGNLDSSVSEDLLIALFSTMGPVKSCKI-IREPGNDP-YAFIEYSNYQAATTALTAMN 66
Query: 178 GMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAI 237
L +K++ V + + ++S +++V +L+ + E L++ F FG I++
Sbjct: 67 KRLFLEKEIKVNWATSPGNQPKTDISSHH-HIFVGDLSPEIETETLREAFAPFGEISNCR 125
Query: 238 VMKDSDG-KSRCFGFVNFQSPDAAAAAVEKLNG 269
+++D KS+ + FV+F A A++ +NG
Sbjct: 126 IVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNG 158
Score = 154 (59.3 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 52/210 (24%), Positives = 92/210 (43%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLN 268
+YV NL +V+++ L +F G + S ++++ + F+ + + AA A+ +N
Sbjct: 9 LYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDP--YAFIEYSNYQAATTALTAMN 66
Query: 269 GTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKE 328
+K V A + + IS + ++++ +L I E L+E
Sbjct: 67 KRLFLEKEIKVNWATSPGNQP--------KTDISSHH-----HIFVGDLSPEIETETLRE 113
Query: 329 LFSEFGTITSCKVMVDQHGF-SKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQR 387
F+ FG I++C+++ D H SKG F +F EA A+ MNG+ IG + + + R
Sbjct: 114 AFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTR 173
Query: 388 KEERKARLQAQFAQIRAPGGMSPLASGIPG 417
K Q GG SG+ G
Sbjct: 174 KLPPPREPSKGGGQGGGMGGGPGNGSGVKG 203
Score = 84 (34.6 bits), Expect = 7.6e-20, Sum P(2) = 7.6e-20
Identities = 28/82 (34%), Positives = 35/82 (42%)
Query: 196 ERAQQNVSPKFTNVYVNNLAETVTDEDLK-KIFGHFGTITSAIVMKDSDGKSRCFGFVNF 254
E SP T VY V +DL K F FG I V KD F F+ F
Sbjct: 210 EEVYNQSSPTNTTVYCGGFPPNVISDDLMHKHFVQFGPIQDVRVFKDKG-----FSFIKF 264
Query: 255 QSPDAAAAAVEKLNGTTNNDKV 276
+ +AAA A+E T+N +V
Sbjct: 265 VTKEAAAHAIEH----THNSEV 282
Score = 64 (27.6 bits), Expect = 9.3e-18, Sum P(2) = 9.3e-18
Identities = 46/189 (24%), Positives = 74/189 (39%)
Query: 321 INDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEM-NGKMIGRKP 379
I+D+ + + F +FG I +V D+ GFS F F E A A+ N ++ G
Sbjct: 233 ISDDLMHKHFVQFGPIQDVRVFKDK-GFS----FIKFVTKEAAAHAIEHTHNSEVHGNLV 287
Query: 380 LYVAVAQRKEERKAR-LQAQFAQIRAPGGMSPLASGIPGYHHGAPRLGP----QQLYYGQ 434
+ + A L A A A ++ +A+ GA G QQ+
Sbjct: 288 KCFWGKENGGDNSANNLNAAAAAAAASANVAAVAAANAAVAAGAGMPGQMMTQQQIAAAT 347
Query: 435 GT--PGLM--PPQAAG---YGFQQQVF---PGLRPGGPNYIMPYHLQRQVHP-GQRTGVR 483
G PG M P Q A Y +QQ + P P + ++Q+ +P T +
Sbjct: 348 GAAIPGQMMTPQQIAAQYPYAYQQMGYWYPPATYP--TTQMQTQYMQQGYYPYAYPTSAQ 405
Query: 484 RSGNTHQMQ 492
++G +Q
Sbjct: 406 QAGGVPCIQ 414
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 253 (94.1 bits), Expect = 3.5e-19, P = 3.5e-19
Identities = 74/262 (28%), Positives = 127/262 (48%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+LYVG+L ++V E+ + LF Q+ S ++ D + Y +V + + AA + A
Sbjct: 9 TLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDTAGNDP--YCFVEFFEHRHAAASLAA 66
Query: 89 LNFMPINGKPIRIMYSHRDPSIRK--SGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCK 146
+N I GK +++ ++ S +K S + +VF+ +L I + FA FG + +
Sbjct: 67 MNGRKIMGKEVKVNWATSPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGRISDAR 126
Query: 147 VAID-SNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQE--RA--QQN 201
V D + G+SKGYGFV F N+ A+NAI+ + G + +Q+ R+ +A + N
Sbjct: 127 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKATYETN 186
Query: 202 V------------SPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCF 249
SP VY + +T++ +++ F FG I V D +
Sbjct: 187 TKHLSFDEVVNQSSPSNCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVFPDKG-----Y 241
Query: 250 GFVNFQSPDAAAAAVEKLNGTT 271
FV F S ++AA A+ +NGT+
Sbjct: 242 SFVRFNSHESAAHAIVSVNGTS 263
Score = 228 (85.3 bits), Expect = 3.1e-16, P = 3.1e-16
Identities = 66/261 (25%), Positives = 122/261 (46%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
+++ NL + + F G SCK+ +D+ G Y FV+F A ++ +N
Sbjct: 10 LYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDTAGNDP-YCFVEFFEHRHAAASLAAMN 68
Query: 178 GMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAI 237
G I K+V V + +++ S F +V+V +L+ +T +D++ F FG I+ A
Sbjct: 69 GRKIMGKEVKVN-WATSPSSQKKDTSNHF-HVFVGDLSPEITTDDIRAAFAPFGRISDAR 126
Query: 238 VMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKV----WYVGRAQK-RAEREAD 291
V+KD + GKS+ +GFV+F + A A++++ G + W + +A E +
Sbjct: 127 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKATYETN 186
Query: 292 LRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKG 351
+ E +++ +Y + + ++ +++ FS FG I +V D KG
Sbjct: 187 TKHLSFDEVVNQSSP-SNCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVFPD-----KG 240
Query: 352 SGFAAFSMPEEATRALNEMNG 372
F F+ E A A+ +NG
Sbjct: 241 YSFVRFNSHESAAHAIVSVNG 261
Score = 150 (57.9 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 50/186 (26%), Positives = 86/186 (46%)
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAA 263
PK +YV NL+ VT+ + ++FG G S ++ D+ G + FV F AAA+
Sbjct: 7 PK--TLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDTAGNDP-YCFVEFFEHRHAAAS 63
Query: 264 VEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIND 323
+ +NG K V A + ++ D F ++++ +L I
Sbjct: 64 LAAMNGRKIMGKEVKVNWATSPSSQKKDTSNHF--------------HVFVGDLSPEITT 109
Query: 324 EKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYV 382
+ ++ F+ FG I+ +V+ D G SKG GF +F +A A+ +M G+ +G + +
Sbjct: 110 DDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 169
Query: 383 AVAQRK 388
A RK
Sbjct: 170 NWATRK 175
>FB|FBgn0262475 [details] [associations]
symbol:bru-2 "bruno-2" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=ISA] [GO:0003723 "RNA binding" evidence=ISA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014134 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00560000076837
RefSeq:NP_001036356.1 UniGene:Dm.412 ProteinModelPortal:Q0E8R3
SMR:Q0E8R3 PRIDE:Q0E8R3 EnsemblMetazoa:FBtr0304856
EnsemblMetazoa:FBtr0332233 GeneID:250811 KEGG:dme:Dmel_CG43065
UCSC:CG31761-RE CTD:250811 FlyBase:FBgn0262475 OMA:AHVANGN
PhylomeDB:Q0E8R3 GenomeRNAi:250811 NextBio:843510 Bgee:Q0E8R3
Uniprot:Q0E8R3
Length = 893
Score = 166 (63.5 bits), Expect = 3.7e-19, Sum P(2) = 3.7e-19
Identities = 45/152 (29%), Positives = 71/152 (46%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
N+ ++VG + + +E++L +F Q V ++ V RD+ S G +V Y + A A+
Sbjct: 294 NIKMFVGQIPKTWDETRLRQMFEQFGPVHTLNVLRDKVTSISRGCCFVTYYTRKAALRAQ 353
Query: 87 EAL-NFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSC 145
+AL N ++G I D R +F+ L+ + F GT+ C
Sbjct: 354 DALHNIKTLDGMHHPIQMKPADSENRNER--KLFVGMLNKKYTEADVRQLFTGHGTIEEC 411
Query: 146 KVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
V D GQSKG FV F ++ A AIK L+
Sbjct: 412 TVLRDQAGQSKGCAFVTFATKQNAIGAIKALH 443
Score = 150 (57.9 bits), Expect = 3.7e-19, Sum P(2) = 3.7e-19
Identities = 52/175 (29%), Positives = 75/175 (42%)
Query: 219 TDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWY 278
T ++ ++ GH T T G S+ F P+AA L+G TN Y
Sbjct: 727 TTYNMPQLIGHTATPTQP------GGSSQSLTFNALWPPNAADPYSSSLSGLTNGAA--Y 778
Query: 279 VGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITS 338
G A + A L+A + E G+NL++ +L D L F FG + S
Sbjct: 779 -GAASQPVTTSA-LQAAAAGVTGKQIEGPDGSNLFIYHLPQEFIDTDLASTFLPFGNVLS 836
Query: 339 CKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERK 392
KV +D Q SK GF ++ P A A+ M+G IG K L V + + K+ K
Sbjct: 837 AKVFIDKQTNLSKCFGFVSYDNPHSANAAIQAMHGFQIGSKRLKVQLKRSKDAAK 891
Score = 124 (48.7 bits), Expect = 0.00048, P = 0.00048
Identities = 30/75 (40%), Positives = 42/75 (56%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQ-SKGYGFVQFENEEAAQNAIKM 175
N+FI +L + L TF FG VLS KV ID SK +GFV ++N +A AI+
Sbjct: 809 NLFIYHLPQEFIDTDLASTFLPFGNVLSAKVFIDKQTNLSKCFGFVSYDNPHSANAAIQA 868
Query: 176 LNGMLINDKQVYVGL 190
++G I K++ V L
Sbjct: 869 MHGFQIGSKRLKVQL 883
Score = 119 (46.9 bits), Expect = 6.2e-16, Sum P(2) = 6.2e-16
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 199 QQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGK-SRCFGFVNFQSP 257
+Q P +N+++ +L + D DL F FG + SA V D S+CFGFV++ +P
Sbjct: 800 KQIEGPDGSNLFIYHLPQEFIDTDLASTFLPFGNVLSAKVFIDKQTNLSKCFGFVSYDNP 859
Query: 258 DAAAAAVEKLNG 269
+A AA++ ++G
Sbjct: 860 HSANAAIQAMHG 871
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 237 (88.5 bits), Expect = 4.4e-19, P = 4.4e-19
Identities = 49/151 (32%), Positives = 85/151 (56%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+L V L QN+ + +L LF + ++ S ++ RD+ SLGY +VNY +P+DA A
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN + + K I++ Y+ PS N+++ L ++ K L F+ +G +++ ++
Sbjct: 100 LNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 157
Query: 149 IDS-NGQSKGYGFVQFENEEAAQNAIKMLNG 178
+D G S+G GF++F+ A+ AIK LNG
Sbjct: 158 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 209 (78.6 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 51/155 (32%), Positives = 84/155 (54%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+ + L ++ + L F + G + SCK+ D GQS GYGFV + + + A+ AI
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI-T 234
LNG+ + K + V + R + S + N+YV+ L +T+T ++L+++F +G I T
Sbjct: 100 LNGLRLQTKTIKVS-YAR-----PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
S I++ G SR GF+ F A A++ LNG
Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 148 (57.2 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 56/177 (31%), Positives = 81/177 (45%)
Query: 201 NVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDA 259
N TN+ VN L + +T E+LK +FG G I S +++D G+S +GFVN+ P
Sbjct: 33 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 260 AAAAVEKLNGT---TNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKN 316
A A+ LNG T KV Y R + R+A+L +S K + K
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYA-RPSSASIRDANLY-------VSGLPK----TMTQKE 140
Query: 317 LDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGK 373
L E+L + ITS ++ G S+G GF F EA A+ +NG+
Sbjct: 141 L------EQLFSQYGRI--ITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 125 (49.1 bits), Expect = 9.8e-06, P = 9.8e-06
Identities = 28/77 (36%), Positives = 45/77 (58%)
Query: 311 NLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNE 369
NL + L ++ E+LK LF G I SCK++ D+ G S G GF + P++A +A+N
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 370 MNGKMIGRKPLYVAVAQ 386
+NG + K + V+ A+
Sbjct: 100 LNGLRLQTKTIKVSYAR 116
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 216 (81.1 bits), Expect = 7.0e-19, Sum P(2) = 7.0e-19
Identities = 47/163 (28%), Positives = 87/163 (53%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSS-LGYAYVNYSNPQDAANAKE 87
+LYVG L+ V E L +F V+SV++ D++ S Y +V + +P A A +
Sbjct: 91 ALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERAMQ 150
Query: 88 ALNFMPINGKPIRIMYSHRDPSIRK---SGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS 144
LN I+ IR+ ++++ + K S + ++F+ +L ++++ L F+AFG+V
Sbjct: 151 TLNGRRIHQSEIRVNWAYQSNTANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSE 210
Query: 145 CKVAID-SNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQV 186
+V D G+S+GYGFV F A+ A+ ++G + + +
Sbjct: 211 ARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAI 253
Score = 214 (80.4 bits), Expect = 2.5e-14, P = 2.5e-14
Identities = 76/278 (27%), Positives = 124/278 (44%)
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSD--GKSRCFGFVNFQSPDAAA 261
P +YV L VT++ LK+IF G + S ++ D + K +GFV F P AA
Sbjct: 87 PNKRALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAE 146
Query: 262 AAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAK--FEQERISRYEKLKGANLYLKNLDD 319
A++ LNG R ++++R ++ ++ + ++++ +L +
Sbjct: 147 RAMQTLNG---------------RRIHQSEIRVNWAYQSNTANKEDTSNHFHIFVGDLSN 191
Query: 320 SINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEMNGKMIGRK 378
+NDE L + FS FG+++ +VM D G S+G GF AF +A +AL M+G+ +G +
Sbjct: 192 EVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSR 251
Query: 379 PLYVAVAQRKEERKARLQAQFAQIRAPGGMSPLASGIPGYHHGAPRLGPQQL-YYGQGTP 437
+ A +K + Q Q A GM+P P HH P G Q Q TP
Sbjct: 252 AIRCNWANQKGQPSISQQ----QAMAAMGMTPTT---PFGHHHFPTHGIQSYDMVVQQTP 304
Query: 438 GLMPPQAAG----YGFQQQVFPGLRPGGPNYIMPYHLQ 471
G Y Q + P + G Y++ +Q
Sbjct: 305 AWQTTCYVGNLTPYTTQNDIVPLFQNFG--YVIETRMQ 340
Score = 211 (79.3 bits), Expect = 2.6e-18, Sum P(2) = 2.6e-18
Identities = 51/155 (32%), Positives = 85/155 (54%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKG--YGFVQFENEEAAQNAIKM 175
+++ LD + L F G V+S K+ D N SKG YGFV+F++ AA+ A++
Sbjct: 92 LYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERAMQT 151
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITS 235
LNG I+ ++ V + +++ S F +++V +L+ V DE L + F FG+++
Sbjct: 152 LNGRRIHQSEIRVNWAYQSNTANKEDTSNHF-HIFVGDLSNEVNDEVLLQAFSAFGSVSE 210
Query: 236 AIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
A VM D G+SR +GFV F+ A A+ ++G
Sbjct: 211 ARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDG 245
Score = 96 (38.9 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 25/83 (30%), Positives = 39/83 (46%)
Query: 30 LYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL 89
++VGDL VN+ L FS V RV D S GY +V + DA A ++
Sbjct: 184 IFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSM 243
Query: 90 NFMPINGKPIRIMYSHR--DPSI 110
+ + + IR ++++ PSI
Sbjct: 244 DGEWLGSRAIRCNWANQKGQPSI 266
Score = 85 (35.0 bits), Expect = 7.0e-19, Sum P(2) = 7.0e-19
Identities = 41/148 (27%), Positives = 57/148 (38%)
Query: 313 YLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG 372
Y+ NL + LF FG + ++ D+ GF+ F E A A+ ++NG
Sbjct: 311 YVGNLTPYTTQNDIVPLFQNFGYVIETRMQADR-GFA----FIKMDTHENAASAICQLNG 365
Query: 373 KMIGRKPLYVAVAQRKEERKARLQAQFAQIRAPGGMSPLASGIPG-Y--HHGAPRLGPQQ 429
+ +PL + + + QF SP AS PG Y +G P GP
Sbjct: 366 YNVNGRPLKCSWGKDRPPT-----GQFDNFPGQQANSPFASS-PGPYFPQYGGPG-GPMT 418
Query: 430 LYY-GQGTPGLMPPQAAGYGFQQQVFPG 456
Q G PQ A GF Q PG
Sbjct: 419 PQGPAQAGRGWEQPQMAQQGFGQ--VPG 444
Score = 84 (34.6 bits), Expect = 8.9e-19, Sum P(2) = 8.9e-19
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEK 266
T YV NL T D+ +F +FG + + D R F F+ + + AA+A+ +
Sbjct: 308 TTCYVGNLTPYTTQNDIVPLFQNFGYVIETRMQAD-----RGFAFIKMDTHENAASAICQ 362
Query: 267 LNGTTNNDK 275
LNG N +
Sbjct: 363 LNGYNVNGR 371
Score = 70 (29.7 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 119 FIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNG 178
++ NL + F FG V+ ++ D +G+ F++ + E A +AI LNG
Sbjct: 311 YVGNLTPYTTQNDIVPLFQNFGYVIETRMQAD-----RGFAFIKMDTHENAASAICQLNG 365
Query: 179 MLINDK 184
+N +
Sbjct: 366 YNVNGR 371
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 244 (91.0 bits), Expect = 8.5e-19, P = 8.5e-19
Identities = 68/265 (25%), Positives = 125/265 (47%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQF-ENEEAAQNAIKML 176
+++ NL + + F+ G SCK+ +D+ G Y FV+F EN AA A+ +
Sbjct: 11 LYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDP-YCFVEFYENRHAAA-ALAAM 68
Query: 177 NGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSA 236
NG I K + V + +++ S F +V+V +L+ ++ +D++ F FG I+ A
Sbjct: 69 NGRKILGKDMKVN-WASTPSSQKKDTSNHF-HVFVGDLSPEISTDDVRAAFAPFGKISDA 126
Query: 237 IVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKV----WYVGR-AQKRAEREA 290
V+KD + GKS+ +GF++F + A +A++++NG + W + + ++ E
Sbjct: 127 RVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSAPKSNNEG 186
Query: 291 DLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSK 350
E + +Y + ++D+ +++ FS FG I +V + K
Sbjct: 187 ASSKHLSYEEVLNQSSPSNCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVFPE-----K 241
Query: 351 GSGFAAFSMPEEATRALNEMNGKMI 375
G F F E A A+ +NG I
Sbjct: 242 GYSFVRFDSHEGAAHAIVSVNGTCI 266
Score = 223 (83.6 bits), Expect = 5.6e-16, P = 5.6e-16
Identities = 69/259 (26%), Positives = 126/259 (48%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+LYVG+L ++V E+ + +FSQ+ S ++ D + Y +V + + AA A A
Sbjct: 10 TLYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDP--YCFVEFYENRHAAAALAA 67
Query: 89 LNFMPINGKPIRIMYSHRDPSIRK--SGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCK 146
+N I GK +++ ++ S +K S + +VF+ +L I + FA FG + +
Sbjct: 68 MNGRKILGKDMKVNWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKISDAR 127
Query: 147 VAID-SNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPK 205
V D + G+SKGYGF+ F N+ A++AI+ +NG + +Q+ R+ + N +
Sbjct: 128 VVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSAPKSN-NEG 186
Query: 206 FTNVYVNNLAETVTDEDLKKIFGHFGTITSAI---VMKDSDG------KSRCF-----GF 251
++ +++ E + + G I S + +M+ + + R F F
Sbjct: 187 ASSKHLS-YEEVLNQSSPSNCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVFPEKGYSF 245
Query: 252 VNFQSPDAAAAAVEKLNGT 270
V F S + AA A+ +NGT
Sbjct: 246 VRFDSHEGAAHAIVSVNGT 264
Score = 152 (58.6 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 49/181 (27%), Positives = 85/181 (46%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLN 268
+YV NL+ VT+ + ++F G S ++ D+ G + FV F AAAA+ +N
Sbjct: 11 LYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDP-YCFVEFYENRHAAAALAAMN 69
Query: 269 GTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKE 328
G K V A + ++ D F ++++ +L I+ + ++
Sbjct: 70 GRKILGKDMKVNWASTPSSQKKDTSNHF--------------HVFVGDLSPEISTDDVRA 115
Query: 329 LFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQR 387
F+ FG I+ +V+ D G SKG GF +F +A A+ +MNG+ +G + + A R
Sbjct: 116 AFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATR 175
Query: 388 K 388
K
Sbjct: 176 K 176
Score = 147 (56.8 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 46/173 (26%), Positives = 80/173 (46%)
Query: 30 LYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL 89
++VGDL ++ + F+ ++ RV +D + S GY ++++ N DA +A + +
Sbjct: 99 VFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQM 158
Query: 90 NFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLD-TSIDNKAL---CDTFAA-FGTVLS 144
N + G+ IR ++ R PS KS K+L + N++ C + + LS
Sbjct: 159 NGQWLGGRQIRTNWATRKPSAPKSNNEGASSKHLSYEEVLNQSSPSNCTVYCGGIASGLS 218
Query: 145 CKV---AIDSNGQ--------SKGYGFVQFENEEAAQNAIKMLNGMLINDKQV 186
++ GQ KGY FV+F++ E A +AI +NG I V
Sbjct: 219 DQLMRQTFSPFGQIMEIRVFPEKGYSFVRFDSHEGAAHAIVSVNGTCIEGHTV 271
>ZFIN|ZDB-GENE-000501-2 [details] [associations]
symbol:celf3a "cugbp, Elav-like family member 3a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000501-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
EMBL:AB032725 EMBL:BX248499 EMBL:BC060923 IPI:IPI00504951
RefSeq:NP_571569.2 UniGene:Dr.8323 ProteinModelPortal:Q9IBD1
SMR:Q9IBD1 Ensembl:ENSDART00000039629 GeneID:57922 KEGG:dre:57922
CTD:57922 OMA:MQHYTAT OrthoDB:EOG4RJG30 NextBio:20891938
Bgee:Q9IBD1 Uniprot:Q9IBD1
Length = 452
Score = 158 (60.7 bits), Expect = 9.0e-19, Sum P(2) = 9.0e-19
Identities = 41/154 (26%), Positives = 76/154 (49%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKE 87
+ L++G + +N+ E L +F Q ++ + V +D+ G A++ Y + A A+
Sbjct: 7 IKLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQN 66
Query: 88 ALN---FMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS 144
AL+ +P +PI++ + D R G +F+ L + + + F FG++
Sbjct: 67 ALHEQKTLPGMNRPIQVKPA--DSEGR--GDRKLFVGMLGKQLSDADVRKMFEPFGSIEE 122
Query: 145 CKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNG 178
C V +G SKG FV++++ AQ AI L+G
Sbjct: 123 CTVLRGPDGASKGCAFVKYQSNAEAQAAISALHG 156
Score = 147 (56.8 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 41/154 (26%), Positives = 76/154 (49%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKML 176
+FI + +++ K L F FG + V D G KG F+ + A ++A+K
Sbjct: 9 LFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYC---ARESALKAQ 65
Query: 177 NGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSA 236
N + ++++ G+ Q + + ++V L + ++D D++K+F FG+I
Sbjct: 66 NAL--HEQKTLPGMNRPIQVKPADSEGRGDRKLFVGMLGKQLSDADVRKMFEPFGSIEEC 123
Query: 237 IVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGT 270
V++ DG S+ FV +QS A AA+ L+G+
Sbjct: 124 TVLRGPDGASKGCAFVKYQSNAEAQAAISALHGS 157
Score = 146 (56.5 bits), Expect = 9.0e-19, Sum P(2) = 9.0e-19
Identities = 27/78 (34%), Positives = 51/78 (65%)
Query: 193 RRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGF 251
++ ++ QQ P+ N+++ +L + TD ++ ++F FG + SA V D + +S+CFGF
Sbjct: 353 QQPQQLQQREGPEGCNIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGF 412
Query: 252 VNFQSPDAAAAAVEKLNG 269
V+F +P +A AA++ +NG
Sbjct: 413 VSFDNPASAQAAIQAMNG 430
Score = 137 (53.3 bits), Expect = 7.8e-18, Sum P(2) = 7.8e-18
Identities = 30/97 (30%), Positives = 52/97 (53%)
Query: 297 EQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFA 355
+ +++ + E +G N+++ +L D ++ ++F FG + S KV VD+ SK GF
Sbjct: 354 QPQQLQQREGPEGCNIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFV 413
Query: 356 AFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERK 392
+F P A A+ MNG IG K L V + + K+ +
Sbjct: 414 SFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 450
Score = 135 (52.6 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKM 175
N+FI +L + + F FG V+S KV +D + QSK +GFV F+N +AQ AI+
Sbjct: 368 NIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 427
Query: 176 LNGMLINDKQVYVGL 190
+NG I K++ V L
Sbjct: 428 MNGFQIGMKRLKVQL 442
Score = 124 (48.7 bits), Expect = 0.00019, P = 0.00019
Identities = 40/151 (26%), Positives = 63/151 (41%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMN 371
L++ L ++D ++++F FG+I C V+ G SKG F + EA A++ ++
Sbjct: 96 LFVGMLGKQLSDADVRKMFEPFGSIEECTVLRGPDGASKGCAFVKYQSNAEAQAAISALH 155
Query: 372 GKMI---GRKPLYVAVAQRKEERKARLQAQFAQIRAPGGMSPLASGIPGYHHGAPRLGPQ 428
G L V A ++ER R Q A G +SP++ + Y+ L Q
Sbjct: 156 GSRTLPGASSSLVVKFADTEKERGIRRMQQVAS--QLGVISPMSLHLGAYNAYTQALVQQ 213
Query: 429 QLYYGQGTPGLMPPQAAGYGFQQQVFPGLRP 459
Q Q + P A Q Q L P
Sbjct: 214 QALVAQSA--YLSPVATVAAVQMQQLAALNP 242
Score = 64 (27.6 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 24 GYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAA 83
G G+ L+VG L + ++++ + +F + V R S G A+V Y + +A
Sbjct: 90 GRGDRKLFVGMLGKQLSDADVRKMFEPFGSIEECTVLRGPDGASK-GCAFVKYQSNAEAQ 148
Query: 84 NAKEALN 90
A AL+
Sbjct: 149 AAISALH 155
>GENEDB_PFALCIPARUM|PF14_0194 [details] [associations]
symbol:PF14_0194 "spliceosome-associated
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 EMBL:AE014187
HSSP:P11940 KO:K12831 RefSeq:XP_001348367.1
ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0 MINT:MINT-1577513
EnsemblProtists:PF14_0194:mRNA GeneID:811775 KEGG:pfa:PF14_0194
EuPathDB:PlasmoDB:PF3D7_1420000 ProtClustDB:CLSZ2501032
Uniprot:Q8ILQ0
Length = 484
Score = 253 (94.1 bits), Expect = 9.5e-19, Sum P(2) = 9.5e-19
Identities = 53/173 (30%), Positives = 95/173 (54%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+LY+ +L+ V+E L +LF Q V +V + RD+ GY +V Y + A
Sbjct: 21 TLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYEYECEYAANI 80
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN + GK +R + +D G N+FI NLD +D K L D F++FG +++ KV
Sbjct: 81 LNMTKLFGKALRCNKATQDKRSFDVG-ANLFIGNLDDEVDEKMLFDIFSSFGQIMTVKVM 139
Query: 149 IDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQN 201
+ + SKG+GF+ ++N E++ AI+ +N I +K+V++ ++ + +++
Sbjct: 140 RNEDDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDSKGERH 192
Score = 199 (75.1 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 52/189 (27%), Positives = 92/189 (48%)
Query: 112 KSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQ 170
++ ++I NLD +D + LC+ F G V + + D NG GYGFV++E E +
Sbjct: 16 RNNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYEYECE 75
Query: 171 NAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHF 230
A +LN + K + Q++ +V N+++ NL + V ++ L IF F
Sbjct: 76 YAANILNMTKLFGKALRCNKAT--QDKRSFDVG---ANLFIGNLDDEVDEKMLFDIFSSF 130
Query: 231 GTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGT-TNNDKVW--YVGRAQKRAE 287
G I + VM++ D S+ GF+++ + +++ A+E +N N KV Y + + E
Sbjct: 131 GQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDSKGE 190
Query: 288 READLRAKF 296
R +F
Sbjct: 191 RHGTAAERF 199
Score = 159 (61.0 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 31/86 (36%), Positives = 54/86 (62%)
Query: 309 GANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALN 368
GANL++ NLDD ++++ L ++FS FG I + KVM ++ SKG GF ++ E + A+
Sbjct: 106 GANLFIGNLDDEVDEKMLFDIFSSFGQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIE 165
Query: 369 EMNGKMIGRKPLYVAVAQRKEERKAR 394
MN + I K ++++ A +K+ + R
Sbjct: 166 NMNNQFICNKKVHISYAFKKDSKGER 191
Score = 43 (20.2 bits), Expect = 9.5e-19, Sum P(2) = 9.5e-19
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 437 PGLMPPQAAGYGFQQQVFPGLRPGGPNY 464
P +PP GF + P L P P+Y
Sbjct: 441 PPTLPPNIPP-GFPPNIPPNLPPNIPSY 467
>UNIPROTKB|Q8ILQ0 [details] [associations]
symbol:PF14_0194 "Spliceosome-associated protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AE014187 HSSP:P11940 KO:K12831
RefSeq:XP_001348367.1 ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0
MINT:MINT-1577513 EnsemblProtists:PF14_0194:mRNA GeneID:811775
KEGG:pfa:PF14_0194 EuPathDB:PlasmoDB:PF3D7_1420000
ProtClustDB:CLSZ2501032 Uniprot:Q8ILQ0
Length = 484
Score = 253 (94.1 bits), Expect = 9.5e-19, Sum P(2) = 9.5e-19
Identities = 53/173 (30%), Positives = 95/173 (54%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+LY+ +L+ V+E L +LF Q V +V + RD+ GY +V Y + A
Sbjct: 21 TLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYEYECEYAANI 80
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN + GK +R + +D G N+FI NLD +D K L D F++FG +++ KV
Sbjct: 81 LNMTKLFGKALRCNKATQDKRSFDVG-ANLFIGNLDDEVDEKMLFDIFSSFGQIMTVKVM 139
Query: 149 IDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQN 201
+ + SKG+GF+ ++N E++ AI+ +N I +K+V++ ++ + +++
Sbjct: 140 RNEDDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDSKGERH 192
Score = 199 (75.1 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 52/189 (27%), Positives = 92/189 (48%)
Query: 112 KSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQ 170
++ ++I NLD +D + LC+ F G V + + D NG GYGFV++E E +
Sbjct: 16 RNNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYEYECE 75
Query: 171 NAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHF 230
A +LN + K + Q++ +V N+++ NL + V ++ L IF F
Sbjct: 76 YAANILNMTKLFGKALRCNKAT--QDKRSFDVG---ANLFIGNLDDEVDEKMLFDIFSSF 130
Query: 231 GTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGT-TNNDKVW--YVGRAQKRAE 287
G I + VM++ D S+ GF+++ + +++ A+E +N N KV Y + + E
Sbjct: 131 GQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDSKGE 190
Query: 288 READLRAKF 296
R +F
Sbjct: 191 RHGTAAERF 199
Score = 159 (61.0 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 31/86 (36%), Positives = 54/86 (62%)
Query: 309 GANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALN 368
GANL++ NLDD ++++ L ++FS FG I + KVM ++ SKG GF ++ E + A+
Sbjct: 106 GANLFIGNLDDEVDEKMLFDIFSSFGQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIE 165
Query: 369 EMNGKMIGRKPLYVAVAQRKEERKAR 394
MN + I K ++++ A +K+ + R
Sbjct: 166 NMNNQFICNKKVHISYAFKKDSKGER 191
Score = 43 (20.2 bits), Expect = 9.5e-19, Sum P(2) = 9.5e-19
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 437 PGLMPPQAAGYGFQQQVFPGLRPGGPNY 464
P +PP GF + P L P P+Y
Sbjct: 441 PPTLPPNIPP-GFPPNIPPNLPPNIPSY 467
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 251 (93.4 bits), Expect = 9.9e-19, P = 9.9e-19
Identities = 91/371 (24%), Positives = 165/371 (44%)
Query: 93 PINGKPIRIMYS---HRDPSIRKSG-YGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
P +G+P + Y ++P +G +++I +L +D L + F G + KV
Sbjct: 55 PSSGQPQQQQYGGGGSQNPG--SAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVI 112
Query: 149 IDS-NGQSKGYGFVQFENEEAAQNAIKMLNGM-LINDKQVYVGLFVR--RQERAQQNVSP 204
+ NG S+GYGF++F N A+ ++ NG + + +Q + + + ER Q P
Sbjct: 113 RNKQNGYSEGYGFIEFVNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAE-GP 171
Query: 205 KFTNVYVNNLAETVTDEDLKKIF-GHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAA 262
+ T V+V +LA VTD L + F + ++ A V+ D + G+S+ +GFV F
Sbjct: 172 EHT-VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIR 230
Query: 263 AVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
A+ ++NG + + G A + + + S +++ +D S+
Sbjct: 231 AMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVT 290
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYV 382
++ LK +F +FG + K+ K GF ++ A +AL+ +NG +G + + +
Sbjct: 291 EDDLKSVFGQFGELVHVKIPA-----GKRCGFVQYANRACAEQALSVLNGTQLGGQSIRL 345
Query: 383 AVAQRKEERKARL-QAQFAQIRAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMP 441
+ + ++ + QAQ+ G P G Y + P P Y G G
Sbjct: 346 SWGRSPSNKQTQPDQAQYGGGGGYYGYPP--QGYEAYGYAPPPQDPNAYYGGYAGGGYGN 403
Query: 442 PQAAGYGFQQQ 452
Q G G+QQQ
Sbjct: 404 YQQPG-GYQQQ 413
Score = 216 (81.1 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 70/266 (26%), Positives = 124/266 (46%)
Query: 22 PSGYGNV-SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQ 80
P G + SL++GDL+ ++E+ L ++F + + +V R++ S GY ++ + N
Sbjct: 73 PGSAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHA 132
Query: 81 DAANAKEALNF--MPINGKPIRIMYSHRDPSIRKSGYG---NVFIKNLDTSIDNKALCDT 135
A + N MP + + R+ ++ R+ G VF+ +L + + L +T
Sbjct: 133 TAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTET 192
Query: 136 F-AAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVR 193
F A + +V KV D + G+SKGYGFV+F +E A+ +NG + + + G
Sbjct: 193 FKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAAN 252
Query: 194 RQERAQQNVSPKFT--NVYVNNLAETV-----TDEDLKK--IFGHFGTITSAIVMKDSDG 244
++ Q S + T N ++ T D+ + + + FG + +K G
Sbjct: 253 KKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAG 312
Query: 245 KSRCFGFVNFQSPDAAAAAVEKLNGT 270
K RC GFV + + A A+ LNGT
Sbjct: 313 K-RC-GFVQYANRACAEQALSVLNGT 336
Score = 138 (53.6 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 42/175 (24%), Positives = 82/175 (46%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQV-AQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKE 87
+++VGDL +V + L + F V + V +V D++ S GY +V +++ + A
Sbjct: 174 TVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMT 233
Query: 88 ALNFMPINGKPIRI-MYSHRDP-SIRKSGY----GN----------VFIKNLDTSIDNKA 131
+N + +P+R +++ P +++ + Y GN +F+ +D S+
Sbjct: 234 EMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDD 293
Query: 132 LCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQV 186
L F FG ++ K+ K GFVQ+ N A+ A+ +LNG + + +
Sbjct: 294 LKSVFGQFGELVHVKIPA-----GKRCGFVQYANRACAEQALSVLNGTQLGGQSI 343
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 182 (69.1 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 38/112 (33%), Positives = 63/112 (56%)
Query: 68 SLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSI 127
SLGY +VNY +DA A LN + + K I++ Y+ PS N+++ L ++
Sbjct: 84 SLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYAR--PSSESIKGANLYVSGLPKNL 141
Query: 128 DNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKMLNG 178
L FA+FG +++ ++ D+ +G SKG GF++F+ A+ AI+ LNG
Sbjct: 142 SQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNG 193
Score = 179 (68.1 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
Identities = 43/120 (35%), Positives = 66/120 (55%)
Query: 153 GQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVN 212
GQS GYGFV + E A+ A+ LNG+ + +K + V + R S K N+YV+
Sbjct: 82 GQSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVS-YARPSSE-----SIKGANLYVS 135
Query: 213 NLAETVTDEDLKKIFGHFGTI-TSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTT 271
L + ++ DL+ +F FG I TS I+ + G S+ GF+ F + A A+++LNG T
Sbjct: 136 GLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNGKT 195
Score = 179 (68.1 bits), Expect = 9.1e-11, P = 9.1e-11
Identities = 50/173 (28%), Positives = 86/173 (49%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEK 266
TN+ VN L +T+T E+++ +F G + S +++D + + + + A +
Sbjct: 26 TNLIVNYLPQTMTQEEMRSLFSSIGELESCKLVRDKVSGNLVLP-ASLTALNPALQQGQS 84
Query: 267 LN-GTTNNDKVWYVGRAQKRAEREADLRAKFEQERIS----RYEKLKGANLYLKNLDDSI 321
L G N + A+K LR + + ++S E +KGANLY+ L ++
Sbjct: 85 LGYGFVNYVRA---EDAEKAVNTLNGLRLQNKVIKVSYARPSSESIKGANLYVSGLPKNL 141
Query: 322 NDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGK 373
+ L+ +F+ FG I + +++ D G SKG GF F EA RA+ E+NGK
Sbjct: 142 SQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNGK 194
Score = 118 (46.6 bits), Expect = 0.00057, P = 0.00057
Identities = 39/147 (26%), Positives = 66/147 (44%)
Query: 52 AQVVSVRVCRDQSK--RSSLGYAYVNYSNPQDAANAKEALNFMPINGK----PIR--IMY 103
A+ ++V+ + S ++ + Y PQ AA + +P G+ P+ ++
Sbjct: 200 AEPITVKFANNPSNSAKAQIAPPLTAYLTPQAAAATRRLAGALPSAGRIRYSPLAGDLLA 259
Query: 104 SHRDPSIRKSGYG-NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFV 161
+ P +G G +F+ NL + L F FG V S KV D + KG+GFV
Sbjct: 260 NSILPGNAMTGSGWCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFV 319
Query: 162 QFENEEAAQNAIKMLNGMLINDKQVYV 188
N + A AI+ LNG + ++ + V
Sbjct: 320 TMTNYDEAVVAIQSLNGYTLGNRVLQV 346
Score = 114 (45.2 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKL 267
++V NLA + L ++FG FG + S V++D K + FGFV + D A A++ L
Sbjct: 275 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSL 334
Query: 268 NGTTNNDKVWYV 279
NG T ++V V
Sbjct: 335 NGYTLGNRVLQV 346
Score = 102 (41.0 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 25/78 (32%), Positives = 39/78 (50%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEM 370
+++ NL + L +LF FG + S KV+ D Q KG GF + +EA A+ +
Sbjct: 275 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSL 334
Query: 371 NGKMIGRKPLYVAVAQRK 388
NG +G + L V+ K
Sbjct: 335 NGYTLGNRVLQVSFKTNK 352
Score = 86 (35.3 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 20/83 (24%), Positives = 43/83 (51%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+LYV L +N+++ L +F+ ++++ R+ D S G ++ + +A A +
Sbjct: 131 NLYVSGLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQE 190
Query: 89 LNFMPING--KPIRIMYSHRDPS 109
LN G +PI + +++ +PS
Sbjct: 191 LNGKTPKGYAEPITVKFAN-NPS 212
Score = 81 (33.6 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 32/141 (22%), Positives = 66/141 (46%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNP--QD----- 81
+L V L Q + + ++ LFS + ++ S ++ RD+ + + A + NP Q
Sbjct: 27 NLIVNYLPQTMTQEEMRSLFSSIGELESCKLVRDKVSGNLVLPASLTALNPALQQGQSLG 86
Query: 82 --------AANAKEALNFMPINGKPIR---IMYSHRDPSIRKSGYGNVFIKNLDTSIDNK 130
A +A++A+N +NG ++ I S+ PS N+++ L ++
Sbjct: 87 YGFVNYVRAEDAEKAVN--TLNGLRLQNKVIKVSYARPSSESIKGANLYVSGLPKNLSQP 144
Query: 131 ALCDTFAAFGTVLSCKVAIDS 151
L FA+FG +++ ++ D+
Sbjct: 145 DLEGMFASFGKIITSRILCDN 165
>UNIPROTKB|H0YB86 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523636
Uniprot:H0YB86
Length = 165
Score = 233 (87.1 bits), Expect = 1.2e-18, P = 1.2e-18
Identities = 59/114 (51%), Positives = 74/114 (64%)
Query: 327 KELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386
KE FS FGTITS KVM++ G SKG GF FS PEEAT+A+ EMNG+++ KPLYVA+AQ
Sbjct: 3 KE-FSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 60
Query: 387 RKEERKARLQAQFAQ----IRA-PGGM-SPLASGIP-GYHHGA-PRLGPQQLYY 432
RKEER+A L Q+ Q +RA P + +P P GY A P+ + YY
Sbjct: 61 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY 114
Score = 152 (58.6 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 36/79 (45%), Positives = 48/79 (60%)
Query: 224 KKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQ 283
+K F FGTITSA VM + G+S+ FGFV F SP+ A AV ++NG K YV AQ
Sbjct: 2 RKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 60
Query: 284 KRAEREADLRAKFEQERIS 302
++ ER+A L ++ Q S
Sbjct: 61 RKEERQAHLTNQYMQRMAS 79
Score = 141 (54.7 bits), Expect = 9.8e-09, P = 9.8e-09
Identities = 32/80 (40%), Positives = 50/80 (62%)
Query: 136 FAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQ 195
F+ FGT+ S KV ++ G+SKG+GFV F + E A A+ +NG ++ K +YV L R++
Sbjct: 5 FSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 63
Query: 196 ERAQQNVSPKFTNVYVNNLA 215
ER Q ++ TN Y+ +A
Sbjct: 64 ER-QAHL----TNQYMQRMA 78
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 206 (77.6 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 48/160 (30%), Positives = 89/160 (55%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
S+YVG++ V E L ++F+ V S ++ R +SS Y +V+Y + + AA A +
Sbjct: 60 SVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKD--KSS--YGFVHYFDRRSAALAILS 115
Query: 89 LNFMPINGKPIRIMYSHRDPSIRK-SGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKV 147
LN + G+PI++ +++ S + N+F+ +L + + L +F+ F + +V
Sbjct: 116 LNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARV 175
Query: 148 AIDSN-GQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQV 186
D G+S+G+GFV F N++ AQ AI +NG ++ +Q+
Sbjct: 176 MWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQI 215
Score = 181 (68.8 bits), Expect = 8.9e-11, P = 8.9e-11
Identities = 68/231 (29%), Positives = 113/231 (48%)
Query: 107 DPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENE 166
DPS +S V++ N+ T + L + F + G V S K+ I + S YGFV + +
Sbjct: 54 DPSTCRS----VYVGNIHTQVTEPLLQEIFTSTGPVESSKL-IRKDKSS--YGFVHYFDR 106
Query: 167 EAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKI 226
+A AI LNG + + + V +R ++ S F N++V +L+ VTD L +
Sbjct: 107 RSAALAILSLNGRHLFGQPIKVNWAYATGQR--EDTSSHF-NIFVGDLSPEVTDATLYQS 163
Query: 227 FGHFGTITSAIVMKDSD-GKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKR 285
F F + + A VM D G+SR FGFV+F++ A A+ ++NG + + A K
Sbjct: 164 FSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKG 223
Query: 286 AEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTI 336
A D K + S E G++ ++ +++N+E E S+F T+
Sbjct: 224 ATSGDD---KLSSDGKSVVELTTGSS---EDGKETLNEET-PENNSQFTTV 267
Score = 131 (51.2 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 40/133 (30%), Positives = 65/133 (48%)
Query: 249 FGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLK 308
+GFV++ +AA A+ LNG + V A +RE D + F
Sbjct: 98 YGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWAYATGQRE-DTSSHF------------ 144
Query: 309 GANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRAL 367
N+++ +L + D L + FS F + + +VM DQ G S+G GF +F ++A A+
Sbjct: 145 --NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAI 202
Query: 368 NEMNGKMIGRKPL 380
NEMNGK + + +
Sbjct: 203 NEMNGKWLSSRQI 215
Score = 110 (43.8 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+++VGDL V ++ LY FS + RV DQ S G+ +V++ N QDA A
Sbjct: 145 NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 204
Query: 89 LNFMPINGKPIR 100
+N ++ + IR
Sbjct: 205 MNGKWLSSRQIR 216
Score = 91 (37.1 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 196 ERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQ 255
E +N S +FT VYV NLA VT DL + F G + ++ + + + FGFV +
Sbjct: 255 EETPENNS-QFTTVYVGNLAPEVTQLDLHRYFHALG---AGVIEEVRVQRDKGFGFVRYN 310
Query: 256 SPDAAAAAVEKLN 268
+ AA A++ N
Sbjct: 311 THPEAALAIQMGN 323
Score = 62 (26.9 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 113 SGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNA 172
S + V++ NL + L F A G + +V + + KG+GFV++ A A
Sbjct: 262 SQFTTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQ---RDKGFGFVRYNTHPEAALA 318
Query: 173 IKMLN 177
I+M N
Sbjct: 319 IQMGN 323
>DICTYBASE|DDB_G0292472 [details] [associations]
symbol:DDB_G0292472 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0292472 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000190 eggNOG:NOG321849 RefSeq:XP_629639.1
ProteinModelPortal:Q54D57 EnsemblProtists:DDB0184418 GeneID:8628703
KEGG:ddi:DDB_G0292472 InParanoid:Q54D57 OMA:ANINFAF Uniprot:Q54D57
Length = 550
Score = 199 (75.1 bits), Expect = 2.0e-18, Sum P(3) = 2.0e-18
Identities = 45/120 (37%), Positives = 66/120 (55%)
Query: 151 SNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVY 210
+N S GYGFV+F ++ A AI+ LNG ++ K + V Q + Q+ N+Y
Sbjct: 147 NNNSSLGYGFVKFSKKDEAAMAIEQLNGFEVDSKPLKVSY---AQASSSQSTH---ANLY 200
Query: 211 VNNLAETVTDEDLKKIFGHFGTITSAIVMKDSD-GKSRCFGFVNFQSPDAAAAAVEKLNG 269
+N L VT+ +LK++FG FG + ++ D D G SRC GFV+F A AV +NG
Sbjct: 201 INRLEPHVTNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQRREALKAVSSMNG 260
Score = 189 (71.6 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 48/172 (27%), Positives = 80/172 (46%)
Query: 62 DQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIK 121
+ + SSLGY +V +S +AA A E LN ++ KP+++ Y+ S +S + N++I
Sbjct: 145 NSNNNSSLGYGFVKFSKKDEAAMAIEQLNGFEVDSKPLKVSYAQASSS--QSTHANLYIN 202
Query: 122 NLDTSIDNKALCDTFAAFGTVLSCKVAIDSN-GQSKGYGFVQFENEEAAQNAIKMLNGML 180
L+ + N L + F +FG V+ K+ D + G S+ GFV F A A+ +NG
Sbjct: 203 RLEPHVTNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQRREALKAVSSMNGAN 262
Query: 181 I--NDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHF 230
I +YV + N + N NN ++ + G+F
Sbjct: 263 IPFQSTPIYVKFANQLSGNNNGNNNNNIINSNSNNNNNNNSNSNFNNNNGNF 314
Score = 184 (69.8 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 57/200 (28%), Positives = 96/200 (48%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVM----KDSDGKSRCFGFVNFQSPDAAAA 262
TN+ VNN+ +++ +LK +F FG I S ++ KD +G S +N S ++ +
Sbjct: 82 TNLIVNNIPKSMDSNELKSLFDKFGEIESCKIVFNRKKDGNGNSN----ININSNNSNGS 137
Query: 263 AVEKLNGTTNNDKVWYVGRAQKRAEREADLRAK----FEQE----RISRYEKLKG----A 310
N +NN+ G + + EA + + FE + ++S + A
Sbjct: 138 NSNNNNNNSNNNSSLGYGFVKFSKKDEAAMAIEQLNGFEVDSKPLKVSYAQASSSQSTHA 197
Query: 311 NLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNE 369
NLY+ L+ + + LKE+F FG + K++ D G S+ GF FS EA +A++
Sbjct: 198 NLYINRLEPHVTNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQRREALKAVSS 257
Query: 370 MNGKMIGRK--PLYVAVAQR 387
MNG I + P+YV A +
Sbjct: 258 MNGANIPFQSTPIYVKFANQ 277
Score = 75 (31.5 bits), Expect = 2.0e-18, Sum P(3) = 2.0e-18
Identities = 24/88 (27%), Positives = 36/88 (40%)
Query: 73 YVNYSNPQDAANAKEALNFMPINGKPIR-IMYSHRDPSIRKSGYGNVFIKNLDTSIDNKA 131
Y NY N + N N N + + +DP + N+ + N+ S+D+
Sbjct: 40 YNNYYNNNNNNNINNNNNNNSYNNENNNEFIEDLQDPDL--DALTNLIVNNIPKSMDSNE 97
Query: 132 LCDTFAAFGTVLSCKVAI----DSNGQS 155
L F FG + SCK+ D NG S
Sbjct: 98 LKSLFDKFGEIESCKIVFNRKKDGNGNS 125
Score = 67 (28.6 bits), Expect = 2.0e-18, Sum P(3) = 2.0e-18
Identities = 18/71 (25%), Positives = 38/71 (53%)
Query: 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMN 371
+++ NL ++I++ L +LF+ FG I+ +++ + G + + A+N +N
Sbjct: 454 IHISNLPNNIDETFLYKLFA-FGAISGVQLL------NNGQAIITYLDYQTVQNAINTLN 506
Query: 372 GKMIGRKPLYV 382
GK+I + L V
Sbjct: 507 GKIISGRSLKV 517
Score = 39 (18.8 bits), Expect = 1.5e-15, Sum P(3) = 1.5e-15
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 483 RRSGNTHQMQQPQFMRN--SNQGIRYLDNARNG 513
+ S H F N SN G Y +N NG
Sbjct: 349 KNSNGNHNNNGNNFNNNYNSNYGNMYNNNNNNG 381
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 243 (90.6 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 75/273 (27%), Positives = 128/273 (46%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+LYVG+L ++V E+ + LFSQ+ + ++ D + Y +V + + AA A A
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFYEHRHAAAALAA 65
Query: 89 LNFMPINGKPIRIMYS------HRDPSI-------RKSGYGNVFIKNLDTSIDNKALCDT 135
+N I GK +++ ++ +D S R + +VF+ +L I + +
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 136 FAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRR 194
FA FG + +V D + G+SKGYGFV F N+ A+NAI+ + G + +Q+ R+
Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
Query: 195 ----QERAQQNV------------SPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIV 238
+ + N SP VY + +T++ +++ F FG I V
Sbjct: 186 PPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRV 245
Query: 239 MKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTT 271
D + FV F S ++AA A+ +NGTT
Sbjct: 246 FPDKG-----YSFVRFNSHESAAHAIVSVNGTT 273
Score = 224 (83.9 bits), Expect = 5.4e-16, Sum P(2) = 5.4e-16
Identities = 67/273 (24%), Positives = 125/273 (45%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
+++ NL + + F+ G +CK+ +D+ G Y FV+F A A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAAAALAAMN 67
Query: 178 GMLINDKQVYVGLFV----RRQERAQQNV-----SPKFTNVYVNNLAETVTDEDLKKIFG 228
G I K+V V ++++ + V S +V+V +L+ +T ED+K F
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 229 HFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKV----WYVGRAQ 283
FG I+ A V+KD + GKS+ +GFV+F + A A++++ G + W +
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 284 K-RAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVM 342
++ E++ + + + + +Y + + ++ +++ FS FG I +V
Sbjct: 188 APKSTYESNTK-QLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF 246
Query: 343 VDQHGFSKGSGFAAFSMPEEATRALNEMNGKMI 375
D KG F F+ E A A+ +NG I
Sbjct: 247 PD-----KGYSFVRFNSHESAAHAIVSVNGTTI 274
Score = 165 (63.1 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 51/186 (27%), Positives = 87/186 (46%)
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAA 263
PK +YV NL+ VT+ + ++F G + ++ D+ G + FV F AAAA
Sbjct: 6 PK--TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAAAA 62
Query: 264 VEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIND 323
+ +NG K V A + ++ D + +S ++++ +L I
Sbjct: 63 LAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTV---VSTQRSQDHFHVFVGDLSPEITT 119
Query: 324 EKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYV 382
E +K F+ FG I+ +V+ D G SKG GF +F +A A+ +M G+ +G + +
Sbjct: 120 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 179
Query: 383 AVAQRK 388
A RK
Sbjct: 180 NWATRK 185
Score = 147 (56.8 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 45/167 (26%), Positives = 74/167 (44%)
Query: 30 LYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL 89
++VGDL + + F+ ++ RV +D + S GY +V++ N DA NA + +
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 90 NFMPINGKPIRIMYSHRDPSIRKSGY-GNVFIKNLDTSIDNKALCDTFAAFGTVLS---- 144
+ G+ IR ++ R P KS Y N + D ++ + + G V S
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227
Query: 145 --CKVAIDSNGQ--------SKGYGFVQFENEEAAQNAIKMLNGMLI 181
+ GQ KGY FV+F + E+A +AI +NG I
Sbjct: 228 QLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTI 274
Score = 43 (20.2 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 438 GLMPPQAAGYGFQQQVFPGLRPGG 461
G+ PP G Q V PG R G
Sbjct: 359 GVQPPPGPGGTMTQSVEPGPREKG 382
>UNIPROTKB|Q7ZWM3 [details] [associations]
symbol:tnrc4-b "CUGBP Elav-like family member 3-B"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 EMBL:BC046942 RefSeq:NP_001080695.1
UniGene:Xl.12160 ProteinModelPortal:Q7ZWM3 SMR:Q7ZWM3 GeneID:380387
KEGG:xla:380387 CTD:380387 Xenbase:XB-GENE-5796640 Uniprot:Q7ZWM3
Length = 462
Score = 153 (58.9 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 41/154 (26%), Positives = 74/154 (48%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKE 87
+ L++G + +N++E L +F Q ++ + V +D+ G A++ Y + A A+
Sbjct: 7 IKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQS 66
Query: 88 ALN---FMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS 144
AL+ +P +PI++ + D R +F+ L ++ + F FG +
Sbjct: 67 ALHEQKTLPGMNRPIQVKPA--DSESRGEDR-KLFVGMLGKQQTDEDVRRMFETFGNIDE 123
Query: 145 CKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNG 178
C V +G SKG FV+F+ AQ AI L+G
Sbjct: 124 CTVLRGPDGTSKGCAFVKFQTHTEAQAAINALHG 157
Score = 153 (58.9 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 64/266 (24%), Positives = 102/266 (38%)
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAA 262
P +++ + + ++DLK IF FG I V+KD G + F+ + + ++A
Sbjct: 4 PDAIKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALK 63
Query: 263 AVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
A L+ ++ G + + AD ++ E + L++ L
Sbjct: 64 AQSALH-----EQKTLPGMNRPIQVKPADSESRGEDRK-----------LFVGMLGKQQT 107
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMI---GRKP 379
DE ++ +F FG I C V+ G SKG F F EA A+N ++G
Sbjct: 108 DEDVRRMFETFGNIDECTVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSS 167
Query: 380 LYVAVAQRKEERKARLQAQFAQIRAPGGMSPLASGIPGY----HHGAPRLGPQQLYYGQG 435
L V A ++ER R Q A G SP+A Y + +L QQ
Sbjct: 168 LVVKFADTEKERGLRRMQQVAN--QLGMFSPIALQFGAYSAYTQAVSDQLMQQQAALVAA 225
Query: 436 TPGLMPPQAAGYGFQQQVFPGLRPGG 461
+ P A Q Q + P G
Sbjct: 226 QSAYLNPMATMAAVQMQQMATINPNG 251
Score = 148 (57.2 bits), Expect = 2.9e-16, Sum P(2) = 2.9e-16
Identities = 44/155 (28%), Positives = 74/155 (47%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKML 176
+FI + ++D K L F FG + V D G KG F+ + E+A A L
Sbjct: 9 LFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSAL 68
Query: 177 NGMLINDKQVYVGLFVRRQERAQQNVSP-KFTNVYVNNLAETVTDEDLKKIFGHFGTITS 235
+ +++ G+ Q + + S + ++V L + TDED++++F FG I
Sbjct: 69 H-----EQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFETFGNIDE 123
Query: 236 AIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGT 270
V++ DG S+ FV FQ+ A AA+ L+G+
Sbjct: 124 CTVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGS 158
Score = 147 (56.8 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 27/75 (36%), Positives = 49/75 (65%)
Query: 196 ERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNF 254
++ QQ P+ N+++ +L + TD ++ ++F FG + SA V D + +S+CFGFV+F
Sbjct: 366 QQQQQREGPEGCNIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSF 425
Query: 255 QSPDAAAAAVEKLNG 269
+P +A AA++ +NG
Sbjct: 426 DNPGSAQAAIQSMNG 440
Score = 134 (52.2 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKM 175
N+FI +L + + F FG V+S KV +D + QSK +GFV F+N +AQ AI+
Sbjct: 378 NIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQS 437
Query: 176 LNGMLINDKQVYVGL 190
+NG I K++ V L
Sbjct: 438 MNGFQIGMKRLKVQL 452
Score = 133 (51.9 bits), Expect = 8.0e-17, Sum P(2) = 8.0e-17
Identities = 32/96 (33%), Positives = 51/96 (53%)
Query: 298 QERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAA 356
Q++ R E +G N+++ +L D ++ ++F FG + S KV VD+ SK GF +
Sbjct: 366 QQQQQR-EGPEGCNIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVS 424
Query: 357 FSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERK 392
F P A A+ MNG IG K L V + + K+ +
Sbjct: 425 FDNPGSAQAAIQSMNGFQIGMKRLKVQLKRPKDANR 460
>WB|WBGene00001340 [details] [associations]
symbol:etr-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040002 "collagen and
cuticulin-based cuticle development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0061199 "striated muscle contraction involved in
embryonic body morphogenesis" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008340
GO:GO:0009792 GO:GO:0018991 GO:GO:0006915 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003676 GO:GO:0040002 KO:K13207
HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837 EMBL:FO081419
UniGene:Cel.5079 GeneID:173401 KEGG:cel:CELE_T01D1.2
UCSC:T01D1.2a.1 CTD:173401 NextBio:879497 RefSeq:NP_001122631.1
ProteinModelPortal:A8DYS0 SMR:A8DYS0 IntAct:A8DYS0 STRING:A8DYS0
EnsemblMetazoa:T01D1.2f.1 EnsemblMetazoa:T01D1.2f.2
EnsemblMetazoa:T01D1.2f.3 EnsemblMetazoa:T01D1.2f.4
EnsemblMetazoa:T01D1.2f.5 EnsemblMetazoa:T01D1.2f.6
WormBase:T01D1.2f InParanoid:A8DYS0 ArrayExpress:A8DYS0
Uniprot:A8DYS0
Length = 588
Score = 173 (66.0 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
Identities = 45/151 (29%), Positives = 72/151 (47%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKE 87
+ ++VG + + NE+ LF + V S + RD+S ++S G +V + + +DA A+
Sbjct: 55 IKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQG 114
Query: 88 AL-NFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCK 146
AL N I G + D R +FI L + + L + FA FG + C
Sbjct: 115 ALHNIKVIEGMHHPVQMKPADTENRNER--KLFIGQLSKKHNEENLREIFAKFGHIEDCS 172
Query: 147 VAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
V D +G+S+G FV F N A A K ++
Sbjct: 173 VLRDQDGKSRGCAFVTFTNRSCAVVATKEMH 203
Score = 149 (57.5 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 35/79 (44%), Positives = 47/79 (59%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
N+FI +L + L +TFA FG +LS KV ID SK +GFV +EN ++A NAI
Sbjct: 504 NLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISA 563
Query: 176 LNGMLINDKQVYVGLFVRR 194
+NG I K++ V L V R
Sbjct: 564 MNGFQIGSKRLKVQLKVDR 582
Score = 129 (50.5 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
Identities = 30/75 (40%), Positives = 41/75 (54%)
Query: 309 GANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRAL 367
GANL++ +L D L F+ FG I S KV +D+ SK GF ++ + AT A+
Sbjct: 502 GANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAI 561
Query: 368 NEMNGKMIGRKPLYV 382
+ MNG IG K L V
Sbjct: 562 SAMNGFQIGSKRLKV 576
Score = 128 (50.1 bits), Expect = 0.00010, P = 0.00010
Identities = 58/229 (25%), Positives = 99/229 (43%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLN 268
++V + + D +++F +G++ S +++D ++ G F + A+E
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASK-GCC-FVTFYHRKDAIEA-Q 113
Query: 269 GTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKE 328
G +N KV G + AD + E++ L++ L N+E L+E
Sbjct: 114 GALHNIKV-IEGMHHPVQMKPADTENRNERK------------LFIGQLSKKHNEENLRE 160
Query: 329 LFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGK--MIG-RKPLYVAVA 385
+F++FG I C V+ DQ G S+G F F+ A A EM+ M G PL V A
Sbjct: 161 IFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCSAPLVVKFA 220
Query: 386 QRKEERKARLQAQFAQIRAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQ 434
++++ + ++ I G SP + P L QQL GQ
Sbjct: 221 DTQKDKDVKTKSM---ITGSGAGSPKGGAASLLQNLNPAL-LQQLGGGQ 265
Score = 111 (44.1 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAA 262
P N+++ +L + D DL F FG I SA V D S+CFGFV++++ +A
Sbjct: 500 PDGANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATN 559
Query: 263 AVEKLNG 269
A+ +NG
Sbjct: 560 AISAMNG 566
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 245 (91.3 bits), Expect = 3.2e-18, P = 3.2e-18
Identities = 84/326 (25%), Positives = 147/326 (45%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
+++I +L +D + FA G S KV + GQS+GYGF++F + A+ ++
Sbjct: 61 SLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQT 120
Query: 176 LNGM-LINDKQVYVGLFVRRQ--ERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGH-FG 231
NG + + +Q + + + E+ Q P T ++V +LA VTD L F + +G
Sbjct: 121 YNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHT-IFVGDLAPEVTDYMLSDTFKNVYG 179
Query: 232 TITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVG-RAQKRAERE 289
++ A V+ D + G+S+ +GFV F + A+ ++NG + + +G A K A
Sbjct: 180 SVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNALPM 239
Query: 290 ADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFS 349
+ Q + +++ LD ++ D++LK +F +FG + K+
Sbjct: 240 QPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPP-----G 294
Query: 350 KGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRAPG--G 407
K GF ++ A AL+ +NG +G + + ++ R Q+ AQ G G
Sbjct: 295 KRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWG-----RSPNKQSDQAQWNGGGYYG 349
Query: 408 MSPLASGIPGYHHGAPRLGPQQLYYG 433
P G GY P P YYG
Sbjct: 350 YPPQPQGGYGYAAQPPTQDPNA-YYG 374
Score = 201 (75.8 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
Identities = 67/272 (24%), Positives = 123/272 (45%)
Query: 22 PSGYGNV-SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQ 80
P +V SL++GDL+Q ++E+ + +F+Q + S +V R++ S GY ++ + +
Sbjct: 53 PGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHS 112
Query: 81 DAANAKEALNF--MPINGKPIRIMYSHR---DPSIRKSGYGN-VFIKNLDTSIDNKALCD 134
A + N MP + R+ ++ + + G + +F+ +L + + L D
Sbjct: 113 VAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSD 172
Query: 135 TFA-AFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFV 192
TF +G+V KV +D + G+SKGYGFV+F +E A+ +NG + + + +G
Sbjct: 173 TFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIG--- 229
Query: 193 RRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIV---MKDSDGK---- 245
A +N P +Y N D D G + + + +K G+
Sbjct: 230 ---PAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGEL 286
Query: 246 -------SRCFGFVNFQSPDAAAAAVEKLNGT 270
+ GFV + + +A A+ LNGT
Sbjct: 287 LHVKIPPGKRCGFVQYANKASAEHALSVLNGT 318
Score = 144 (55.7 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 48/194 (24%), Positives = 93/194 (47%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQV-AQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKE 87
+++VGDL V + L D F V V +V D++ S GY +V +++ + A
Sbjct: 155 TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMT 214
Query: 88 ALNFMPINGKPIRI-MYSHRD-----PSIRKSGYG-----------NVFIKNLDTSIDNK 130
+N + +P+RI ++++ P++ ++ G +F+ LD ++ +
Sbjct: 215 EMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDD 274
Query: 131 ALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYV-- 188
L F FG +L K+ K GFVQ+ N+ +A++A+ +LNG + + + +
Sbjct: 275 ELKSIFGQFGELLHVKIP-----PGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSW 329
Query: 189 GLFVRRQ-ERAQQN 201
G +Q ++AQ N
Sbjct: 330 GRSPNKQSDQAQWN 343
Score = 42 (19.8 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
Identities = 16/49 (32%), Positives = 18/49 (36%)
Query: 428 QQLYYGQGTPGLMPPQAAGYGFQQQV---FPGLRPGGPNYIMPYHLQRQ 473
Q + G G G P GYG+ Q P GG Y QRQ
Sbjct: 339 QAQWNGGGYYGYPPQPQGGYGYAAQPPTQDPNAYYGGYTGYGNYQQQRQ 387
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 228 (85.3 bits), Expect = 4.1e-18, P = 4.1e-18
Identities = 64/232 (27%), Positives = 112/232 (48%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+LYVG+L ++V E+ + LFSQ+ + ++ D + Y +V + + AA A A
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAAALAA 65
Query: 89 LNFMPINGKPIRIMYSHRDPSIRK--SGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCK 146
+N I GK +++ ++ S +K S + +VF+ +L I + + FA FG + +
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDAR 125
Query: 147 VAID-SNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRR----QERAQQN 201
V D + G+SKGYGFV F N+ A+NAI+ + G + +Q+ R+ + + N
Sbjct: 126 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESN 185
Query: 202 V------------SPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD 241
SP VY + +T++ +++ F FG I V D
Sbjct: 186 TKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD 237
Score = 166 (63.5 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 76/294 (25%), Positives = 124/294 (42%)
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAA 263
PK +YV NL+ VT+ + ++F G + ++ D+ G + FV F AAAA
Sbjct: 6 PK--TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAA 62
Query: 264 VEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIND 323
+ +NG K V A + ++ D F ++++ +L I
Sbjct: 63 LAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHF--------------HVFVGDLSPEITT 108
Query: 324 EKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYV 382
E +K F+ FG I+ +V+ D G SKG GF +F +A A+ +M G+ +G + +
Sbjct: 109 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 168
Query: 383 AVAQRKEER-KARLQAQFAQI---RAPGGMSPLASGI--PGYHHGAPRLGPQQLY--YGQ 434
A RK K+ ++ Q+ SP + G G +Q + +GQ
Sbjct: 169 NWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQ 228
Query: 435 GTPGLMPPQAAGYGFQQQVFPGLRPGGPNY-IMPYHLQR-QVHPGQRTGVRRSG 486
+ P GY F +Q GPNY + P Q + P Q +G R +G
Sbjct: 229 IMEIRVFPDK-GYSFVRQTQSSAPWMGPNYGVQPPQGQNGSMLPNQPSGYRVAG 281
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 244 (91.0 bits), Expect = 4.2e-18, P = 4.2e-18
Identities = 75/273 (27%), Positives = 128/273 (46%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+LYVG+L ++V E+ + LFSQ+ + ++ D + Y +V + + AA A A
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAAALAA 65
Query: 89 LNFMPINGKPIRIMYS------HRDPSI-------RKSGYGNVFIKNLDTSIDNKALCDT 135
+N I GK +++ ++ +D S R + +VF+ +L I + +
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 136 FAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRR 194
FA FG + +V D + G+SKGYGFV F N+ A+NAI+ + G + +Q+ R+
Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
Query: 195 ----QERAQQNV------------SPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIV 238
+ + N SP VY + +T++ +++ F FG I V
Sbjct: 186 PPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRV 245
Query: 239 MKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTT 271
D + FV F S ++AA A+ +NGTT
Sbjct: 246 FPDKG-----YSFVRFNSHESAAHAIVSVNGTT 273
Score = 236 (88.1 bits), Expect = 3.7e-17, P = 3.7e-17
Identities = 100/391 (25%), Positives = 169/391 (43%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
+++ NL + + F+ G +CK+ +D+ G Y FV+F A A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 178 GMLINDKQVYVGLFV----RRQERAQQNV-----SPKFTNVYVNNLAETVTDEDLKKIFG 228
G I K+V V ++++ + V S +V+V +L+ +T ED+K F
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 229 HFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKV----WYVGRAQ 283
FG I+ A V+KD + GKS+ +GFV+F + A A++++ G + W +
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 284 K-RAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVM 342
++ E++ + + + + +Y + + ++ +++ FS FG I +V
Sbjct: 188 APKSTYESNTK-QLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF 246
Query: 343 VDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQI 402
D KG F F+ E A A+ +NG I + V KE Q QI
Sbjct: 247 PD-----KGYSFVRFNSHESAAHAIVSVNGTTI--EGHVVKCYWGKETLDMINPVQQNQI 299
Query: 403 RAPGGMSPLASGIPGYHHG-APRLGPQQLYYGQGTPGL-MPPQA---AGYGFQQQVFPGL 457
P P G G +G A ++G Q + G P M QA G+ Q P +
Sbjct: 300 GYP---QPY--GQWGQWYGNAQQIG-QYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWM 353
Query: 458 RPGGPNY-IMPYHLQR-QVHPGQRTGVRRSG 486
GPNY + P Q + P Q +G R +G
Sbjct: 354 ---GPNYGVQPPQGQNGSMLPNQPSGYRVAG 381
Score = 166 (63.5 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 51/186 (27%), Positives = 87/186 (46%)
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAA 263
PK +YV NL+ VT+ + ++F G + ++ D+ G + FV F AAAA
Sbjct: 6 PK--TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAA 62
Query: 264 VEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIND 323
+ +NG K V A + ++ D + +S ++++ +L I
Sbjct: 63 LAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTV---VSTQRSQDHFHVFVGDLSPEITT 119
Query: 324 EKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYV 382
E +K F+ FG I+ +V+ D G SKG GF +F +A A+ +M G+ +G + +
Sbjct: 120 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 179
Query: 383 AVAQRK 388
A RK
Sbjct: 180 NWATRK 185
Score = 147 (56.8 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 45/167 (26%), Positives = 74/167 (44%)
Query: 30 LYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL 89
++VGDL + + F+ ++ RV +D + S GY +V++ N DA NA + +
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 90 NFMPINGKPIRIMYSHRDPSIRKSGY-GNVFIKNLDTSIDNKALCDTFAAFGTVLS---- 144
+ G+ IR ++ R P KS Y N + D ++ + + G V S
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227
Query: 145 --CKVAIDSNGQ--------SKGYGFVQFENEEAAQNAIKMLNGMLI 181
+ GQ KGY FV+F + E+A +AI +NG I
Sbjct: 228 QLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTI 274
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 244 (91.0 bits), Expect = 4.2e-18, P = 4.2e-18
Identities = 75/273 (27%), Positives = 128/273 (46%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+LYVG+L ++V E+ + LFSQ+ + ++ D + Y +V + + AA A A
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAAALAA 65
Query: 89 LNFMPINGKPIRIMYS------HRDPSI-------RKSGYGNVFIKNLDTSIDNKALCDT 135
+N I GK +++ ++ +D S R + +VF+ +L I + +
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 136 FAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRR 194
FA FG + +V D + G+SKGYGFV F N+ A+NAI+ + G + +Q+ R+
Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
Query: 195 ----QERAQQNV------------SPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIV 238
+ + N SP VY + +T++ +++ F FG I V
Sbjct: 186 PPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRV 245
Query: 239 MKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTT 271
D + FV F S ++AA A+ +NGTT
Sbjct: 246 FPDKG-----YSFVRFNSHESAAHAIVSVNGTT 273
Score = 234 (87.4 bits), Expect = 6.3e-17, P = 6.3e-17
Identities = 98/391 (25%), Positives = 170/391 (43%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
+++ NL + + F+ G +CK+ +D+ G Y FV+F A A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 178 GMLINDKQVYVGLFV----RRQERAQQNV-----SPKFTNVYVNNLAETVTDEDLKKIFG 228
G I K+V V ++++ + V S +V+V +L+ +T ED+K F
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 229 HFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKV----WYVGRAQ 283
FG I+ A V+KD + GKS+ +GFV+F + A A++++ G + W +
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 284 K-RAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVM 342
++ E++ + + + + +Y + + ++ +++ FS FG I +V
Sbjct: 188 APKSTYESNTK-QLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF 246
Query: 343 VDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQI 402
D KG F F+ E A A+ +NG I + + + +Q Q QI
Sbjct: 247 PD-----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQ-NQI 300
Query: 403 RAPGGMSPLASGIPGYHHG-APRLGPQQLYYGQGTPGL-MPPQA---AGYGFQQQVFPGL 457
P P G G +G A ++G Q + G P M QA G+ Q P +
Sbjct: 301 GYP---QPY--GQWGQWYGNAQQIG-QYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWM 354
Query: 458 RPGGPNY-IMPYHLQR-QVHPGQRTGVRRSG 486
GPNY + P Q + P Q +G R +G
Sbjct: 355 ---GPNYGVQPPQGQNGSMLPNQPSGYRVAG 382
Score = 166 (63.5 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 51/186 (27%), Positives = 87/186 (46%)
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAA 263
PK +YV NL+ VT+ + ++F G + ++ D+ G + FV F AAAA
Sbjct: 6 PK--TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAA 62
Query: 264 VEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIND 323
+ +NG K V A + ++ D + +S ++++ +L I
Sbjct: 63 LAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTV---VSTQRSQDHFHVFVGDLSPEITT 119
Query: 324 EKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYV 382
E +K F+ FG I+ +V+ D G SKG GF +F +A A+ +M G+ +G + +
Sbjct: 120 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 179
Query: 383 AVAQRK 388
A RK
Sbjct: 180 NWATRK 185
Score = 147 (56.8 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 45/167 (26%), Positives = 74/167 (44%)
Query: 30 LYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL 89
++VGDL + + F+ ++ RV +D + S GY +V++ N DA NA + +
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 90 NFMPINGKPIRIMYSHRDPSIRKSGY-GNVFIKNLDTSIDNKALCDTFAAFGTVLS---- 144
+ G+ IR ++ R P KS Y N + D ++ + + G V S
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227
Query: 145 --CKVAIDSNGQ--------SKGYGFVQFENEEAAQNAIKMLNGMLI 181
+ GQ KGY FV+F + E+A +AI +NG I
Sbjct: 228 QLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTI 274
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 244 (91.0 bits), Expect = 4.2e-18, P = 4.2e-18
Identities = 75/273 (27%), Positives = 128/273 (46%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+LYVG+L ++V E+ + LFSQ+ + ++ D + Y +V + + AA A A
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAAALAA 65
Query: 89 LNFMPINGKPIRIMYS------HRDPSI-------RKSGYGNVFIKNLDTSIDNKALCDT 135
+N I GK +++ ++ +D S R + +VF+ +L I + +
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 136 FAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRR 194
FA FG + +V D + G+SKGYGFV F N+ A+NAI+ + G + +Q+ R+
Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
Query: 195 ----QERAQQNV------------SPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIV 238
+ + N SP VY + +T++ +++ F FG I V
Sbjct: 186 PPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRV 245
Query: 239 MKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTT 271
D + FV F S ++AA A+ +NGTT
Sbjct: 246 FPDKG-----YSFVRFSSHESAAHAIVSVNGTT 273
Score = 236 (88.1 bits), Expect = 3.7e-17, P = 3.7e-17
Identities = 101/393 (25%), Positives = 168/393 (42%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
+++ NL + + F+ G +CK+ +D+ G Y FV+F A A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 178 GMLINDKQVYVGLFV----RRQERAQQNV-----SPKFTNVYVNNLAETVTDEDLKKIFG 228
G I K+V V ++++ + V S +V+V +L+ +T ED+K F
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 229 HFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKV----WYVGRAQ 283
FG I+ A V+KD + GKS+ +GFV+F + A A++++ G + W +
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 284 K-RAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVM 342
++ E++ + E +S+ +Y + + ++ +++ FS FG I +V
Sbjct: 188 APKSTYESNTKQLSYDEVVSQSSP-NNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF 246
Query: 343 VDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQI 402
D KG F FS E A A+ +NG I + + + +Q Q QI
Sbjct: 247 PD-----KGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQ-NQI 300
Query: 403 RAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTP-GLMPPQAAGYG--FQQQVFPGLRP 459
G P G G +G QQ+ GQ P G P YG + QQ F +
Sbjct: 301 ----GYPP-TYGQWGQWYG----NAQQI--GQYVPNGWQVPAYGVYGQPWSQQGFNQTQS 349
Query: 460 G----GPNYIMP--YHLQRQVHPGQRTGVRRSG 486
GPNY +P + P Q G R +G
Sbjct: 350 SAPWMGPNYSVPPPQGQNGSMLPSQPAGYRVAG 382
Score = 166 (63.5 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 51/186 (27%), Positives = 87/186 (46%)
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAA 263
PK +YV NL+ VT+ + ++F G + ++ D+ G + FV F AAAA
Sbjct: 6 PK--TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAA 62
Query: 264 VEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIND 323
+ +NG K V A + ++ D + +S ++++ +L I
Sbjct: 63 LAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTV---VSTQRSQDHFHVFVGDLSPEITT 119
Query: 324 EKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYV 382
E +K F+ FG I+ +V+ D G SKG GF +F +A A+ +M G+ +G + +
Sbjct: 120 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 179
Query: 383 AVAQRK 388
A RK
Sbjct: 180 NWATRK 185
Score = 144 (55.7 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 45/167 (26%), Positives = 73/167 (43%)
Query: 30 LYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL 89
++VGDL + + F+ ++ RV +D + S GY +V++ N DA NA + +
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 90 NFMPINGKPIRIMYSHRDPSIRKSGY-GNVFIKNLDTSIDNKALCDTFAAFGTVLS---- 144
+ G+ IR ++ R P KS Y N + D + + + G V S
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTE 227
Query: 145 --CKVAIDSNGQ--------SKGYGFVQFENEEAAQNAIKMLNGMLI 181
+ GQ KGY FV+F + E+A +AI +NG I
Sbjct: 228 QLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTI 274
>UNIPROTKB|Q91579 [details] [associations]
symbol:tnrc4-a "CUGBP Elav-like family member 3-A"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:U16800 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BC057704 EMBL:BC072134
RefSeq:NP_001079936.1 UniGene:Xl.986 HSSP:Q92879
ProteinModelPortal:Q91579 SMR:Q91579 GeneID:379627 KEGG:xla:379627
CTD:379627 Xenbase:XB-GENE-6255196 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 Uniprot:Q91579
Length = 462
Score = 152 (58.6 bits), Expect = 4.6e-18, Sum P(2) = 4.6e-18
Identities = 41/154 (26%), Positives = 74/154 (48%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKE 87
+ L++G + +N++E L +F Q ++ + V +D+ G A++ Y + A A+
Sbjct: 7 IKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQS 66
Query: 88 ALN---FMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS 144
AL+ +P +PI++ + D R +F+ L ++ + F FG +
Sbjct: 67 ALHEQKTLPGMNRPIQVKPA--DSESRGEDR-KLFVGMLGKQQTDEDVRRMFEPFGNIDE 123
Query: 145 CKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNG 178
C V +G SKG FV+F+ AQ AI L+G
Sbjct: 124 CTVLRGPDGTSKGCAFVKFQTHTEAQAAINALHG 157
Score = 152 (58.6 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 64/266 (24%), Positives = 102/266 (38%)
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAA 262
P +++ + + ++DLK IF FG I V+KD G + F+ + + ++A
Sbjct: 4 PDAIKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALK 63
Query: 263 AVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
A L+ ++ G + + AD ++ E + L++ L
Sbjct: 64 AQSALH-----EQKTLPGMNRPIQVKPADSESRGEDRK-----------LFVGMLGKQQT 107
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMI---GRKP 379
DE ++ +F FG I C V+ G SKG F F EA A+N ++G
Sbjct: 108 DEDVRRMFEPFGNIDECTVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSS 167
Query: 380 LYVAVAQRKEERKARLQAQFAQIRAPGGMSPLASGIPGY----HHGAPRLGPQQLYYGQG 435
L V A ++ER R Q A G SP+A Y + +L QQ
Sbjct: 168 LVVKFADTEKERGLRRMQQVAN--QLGMFSPIALQFGAYSAYTQAVSDQLMQQQAALVAA 225
Query: 436 TPGLMPPQAAGYGFQQQVFPGLRPGG 461
+ P A Q Q + P G
Sbjct: 226 HSAYLNPMATMAAVQMQQMATINPNG 251
Score = 148 (57.2 bits), Expect = 2.9e-16, Sum P(2) = 2.9e-16
Identities = 44/155 (28%), Positives = 74/155 (47%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKML 176
+FI + ++D K L F FG + V D G KG F+ + E+A A L
Sbjct: 9 LFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSAL 68
Query: 177 NGMLINDKQVYVGLFVRRQERAQQNVSP-KFTNVYVNNLAETVTDEDLKKIFGHFGTITS 235
+ +++ G+ Q + + S + ++V L + TDED++++F FG I
Sbjct: 69 H-----EQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFEPFGNIDE 123
Query: 236 AIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGT 270
V++ DG S+ FV FQ+ A AA+ L+G+
Sbjct: 124 CTVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGS 158
Score = 146 (56.5 bits), Expect = 4.6e-18, Sum P(2) = 4.6e-18
Identities = 27/75 (36%), Positives = 49/75 (65%)
Query: 196 ERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNF 254
++ QQ P+ N+++ +L + TD ++ ++F FG + SA V D + +S+CFGFV+F
Sbjct: 366 QQQQQREGPEGCNIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSF 425
Query: 255 QSPDAAAAAVEKLNG 269
+P +A AA++ +NG
Sbjct: 426 DNPGSAQAAIQAMNG 440
Score = 134 (52.2 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKM 175
N+FI +L + + F FG V+S KV +D + QSK +GFV F+N +AQ AI+
Sbjct: 378 NIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQA 437
Query: 176 LNGMLINDKQVYVGL 190
+NG I K++ V L
Sbjct: 438 MNGFQIGMKRLKVQL 452
Score = 133 (51.9 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 34/104 (32%), Positives = 55/104 (52%)
Query: 290 ADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GF 348
A L+ + Q++ R E +G N+++ +L D ++ ++F FG + S KV VD+
Sbjct: 358 AILQQQPPQQQQQR-EGPEGCNIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQ 416
Query: 349 SKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERK 392
SK GF +F P A A+ MNG IG K L V + + K+ +
Sbjct: 417 SKCFGFVSFDNPGSAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 460
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 243 (90.6 bits), Expect = 5.3e-18, P = 5.3e-18
Identities = 75/273 (27%), Positives = 128/273 (46%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+LYVG+L ++V E+ + LFSQ+ + ++ D + Y +V + + AA A A
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFYEHRHAAAALAA 65
Query: 89 LNFMPINGKPIRIMYS------HRDPSI-------RKSGYGNVFIKNLDTSIDNKALCDT 135
+N I GK +++ ++ +D S R + +VF+ +L I + +
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 136 FAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRR 194
FA FG + +V D + G+SKGYGFV F N+ A+NAI+ + G + +Q+ R+
Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
Query: 195 ----QERAQQNV------------SPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIV 238
+ + N SP VY + +T++ +++ F FG I V
Sbjct: 186 PPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRV 245
Query: 239 MKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTT 271
D + FV F S ++AA A+ +NGTT
Sbjct: 246 FPDKG-----YSFVRFNSHESAAHAIVSVNGTT 273
Score = 233 (87.1 bits), Expect = 8.1e-17, P = 8.1e-17
Identities = 98/391 (25%), Positives = 170/391 (43%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
+++ NL + + F+ G +CK+ +D+ G Y FV+F A A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAAAALAAMN 67
Query: 178 GMLINDKQVYVGLFV----RRQERAQQNV-----SPKFTNVYVNNLAETVTDEDLKKIFG 228
G I K+V V ++++ + V S +V+V +L+ +T ED+K F
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 229 HFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKV----WYVGRAQ 283
FG I+ A V+KD + GKS+ +GFV+F + A A++++ G + W +
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 284 K-RAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVM 342
++ E++ + + + + +Y + + ++ +++ FS FG I +V
Sbjct: 188 APKSTYESNTK-QLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF 246
Query: 343 VDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQI 402
D KG F F+ E A A+ +NG I + + + +Q Q QI
Sbjct: 247 PD-----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQ-NQI 300
Query: 403 RAPGGMSPLASGIPGYHHG-APRLGPQQLYYGQGTP--GL--MPPQAAGYGFQQQVFPGL 457
G P A G G +G A ++G Q + G P G+ P G+ Q P +
Sbjct: 301 ----GY-PQAYGQWGQWYGNAQQIG-QYMPNGWQVPAYGMYGQPWNQQGFNQTQSSPPWM 354
Query: 458 RPGGPNY-IMPYHLQR-QVHPGQRTGVRRSG 486
GPNY + P Q + P Q G R +G
Sbjct: 355 ---GPNYGVQPPPGQNGSMMPNQPAGYRVAG 382
Score = 165 (63.1 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 51/186 (27%), Positives = 87/186 (46%)
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAA 263
PK +YV NL+ VT+ + ++F G + ++ D+ G + FV F AAAA
Sbjct: 6 PK--TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAAAA 62
Query: 264 VEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIND 323
+ +NG K V A + ++ D + +S ++++ +L I
Sbjct: 63 LAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTV---VSTQRSQDHFHVFVGDLSPEITT 119
Query: 324 EKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYV 382
E +K F+ FG I+ +V+ D G SKG GF +F +A A+ +M G+ +G + +
Sbjct: 120 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 179
Query: 383 AVAQRK 388
A RK
Sbjct: 180 NWATRK 185
Score = 147 (56.8 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 45/167 (26%), Positives = 74/167 (44%)
Query: 30 LYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL 89
++VGDL + + F+ ++ RV +D + S GY +V++ N DA NA + +
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 90 NFMPINGKPIRIMYSHRDPSIRKSGY-GNVFIKNLDTSIDNKALCDTFAAFGTVLS---- 144
+ G+ IR ++ R P KS Y N + D ++ + + G V S
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227
Query: 145 --CKVAIDSNGQ--------SKGYGFVQFENEEAAQNAIKMLNGMLI 181
+ GQ KGY FV+F + E+A +AI +NG I
Sbjct: 228 QLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTI 274
>MGI|MGI:1926034 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008380 "RNA
splicing" evidence=ISO] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1926034 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
CTD:11189 OMA:HSAYLNP GO:GO:0000381 OrthoDB:EOG4RJG30 EMBL:AY165052
EMBL:BC057553 IPI:IPI00461847 IPI:IPI00854025 RefSeq:NP_766022.1
UniGene:Mm.44292 ProteinModelPortal:Q8CIN6 SMR:Q8CIN6 STRING:Q8CIN6
PhosphoSite:Q8CIN6 PaxDb:Q8CIN6 PRIDE:Q8CIN6
Ensembl:ENSMUST00000029784 GeneID:78784 KEGG:mmu:78784
UCSC:uc008qgl.1 UCSC:uc008qgm.1 InParanoid:Q8CIN6 NextBio:349492
Bgee:Q8CIN6 CleanEx:MM_TNRC4 Genevestigator:Q8CIN6 Uniprot:Q8CIN6
Length = 465
Score = 149 (57.5 bits), Expect = 6.3e-18, Sum P(2) = 6.3e-18
Identities = 28/78 (35%), Positives = 51/78 (65%)
Query: 193 RRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGF 251
++Q++ QQ P N+++ +L + TD ++ ++F FG + SA V D + +S+CFGF
Sbjct: 366 QQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGF 425
Query: 252 VNFQSPDAAAAAVEKLNG 269
V+F +P +A AA++ +NG
Sbjct: 426 VSFDNPASAQAAIQAMNG 443
Score = 148 (57.2 bits), Expect = 6.3e-18, Sum P(2) = 6.3e-18
Identities = 42/153 (27%), Positives = 73/153 (47%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKE 87
+ L+VG + +++ E L +F Q ++ + V +D+ G A++ Y A A+
Sbjct: 7 IKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQS 66
Query: 88 ALN---FMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS 144
AL+ +P +PI++ + D R G +F+ L ++ + F FGT+
Sbjct: 67 ALHEQKTLPGMNRPIQVKPA--DSESR--GDRKLFVGMLGKQQTDEDVRKMFEPFGTIDE 122
Query: 145 CKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
C V +G SKG FV+F+ AQ AI L+
Sbjct: 123 CTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLH 155
Score = 145 (56.1 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
Identities = 42/154 (27%), Positives = 74/154 (48%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKML 176
+F+ + ++ K L F FG + V D G KG F+ + A +A+K
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYC---ARDSALKAQ 65
Query: 177 NGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSA 236
+ + ++++ G+ Q + + S ++V L + TDED++K+F FGTI
Sbjct: 66 SAL--HEQKTLPGMNRPIQVKPADSESRGDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 123
Query: 237 IVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGT 270
V++ DG S+ FV FQ+ A AA+ L+ +
Sbjct: 124 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSS 157
Score = 134 (52.2 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 31/97 (31%), Positives = 51/97 (52%)
Query: 297 EQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFA 355
+Q++ + E G N+++ +L D ++ ++F FG + S KV VD+ SK GF
Sbjct: 367 QQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFV 426
Query: 356 AFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERK 392
+F P A A+ MNG IG K L V + + K+ +
Sbjct: 427 SFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 463
Score = 134 (52.2 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKM 175
N+FI +L + + F FG V+S KV +D + QSK +GFV F+N +AQ AI+
Sbjct: 381 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 440
Query: 176 LNGMLINDKQVYVGL 190
+NG I K++ V L
Sbjct: 441 MNGFQIGMKRLKVQL 455
Score = 133 (51.9 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 64/262 (24%), Positives = 99/262 (37%)
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAA 263
P ++V + + ++DLK IF FG I V+KD + F + A +A
Sbjct: 4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDK--YTGLHKGCAFLTYCARDSA 61
Query: 264 VEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIND 323
+ K + K G + + AD ++ +++ L++ L D
Sbjct: 62 L-KAQSALHEQKT-LPGMNRPIQVKPADSESRGDRK------------LFVGMLGKQQTD 107
Query: 324 EKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMI---GRKPL 380
E ++++F FGTI C V+ G SKG F F EA A+N ++ L
Sbjct: 108 EDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSL 167
Query: 381 YVAVAQRKEERKARLQAQFA-QIRAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGL 439
V A ++ER R Q A Q+ G SP+A Y L QQ
Sbjct: 168 VVKFADTEKERGLRRMQQVATQL---GMFSPIALQFGAYSAYTQALMQQQAALVAAHSAY 224
Query: 440 MPPQAAGYGFQQQVFPGLRPGG 461
+ P A Q Q + G
Sbjct: 225 LSPMATMAAVQMQHMAAISANG 246
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 226 (84.6 bits), Expect = 6.8e-18, P = 6.8e-18
Identities = 64/232 (27%), Positives = 112/232 (48%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+LYVG+L ++V E+ + LFSQ+ + ++ D + Y +V + + AA A A
Sbjct: 4 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAAALAA 61
Query: 89 LNFMPINGKPIRIMYSHRDPSIRK--SGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCK 146
+N I GK +++ ++ S +K S + +VF+ +L I + + FA FG + +
Sbjct: 62 MNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDAR 121
Query: 147 VAID-SNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRR----QERAQQN 201
V D + G+SKGYGFV F N+ A+NAI+ + G + +Q+ R+ + + N
Sbjct: 122 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESN 181
Query: 202 V------------SPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD 241
SP VY + +T++ +++ F FG I V D
Sbjct: 182 TKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD 233
Score = 168 (64.2 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 76/293 (25%), Positives = 126/293 (43%)
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAA 263
PK +YV NL+ VT+ + ++F G + ++ D+ G + FV F AAAA
Sbjct: 2 PK--TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAA 58
Query: 264 VEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIND 323
+ +NG K V A + ++ D F ++++ +L I
Sbjct: 59 LAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHF--------------HVFVGDLSPEITT 104
Query: 324 EKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYV 382
E +K F+ FG I+ +V+ D G SKG GF +F +A A+ +M G+ +G + +
Sbjct: 105 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 164
Query: 383 AVAQRKEER-KARLQAQFAQIRAPGGMSPLASGIPGYHHGAPRLG-PQQLYYGQGTP-G- 438
A RK K+ ++ Q+ +S + G + G G +QL +P G
Sbjct: 165 NWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQ 224
Query: 439 LMPPQA---AGYGFQQQVFPGLRPGGPNYIMPYHLQRQ--VHPGQRTGVRRSG 486
+M + GY F +Q GPNY +P + + P Q G R +G
Sbjct: 225 IMEIRVFPDKGYSFIRQTQSSAPWMGPNYSVPPPQGQNGGMLPNQPAGYRVAG 277
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 204 (76.9 bits), Expect = 3.3e-13, P = 3.3e-13
Identities = 62/226 (27%), Positives = 110/226 (48%)
Query: 189 GLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRC 248
G F RR A + P +YV L VT++ L++IF G + + ++ D + K
Sbjct: 72 GTFTRRT--APE---PNKRALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYN 126
Query: 249 FGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLK 308
+GFV + P AA A++ LNG R ++++R + + + K
Sbjct: 127 YGFVEYDDPGAADRAMQTLNG---------------RRVHQSEIRVNWAYQAATSATKED 171
Query: 309 GAN---LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEAT 364
+N +++ +L + +NDE L + FS FG+++ +VM D G S+G GF AF +A
Sbjct: 172 TSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAE 231
Query: 365 RALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRAPGGMSP 410
+AL+ M+G+ +G + + A +K + Q + + GM+P
Sbjct: 232 KALSSMDGEWLGSRAIRCNWANQKGQPSIAQQQAMSAV----GMTP 273
Score = 202 (76.2 bits), Expect = 8.5e-18, Sum P(2) = 8.5e-18
Identities = 45/163 (27%), Positives = 86/163 (52%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+LYVG L+ V E L +F V +V++ D++ + Y +V Y +P A A +
Sbjct: 86 ALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKG-YNYGFVEYDDPGAADRAMQT 144
Query: 89 LNFMPINGKPIRIMYSHRDP-SIRK---SGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS 144
LN ++ IR+ ++++ S K S + ++F+ +L ++++ L F+ FG+V
Sbjct: 145 LNGRRVHQSEIRVNWAYQAATSATKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSE 204
Query: 145 CKVAID-SNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQV 186
+V D G+S+GYGFV F + A+ A+ ++G + + +
Sbjct: 205 ARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAI 247
Score = 198 (74.8 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 44/153 (28%), Positives = 79/153 (51%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
+++ LD + L F G V + K+ D N + YGFV++++ AA A++ LN
Sbjct: 87 LYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADRAMQTLN 146
Query: 178 GMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAI 237
G ++ ++ V + A + + +++V +L+ V DE L + F FG+++ A
Sbjct: 147 GRRVHQSEIRVNWAYQAATSATKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEAR 206
Query: 238 VMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
VM D G+SR +GFV F+ A A+ ++G
Sbjct: 207 VMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDG 239
Score = 97 (39.2 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 25/83 (30%), Positives = 40/83 (48%)
Query: 30 LYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL 89
++VGDL VN+ L FS V RV D S GY +V + + DA A ++
Sbjct: 178 IFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSM 237
Query: 90 NFMPINGKPIRIMYSHR--DPSI 110
+ + + IR ++++ PSI
Sbjct: 238 DGEWLGSRAIRCNWANQKGQPSI 260
Score = 90 (36.7 bits), Expect = 8.5e-18, Sum P(2) = 8.5e-18
Identities = 43/166 (25%), Positives = 62/166 (37%)
Query: 313 YLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG 372
Y+ NL + LF FG + + D+ GF+ F E A +A+ +NG
Sbjct: 305 YVGNLTPYTTANDVVPLFQNFGYVVESRFQADR-GFA----FIKMDSHENAAQAICGLNG 359
Query: 373 KMIGRKPLYVAVAQRKEERKARLQAQFAQIRAPGGMSPLASGIPG----Y--HHGAPRLG 426
+ +PL + K++ Q F +A S G PG Y +G G
Sbjct: 360 YNVNGRPLKCSWG--KDKNSTNPQGNFDPSQAFSPQSAGGPGFPGTPSTYFPQYGGQFSG 417
Query: 427 PQQLY----------YGQGTPGLMPPQAAGYGFQQQVFPGLRPGGP 462
PQ + + Q P PP A GYG QQ P + P
Sbjct: 418 PQGNFGPNSAQSPAGFQQPMPFSNPPSAGGYGRGQQA-PNAQWSSP 462
Score = 84 (34.6 bits), Expect = 3.6e-17, Sum P(2) = 3.6e-17
Identities = 24/76 (31%), Positives = 35/76 (46%)
Query: 201 NVSPKF-TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDA 259
N +P + T YV NL T D+ +F +FG + + D R F F+ S +
Sbjct: 295 NQTPAYQTTCYVGNLTPYTTANDVVPLFQNFGYVVESRFQAD-----RGFAFIKMDSHEN 349
Query: 260 AAAAVEKLNGTTNNDK 275
AA A+ LNG N +
Sbjct: 350 AAQAICGLNGYNVNGR 365
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 241 (89.9 bits), Expect = 8.9e-18, P = 8.9e-18
Identities = 74/273 (27%), Positives = 128/273 (46%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+LYVG+L ++V E+ + LFSQ+ + ++ D + Y +V + + AA A A
Sbjct: 4 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAAALAA 61
Query: 89 LNFMPINGKPIRIMYS------HRDPSI-------RKSGYGNVFIKNLDTSIDNKALCDT 135
+N I GK +++ ++ +D S R + +VF+ +L I + +
Sbjct: 62 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 121
Query: 136 FAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRR 194
FA FG + +V D + G+SKGYGFV F N+ A+NAI+ + G + +Q+ R+
Sbjct: 122 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 181
Query: 195 ----QERAQQNV------------SPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIV 238
+ + N SP VY + +T++ +++ F FG I V
Sbjct: 182 PPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRV 241
Query: 239 MKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTT 271
D + F+ F S ++AA A+ +NGTT
Sbjct: 242 FPDKG-----YSFIRFSSHESAAHAIVSVNGTT 269
Score = 236 (88.1 bits), Expect = 3.5e-17, P = 3.5e-17
Identities = 102/393 (25%), Positives = 170/393 (43%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
+++ NL + + F+ G +CK+ +D+ G Y FV+F A A+ +N
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 63
Query: 178 GMLINDKQVYVGLFV----RRQERAQQNV-----SPKFTNVYVNNLAETVTDEDLKKIFG 228
G I K+V V ++++ + V S +V+V +L+ +T ED+K F
Sbjct: 64 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 123
Query: 229 HFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKV----WYVGRAQ 283
FG I+ A V+KD + GKS+ +GFV+F + A A++++ G + W +
Sbjct: 124 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 183
Query: 284 K-RAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVM 342
++ E++ + E +S+ +Y + + ++ +++ FS FG I +V
Sbjct: 184 APKSTYESNTKQLSYDEVVSQSSP-GNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF 242
Query: 343 VDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQI 402
D KG F FS E A A+ +NG I + + + +Q Q QI
Sbjct: 243 PD-----KGYSFIRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQ-NQI 296
Query: 403 RAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTP-GLMPPQAAGYG--FQQQVFPGLRP 459
G P A G G +G QQ+ GQ P G P YG + QQ F +
Sbjct: 297 ----GYPP-AYGQWGQWYG----NAQQI--GQYVPNGWQVPAYGMYGQPWSQQGFNQTQS 345
Query: 460 G----GPNYIMPYHLQRQ--VHPGQRTGVRRSG 486
GPNY +P + + P Q G R +G
Sbjct: 346 SAPWMGPNYSVPPPQGQNGGMLPNQPAGYRVAG 378
Score = 166 (63.5 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 51/186 (27%), Positives = 87/186 (46%)
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAA 263
PK +YV NL+ VT+ + ++F G + ++ D+ G + FV F AAAA
Sbjct: 2 PK--TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAA 58
Query: 264 VEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIND 323
+ +NG K V A + ++ D + +S ++++ +L I
Sbjct: 59 LAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTV---VSTQRSQDHFHVFVGDLSPEITT 115
Query: 324 EKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYV 382
E +K F+ FG I+ +V+ D G SKG GF +F +A A+ +M G+ +G + +
Sbjct: 116 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 175
Query: 383 AVAQRK 388
A RK
Sbjct: 176 NWATRK 181
Score = 143 (55.4 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 44/167 (26%), Positives = 73/167 (43%)
Query: 30 LYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL 89
++VGDL + + F+ ++ RV +D + S GY +V++ N DA NA + +
Sbjct: 104 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 163
Query: 90 NFMPINGKPIRIMYSHRDPSIRKSGY-GNVFIKNLDTSIDNKALCDTFAAFGTVLS---- 144
+ G+ IR ++ R P KS Y N + D + + + G V S
Sbjct: 164 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTE 223
Query: 145 --CKVAIDSNGQ--------SKGYGFVQFENEEAAQNAIKMLNGMLI 181
+ GQ KGY F++F + E+A +AI +NG I
Sbjct: 224 QLMRQTFSPFGQIMEIRVFPDKGYSFIRFSSHESAAHAIVSVNGTTI 270
>UNIPROTKB|Q5SZQ7 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH471121
HOVERGEN:HBG107646 KO:K13207 HOGENOM:HOG000004754 CTD:11189
EMBL:AL589765 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO GeneID:11189
KEGG:hsa:11189 HGNC:HGNC:11967 PharmGKB:PA36654 GenomeRNAi:11189
NextBio:42591 IPI:IPI00386736 RefSeq:NP_001166120.1 SMR:Q5SZQ7
STRING:Q5SZQ7 Ensembl:ENST00000290585 UCSC:uc009wmy.3
EvolutionaryTrace:Q5SZQ7 Uniprot:Q5SZQ7
Length = 415
Score = 159 (61.0 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 66/263 (25%), Positives = 102/263 (38%)
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAA 262
P ++V + + ++DLK IF FG I V+KD G + F+ + + D+A
Sbjct: 4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALK 63
Query: 263 AVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
A L+ ++ G + + AD ++ E + L++ L
Sbjct: 64 AQSALH-----EQKTLPGMNRPIQVKPADSESRGEDRK-----------LFVGMLGKQQT 107
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMI---GRKP 379
DE ++++F FGTI C V+ G SKG F F EA A+N ++
Sbjct: 108 DEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSS 167
Query: 380 LYVAVAQRKEERKARLQAQFA-QIRAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPG 438
L V A ++ER R Q A Q+ G SP+A Y L QQ
Sbjct: 168 LVVKFADTEKERGLRRMQQVATQL---GMFSPIALQFGAYSAYTQALMQQQAALVAAHSA 224
Query: 439 LMPPQAAGYGFQQQVFPGLRPGG 461
+ P A Q Q + G
Sbjct: 225 YLSPMATMAAVQMQHMAAINANG 247
Score = 149 (57.5 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 28/78 (35%), Positives = 51/78 (65%)
Query: 193 RRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGF 251
++Q++ QQ P N+++ +L + TD ++ ++F FG + SA V D + +S+CFGF
Sbjct: 316 QQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGF 375
Query: 252 VNFQSPDAAAAAVEKLNG 269
V+F +P +A AA++ +NG
Sbjct: 376 VSFDNPASAQAAIQAMNG 393
Score = 144 (55.7 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 41/153 (26%), Positives = 72/153 (47%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKE 87
+ L+VG + +++ E L +F Q ++ + V +D+ G A++ Y A A+
Sbjct: 7 IKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQS 66
Query: 88 ALN---FMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS 144
AL+ +P +PI++ + D R +F+ L ++ + F FGT+
Sbjct: 67 ALHEQKTLPGMNRPIQVKPA--DSESRGEDR-KLFVGMLGKQQTDEDVRKMFEPFGTIDE 123
Query: 145 CKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
C V +G SKG FV+F+ AQ AI L+
Sbjct: 124 CTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLH 156
Score = 139 (54.0 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 42/155 (27%), Positives = 75/155 (48%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKML 176
+F+ + ++ K L F FG + V D G KG F+ + A +A+K
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYC---ARDSALKAQ 65
Query: 177 NGMLINDKQVYVGLFVRRQERAQQNVSP-KFTNVYVNNLAETVTDEDLKKIFGHFGTITS 235
+ + ++++ G+ Q + + S + ++V L + TDED++K+F FGTI
Sbjct: 66 SAL--HEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDE 123
Query: 236 AIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGT 270
V++ DG S+ FV FQ+ A AA+ L+ +
Sbjct: 124 CTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSS 158
Score = 134 (52.2 bits), Expect = 4.3e-16, Sum P(2) = 4.3e-16
Identities = 31/97 (31%), Positives = 51/97 (52%)
Query: 297 EQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFA 355
+Q++ + E G N+++ +L D ++ ++F FG + S KV VD+ SK GF
Sbjct: 317 QQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFV 376
Query: 356 AFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERK 392
+F P A A+ MNG IG K L V + + K+ +
Sbjct: 377 SFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 413
Score = 134 (52.2 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKM 175
N+FI +L + + F FG V+S KV +D + QSK +GFV F+N +AQ AI+
Sbjct: 331 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 390
Query: 176 LNGMLINDKQVYVGL 190
+NG I K++ V L
Sbjct: 391 MNGFQIGMKRLKVQL 405
>UNIPROTKB|F1NZY6 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00560000076837 EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 IPI:IPI00971429 Ensembl:ENSGALT00000010859
ArrayExpress:F1NZY6 Uniprot:F1NZY6
Length = 484
Score = 148 (57.2 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 33/92 (35%), Positives = 50/92 (54%)
Query: 302 SRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMP 360
S+ E +GANL++ +L D+ + ++F FG + S KV +D Q SK GF ++ P
Sbjct: 391 SQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNP 450
Query: 361 EEATRALNEMNGKMIGRKPLYVAVAQRKEERK 392
A A+ MNG IG K L V + + K + K
Sbjct: 451 VSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSK 482
Score = 146 (56.5 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 41/155 (26%), Positives = 74/155 (47%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKR--SSLGYAYVNYSNPQDAANA 85
+ ++VG + ++ +E +L +LF V + V RD+S+ S G +V + + A A
Sbjct: 16 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 86 KEAL-NFMPINGK--PIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTV 142
+ AL N + G PI++ + + S +FI + + + F+ FG +
Sbjct: 76 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDR-KLFIGMVSKKCNENDIRVMFSPFGQI 134
Query: 143 LSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
C++ +G S+G FV F AQNAIK ++
Sbjct: 135 EECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMH 169
Score = 143 (55.4 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 54/206 (26%), Positives = 95/206 (46%)
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFG--FVNFQSPDAA 260
P ++V + + ++++LK++F +G + V++D S + G FV F + AA
Sbjct: 13 PDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA 72
Query: 261 AAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDS 320
A L+ N K G + AD E+ + E K L++ +
Sbjct: 73 LEAQNALH----NIKT-LPGMHHPIQMKPAD------SEKSNAVEDRK---LFIGMVSKK 118
Query: 321 INDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFS---MPEEATRALNEMNGKMIG- 376
N+ ++ +FS FG I C+++ G S+G F FS M + A +A+++ M G
Sbjct: 119 CNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQ-TMEGC 177
Query: 377 RKPLYVAVAQ-RKEERKARLQAQFAQ 401
P+ V A +K++ + RLQ Q AQ
Sbjct: 178 SSPIVVKFADTQKDKEQRRLQQQLAQ 203
Score = 133 (51.9 bits), Expect = 5.7e-16, Sum P(2) = 5.7e-16
Identities = 28/86 (32%), Positives = 51/86 (59%)
Query: 186 VYVGLFVRRQERA-QQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDG 244
+Y +++Q A Q P+ N+++ +L + D+D+ ++F FG + SA V D
Sbjct: 377 LYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQT 436
Query: 245 K-SRCFGFVNFQSPDAAAAAVEKLNG 269
S+CFGFV++ +P +A AA++ +NG
Sbjct: 437 NLSKCFGFVSYDNPVSAQAAIQAMNG 462
Score = 122 (48.0 bits), Expect = 0.00034, P = 0.00034
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQ-SKGYGFVQFENEEAAQNAIKM 175
N+FI +L ++ + F FG V+S KV ID SK +GFV ++N +AQ AI+
Sbjct: 400 NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 459
Query: 176 LNGMLINDKQVYVGL 190
+NG I K++ V L
Sbjct: 460 MNGFQIGMKRLKVQL 474
>UNIPROTKB|E1C045 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006376
GeneTree:ENSGT00560000076837 IPI:IPI00587312 EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 ProteinModelPortal:E1C045
Ensembl:ENSGALT00000010858 ArrayExpress:E1C045 Uniprot:E1C045
Length = 488
Score = 148 (57.2 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 33/92 (35%), Positives = 50/92 (54%)
Query: 302 SRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMP 360
S+ E +GANL++ +L D+ + ++F FG + S KV +D Q SK GF ++ P
Sbjct: 395 SQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNP 454
Query: 361 EEATRALNEMNGKMIGRKPLYVAVAQRKEERK 392
A A+ MNG IG K L V + + K + K
Sbjct: 455 VSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSK 486
Score = 146 (56.5 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 41/155 (26%), Positives = 74/155 (47%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKR--SSLGYAYVNYSNPQDAANA 85
+ ++VG + ++ +E +L +LF V + V RD+S+ S G +V + + A A
Sbjct: 16 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 86 KEAL-NFMPINGK--PIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTV 142
+ AL N + G PI++ + + S +FI + + + F+ FG +
Sbjct: 76 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDR-KLFIGMVSKKCNENDIRVMFSPFGQI 134
Query: 143 LSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
C++ +G S+G FV F AQNAIK ++
Sbjct: 135 EECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMH 169
Score = 143 (55.4 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 54/206 (26%), Positives = 95/206 (46%)
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFG--FVNFQSPDAA 260
P ++V + + ++++LK++F +G + V++D S + G FV F + AA
Sbjct: 13 PDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA 72
Query: 261 AAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDS 320
A L+ N K G + AD E+ + E K L++ +
Sbjct: 73 LEAQNALH----NIKT-LPGMHHPIQMKPAD------SEKSNAVEDRK---LFIGMVSKK 118
Query: 321 INDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFS---MPEEATRALNEMNGKMIG- 376
N+ ++ +FS FG I C+++ G S+G F FS M + A +A+++ M G
Sbjct: 119 CNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQ-TMEGC 177
Query: 377 RKPLYVAVAQ-RKEERKARLQAQFAQ 401
P+ V A +K++ + RLQ Q AQ
Sbjct: 178 SSPIVVKFADTQKDKEQRRLQQQLAQ 203
Score = 133 (51.9 bits), Expect = 5.9e-16, Sum P(2) = 5.9e-16
Identities = 28/86 (32%), Positives = 51/86 (59%)
Query: 186 VYVGLFVRRQERA-QQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDG 244
+Y +++Q A Q P+ N+++ +L + D+D+ ++F FG + SA V D
Sbjct: 381 LYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQT 440
Query: 245 K-SRCFGFVNFQSPDAAAAAVEKLNG 269
S+CFGFV++ +P +A AA++ +NG
Sbjct: 441 NLSKCFGFVSYDNPVSAQAAIQAMNG 466
Score = 122 (48.0 bits), Expect = 0.00035, P = 0.00035
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQ-SKGYGFVQFENEEAAQNAIKM 175
N+FI +L ++ + F FG V+S KV ID SK +GFV ++N +AQ AI+
Sbjct: 404 NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 463
Query: 176 LNGMLINDKQVYVGL 190
+NG I K++ V L
Sbjct: 464 MNGFQIGMKRLKVQL 478
Score = 112 (44.5 bits), Expect = 5.3e-14, Sum P(2) = 5.3e-14
Identities = 47/195 (24%), Positives = 87/195 (44%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNG---QSKGYGFVQFENEEAA---QN 171
+F+ + S K L + F +G V V D + QSKG FV F +AA QN
Sbjct: 18 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 172 A---IKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFG 228
A IK L GM + + ++ + + N + + +++ +++ + D++ +F
Sbjct: 78 ALHNIKTLPGM-------HHPIQMKPADSEKSN-AVEDRKLFIGMVSKKCNENDIRVMFS 129
Query: 229 HFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAER 288
FG I +++ DG SR FV F + A A++ ++ + + G + +
Sbjct: 130 PFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTME-----GCSSPIVVK 184
Query: 289 EADLRAKFEQERISR 303
AD + EQ R+ +
Sbjct: 185 FADTQKDKEQRRLQQ 199
>UNIPROTKB|F1P674 [details] [associations]
symbol:CELF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13207 GeneTree:ENSGT00560000076837 CTD:10659
OMA:TMRNEEL EMBL:AAEX03001288 EMBL:AAEX03001289 EMBL:AAEX03001290
RefSeq:XP_003433765.1 ProteinModelPortal:F1P674
Ensembl:ENSCAFT00000008021 GeneID:607310 KEGG:cfa:607310
Uniprot:F1P674
Length = 488
Score = 148 (57.2 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 33/92 (35%), Positives = 50/92 (54%)
Query: 302 SRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMP 360
S+ E +GANL++ +L D+ + ++F FG + S KV +D Q SK GF ++ P
Sbjct: 395 SQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNP 454
Query: 361 EEATRALNEMNGKMIGRKPLYVAVAQRKEERK 392
A A+ MNG IG K L V + + K + K
Sbjct: 455 VSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSK 486
Score = 146 (56.5 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 41/155 (26%), Positives = 74/155 (47%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKR--SSLGYAYVNYSNPQDAANA 85
+ ++VG + ++ +E +L +LF V + V RD+S+ S G +V + + A A
Sbjct: 16 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 86 KEAL-NFMPINGK--PIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTV 142
+ AL N + G PI++ + + S +FI + + + F+ FG +
Sbjct: 76 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDR-KLFIGMVSKKCNENDIRVMFSPFGQI 134
Query: 143 LSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
C++ +G S+G FV F AQNAIK ++
Sbjct: 135 EECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMH 169
Score = 143 (55.4 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 54/206 (26%), Positives = 95/206 (46%)
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFG--FVNFQSPDAA 260
P ++V + + ++++LK++F +G + V++D S + G FV F + AA
Sbjct: 13 PDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA 72
Query: 261 AAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDS 320
A L+ N K G + AD E+ + E K L++ +
Sbjct: 73 LEAQNALH----NIKT-LPGMHHPIQMKPAD------SEKSNAVEDRK---LFIGMVSKK 118
Query: 321 INDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFS---MPEEATRALNEMNGKMIG- 376
N+ ++ +FS FG I C+++ G S+G F FS M + A +A+++ M G
Sbjct: 119 CNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQ-TMEGC 177
Query: 377 RKPLYVAVAQ-RKEERKARLQAQFAQ 401
P+ V A +K++ + RLQ Q AQ
Sbjct: 178 SSPIVVKFADTQKDKEQRRLQQQLAQ 203
Score = 133 (51.9 bits), Expect = 5.9e-16, Sum P(2) = 5.9e-16
Identities = 28/86 (32%), Positives = 51/86 (59%)
Query: 186 VYVGLFVRRQERA-QQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDG 244
+Y +++Q A Q P+ N+++ +L + D+D+ ++F FG + SA V D
Sbjct: 381 LYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQT 440
Query: 245 K-SRCFGFVNFQSPDAAAAAVEKLNG 269
S+CFGFV++ +P +A AA++ +NG
Sbjct: 441 NLSKCFGFVSYDNPVSAQAAIQAMNG 466
Score = 122 (48.0 bits), Expect = 0.00035, P = 0.00035
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQ-SKGYGFVQFENEEAAQNAIKM 175
N+FI +L ++ + F FG V+S KV ID SK +GFV ++N +AQ AI+
Sbjct: 404 NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 463
Query: 176 LNGMLINDKQVYVGL 190
+NG I K++ V L
Sbjct: 464 MNGFQIGMKRLKVQL 478
Score = 112 (44.5 bits), Expect = 5.3e-14, Sum P(2) = 5.3e-14
Identities = 47/195 (24%), Positives = 87/195 (44%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNG---QSKGYGFVQFENEEAA---QN 171
+F+ + S K L + F +G V V D + QSKG FV F +AA QN
Sbjct: 18 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 172 A---IKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFG 228
A IK L GM + + ++ + + N + + +++ +++ + D++ +F
Sbjct: 78 ALHNIKTLPGM-------HHPIQMKPADSEKSN-AVEDRKLFIGMVSKKCNENDIRVMFS 129
Query: 229 HFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAER 288
FG I +++ DG SR FV F + A A++ ++ + + G + +
Sbjct: 130 PFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTME-----GCSSPIVVK 184
Query: 289 EADLRAKFEQERISR 303
AD + EQ R+ +
Sbjct: 185 FADTQKDKEQRRLQQ 199
>UNIPROTKB|Q08E07 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9913
"Bos taurus" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 GO:GO:0030317 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 EMBL:BC123480 IPI:IPI00690976
RefSeq:NP_001070313.1 UniGene:Bt.18201 ProteinModelPortal:Q08E07
SMR:Q08E07 PRIDE:Q08E07 Ensembl:ENSBTAT00000033848 GeneID:513347
KEGG:bta:513347 CTD:11189 InParanoid:Q08E07 OMA:HSAYLNP
NextBio:20870823 ArrayExpress:Q08E07 GO:GO:0000381 Uniprot:Q08E07
Length = 461
Score = 159 (61.0 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 66/263 (25%), Positives = 102/263 (38%)
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAA 262
P ++V + + ++DLK IF FG I V+KD G + F+ + + D+A
Sbjct: 4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALK 63
Query: 263 AVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
A L+ ++ G + + AD ++ E + L++ L
Sbjct: 64 AQSALH-----EQKTLPGMNRPIQVKPADSESRGEDRK-----------LFVGMLGKQQT 107
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMI---GRKP 379
DE ++++F FGTI C V+ G SKG F F EA A+N ++
Sbjct: 108 DEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSS 167
Query: 380 LYVAVAQRKEERKARLQAQFA-QIRAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPG 438
L V A ++ER R Q A Q+ G SP+A Y L QQ
Sbjct: 168 LVVKFADTEKERGLRRMQQVATQL---GMFSPIALQFGAYSAYTQALMQQQAALVAAHSA 224
Query: 439 LMPPQAAGYGFQQQVFPGLRPGG 461
+ P A Q Q + G
Sbjct: 225 YLSPMATMAAVQMQHMAAINANG 247
Score = 149 (57.5 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 28/78 (35%), Positives = 51/78 (65%)
Query: 193 RRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGF 251
++Q++ QQ P N+++ +L + TD ++ ++F FG + SA V D + +S+CFGF
Sbjct: 362 QQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGF 421
Query: 252 VNFQSPDAAAAAVEKLNG 269
V+F +P +A AA++ +NG
Sbjct: 422 VSFDNPASAQAAIQAMNG 439
Score = 144 (55.7 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 41/153 (26%), Positives = 72/153 (47%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKE 87
+ L+VG + +++ E L +F Q ++ + V +D+ G A++ Y A A+
Sbjct: 7 IKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQS 66
Query: 88 ALN---FMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS 144
AL+ +P +PI++ + D R +F+ L ++ + F FGT+
Sbjct: 67 ALHEQKTLPGMNRPIQVKPA--DSESRGEDR-KLFVGMLGKQQTDEDVRKMFEPFGTIDE 123
Query: 145 CKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
C V +G SKG FV+F+ AQ AI L+
Sbjct: 124 CTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLH 156
Score = 139 (54.0 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 42/155 (27%), Positives = 75/155 (48%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKML 176
+F+ + ++ K L F FG + V D G KG F+ + A +A+K
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYC---ARDSALKAQ 65
Query: 177 NGMLINDKQVYVGLFVRRQERAQQNVSP-KFTNVYVNNLAETVTDEDLKKIFGHFGTITS 235
+ + ++++ G+ Q + + S + ++V L + TDED++K+F FGTI
Sbjct: 66 SAL--HEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDE 123
Query: 236 AIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGT 270
V++ DG S+ FV FQ+ A AA+ L+ +
Sbjct: 124 CTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSS 158
Score = 134 (52.2 bits), Expect = 6.3e-16, Sum P(2) = 6.3e-16
Identities = 31/97 (31%), Positives = 51/97 (52%)
Query: 297 EQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFA 355
+Q++ + E G N+++ +L D ++ ++F FG + S KV VD+ SK GF
Sbjct: 363 QQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFV 422
Query: 356 AFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERK 392
+F P A A+ MNG IG K L V + + K+ +
Sbjct: 423 SFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 459
Score = 134 (52.2 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKM 175
N+FI +L + + F FG V+S KV +D + QSK +GFV F+N +AQ AI+
Sbjct: 377 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 436
Query: 176 LNGMLINDKQVYVGL 190
+NG I K++ V L
Sbjct: 437 MNGFQIGMKRLKVQL 451
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 233 (87.1 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 66/220 (30%), Positives = 108/220 (49%)
Query: 71 YAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRK--SGYGNVFIKNLDTSID 128
Y +V + +DAA A A+N I GK +++ ++ S +K S + +VF+ +L I
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 126
Query: 129 NKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVY 187
+ + FA FG + +V D + G+SKGYGFV F N+ A+NAI + G + +Q+
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 188 VGLFVRRQ---ERAQQN-------------VSPKFTNVYVNNLAETVTDEDLKKIFGHFG 231
R+ + Q+N SPK VY +A +TD+ +++ F FG
Sbjct: 187 TNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFG 246
Query: 232 TITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTT 271
I V + + FV F + ++AA A+ +NGTT
Sbjct: 247 QIMEIRVFPEKG-----YSFVRFSTHESAAHAIVSVNGTT 281
Score = 210 (79.0 bits), Expect = 9.7e-15, Sum P(2) = 9.7e-15
Identities = 64/225 (28%), Positives = 104/225 (46%)
Query: 158 YGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAET 217
Y FV+F A A+ +NG I K+V V + +++ S F +V+V +L+
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVN-WATTPSSQKKDTSNHF-HVFVGDLSPE 124
Query: 218 VTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKV 276
+T ED+K F FG I+ A V+KD + GKS+ +GFV+F + A A+ + G +
Sbjct: 125 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184
Query: 277 ----WYVGR--AQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELF 330
W + A K + + +FE + K +Y + + D+ +++ F
Sbjct: 185 IRTNWATRKPPAPKSTQENNTKQLRFED--VVNQSSPKNCTVYCGGIASGLTDQLMRQTF 242
Query: 331 SEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMI 375
S FG I +V + KG F FS E A A+ +NG I
Sbjct: 243 SPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 135 (52.6 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 45/167 (26%), Positives = 71/167 (42%)
Query: 30 LYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL 89
++VGDL + + F+ ++ RV +D + S GY +V++ N DA NA +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 90 NFMPINGKPIRIMYSHRDPSIRKSGYGNV-----F--IKNLDTSIDNKALCDTFAAFGTV 142
+ G+ IR ++ R P KS N F + N + + C A+ T
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
Query: 143 LSCKVAIDSNGQ--------SKGYGFVQFENEEAAQNAIKMLNGMLI 181
+ GQ KGY FV+F E+A +AI +NG I
Sbjct: 236 QLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 47 (21.6 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 409 SPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPP-QAAGYG 448
SP A+ + G+ GA P Q GQ P ++PP AGYG
Sbjct: 353 SPSAAWMGGF--GAQ---PPQ---GQAPPPVIPPPNQAGYG 385
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 233 (87.1 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 66/220 (30%), Positives = 108/220 (49%)
Query: 71 YAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRK--SGYGNVFIKNLDTSID 128
Y +V + +DAA A A+N I GK +++ ++ S +K S + +VF+ +L I
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 126
Query: 129 NKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVY 187
+ + FA FG + +V D + G+SKGYGFV F N+ A+NAI + G + +Q+
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 188 VGLFVRRQ---ERAQQN-------------VSPKFTNVYVNNLAETVTDEDLKKIFGHFG 231
R+ + Q+N SPK VY +A +TD+ +++ F FG
Sbjct: 187 TNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFG 246
Query: 232 TITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTT 271
I V + + FV F + ++AA A+ +NGTT
Sbjct: 247 QIMEIRVFPEKG-----YSFVRFSTHESAAHAIVSVNGTT 281
Score = 210 (79.0 bits), Expect = 9.7e-15, Sum P(2) = 9.7e-15
Identities = 64/225 (28%), Positives = 104/225 (46%)
Query: 158 YGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAET 217
Y FV+F A A+ +NG I K+V V + +++ S F +V+V +L+
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVN-WATTPSSQKKDTSNHF-HVFVGDLSPE 124
Query: 218 VTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKV 276
+T ED+K F FG I+ A V+KD + GKS+ +GFV+F + A A+ + G +
Sbjct: 125 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184
Query: 277 ----WYVGR--AQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELF 330
W + A K + + +FE + K +Y + + D+ +++ F
Sbjct: 185 IRTNWATRKPPAPKSTQENNTKQLRFED--VVNQSSPKNCTVYCGGIASGLTDQLMRQTF 242
Query: 331 SEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMI 375
S FG I +V + KG F FS E A A+ +NG I
Sbjct: 243 SPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 135 (52.6 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 45/167 (26%), Positives = 71/167 (42%)
Query: 30 LYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL 89
++VGDL + + F+ ++ RV +D + S GY +V++ N DA NA +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 90 NFMPINGKPIRIMYSHRDPSIRKSGYGNV-----F--IKNLDTSIDNKALCDTFAAFGTV 142
+ G+ IR ++ R P KS N F + N + + C A+ T
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
Query: 143 LSCKVAIDSNGQ--------SKGYGFVQFENEEAAQNAIKMLNGMLI 181
+ GQ KGY FV+F E+A +AI +NG I
Sbjct: 236 QLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 47 (21.6 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 409 SPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPP-QAAGYG 448
SP A+ + G+ GA P Q GQ P ++PP AGYG
Sbjct: 353 SPSAAWMGGF--GAQ---PPQ---GQAPPPVIPPPNQAGYG 385
>UNIPROTKB|F1P017 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:TMRNEEL EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 IPI:IPI00820413 Ensembl:ENSGALT00000040039
ArrayExpress:F1P017 Uniprot:F1P017
Length = 494
Score = 148 (57.2 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 33/92 (35%), Positives = 50/92 (54%)
Query: 302 SRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMP 360
S+ E +GANL++ +L D+ + ++F FG + S KV +D Q SK GF ++ P
Sbjct: 401 SQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNP 460
Query: 361 EEATRALNEMNGKMIGRKPLYVAVAQRKEERK 392
A A+ MNG IG K L V + + K + K
Sbjct: 461 VSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSK 492
Score = 146 (56.5 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 41/155 (26%), Positives = 74/155 (47%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKR--SSLGYAYVNYSNPQDAANA 85
+ ++VG + ++ +E +L +LF V + V RD+S+ S G +V + + A A
Sbjct: 22 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 81
Query: 86 KEAL-NFMPINGK--PIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTV 142
+ AL N + G PI++ + + S +FI + + + F+ FG +
Sbjct: 82 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDR-KLFIGMVSKKCNENDIRVMFSPFGQI 140
Query: 143 LSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
C++ +G S+G FV F AQNAIK ++
Sbjct: 141 EECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMH 175
Score = 143 (55.4 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 54/206 (26%), Positives = 95/206 (46%)
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFG--FVNFQSPDAA 260
P ++V + + ++++LK++F +G + V++D S + G FV F + AA
Sbjct: 19 PDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA 78
Query: 261 AAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDS 320
A L+ N K G + AD E+ + E K L++ +
Sbjct: 79 LEAQNALH----NIKT-LPGMHHPIQMKPAD------SEKSNAVEDRK---LFIGMVSKK 124
Query: 321 INDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFS---MPEEATRALNEMNGKMIG- 376
N+ ++ +FS FG I C+++ G S+G F FS M + A +A+++ M G
Sbjct: 125 CNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQ-TMEGC 183
Query: 377 RKPLYVAVAQ-RKEERKARLQAQFAQ 401
P+ V A +K++ + RLQ Q AQ
Sbjct: 184 SSPIVVKFADTQKDKEQRRLQQQLAQ 209
Score = 133 (51.9 bits), Expect = 6.1e-16, Sum P(2) = 6.1e-16
Identities = 28/86 (32%), Positives = 51/86 (59%)
Query: 186 VYVGLFVRRQERA-QQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDG 244
+Y +++Q A Q P+ N+++ +L + D+D+ ++F FG + SA V D
Sbjct: 387 LYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQT 446
Query: 245 K-SRCFGFVNFQSPDAAAAAVEKLNG 269
S+CFGFV++ +P +A AA++ +NG
Sbjct: 447 NLSKCFGFVSYDNPVSAQAAIQAMNG 472
Score = 122 (48.0 bits), Expect = 0.00036, P = 0.00036
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQ-SKGYGFVQFENEEAAQNAIKM 175
N+FI +L ++ + F FG V+S KV ID SK +GFV ++N +AQ AI+
Sbjct: 410 NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 469
Query: 176 LNGMLINDKQVYVGL 190
+NG I K++ V L
Sbjct: 470 MNGFQIGMKRLKVQL 484
Score = 112 (44.5 bits), Expect = 5.5e-14, Sum P(2) = 5.5e-14
Identities = 47/195 (24%), Positives = 87/195 (44%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNG---QSKGYGFVQFENEEAA---QN 171
+F+ + S K L + F +G V V D + QSKG FV F +AA QN
Sbjct: 24 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 83
Query: 172 A---IKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFG 228
A IK L GM + + ++ + + N + + +++ +++ + D++ +F
Sbjct: 84 ALHNIKTLPGM-------HHPIQMKPADSEKSN-AVEDRKLFIGMVSKKCNENDIRVMFS 135
Query: 229 HFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAER 288
FG I +++ DG SR FV F + A A++ ++ + + G + +
Sbjct: 136 PFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTME-----GCSSPIVVK 190
Query: 289 EADLRAKFEQERISR 303
AD + EQ R+ +
Sbjct: 191 FADTQKDKEQRRLQQ 205
>UNIPROTKB|Q5SZQ8 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0030317 "sperm
motility" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0008380 "RNA splicing" evidence=IMP] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0030317 GO:GO:0000398 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 CTD:11189 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF329264 EMBL:AY165003 EMBL:AL589765
EMBL:BC052491 EMBL:BC068008 EMBL:BC104758 EMBL:BC143226 EMBL:U80746
EMBL:AF284423 IPI:IPI00852836 IPI:IPI00852895 IPI:IPI00852999
RefSeq:NP_009116.3 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO
ProteinModelPortal:Q5SZQ8 SMR:Q5SZQ8 IntAct:Q5SZQ8
MINT:MINT-4866187 STRING:Q5SZQ8 PhosphoSite:Q5SZQ8 DMDM:74756184
PRIDE:Q5SZQ8 Ensembl:ENST00000290583 GeneID:11189 KEGG:hsa:11189
UCSC:uc001eyr.3 UCSC:uc001eys.2 UCSC:uc009wmx.2
GeneCards:GC01M151674 HGNC:HGNC:11967 HPA:HPA006292 MIM:612678
neXtProt:NX_Q5SZQ8 PharmGKB:PA36654 PhylomeDB:Q5SZQ8
EvolutionaryTrace:Q5SZQ8 GenomeRNAi:11189 NextBio:42591
ArrayExpress:Q5SZQ8 Bgee:Q5SZQ8 CleanEx:HS_TNRC4
Genevestigator:Q5SZQ8 Uniprot:Q5SZQ8
Length = 465
Score = 159 (61.0 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 66/263 (25%), Positives = 102/263 (38%)
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAA 262
P ++V + + ++DLK IF FG I V+KD G + F+ + + D+A
Sbjct: 4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALK 63
Query: 263 AVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
A L+ ++ G + + AD ++ E + L++ L
Sbjct: 64 AQSALH-----EQKTLPGMNRPIQVKPADSESRGEDRK-----------LFVGMLGKQQT 107
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMI---GRKP 379
DE ++++F FGTI C V+ G SKG F F EA A+N ++
Sbjct: 108 DEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSS 167
Query: 380 LYVAVAQRKEERKARLQAQFA-QIRAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPG 438
L V A ++ER R Q A Q+ G SP+A Y L QQ
Sbjct: 168 LVVKFADTEKERGLRRMQQVATQL---GMFSPIALQFGAYSAYTQALMQQQAALVAAHSA 224
Query: 439 LMPPQAAGYGFQQQVFPGLRPGG 461
+ P A Q Q + G
Sbjct: 225 YLSPMATMAAVQMQHMAAINANG 247
Score = 149 (57.5 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 28/78 (35%), Positives = 51/78 (65%)
Query: 193 RRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGF 251
++Q++ QQ P N+++ +L + TD ++ ++F FG + SA V D + +S+CFGF
Sbjct: 366 QQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGF 425
Query: 252 VNFQSPDAAAAAVEKLNG 269
V+F +P +A AA++ +NG
Sbjct: 426 VSFDNPASAQAAIQAMNG 443
Score = 144 (55.7 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 41/153 (26%), Positives = 72/153 (47%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKE 87
+ L+VG + +++ E L +F Q ++ + V +D+ G A++ Y A A+
Sbjct: 7 IKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQS 66
Query: 88 ALN---FMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS 144
AL+ +P +PI++ + D R +F+ L ++ + F FGT+
Sbjct: 67 ALHEQKTLPGMNRPIQVKPA--DSESRGEDR-KLFVGMLGKQQTDEDVRKMFEPFGTIDE 123
Query: 145 CKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
C V +G SKG FV+F+ AQ AI L+
Sbjct: 124 CTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLH 156
Score = 139 (54.0 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 42/155 (27%), Positives = 75/155 (48%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKML 176
+F+ + ++ K L F FG + V D G KG F+ + A +A+K
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYC---ARDSALKAQ 65
Query: 177 NGMLINDKQVYVGLFVRRQERAQQNVSP-KFTNVYVNNLAETVTDEDLKKIFGHFGTITS 235
+ + ++++ G+ Q + + S + ++V L + TDED++K+F FGTI
Sbjct: 66 SAL--HEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDE 123
Query: 236 AIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGT 270
V++ DG S+ FV FQ+ A AA+ L+ +
Sbjct: 124 CTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSS 158
Score = 134 (52.2 bits), Expect = 6.5e-16, Sum P(2) = 6.5e-16
Identities = 31/97 (31%), Positives = 51/97 (52%)
Query: 297 EQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFA 355
+Q++ + E G N+++ +L D ++ ++F FG + S KV VD+ SK GF
Sbjct: 367 QQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFV 426
Query: 356 AFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERK 392
+F P A A+ MNG IG K L V + + K+ +
Sbjct: 427 SFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 463
Score = 134 (52.2 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKM 175
N+FI +L + + F FG V+S KV +D + QSK +GFV F+N +AQ AI+
Sbjct: 381 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 440
Query: 176 LNGMLINDKQVYVGL 190
+NG I K++ V L
Sbjct: 441 MNGFQIGMKRLKVQL 455
>UNIPROTKB|Q5VZZ6 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC026887 HOVERGEN:HBG107646 HOGENOM:HOG000004754
EMBL:AL157704 EMBL:AL136320 IPI:IPI00845480 UniGene:Hs.309288
HGNC:HGNC:2550 EMBL:AL136369 EMBL:AL138769 EMBL:AL162408 SMR:Q5VZZ6
Ensembl:ENST00000354897 Uniprot:Q5VZZ6
Length = 498
Score = 148 (57.2 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 33/92 (35%), Positives = 50/92 (54%)
Query: 302 SRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMP 360
S+ E +GANL++ +L D+ + ++F FG + S KV +D Q SK GF ++ P
Sbjct: 405 SQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNP 464
Query: 361 EEATRALNEMNGKMIGRKPLYVAVAQRKEERK 392
A A+ MNG IG K L V + + K + K
Sbjct: 465 VSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSK 496
Score = 146 (56.5 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 41/155 (26%), Positives = 74/155 (47%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKR--SSLGYAYVNYSNPQDAANA 85
+ ++VG + ++ +E +L +LF V + V RD+S+ S G +V + + A A
Sbjct: 16 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 86 KEAL-NFMPINGK--PIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTV 142
+ AL N + G PI++ + + S +FI + + + F+ FG +
Sbjct: 76 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDR-KLFIGMVSKKCNENDIRVMFSPFGQI 134
Query: 143 LSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
C++ +G S+G FV F AQNAIK ++
Sbjct: 135 EECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMH 169
Score = 143 (55.4 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 54/206 (26%), Positives = 95/206 (46%)
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFG--FVNFQSPDAA 260
P ++V + + ++++LK++F +G + V++D S + G FV F + AA
Sbjct: 13 PDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA 72
Query: 261 AAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDS 320
A L+ N K G + AD E+ + E K L++ +
Sbjct: 73 LEAQNALH----NIKT-LPGMHHPIQMKPAD------SEKSNAVEDRK---LFIGMVSKK 118
Query: 321 INDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFS---MPEEATRALNEMNGKMIG- 376
N+ ++ +FS FG I C+++ G S+G F FS M + A +A+++ M G
Sbjct: 119 CNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQ-TMEGC 177
Query: 377 RKPLYVAVAQ-RKEERKARLQAQFAQ 401
P+ V A +K++ + RLQ Q AQ
Sbjct: 178 SSPIVVKFADTQKDKEQRRLQQQLAQ 203
Score = 133 (51.9 bits), Expect = 6.3e-16, Sum P(2) = 6.3e-16
Identities = 28/86 (32%), Positives = 51/86 (59%)
Query: 186 VYVGLFVRRQERA-QQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDG 244
+Y +++Q A Q P+ N+++ +L + D+D+ ++F FG + SA V D
Sbjct: 391 LYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQT 450
Query: 245 K-SRCFGFVNFQSPDAAAAAVEKLNG 269
S+CFGFV++ +P +A AA++ +NG
Sbjct: 451 NLSKCFGFVSYDNPVSAQAAIQAMNG 476
Score = 122 (48.0 bits), Expect = 0.00036, P = 0.00036
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQ-SKGYGFVQFENEEAAQNAIKM 175
N+FI +L ++ + F FG V+S KV ID SK +GFV ++N +AQ AI+
Sbjct: 414 NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 473
Query: 176 LNGMLINDKQVYVGL 190
+NG I K++ V L
Sbjct: 474 MNGFQIGMKRLKVQL 488
Score = 112 (44.5 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
Identities = 47/195 (24%), Positives = 87/195 (44%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNG---QSKGYGFVQFENEEAA---QN 171
+F+ + S K L + F +G V V D + QSKG FV F +AA QN
Sbjct: 18 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 172 A---IKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFG 228
A IK L GM + + ++ + + N + + +++ +++ + D++ +F
Sbjct: 78 ALHNIKTLPGM-------HHPIQMKPADSEKSN-AVEDRKLFIGMVSKKCNENDIRVMFS 129
Query: 229 HFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAER 288
FG I +++ DG SR FV F + A A++ ++ + + G + +
Sbjct: 130 PFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTME-----GCSSPIVVK 184
Query: 289 EADLRAKFEQERISR 303
AD + EQ R+ +
Sbjct: 185 FADTQKDKEQRRLQQ 199
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 232 (86.7 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 68/220 (30%), Positives = 109/220 (49%)
Query: 71 YAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRK--SGYGNVFIKNLDTSID 128
Y +V + +DAA A A+N I GK +++ ++ S +K S + +VF+ +L I
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 126
Query: 129 NKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVY 187
+ + FA FG + +V D + G+SKGYGFV F N+ A+NAI + G + +Q+
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 188 VGLFVRR-------QE------RAQQNV---SPKFTNVYVNNLAETVTDEDLKKIFGHFG 231
R+ QE R + V SPK VY +A +TD+ +++ F FG
Sbjct: 187 TNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFG 246
Query: 232 TITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTT 271
I V + + FV F + ++AA A+ +NGTT
Sbjct: 247 QIMEIRVFPEKG-----YSFVRFSTHESAAHAIVSVNGTT 281
Score = 209 (78.6 bits), Expect = 9.9e-15, Sum P(2) = 9.9e-15
Identities = 64/225 (28%), Positives = 104/225 (46%)
Query: 158 YGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAET 217
Y FV+F A A+ +NG I K+V V + +++ S F +V+V +L+
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVN-WATTPSSQKKDTSNHF-HVFVGDLSPE 124
Query: 218 VTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKV 276
+T ED+K F FG I+ A V+KD + GKS+ +GFV+F + A A+ + G +
Sbjct: 125 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184
Query: 277 ----WYVGR--AQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELF 330
W + A K + + +FE + K +Y + + D+ +++ F
Sbjct: 185 IRTNWATRKPPAPKSTQETNTKQLRFED--VVNQSSPKNCTVYCGGIASGLTDQLMRQTF 242
Query: 331 SEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMI 375
S FG I +V + KG F FS E A A+ +NG I
Sbjct: 243 SPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 131 (51.2 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 45/167 (26%), Positives = 71/167 (42%)
Query: 30 LYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL 89
++VGDL + + F+ ++ RV +D + S GY +V++ N DA NA +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 90 NFMPINGKPIRIMYSHRDPSIRKSGYG-NV----F--IKNLDTSIDNKALCDTFAAFGTV 142
+ G+ IR ++ R P KS N F + N + + C A+ T
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
Query: 143 LSCKVAIDSNGQ--------SKGYGFVQFENEEAAQNAIKMLNGMLI 181
+ GQ KGY FV+F E+A +AI +NG I
Sbjct: 236 QLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 113 (44.8 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 52/213 (24%), Positives = 87/213 (40%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRC----------------FGFV 252
+YV NL+ VT+ + ++F G S ++ + R + FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 253 NFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANL 312
F AAAA+ +NG K V A + ++ D F ++
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHF--------------HV 116
Query: 313 YLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEMN 371
++ +L I E +K F+ FG I+ +V+ D G SKG GF +F +A A+ M
Sbjct: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
Query: 372 GKMIGRKPLYVAVAQRKEER-KARLQAQFAQIR 403
G+ +G + + A RK K+ + Q+R
Sbjct: 177 GQWLGGRQIRTNWATRKPPAPKSTQETNTKQLR 209
Score = 48 (22.0 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 19/48 (39%), Positives = 24/48 (50%)
Query: 409 SPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPP-QAAGYGFQQQVFP 455
SP A+ + G+ GA P Q GQ P ++PP AGYG FP
Sbjct: 353 SPSAAWMGGF--GAQ---PPQ---GQAPPPVIPPPNQAGYGMAS--FP 390
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 232 (86.7 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 68/220 (30%), Positives = 109/220 (49%)
Query: 71 YAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRK--SGYGNVFIKNLDTSID 128
Y +V + +DAA A A+N I GK +++ ++ S +K S + +VF+ +L I
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 126
Query: 129 NKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVY 187
+ + FA FG + +V D + G+SKGYGFV F N+ A+NAI + G + +Q+
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 188 VGLFVRR-------QE------RAQQNV---SPKFTNVYVNNLAETVTDEDLKKIFGHFG 231
R+ QE R + V SPK VY +A +TD+ +++ F FG
Sbjct: 187 TNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFG 246
Query: 232 TITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTT 271
I V + + FV F + ++AA A+ +NGTT
Sbjct: 247 QIMEIRVFPEKG-----YSFVRFSTHESAAHAIVSVNGTT 281
Score = 209 (78.6 bits), Expect = 9.9e-15, Sum P(2) = 9.9e-15
Identities = 64/225 (28%), Positives = 104/225 (46%)
Query: 158 YGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAET 217
Y FV+F A A+ +NG I K+V V + +++ S F +V+V +L+
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVN-WATTPSSQKKDTSNHF-HVFVGDLSPE 124
Query: 218 VTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKV 276
+T ED+K F FG I+ A V+KD + GKS+ +GFV+F + A A+ + G +
Sbjct: 125 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184
Query: 277 ----WYVGR--AQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELF 330
W + A K + + +FE + K +Y + + D+ +++ F
Sbjct: 185 IRTNWATRKPPAPKSTQETNTKQLRFED--VVNQSSPKNCTVYCGGIASGLTDQLMRQTF 242
Query: 331 SEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMI 375
S FG I +V + KG F FS E A A+ +NG I
Sbjct: 243 SPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 131 (51.2 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 45/167 (26%), Positives = 71/167 (42%)
Query: 30 LYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL 89
++VGDL + + F+ ++ RV +D + S GY +V++ N DA NA +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 90 NFMPINGKPIRIMYSHRDPSIRKSGYG-NV----F--IKNLDTSIDNKALCDTFAAFGTV 142
+ G+ IR ++ R P KS N F + N + + C A+ T
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
Query: 143 LSCKVAIDSNGQ--------SKGYGFVQFENEEAAQNAIKMLNGMLI 181
+ GQ KGY FV+F E+A +AI +NG I
Sbjct: 236 QLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 113 (44.8 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 52/213 (24%), Positives = 87/213 (40%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRC----------------FGFV 252
+YV NL+ VT+ + ++F G S ++ + R + FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 253 NFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANL 312
F AAAA+ +NG K V A + ++ D F ++
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHF--------------HV 116
Query: 313 YLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEMN 371
++ +L I E +K F+ FG I+ +V+ D G SKG GF +F +A A+ M
Sbjct: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
Query: 372 GKMIGRKPLYVAVAQRKEER-KARLQAQFAQIR 403
G+ +G + + A RK K+ + Q+R
Sbjct: 177 GQWLGGRQIRTNWATRKPPAPKSTQETNTKQLR 209
Score = 48 (22.0 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 19/48 (39%), Positives = 24/48 (50%)
Query: 409 SPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPP-QAAGYGFQQQVFP 455
SP A+ + G+ GA P Q GQ P ++PP AGYG FP
Sbjct: 353 SPSAAWMGGF--GAQ---PPQ---GQAPPPVIPPPNQAGYGMAS--FP 390
>UNIPROTKB|O95319 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=TAS] [GO:0008016 "regulation of heart contraction"
evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0008016 GO:GO:0003723
GO:GO:0006396 EMBL:CH471072 EMBL:AC026887 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 CTD:10659
EMBL:AF090694 EMBL:AF090693 EMBL:AF036956 EMBL:U69546 EMBL:AF295068
EMBL:AF295063 EMBL:AF295064 EMBL:AF295065 EMBL:AF295066
EMBL:AF295067 EMBL:AF314199 EMBL:AF432906 EMBL:AK316354
EMBL:AL157704 EMBL:AL136320 EMBL:BC036391 IPI:IPI00410277
IPI:IPI00607544 IPI:IPI00845479 IPI:IPI00845480 IPI:IPI00853320
RefSeq:NP_001020247.1 RefSeq:NP_001020248.1 RefSeq:NP_001077060.1
RefSeq:NP_006552.3 UniGene:Hs.309288 ProteinModelPortal:O95319
SMR:O95319 IntAct:O95319 MINT:MINT-2868664 STRING:O95319
PhosphoSite:O95319 UCD-2DPAGE:O95319 PaxDb:O95319 PRIDE:O95319
Ensembl:ENST00000315874 Ensembl:ENST00000354440
Ensembl:ENST00000379261 Ensembl:ENST00000399850
Ensembl:ENST00000416382 Ensembl:ENST00000417956
Ensembl:ENST00000427450 GeneID:10659 KEGG:hsa:10659 UCSC:uc001iki.4
UCSC:uc001ikk.2 UCSC:uc001iko.4 UCSC:uc001ikp.4 UCSC:uc010qbj.1
GeneCards:GC10P011049 HGNC:HGNC:2550 MIM:602538 neXtProt:NX_O95319
PharmGKB:PA27046 ChiTaRS:CELF2 GenomeRNAi:10659 NextBio:40529
ArrayExpress:O95319 Bgee:O95319 CleanEx:HS_CUGBP2
Genevestigator:O95319 Uniprot:O95319
Length = 508
Score = 148 (57.2 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 33/92 (35%), Positives = 50/92 (54%)
Query: 302 SRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMP 360
S+ E +GANL++ +L D+ + ++F FG + S KV +D Q SK GF ++ P
Sbjct: 415 SQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNP 474
Query: 361 EEATRALNEMNGKMIGRKPLYVAVAQRKEERK 392
A A+ MNG IG K L V + + K + K
Sbjct: 475 VSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSK 506
Score = 146 (56.5 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 41/155 (26%), Positives = 74/155 (47%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKR--SSLGYAYVNYSNPQDAANA 85
+ ++VG + ++ +E +L +LF V + V RD+S+ S G +V + + A A
Sbjct: 40 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 99
Query: 86 KEAL-NFMPINGK--PIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTV 142
+ AL N + G PI++ + + S +FI + + + F+ FG +
Sbjct: 100 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDR-KLFIGMVSKKCNENDIRVMFSPFGQI 158
Query: 143 LSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
C++ +G S+G FV F AQNAIK ++
Sbjct: 159 EECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMH 193
Score = 143 (55.4 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 54/206 (26%), Positives = 95/206 (46%)
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFG--FVNFQSPDAA 260
P ++V + + ++++LK++F +G + V++D S + G FV F + AA
Sbjct: 37 PDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA 96
Query: 261 AAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDS 320
A L+ N K G + AD E+ + E K L++ +
Sbjct: 97 LEAQNALH----NIKT-LPGMHHPIQMKPAD------SEKSNAVEDRK---LFIGMVSKK 142
Query: 321 INDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFS---MPEEATRALNEMNGKMIG- 376
N+ ++ +FS FG I C+++ G S+G F FS M + A +A+++ M G
Sbjct: 143 CNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQ-TMEGC 201
Query: 377 RKPLYVAVAQ-RKEERKARLQAQFAQ 401
P+ V A +K++ + RLQ Q AQ
Sbjct: 202 SSPIVVKFADTQKDKEQRRLQQQLAQ 227
Score = 133 (51.9 bits), Expect = 6.7e-16, Sum P(2) = 6.7e-16
Identities = 28/86 (32%), Positives = 51/86 (59%)
Query: 186 VYVGLFVRRQERA-QQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDG 244
+Y +++Q A Q P+ N+++ +L + D+D+ ++F FG + SA V D
Sbjct: 401 LYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQT 460
Query: 245 K-SRCFGFVNFQSPDAAAAAVEKLNG 269
S+CFGFV++ +P +A AA++ +NG
Sbjct: 461 NLSKCFGFVSYDNPVSAQAAIQAMNG 486
Score = 122 (48.0 bits), Expect = 0.00037, P = 0.00037
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQ-SKGYGFVQFENEEAAQNAIKM 175
N+FI +L ++ + F FG V+S KV ID SK +GFV ++N +AQ AI+
Sbjct: 424 NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 483
Query: 176 LNGMLINDKQVYVGL 190
+NG I K++ V L
Sbjct: 484 MNGFQIGMKRLKVQL 498
>MGI|MGI:1338822 [details] [associations]
symbol:Celf2 "CUGBP, Elav-like family member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006376
"mRNA splice site selection" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1338822 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 GO:GO:0006376
GeneTree:ENSGT00560000076837 CTD:10659 ChiTaRS:CELF2 EMBL:AF090696
EMBL:AF090697 EMBL:Y18298 EMBL:AK137292 EMBL:AK151818 EMBL:AK152628
EMBL:AK153267 EMBL:AK160861 EMBL:AK161349 EMBL:AK164914
EMBL:AL929240 EMBL:AL845492 EMBL:AL845515 EMBL:BC026856
IPI:IPI00129146 IPI:IPI00651950 IPI:IPI00750780 IPI:IPI00751703
IPI:IPI00756899 IPI:IPI00853748 IPI:IPI00853844 IPI:IPI00853921
IPI:IPI00854018 IPI:IPI00854021 RefSeq:NP_001103698.1
RefSeq:NP_001103699.1 RefSeq:NP_001103700.1 RefSeq:NP_001103701.1
RefSeq:NP_001103702.1 RefSeq:NP_001153764.1 RefSeq:NP_001153765.1
RefSeq:NP_034290.2 UniGene:Mm.398543 ProteinModelPortal:Q9Z0H4
SMR:Q9Z0H4 STRING:Q9Z0H4 PhosphoSite:Q9Z0H4 PaxDb:Q9Z0H4
PRIDE:Q9Z0H4 Ensembl:ENSMUST00000002176 Ensembl:ENSMUST00000100429
Ensembl:ENSMUST00000114924 Ensembl:ENSMUST00000114927
Ensembl:ENSMUST00000114934 GeneID:14007 KEGG:mmu:14007
UCSC:uc008ign.1 UCSC:uc008igo.1 UCSC:uc008igp.1 UCSC:uc008igq.2
UCSC:uc008igs.2 UCSC:uc008igt.2 UCSC:uc008igv.2 InParanoid:Q9Z0H4
OMA:TMRNEEL NextBio:284908 Bgee:Q9Z0H4 CleanEx:MM_CUGBP2
Genevestigator:Q9Z0H4 Uniprot:Q9Z0H4
Length = 508
Score = 148 (57.2 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 33/92 (35%), Positives = 50/92 (54%)
Query: 302 SRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMP 360
S+ E +GANL++ +L D+ + ++F FG + S KV +D Q SK GF ++ P
Sbjct: 415 SQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNP 474
Query: 361 EEATRALNEMNGKMIGRKPLYVAVAQRKEERK 392
A A+ MNG IG K L V + + K + K
Sbjct: 475 VSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSK 506
Score = 146 (56.5 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 41/155 (26%), Positives = 74/155 (47%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKR--SSLGYAYVNYSNPQDAANA 85
+ ++VG + ++ +E +L +LF V + V RD+S+ S G +V + + A A
Sbjct: 40 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 99
Query: 86 KEAL-NFMPINGK--PIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTV 142
+ AL N + G PI++ + + S +FI + + + F+ FG +
Sbjct: 100 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDR-KLFIGMVSKKCNENDIRVMFSPFGQI 158
Query: 143 LSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
C++ +G S+G FV F AQNAIK ++
Sbjct: 159 EECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMH 193
Score = 143 (55.4 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 54/206 (26%), Positives = 95/206 (46%)
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFG--FVNFQSPDAA 260
P ++V + + ++++LK++F +G + V++D S + G FV F + AA
Sbjct: 37 PDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA 96
Query: 261 AAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDS 320
A L+ N K G + AD E+ + E K L++ +
Sbjct: 97 LEAQNALH----NIKT-LPGMHHPIQMKPAD------SEKSNAVEDRK---LFIGMVSKK 142
Query: 321 INDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFS---MPEEATRALNEMNGKMIG- 376
N+ ++ +FS FG I C+++ G S+G F FS M + A +A+++ M G
Sbjct: 143 CNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQ-TMEGC 201
Query: 377 RKPLYVAVAQ-RKEERKARLQAQFAQ 401
P+ V A +K++ + RLQ Q AQ
Sbjct: 202 SSPIVVKFADTQKDKEQRRLQQQLAQ 227
Score = 133 (51.9 bits), Expect = 6.7e-16, Sum P(2) = 6.7e-16
Identities = 28/86 (32%), Positives = 51/86 (59%)
Query: 186 VYVGLFVRRQERA-QQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDG 244
+Y +++Q A Q P+ N+++ +L + D+D+ ++F FG + SA V D
Sbjct: 401 LYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQT 460
Query: 245 K-SRCFGFVNFQSPDAAAAAVEKLNG 269
S+CFGFV++ +P +A AA++ +NG
Sbjct: 461 NLSKCFGFVSYDNPVSAQAAIQAMNG 486
Score = 122 (48.0 bits), Expect = 0.00037, P = 0.00037
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQ-SKGYGFVQFENEEAAQNAIKM 175
N+FI +L ++ + F FG V+S KV ID SK +GFV ++N +AQ AI+
Sbjct: 424 NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 483
Query: 176 LNGMLINDKQVYVGL 190
+NG I K++ V L
Sbjct: 484 MNGFQIGMKRLKVQL 498
>RGD|68347 [details] [associations]
symbol:Celf2 "CUGBP, Elav-like family member 2" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006376 "mRNA splice site selection" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360 RGD:68347
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
eggNOG:NOG251494 HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X
GO:GO:0006376 GeneTree:ENSGT00560000076837 CTD:10659 OMA:TMRNEEL
EMBL:AF090695 EMBL:AJ010351 EMBL:AJ010386 EMBL:BC129096
IPI:IPI00212483 IPI:IPI00781372 IPI:IPI00854036 IPI:IPI00854042
RefSeq:NP_058893.2 UniGene:Rn.162247 ProteinModelPortal:Q792H5
SMR:Q792H5 STRING:Q792H5 PhosphoSite:Q792H5 PRIDE:Q792H5
Ensembl:ENSRNOT00000023436 GeneID:29428 KEGG:rno:29428
InParanoid:Q792H5 NextBio:609142 ArrayExpress:Q792H5
Genevestigator:Q792H5 Uniprot:Q792H5
Length = 508
Score = 148 (57.2 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 33/92 (35%), Positives = 50/92 (54%)
Query: 302 SRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMP 360
S+ E +GANL++ +L D+ + ++F FG + S KV +D Q SK GF ++ P
Sbjct: 415 SQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNP 474
Query: 361 EEATRALNEMNGKMIGRKPLYVAVAQRKEERK 392
A A+ MNG IG K L V + + K + K
Sbjct: 475 VSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSK 506
Score = 146 (56.5 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 41/155 (26%), Positives = 74/155 (47%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKR--SSLGYAYVNYSNPQDAANA 85
+ ++VG + ++ +E +L +LF V + V RD+S+ S G +V + + A A
Sbjct: 40 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 99
Query: 86 KEAL-NFMPINGK--PIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTV 142
+ AL N + G PI++ + + S +FI + + + F+ FG +
Sbjct: 100 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDR-KLFIGMVSKKCNENDIRVMFSPFGQI 158
Query: 143 LSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
C++ +G S+G FV F AQNAIK ++
Sbjct: 159 EECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMH 193
Score = 143 (55.4 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 54/206 (26%), Positives = 95/206 (46%)
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFG--FVNFQSPDAA 260
P ++V + + ++++LK++F +G + V++D S + G FV F + AA
Sbjct: 37 PDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA 96
Query: 261 AAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDS 320
A L+ N K G + AD E+ + E K L++ +
Sbjct: 97 LEAQNALH----NIKT-LPGMHHPIQMKPAD------SEKSNAVEDRK---LFIGMVSKK 142
Query: 321 INDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFS---MPEEATRALNEMNGKMIG- 376
N+ ++ +FS FG I C+++ G S+G F FS M + A +A+++ M G
Sbjct: 143 CNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQ-TMEGC 201
Query: 377 RKPLYVAVAQ-RKEERKARLQAQFAQ 401
P+ V A +K++ + RLQ Q AQ
Sbjct: 202 SSPIVVKFADTQKDKEQRRLQQQLAQ 227
Score = 133 (51.9 bits), Expect = 6.7e-16, Sum P(2) = 6.7e-16
Identities = 28/86 (32%), Positives = 51/86 (59%)
Query: 186 VYVGLFVRRQERA-QQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDG 244
+Y +++Q A Q P+ N+++ +L + D+D+ ++F FG + SA V D
Sbjct: 401 LYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQT 460
Query: 245 K-SRCFGFVNFQSPDAAAAAVEKLNG 269
S+CFGFV++ +P +A AA++ +NG
Sbjct: 461 NLSKCFGFVSYDNPVSAQAAIQAMNG 486
Score = 122 (48.0 bits), Expect = 0.00037, P = 0.00037
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQ-SKGYGFVQFENEEAAQNAIKM 175
N+FI +L ++ + F FG V+S KV ID SK +GFV ++N +AQ AI+
Sbjct: 424 NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 483
Query: 176 LNGMLINDKQVYVGL 190
+NG I K++ V L
Sbjct: 484 MNGFQIGMKRLKVQL 498
>UNIPROTKB|E9PC62 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC026887 KO:K13207
GO:GO:0006376 CTD:10659 EMBL:AL157704 EMBL:AL136320 IPI:IPI00845479
RefSeq:NP_006552.3 UniGene:Hs.309288 GeneID:10659 KEGG:hsa:10659
HGNC:HGNC:2550 ChiTaRS:CELF2 GenomeRNAi:10659 NextBio:40529
OMA:TMRNEEL EMBL:AL136369 EMBL:AL138769 EMBL:AL162408 SMR:E9PC62
Ensembl:ENST00000450189 Ensembl:ENST00000542579 UCSC:uc001ikl.4
Uniprot:E9PC62
Length = 521
Score = 148 (57.2 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 33/92 (35%), Positives = 50/92 (54%)
Query: 302 SRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMP 360
S+ E +GANL++ +L D+ + ++F FG + S KV +D Q SK GF ++ P
Sbjct: 428 SQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNP 487
Query: 361 EEATRALNEMNGKMIGRKPLYVAVAQRKEERK 392
A A+ MNG IG K L V + + K + K
Sbjct: 488 VSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSK 519
Score = 146 (56.5 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 41/155 (26%), Positives = 74/155 (47%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKR--SSLGYAYVNYSNPQDAANA 85
+ ++VG + ++ +E +L +LF V + V RD+S+ S G +V + + A A
Sbjct: 47 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 106
Query: 86 KEAL-NFMPINGK--PIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTV 142
+ AL N + G PI++ + + S +FI + + + F+ FG +
Sbjct: 107 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDR-KLFIGMVSKKCNENDIRVMFSPFGQI 165
Query: 143 LSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
C++ +G S+G FV F AQNAIK ++
Sbjct: 166 EECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMH 200
Score = 143 (55.4 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 54/206 (26%), Positives = 95/206 (46%)
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFG--FVNFQSPDAA 260
P ++V + + ++++LK++F +G + V++D S + G FV F + AA
Sbjct: 44 PDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA 103
Query: 261 AAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDS 320
A L+ N K G + AD E+ + E K L++ +
Sbjct: 104 LEAQNALH----NIKT-LPGMHHPIQMKPAD------SEKSNAVEDRK---LFIGMVSKK 149
Query: 321 INDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFS---MPEEATRALNEMNGKMIG- 376
N+ ++ +FS FG I C+++ G S+G F FS M + A +A+++ M G
Sbjct: 150 CNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQ-TMEGC 208
Query: 377 RKPLYVAVAQ-RKEERKARLQAQFAQ 401
P+ V A +K++ + RLQ Q AQ
Sbjct: 209 SSPIVVKFADTQKDKEQRRLQQQLAQ 234
Score = 133 (51.9 bits), Expect = 7.2e-16, Sum P(2) = 7.2e-16
Identities = 28/86 (32%), Positives = 51/86 (59%)
Query: 186 VYVGLFVRRQERA-QQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDG 244
+Y +++Q A Q P+ N+++ +L + D+D+ ++F FG + SA V D
Sbjct: 414 LYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQT 473
Query: 245 K-SRCFGFVNFQSPDAAAAAVEKLNG 269
S+CFGFV++ +P +A AA++ +NG
Sbjct: 474 NLSKCFGFVSYDNPVSAQAAIQAMNG 499
Score = 122 (48.0 bits), Expect = 0.00038, P = 0.00038
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQ-SKGYGFVQFENEEAAQNAIKM 175
N+FI +L ++ + F FG V+S KV ID SK +GFV ++N +AQ AI+
Sbjct: 437 NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 496
Query: 176 LNGMLINDKQVYVGL 190
+NG I K++ V L
Sbjct: 497 MNGFQIGMKRLKVQL 511
Score = 112 (44.5 bits), Expect = 6.6e-14, Sum P(2) = 6.6e-14
Identities = 47/195 (24%), Positives = 87/195 (44%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNG---QSKGYGFVQFENEEAA---QN 171
+F+ + S K L + F +G V V D + QSKG FV F +AA QN
Sbjct: 49 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 108
Query: 172 A---IKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFG 228
A IK L GM + + ++ + + N + + +++ +++ + D++ +F
Sbjct: 109 ALHNIKTLPGM-------HHPIQMKPADSEKSN-AVEDRKLFIGMVSKKCNENDIRVMFS 160
Query: 229 HFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAER 288
FG I +++ DG SR FV F + A A++ ++ + + G + +
Sbjct: 161 PFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTME-----GCSSPIVVK 215
Query: 289 EADLRAKFEQERISR 303
AD + EQ R+ +
Sbjct: 216 FADTQKDKEQRRLQQ 230
>SGD|S000004961 [details] [associations]
symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
Uniprot:P32588
Length = 453
Score = 215 (80.7 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 51/185 (27%), Positives = 94/185 (50%)
Query: 30 LYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL 89
LYVG+L++ + E L F + ++++ D++ ++ + YA+V Y DA A + L
Sbjct: 77 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKN-VNYAFVEYHQSHDANIALQTL 135
Query: 90 NFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAI 149
N I ++I ++ + N+F+ +L+ ++D++ L + F F + LS V
Sbjct: 136 NGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMW 195
Query: 150 D-SNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTN 208
D G S+GYGFV F +++ AQNA+ + G +N + + + +R N + N
Sbjct: 196 DMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNNNNYQQR-RN 254
Query: 209 VYVNN 213
Y NN
Sbjct: 255 -YGNN 258
Score = 205 (77.2 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 59/206 (28%), Positives = 96/206 (46%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
+++ NLD +I L F G + + K+ ID N ++ Y FV++ A A++ LN
Sbjct: 77 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLN 136
Query: 178 GMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAI 237
G I + V + + +QQ+ S N++V +L V DE L+ F F + S
Sbjct: 137 GKQIENNIVKINWAFQ----SQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGH 192
Query: 238 VMKDSD-GKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKF 296
VM D G SR +GFV+F S D A A++ + G N + + A KR + +
Sbjct: 193 VMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNNN---NY 249
Query: 297 EQERISRYEKLKGANLYLKNLDDSIN 322
+Q R G Y N ++++N
Sbjct: 250 QQRRNYGNNNRGGFRQYNSNNNNNMN 275
Score = 177 (67.4 bits), Expect = 2.1e-10, Sum P(3) = 2.1e-10
Identities = 49/182 (26%), Positives = 94/182 (51%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLN 268
+YV NL + +T++ LK+ F G I + +M D + K+ + FV + A A++ LN
Sbjct: 77 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLN 136
Query: 269 GTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKE 328
G + + + A F+ ++ S + NL++ +L+ +++DE L+
Sbjct: 137 GKQIENNIVKINWA-------------FQSQQSSSDDTF---NLFVGDLNVNVDDETLRN 180
Query: 329 LFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQR 387
F +F + S VM D Q G S+G GF +F+ ++A A++ M G+ + +PL + A +
Sbjct: 181 AFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 240
Query: 388 KE 389
++
Sbjct: 241 RD 242
Score = 136 (52.9 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 27/87 (31%), Positives = 49/87 (56%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+L+VGDL NV++ L + F +S V D SS GY +V++++ DA NA ++
Sbjct: 163 NLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS 222
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGY 115
+ +NG+P+RI ++ + + + Y
Sbjct: 223 MQGQDLNGRPLRINWAAKRDNNNNNNY 249
Score = 71 (30.1 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 18/68 (26%), Positives = 31/68 (45%)
Query: 200 QNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDA 259
++ P+ T Y+ N+ T+ DL +F +FG I K K CF + + + +
Sbjct: 334 RSAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILD---FKHYPEKGCCF--IKYDTHEQ 388
Query: 260 AAAAVEKL 267
AA + L
Sbjct: 389 AAVCIVAL 396
Score = 42 (19.8 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 407 GMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQAAGY 447
GM P + G+P P G Q G P + PQA +
Sbjct: 291 GMPPSSMGMPIGAMPLPSQGQPQQSQTIGLPPQVNPQAVDH 331
Score = 42 (19.8 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 15/51 (29%), Positives = 20/51 (39%)
Query: 313 YLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEA 363
Y+ N+ + L LF FG I K H KG F + E+A
Sbjct: 344 YIGNIPHFATEADLIPLFQNFGFILDFK-----HYPEKGCCFIKYDTHEQA 389
Score = 41 (19.5 bits), Expect = 2.1e-10, Sum P(3) = 2.1e-10
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 147 VAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVG 189
VA++ N + Q EN+ + A + G +D+ +YVG
Sbjct: 40 VAVEGNSEQAEDN--QGENDPSVVPANAITGGRETSDRVLYVG 80
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 240 (89.5 bits), Expect = 2.1e-17, P = 2.1e-17
Identities = 57/205 (27%), Positives = 112/205 (54%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
S N ++++GDL+Q ++ES L+ FSQ +V+SV++ R++ S Y +V ++ A
Sbjct: 79 SSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAA 138
Query: 83 ANAKEALN--FMPINGKPIRIMYSHRDPSIRKSGYGN---VFIKNLDTSIDNKALCDTFA 137
++ N MP +P R+ ++ +++ G+ +F+ +L + + + L DTFA
Sbjct: 139 EKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFA 198
Query: 138 A-FGTVLSCKVAIDSN-GQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQ 195
+ + ++ KV +D+N G SKGYGFV+F +E A+ +NG+ + + + +G+ ++
Sbjct: 199 SRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKK 258
Query: 196 ERAQQNVSPK---FTNVYVNNLAET 217
A + S + + Y +N A T
Sbjct: 259 PSAHEQYSSQAVILSGGYASNGAAT 283
Score = 216 (81.1 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 82/320 (25%), Positives = 151/320 (47%)
Query: 153 GQSKGYGFVQFENEEAAQNAIKMLNG-MLINDKQVY----VGLFVRRQERAQQNVSPKFT 207
GQS+ YGFV+F AA+ ++ NG M+ N +Q + G F ++RA+ F+
Sbjct: 122 GQSERYGFVEFNTHAAAEKVLQSYNGTMMPNTEQPFRLNWAG-FSTGEKRAE--TGSDFS 178
Query: 208 NVYVNNLAETVTDEDLKKIFG-HFGTITSAIVMKDSD-GKSRCFGFVNFQSPDAAAAAVE 265
++V +LA VTD L+ F + ++ A V+ D++ G S+ +GFV F + A+
Sbjct: 179 -IFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMT 237
Query: 266 KLNGTTNNDKVWYVGRA--QKRAERE------ADLRAKFEQERISRY-EKLKG--AN--L 312
++NG + + +G A +K + E L + + + + G +N +
Sbjct: 238 EMNGVYCSSRAMRIGVATPKKPSAHEQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTI 297
Query: 313 YLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG 372
++ LD + DE+L++ F++FG + S K+ KG GF FS A A+ +++G
Sbjct: 298 FVGGLDSEVTDEELRQSFNQFGEVVSVKIPA-----GKGCGFVQFSDRSSAQEAIQKLSG 352
Query: 373 KMIGRKPLYVAVAQRKEERKARLQAQFAQIRAPGGMSPLASGIPGYHHGAPRLGPQQLYY 432
+IG++ + ++ + ++ R + +Q GG + GY +GA + +Y
Sbjct: 353 AIIGKQAVRLSWGRSPANKQMRTDSG-SQWN--GGYNG-RQNYGGYGYGASQNQDSGMY- 407
Query: 433 GQGTPGLMPPQAAGYGFQQQ 452
T + YG QQ
Sbjct: 408 --ATGAAYGASSNRYGNHQQ 425
Score = 161 (61.7 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 49/196 (25%), Positives = 93/196 (47%)
Query: 200 QNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSD-GKSRCFGFVNFQSPD 258
Q+ S +++ +L + + + L F G + S ++++ G+S +GFV F +
Sbjct: 77 QSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHA 136
Query: 259 AAAAAVEKLNGTT--NNDKVWYVGRAQ-KRAEREADLRAKFEQERISRYEKLKGANLYLK 315
AA ++ NGT N ++ + + A E+ A+ + F ++++
Sbjct: 137 AAEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDF--------------SIFVG 182
Query: 316 NLDDSINDEKLKELF-SEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEMNGK 373
+L + D L++ F S + ++ KV+VD + G SKG GF F E +RA+ EMNG
Sbjct: 183 DLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGV 242
Query: 374 MIGRKPLYVAVAQRKE 389
+ + + VA K+
Sbjct: 243 YCSSRAMRIGVATPKK 258
>ZFIN|ZDB-GENE-050208-746 [details] [associations]
symbol:celf5 "cugbp, Elav-like family member 5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050208-746 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX510913 EMBL:AL929135 EMBL:BX664613 IPI:IPI00633183
Ensembl:ENSDART00000093310 Bgee:F1R633 Uniprot:F1R633
Length = 597
Score = 153 (58.9 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
Identities = 55/238 (23%), Positives = 104/238 (43%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKE 87
+ L++G + +N+ E L LF Q ++ + V +D+ G A++ Y + A A+
Sbjct: 136 IKLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQN 195
Query: 88 ALN---FMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS 144
AL+ +P +PI++ + D R +F+ L+ + + F +G +
Sbjct: 196 ALHEQKTLPGMTRPIQVKPA--DSESRGEDR-KLFVGMLNKQQTEEDVYRLFEPYGVIEE 252
Query: 145 CKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSP 204
C V +G SKG FV+F AQ+AI L+G + + G + A ++
Sbjct: 253 CTVLRGPDGNSKGCAFVKFSTHAEAQSAISALHG----SQTMPTGSDSLLPQGASSSLVV 308
Query: 205 KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAA 262
KF + + T+ ++++ G FG AI + S + + Q+ AA+
Sbjct: 309 KFADT---DKERTI--RRMQQMVGQFGIFNPAIALPFSTYSTYAHALMQQQAALMAAS 361
Score = 149 (57.5 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 85/381 (22%), Positives = 154/381 (40%)
Query: 93 PINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS- 151
P+NG I + +++ +FI + +++ K L F FG + V D
Sbjct: 114 PMNGSE-SISIHPENGTMKDQDAIKLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRY 172
Query: 152 NGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSP-KFTNVY 210
G KG F+ + A ++AIK N + ++++ G+ Q + + S + ++
Sbjct: 173 TGMHKGCAFLTYC---ARESAIKAQNAL--HEQKTLPGMTRPIQVKPADSESRGEDRKLF 227
Query: 211 VNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGT 270
V L + T+ED+ ++F +G I V++ DG S+ FV F + A +A+ L+G+
Sbjct: 228 VGMLNKQQTEEDVYRLFEPYGVIEECTVLRGPDGNSKGCAFVKFSTHAEAQSAISALHGS 287
Query: 271 ----TNNDKVWYVGRAQKRAEREADLRAKFEQER-ISRYEKLKGANLYLKNLDDSINDEK 325
T +D + G + + AD ++ER I R +++ G I +
Sbjct: 288 QTMPTGSDSLLPQGASSSLVVKFADT----DKERTIRRMQQMVG--------QFGIFNPA 335
Query: 326 LKELFSEFGTITSCKVMVDQHGFSKGS--GFAAFSM--PEEATRALNEMNGKMIGRKPLY 381
+ FS + T +M Q S G+ A S+ P + +N + P+
Sbjct: 336 IALPFSTYSTYAHA-LMQQQAALMAASHGGYLAPSVAFPTTQIHQMGALNINSLPPTPM- 393
Query: 382 VAVAQRKEERKARLQAQFAQIRA---PGGMSPLASGIPGYHHGAPRLGPQ-QLYYGQGTP 437
V+ + A L + A I P ++P+ +G H P P + Y G P
Sbjct: 394 TPVSGEFHQTLAGLSSPPANITTSAVPSIVTPIVNGFTSIPH-QPNGHPAVEAVYTNGLP 452
Query: 438 GLMPPQAAGYGFQQQVFPGLR 458
QQ F G++
Sbjct: 453 PYSTQSPTAADTLQQAFTGVQ 473
Score = 142 (55.0 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
Identities = 39/136 (28%), Positives = 61/136 (44%)
Query: 255 QSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYL 314
QSP AA + G ++ + +Q++ E +G NL++
Sbjct: 457 QSPTAADTLQQAFTGVQQYTAIYPATTLTPIGQSLPQPPQVIQQQQQREGEGPEGCNLFI 516
Query: 315 KNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEMNGK 373
+L D +L ++F FGT+ S KV +D+ SK GF +F P A A+ MNG
Sbjct: 517 YHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGF 576
Query: 374 MIGRKPLYVAVAQRKE 389
IG K L V + + K+
Sbjct: 577 QIGMKRLKVQLKRPKD 592
Score = 142 (55.0 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 27/79 (34%), Positives = 52/79 (65%)
Query: 192 VRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFG 250
V +Q++ ++ P+ N+++ +L + D +L ++F FGT+ S+ V D + +S+CFG
Sbjct: 497 VIQQQQQREGEGPEGCNLFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFG 556
Query: 251 FVNFQSPDAAAAAVEKLNG 269
FV+F +P +A AA++ +NG
Sbjct: 557 FVSFDNPASAQAAIQAMNG 575
Score = 137 (53.3 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 32/75 (42%), Positives = 45/75 (60%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKM 175
N+FI +L + L F FGTV+S KV +D + QSK +GFV F+N +AQ AI+
Sbjct: 513 NLFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQA 572
Query: 176 LNGMLINDKQVYVGL 190
+NG I K++ V L
Sbjct: 573 MNGFQIGMKRLKVQL 587
>RGD|1563168 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0007283
"spermatogenesis" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0030317
"sperm motility" evidence=ISO] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1563168 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
GO:GO:0048026 GeneTree:ENSGT00560000076837 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AC133978 IPI:IPI00204869
ProteinModelPortal:D4A916 Ensembl:ENSRNOT00000028324
UCSC:RGD:1563168 Uniprot:D4A916
Length = 494
Score = 159 (61.0 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 66/263 (25%), Positives = 102/263 (38%)
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAA 262
P ++V + + ++DLK IF FG I V+KD G + F+ + + D+A
Sbjct: 4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALK 63
Query: 263 AVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
A L+ ++ G + + AD ++ E + L++ L
Sbjct: 64 AQSALH-----EQKTLPGMNRPIQVKPADSESRGEDRK-----------LFVGMLGKQQT 107
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMI---GRKP 379
DE ++++F FGTI C V+ G SKG F F EA A+N ++
Sbjct: 108 DEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSS 167
Query: 380 LYVAVAQRKEERKARLQAQFA-QIRAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPG 438
L V A ++ER R Q A Q+ G SP+A Y L QQ
Sbjct: 168 LVVKFADTEKERGLRRMQQVATQL---GMFSPIALQFGAYSAYTQALMQQQAALVAAHSA 224
Query: 439 LMPPQAAGYGFQQQVFPGLRPGG 461
+ P A Q Q + G
Sbjct: 225 YLSPMATMAAVQMQHMAAINANG 247
Score = 148 (57.2 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
Identities = 28/78 (35%), Positives = 51/78 (65%)
Query: 193 RRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGF 251
++Q++ QQ P N+++ +L + TD ++ ++F FG + SA V D + +S+CFGF
Sbjct: 395 QQQQQQQQQQRPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGF 454
Query: 252 VNFQSPDAAAAAVEKLNG 269
V+F +P +A AA++ +NG
Sbjct: 455 VSFDNPASAQAAIQAMNG 472
Score = 144 (55.7 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
Identities = 41/153 (26%), Positives = 72/153 (47%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKE 87
+ L+VG + +++ E L +F Q ++ + V +D+ G A++ Y A A+
Sbjct: 7 IKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQS 66
Query: 88 ALN---FMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS 144
AL+ +P +PI++ + D R +F+ L ++ + F FGT+
Sbjct: 67 ALHEQKTLPGMNRPIQVKPA--DSESRGEDR-KLFVGMLGKQQTDEDVRKMFEPFGTIDE 123
Query: 145 CKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
C V +G SKG FV+F+ AQ AI L+
Sbjct: 124 CTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLH 156
Score = 139 (54.0 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 42/155 (27%), Positives = 75/155 (48%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKML 176
+F+ + ++ K L F FG + V D G KG F+ + A +A+K
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYC---ARDSALKAQ 65
Query: 177 NGMLINDKQVYVGLFVRRQERAQQNVSP-KFTNVYVNNLAETVTDEDLKKIFGHFGTITS 235
+ + ++++ G+ Q + + S + ++V L + TDED++K+F FGTI
Sbjct: 66 SAL--HEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDE 123
Query: 236 AIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGT 270
V++ DG S+ FV FQ+ A AA+ L+ +
Sbjct: 124 CTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSS 158
Score = 136 (52.9 bits), Expect = 4.9e-16, Sum P(2) = 4.9e-16
Identities = 30/97 (30%), Positives = 52/97 (53%)
Query: 297 EQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFA 355
+Q++ + ++ G N+++ +L D ++ ++F FG + S KV VD+ SK GF
Sbjct: 396 QQQQQQQQQRPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFV 455
Query: 356 AFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERK 392
+F P A A+ MNG IG K L V + + K+ +
Sbjct: 456 SFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 492
Score = 134 (52.2 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKM 175
N+FI +L + + F FG V+S KV +D + QSK +GFV F+N +AQ AI+
Sbjct: 410 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 469
Query: 176 LNGMLINDKQVYVGL 190
+NG I K++ V L
Sbjct: 470 MNGFQIGMKRLKVQL 484
>UNIPROTKB|Q7T2T1 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754 EMBL:AY288985
EMBL:AY288986 IPI:IPI00574339 IPI:IPI00587312 RefSeq:NP_989591.1
UniGene:Gga.4919 ProteinModelPortal:Q7T2T1 SMR:Q7T2T1 STRING:Q7T2T1
PRIDE:Q7T2T1 GeneID:374111 KEGG:gga:374111 CTD:10659
InParanoid:Q7T2T1 NextBio:20813628 Uniprot:Q7T2T1
Length = 484
Score = 148 (57.2 bits), Expect = 3.1e-17, Sum P(2) = 3.1e-17
Identities = 33/92 (35%), Positives = 50/92 (54%)
Query: 302 SRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMP 360
S+ E +GANL++ +L D+ + ++F FG + S KV +D Q SK GF ++ P
Sbjct: 391 SQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNP 450
Query: 361 EEATRALNEMNGKMIGRKPLYVAVAQRKEERK 392
A A+ MNG IG K L V + + K + K
Sbjct: 451 VSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSK 482
Score = 143 (55.4 bits), Expect = 3.1e-17, Sum P(2) = 3.1e-17
Identities = 41/155 (26%), Positives = 73/155 (47%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKR--SSLGYAYVNYSNPQDAANA 85
+ +VG + ++ +E +L +LF V + V RD+S+ S G +V + + A A
Sbjct: 16 IKTFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 86 KEAL-NFMPINGK--PIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTV 142
+ AL N + G PI++ + + S +FI + + + F+ FG +
Sbjct: 76 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDR-KLFIGMVSKKCNENDIRVMFSPFGQI 134
Query: 143 LSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
C++ +G S+G FV F AQNAIK ++
Sbjct: 135 EECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMH 169
Score = 142 (55.0 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 54/206 (26%), Positives = 94/206 (45%)
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFG--FVNFQSPDAA 260
P +V + + ++++LK++F +G + V++D S + G FV F + AA
Sbjct: 13 PDAIKTFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA 72
Query: 261 AAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDS 320
A L+ N K G + AD E+ + E K L++ +
Sbjct: 73 LEAQNALH----NIKT-LPGMHHPIQMKPAD------SEKSNAVEDRK---LFIGMVSKK 118
Query: 321 INDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFS---MPEEATRALNEMNGKMIG- 376
N+ ++ +FS FG I C+++ G S+G F FS M + A +A+++ M G
Sbjct: 119 CNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQ-TMEGC 177
Query: 377 RKPLYVAVAQ-RKEERKARLQAQFAQ 401
P+ V A +K++ + RLQ Q AQ
Sbjct: 178 SSPIVVKFADTQKDKEQRRLQQQLAQ 203
Score = 133 (51.9 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 28/86 (32%), Positives = 51/86 (59%)
Query: 186 VYVGLFVRRQERA-QQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDG 244
+Y +++Q A Q P+ N+++ +L + D+D+ ++F FG + SA V D
Sbjct: 377 LYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQT 436
Query: 245 K-SRCFGFVNFQSPDAAAAAVEKLNG 269
S+CFGFV++ +P +A AA++ +NG
Sbjct: 437 NLSKCFGFVSYDNPVSAQAAIQAMNG 462
Score = 122 (48.0 bits), Expect = 0.00034, P = 0.00034
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQ-SKGYGFVQFENEEAAQNAIKM 175
N+FI +L ++ + F FG V+S KV ID SK +GFV ++N +AQ AI+
Sbjct: 400 NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 459
Query: 176 LNGMLINDKQVYVGL 190
+NG I K++ V L
Sbjct: 460 MNGFQIGMKRLKVQL 474
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 239 (89.2 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 85/273 (31%), Positives = 138/273 (50%)
Query: 23 SGYGNV-SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQD 81
SG +V +L+VGDL ++E+ L+ FS +V SV+V R++ S GY +V + +
Sbjct: 113 SGGDDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSA 172
Query: 82 AANAKEALN--FMPINGKPIRIMY-SHRDPSIRKSGYG---NVFIKNLDTSIDNKALCDT 135
A A ++ + MP +P R+ + S R S G ++F+ +L + + L +T
Sbjct: 173 AEEALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLET 232
Query: 136 FAA-FGTVLSCKVAIDSN-GQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVR 193
FA + +V KV IDSN G+SKGYGFV+F +E A+ +NG + +Q+ VG+
Sbjct: 233 FAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATP 292
Query: 194 RQERA--QQNVSPKFTNV--YVNNLAETVTDEDLKKIF--GHFGTITSAIVMKD-SD-GK 245
++ A QQN S T + N + + + + IF G +T +M+ SD G+
Sbjct: 293 KRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGE 352
Query: 246 --------SRCFGFVNFQSPDAAAAAVEKLNGT 270
+ GFV F + +A A+ LNGT
Sbjct: 353 VVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGT 385
Score = 232 (86.7 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 78/267 (29%), Positives = 135/267 (50%)
Query: 127 IDNKALCDTFAAFGTVLSCKVAIDSNG-QSKGYGFVQFENEEAAQNAIKMLNGMLI-NDK 184
+D L F+ V S KV + QS+GYGFV+F + AA+ A++ +G+ + N +
Sbjct: 130 MDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSFSGVTMPNAE 189
Query: 185 QVYV---GLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIF-GHFGTITSAIVMK 240
Q + F ++RA +N P + ++V +LA V+D L + F G + ++ A V+
Sbjct: 190 QPFRLNWASFSTGEKRASEN-GPDLS-IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVI 247
Query: 241 DSD-GKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQ-KRAER-------EAD 291
DS+ G+S+ +GFV F + + A+ ++NG + + VG A KRA +A
Sbjct: 248 DSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQAL 307
Query: 292 LRAKFEQERISRYE-KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSK 350
A S + + + +++ LD + +E L + FS+FG + S K+ V K
Sbjct: 308 TLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPV-----GK 362
Query: 351 GSGFAAFSMPEEATRALNEMNGKMIGR 377
G GF F+ + A A+ +NG +IG+
Sbjct: 363 GCGFVQFANRQSAEEAIGNLNGTVIGK 389
Score = 152 (58.6 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 49/184 (26%), Positives = 84/184 (45%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDG-KSRCFGFVNFQSPDAAAAAVEKL 267
++V +L + + L F H ++S V+++ +S +GFV F S AA A++
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 180
Query: 268 NGTTNNDKVWYVGRAQKRAEREADLR-AKFEQERISRYEKLKGANLYLKNLDDSINDEKL 326
+G T AE+ L A F E ++++ +L ++D L
Sbjct: 181 SGVT-----------MPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVL 229
Query: 327 KELFS-EFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384
E F+ + ++ KV++D + G SKG GF F E +RA+ EMNG + + V +
Sbjct: 230 LETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGI 289
Query: 385 AQRK 388
A K
Sbjct: 290 ATPK 293
Score = 120 (47.3 bits), Expect = 0.00050, P = 0.00050
Identities = 34/108 (31%), Positives = 50/108 (46%)
Query: 83 ANAKEALNFMPING-KPIRIMYSHRDPSIRKSGYGN---VFIKNLDTSIDNKALCDTFAA 138
A K A + NG + + + H G N +F+ LD + + L F+
Sbjct: 290 ATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSD 349
Query: 139 FGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQV 186
FG V+S K+ + KG GFVQF N ++A+ AI LNG +I V
Sbjct: 350 FGEVVSVKIPV-----GKGCGFVQFANRQSAEEAIGNLNGTVIGKNTV 392
>UNIPROTKB|F1PXQ8 [details] [associations]
symbol:CELF5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13207
GeneTree:ENSGT00560000076837 CTD:60680 OMA:DGMKDLD
EMBL:AAEX03012581 RefSeq:XP_854891.3 Ensembl:ENSCAFT00000030591
GeneID:612072 KEGG:cfa:612072 Uniprot:F1PXQ8
Length = 485
Score = 158 (60.7 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
Identities = 43/154 (27%), Positives = 72/154 (46%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKE 87
+ L+VG + +N++E L LF Q ++ + V +D G A++ Y A A+
Sbjct: 45 IKLFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQT 104
Query: 88 ALN---FMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS 144
AL+ +P +PI++ + D R +F+ L+ + + F FG +
Sbjct: 105 ALHEQKTLPGMARPIQVKPA--DSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDE 162
Query: 145 CKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNG 178
C V +G SKG FV+F + AQ AI L+G
Sbjct: 163 CTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHG 196
Score = 144 (55.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 53/199 (26%), Positives = 89/199 (44%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVEKL 267
++V + + ++DLK +F FG I V+KD G + F+ + + D+A A L
Sbjct: 47 LFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTAL 106
Query: 268 NGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLK 327
+ ++ G A+ + AD ++ ++R L++ L+ ++E +
Sbjct: 107 H-----EQKTLPGMARPIQVKPADSESRGGRDR----------KLFVGMLNKQQSEEDVL 151
Query: 328 ELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGK--MIGRKP-LYVAV 384
LF FG I C V+ G SKG F FS EA A++ ++G M G L V
Sbjct: 152 RLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKF 211
Query: 385 AQRKEERKAR-LQAQFAQI 402
A +ER R +Q Q+
Sbjct: 212 ADTDKERTLRRMQQMVGQL 230
Score = 132 (51.5 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
Identities = 31/83 (37%), Positives = 45/83 (54%)
Query: 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRA 366
+G NL++ +L D +L ++F FG I S KV +D+ SK GF +F P A A
Sbjct: 398 EGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTA 457
Query: 367 LNEMNGKMIGRKPLYVAVAQRKE 389
+ MNG IG K L V + + K+
Sbjct: 458 IQAMNGFQIGMKRLKVQLKRPKD 480
Score = 132 (51.5 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKM 175
N+FI +L + L F FG ++S KV +D + QSK +GFV F+N +AQ AI+
Sbjct: 401 NLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTAIQA 460
Query: 176 LNGMLINDKQVYVGL 190
+NG I K++ V L
Sbjct: 461 MNGFQIGMKRLKVQL 475
Score = 131 (51.2 bits), Expect = 4.2e-17, Sum P(2) = 4.2e-17
Identities = 26/72 (36%), Positives = 45/72 (62%)
Query: 199 QQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSP 257
QQ P+ N+++ +L + D +L ++F FG I S+ V D + +S+CFGFV+F +P
Sbjct: 392 QQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNP 451
Query: 258 DAAAAAVEKLNG 269
+A A++ +NG
Sbjct: 452 ASAQTAIQAMNG 463
Score = 131 (51.2 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
Identities = 41/156 (26%), Positives = 73/156 (46%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKML 176
+F+ + ++D K L F FG + V D G KG F+ + A +AIK
Sbjct: 47 LFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYC---ARDSAIKAQ 103
Query: 177 NGMLINDKQVYVGLFVRRQERAQQNVSP--KFTNVYVNNLAETVTDEDLKKIFGHFGTIT 234
+ ++++ G+ Q + + S + ++V L + ++ED+ ++F FG I
Sbjct: 104 TAL--HEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVID 161
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGT 270
V++ DG S+ FV F S A AA+ L+G+
Sbjct: 162 ECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGS 197
>ZFIN|ZDB-GENE-030826-35 [details] [associations]
symbol:celf2 "cugbp, Elav-like family member 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030826-35 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:AL935165 EMBL:BX511190 EMBL:CABZ01029785 EMBL:CABZ01029786
EMBL:CABZ01029787 IPI:IPI00994559 Ensembl:ENSDART00000129320
ArrayExpress:E7F7K3 Bgee:E7F7K3 Uniprot:E7F7K3
Length = 585
Score = 149 (57.5 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 33/92 (35%), Positives = 50/92 (54%)
Query: 302 SRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMP 360
S+ E +GANL++ +L D+ + ++F FG + S KV +D Q SK GF ++ P
Sbjct: 492 SQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNP 551
Query: 361 EEATRALNEMNGKMIGRKPLYVAVAQRKEERK 392
A A+ MNG IG K L V + + K + K
Sbjct: 552 VSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSK 583
Score = 144 (55.7 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 39/155 (25%), Positives = 74/155 (47%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKR--SSLGYAYVNYSNPQDAANA 85
+ ++VG + ++ +E +L +LF V + + RD+S+ S G +V + + A A
Sbjct: 115 IKMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFVTFYTRKAALEA 174
Query: 86 KEAL-NFMPINGK--PIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTV 142
+ AL N + G PI++ + + S +FI + + + F+ +G +
Sbjct: 175 QNALHNIKTLTGMHHPIQMKPADSEKSNAVEDR-KLFIGMVSKKCNENDIRVMFSPYGQI 233
Query: 143 LSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
C++ +G S+G FV F AQNAIK ++
Sbjct: 234 EECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMH 268
Score = 141 (54.7 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 52/206 (25%), Positives = 95/206 (46%)
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFG--FVNFQSPDAA 260
P ++V + + ++++LK++F +G + +++D S + G FV F + AA
Sbjct: 112 PDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFVTFYTRKAA 171
Query: 261 AAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDS 320
A L+ N K G + AD E+ + E K L++ +
Sbjct: 172 LEAQNALH----NIKT-LTGMHHPIQMKPAD------SEKSNAVEDRK---LFIGMVSKK 217
Query: 321 INDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFS---MPEEATRALNEMNGKMIG- 376
N+ ++ +FS +G I C+++ G S+G F FS M + A +A+++ M G
Sbjct: 218 CNENDIRVMFSPYGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQ-TMEGC 276
Query: 377 RKPLYVAVAQ-RKEERKARLQAQFAQ 401
P+ V A +K++ + RLQ Q AQ
Sbjct: 277 SSPMVVKFADTQKDKEQRRLQQQLAQ 302
Score = 134 (52.2 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 28/86 (32%), Positives = 51/86 (59%)
Query: 186 VYVGLFVRRQERA-QQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDG 244
+Y +++Q A Q P+ N+++ +L + D+D+ ++F FG + SA V D
Sbjct: 478 LYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVVSAKVFIDKQT 537
Query: 245 K-SRCFGFVNFQSPDAAAAAVEKLNG 269
S+CFGFV++ +P +A AA++ +NG
Sbjct: 538 NLSKCFGFVSYDNPVSAQAAIQAMNG 563
Score = 121 (47.7 bits), Expect = 0.00058, P = 0.00058
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQ-SKGYGFVQFENEEAAQNAIKM 175
N+FI +L ++ + F FG V+S KV ID SK +GFV ++N +AQ AI+
Sbjct: 501 NLFIYHLPQEFGDQDILQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 560
Query: 176 LNGMLINDKQVYVGL 190
+NG I K++ V L
Sbjct: 561 MNGFQIGMKRLKVQL 575
Score = 112 (44.5 bits), Expect = 7.3e-14, Sum P(2) = 7.3e-14
Identities = 45/195 (23%), Positives = 87/195 (44%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNG---QSKGYGFVQFENEEAA---QN 171
+F+ + S K L + F +G V + D + QSKG FV F +AA QN
Sbjct: 117 MFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFVTFYTRKAALEAQN 176
Query: 172 A---IKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFG 228
A IK L GM + + ++ + + N + + +++ +++ + D++ +F
Sbjct: 177 ALHNIKTLTGM-------HHPIQMKPADSEKSN-AVEDRKLFIGMVSKKCNENDIRVMFS 228
Query: 229 HFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAER 288
+G I +++ DG SR FV F + A A++ ++ + + G + +
Sbjct: 229 PYGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTME-----GCSSPMVVK 283
Query: 289 EADLRAKFEQERISR 303
AD + EQ R+ +
Sbjct: 284 FADTQKDKEQRRLQQ 298
>UNIPROTKB|A7MB95 [details] [associations]
symbol:CUGBP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0042835 "BRE binding" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:PTLYNQS EMBL:DAAA02041602
EMBL:DAAA02041603 EMBL:DAAA02041604 EMBL:BC151433 IPI:IPI00824850
RefSeq:NP_001094682.1 UniGene:Bt.16531 SMR:A7MB95 STRING:A7MB95
Ensembl:ENSBTAT00000003274 GeneID:540475 KEGG:bta:540475
InParanoid:A7MB95 NextBio:20878658 Uniprot:A7MB95
Length = 486
Score = 152 (58.6 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
Identities = 34/92 (36%), Positives = 50/92 (54%)
Query: 302 SRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMP 360
S+ E +GANL++ +L D+ L ++F FG + S KV +D Q SK GF ++ P
Sbjct: 393 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNP 452
Query: 361 EEATRALNEMNGKMIGRKPLYVAVAQRKEERK 392
A A+ MNG IG K L V + + K + K
Sbjct: 453 VSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 484
Score = 139 (54.0 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 58/230 (25%), Positives = 105/230 (45%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFG--FVNFQSPDAAAAAVE 265
++V + T +++DL+++F +G + V++D S + G FV F + AA A
Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 266 KLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEK 325
L+ N KV G + AD E+ + E K L++ + +
Sbjct: 78 ALH----NMKV-LPGMHHPIQMKPAD------SEKNNAVEDRK---LFIGMISKKCTEND 123
Query: 326 LKELFSEFGTITSCKVMVDQHGFSKGSGFAAFS---MPEEATRALNEMNGKMIG-RKPLY 381
++ +FS FG I C+++ G S+G F F+ M + A +A+++ M G P+
Sbjct: 124 IRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQ-TMEGCSSPMV 182
Query: 382 VAVAQRKEERKARLQAQFAQIRAPGGMSPL-ASGIPGYHHGAPRLGPQQL 430
V A +++++ + AQ Q + M + A+ + G G LGPQ L
Sbjct: 183 VKFADTQKDKEQKRMAQQLQQQ----MQQISAASVWGNLAGLNTLGPQYL 228
Score = 138 (53.6 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
Identities = 40/154 (25%), Positives = 69/154 (44%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKR--SSLGYAYVNYSNPQDAANA 85
+ ++VG + + +E L +LF Q V + V RD+S+ S G +V + + A A
Sbjct: 16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 86 KEALNFMPI-NGKPIRIMYSHRDPSIRKSGYGN-VFIKNLDTSIDNKALCDTFAAFGTVL 143
+ AL+ M + G I D + +FI + + F++FG +
Sbjct: 76 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135
Query: 144 SCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
C++ +G S+G FV F AQ AIK ++
Sbjct: 136 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMH 169
Score = 133 (51.9 bits), Expect = 4.4e-15, Sum P(2) = 4.4e-15
Identities = 26/71 (36%), Positives = 44/71 (61%)
Query: 200 QNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGK-SRCFGFVNFQSPD 258
Q P+ N+++ +L + D+DL ++F FG + SA V D S+CFGFV++ +P
Sbjct: 394 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV 453
Query: 259 AAAAAVEKLNG 269
+A AA++ +NG
Sbjct: 454 SAQAAIQSMNG 464
Score = 125 (49.1 bits), Expect = 8.4e-16, Sum P(2) = 8.4e-16
Identities = 42/189 (22%), Positives = 85/189 (44%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNG---QSKGYGFVQFENEEAAQNAIK 174
+F+ + + K L + F +G V V D + QSKG FV F +AA A
Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 175 MLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTIT 234
L+ M + + + +++N + + +++ +++ T+ D++ +F FG I
Sbjct: 78 ALHNMKVLPGMHHP--IQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRA 294
+++ DG SR FV F + A A++ ++ + G + + AD +
Sbjct: 136 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTME-----GCSSPMVVKFADTQK 190
Query: 295 KFEQERISR 303
EQ+R+++
Sbjct: 191 DKEQKRMAQ 199
Score = 123 (48.4 bits), Expect = 0.00027, P = 0.00027
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQ-SKGYGFVQFENEEAAQNAIKM 175
N+FI +L ++ L F FG V+S KV ID SK +GFV ++N +AQ AI+
Sbjct: 402 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 461
Query: 176 LNGMLINDKQVYVGL 190
+NG I K++ V L
Sbjct: 462 MNGFQIGMKRLKVQL 476
>POMBASE|SPAC1610.03c [details] [associations]
symbol:crp79 "poly(A) binding protein Crp79"
species:4896 "Schizosaccharomyces pombe" [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006406
"mRNA export from nucleus" evidence=IMP] [GO:0008143 "poly(A) RNA
binding" evidence=IDA] [GO:0030437 "ascospore formation"
evidence=IDA] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0061013 "regulation of mRNA catabolic process" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC1610.03c GO:GO:0005634 GO:GO:0005737
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0006406 GO:GO:0030437
eggNOG:COG0724 GO:GO:0008143 GO:GO:0061013 EMBL:AF432874
EMBL:AB054316 RefSeq:NP_001018242.1 ProteinModelPortal:Q9P6M8
STRING:Q9P6M8 EnsemblFungi:SPAC1610.03c.1 GeneID:3361521
KEGG:spo:SPAC1610.03c OrthoDB:EOG486CPJ NextBio:20811563
Uniprot:Q9P6M8
Length = 710
Score = 198 (74.8 bits), Expect = 4.0e-17, Sum P(3) = 4.0e-17
Identities = 45/94 (47%), Positives = 61/94 (64%)
Query: 310 ANLYLKNLDDSINDEK--LKELFSEFGTITSCKVMV-DQHGFSKGSGFAAFSMPEEATRA 366
+NLY+KNLDD++ K L++LFS FG+I S + G SKG GF AF E A RA
Sbjct: 382 SNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRA 441
Query: 367 LNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFA 400
+ +NG M+G+K ++V A+RK +R RLQA FA
Sbjct: 442 KDTLNGMMVGKKRIFVCFAERKSDRIRRLQAFFA 475
Score = 170 (64.9 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 66/201 (32%), Positives = 103/201 (51%)
Query: 37 QNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLG-YAYVNYSNPQDAANAKEALNFMPIN 95
+N N++Q+ ++ + ++ + ++S G + SN Q N A N P N
Sbjct: 303 ENANKTQI-NIENATCSKMTWIMGSPTKEKSQWGSVSTTGVSNQQ---NHPAAWN--PDN 356
Query: 96 GKPIRIMY--SHRD--PSIRKSGY--GNVFIKNLD-TSIDNKA-LCDTFAAFGTVLSCKV 147
KP I++ S R+ PSI S N+++KNLD T I K+ L D F+ FG++LS +
Sbjct: 357 -KPQSIVHWDSLRESSPSIPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSML 415
Query: 148 AIDSN-GQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKF 206
A N G SKGYGFV F EAA A LNGM++ K+++V R+ +R ++ + F
Sbjct: 416 ACYPNSGISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFVCFAERKSDRIRR-LQAFF 474
Query: 207 TNVYVNNLAETVTDEDLKKIF 227
N +E +D K +F
Sbjct: 475 AN---KPTSEQTAQQDNKALF 492
Score = 120 (47.3 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 33/99 (33%), Positives = 56/99 (56%)
Query: 207 TNVYVNNLAETVTD--EDLKKIFGHFGTITSAIVM-KDSDGKSRCFGFVNFQSPDAAAAA 263
+N+YV NL +TV L+ +F FG+I S+++ + G S+ +GFV F+ +AA A
Sbjct: 382 SNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRA 441
Query: 264 VEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERIS 302
+ LNG K +V A+++++R L+A F + S
Sbjct: 442 KDTLNGMMVGKKRIFVCFAERKSDRIRRLQAFFANKPTS 480
Score = 75 (31.5 bits), Expect = 4.0e-17, Sum P(3) = 4.0e-17
Identities = 27/122 (22%), Positives = 58/122 (47%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSC-KVAIDS---NGQSK-------G--YGFVQFE 164
+++ N+D+ + ++ + F+ +G V S + +DS ++K G YGFV+F
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQYGFVKFV 78
Query: 165 NEEAAQNAIKMLNGMLINDKQVYV-GLFVRRQERAQQNVSPKFTNVYVNNLAETV---TD 220
N E+ + +K GM + +++ + V + + P T++ N ++ TD
Sbjct: 79 NAESIEEVLKDAKGMTLGQRKLTIKARVVNPAKLTDKKFKPNDTSITANVFNPSIQNNTD 138
Query: 221 ED 222
E+
Sbjct: 139 EE 140
Score = 61 (26.5 bits), Expect = 4.0e-17, Sum P(3) = 4.0e-17
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 213 NLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLN 268
NL VT DL F G + V + D + +G V S ++ A+EKLN
Sbjct: 209 NLPAEVTPIDLYNHFKQAGVVKGTAVSQFLDQRGFRYGEVIMDSVESCQNAIEKLN 264
Score = 57 (25.1 bits), Expect = 2.7e-15, Sum P(3) = 2.7e-15
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 21 VPSGYGNVS--LYVGDLEQNVNESQLYDLFSQVAQVVSV 57
VP Y + S +YVG+++ +++ ++ FS+ QV S+
Sbjct: 8 VPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESI 46
Score = 56 (24.8 bits), Expect = 8.9e-15, Sum P(3) = 8.9e-15
Identities = 20/62 (32%), Positives = 29/62 (46%)
Query: 120 IKNLDTSIDNKALCDTFAAFGTVLSCKVA--IDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
I NL + L + F G V V+ +D G YG V ++ E+ QNAI+ LN
Sbjct: 207 ILNLPAEVTPIDLYNHFKQAGVVKGTAVSQFLDQRGFR--YGEVIMDSVESCQNAIEKLN 264
Query: 178 GM 179
+
Sbjct: 265 NV 266
Score = 56 (24.8 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
Identities = 26/134 (19%), Positives = 59/134 (44%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIV-MKDS---DGKSRCF---------GFVN 253
+ +YV N+ ++DE++ K F +G + S + DS K++ F GFV
Sbjct: 17 STIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQYGFVK 76
Query: 254 FQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLY 313
F + ++ ++ G T +G+ + + AK ++ + AN++
Sbjct: 77 FVNAESIEEVLKDAKGMT-------LGQRKLTIKARVVNPAKLTDKKFKPNDTSITANVF 129
Query: 314 LKNLDDSINDEKLK 327
++ ++ ++E +K
Sbjct: 130 NPSIQNNTDEENVK 143
>ZFIN|ZDB-GENE-000501-1 [details] [associations]
symbol:celf1 "cugbp, Elav-like family member 1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0045495 "pole plasm"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-000501-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045495
GeneTree:ENSGT00560000076837 EMBL:CR318601 EMBL:BX571680
IPI:IPI00492280 Ensembl:ENSDART00000123170 Uniprot:E7F304
Length = 535
Score = 148 (57.2 bits), Expect = 4.3e-17, Sum P(2) = 4.3e-17
Identities = 33/92 (35%), Positives = 50/92 (54%)
Query: 302 SRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMP 360
S+ E +GANL++ +L D+ L ++F FG + S KV +D Q SK GF ++ P
Sbjct: 442 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNP 501
Query: 361 EEATRALNEMNGKMIGRKPLYVAVAQRKEERK 392
+ A+ MNG IG K L V + + K + K
Sbjct: 502 VSSQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 533
Score = 143 (55.4 bits), Expect = 4.3e-17, Sum P(2) = 4.3e-17
Identities = 40/155 (25%), Positives = 72/155 (46%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKR--SSLGYAYVNYSNPQDAAN 84
++ ++VG + + +E QL +LF V + V RD+S+ S G +V Y + A
Sbjct: 53 SIKMFVGQIPRTWSEDQLRELFEPYGAVYEINVLRDRSQNPPQSKGCCFVTYYTRKSALE 112
Query: 85 AKEALNFMPI-NGKPIRIMYSHRDPSIRKSGYGN-VFIKNLDTSIDNKALCDTFAAFGTV 142
A+ AL+ M I G I D + +F+ + + + F+ +G +
Sbjct: 113 AQNALHNMKILPGMHHPIQMKPADSEKNNAVEDRKLFVGMISKKCNENDIRLMFSPYGQI 172
Query: 143 LSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
C++ +G S+G FV F + AQ+AIK ++
Sbjct: 173 EECRILRGPDGLSRGCAFVTFTARQMAQSAIKSMH 207
Score = 136 (52.9 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 35/125 (28%), Positives = 62/125 (49%)
Query: 149 IDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQE---RAQQNVSPK 205
+ S G S G G +AA + I+ + +Y + +Q Q P+
Sbjct: 391 LGSGGLSNGSGSTMEALTQAAYSGIQQYAAAAL--PSLYSQSLLSQQNVSAAGSQKEGPE 448
Query: 206 FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGK-SRCFGFVNFQSPDAAAAAV 264
N+++ +L + D+DL ++F FG + SA V D S+CFGFV++ +P ++ AA+
Sbjct: 449 GANLFIYHLPQEFGDQDLLQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSSQAAI 508
Query: 265 EKLNG 269
+ +NG
Sbjct: 509 QSMNG 513
Score = 126 (49.4 bits), Expect = 0.00015, P = 0.00015
Identities = 55/229 (24%), Positives = 103/229 (44%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFG--FVNFQSPDAAAAAVE 265
++V + T +++ L+++F +G + V++D S + G FV + + +A A
Sbjct: 56 MFVGQIPRTWSEDQLRELFEPYGAVYEINVLRDRSQNPPQSKGCCFVTYYTRKSALEAQN 115
Query: 266 KLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEK 325
L+ N K+ G + AD E+ + E K L++ + N+
Sbjct: 116 ALH----NMKI-LPGMHHPIQMKPAD------SEKNNAVEDRK---LFVGMISKKCNEND 161
Query: 326 LKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGK--MIG-RKPLYV 382
++ +FS +G I C+++ G S+G F F+ + A A+ M+ M G P+ V
Sbjct: 162 IRLMFSPYGQIEECRILRGPDGLSRGCAFVTFTARQMAQSAIKSMHQSQTMEGCSSPIVV 221
Query: 383 AVAQRKEERKARLQAQFAQIRAPGGMSPL-ASGIPGYHHGAPRLGPQQL 430
A +++++ + AQ Q + M L A+ + G G LGPQ L
Sbjct: 222 KFADTQKDKEQKRIAQQLQQQ----MQQLNAASMWGNLTGLNSLGPQYL 266
Score = 121 (47.7 bits), Expect = 0.00051, P = 0.00051
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQ-SKGYGFVQFENEEAAQNAIKM 175
N+FI +L ++ L F FG V+S KV ID SK +GFV ++N ++Q AI+
Sbjct: 451 NLFIYHLPQEFGDQDLLQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSSQAAIQS 510
Query: 176 LNGMLINDKQVYVGL 190
+NG I K++ V L
Sbjct: 511 MNGFQIGMKRLKVQL 525
>UNIPROTKB|E2R8F6 [details] [associations]
symbol:CELF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0031369 "translation initiation factor binding"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
OMA:PTLYNQS EMBL:AAEX03011483 ProteinModelPortal:E2R8F6
Ensembl:ENSCAFT00000013438 Uniprot:E2R8F6
Length = 513
Score = 152 (58.6 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
Identities = 34/92 (36%), Positives = 50/92 (54%)
Query: 302 SRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMP 360
S+ E +GANL++ +L D+ L ++F FG + S KV +D Q SK GF ++ P
Sbjct: 420 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNP 479
Query: 361 EEATRALNEMNGKMIGRKPLYVAVAQRKEERK 392
A A+ MNG IG K L V + + K + K
Sbjct: 480 VSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 511
Score = 139 (54.0 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 58/230 (25%), Positives = 105/230 (45%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFG--FVNFQSPDAAAAAVE 265
++V + T +++DL+++F +G + V++D S + G FV F + AA A
Sbjct: 45 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 104
Query: 266 KLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEK 325
L+ N KV G + AD E+ + E K L++ + +
Sbjct: 105 ALH----NMKV-LPGMHHPIQMKPAD------SEKNNAVEDRK---LFIGMISKKCTEND 150
Query: 326 LKELFSEFGTITSCKVMVDQHGFSKGSGFAAFS---MPEEATRALNEMNGKMIG-RKPLY 381
++ +FS FG I C+++ G S+G F F+ M + A +A+++ M G P+
Sbjct: 151 IRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQ-TMEGCSSPMV 209
Query: 382 VAVAQRKEERKARLQAQFAQIRAPGGMSPL-ASGIPGYHHGAPRLGPQQL 430
V A +++++ + AQ Q + M + A+ + G G LGPQ L
Sbjct: 210 VKFADTQKDKEQKRMAQQLQQQ----MQQISAASVWGNLAGLNTLGPQYL 255
Score = 138 (53.6 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
Identities = 40/154 (25%), Positives = 69/154 (44%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKR--SSLGYAYVNYSNPQDAANA 85
+ ++VG + + +E L +LF Q V + V RD+S+ S G +V + + A A
Sbjct: 43 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 102
Query: 86 KEALNFMPI-NGKPIRIMYSHRDPSIRKSGYGN-VFIKNLDTSIDNKALCDTFAAFGTVL 143
+ AL+ M + G I D + +FI + + F++FG +
Sbjct: 103 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 162
Query: 144 SCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
C++ +G S+G FV F AQ AIK ++
Sbjct: 163 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMH 196
Score = 135 (52.6 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 49/195 (25%), Positives = 85/195 (43%)
Query: 82 AANAKEALNFMPINGKPIRIMYSH-RDPSIRKSGYGNVF--IKNLDTSIDNKALCDTFAA 138
A N N + + P+ ++ S PS S N + L T A + +
Sbjct: 301 AQNTPSGTNALTTSSSPLSVLTSSGSSPSSSSSSSVNPIASLGALQTLAGATAGLNVSSL 360
Query: 139 FGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQE-- 196
G + + + S+G S G G E A + I+ + +Y + +Q
Sbjct: 361 AG-MAALNGGLGSSGLSNGTGSTM-EALTQAYSGIQQYAAAAL--PTLYNQNLLTQQSIG 416
Query: 197 -RAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGK-SRCFGFVNF 254
Q P+ N+++ +L + D+DL ++F FG + SA V D S+CFGFV++
Sbjct: 417 AAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSY 476
Query: 255 QSPDAAAAAVEKLNG 269
+P +A AA++ +NG
Sbjct: 477 DNPVSAQAAIQSMNG 491
Score = 128 (50.1 bits), Expect = 4.9e-16, Sum P(2) = 4.9e-16
Identities = 49/220 (22%), Positives = 97/220 (44%)
Query: 88 ALNFMPINGKPIRIMYSHRD-PSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCK 146
+LN P++ K + H D P + +F+ + + K L + F +G V
Sbjct: 18 SLNSSPVS-KKMNGTLDHPDQPDLDAI---KMFVGQVPRTWSEKDLRELFEQYGAVYEIN 73
Query: 147 VAIDSNG---QSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVS 203
V D + QSKG FV F +AA A L+ M + + + +++N +
Sbjct: 74 VLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHP--IQMKPADSEKNNA 131
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAA 263
+ +++ +++ T+ D++ +F FG I +++ DG SR FV F + A A
Sbjct: 132 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTA 191
Query: 264 VEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISR 303
++ ++ + G + + AD + EQ+R+++
Sbjct: 192 IKAMHQAQTME-----GCSSPMVVKFADTQKDKEQKRMAQ 226
Score = 123 (48.4 bits), Expect = 0.00029, P = 0.00029
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQ-SKGYGFVQFENEEAAQNAIKM 175
N+FI +L ++ L F FG V+S KV ID SK +GFV ++N +AQ AI+
Sbjct: 429 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 488
Query: 176 LNGMLINDKQVYVGL 190
+NG I K++ V L
Sbjct: 489 MNGFQIGMKRLKVQL 503
>UNIPROTKB|Q92879 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0031369
"translation initiation factor binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376
"mRNA splice site selection" evidence=ISS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0042835 "BRE binding" evidence=IDA] [GO:0016246
"RNA interference" evidence=NAS] [GO:0007281 "germ cell
development" evidence=NAS] [GO:0009790 "embryo development"
evidence=NAS] [GO:0030529 "ribonucleoprotein complex" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0043484 "regulation of RNA
splicing" evidence=IDA] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0003729 "mRNA binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 EMBL:CH471064 GO:GO:0016246
GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0003676 GO:GO:0009790 GO:GO:0030529
GO:GO:0007281 GO:GO:0043484 GO:GO:0000900 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X EMBL:U63289 EMBL:AF248648 EMBL:AF267533
EMBL:AF267534 EMBL:AJ007988 EMBL:AK304430 EMBL:AB210019
EMBL:AC090559 EMBL:BC031079 IPI:IPI00034015 IPI:IPI00218388
IPI:IPI00218389 IPI:IPI00853009 IPI:IPI00956101
RefSeq:NP_001020767.1 RefSeq:NP_001166110.1 RefSeq:NP_001166111.1
RefSeq:NP_006551.1 RefSeq:NP_941989.1 UniGene:Hs.595333 PDB:2CPZ
PDB:2DHS PDB:2RQ4 PDB:2RQC PDB:3NMR PDB:3NNA PDB:3NNC PDB:3NNH
PDBsum:2CPZ PDBsum:2DHS PDBsum:2RQ4 PDBsum:2RQC PDBsum:3NMR
PDBsum:3NNA PDBsum:3NNC PDBsum:3NNH ProteinModelPortal:Q92879
SMR:Q92879 IntAct:Q92879 MINT:MINT-1382906 STRING:Q92879
PhosphoSite:Q92879 DMDM:17374605 PaxDb:Q92879 PRIDE:Q92879
DNASU:10658 Ensembl:ENST00000310513 Ensembl:ENST00000358597
Ensembl:ENST00000361904 Ensembl:ENST00000395290
Ensembl:ENST00000395292 Ensembl:ENST00000532048 GeneID:10658
KEGG:hsa:10658 UCSC:uc001nfk.2 UCSC:uc001nfl.3 UCSC:uc001nfm.3
UCSC:uc001nfn.3 GeneCards:GC11M047602 HGNC:HGNC:2549 HPA:CAB016114
MIM:601074 neXtProt:NX_Q92879 PharmGKB:PA27045 InParanoid:Q92879
PhylomeDB:Q92879 ChiTaRS:CELF1 EvolutionaryTrace:Q92879
GenomeRNAi:10658 NextBio:40521 ArrayExpress:Q92879 Bgee:Q92879
CleanEx:HS_CUGBP1 Genevestigator:Q92879 GermOnline:ENSG00000149187
GO:GO:0042835 GO:GO:0006376 Uniprot:Q92879
Length = 486
Score = 152 (58.6 bits), Expect = 4.6e-17, Sum P(3) = 4.6e-17
Identities = 34/92 (36%), Positives = 50/92 (54%)
Query: 302 SRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMP 360
S+ E +GANL++ +L D+ L ++F FG + S KV +D Q SK GF ++ P
Sbjct: 393 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNP 452
Query: 361 EEATRALNEMNGKMIGRKPLYVAVAQRKEERK 392
A A+ MNG IG K L V + + K + K
Sbjct: 453 VSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 484
Score = 139 (54.0 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 58/230 (25%), Positives = 105/230 (45%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFG--FVNFQSPDAAAAAVE 265
++V + T +++DL+++F +G + V++D S + G FV F + AA A
Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 266 KLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEK 325
L+ N KV G + AD E+ + E K L++ + +
Sbjct: 78 ALH----NMKV-LPGMHHPIQMKPAD------SEKNNAVEDRK---LFIGMISKKCTEND 123
Query: 326 LKELFSEFGTITSCKVMVDQHGFSKGSGFAAFS---MPEEATRALNEMNGKMIG-RKPLY 381
++ +FS FG I C+++ G S+G F F+ M + A +A+++ M G P+
Sbjct: 124 IRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQ-TMEGCSSPMV 182
Query: 382 VAVAQRKEERKARLQAQFAQIRAPGGMSPL-ASGIPGYHHGAPRLGPQQL 430
V A +++++ + AQ Q + M + A+ + G G LGPQ L
Sbjct: 183 VKFADTQKDKEQKRMAQQLQQQ----MQQISAASVWGNLAGLNTLGPQYL 228
Score = 138 (53.6 bits), Expect = 4.6e-17, Sum P(3) = 4.6e-17
Identities = 40/154 (25%), Positives = 69/154 (44%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKR--SSLGYAYVNYSNPQDAANA 85
+ ++VG + + +E L +LF Q V + V RD+S+ S G +V + + A A
Sbjct: 16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 86 KEALNFMPI-NGKPIRIMYSHRDPSIRKSGYGN-VFIKNLDTSIDNKALCDTFAAFGTVL 143
+ AL+ M + G I D + +FI + + F++FG +
Sbjct: 76 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135
Query: 144 SCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
C++ +G S+G FV F AQ AIK ++
Sbjct: 136 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMH 169
Score = 134 (52.2 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 49/195 (25%), Positives = 85/195 (43%)
Query: 82 AANAKEALNFMPINGKPIRIMYSH-RDPSIRKSGYGNVF--IKNLDTSIDNKALCDTFAA 138
A N N + + P+ ++ S PS S N + L T A + +
Sbjct: 274 AQNTPSGTNALTTSSSPLSVLTSSGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSL 333
Query: 139 FGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQE-- 196
G + + + S+G S G G E A + I+ + +Y + +Q
Sbjct: 334 AG-MAALNGGLGSSGLSNGTGSTM-EALTQAYSGIQQYAAAAL--PTLYNQNLLTQQSIG 389
Query: 197 -RAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGK-SRCFGFVNF 254
Q P+ N+++ +L + D+DL ++F FG + SA V D S+CFGFV++
Sbjct: 390 AAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSY 449
Query: 255 QSPDAAAAAVEKLNG 269
+P +A AA++ +NG
Sbjct: 450 DNPVSAQAAIQSMNG 464
Score = 125 (49.1 bits), Expect = 8.4e-16, Sum P(2) = 8.4e-16
Identities = 42/189 (22%), Positives = 85/189 (44%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNG---QSKGYGFVQFENEEAAQNAIK 174
+F+ + + K L + F +G V V D + QSKG FV F +AA A
Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 175 MLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTIT 234
L+ M + + + +++N + + +++ +++ T+ D++ +F FG I
Sbjct: 78 ALHNMKVLPGMHHP--IQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRA 294
+++ DG SR FV F + A A++ ++ + G + + AD +
Sbjct: 136 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTME-----GCSSPMVVKFADTQK 190
Query: 295 KFEQERISR 303
EQ+R+++
Sbjct: 191 DKEQKRMAQ 199
Score = 123 (48.4 bits), Expect = 0.00027, P = 0.00027
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQ-SKGYGFVQFENEEAAQNAIKM 175
N+FI +L ++ L F FG V+S KV ID SK +GFV ++N +AQ AI+
Sbjct: 402 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 461
Query: 176 LNGMLINDKQVYVGL 190
+NG I K++ V L
Sbjct: 462 MNGFQIGMKRLKVQL 476
Score = 40 (19.1 bits), Expect = 4.6e-17, Sum P(3) = 4.6e-17
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 232 TITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTT 271
T +S + + S G S N +P A+ A++ L G T
Sbjct: 286 TSSSPLSVLTSSGSSPSSSSSNSVNPIASLGALQTLAGAT 325
>TAIR|locus:2139340 [details] [associations]
symbol:RBP-DR1 "RNA-binding protein-defense related 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0009626 "plant-type
hypersensitive response" evidence=IMP] [GO:0080151 "positive
regulation of salicylic acid mediated signaling pathway"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 GO:GO:0009626
KO:K13207 eggNOG:NOG251494 OMA:SAMESIN HSSP:Q60900 GO:GO:0080151
EMBL:AY084669 EMBL:AK316961 IPI:IPI00541126 RefSeq:NP_567249.1
UniGene:At.28541 ProteinModelPortal:Q8LFS6 SMR:Q8LFS6 STRING:Q8LFS6
PaxDb:Q8LFS6 PRIDE:Q8LFS6 EnsemblPlants:AT4G03110.1 GeneID:828090
KEGG:ath:AT4G03110 TAIR:At4g03110 InParanoid:Q8LFS6
PhylomeDB:Q8LFS6 ProtClustDB:CLSN2689309 Genevestigator:Q8LFS6
Uniprot:Q8LFS6
Length = 441
Score = 154 (59.3 bits), Expect = 5.3e-17, Sum P(2) = 5.3e-17
Identities = 37/153 (24%), Positives = 79/153 (51%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+V L+VG + ++++ESQL LF + A V V + +D+ R+S G ++ + ++A
Sbjct: 17 SVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLV 76
Query: 87 EAL-NFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSC 145
A N + G + + D + + + +F+ L ++ + F+ +GT+
Sbjct: 77 NACHNKKTLPGANSLLQVKYADGELERLEH-KLFVGMLPKNVSEAEVQSLFSKYGTIKDL 135
Query: 146 KVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNG 178
++ + SKG F+++E +E A +A++ +NG
Sbjct: 136 QILRGAQQTSKGCAFLKYETKEQAVSAMESING 168
Score = 152 (58.6 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 35/89 (39%), Positives = 53/89 (59%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKM 175
N+FI N+ ++ L F +FG VLS KV +D + G SK +GFV ++++ AAQNAI M
Sbjct: 350 NLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDM 409
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSP 204
+NG + K++ V L R Q + +P
Sbjct: 410 MNGRHLGGKKLKVQL-KRDSNNGQPSSNP 437
Score = 151 (58.2 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 64/259 (24%), Positives = 111/259 (42%)
Query: 194 RQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGK-SRCFGFV 252
++E ++N + ++V + + +++ L +F F + ++KD + SR F+
Sbjct: 5 KEENREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFL 64
Query: 253 NFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANL 312
S + A +KL +N K + A L+ K+ + R E L
Sbjct: 65 LCPSREEA----DKLVNACHNKKT--LPGANSL------LQVKYADGELERLEH----KL 108
Query: 313 YLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG 372
++ L ++++ +++ LFS++GTI +++ SKG F + E+A A+ +NG
Sbjct: 109 FVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESING 168
Query: 373 K--MIGRK-PLYVAVAQRKEERKAR-LQAQFAQIRAPGGMSPLASGIPGYHHGAPRLGPQ 428
K M G PL V A + ER R LQ + I G P + GA +G
Sbjct: 169 KHKMEGSTVPLVVKWADTERERHTRRLQKAQSHIARLGNGDPTNPSL----FGALPMGYV 224
Query: 429 QLYYGQGTPGLMPPQAAGY 447
Y G G PP GY
Sbjct: 225 PPYNGYGYH--QPPGTYGY 241
Score = 133 (51.9 bits), Expect = 5.3e-17, Sum P(2) = 5.3e-17
Identities = 29/76 (38%), Positives = 43/76 (56%)
Query: 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRA 366
+GANL++ N+ D++L F FG + S KV VD+ G SK GF ++ A A
Sbjct: 347 EGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNA 406
Query: 367 LNEMNGKMIGRKPLYV 382
++ MNG+ +G K L V
Sbjct: 407 IDMMNGRHLGGKKLKV 422
Score = 126 (49.4 bits), Expect = 2.8e-16, Sum P(2) = 2.8e-16
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 200 QNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPD 258
Q P+ N+++ N+ D++L F FG + SA V D + G S+CFGFV++ S
Sbjct: 342 QTEGPEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQA 401
Query: 259 AAAAAVEKLNG 269
AA A++ +NG
Sbjct: 402 AAQNAIDMMNG 412
>MGI|MGI:1342295 [details] [associations]
symbol:Celf1 "CUGBP, Elav-like family member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IMP]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IMP]
[GO:0042835 "BRE binding" evidence=ISO] [GO:0043484 "regulation of
RNA splicing" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1342295
GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
EMBL:AL672241 HOVERGEN:HBG107646 KO:K13207 CTD:10658
eggNOG:NOG251494 ChiTaRS:CELF1 GO:GO:0042835 GO:GO:0006376
EMBL:AJ007987 EMBL:AF267535 EMBL:AK135030 EMBL:AK143698
EMBL:AK014492 EMBL:AK156725 EMBL:BC021393 EMBL:AF314172
EMBL:AB050499 EMBL:X61451 IPI:IPI00123205 IPI:IPI00229237
IPI:IPI00229238 IPI:IPI00395213 PIR:S16865 RefSeq:NP_001231820.1
RefSeq:NP_001231832.1 RefSeq:NP_059064.2 RefSeq:NP_941955.1
UniGene:Mm.29495 UniGene:Mm.490161 ProteinModelPortal:P28659
SMR:P28659 STRING:P28659 PhosphoSite:P28659 PaxDb:P28659
PRIDE:P28659 Ensembl:ENSMUST00000005643 Ensembl:ENSMUST00000068726
Ensembl:ENSMUST00000068747 Ensembl:ENSMUST00000111448
Ensembl:ENSMUST00000111449 Ensembl:ENSMUST00000111451
Ensembl:ENSMUST00000111452 Ensembl:ENSMUST00000111455
Ensembl:ENSMUST00000177642 GeneID:13046 KEGG:mmu:13046
UCSC:uc008ktx.1 GeneTree:ENSGT00560000076837 InParanoid:P28659
OMA:PTLYNQS NextBio:282946 Bgee:P28659 CleanEx:MM_CUGBP1
Genevestigator:P28659 GermOnline:ENSMUSG00000005506 GO:GO:0031369
Uniprot:P28659
Length = 486
Score = 152 (58.6 bits), Expect = 5.8e-17, Sum P(3) = 5.8e-17
Identities = 34/92 (36%), Positives = 50/92 (54%)
Query: 302 SRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMP 360
S+ E +GANL++ +L D+ L ++F FG + S KV +D Q SK GF ++ P
Sbjct: 393 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNP 452
Query: 361 EEATRALNEMNGKMIGRKPLYVAVAQRKEERK 392
A A+ MNG IG K L V + + K + K
Sbjct: 453 VSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 484
Score = 138 (53.6 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 57/230 (24%), Positives = 105/230 (45%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFG--FVNFQSPDAAAAAVE 265
++V + T +++DL+++F +G + +++D S + G FV F + AA A
Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 266 KLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEK 325
L+ N KV G + AD E+ + E K L++ + +
Sbjct: 78 ALH----NMKV-LPGMHHPIQMKPAD------SEKNNAVEDRK---LFIGMISKKCTEND 123
Query: 326 LKELFSEFGTITSCKVMVDQHGFSKGSGFAAFS---MPEEATRALNEMNGKMIG-RKPLY 381
++ +FS FG I C+++ G S+G F F+ M + A +A+++ M G P+
Sbjct: 124 IRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQ-TMEGCSSPMV 182
Query: 382 VAVAQRKEERKARLQAQFAQIRAPGGMSPL-ASGIPGYHHGAPRLGPQQL 430
V A +++++ + AQ Q + M + A+ + G G LGPQ L
Sbjct: 183 VKFADTQKDKEQKRMAQQLQQQ----MQQISAASVWGNLAGLNTLGPQYL 228
Score = 137 (53.3 bits), Expect = 5.8e-17, Sum P(3) = 5.8e-17
Identities = 39/154 (25%), Positives = 69/154 (44%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKR--SSLGYAYVNYSNPQDAANA 85
+ ++VG + + +E L +LF Q V + + RD+S+ S G +V + + A A
Sbjct: 16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 86 KEALNFMPI-NGKPIRIMYSHRDPSIRKSGYGN-VFIKNLDTSIDNKALCDTFAAFGTVL 143
+ AL+ M + G I D + +FI + + F++FG +
Sbjct: 76 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135
Query: 144 SCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
C++ +G S+G FV F AQ AIK ++
Sbjct: 136 ECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMH 169
Score = 134 (52.2 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 49/195 (25%), Positives = 85/195 (43%)
Query: 82 AANAKEALNFMPINGKPIRIMYSH-RDPSIRKSGYGNVF--IKNLDTSIDNKALCDTFAA 138
A N N + + P+ ++ S PS S N + L T A + +
Sbjct: 274 AQNTPSGTNALTTSSSPLSVLTSSGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSL 333
Query: 139 FGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQE-- 196
G + + + S+G S G G E A + I+ + +Y + +Q
Sbjct: 334 AG-MAALNGGLGSSGLSNGTGSTM-EALTQAYSGIQQYAAAAL--PTLYNQNLLTQQSIG 389
Query: 197 -RAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGK-SRCFGFVNF 254
Q P+ N+++ +L + D+DL ++F FG + SA V D S+CFGFV++
Sbjct: 390 AAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSY 449
Query: 255 QSPDAAAAAVEKLNG 269
+P +A AA++ +NG
Sbjct: 450 DNPVSAQAAIQSMNG 464
Score = 125 (49.1 bits), Expect = 8.4e-16, Sum P(2) = 8.4e-16
Identities = 41/189 (21%), Positives = 85/189 (44%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNG---QSKGYGFVQFENEEAAQNAIK 174
+F+ + + K L + F +G V + D + QSKG FV F +AA A
Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 175 MLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTIT 234
L+ M + + + +++N + + +++ +++ T+ D++ +F FG I
Sbjct: 78 ALHNMKVLPGMHHP--IQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRA 294
+++ DG SR FV F + A A++ ++ + G + + AD +
Sbjct: 136 ECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTME-----GCSSPMVVKFADTQK 190
Query: 295 KFEQERISR 303
EQ+R+++
Sbjct: 191 DKEQKRMAQ 199
Score = 123 (48.4 bits), Expect = 0.00027, P = 0.00027
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQ-SKGYGFVQFENEEAAQNAIKM 175
N+FI +L ++ L F FG V+S KV ID SK +GFV ++N +AQ AI+
Sbjct: 402 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 461
Query: 176 LNGMLINDKQVYVGL 190
+NG I K++ V L
Sbjct: 462 MNGFQIGMKRLKVQL 476
Score = 40 (19.1 bits), Expect = 5.8e-17, Sum P(3) = 5.8e-17
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 232 TITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTT 271
T +S + + S G S N +P A+ A++ L G T
Sbjct: 286 TSSSPLSVLTSSGSSPSSSSSNSVNPIASLGALQTLAGAT 325
>UNIPROTKB|Q8N6W0 [details] [associations]
symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471139 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 OrthoDB:EOG4RJG30 EMBL:AB209067
EMBL:AC005331 EMBL:AC006505 EMBL:AC010649 EMBL:AC123911
EMBL:BC028101 EMBL:AF329266 EMBL:AF248649 IPI:IPI00171157
IPI:IPI00853054 RefSeq:NP_001166144.1 RefSeq:NP_068757.2
UniGene:Hs.655747 PDB:2DNH PDBsum:2DNH ProteinModelPortal:Q8N6W0
SMR:Q8N6W0 STRING:Q8N6W0 PhosphoSite:Q8N6W0 DMDM:74762534
PRIDE:Q8N6W0 DNASU:60680 Ensembl:ENST00000292672
Ensembl:ENST00000541430 GeneID:60680 KEGG:hsa:60680 UCSC:uc002lxl.2
UCSC:uc010dtj.2 CTD:60680 GeneCards:GC19P003224 HGNC:HGNC:14058
HPA:HPA042012 MIM:612680 neXtProt:NX_Q8N6W0 PharmGKB:PA25429
InParanoid:Q8N6W0 OMA:DGMKDLD PhylomeDB:Q8N6W0
EvolutionaryTrace:Q8N6W0 GenomeRNAi:60680 NextBio:65500
ArrayExpress:Q8N6W0 Bgee:Q8N6W0 CleanEx:HS_BRUNOL5
Genevestigator:Q8N6W0 Uniprot:Q8N6W0
Length = 485
Score = 153 (58.9 bits), Expect = 5.9e-17, Sum P(2) = 5.9e-17
Identities = 42/154 (27%), Positives = 72/154 (46%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKE 87
+ L+VG + ++++E L LF Q ++ + V +D G A++ Y A A+
Sbjct: 45 IKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQT 104
Query: 88 ALN---FMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS 144
AL+ +P +PI++ + D R +F+ L+ + + F FG +
Sbjct: 105 ALHEQKTLPGMARPIQVKPA--DSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDE 162
Query: 145 CKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNG 178
C V +G SKG FV+F + AQ AI L+G
Sbjct: 163 CTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHG 196
Score = 142 (55.0 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 53/199 (26%), Positives = 89/199 (44%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVEKL 267
++V + + ++DLK +F FG I V+KD G + F+ + + D+A A L
Sbjct: 47 LFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTAL 106
Query: 268 NGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLK 327
+ ++ G A+ + AD ++ ++R L++ L+ ++E +
Sbjct: 107 H-----EQKTLPGMARPIQVKPADSESRGGRDR----------KLFVGMLNKQQSEEDVL 151
Query: 328 ELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGK--MIGRKP-LYVAV 384
LF FG I C V+ G SKG F FS EA A++ ++G M G L V
Sbjct: 152 RLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKF 211
Query: 385 AQRKEERKAR-LQAQFAQI 402
A +ER R +Q Q+
Sbjct: 212 ADTDKERTLRRMQQMVGQL 230
Score = 135 (52.6 bits), Expect = 5.9e-17, Sum P(2) = 5.9e-17
Identities = 27/72 (37%), Positives = 46/72 (63%)
Query: 199 QQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSP 257
QQ P+ N+++ +L + D +L ++F FG I S+ V D + +S+CFGFV+F +P
Sbjct: 392 QQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNP 451
Query: 258 DAAAAAVEKLNG 269
+A AA++ +NG
Sbjct: 452 ASAQAAIQAMNG 463
Score = 132 (51.5 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 31/83 (37%), Positives = 45/83 (54%)
Query: 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRA 366
+G NL++ +L D +L ++F FG I S KV +D+ SK GF +F P A A
Sbjct: 398 EGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAA 457
Query: 367 LNEMNGKMIGRKPLYVAVAQRKE 389
+ MNG IG K L V + + K+
Sbjct: 458 IQAMNGFQIGMKRLKVQLKRPKD 480
Score = 130 (50.8 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKM 175
N+FI +L + L F FG ++S KV +D + QSK +GFV F+N +AQ AI+
Sbjct: 401 NLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQA 460
Query: 176 LNGMLINDKQVYVGL 190
+NG I K++ V L
Sbjct: 461 MNGFQIGMKRLKVQL 475
Score = 129 (50.5 bits), Expect = 5.3e-14, Sum P(2) = 5.3e-14
Identities = 41/156 (26%), Positives = 72/156 (46%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKML 176
+F+ + +D K L F FG + V D G KG F+ + A +AIK
Sbjct: 47 LFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYC---ARDSAIKAQ 103
Query: 177 NGMLINDKQVYVGLFVRRQERAQQNVSP--KFTNVYVNNLAETVTDEDLKKIFGHFGTIT 234
+ ++++ G+ Q + + S + ++V L + ++ED+ ++F FG I
Sbjct: 104 TAL--HEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVID 161
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGT 270
V++ DG S+ FV F S A AA+ L+G+
Sbjct: 162 ECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGS 197
>UNIPROTKB|F1ND14 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0043484 IPI:IPI00854332 GO:GO:0042835
GO:GO:0006376 GeneTree:ENSGT00560000076837 OMA:PTLYNQS
EMBL:AADN02033464 Ensembl:ENSGALT00000013143
Ensembl:ENSGALT00000038511 Uniprot:F1ND14
Length = 485
Score = 152 (58.6 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 34/92 (36%), Positives = 50/92 (54%)
Query: 302 SRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMP 360
S+ E +GANL++ +L D+ L ++F FG + S KV +D Q SK GF ++ P
Sbjct: 392 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNP 451
Query: 361 EEATRALNEMNGKMIGRKPLYVAVAQRKEERK 392
A A+ MNG IG K L V + + K + K
Sbjct: 452 VSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 483
Score = 136 (52.9 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 41/154 (26%), Positives = 69/154 (44%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKR--SSLGYAYVNYSNPQDAANA 85
+ ++VG + ++ E L +LF Q V + V RD+S+ S G +V + + A A
Sbjct: 16 IKMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 86 KEALNFMPI-NGKPIRIMYSHRDPSIRKSGYGN-VFIKNLDTSIDNKALCDTFAAFGTVL 143
+ AL+ M I G I D + +FI + + + F+ FG +
Sbjct: 76 QNALHNMKILPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCNENDIRVMFSPFGQIE 135
Query: 144 SCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
C++ +G S+G FV F AQ AIK ++
Sbjct: 136 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMH 169
Score = 136 (52.9 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 64/240 (26%), Positives = 106/240 (44%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFG--FVNFQSPDAAAAAVE 265
++V + + ++DL+++F +G + V++D S + G FV F + AA A
Sbjct: 18 MFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 266 KLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEK 325
L+ N K+ G + AD E+ + E K L++ + N+
Sbjct: 78 ALH----NMKI-LPGMHHPIQMKPAD------SEKNNAVEDRK---LFIGMISKKCNEND 123
Query: 326 LKELFSEFGTITSCKVMVDQHGFSKGSGFAAFS---MPEEATRALNEMNGKMIG-RKPLY 381
++ +FS FG I C+++ G S+G F F+ M + A +A+++ M G P+
Sbjct: 124 IRVMFSPFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQ-TMEGCSSPIV 182
Query: 382 VAVA--QRKEERKA---RLQAQFAQIRAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQGT 436
V A Q+ +E+K +LQ Q QI A LA G LGPQ L Q T
Sbjct: 183 VKFADTQKDKEQKRIAQQLQQQMQQISAASVWGNLA--------GLNTLGPQYLALLQQT 234
Score = 133 (51.9 bits), Expect = 7.3e-15, Sum P(2) = 7.3e-15
Identities = 26/71 (36%), Positives = 44/71 (61%)
Query: 200 QNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGK-SRCFGFVNFQSPD 258
Q P+ N+++ +L + D+DL ++F FG + SA V D S+CFGFV++ +P
Sbjct: 393 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV 452
Query: 259 AAAAAVEKLNG 269
+A AA++ +NG
Sbjct: 453 SAQAAIQSMNG 463
Score = 123 (48.4 bits), Expect = 0.00027, P = 0.00027
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQ-SKGYGFVQFENEEAAQNAIKM 175
N+FI +L ++ L F FG V+S KV ID SK +GFV ++N +AQ AI+
Sbjct: 401 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 460
Query: 176 LNGMLINDKQVYVGL 190
+NG I K++ V L
Sbjct: 461 MNGFQIGMKRLKVQL 475
Score = 121 (47.7 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 44/189 (23%), Positives = 84/189 (44%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNG---QSKGYGFVQFENEEAAQNAIK 174
+F+ + S K L + F +G V V D + QSKG FV F +AA A
Sbjct: 18 MFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 175 MLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTIT 234
L+ M I + + +++N + + +++ +++ + D++ +F FG I
Sbjct: 78 ALHNMKILPGMHHP--IQMKPADSEKNNAVEDRKLFIGMISKKCNENDIRVMFSPFGQIE 135
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRA 294
+++ DG SR FV F + A A++ ++ + G + + AD +
Sbjct: 136 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTME-----GCSSPIVVKFADTQK 190
Query: 295 KFEQERISR 303
EQ+RI++
Sbjct: 191 DKEQKRIAQ 199
>UNIPROTKB|Q5F3T7 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
EMBL:AJ851563 EMBL:AB050497 IPI:IPI00581213 IPI:IPI00854332
RefSeq:NP_001012539.1 UniGene:Gga.14943 UniGene:Gga.56092
ProteinModelPortal:Q5F3T7 SMR:Q5F3T7 STRING:Q5F3T7 PRIDE:Q5F3T7
GeneID:373923 KEGG:gga:373923 CTD:10658 eggNOG:NOG251494
HOGENOM:HOG000004754 InParanoid:Q5F3T7 OrthoDB:EOG4N8R4X
NextBio:20813455 Uniprot:Q5F3T7
Length = 489
Score = 152 (58.6 bits), Expect = 6.1e-17, Sum P(2) = 6.1e-17
Identities = 34/92 (36%), Positives = 50/92 (54%)
Query: 302 SRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMP 360
S+ E +GANL++ +L D+ L ++F FG + S KV +D Q SK GF ++ P
Sbjct: 396 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNP 455
Query: 361 EEATRALNEMNGKMIGRKPLYVAVAQRKEERK 392
A A+ MNG IG K L V + + K + K
Sbjct: 456 VSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 487
Score = 138 (53.6 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 72/269 (26%), Positives = 115/269 (42%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFG--FVNFQSPDAAAAAVE 265
++V + + ++DL+++F +G + V++D S + G FV F + AA A
Sbjct: 18 MFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 266 KLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEK 325
L+ N K+ G + AD E+ + E K L++ + N+
Sbjct: 78 ALH----NMKI-LPGMHHPIQMKPAD------SEKNNAVEDRK---LFIGMISKKCNEND 123
Query: 326 LKELFSEFGTITSCKVMVDQHGFSKGSGFAAFS---MPEEATRALNEMNGKMIG-RKPLY 381
++ +FS FG I C+++ G S+G F F+ M + A +A+++ M G P+
Sbjct: 124 IRVMFSPFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQ-TMEGCSSPIV 182
Query: 382 VAVA--QRKEERKA---RLQAQFAQIRAPGGMSPLASGIPGYHHGAPRLGPQQL-YYGQG 435
V A Q+ +E+K +LQ Q QI A LA G LGPQ L Y Q
Sbjct: 183 VKFADTQKDKEQKRIAQQLQQQMQQISAASVWGNLA--------GLNTLGPQYLALYLQ- 233
Query: 436 TPGLMPPQAAGYGFQQQVFPGLRP-GGPN 463
L+ AA L P GG N
Sbjct: 234 ---LLQQTAAASSGNLNTLSSLHPMGGLN 259
Score = 136 (52.9 bits), Expect = 6.1e-17, Sum P(2) = 6.1e-17
Identities = 41/154 (26%), Positives = 69/154 (44%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKR--SSLGYAYVNYSNPQDAANA 85
+ ++VG + ++ E L +LF Q V + V RD+S+ S G +V + + A A
Sbjct: 16 IKMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 86 KEALNFMPI-NGKPIRIMYSHRDPSIRKSGYGN-VFIKNLDTSIDNKALCDTFAAFGTVL 143
+ AL+ M I G I D + +FI + + + F+ FG +
Sbjct: 76 QNALHNMKILPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCNENDIRVMFSPFGQIE 135
Query: 144 SCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
C++ +G S+G FV F AQ AIK ++
Sbjct: 136 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMH 169
Score = 133 (51.9 bits), Expect = 7.5e-15, Sum P(2) = 7.5e-15
Identities = 26/71 (36%), Positives = 44/71 (61%)
Query: 200 QNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGK-SRCFGFVNFQSPD 258
Q P+ N+++ +L + D+DL ++F FG + SA V D S+CFGFV++ +P
Sbjct: 397 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV 456
Query: 259 AAAAAVEKLNG 269
+A AA++ +NG
Sbjct: 457 SAQAAIQSMNG 467
Score = 123 (48.4 bits), Expect = 0.00027, P = 0.00027
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQ-SKGYGFVQFENEEAAQNAIKM 175
N+FI +L ++ L F FG V+S KV ID SK +GFV ++N +AQ AI+
Sbjct: 405 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 464
Query: 176 LNGMLINDKQVYVGL 190
+NG I K++ V L
Sbjct: 465 MNGFQIGMKRLKVQL 479
Score = 121 (47.7 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 44/189 (23%), Positives = 84/189 (44%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNG---QSKGYGFVQFENEEAAQNAIK 174
+F+ + S K L + F +G V V D + QSKG FV F +AA A
Sbjct: 18 MFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 175 MLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTIT 234
L+ M I + + +++N + + +++ +++ + D++ +F FG I
Sbjct: 78 ALHNMKILPGMHHP--IQMKPADSEKNNAVEDRKLFIGMISKKCNENDIRVMFSPFGQIE 135
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRA 294
+++ DG SR FV F + A A++ ++ + G + + AD +
Sbjct: 136 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTME-----GCSSPIVVKFADTQK 190
Query: 295 KFEQERISR 303
EQ+RI++
Sbjct: 191 DKEQKRIAQ 199
Score = 37 (18.1 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 456 GLRPGGPNYIMPYHLQRQVHPGQRTGVRRSGNTHQM 491
GL GP Y+ Y LQ Q+T SGN + +
Sbjct: 219 GLNTLGPQYLALY-LQLL----QQTAAASSGNLNTL 249
>ASPGD|ASPL0000035772 [details] [associations]
symbol:rrmA species:162425 "Emericella nidulans"
[GO:0006527 "arginine catabolic process" evidence=IMP] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 eggNOG:COG0724 OrthoDB:EOG44BFB8 EMBL:AACD01000169
HOGENOM:HOG000186228 OMA:PQAHYGQ RefSeq:XP_682359.1
ProteinModelPortal:Q5ARJ0 STRING:Q5ARJ0
EnsemblFungi:CADANIAT00009524 GeneID:2868083 KEGG:ani:AN9090.2
Uniprot:Q5ARJ0
Length = 393
Score = 184 (69.8 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 64/233 (27%), Positives = 109/233 (46%)
Query: 198 AQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRC-FGFVNFQ 255
AQQ K T +++ L + + ++ ++ G + +++D G+S + FV+F
Sbjct: 57 AQQGNEGK-TTLWMGELEPWIDENFVRNLWFQMGEQVNVKMIRDKFSGRSNAGYCFVDFA 115
Query: 256 SPDAAAAAVEKLNGTT--NNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLY 313
SP AAA A+ LNGT N ++++ + A L + +R Y +++
Sbjct: 116 SPAAAAKALS-LNGTPMPNTNRLFKLNWATG-----GGLADRSRDDRGPEY------SIF 163
Query: 314 LKNLDDSINDEKLKELF-SEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMN 371
+ +L +N+ L LF S F + S K+M D G S+G GF FS + RAL+EM
Sbjct: 164 VGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALSEMQ 223
Query: 372 GKMIGRKPLYVAVAQRKEERKARLQAQFAQIRAPGGMSPLASGIPGYHHGAPR 424
G G +P+ ++ A K + + + P GM P P +GAP+
Sbjct: 224 GVYCGNRPMRISTATPKNKGPGVVPGGMG-MPGPAGMYPPMGAPPMGFYGAPQ 275
Score = 181 (68.8 bits), Expect = 7.4e-17, Sum P(2) = 7.4e-17
Identities = 49/174 (28%), Positives = 97/174 (55%)
Query: 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQ-SKRSSLGYAYVNYSNPQDAAN 84
G +L++G+LE ++E+ + +L+ Q+ + V+V++ RD+ S RS+ GY +V++++P AA
Sbjct: 63 GKTTLWMGELEPWIDENFVRNLWFQMGEQVNVKMIRDKFSGRSNAGYCFVDFASPAAAAK 122
Query: 85 AKEALNF--MPINGKPIRIMYS------HRDPSIRKSGYGNVFIKNLDTSIDNKALCDTF 136
A +LN MP + ++ ++ R R Y ++F+ +L ++ L F
Sbjct: 123 AL-SLNGTPMPNTNRLFKLNWATGGGLADRSRDDRGPEY-SIFVGDLGPEVNEYVLVSLF 180
Query: 137 AA-FGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYV 188
+ F + S K+ D +G S+GYGFV+F +E Q A+ + G+ ++ + +
Sbjct: 181 QSRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALSEMQGVYCGNRPMRI 234
Score = 100 (40.3 bits), Expect = 7.4e-17, Sum P(2) = 7.4e-17
Identities = 32/91 (35%), Positives = 45/91 (49%)
Query: 200 QNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDA 259
Q P T V+V L+ VT+++L+ F FG IT +K GK C GFV F A
Sbjct: 279 QFTDPNNTTVFVGGLSGYVTEDELRSFFQGFGEIT---YVKIPPGKG-C-GFVQFVQRHA 333
Query: 260 AAAAVEKLNG-TTNNDKV---WYVGRAQKRA 286
A A+ ++ G N +V W GR+Q +
Sbjct: 334 AEMAINQMQGYPIGNSRVRLSW--GRSQNNS 362
Score = 82 (33.9 bits), Expect = 5.5e-15, Sum P(2) = 5.5e-15
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 301 ISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMP 360
++++ +++ L + +++L+ F FG IT K+ KG GF F
Sbjct: 277 MNQFTDPNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPP-----GKGCGFVQFVQR 331
Query: 361 EEATRALNEMNGKMIG 376
A A+N+M G IG
Sbjct: 332 HAAEMAINQMQGYPIG 347
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 232 (86.7 bits), Expect = 8.1e-17, P = 8.1e-17
Identities = 68/220 (30%), Positives = 109/220 (49%)
Query: 71 YAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRK--SGYGNVFIKNLDTSID 128
Y +V + +DAA A A+N I GK +++ ++ S +K S + +VF+ +L I
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 126
Query: 129 NKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVY 187
+ + FA FG + +V D + G+SKGYGFV F N+ A+NAI + G + +Q+
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 188 VGLFVRR-------QE------RAQQNV---SPKFTNVYVNNLAETVTDEDLKKIFGHFG 231
R+ QE R + V SPK VY +A +TD+ +++ F FG
Sbjct: 187 TNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFG 246
Query: 232 TITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTT 271
I V + + FV F + ++AA A+ +NGTT
Sbjct: 247 QIMEIRVFPEKG-----YSFVRFSTHESAAHAIVSVNGTT 281
Score = 209 (78.6 bits), Expect = 3.9e-14, P = 3.9e-14
Identities = 64/225 (28%), Positives = 104/225 (46%)
Query: 158 YGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAET 217
Y FV+F A A+ +NG I K+V V + +++ S F +V+V +L+
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVN-WATTPSSQKKDTSNHF-HVFVGDLSPE 124
Query: 218 VTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKV 276
+T ED+K F FG I+ A V+KD + GKS+ +GFV+F + A A+ + G +
Sbjct: 125 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184
Query: 277 ----WYVGR--AQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELF 330
W + A K + + +FE + K +Y + + D+ +++ F
Sbjct: 185 IRTNWATRKPPAPKSTQETNTKQLRFED--VVNQSSPKNCTVYCGGIASGLTDQLMRQTF 242
Query: 331 SEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMI 375
S FG I +V + KG F FS E A A+ +NG I
Sbjct: 243 SPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 131 (51.2 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 45/167 (26%), Positives = 71/167 (42%)
Query: 30 LYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL 89
++VGDL + + F+ ++ RV +D + S GY +V++ N DA NA +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 90 NFMPINGKPIRIMYSHRDPSIRKSGYG-NV----F--IKNLDTSIDNKALCDTFAAFGTV 142
+ G+ IR ++ R P KS N F + N + + C A+ T
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
Query: 143 LSCKVAIDSNGQ--------SKGYGFVQFENEEAAQNAIKMLNGMLI 181
+ GQ KGY FV+F E+A +AI +NG I
Sbjct: 236 QLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTI 282
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 232 (86.7 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 68/220 (30%), Positives = 109/220 (49%)
Query: 71 YAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRK--SGYGNVFIKNLDTSID 128
Y +V + +DAA A A+N I GK +++ ++ S +K S + +VF+ +L I
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 126
Query: 129 NKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVY 187
+ + FA FG + +V D + G+SKGYGFV F N+ A+NAI + G + +Q+
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 188 VGLFVRR-------QE------RAQQNV---SPKFTNVYVNNLAETVTDEDLKKIFGHFG 231
R+ QE R + V SPK VY +A +TD+ +++ F FG
Sbjct: 187 TNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFG 246
Query: 232 TITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTT 271
I V + + FV F + ++AA A+ +NGTT
Sbjct: 247 QIMEIRVFPEKG-----YSFVRFSTHESAAHAIVSVNGTT 281
Score = 209 (78.6 bits), Expect = 4.1e-14, P = 4.1e-14
Identities = 64/225 (28%), Positives = 104/225 (46%)
Query: 158 YGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAET 217
Y FV+F A A+ +NG I K+V V + +++ S F +V+V +L+
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVN-WATTPSSQKKDTSNHF-HVFVGDLSPE 124
Query: 218 VTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKV 276
+T ED+K F FG I+ A V+KD + GKS+ +GFV+F + A A+ + G +
Sbjct: 125 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184
Query: 277 ----WYVGR--AQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELF 330
W + A K + + +FE + K +Y + + D+ +++ F
Sbjct: 185 IRTNWATRKPPAPKSTQETNTKQLRFED--VVNQSSPKNCTVYCGGIASGLTDQLMRQTF 242
Query: 331 SEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMI 375
S FG I +V + KG F FS E A A+ +NG I
Sbjct: 243 SPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 131 (51.2 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 45/167 (26%), Positives = 71/167 (42%)
Query: 30 LYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL 89
++VGDL + + F+ ++ RV +D + S GY +V++ N DA NA +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 90 NFMPINGKPIRIMYSHRDPSIRKSGYG-NV----F--IKNLDTSIDNKALCDTFAAFGTV 142
+ G+ IR ++ R P KS N F + N + + C A+ T
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
Query: 143 LSCKVAIDSNGQ--------SKGYGFVQFENEEAAQNAIKMLNGMLI 181
+ GQ KGY FV+F E+A +AI +NG I
Sbjct: 236 QLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTI 282
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 233 (87.1 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 66/220 (30%), Positives = 108/220 (49%)
Query: 71 YAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRK--SGYGNVFIKNLDTSID 128
Y +V + +DAA A A+N I GK +++ ++ S +K S + +VF+ +L I
Sbjct: 66 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 125
Query: 129 NKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVY 187
+ + FA FG + +V D + G+SKGYGFV F N+ A+NAI + G + +Q+
Sbjct: 126 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 185
Query: 188 VGLFVRRQ---ERAQQN-------------VSPKFTNVYVNNLAETVTDEDLKKIFGHFG 231
R+ + Q+N SPK VY +A +TD+ +++ F FG
Sbjct: 186 TNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFG 245
Query: 232 TITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTT 271
I V + + FV F + ++AA A+ +NGTT
Sbjct: 246 QIMEIRVFPEKG-----YSFVRFSTHESAAHAIVSVNGTT 280
Score = 210 (79.0 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 64/225 (28%), Positives = 104/225 (46%)
Query: 158 YGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAET 217
Y FV+F A A+ +NG I K+V V + +++ S F +V+V +L+
Sbjct: 66 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVN-WATTPSSQKKDTSNHF-HVFVGDLSPE 123
Query: 218 VTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKV 276
+T ED+K F FG I+ A V+KD + GKS+ +GFV+F + A A+ + G +
Sbjct: 124 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 183
Query: 277 ----WYVGR--AQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELF 330
W + A K + + +FE + K +Y + + D+ +++ F
Sbjct: 184 IRTNWATRKPPAPKSTQENNTKQLRFED--VVNQSSPKNCTVYCGGIASGLTDQLMRQTF 241
Query: 331 SEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMI 375
S FG I +V + KG F FS E A A+ +NG I
Sbjct: 242 SPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 281
Score = 135 (52.6 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 45/167 (26%), Positives = 71/167 (42%)
Query: 30 LYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL 89
++VGDL + + F+ ++ RV +D + S GY +V++ N DA NA +
Sbjct: 115 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 174
Query: 90 NFMPINGKPIRIMYSHRDPSIRKSGYGNV-----F--IKNLDTSIDNKALCDTFAAFGTV 142
+ G+ IR ++ R P KS N F + N + + C A+ T
Sbjct: 175 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 234
Query: 143 LSCKVAIDSNGQ--------SKGYGFVQFENEEAAQNAIKMLNGMLI 181
+ GQ KGY FV+F E+A +AI +NG I
Sbjct: 235 QLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTI 281
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 233 (87.1 bits), Expect = 8.7e-17, P = 8.7e-17
Identities = 66/220 (30%), Positives = 108/220 (49%)
Query: 71 YAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRK--SGYGNVFIKNLDTSID 128
Y +V + +DAA A A+N I GK +++ ++ S +K S + +VF+ +L I
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 126
Query: 129 NKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVY 187
+ + FA FG + +V D + G+SKGYGFV F N+ A+NAI + G + +Q+
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 188 VGLFVRRQ---ERAQQN-------------VSPKFTNVYVNNLAETVTDEDLKKIFGHFG 231
R+ + Q+N SPK VY +A +TD+ +++ F FG
Sbjct: 187 TNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFG 246
Query: 232 TITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTT 271
I V + + FV F + ++AA A+ +NGTT
Sbjct: 247 QIMEIRVFPEKG-----YSFVRFSTHESAAHAIVSVNGTT 281
Score = 210 (79.0 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 64/225 (28%), Positives = 104/225 (46%)
Query: 158 YGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAET 217
Y FV+F A A+ +NG I K+V V + +++ S F +V+V +L+
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVN-WATTPSSQKKDTSNHF-HVFVGDLSPE 124
Query: 218 VTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKV 276
+T ED+K F FG I+ A V+KD + GKS+ +GFV+F + A A+ + G +
Sbjct: 125 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184
Query: 277 ----WYVGR--AQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELF 330
W + A K + + +FE + K +Y + + D+ +++ F
Sbjct: 185 IRTNWATRKPPAPKSTQENNTKQLRFED--VVNQSSPKNCTVYCGGIASGLTDQLMRQTF 242
Query: 331 SEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMI 375
S FG I +V + KG F FS E A A+ +NG I
Sbjct: 243 SPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 135 (52.6 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 45/167 (26%), Positives = 71/167 (42%)
Query: 30 LYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL 89
++VGDL + + F+ ++ RV +D + S GY +V++ N DA NA +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 90 NFMPINGKPIRIMYSHRDPSIRKSGYGNV-----F--IKNLDTSIDNKALCDTFAAFGTV 142
+ G+ IR ++ R P KS N F + N + + C A+ T
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
Query: 143 LSCKVAIDSNGQ--------SKGYGFVQFENEEAAQNAIKMLNGMLI 181
+ GQ KGY FV+F E+A +AI +NG I
Sbjct: 236 QLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTI 282
>RGD|1307721 [details] [associations]
symbol:Celf1 "CUGBP, Elav-like family member 1" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0003729 "mRNA binding"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006376 "mRNA splice
site selection" evidence=IEA;ISO] [GO:0007286 "spermatid
development" evidence=IEA;ISO] [GO:0031369 "translation initiation
factor binding" evidence=IEA;ISO] [GO:0040018 "positive regulation
of multicellular organism growth" evidence=IEA;ISO] [GO:0042835
"BRE binding" evidence=IEA;ISO] [GO:0043484 "regulation of RNA
splicing" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307721
GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723
GO:GO:0043484 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658
eggNOG:NOG251494 HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X
GO:GO:0042835 GO:GO:0006376 EMBL:BC098012 IPI:IPI00373642
RefSeq:NP_001020592.1 UniGene:Rn.22432 ProteinModelPortal:Q4QQT3
SMR:Q4QQT3 STRING:Q4QQT3 PhosphoSite:Q4QQT3 PRIDE:Q4QQT3
GeneID:362160 KEGG:rno:362160 UCSC:RGD:1307721 InParanoid:Q4QQT3
NextBio:678844 Genevestigator:Q4QQT3 Uniprot:Q4QQT3
Length = 487
Score = 152 (58.6 bits), Expect = 9.3e-17, Sum P(3) = 9.3e-17
Identities = 34/92 (36%), Positives = 50/92 (54%)
Query: 302 SRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMP 360
S+ E +GANL++ +L D+ L ++F FG + S KV +D Q SK GF ++ P
Sbjct: 394 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNP 453
Query: 361 EEATRALNEMNGKMIGRKPLYVAVAQRKEERK 392
A A+ MNG IG K L V + + K + K
Sbjct: 454 VSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 485
Score = 138 (53.6 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 57/230 (24%), Positives = 105/230 (45%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFG--FVNFQSPDAAAAAVE 265
++V + T +++DL+++F +G + +++D S + G FV F + AA A
Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 266 KLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEK 325
L+ N KV G + AD E+ + E K L++ + +
Sbjct: 78 ALH----NMKV-LPGMHHPIQMKPAD------SEKNNAVEDRK---LFIGMISKKCTEND 123
Query: 326 LKELFSEFGTITSCKVMVDQHGFSKGSGFAAFS---MPEEATRALNEMNGKMIG-RKPLY 381
++ +FS FG I C+++ G S+G F F+ M + A +A+++ M G P+
Sbjct: 124 IRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQ-TMEGCSSPMV 182
Query: 382 VAVAQRKEERKARLQAQFAQIRAPGGMSPL-ASGIPGYHHGAPRLGPQQL 430
V A +++++ + AQ Q + M + A+ + G G LGPQ L
Sbjct: 183 VKFADTQKDKEQKRMAQQLQQQ----MQQISAASVWGNLAGLNTLGPQYL 228
Score = 137 (53.3 bits), Expect = 9.3e-17, Sum P(3) = 9.3e-17
Identities = 39/154 (25%), Positives = 69/154 (44%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKR--SSLGYAYVNYSNPQDAANA 85
+ ++VG + + +E L +LF Q V + + RD+S+ S G +V + + A A
Sbjct: 16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 86 KEALNFMPI-NGKPIRIMYSHRDPSIRKSGYGN-VFIKNLDTSIDNKALCDTFAAFGTVL 143
+ AL+ M + G I D + +FI + + F++FG +
Sbjct: 76 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135
Query: 144 SCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
C++ +G S+G FV F AQ AIK ++
Sbjct: 136 ECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMH 169
Score = 133 (51.9 bits), Expect = 5.8e-15, Sum P(2) = 5.8e-15
Identities = 26/71 (36%), Positives = 44/71 (61%)
Query: 200 QNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGK-SRCFGFVNFQSPD 258
Q P+ N+++ +L + D+DL ++F FG + SA V D S+CFGFV++ +P
Sbjct: 395 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV 454
Query: 259 AAAAAVEKLNG 269
+A AA++ +NG
Sbjct: 455 SAQAAIQSMNG 465
Score = 125 (49.1 bits), Expect = 8.4e-16, Sum P(2) = 8.4e-16
Identities = 41/189 (21%), Positives = 85/189 (44%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNG---QSKGYGFVQFENEEAAQNAIK 174
+F+ + + K L + F +G V + D + QSKG FV F +AA A
Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 175 MLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTIT 234
L+ M + + + +++N + + +++ +++ T+ D++ +F FG I
Sbjct: 78 ALHNMKVLPGMHHP--IQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRA 294
+++ DG SR FV F + A A++ ++ + G + + AD +
Sbjct: 136 ECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTME-----GCSSPMVVKFADTQK 190
Query: 295 KFEQERISR 303
EQ+R+++
Sbjct: 191 DKEQKRMAQ 199
Score = 123 (48.4 bits), Expect = 0.00027, P = 0.00027
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQ-SKGYGFVQFENEEAAQNAIKM 175
N+FI +L ++ L F FG V+S KV ID SK +GFV ++N +AQ AI+
Sbjct: 403 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 462
Query: 176 LNGMLINDKQVYVGL 190
+NG I K++ V L
Sbjct: 463 MNGFQIGMKRLKVQL 477
Score = 38 (18.4 bits), Expect = 9.3e-17, Sum P(3) = 9.3e-17
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 238 VMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTT 271
V+ S G S N +P A+ A++ L G T
Sbjct: 293 VLTSSAGSSPSSSSSNSVNPIASLGALQTLAGAT 326
>UNIPROTKB|Q4QQT3 [details] [associations]
symbol:Celf1 "CUGBP Elav-like family member 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1307721 GO:GO:0005634
GO:GO:0005737 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723 GO:GO:0043484
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
EMBL:BC098012 IPI:IPI00373642 RefSeq:NP_001020592.1
UniGene:Rn.22432 ProteinModelPortal:Q4QQT3 SMR:Q4QQT3 STRING:Q4QQT3
PhosphoSite:Q4QQT3 PRIDE:Q4QQT3 GeneID:362160 KEGG:rno:362160
UCSC:RGD:1307721 InParanoid:Q4QQT3 NextBio:678844
Genevestigator:Q4QQT3 Uniprot:Q4QQT3
Length = 487
Score = 152 (58.6 bits), Expect = 9.3e-17, Sum P(3) = 9.3e-17
Identities = 34/92 (36%), Positives = 50/92 (54%)
Query: 302 SRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMP 360
S+ E +GANL++ +L D+ L ++F FG + S KV +D Q SK GF ++ P
Sbjct: 394 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNP 453
Query: 361 EEATRALNEMNGKMIGRKPLYVAVAQRKEERK 392
A A+ MNG IG K L V + + K + K
Sbjct: 454 VSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 485
Score = 138 (53.6 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 57/230 (24%), Positives = 105/230 (45%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFG--FVNFQSPDAAAAAVE 265
++V + T +++DL+++F +G + +++D S + G FV F + AA A
Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 266 KLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEK 325
L+ N KV G + AD E+ + E K L++ + +
Sbjct: 78 ALH----NMKV-LPGMHHPIQMKPAD------SEKNNAVEDRK---LFIGMISKKCTEND 123
Query: 326 LKELFSEFGTITSCKVMVDQHGFSKGSGFAAFS---MPEEATRALNEMNGKMIG-RKPLY 381
++ +FS FG I C+++ G S+G F F+ M + A +A+++ M G P+
Sbjct: 124 IRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQ-TMEGCSSPMV 182
Query: 382 VAVAQRKEERKARLQAQFAQIRAPGGMSPL-ASGIPGYHHGAPRLGPQQL 430
V A +++++ + AQ Q + M + A+ + G G LGPQ L
Sbjct: 183 VKFADTQKDKEQKRMAQQLQQQ----MQQISAASVWGNLAGLNTLGPQYL 228
Score = 137 (53.3 bits), Expect = 9.3e-17, Sum P(3) = 9.3e-17
Identities = 39/154 (25%), Positives = 69/154 (44%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKR--SSLGYAYVNYSNPQDAANA 85
+ ++VG + + +E L +LF Q V + + RD+S+ S G +V + + A A
Sbjct: 16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 86 KEALNFMPI-NGKPIRIMYSHRDPSIRKSGYGN-VFIKNLDTSIDNKALCDTFAAFGTVL 143
+ AL+ M + G I D + +FI + + F++FG +
Sbjct: 76 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135
Query: 144 SCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
C++ +G S+G FV F AQ AIK ++
Sbjct: 136 ECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMH 169
Score = 133 (51.9 bits), Expect = 5.8e-15, Sum P(2) = 5.8e-15
Identities = 26/71 (36%), Positives = 44/71 (61%)
Query: 200 QNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGK-SRCFGFVNFQSPD 258
Q P+ N+++ +L + D+DL ++F FG + SA V D S+CFGFV++ +P
Sbjct: 395 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV 454
Query: 259 AAAAAVEKLNG 269
+A AA++ +NG
Sbjct: 455 SAQAAIQSMNG 465
Score = 125 (49.1 bits), Expect = 8.4e-16, Sum P(2) = 8.4e-16
Identities = 41/189 (21%), Positives = 85/189 (44%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNG---QSKGYGFVQFENEEAAQNAIK 174
+F+ + + K L + F +G V + D + QSKG FV F +AA A
Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 175 MLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTIT 234
L+ M + + + +++N + + +++ +++ T+ D++ +F FG I
Sbjct: 78 ALHNMKVLPGMHHP--IQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135
Query: 235 SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRA 294
+++ DG SR FV F + A A++ ++ + G + + AD +
Sbjct: 136 ECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTME-----GCSSPMVVKFADTQK 190
Query: 295 KFEQERISR 303
EQ+R+++
Sbjct: 191 DKEQKRMAQ 199
Score = 123 (48.4 bits), Expect = 0.00027, P = 0.00027
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQ-SKGYGFVQFENEEAAQNAIKM 175
N+FI +L ++ L F FG V+S KV ID SK +GFV ++N +AQ AI+
Sbjct: 403 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 462
Query: 176 LNGMLINDKQVYVGL 190
+NG I K++ V L
Sbjct: 463 MNGFQIGMKRLKVQL 477
Score = 38 (18.4 bits), Expect = 9.3e-17, Sum P(3) = 9.3e-17
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 238 VMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTT 271
V+ S G S N +P A+ A++ L G T
Sbjct: 293 VLTSSAGSSPSSSSSNSVNPIASLGALQTLAGAT 326
>UNIPROTKB|G5EA30 [details] [associations]
symbol:CELF1 "CUG triplet repeat, RNA binding protein 1,
isoform CRA_c" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471064 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC090559 UniGene:Hs.595333
HGNC:HGNC:2549 ChiTaRS:CELF1 OMA:PTLYNQS ProteinModelPortal:G5EA30
SMR:G5EA30 PRIDE:G5EA30 Ensembl:ENST00000531165 ArrayExpress:G5EA30
Bgee:G5EA30 Uniprot:G5EA30
Length = 514
Score = 152 (58.6 bits), Expect = 9.6e-17, Sum P(3) = 9.6e-17
Identities = 34/92 (36%), Positives = 50/92 (54%)
Query: 302 SRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMP 360
S+ E +GANL++ +L D+ L ++F FG + S KV +D Q SK GF ++ P
Sbjct: 421 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNP 480
Query: 361 EEATRALNEMNGKMIGRKPLYVAVAQRKEERK 392
A A+ MNG IG K L V + + K + K
Sbjct: 481 VSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 512
Score = 139 (54.0 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 58/230 (25%), Positives = 105/230 (45%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFG--FVNFQSPDAAAAAVE 265
++V + T +++DL+++F +G + V++D S + G FV F + AA A
Sbjct: 45 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 104
Query: 266 KLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEK 325
L+ N KV G + AD E+ + E K L++ + +
Sbjct: 105 ALH----NMKV-LPGMHHPIQMKPAD------SEKNNAVEDRK---LFIGMISKKCTEND 150
Query: 326 LKELFSEFGTITSCKVMVDQHGFSKGSGFAAFS---MPEEATRALNEMNGKMIG-RKPLY 381
++ +FS FG I C+++ G S+G F F+ M + A +A+++ M G P+
Sbjct: 151 IRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQ-TMEGCSSPMV 209
Query: 382 VAVAQRKEERKARLQAQFAQIRAPGGMSPL-ASGIPGYHHGAPRLGPQQL 430
V A +++++ + AQ Q + M + A+ + G G LGPQ L
Sbjct: 210 VKFADTQKDKEQKRMAQQLQQQ----MQQISAASVWGNLAGLNTLGPQYL 255
Score = 138 (53.6 bits), Expect = 9.6e-17, Sum P(3) = 9.6e-17
Identities = 40/154 (25%), Positives = 69/154 (44%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKR--SSLGYAYVNYSNPQDAANA 85
+ ++VG + + +E L +LF Q V + V RD+S+ S G +V + + A A
Sbjct: 43 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 102
Query: 86 KEALNFMPI-NGKPIRIMYSHRDPSIRKSGYGN-VFIKNLDTSIDNKALCDTFAAFGTVL 143
+ AL+ M + G I D + +FI + + F++FG +
Sbjct: 103 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 162
Query: 144 SCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
C++ +G S+G FV F AQ AIK ++
Sbjct: 163 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMH 196
Score = 133 (51.9 bits), Expect = 5.3e-15, Sum P(2) = 5.3e-15
Identities = 26/71 (36%), Positives = 44/71 (61%)
Query: 200 QNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGK-SRCFGFVNFQSPD 258
Q P+ N+++ +L + D+DL ++F FG + SA V D S+CFGFV++ +P
Sbjct: 422 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV 481
Query: 259 AAAAAVEKLNG 269
+A AA++ +NG
Sbjct: 482 SAQAAIQSMNG 492
Score = 128 (50.1 bits), Expect = 4.9e-16, Sum P(2) = 4.9e-16
Identities = 49/220 (22%), Positives = 97/220 (44%)
Query: 88 ALNFMPINGKPIRIMYSHRD-PSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCK 146
+LN P++ K + H D P + +F+ + + K L + F +G V
Sbjct: 18 SLNSSPVS-KKMNGTLDHPDQPDLDAI---KMFVGQVPRTWSEKDLRELFEQYGAVYEIN 73
Query: 147 VAIDSNG---QSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVS 203
V D + QSKG FV F +AA A L+ M + + + +++N +
Sbjct: 74 VLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHP--IQMKPADSEKNNA 131
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAA 263
+ +++ +++ T+ D++ +F FG I +++ DG SR FV F + A A
Sbjct: 132 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTA 191
Query: 264 VEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISR 303
++ ++ + G + + AD + EQ+R+++
Sbjct: 192 IKAMHQAQTME-----GCSSPMVVKFADTQKDKEQKRMAQ 226
Score = 123 (48.4 bits), Expect = 0.00029, P = 0.00029
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQ-SKGYGFVQFENEEAAQNAIKM 175
N+FI +L ++ L F FG V+S KV ID SK +GFV ++N +AQ AI+
Sbjct: 430 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 489
Query: 176 LNGMLINDKQVYVGL 190
+NG I K++ V L
Sbjct: 490 MNGFQIGMKRLKVQL 504
Score = 38 (18.4 bits), Expect = 9.6e-17, Sum P(3) = 9.6e-17
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 238 VMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTT 271
V+ S G S N +P A+ A++ L G T
Sbjct: 320 VLTSSAGSSPSSSSSNSVNPIASLGALQTLAGAT 353
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 233 (87.1 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 85/347 (24%), Positives = 150/347 (43%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSN-GQSKGYGFVQFENEEAAQNAIKML 176
++I +L +D L FA G ++S KV + GQ +GYGF++F + AA+ ++
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 177 NGMLIND--KQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIF-GHFGTI 233
N I Q++ + +++ SP +T ++V +LA VTD L + F + ++
Sbjct: 124 NNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYT-IFVGDLAADVTDYILLETFRASYPSV 182
Query: 234 TSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADL 292
A V+ D G+++ +GFV F A+ ++NG + + +G A + +
Sbjct: 183 KGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASK-KGVTGQ 241
Query: 293 RAKFEQER--ISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSK 350
R ++ ++ +++ LD S+ D+ LK +FS++G I K+ K
Sbjct: 242 RDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPA-----GK 296
Query: 351 GSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRAPGGMSP 410
GF FS A AL +NG +G + ++ + +++ +QF G
Sbjct: 297 RCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSPSNKQSGDPSQFYYGGYGQGQEQ 356
Query: 411 LASGIP--------GYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYGF 449
+P GY G G QQ P PPQ GF
Sbjct: 357 YGYTMPQDPNAYYGGYSGGGYSGGYQQTPQAGQQPPQQPPQQQQVGF 403
Score = 205 (77.2 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 65/257 (25%), Positives = 118/257 (45%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+L++GDL+ ++E+ LY F+ ++VS +V R++ GY ++ +++ A +
Sbjct: 63 TLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQT 122
Query: 89 LNFMPINGKP---IRIMYSHRDPSIRKSGYGN--VFIKNLDTSIDNKALCDTF-AAFGTV 142
N PI P R+ ++ ++ + +F+ +L + + L +TF A++ +V
Sbjct: 123 FNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSV 182
Query: 143 LSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQ------ 195
KV ID G++KGYGFV+F +E A+ +NG+ + + + +G ++
Sbjct: 183 KGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQR 242
Query: 196 ERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSA---IVMKDSDGKSRCFGFV 252
+ Q + + T+ NN V D H + S IV RC GFV
Sbjct: 243 DSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRC-GFV 301
Query: 253 NFQSPDAAAAAVEKLNG 269
F A A+ LNG
Sbjct: 302 QFSEKSCAEEALRMLNG 318
Score = 149 (57.5 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 47/177 (26%), Positives = 83/177 (46%)
Query: 29 SLYVGDLEQNVNESQLYDLF-SQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKE 87
+++VGDL +V + L + F + V +V D+ + GY +V +S+ + A
Sbjct: 156 TIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMT 215
Query: 88 ALNFMPINGKPIRI--------MYSHRDPSIRKSGYG----------NVFIKNLDTSIDN 129
+N +P + +P+RI + RD S + S G VF+ LD S+ +
Sbjct: 216 EMNGVPCSTRPMRIGPAASKKGVTGQRD-SYQSSAAGVTTDNDPNNTTVFVGGLDASVTD 274
Query: 130 KALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQV 186
L + F+ +G ++ K+ K GFVQF + A+ A++MLNG+ + V
Sbjct: 275 DHLKNVFSQYGEIVHVKIPA-----GKRCGFVQFSEKSCAEEALRMLNGVQLGGTTV 326
Score = 137 (53.3 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 49/194 (25%), Positives = 90/194 (46%)
Query: 199 QQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSD-GKSRCFGFVNFQSP 257
Q + + +++ +L + + L F H G + SA V+++ G+ +GF+ F
Sbjct: 54 QPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEF--- 110
Query: 258 DAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNL 317
A+ AA E++ T NN + R A L + +++ Y +++ +L
Sbjct: 111 -ASHAAAERVLQTFNNAPIPSFPDQLFRLNW-ASLSSGDKRDDSPDY------TIFVGDL 162
Query: 318 DDSINDEKLKELF-SEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMI 375
+ D L E F + + ++ KV++D+ G +KG GF FS E RA+ EMNG
Sbjct: 163 AADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPC 222
Query: 376 GRKPLYVAVAQRKE 389
+P+ + A K+
Sbjct: 223 STRPMRIGPAASKK 236
>ZFIN|ZDB-GENE-110408-50 [details] [associations]
symbol:celf3b "cugbp, Elav-like family member 3b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-110408-50 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX005277 EMBL:CABZ01052818 EMBL:CABZ01052819 EMBL:CABZ01052820
EMBL:CABZ01052821 EMBL:CABZ01052822 IPI:IPI00506596
Ensembl:ENSDART00000024206 Uniprot:E7F293
Length = 442
Score = 144 (55.7 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 40/153 (26%), Positives = 71/153 (46%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKE 87
+ L++G + +N+ E L +F Q ++ + V +D+ G A++ Y + A A+
Sbjct: 7 IKLFIGQIPRNLEEKDLKPIFEQYGKIYELTVIKDKYTGMHKGCAFLTYCARESAIKAQS 66
Query: 88 ALNFMP-INGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCK 146
AL++ +G I D R +F+ L ++ + F FG + C
Sbjct: 67 ALHYSSGYSGMNRPIQVKPADSEGRGEDR-KLFVGMLGKQQSDEDVRKIFEPFGGIDECT 125
Query: 147 VAIDSNGQSK-GYGFVQFENEEAAQNAIKMLNG 178
V +G SK G FV+F++ AQ+AI L+G
Sbjct: 126 VLRGPDGTSKAGCAFVKFQSHSEAQSAINSLHG 158
Score = 144 (55.7 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 63/254 (24%), Positives = 104/254 (40%)
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAA 262
P +++ + + ++DLK IF +G I V+KD G + F+ + + ++A
Sbjct: 4 PDAIKLFIGQIPRNLEEKDLKPIFEQYGKIYELTVIKDKYTGMHKGCAFLTYCARESAIK 63
Query: 263 AVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
A L+ ++ Y G + + AD + E + L++ L +
Sbjct: 64 AQSALHYSSG-----YSGMNRPIQVKPADSEGRGEDRK-----------LFVGMLGKQQS 107
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSK-GSGFAAFSMPEEATRALNEMNGKMI---GRK 378
DE ++++F FG I C V+ G SK G F F EA A+N ++G
Sbjct: 108 DEDVRKIFEPFGGIDECTVLRGPDGTSKAGCAFVKFQSHSEAQSAINSLHGSRTLPGASS 167
Query: 379 PLYVAVAQRKEERKAR-LQAQFAQIRAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTP 437
L V A ++ER R +Q +Q+ G +P+ Y+ L QQ Q
Sbjct: 168 SLVVKFADTEKERGVRRMQQVTSQL---GVYTPVTLNFNAYNGKDQELVQQQALVAQAQY 224
Query: 438 GLMPPQAAGYGFQQ 451
L P AA QQ
Sbjct: 225 -LSP--AASMQIQQ 235
Score = 139 (54.0 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 26/72 (36%), Positives = 46/72 (63%)
Query: 199 QQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSP 257
+ N P+ NV++ +L + TD ++ ++F FG + SA V D + +S+CFGFV+F +P
Sbjct: 349 EANTGPEGCNVFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNP 408
Query: 258 DAAAAAVEKLNG 269
+A A++ +NG
Sbjct: 409 ASAQTAIQAMNG 420
Score = 138 (53.6 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 31/75 (41%), Positives = 44/75 (58%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKM 175
NVFI +L + + F FG V+S KV +D + QSK +GFV F+N +AQ AI+
Sbjct: 358 NVFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQTAIQA 417
Query: 176 LNGMLINDKQVYVGL 190
+NG I K++ V L
Sbjct: 418 MNGFQIGMKRLKVQL 432
Score = 136 (52.9 bits), Expect = 8.7e-15, Sum P(2) = 8.7e-15
Identities = 44/156 (28%), Positives = 74/156 (47%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKML 176
+FI + +++ K L F +G + V D G KG F+ + A ++AIK
Sbjct: 9 LFIGQIPRNLEEKDLKPIFEQYGKIYELTVIKDKYTGMHKGCAFLTYC---ARESAIKAQ 65
Query: 177 NGMLINDKQVYVGLFVRRQER-AQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITS 235
+ + + Y G+ Q + A + ++V L + +DED++KIF FG I
Sbjct: 66 SALHYSSG--YSGMNRPIQVKPADSEGRGEDRKLFVGMLGKQQSDEDVRKIFEPFGGIDE 123
Query: 236 AIVMKDSDGKSRC-FGFVNFQSPDAAAAAVEKLNGT 270
V++ DG S+ FV FQS A +A+ L+G+
Sbjct: 124 CTVLRGPDGTSKAGCAFVKFQSHSEAQSAINSLHGS 159
Score = 131 (51.2 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRA 366
+G N+++ +L D ++ ++F FG + S KV VD+ SK GF +F P A A
Sbjct: 355 EGCNVFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQTA 414
Query: 367 LNEMNGKMIGRKPLYVAVAQRKEERK 392
+ MNG IG K L V + + K+ +
Sbjct: 415 IQAMNGFQIGMKRLKVQLKRPKDANR 440
>DICTYBASE|DDB_G0290307 [details] [associations]
symbol:DDB_G0290307 "ELAVL1-like protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
Length = 459
Score = 145 (56.1 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
Identities = 31/81 (38%), Positives = 49/81 (60%)
Query: 109 SIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSN-GQSKGYGFVQFENEE 167
S + GN+FI L + + L F+AFG + SC+V +D N G S+G+GFV+F++
Sbjct: 92 SSNSANSGNLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVA 151
Query: 168 AAQNAIKMLNGMLINDKQVYV 188
+AQ AI +NG + +K + V
Sbjct: 152 SAQYAINSMNGAKVENKTLLV 172
Score = 138 (53.6 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 31/76 (40%), Positives = 42/76 (55%)
Query: 311 NLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNE 369
NL++ L + + L+ +FS FG I SC+VMVD + G S+G GF F A A+N
Sbjct: 100 NLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINS 159
Query: 370 MNGKMIGRKPLYVAVA 385
MNG + K L V A
Sbjct: 160 MNGAKVENKTLLVRFA 175
Score = 133 (51.9 bits), Expect = 2.3e-16, Sum P(3) = 2.3e-16
Identities = 30/87 (34%), Positives = 49/87 (56%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKM 175
NVFI+ L D L + F+A+G V+ K+ ID + S+G G V++ + ++A NA+K
Sbjct: 220 NVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQSAINAVKS 279
Query: 176 LNGMLIND--KQVYVGLFVRRQERAQQ 200
LNG ++ D K + V E+ Q+
Sbjct: 280 LNGFILQDPEKPLIVRFADNEDEKKQK 306
Score = 130 (50.8 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 47/187 (25%), Positives = 79/187 (42%)
Query: 244 GKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQK--------RAEREAD---- 291
G SR FGFV F+ +A A+ +NG +K V A + D
Sbjct: 137 GLSRGFGFVKFKDVASAQYAINSMNGAKVENKTLLVRFANSDPNSNNTNNSNNNNDDDNN 196
Query: 292 ---LRAKFEQERISRYEKLK-GANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QH 346
+ ++ K N++++ L + +L ELFS +G + K+++D
Sbjct: 197 NNNNNNNSNNNNTNNIDEQKISNNVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITT 256
Query: 347 GFSKGSGFAAFSMPEEATRALNEMNGKMIG--RKPLYVAVAQRKEERKARLQA-QFAQIR 403
S+G G + + A A+ +NG ++ KPL V A ++E+K + Q Q Q+R
Sbjct: 257 NASRGQGLVRYIDTQSAINAVKSLNGFILQDPEKPLIVRFADNEDEKKQKRQKLQQKQVR 316
Query: 404 APGGMSP 410
SP
Sbjct: 317 QNMRFSP 323
Score = 119 (46.9 bits), Expect = 0.00068, P = 0.00068
Identities = 25/80 (31%), Positives = 45/80 (56%)
Query: 24 GYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAA 83
G +LYV +L + ++S LY LFS + SV++ RDQ+ + GY +V + D+
Sbjct: 378 GTDPTNLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMVSLADSY 437
Query: 84 NAKEALNFMPINGKPIRIMY 103
+A ++N + + GK I + +
Sbjct: 438 SAINSINGVQVGGKTISVSF 457
Score = 117 (46.2 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 28/73 (38%), Positives = 40/73 (54%)
Query: 208 NVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEK 266
N++++ L T T + L+ IF FG I S VM D + G SR FGFV F+ +A A+
Sbjct: 100 NLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINS 159
Query: 267 LNGTTNNDKVWYV 279
+NG +K V
Sbjct: 160 MNGAKVENKTLLV 172
Score = 106 (42.4 bits), Expect = 2.3e-16, Sum P(3) = 2.3e-16
Identities = 26/74 (35%), Positives = 38/74 (51%)
Query: 311 NLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHG-FSKGSGFAAFSMPEEATRALNE 369
NLY+ NL +D L LFS G I S K++ DQ +G GF ++ A+N
Sbjct: 383 NLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMVSLADSYSAINS 442
Query: 370 MNGKMIGRKPLYVA 383
+NG +G K + V+
Sbjct: 443 INGVQVGGKTISVS 456
Score = 101 (40.6 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQ-SKGYGFVQFENEEAAQNAIKM 175
N+++ NL + D+ L F+ G + S K+ D Q +GYGFV+ + + +AI
Sbjct: 383 NLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMVSLADSYSAINS 442
Query: 176 LNGMLINDKQVYV 188
+NG+ + K + V
Sbjct: 443 INGVQVGGKTISV 455
Score = 86 (35.3 bits), Expect = 2.5e-14, Sum P(3) = 2.5e-14
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGK-SRCFGFVNFQSPDAAAAAVE 265
TN+YV NL D L ++F G I S +++D + R +GFV S + +A+
Sbjct: 382 TNLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMVSLADSYSAIN 441
Query: 266 KLNG 269
+NG
Sbjct: 442 SING 445
Score = 85 (35.0 bits), Expect = 2.3e-16, Sum P(3) = 2.3e-16
Identities = 19/89 (21%), Positives = 40/89 (44%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+L++ L L +FS ++ S RV D + S G+ +V + + A A +
Sbjct: 100 NLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINS 159
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGN 117
+N + K + + +++ DP+ + N
Sbjct: 160 MNGAKVENKTLLVRFANSDPNSNNTNNSN 188
Score = 84 (34.6 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 21/81 (25%), Positives = 43/81 (53%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
++++ L +++QL +LFS +VV ++ D + +S G V Y + Q A NA ++
Sbjct: 220 NVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQSAINAVKS 279
Query: 89 LNFMPING--KPIRIMYSHRD 107
LN + KP+ + ++ +
Sbjct: 280 LNGFILQDPEKPLIVRFADNE 300
Score = 80 (33.2 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 42/174 (24%), Positives = 69/174 (39%)
Query: 136 FAAFGTVLSCKVAIDS-NG---QSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLF 191
F F V S + AI+S NG ++K V+F N + N N +D
Sbjct: 144 FVKFKDVASAQYAINSMNGAKVENKTL-LVRFANSDPNSNNTNNSNNNNDDDNNNNNNNN 202
Query: 192 VRRQERAQQNVSPKFTN-VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCF 249
K +N V++ L L ++F +G + + ++ D + SR
Sbjct: 203 NSNNNNTNNIDEQKISNNVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQ 262
Query: 250 GFVNFQSPDAAAAAVEKLNGTTNND--KVWYVGRAQKRAEREADLRAKFEQERI 301
G V + +A AV+ LNG D K V A E++ R K +Q+++
Sbjct: 263 GLVRYIDTQSAINAVKSLNGFILQDPEKPLIVRFADNEDEKKQK-RQKLQQKQV 315
Score = 45 (20.9 bits), Expect = 3.6e-10, Sum P(3) = 3.6e-10
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 471 QRQVHPGQRTGVRRSGNTHQMQQPQFMRNSNQGIRY 506
Q+QV R Q QQ Q M NS+ + Y
Sbjct: 312 QKQVRQNMRFSPYPQQQQQQQQQQQQMMNSSGAMMY 347
>UNIPROTKB|Q5R995 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9601
"Pongo abelii" [GO:0003723 "RNA binding" evidence=ISS] [GO:0043484
"regulation of RNA splicing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 EMBL:CR859496
RefSeq:NP_001125976.1 UniGene:Pab.4290 ProteinModelPortal:Q5R995
SMR:Q5R995 PRIDE:Q5R995 GeneID:100172914 KEGG:pon:100172914
InParanoid:Q5R995 Uniprot:Q5R995
Length = 513
Score = 152 (58.6 bits), Expect = 2.4e-16, Sum P(3) = 2.4e-16
Identities = 34/92 (36%), Positives = 50/92 (54%)
Query: 302 SRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMP 360
S+ E +GANL++ +L D+ L ++F FG + S KV +D Q SK GF ++ P
Sbjct: 420 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNP 479
Query: 361 EEATRALNEMNGKMIGRKPLYVAVAQRKEERK 392
A A+ MNG IG K L V + + K + K
Sbjct: 480 VSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 511
Score = 134 (52.2 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 49/195 (25%), Positives = 85/195 (43%)
Query: 82 AANAKEALNFMPINGKPIRIMYSH-RDPSIRKSGYGNVF--IKNLDTSIDNKALCDTFAA 138
A N N + + P+ ++ S PS S N + L T A + +
Sbjct: 301 AQNTPSGTNALTTSSSPLSVLTSSGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSL 360
Query: 139 FGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQE-- 196
G + + + S+G S G G E A + I+ + +Y + +Q
Sbjct: 361 AG-MAALNGGLGSSGLSNGTGSTM-EALTQAYSGIQQYAAAAL--PTLYNQNLLTQQSIG 416
Query: 197 -RAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGK-SRCFGFVNF 254
Q P+ N+++ +L + D+DL ++F FG + SA V D S+CFGFV++
Sbjct: 417 AAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSY 476
Query: 255 QSPDAAAAAVEKLNG 269
+P +A AA++ +NG
Sbjct: 477 DNPVSAQAAIQSMNG 491
Score = 133 (51.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 57/230 (24%), Positives = 104/230 (45%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFG--FVNFQSPDAAAAAVE 265
++V + T +++DL+++F +G + V++D S + G FV F + AA A
Sbjct: 45 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 104
Query: 266 KLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEK 325
L+ N KV G + AD E+ + E K L++ + +
Sbjct: 105 ALH----NMKV-LPGMHHPIQMKPAD------SEKNNAVEDRK---LFIGMISKKCTEND 150
Query: 326 LKELFSEFGTITSCKVMVDQHGFSKGSGFAAFS---MPEEATRALNEMNGKMIG-RKPLY 381
++ +FS FG I C+++ G S+G F+ M + A +A+++ M G P+
Sbjct: 151 IRVMFSSFGQIEECRILWGPDGLSRGCALVTFTTRAMAQTAIKAMHQAQ-TMEGCSSPMV 209
Query: 382 VAVAQRKEERKARLQAQFAQIRAPGGMSPL-ASGIPGYHHGAPRLGPQQL 430
V A +++++ + AQ Q + M + A+ + G G LGPQ L
Sbjct: 210 VKFADTQKDKEQKRMAQQLQQQ----MQQISAASVWGNLAGLNTLGPQYL 255
Score = 132 (51.5 bits), Expect = 2.4e-16, Sum P(3) = 2.4e-16
Identities = 39/154 (25%), Positives = 68/154 (44%)
Query: 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKR--SSLGYAYVNYSNPQDAANA 85
+ ++VG + + +E L +LF Q V + V RD+S+ S G +V + + A A
Sbjct: 43 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 102
Query: 86 KEALNFMPI-NGKPIRIMYSHRDPSIRKSGYGN-VFIKNLDTSIDNKALCDTFAAFGTVL 143
+ AL+ M + G I D + +FI + + F++FG +
Sbjct: 103 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 162
Query: 144 SCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
C++ +G S+G V F AQ AIK ++
Sbjct: 163 ECRILWGPDGLSRGCALVTFTTRAMAQTAIKAMH 196
Score = 123 (48.4 bits), Expect = 0.00029, P = 0.00029
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQ-SKGYGFVQFENEEAAQNAIKM 175
N+FI +L ++ L F FG V+S KV ID SK +GFV ++N +AQ AI+
Sbjct: 429 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 488
Query: 176 LNGMLINDKQVYVGL 190
+NG I K++ V L
Sbjct: 489 MNGFQIGMKRLKVQL 503
Score = 117 (46.2 bits), Expect = 6.8e-15, Sum P(2) = 6.8e-15
Identities = 48/220 (21%), Positives = 95/220 (43%)
Query: 88 ALNFMPINGKPIRIMYSHRD-PSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCK 146
+LN P++ K + H D P + +F+ + + K L + F +G V
Sbjct: 18 SLNSSPVS-KKMNGTLDHPDQPDLDAI---KMFVGQVPRTWSEKDLRELFEQYGAVYEIN 73
Query: 147 VAIDSNG---QSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVS 203
V D + QSKG FV F +AA A L+ M + + + +++N +
Sbjct: 74 VLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHP--IQMKPADSEKNNA 131
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAA 263
+ +++ +++ T+ D++ +F FG I ++ DG SR V F + A A
Sbjct: 132 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILWGPDGLSRGCALVTFTTRAMAQTA 191
Query: 264 VEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISR 303
++ ++ + G + + AD + EQ+R+++
Sbjct: 192 IKAMHQAQTME-----GCSSPMVVKFADTQKDKEQKRMAQ 226
Score = 40 (19.1 bits), Expect = 2.4e-16, Sum P(3) = 2.4e-16
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 232 TITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTT 271
T +S + + S G S N +P A+ A++ L G T
Sbjct: 313 TSSSPLSVLTSSGSSPSSSSSNSVNPIASLGALQTLAGAT 352
>SGD|S000001057 [details] [associations]
symbol:MIP6 "Putative RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005643 "nuclear pore" evidence=IPI]
[GO:0006406 "mRNA export from nucleus" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000001057 GO:GO:0005737 GO:GO:0000166
EMBL:BK006934 Gene3D:3.30.70.330 GO:GO:0005643 GO:GO:0003723
GO:GO:0006406 EMBL:U10400 PIR:S46788 RefSeq:NP_011879.1
ProteinModelPortal:P38760 SMR:P38760 DIP:DIP-6647N IntAct:P38760
MINT:MINT-644353 STRING:P38760 EnsemblFungi:YHR015W GeneID:856408
KEGG:sce:YHR015W CYGD:YHR015w eggNOG:NOG271400
GeneTree:ENSGT00550000075863 HOGENOM:HOG000000869 OrthoDB:EOG45HW68
NextBio:981953 Genevestigator:P38760 GermOnline:YHR015W
Uniprot:P38760
Length = 659
Score = 235 (87.8 bits), Expect = 2.5e-16, P = 2.5e-16
Identities = 89/368 (24%), Positives = 162/368 (44%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
SL++G+L+ V E L +F + S +VCRD + SLGY Y+N+ + DA +A++
Sbjct: 112 SLFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGYGYLNFKDKNDAESARKE 171
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNL---DTSIDNKALCDTFAAFGTVLSC 145
N+ G+ ++IM S ++ RK+ NVF NL + + ++ +G VLSC
Sbjct: 172 FNYTVFFGQEVKIMPSMKNTLFRKNIGTNVFFSNLPLENPQLTTRSFYLIMIEYGNVLSC 231
Query: 146 KVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPK 205
+ + K GFV F+N+ +A+N IK N ++ GL ++ R + P+
Sbjct: 232 LLE-----RRKNIGFVYFDNDISARNVIKKYNNQEFFGNKIICGLHFDKEVRTR----PE 282
Query: 206 FTNVYVNNLAETVTDEDLKKIFGHFGTITS-AIVMKD--SDG-KSRCFGFVNFQSPDAAA 261
FT ++ V +++L S I++K+ SD + + + P +
Sbjct: 283 FTKRKKMIGSDIVIEDELLASNNLSDNARSKTILVKNLPSDTTQEEVLDYFSTIGPIKSV 342
Query: 262 AAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERI-----------SRYEKLKGA 310
EK T + V Y + + ++ + F+ I ++ K
Sbjct: 343 FISEKQANTPHKAFVTYKNEEESKKAQKCLNKTIFKNHTIWVGPGKDKPVHNQIGTNKKT 402
Query: 311 NLYLKNLDDSINDEKLKEL-FSEFGTITSCKVM-VDQHGFSKGSGFAAFSMPEEATRALN 368
+YLKNL + N E + +L E + K+ + ++ FS +A R N
Sbjct: 403 KVYLKNLSFNCNKEFISQLCLQEKIRFSEIKITNYNSLNWTFCGHVECFSR-SDAERLFN 461
Query: 369 EMNGKMIG 376
++ ++IG
Sbjct: 462 ILDRRLIG 469
Score = 126 (49.4 bits), Expect = 0.00020, P = 0.00020
Identities = 64/295 (21%), Positives = 124/295 (42%)
Query: 111 RKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAA 169
+ S ++FI NL +++ + L F + + S KV D +S GYG++ F+++ A
Sbjct: 106 KTSKTNSLFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGYGYLNFKDKNDA 165
Query: 170 QNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLA-ET--VTDEDLKKI 226
++A K N + ++V + + + ++N+ TNV+ +NL E +T I
Sbjct: 166 ESARKEFNYTVFFGQEVKI-MPSMKNTLFRKNIG---TNVFFSNLPLENPQLTTRSFYLI 221
Query: 227 FGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTN-NDKVWYVGRAQK- 284
+G + S ++ + + GFV F + +A ++K N +K+ K
Sbjct: 222 MIEYGNVLSCLLERRKN-----IGFVYFDNDISARNVIKKYNNQEFFGNKIICGLHFDKE 276
Query: 285 -RAEREADLRAKF-------EQERISRY---EKLKGANLYLKNLDDSINDEKLKELFSEF 333
R E R K E E ++ + + + +KNL E++ + FS
Sbjct: 277 VRTRPEFTKRKKMIGSDIVIEDELLASNNLSDNARSKTILVKNLPSDTTQEEVLDYFSTI 336
Query: 334 GTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRK 388
G I S + Q + F + EE+ +A +N + ++V + K
Sbjct: 337 GPIKSVFISEKQAN-TPHKAFVTYKNEEESKKAQKCLNKTIFKNHTIWVGPGKDK 390
>RGD|620369 [details] [associations]
symbol:Hnrnpm "heterogeneous nuclear ribonucleoprotein M"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;TAS] [GO:0003823 "antigen binding" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005681
"spliceosomal complex" evidence=IEA;ISO] [GO:0016363 "nuclear
matrix" evidence=IEA;ISO] [GO:0019904 "protein domain specific
binding" evidence=ISO] [GO:0042382 "paraspeckles" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:620369 GO:GO:0003823 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0016363
GO:GO:0000398 eggNOG:COG0724 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:U32577
EMBL:BC088317 IPI:IPI00209148 IPI:IPI01016435 RefSeq:NP_001103381.1
RefSeq:NP_446328.2 UniGene:Rn.10156 ProteinModelPortal:Q62826
SMR:Q62826 PhosphoSite:Q62826 PRIDE:Q62826
Ensembl:ENSRNOT00000059985 GeneID:116655 KEGG:rno:116655
UCSC:RGD:620369 NextBio:619427 Genevestigator:Q62826
GermOnline:ENSRNOG00000007921 Uniprot:Q62826
Length = 690
Score = 192 (72.6 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 69/261 (26%), Positives = 118/261 (45%)
Query: 193 RRQERAQQNVSP-KFTNVYVNNLAETVTDEDLKKIFGH-FGTITSAIVMKDSDGKSRCFG 250
R R + +P K ++ N+ V + LK + G +T ++ D++GKSR
Sbjct: 55 RGGNRFEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCA 114
Query: 251 FVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGA 310
V F+ ++ A E LN K GR K E A+ ++ R G+
Sbjct: 115 VVEFKMEESMKKAAEVLN------KHSLSGRPLKVKEDPDGEHARRAMQKAGRL----GS 164
Query: 311 NLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEM 370
+++ NLD + +KLKE+FS G + ++ D+ G S+G G F EA +A++
Sbjct: 165 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMF 224
Query: 371 NGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRAPGGMSPLASGI-PGYHHGAPRLGPQQ 429
NG+++ +P++V + +R + + Q + P G+ + G+ PG G P +
Sbjct: 225 NGQLLFDRPMHVKMDERALPKGDFFPPERPQ-QLPHGLGGIGMGLGPG---GQP-IDANH 279
Query: 430 LYYGQGTPGLMPPQAAGYGFQ 450
L G G L P AG G +
Sbjct: 280 LNKGIGMGNLGP---AGMGME 297
Score = 181 (68.8 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 49/165 (29%), Positives = 84/165 (50%)
Query: 31 YVGDLEQNVNESQLYDLFSQ-VAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL 89
++ ++ +V L DL + V +V V + D +S G A V + + A E L
Sbjct: 73 FITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSR-GCAVVEFKMEESMKKAAEVL 131
Query: 90 NFMPINGKPIRIMYS----HRDPSIRKSG-YGN-VFIKNLDTSIDNKALCDTFAAFGTVL 143
N ++G+P+++ H +++K+G G+ VF+ NLD + K L + F+ G V+
Sbjct: 132 NKHSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVV 191
Query: 144 SCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYV 188
+ D +G+S+G G V FE A AI M NG L+ D+ ++V
Sbjct: 192 RADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 236
Score = 127 (49.8 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
+F++NL K L D F G VL + ++ NG+SKG G V+FE+ E A+ A +M+N
Sbjct: 615 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMN 673
Query: 178 GMLINDKQVYV 188
GM ++ +++ V
Sbjct: 674 GMKLSGREIDV 684
Score = 104 (41.7 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRAL 367
K ++++NL + LK+ F+E G + + ++ +G SKG G F PE A RA
Sbjct: 611 KACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERAC 669
Query: 368 NEMNG-KMIGRK 378
MNG K+ GR+
Sbjct: 670 RMMNGMKLSGRE 681
Score = 89 (36.4 bits), Expect = 8.9e-15, Sum P(2) = 8.9e-15
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 202 VSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAA 261
V+ K ++V NL T + LK F G + A + K +GKS+ G V F+SP+ A
Sbjct: 608 VARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADI-KMENGKSKGCGVVKFESPEVAE 666
Query: 262 AAVEKLNG 269
A +NG
Sbjct: 667 RACRMMNG 674
Score = 64 (27.6 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 17/78 (21%), Positives = 34/78 (43%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+++V +L+ V +L ++FS VV + D+ +S G V + +A A
Sbjct: 165 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSR-GIGTVTFEQSIEAVQAISM 223
Query: 89 LNFMPINGKPIRIMYSHR 106
N + +P+ + R
Sbjct: 224 FNGQLLFDRPMHVKMDER 241
>UNIPROTKB|F1LV13 [details] [associations]
symbol:Hnrpm "Protein Hnrpm" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 GeneTree:ENSGT00410000025635 CTD:4670 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
IPI:IPI01016435 RefSeq:NP_446328.2 UniGene:Rn.10156 GeneID:116655
KEGG:rno:116655 NextBio:619427 PRIDE:F1LV13
Ensembl:ENSRNOT00000011047 Uniprot:F1LV13
Length = 690
Score = 192 (72.6 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 69/261 (26%), Positives = 118/261 (45%)
Query: 193 RRQERAQQNVSP-KFTNVYVNNLAETVTDEDLKKIFGH-FGTITSAIVMKDSDGKSRCFG 250
R R + +P K ++ N+ V + LK + G +T ++ D++GKSR
Sbjct: 55 RGGNRFEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCA 114
Query: 251 FVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGA 310
V F+ ++ A E LN K GR K E A+ ++ R G+
Sbjct: 115 VVEFKMEESMKKAAEVLN------KHSLSGRPLKVKEDPDGEHARRAMQKAGRL----GS 164
Query: 311 NLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEM 370
+++ NLD + +KLKE+FS G + ++ D+ G S+G G F EA +A++
Sbjct: 165 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMF 224
Query: 371 NGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRAPGGMSPLASGI-PGYHHGAPRLGPQQ 429
NG+++ +P++V + +R + + Q + P G+ + G+ PG G P +
Sbjct: 225 NGQLLFDRPMHVKMDERALPKGDFFPPERPQ-QLPHGLGGIGMGLGPG---GQP-IDANH 279
Query: 430 LYYGQGTPGLMPPQAAGYGFQ 450
L G G L P AG G +
Sbjct: 280 LNKGIGMGNLGP---AGMGME 297
Score = 181 (68.8 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 49/165 (29%), Positives = 84/165 (50%)
Query: 31 YVGDLEQNVNESQLYDLFSQ-VAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL 89
++ ++ +V L DL + V +V V + D +S G A V + + A E L
Sbjct: 73 FITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSR-GCAVVEFKMEESMKKAAEVL 131
Query: 90 NFMPINGKPIRIMYS----HRDPSIRKSG-YGN-VFIKNLDTSIDNKALCDTFAAFGTVL 143
N ++G+P+++ H +++K+G G+ VF+ NLD + K L + F+ G V+
Sbjct: 132 NKHSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVV 191
Query: 144 SCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYV 188
+ D +G+S+G G V FE A AI M NG L+ D+ ++V
Sbjct: 192 RADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 236
Score = 127 (49.8 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
+F++NL K L D F G VL + ++ NG+SKG G V+FE+ E A+ A +M+N
Sbjct: 615 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMN 673
Query: 178 GMLINDKQVYV 188
GM ++ +++ V
Sbjct: 674 GMKLSGREIDV 684
Score = 104 (41.7 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRAL 367
K ++++NL + LK+ F+E G + + ++ +G SKG G F PE A RA
Sbjct: 611 KACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERAC 669
Query: 368 NEMNG-KMIGRK 378
MNG K+ GR+
Sbjct: 670 RMMNGMKLSGRE 681
Score = 89 (36.4 bits), Expect = 8.9e-15, Sum P(2) = 8.9e-15
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 202 VSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAA 261
V+ K ++V NL T + LK F G + A + K +GKS+ G V F+SP+ A
Sbjct: 608 VARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADI-KMENGKSKGCGVVKFESPEVAE 666
Query: 262 AAVEKLNG 269
A +NG
Sbjct: 667 RACRMMNG 674
Score = 64 (27.6 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 17/78 (21%), Positives = 34/78 (43%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+++V +L+ V +L ++FS VV + D+ +S G V + +A A
Sbjct: 165 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSR-GIGTVTFEQSIEAVQAISM 223
Query: 89 LNFMPINGKPIRIMYSHR 106
N + +P+ + R
Sbjct: 224 FNGQLLFDRPMHVKMDER 241
>UNIPROTKB|Q62826 [details] [associations]
symbol:Hnrnpm "Heterogeneous nuclear ribonucleoprotein M"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620369 GO:GO:0003823 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0016363 GO:GO:0000398
eggNOG:COG0724 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:U32577
EMBL:BC088317 IPI:IPI00209148 IPI:IPI01016435 RefSeq:NP_001103381.1
RefSeq:NP_446328.2 UniGene:Rn.10156 ProteinModelPortal:Q62826
SMR:Q62826 PhosphoSite:Q62826 PRIDE:Q62826
Ensembl:ENSRNOT00000059985 GeneID:116655 KEGG:rno:116655
UCSC:RGD:620369 NextBio:619427 Genevestigator:Q62826
GermOnline:ENSRNOG00000007921 Uniprot:Q62826
Length = 690
Score = 192 (72.6 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 69/261 (26%), Positives = 118/261 (45%)
Query: 193 RRQERAQQNVSP-KFTNVYVNNLAETVTDEDLKKIFGH-FGTITSAIVMKDSDGKSRCFG 250
R R + +P K ++ N+ V + LK + G +T ++ D++GKSR
Sbjct: 55 RGGNRFEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCA 114
Query: 251 FVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGA 310
V F+ ++ A E LN K GR K E A+ ++ R G+
Sbjct: 115 VVEFKMEESMKKAAEVLN------KHSLSGRPLKVKEDPDGEHARRAMQKAGRL----GS 164
Query: 311 NLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEM 370
+++ NLD + +KLKE+FS G + ++ D+ G S+G G F EA +A++
Sbjct: 165 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMF 224
Query: 371 NGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRAPGGMSPLASGI-PGYHHGAPRLGPQQ 429
NG+++ +P++V + +R + + Q + P G+ + G+ PG G P +
Sbjct: 225 NGQLLFDRPMHVKMDERALPKGDFFPPERPQ-QLPHGLGGIGMGLGPG---GQP-IDANH 279
Query: 430 LYYGQGTPGLMPPQAAGYGFQ 450
L G G L P AG G +
Sbjct: 280 LNKGIGMGNLGP---AGMGME 297
Score = 181 (68.8 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 49/165 (29%), Positives = 84/165 (50%)
Query: 31 YVGDLEQNVNESQLYDLFSQ-VAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL 89
++ ++ +V L DL + V +V V + D +S G A V + + A E L
Sbjct: 73 FITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSR-GCAVVEFKMEESMKKAAEVL 131
Query: 90 NFMPINGKPIRIMYS----HRDPSIRKSG-YGN-VFIKNLDTSIDNKALCDTFAAFGTVL 143
N ++G+P+++ H +++K+G G+ VF+ NLD + K L + F+ G V+
Sbjct: 132 NKHSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVV 191
Query: 144 SCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYV 188
+ D +G+S+G G V FE A AI M NG L+ D+ ++V
Sbjct: 192 RADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 236
Score = 127 (49.8 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
+F++NL K L D F G VL + ++ NG+SKG G V+FE+ E A+ A +M+N
Sbjct: 615 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMN 673
Query: 178 GMLINDKQVYV 188
GM ++ +++ V
Sbjct: 674 GMKLSGREIDV 684
Score = 104 (41.7 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRAL 367
K ++++NL + LK+ F+E G + + ++ +G SKG G F PE A RA
Sbjct: 611 KACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERAC 669
Query: 368 NEMNG-KMIGRK 378
MNG K+ GR+
Sbjct: 670 RMMNGMKLSGRE 681
Score = 89 (36.4 bits), Expect = 8.9e-15, Sum P(2) = 8.9e-15
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 202 VSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAA 261
V+ K ++V NL T + LK F G + A + K +GKS+ G V F+SP+ A
Sbjct: 608 VARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADI-KMENGKSKGCGVVKFESPEVAE 666
Query: 262 AAVEKLNG 269
A +NG
Sbjct: 667 RACRMMNG 674
Score = 64 (27.6 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 17/78 (21%), Positives = 34/78 (43%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+++V +L+ V +L ++FS VV + D+ +S G V + +A A
Sbjct: 165 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSR-GIGTVTFEQSIEAVQAISM 223
Query: 89 LNFMPINGKPIRIMYSHR 106
N + +P+ + R
Sbjct: 224 FNGQLLFDRPMHVKMDER 241
>UNIPROTKB|F1SA50 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0016363 GO:GO:0071013 GO:GO:0000380 GO:GO:0042382
GeneTree:ENSGT00410000025635 OMA:PGIERMA InterPro:IPR024666
PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:FP090904
Ensembl:ENSSSCT00000014856 Uniprot:F1SA50
Length = 704
Score = 191 (72.3 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 71/272 (26%), Positives = 122/272 (44%)
Query: 193 RRQERAQQNVSP-KFTNVYVNNLAETVTDEDLKKIFGH-FGTITSAIVMKDSDGKSRCFG 250
R R + +P K ++ N+ V + LK + G +T ++ D++GKSR
Sbjct: 69 RGGNRFEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCA 128
Query: 251 FVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGA 310
V F+ ++ A E LN K GR K E A+ ++ R G+
Sbjct: 129 VVEFKMEESMKKAAEVLN------KHSLSGRPLKVKEDPDGEHARRAMQKAGRL----GS 178
Query: 311 NLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEM 370
+++ NLD + +KLKE+FS G + ++ D+ G S+G G F EA +A++
Sbjct: 179 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMF 238
Query: 371 NGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRAPGGMSPLASGI-PGYHHGAPRLGPQQ 429
NG+++ +P++V + +R + + Q + P G+ + G+ PG G P +
Sbjct: 239 NGQLLFDRPMHVKMDERALPKGDFFPPERPQ-QLPHGLGGIGMGLGPG---GQP-IDANH 293
Query: 430 LYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGG 461
L G G + P AG G + F + GG
Sbjct: 294 LNKGIGMGNIGP---AGMGMEGIGFGINKMGG 322
Score = 181 (68.8 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 49/165 (29%), Positives = 84/165 (50%)
Query: 31 YVGDLEQNVNESQLYDLFSQ-VAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL 89
++ ++ +V L DL + V +V V + D +S G A V + + A E L
Sbjct: 87 FITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSR-GCAVVEFKMEESMKKAAEVL 145
Query: 90 NFMPINGKPIRIMYS----HRDPSIRKSG-YGN-VFIKNLDTSIDNKALCDTFAAFGTVL 143
N ++G+P+++ H +++K+G G+ VF+ NLD + K L + F+ G V+
Sbjct: 146 NKHSLSGRPLKVKEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVV 205
Query: 144 SCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYV 188
+ D +G+S+G G V FE A AI M NG L+ D+ ++V
Sbjct: 206 RADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 250
Score = 127 (49.8 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177
+F++NL K L D F G VL + ++ NG+SKG G V+FE+ E A+ A +M+N
Sbjct: 629 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMN 687
Query: 178 GMLINDKQVYV 188
GM ++ +++ V
Sbjct: 688 GMKLSGREIDV 698
Score = 104 (41.7 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRAL 367
K ++++NL + LK+ F+E G + + ++ +G SKG G F PE A RA
Sbjct: 625 KACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERAC 683
Query: 368 NEMNG-KMIGRK 378
MNG K+ GR+
Sbjct: 684 RMMNGMKLSGRE 695
Score = 89 (36.4 bits), Expect = 9.5e-15, Sum P(2) = 9.5e-15
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 202 VSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAA 261
V+ K ++V NL T + LK F G + A + K +GKS+ G V F+SP+ A
Sbjct: 622 VARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADI-KMENGKSKGCGVVKFESPEVAE 680
Query: 262 AAVEKLNG 269
A +NG
Sbjct: 681 RACRMMNG 688
Score = 64 (27.6 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 17/78 (21%), Positives = 34/78 (43%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+++V +L+ V +L ++FS VV + D+ +S G V + +A A
Sbjct: 179 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSR-GIGTVTFEQSIEAVQAISM 237
Query: 89 LNFMPINGKPIRIMYSHR 106
N + +P+ + R
Sbjct: 238 FNGQLLFDRPMHVKMDER 255
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 211 (79.3 bits), Expect = 2.8e-16, P = 2.8e-16
Identities = 59/173 (34%), Positives = 83/173 (47%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVEKL 267
VY+ N+ TVT+E L K+ G + VM D G+SR FGF +S + A A VEKL
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 268 NGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLK 327
NG T + V +K DL ++ K +Y+ NL ++ E L+
Sbjct: 138 NGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYK---VYVGNLAKTVTKEMLE 194
Query: 328 ELFSEFGTITSCKVM-VDQHGFSKGSGFAAFSMPEEATRALNEMNGKMI-GRK 378
LFSE G + S KV V S G GF FS E+ A+ +N ++ G+K
Sbjct: 195 NLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQK 247
Score = 173 (66.0 bits), Expect = 6.4e-11, P = 6.4e-11
Identities = 52/175 (29%), Positives = 84/175 (48%)
Query: 107 DPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFEN 165
DPS + V+I N+ ++ N+ L G V +V D +G+S+ +GF ++
Sbjct: 69 DPSSEAAR--RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKS 126
Query: 166 EEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQ-----QNVSPKFTN----VYVNNLAE 216
E A ++ LNG + +++ V + + + Q+ F + VYV NLA+
Sbjct: 127 VEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAK 186
Query: 217 TVTDEDLKKIFGHFGTITSAIVMK-DSDGKSRCFGFVNFQSPDAAAAAVEKLNGT 270
TVT E L+ +F G + SA V + KS FGFV F S + AA+ LN +
Sbjct: 187 TVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNS 241
Score = 156 (60.0 bits), Expect = 9.9e-09, P = 9.9e-09
Identities = 47/181 (25%), Positives = 85/181 (46%)
Query: 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQD 81
PS +Y+G++ + V QL L + V V+V D+ S + + + +D
Sbjct: 70 PSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVED 129
Query: 82 AANAKEALNFMPINGKPIRIMYSHR------DPSIRKSGYG-------NVFIKNLDTSID 128
A E LN + G+ I++ + + D S+ +S V++ NL ++
Sbjct: 130 ANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVT 189
Query: 129 NKALCDTFAAFGTVLSCKVA-IDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVY 187
+ L + F+ G V+S KV+ + +S G+GFV F +EE + AI LN L+ +++
Sbjct: 190 KEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIR 249
Query: 188 V 188
V
Sbjct: 250 V 250
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 174 (66.3 bits), Expect = 5.3e-10, P = 5.3e-10
Identities = 46/166 (27%), Positives = 84/166 (50%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
+L++GDL+ V+E+ L FSQ ++VSV+V R++ GY ++ + + A +
Sbjct: 25 TLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQT 84
Query: 89 LNFMPINGKPIRIMYSHRD-PSIRKSGYG---NVFIKNLDTSIDNKALCDTFAA-FGTVL 143
N + G + + S +K G ++F+ +L + + L +TF + +V
Sbjct: 85 YNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVR 144
Query: 144 SCKVAID-SNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYV 188
KV D S G+SKGYGFV+F E A+ +NG+ + + + +
Sbjct: 145 GAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRI 190
Score = 161 (61.7 bits), Expect = 3.4e-16, Sum P(2) = 3.4e-16
Identities = 45/156 (28%), Positives = 81/156 (51%)
Query: 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKML 176
++I +L +D L F+ G ++S KV + GQ +GYGF++F + AA+ ++
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 177 NGMLINDKQVYVGLFVRRQERAQQ-NVSPKFTNVYVNNLAETVTDEDLKKIFG-HFGTIT 234
NG + ++ L Q+ + P + ++V +LA VTD L++ F H+ ++
Sbjct: 86 NGTQMPGTELTFRLNWASFGSGQKVDAGPDHS-IFVGDLAPDVTDYLLQETFRVHYSSVR 144
Query: 235 SAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNG 269
A V+ D S G+S+ +GFV F A+ ++NG
Sbjct: 145 GAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNG 180
Score = 129 (50.5 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 53/219 (24%), Positives = 91/219 (41%)
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVEKL 267
+++ +L V + L F G + S V+++ G+ +GF+ F S AA ++
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 268 NGTTNNDKVWYVGRAQKRAEREADLR-AKFEQERISRYEKLKGANLYLKNLDDSINDEKL 326
NGT E L A F + + + ++++ +L + D L
Sbjct: 86 NGTQ-----------MPGTELTFRLNWASFGSGQ--KVDAGPDHSIFVGDLAPDVTDYLL 132
Query: 327 KELFS-EFGTITSCKVMVDQH-GFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384
+E F + ++ KV+ D G SKG GF F+ E RA+ EMNG +P+ ++
Sbjct: 133 QETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISA 192
Query: 385 AQRKEERKARLQAQFAQIRAPGGMSPLASGIPGYHHGAP 423
A K + +Q Q+ P A P + AP
Sbjct: 193 ATPK--KNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAP 229
Score = 117 (46.2 bits), Expect = 3.4e-16, Sum P(2) = 3.4e-16
Identities = 50/226 (22%), Positives = 94/226 (41%)
Query: 237 IVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKR----AEREADL 292
+V S G+S+ +GFV F A+ ++NG + + + A + +++
Sbjct: 148 VVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQQYVT 207
Query: 293 RAKFE-----------QERISRYEK-LKGANLYLKNLDDSINDEKLKELFSEFGTITSCK 340
+A + Q ++ E + + + NLD ++ +E+LK+ FS+ G + K
Sbjct: 208 KAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVK 267
Query: 341 VMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFA 400
+ +KG G+ F A A+ M G++IG++ + ++ ++ + QA
Sbjct: 268 IPA-----TKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNPGQDGWVTQADPN 322
Query: 401 QIRAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQAAG 446
Q G G Y +GA + Y G G P P Q G
Sbjct: 323 QWN---GYYGYGQGYDAYAYGATQDPSVYAYGGYGYPQY-PQQGEG 364
WARNING: HSPs involving 1139 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.133 0.382 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 637 581 0.00082 120 3 11 22 0.42 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1389
No. of states in DFA: 603 (64 KB)
Total size of DFA: 286 KB (2149 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 53.48u 0.18s 53.66t Elapsed: 00:00:02
Total cpu time: 53.65u 0.18s 53.83t Elapsed: 00:00:03
Start: Thu May 9 21:28:01 2013 End: Thu May 9 21:28:04 2013
WARNINGS ISSUED: 2