BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006641
(637 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/610 (60%), Positives = 453/610 (74%), Gaps = 14/610 (2%)
Query: 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAAN 84
+ N SLYVGDL+ +VNES L DLF+QVA V ++RVCRD + RS LGYAYVN++NP+DA+
Sbjct: 56 HPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRS-LGYAYVNFANPEDASR 114
Query: 85 AKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS 144
A E+LN+ PI +PIRIM S+RDPS R SG GNVFIKNLD SIDNKAL +TF++FGT+LS
Sbjct: 115 AMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILS 174
Query: 145 CKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERA--QQNV 202
CKVA+D G+SKGYGFVQFE EE AQ AI LNGML+NDKQV+VG FVRRQ+RA +
Sbjct: 175 CKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGA 234
Query: 203 SPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAA 262
P FTNVYV NL + +TD++LKK FG +G I+SA+VMKD G SR FGFVNF SP+AAA
Sbjct: 235 VPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAV 294
Query: 263 AVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
AVEK+NG + + V YVGRAQK+++RE +LR KFEQERISR+EKL+G+NLYLKNLDDS+N
Sbjct: 295 AVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVN 354
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYV 382
DEKLKE+FSE+G +TSCKVM++ G S+G GF A+S PEEA A+ EMNGKMIGRKPLYV
Sbjct: 355 DEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYV 414
Query: 383 AVAQRKEERKARLQAQFAQIRAPGGMSPLASGIPGYHH---GAPRLGPQQ-LYYGQGTPG 438
A+AQRKEER+A LQ+ F QIR+PG MSP+ S + G+HH G P GP ++ G G
Sbjct: 415 ALAQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQG 474
Query: 439 LMPPQAAGYGFQQQVFPGLRPGG--PNYIMPYHLQRQVHPGQRTGVRRSGNTHQMQQPQF 496
L+P Q GYG+Q Q PG+RPG PN++MP+ LQRQ PG R G RR N Q Q Q
Sbjct: 475 LVPSQPMGYGYQVQFMPGMRPGAGPPNFMMPFPLQRQTQPGPRVGFRRGANNMQQQFQQQ 534
Query: 497 MRNSNQGIRYL---DNARNGTDQSVV-SMVPVPFEVSGMPAT-PVETPRPVPVPISTLTS 551
R++ N RNG + S ++P+P S P + +P P+ IS L S
Sbjct: 535 QMLQQNASRFMGGAGNRRNGMEASAPQGIIPLPLNASANSHNAPQRSHKPTPLTISKLAS 594
Query: 552 ALASASPDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTKVA 611
LA ASPD RMLG+ LYPLVE EP +A+KVTGMLLEMDQ E+LHL+ESPEALK KV+
Sbjct: 595 DLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEALKAKVS 654
Query: 612 EAMAVLQEAA 621
EA+ VL+ +A
Sbjct: 655 EALDVLRRSA 664
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/654 (58%), Positives = 473/654 (72%), Gaps = 39/654 (5%)
Query: 3 ATGAAAATA-----AVTSATTAAVPSG-------------YGNVSLYVGDLEQNVNESQL 44
ATG A AT + T+ T+ VP + N SLY GDL+ V E+ L
Sbjct: 6 ATGVAPATMVDQVPSPTAQTSVQVPVSIPLPSPVVVADQTHPNSSLYAGDLDPKVTEAHL 65
Query: 45 YDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYS 104
+DLF VA VVSVRVCRDQ++RS LGYAY+N+SNP DA A EALN+ P+ +PIRIM S
Sbjct: 66 FDLFKHVANVVSVRVCRDQNRRS-LGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLS 124
Query: 105 HRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFE 164
+RDPS R SG GN+FIKNLD SIDNKAL +TF++FGT+LSCKVA+D G+SKGYGFVQFE
Sbjct: 125 NRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFE 184
Query: 165 NEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERA--QQNVSPKFTNVYVNNLAETVTDED 222
EE+AQ AI LNGML+NDKQV+VG F+RRQERA + +P+FTNVYV NL + + +++
Sbjct: 185 KEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDE 244
Query: 223 LKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRA 282
L+K FG FG I+SA+VM+D G SRCFGFVNF+ +AAA+AVEK+NG + D V YVGRA
Sbjct: 245 LRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRA 304
Query: 283 QKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVM 342
QK++ERE +LR KFEQERI+R+EK +GANLYLKNLDDS++DEKLKE+FSE+G +TS KVM
Sbjct: 305 QKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVM 364
Query: 343 VDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQI 402
++ G S+G GF A+S PEEA RAL+EMNGKMIGRKPLY+A+AQRKE+R+A LQA F+QI
Sbjct: 365 LNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQI 424
Query: 403 RAPGGMSPLASGIPGYHH---GAPRLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRP 459
RAPG MS G+HH G PQ +Y GQ ++P Q GYGFQ Q PG+RP
Sbjct: 425 RAPGPMS-------GFHHPPGGPMPGPPQHMYVGQNGASMVPSQPIGYGFQPQFMPGMRP 477
Query: 460 G-GP-NYIMPYHLQRQVHPGQRTGVRRSGNT---HQMQQPQFMRNSNQGIRYLD---NAR 511
G GP N+I+PY LQRQ G R G RR H QQ RN + G+RY++ N R
Sbjct: 478 GSGPGNFIVPYPLQRQPQTGPRMGFRRGATNVQQHIQQQQLMHRNPSPGMRYMNGASNGR 537
Query: 512 NGTDQSVVSMVPVPFEVSGMPATPVETPRPVPVPISTLTSALASASPDDRTRMLGEQLYP 571
NG D SV + P + A+ + + +PIS LTS+LASASP DRTRMLGEQLYP
Sbjct: 538 NGMDSSVPQGILPPIIPLPIDASSISHQKAPLLPISKLTSSLASASPADRTRMLGEQLYP 597
Query: 572 LVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTKVAEAMAVLQEAAARSD 625
LVE EP+H +KVTGMLLEMDQ E+LHL+ESPEALK+KV+EA+ VL+ + +D
Sbjct: 598 LVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLRLSVDPTD 651
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/635 (56%), Positives = 453/635 (71%), Gaps = 30/635 (4%)
Query: 8 AATAAVTSA---TTAAVPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQS 64
+TAAVTSA + A + +GN SLYVGDL+ NV +SQL+D F Q+ VV+VRVCRD
Sbjct: 13 GSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLV 72
Query: 65 KRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLD 124
R SLGY YVN++NPQDAA A + LN++P+ GKPIR+MYSHRDPS+R+SG GN+FIKNLD
Sbjct: 73 TRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLD 132
Query: 125 TSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDK 184
SID+KAL DTF++FG ++SCKVA+DS+GQSKGYGFVQ+ NEE+AQ AI+ LNGML+NDK
Sbjct: 133 ESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDK 192
Query: 185 QVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDG 244
QVYVG F+RRQER KFTNVYV NLAE+ TD+DLK FG +G ITSA+VMKD +G
Sbjct: 193 QVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEG 252
Query: 245 KSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRY 304
KS+ FGFVNF++ D AA AVE LNG +DK WYVGRAQK++ERE +LR ++EQ
Sbjct: 253 KSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAA 312
Query: 305 EKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEAT 364
+K + +NLY+KNLD SI+DEKLKE+FS FGT+TS KVM D +G SKGSGF AF+ PEEAT
Sbjct: 313 DKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEAT 372
Query: 365 RALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRAPGGMSP-LASGIPGYHHGAP 423
A+++++GKMI KPLYVA+AQRKE+R+ RLQAQF+Q+R P M P + +P Y G P
Sbjct: 373 EAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVR-PVAMQPSVGPRMPVYPPGGP 431
Query: 424 RLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGG---PNYIMPYHLQRQVHPGQRT 480
+G QQ++YGQ P ++PPQ GYG+QQQ+ PG+RPGG P++ MP +Q PG
Sbjct: 432 GIG-QQMFYGQAPPAMIPPQ-PGYGYQQQLVPGMRPGGGPVPSFFMPMVQPQQQRPGGGR 489
Query: 481 GVRRSGNTHQMQQPQFMRNSNQG--IRYLDNARNGTDQSVVSMVPVPFEVSGMPATPVET 538
++ Q + +G RY R G+ VP P +
Sbjct: 490 RPGGIQHSQQQNPMMQQQMHPRGRMFRY-PQGRGGSGD-----VP-----------PYDM 532
Query: 539 PRPVPVPISTLTSALASASPDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLH 598
+P+ I L S L++A+P+ + MLGE LYPLVE +E A+KVTGMLLEMDQTEVLH
Sbjct: 533 GNNMPLTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLH 592
Query: 599 LIESPEALKTKVAEAMAVLQEAAARSDVNEKLGSL 633
L+ESPEALK KVAEAM VL+ AA E+L SL
Sbjct: 593 LLESPEALKAKVAEAMDVLRSVAA-GGATEQLASL 626
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 505 bits (1301), Expect = e-142, Method: Compositional matrix adjust.
Identities = 295/648 (45%), Positives = 393/648 (60%), Gaps = 64/648 (9%)
Query: 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAAN 84
Y SLYVGDL +V E+ LY+ FS ++S+RVCRD R SLGYAYVN+ P DA
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 85 AKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS 144
A + +NF I GKP+RIM+S RDPS+RKSG GN+FIKNLD SIDNKAL DTF+AFG +LS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 145 CKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQ--NV 202
CKV D NG SKGYGFV FE +EAA+ AI+ +NGML+ND++V+VG F R+ER +
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR 186
Query: 203 SPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAA 262
+ +FTNVY+ N E + DE LK++FG FG S VM D GKS+ FGFV+F+ + A
Sbjct: 187 AKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 263 AVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
AV+++NG N K YVGRAQK+ ER+ +L+ KFEQ + R + +G NLY+KNLDD I+
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYV 382
DE+L++ FS FGTITS KVM++ G SKG GF FS PEEAT+A+ EMNG+++ KPLYV
Sbjct: 307 DERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 383 AVAQRKEERKARLQAQFAQ----IRA-------------PGGMSPLASGIPGYHHGAPRL 425
A+AQRKEER+A L Q+ Q +RA P G + IP + A
Sbjct: 366 ALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGY--FMAAIPQTQNRAAYY 423
Query: 426 GPQQLYYGQGTPGLMPPQAAGYGFQQQVFPG-LRPGGPNYIMPYHLQRQVH---PGQRTG 481
P Q+ + +P A + FQ PG +RP P P+ R P +
Sbjct: 424 PPSQIAQLRPSPRWTAQGARPHPFQN--MPGAIRPAAPR--PPFSTMRPASSQVPRVMST 479
Query: 482 VRRSGNTHQMQQPQ----------FMRNSNQGIRYLDNARNGTD----QSVVSMVPVPFE 527
R + + Q P+ +R Q +Y RN Q V+M
Sbjct: 480 QRVANTSTQTMGPRPAAAAAAATPAVRTVPQ-YKYAAGVRNPQQHLNAQPQVTM------ 532
Query: 528 VSGMPATPVETPRPVPVPISTLTSALASASPDDRTRMLGEQLYPLVENIEPVHASKVTGM 587
PA V+ P+ S LASA P ++ +MLGE+L+PL++ + P A K+TGM
Sbjct: 533 --QQPAVHVQGQEPL------TASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGM 584
Query: 588 LLEMDQTEVLHLIESPEALKTKVAEAMAVLQ----EAAARSDVNEKLG 631
LLE+D +E+LH++ESPE+L++KV EA+AVLQ + AA+ VN G
Sbjct: 585 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNSATG 632
Score = 180 bits (457), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 169/298 (56%), Gaps = 16/298 (5%)
Query: 107 DPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFEN 165
+PS ++++ +L + L + F+ G +LS +V D +S GY +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 166 EEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKK 225
A+ A+ +N +I K V + R + V N+++ NL +++ ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG----NIFIKNLDKSIDNKALYD 117
Query: 226 IFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKR 285
F FG I S V+ D +G S+ +GFV+F++ +AA A+EK+NG ND+ +VGR + R
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 286 AEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ 345
EREA+L A+ ++ N+Y+KN + ++DE+LKELF +FG S KVM D+
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 346 HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
G SKG GF +F E+A +A++EMNGK + K +YV AQ+K ER+ L+ +F Q++
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 505 bits (1301), Expect = e-142, Method: Compositional matrix adjust.
Identities = 295/648 (45%), Positives = 392/648 (60%), Gaps = 64/648 (9%)
Query: 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAAN 84
Y SLYVGDL +V E+ LY+ FS ++S+RVCRD R SLGYAYVN+ P DA
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 85 AKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS 144
A + +NF I GKP+RIM+S RDPS+RKSG GN+FIKNLD SIDNKAL DTF+AFG +LS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 145 CKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQ--NV 202
CKV D NG SKGYGFV FE +EAA+ AI+ +NGML+ND++V+VG F R+ER +
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR 186
Query: 203 SPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAA 262
+ +FTNVY+ N E + DE LK +FG FG S VM D GKS+ FGFV+F+ + A
Sbjct: 187 AKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 263 AVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
AV+++NG N K YVGRAQK+ ER+ +L+ KFEQ + R + +G NLY+KNLDD I+
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYV 382
DE+L++ FS FGTITS KVM++ G SKG GF FS PEEAT+A+ EMNG+++ KPLYV
Sbjct: 307 DERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 383 AVAQRKEERKARLQAQFAQ----IRA-------------PGGMSPLASGIPGYHHGAPRL 425
A+AQRKEER+A L Q+ Q +RA P G + IP + A
Sbjct: 366 ALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGY--FMAAIPQTQNRAAYY 423
Query: 426 GPQQLYYGQGTPGLMPPQAAGYGFQQQVFPG-LRPGGPNYIMPYHLQRQVH---PGQRTG 481
P Q+ + +P A + FQ PG +RP P P+ R P +
Sbjct: 424 PPSQIAQLRPSPRWTAQGARPHPFQN--MPGAIRPAAPR--PPFSTMRPASSQVPRVMST 479
Query: 482 VRRSGNTHQMQQPQ----------FMRNSNQGIRYLDNARNGTD----QSVVSMVPVPFE 527
R + + Q P+ +R Q +Y RN Q V+M
Sbjct: 480 QRVANTSTQTMGPRPAAAAAAATPAVRTVPQ-YKYAAGVRNPQQHLNAQPQVTM------ 532
Query: 528 VSGMPATPVETPRPVPVPISTLTSALASASPDDRTRMLGEQLYPLVENIEPVHASKVTGM 587
PA V+ P+ S LASA P ++ +MLGE+L+PL++ + P A K+TGM
Sbjct: 533 --QQPAVHVQGQEPL------TASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGM 584
Query: 588 LLEMDQTEVLHLIESPEALKTKVAEAMAVLQ----EAAARSDVNEKLG 631
LLE+D +E+LH++ESPE+L++KV EA+AVLQ + AA+ VN G
Sbjct: 585 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNSATG 632
Score = 179 bits (453), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 169/298 (56%), Gaps = 16/298 (5%)
Query: 107 DPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFEN 165
+PS ++++ +L + L + F+ G +LS +V D +S GY +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 166 EEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKK 225
A+ A+ +N +I K V + R + V N+++ NL +++ ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG----NIFIKNLDKSIDNKALYD 117
Query: 226 IFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKR 285
F FG I S V+ D +G S+ +GFV+F++ +AA A+EK+NG ND+ +VGR + R
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 286 AEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ 345
EREA+L A+ ++ N+Y+KN + ++DE+LK+LF +FG S KVM D+
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 346 HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
G SKG GF +F E+A +A++EMNGK + K +YV AQ+K ER+ L+ +F Q++
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 505 bits (1301), Expect = e-142, Method: Compositional matrix adjust.
Identities = 295/648 (45%), Positives = 392/648 (60%), Gaps = 64/648 (9%)
Query: 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAAN 84
Y SLYVGDL +V E+ LY+ FS ++S+RVCRD R SLGYAYVN+ P DA
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 85 AKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS 144
A + +NF I GKP+RIM+S RDPS+RKSG GN+FIKNLD SIDNKAL DTF+AFG +LS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 145 CKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQ--NV 202
CKV D NG SKGYGFV FE +EAA+ AI+ +NGML+ND++V+VG F R+ER +
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR 186
Query: 203 SPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAA 262
+ +FTNVY+ N E + DE LK +FG FG S VM D GKS+ FGFV+F+ + A
Sbjct: 187 AKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 263 AVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
AV+++NG N K YVGRAQK+ ER+ +L+ KFEQ + R + +G NLY+KNLDD I+
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYV 382
DE+L++ FS FGTITS KVM++ G SKG GF FS PEEAT+A+ EMNG+++ KPLYV
Sbjct: 307 DERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 383 AVAQRKEERKARLQAQFAQ----IRA-------------PGGMSPLASGIPGYHHGAPRL 425
A+AQRKEER+A L Q+ Q +RA P G + IP + A
Sbjct: 366 ALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGY--FMAAIPQTQNRAAYY 423
Query: 426 GPQQLYYGQGTPGLMPPQAAGYGFQQQVFPG-LRPGGPNYIMPYHLQRQVH---PGQRTG 481
P Q+ + +P A + FQ PG +RP P P+ R P +
Sbjct: 424 PPSQIAQLRPSPRWTAQGARPHPFQN--MPGAIRPAAPR--PPFSTMRPASSQVPRVMST 479
Query: 482 VRRSGNTHQMQQPQ----------FMRNSNQGIRYLDNARNGTD----QSVVSMVPVPFE 527
R + + Q P+ +R Q +Y RN Q V+M
Sbjct: 480 QRVANTSTQTMGPRPAAAAAAATPAVRTVPQ-YKYAAGVRNPQQHLNAQPQVTM------ 532
Query: 528 VSGMPATPVETPRPVPVPISTLTSALASASPDDRTRMLGEQLYPLVENIEPVHASKVTGM 587
PA V+ P+ S LASA P ++ +MLGE+L+PL++ + P A K+TGM
Sbjct: 533 --QQPAVHVQGQEPL------TASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGM 584
Query: 588 LLEMDQTEVLHLIESPEALKTKVAEAMAVLQ----EAAARSDVNEKLG 631
LLE+D +E+LH++ESPE+L++KV EA+AVLQ + AA+ VN G
Sbjct: 585 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNSATG 632
Score = 179 bits (453), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 169/298 (56%), Gaps = 16/298 (5%)
Query: 107 DPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFEN 165
+PS ++++ +L + L + F+ G +LS +V D +S GY +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 166 EEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKK 225
A+ A+ +N +I K V + R + V N+++ NL +++ ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG----NIFIKNLDKSIDNKALYD 117
Query: 226 IFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKR 285
F FG I S V+ D +G S+ +GFV+F++ +AA A+EK+NG ND+ +VGR + R
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 286 AEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ 345
EREA+L A+ ++ N+Y+KN + ++DE+LK+LF +FG S KVM D+
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 346 HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
G SKG GF +F E+A +A++EMNGK + K +YV AQ+K ER+ L+ +F Q++
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 505 bits (1300), Expect = e-142, Method: Compositional matrix adjust.
Identities = 295/648 (45%), Positives = 393/648 (60%), Gaps = 64/648 (9%)
Query: 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAAN 84
Y SLYVGDL +V E+ LY+ FS ++S+RVCRD R SLGYAYVN+ P DA
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 85 AKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS 144
A + +NF I GKP+RIM+S RDPS+RKSG GN+FIKNLD SIDNKAL DTF+AFG +LS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 145 CKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQ--NV 202
CKV D NG SKGYGFV FE +EAA+ AI+ +NGML+ND++V+VG F R+ER +
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR 186
Query: 203 SPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAA 262
+ +FTNVY+ N E + DE LK++FG FG S VM D GKS+ FGFV+F+ + A
Sbjct: 187 AKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 263 AVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
AV+++NG N K YVGRAQK+ ER+ +L+ KFEQ + R + +G NLY+KNLDD I+
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYV 382
DE+L++ FS FGTITS KVM++ G SKG GF FS PEEAT+A+ EMNG+++ KPLYV
Sbjct: 307 DERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 383 AVAQRKEERKARLQAQFAQ----IRA-------------PGGMSPLASGIPGYHHGAPRL 425
A+AQRKEER+A L Q+ Q +RA P G + IP + A
Sbjct: 366 ALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGY--FMAAIPQTQNRAAYY 423
Query: 426 GPQQLYYGQGTPGLMPPQAAGYGFQQQVFPG-LRPGGPNYIMPYHLQRQVH---PGQRTG 481
P Q+ + +P A + FQ PG +RP P P+ R P +
Sbjct: 424 PPSQIAQLRPSPRWTAQGARPHPFQN--MPGAIRPAAPR--PPFSTMRPASSQVPRVMST 479
Query: 482 VRRSGNTHQMQQPQF----------MRNSNQGIRYLDNARNGTD----QSVVSMVPVPFE 527
R + + Q P+ +R Q +Y RN Q V+M
Sbjct: 480 QRVANTSTQTMGPRPAAAATAATPAVRTVPQ-YKYAAGVRNPQQHLNAQPQVTM------ 532
Query: 528 VSGMPATPVETPRPVPVPISTLTSALASASPDDRTRMLGEQLYPLVENIEPVHASKVTGM 587
PA V+ P+ S LASA P ++ +MLGE+L+PL++ + P A K+TGM
Sbjct: 533 --QQPAVHVQGQEPL------TASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGM 584
Query: 588 LLEMDQTEVLHLIESPEALKTKVAEAMAVLQ----EAAARSDVNEKLG 631
LLE+D +E+LH++ESPE+L++KV EA+AVLQ + AA+ VN G
Sbjct: 585 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNSATG 632
Score = 180 bits (456), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 169/298 (56%), Gaps = 16/298 (5%)
Query: 107 DPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFEN 165
+PS ++++ +L + L + F+ G +LS +V D +S GY +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 166 EEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKK 225
A+ A+ +N +I K V + R + V N+++ NL +++ ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG----NIFIKNLDKSIDNKALYD 117
Query: 226 IFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKR 285
F FG I S V+ D +G S+ +GFV+F++ +AA A+EK+NG ND+ +VGR + R
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 286 AEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ 345
EREA+L A+ ++ N+Y+KN + ++DE+LKELF +FG S KVM D+
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 346 HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
G SKG GF +F E+A +A++EMNGK + K +YV AQ+K ER+ L+ +F Q++
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 503 bits (1295), Expect = e-141, Method: Compositional matrix adjust.
Identities = 294/648 (45%), Positives = 391/648 (60%), Gaps = 64/648 (9%)
Query: 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAAN 84
Y SLYVGDL + E+ LY+ FS ++S+RVCRD R SLGYAYVN+ P DA
Sbjct: 8 YPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 85 AKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS 144
A + +NF I GKP+RIM+S RDPS+RKSG GN+FIKNLD SIDNKAL DTF+AFG +LS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 145 CKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQ--NV 202
CKV D NG SKGYGFV FE +EAA+ AI+ +NGML+ND++V+VG F R+ER +
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR 186
Query: 203 SPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAA 262
+ +FTNVY+ N E + DE LK +FG FG S VM D GKS+ FGFV+F+ + A
Sbjct: 187 AKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 263 AVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
AV+++NG N K YVGRAQK+ ER+ +L+ KFEQ + R + +G NLY+KNLDD I+
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYV 382
DE+L++ FS FGTITS KVM++ G SKG GF FS PEEAT+A+ EMNG+++ KPLYV
Sbjct: 307 DERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 383 AVAQRKEERKARLQAQFAQ----IRA-------------PGGMSPLASGIPGYHHGAPRL 425
A+AQRKEER+A L Q+ Q +RA P G + IP + A
Sbjct: 366 ALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGY--FMAAIPQTQNRAAYY 423
Query: 426 GPQQLYYGQGTPGLMPPQAAGYGFQQQVFPG-LRPGGPNYIMPYHLQRQVH---PGQRTG 481
P Q+ + +P A + FQ PG +RP P P+ R P +
Sbjct: 424 PPSQIAQLRPSPRWTAQGARPHPFQN--MPGAIRPAAPR--PPFSTMRPASSQVPRVMST 479
Query: 482 VRRSGNTHQMQQPQ----------FMRNSNQGIRYLDNARNGTD----QSVVSMVPVPFE 527
R + + Q P+ +R Q +Y RN Q V+M
Sbjct: 480 QRVANTSTQTMGPRPAAAAAAATPAVRTVPQ-YKYAAGVRNPQQHLNAQPQVTM------ 532
Query: 528 VSGMPATPVETPRPVPVPISTLTSALASASPDDRTRMLGEQLYPLVENIEPVHASKVTGM 587
PA V+ P+ S LASA P ++ +MLGE+L+PL++ + P A K+TGM
Sbjct: 533 --QQPAVHVQGQEPL------TASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGM 584
Query: 588 LLEMDQTEVLHLIESPEALKTKVAEAMAVLQ----EAAARSDVNEKLG 631
LLE+D +E+LH++ESPE+L++KV EA+AVLQ + AA+ VN G
Sbjct: 585 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNSATG 632
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 500 bits (1288), Expect = e-140, Method: Compositional matrix adjust.
Identities = 296/638 (46%), Positives = 395/638 (61%), Gaps = 53/638 (8%)
Query: 20 AVPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNP 79
A +GY SLYVGDL +V E+ LY+ FS ++S+RVCRD + R SLGYAY+N+ P
Sbjct: 3 ATGAGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQP 62
Query: 80 QDAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAF 139
DA A + +NF I G+PIRIM+S RDP +RKSG GNVFIKNLD SIDNKAL DTF+AF
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAF 122
Query: 140 GTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQ 199
G +LSCKV D +G S+GYGFV FE +EAA AI+ +NGML+ND++V+VG F R+ER
Sbjct: 123 GNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRREREL 181
Query: 200 QNVSP--KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSP 257
+ + +FTNVY+ N E + D+ L++IF FG S VM D G+SR FGFVN+ +
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNH 241
Query: 258 DAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFE---QERISRYEKLKGANLYL 314
+ A AV ++NG N ++ YVGRAQKR ER+ +L+ KFE QERI+RY+ G NLY+
Sbjct: 242 EEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQ---GVNLYV 298
Query: 315 KNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKM 374
KNLDD I+D++L++ FS +GTITS KVM + G SKG GF FS PEEAT+A+ EMNG++
Sbjct: 299 KNLDDGIDDDRLRKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 375 IGRKPLYVAVAQRKEERKARLQAQFAQ----IRA-PGGMSPLASGIPGYHHGAPRLGPQQ 429
+ KPLYVA+AQRKEERKA L Q+ Q +RA PG + Y A P +
Sbjct: 358 VSTKPLYVALAQRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPAMPQPPNR 417
Query: 430 LYYGQGTPGLMPP--QAAGYGFQQQVFPGLRPGGPNYIMPYHLQRQVHPGQRTGVRRSGN 487
+Y +P + P QA + Q RP P Y P L R V P R S N
Sbjct: 418 TFY---SPNPVAPVRQAPQWTSHQS-----RP--PQYQPPAPLMRAVPPR-----RMSSN 462
Query: 488 THQMQQ---------PQFMRNSNQGIRYLDNARNGTDQSVVSMVP-VPFEVSGMPATPVE 537
M+Q P R +N G + AR + S++ +P + + P+
Sbjct: 463 ISTMKQASTQVPRVAPHSQRVANIGTQ-TAGARAQVNPSIMRTMPHYKYSCAVRNVQPIG 521
Query: 538 T---------PRPVPVPISTLT-SALASASPDDRTRMLGEQLYPLVENIEPVHASKVTGM 587
T P + LT S+LASA P ++ +MLGE+LYPL+ + P A K+TGM
Sbjct: 522 TNTHLQQVMEPAVLMQGQEPLTASSLASAPPQEQKQMLGERLYPLIHEMHPTLAGKITGM 581
Query: 588 LLEMDQTEVLHLIESPEALKTKVAEAMAVLQEAAARSD 625
LLE+D +E+LH++ESPE+L +KV EA+AVLQ A+ +
Sbjct: 582 LLEIDNSELLHMLESPESLHSKVEEAVAVLQAHQAKEN 619
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 499 bits (1286), Expect = e-140, Method: Compositional matrix adjust.
Identities = 285/641 (44%), Positives = 390/641 (60%), Gaps = 48/641 (7%)
Query: 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAAN 84
Y SLYVGDL +V E+ LY+ FS ++S+RVCRD R SLGYAYVN+ P DA
Sbjct: 8 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 85 AKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS 144
A + +NF I GKP+RIM+S RDPS+RKSG GN+FIKNLD SIDNKAL DTF+AFG +LS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 145 CKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQ--NV 202
CKV D NG SKGYGFV FE +EAA+ AI +NGML+ND++V+VG F R+ER +
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGAR 186
Query: 203 SPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAA 262
+ +FTNVY+ N E + DE LK+ FG +G S VM D GKSR FGFV+F+ + A
Sbjct: 187 AKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQK 246
Query: 263 AVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
AV+ +NG N K +VGRAQK+ ER+ +L+ KFEQ + R + +G NLY+KNLDD I+
Sbjct: 247 AVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYV 382
DE+L++ F+ FG+ITS KVM++ G SKG GF FS PEEAT+A+ EMNG+++ KPLYV
Sbjct: 307 DERLRKEFTPFGSITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 383 AVAQRKEERKARLQAQFAQ----IRAPGGM---------SPLASGIPGYHHGAPRLGPQQ 429
A+AQRKEER+A L Q+ Q +R P + S + IP + A P Q
Sbjct: 366 ALAQRKEERQAHLTNQYMQRMASVRVPNPVINPYQPPPSSYFMAAIPPAQNRAAYYPPGQ 425
Query: 430 LYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGP-----NYIMPYHLQRQVHPGQRTGVRR 484
+ + +P A + FQ +RP P + + P +V QR
Sbjct: 426 IAQLRPSPRWTAQGARPHPFQNMAG-AIRPSAPRPPTFSTMRPTSQVPRVMSAQRV---- 480
Query: 485 SGNTHQMQQPQ----------FMRNSNQGIRYLDNARNGTDQSVVSMVPVPFEVSGMPAT 534
+ + Q P+ +R Q +Y RN T Q + + V + PA
Sbjct: 481 ANTSTQTMGPRPTTAAAAATSAVRTVPQ-YKYAAGVRN-TQQHLNTQPQVAMQ---QPAV 535
Query: 535 PVETPRPVPVPISTLTSALASASPDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQT 594
V+ P+ S LA+A P ++ +MLGE+L+PL++ + P A K+TGMLLE+D +
Sbjct: 536 HVQGQEPL------TASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNS 589
Query: 595 EVLHLIESPEALKTKVAEAMAVLQEAAARSDVNEKLGSLAV 635
E+LH++ESPE+L++KV EA+AVLQ A+ + + + V
Sbjct: 590 ELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKVVSATGV 630
Score = 175 bits (443), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 168/298 (56%), Gaps = 16/298 (5%)
Query: 107 DPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFEN 165
+PS ++++ +L + L + F+ G +LS +V D +S GY +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 166 EEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKK 225
A+ A+ +N +I K V + R + V N+++ NL +++ ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG----NIFIKNLDKSIDNKALYD 117
Query: 226 IFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKR 285
F FG I S V+ D +G S+ +GFV+F++ +AA A++K+NG ND+ +VGR + R
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 286 AEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ 345
EREA+L A+ ++ N+Y+KN + ++DE+LKE F ++G S KVM D
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDD 226
Query: 346 HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
HG S+G GF +F E+A +A+++MNGK + K ++V AQ+K ER+ L+ +F Q++
Sbjct: 227 HGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMK 284
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 498 bits (1283), Expect = e-140, Method: Compositional matrix adjust.
Identities = 287/646 (44%), Positives = 395/646 (61%), Gaps = 58/646 (8%)
Query: 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAAN 84
Y SLYVGDL Q+V E+ LY+ FS ++S+RVCRD R SLGYAYVN+ P DA
Sbjct: 8 YPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 85 AKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS 144
A + +NF I G+P+RIM+S RDPS+RKSG GN+FIKNLD SIDNKAL DTF+AFG +LS
Sbjct: 68 ALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 145 CKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQ--NV 202
CKV D NG SKGYGFV FE +EAA+ AI +NGML+ND++V+VG F R+ER +
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGAR 186
Query: 203 SPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAA 262
+ +FTNVY+ N + + DE LK++FG +G S VM D +GKS+ FGFV+F+ + A
Sbjct: 187 AKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQK 246
Query: 263 AVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
AV+++NG N K +VGRAQK+ ER+ +L+ KFEQ + R + +G NLY+KNLDD I+
Sbjct: 247 AVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYV 382
DE+L++ F FGTITS KVM++ G SKG GF FS PEEAT+A+ EMNG+++ KPLYV
Sbjct: 307 DERLRKEFLPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 383 AVAQRKEERKARLQAQFAQ----IRAPGGM---------SPLASGIPGYHHGAPRLGPQQ 429
A+AQRKEER+A L Q+ Q +R P + S + IP + A P Q
Sbjct: 366 ALAQRKEERQAHLTNQYMQRMASVRVPNPVINPYQPPPSSYFMAAIPPAQNRAAYYPPGQ 425
Query: 430 LYYGQGTPGLMPPQAAGYGFQQQVFPG-LRPGGP-----NYIMPYHLQ-RQVHPGQR--- 479
+ + +P A + FQ PG +RP P + + P Q +V QR
Sbjct: 426 IAQLRPSPRWTAQGARPHPFQN--MPGAIRPTAPRPPTFSTMRPASNQVPRVMSAQRVAN 483
Query: 480 TGVRRSGNTHQMQQ----------PQFMRNSNQGIRYLDNARNGTDQSVVSMVPVPFEVS 529
T + G PQ+ + G+R N ++ Q V+M
Sbjct: 484 TSTQTMGPRPTTAAAAAASAVRAVPQYKYAA--GVR---NQQHLNTQPQVAM-------- 530
Query: 530 GMPATPVETPRPVPVPISTLTSALASASPDDRTRMLGEQLYPLVENIEPVHASKVTGMLL 589
PA V+ P+ S LA+A P ++ +MLGE+L+PL++ + P A K+TGMLL
Sbjct: 531 QQPAVHVQGQEPL------TASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLL 584
Query: 590 EMDQTEVLHLIESPEALKTKVAEAMAVLQEAAARSDVNEKLGSLAV 635
E+D +E+LH++ESPE+L++KV EA+AVLQ A+ + + + V
Sbjct: 585 EIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKVVNATGV 630
Score = 177 bits (448), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 100/298 (33%), Positives = 169/298 (56%), Gaps = 16/298 (5%)
Query: 107 DPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFEN 165
+PS ++++ +L + L + F+ G +LS +V D +S GY +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 166 EEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKK 225
A+ A+ +N +I + V + R + V N+++ NL +++ ++ L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVG----NIFIKNLDKSIDNKALYD 117
Query: 226 IFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKR 285
F FG I S V+ D +G S+ +GFV+F++ +AA A++K+NG ND+ +VGR + R
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 286 AEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ 345
EREA+L A+ ++ N+Y+KN D +NDE+LKE+F ++G S KVM D
Sbjct: 177 KEREAELGARAKE----------FTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD 226
Query: 346 HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
+G SKG GF +F E+A +A++EMNGK + K ++V AQ+K ER+ L+ +F Q++
Sbjct: 227 NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMK 284
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 488 bits (1256), Expect = e-137, Method: Compositional matrix adjust.
Identities = 290/637 (45%), Positives = 386/637 (60%), Gaps = 51/637 (8%)
Query: 20 AVPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNP 79
A +GY SLY+GDL +V E+ LY+ FS ++S+RVCRD + R SL YAY+N+ P
Sbjct: 3 ATGAGYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQP 62
Query: 80 QDAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAF 139
DA A + +NF I G+PIRIM+S RDP +RKSG GNVFIKNLD SIDNKAL DTF+AF
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAF 122
Query: 140 GTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQ 199
G +LSCKV D +G S+GYGFV FE EAA AI+ +NGML+ND++V+VG F R+ER
Sbjct: 123 GNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRREREL 181
Query: 200 QNVSP--KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSP 257
+ + +FTNVY+ N E + D+ L++IF FG S VM D G+SR FGFVN+ +
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNH 241
Query: 258 DAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFE---QERISRYEKLKGANLYL 314
+ A AV ++NG N ++ YVGRAQKR ER+++L+ KFE QERI+RY+ G NLY+
Sbjct: 242 EEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQ---GVNLYV 298
Query: 315 KNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKM 374
KNLDD I+D++L++ F +GTITS KVM + G SKG GF FS PEEAT+A+ EMNG++
Sbjct: 299 KNLDDGIDDDRLRKEFLPYGTITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 375 IGRKPLYVAVAQRKEERKARLQAQFAQ----IRA-PGGMSPLASGIPGYHHGAPRLGPQQ 429
+ KPLYVA+AQRKEERKA L Q+ Q +RA PG + Y A P +
Sbjct: 358 VSTKPLYVALAQRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLSAMPQPPNR 417
Query: 430 LYYGQG--TPGLMPPQAAGYGFQQQVFPGLRPGGPNYIMPYHLQRQVHPGQRTGVRRSGN 487
+Y P PQ A + RP P Y P L R V P R S N
Sbjct: 418 TFYSPNPVAPVRPAPQWASHQS--------RP--PQYQPPTPLMRAVQPR-----RMSSN 462
Query: 488 THQMQQP--QFMRNSNQGIRYLD------NARNGTDQSVVSMVP----------VPFEVS 529
M+Q Q R + R + AR + S++ +P V VS
Sbjct: 463 ISTMKQASTQVPRVAQHSQRVANIGTQTAGARAQVNPSMMRTMPHYKYSCGVRNVQPIVS 522
Query: 530 GMPATPVETPRPVPVPISTLT-SALASASPDDRTRMLGEQLYPLVENIEPVHASKVTGML 588
V P + LT S LA A P ++ +MLGE++YP++ + P A K+TGML
Sbjct: 523 STHLQQVMEPAVLMQGQEPLTASLLAGAPPQEQKQMLGERIYPVIHEMHPTLAGKITGML 582
Query: 589 LEMDQTEVLHLIESPEALKTKVAEAMAVLQEAAARSD 625
LE+D +E+LH++ESPE+L +KV EA+AVLQ A+ +
Sbjct: 583 LEIDNSELLHMLESPESLHSKVEEAVAVLQAHQAKEN 619
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 484 bits (1246), Expect = e-136, Method: Compositional matrix adjust.
Identities = 287/640 (44%), Positives = 385/640 (60%), Gaps = 71/640 (11%)
Query: 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAAN 84
Y SLY+GDL +V E+ LY+ FS ++S+RVCRD + R SLGYAY+N+ P DA
Sbjct: 8 YPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAER 67
Query: 85 AKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS 144
A + +NF I G+PIRIM+S RDP +RKSG GNVFIKNLD SIDNKAL DTF+AFG +LS
Sbjct: 68 ALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILS 127
Query: 145 CKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSP 204
CKV D G S+GYGFV FE +EAA AI+ +NGML+ND++V+VG F R+ER + +
Sbjct: 128 CKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAK 186
Query: 205 --KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAA 262
+FTNVY+ N E + D+ LK+IF FG S VM D+ G+SR FGFVN+ + + A
Sbjct: 187 VMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQK 246
Query: 263 AVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFE---QERISRYEKLKGANLYLKNLDD 319
AV ++NG N ++ YVGRAQKR ER+ +L+ KFE QERI+RY+ G NLY+KNLDD
Sbjct: 247 AVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQ---GVNLYVKNLDD 303
Query: 320 SINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKP 379
I+D++L++ FS +GTITS KVM + G SKG GF FS PEEAT+A+ EMNG+++ KP
Sbjct: 304 GIDDDRLRKEFSPYGTITSTKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKP 362
Query: 380 LYVAVAQRKEERKARLQAQFAQIRAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGL 439
LYVA+AQRKEERKA L Q+ Q A +PG P LG Q P +
Sbjct: 363 LYVALAQRKEERKAILTNQYMQRLA------TMRAMPG-----PLLGSFQQPANYFLPTM 411
Query: 440 MPPQAAGYGFQQQVFPGLRPG---------GPNYIMPYHLQRQVHPGQRTGVRRSGNTHQ 490
P + V P +RP P Y P L R V P R N
Sbjct: 412 PQPSNRAFYSPNPVAP-VRPAPQWASHQSRPPQYQPPAPLMRAVPPR-----RMHSNIST 465
Query: 491 MQQP---------QFMRNSNQGIRYLDNARNGTDQSVVSMVPVPFEVSGM---------- 531
M+Q Q R +N G + AR + S++ +P G+
Sbjct: 466 MKQASTQVPRVPLQSQRVANIGTQ-TAGARAQVNASIMRAMPHYKYSCGVRNVQPIGSSA 524
Query: 532 -------PATPVETPRPVPVPISTLTSALASASP-DDRTRMLGEQLYPLVENIEPVHASK 583
PA ++ P LT++L +A+P ++ ++LGE++YPL+ + P A K
Sbjct: 525 HLQQVLEPAVLMQGQEP-------LTASLLAAAPLQEQKQILGERIYPLIHEMHPTLAGK 577
Query: 584 VTGMLLEMDQTEVLHLIESPEALKTKVAEAMAVLQEAAAR 623
+TGMLLE+D +E+LH++ESPE+L +KV EA+AVLQ A+
Sbjct: 578 ITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQAHQAK 617
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 484 bits (1246), Expect = e-135, Method: Compositional matrix adjust.
Identities = 283/647 (43%), Positives = 369/647 (57%), Gaps = 81/647 (12%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
SLYVGDL Q+VNES L+D FS V+S+RVCRD R SLGYAYVN+ P DA A +
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
+NF + KPIRIM+S RDPS+R+SG GNVFIKNLD +IDNKA+ DTF+AFG +LSCKVA
Sbjct: 63 MNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVA 122
Query: 149 IDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQ--NVSPKF 206
D G SKGYGFV FE EEAA +I +NGML+N K+VYVG F+ R+ER ++ + F
Sbjct: 123 TDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEK 266
TNVYV N E DE LK+ F +G ITS VM DGKS+ FGFV F++ +AA AAV+
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQA 242
Query: 267 LNGTTNND-KVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEK 325
LNG + K YV RAQK+AER+ +L+ KFE+ + R+E + G NLY+KNLDD+I+D++
Sbjct: 243 LNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDR 302
Query: 326 LKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385
L+ FS +G ITS KVM D+ G SKG GF F+ EAT A+ E+NG+++G KPLYVA+A
Sbjct: 303 LRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALA 362
Query: 386 QRKEERKARLQA------------QFAQIRAPGGMSPL------------ASGIPGYHHG 421
QRKEERKA L + Q QI P S S +
Sbjct: 363 QRKEERKAHLASQYMRHMTGMRMQQLGQIYQPNAASGFFVPTLPSNQRFFGSQVATQMRN 422
Query: 422 APRLGPQ-----------------------------QLYYGQGTPGLMPPQAAGYGFQQQ 452
PR PQ Q PQ G
Sbjct: 423 TPRWVPQVRPPAAIQGVQAGAAAAGGFQGTAGAVPTQFRSAAAGARGAQPQVQGTHAAAA 482
Query: 453 VFPGLRPGGPNYIMPYHLQRQVHPG-QRTGVRRSGNTHQMQQPQFMRNSNQGIRYLDNAR 511
+R G I Q+ P Q G + +G Q R SN +Y N R
Sbjct: 483 AANNMRNTGARAITG---QQTAAPNMQIPGAQIAGGAQQ-------RTSN--YKYTSNMR 530
Query: 512 NGTDQSVVSMVPVPFEVSGMPATPVETPRPVPVPISTLTSALASASPDDRTRMLGEQLYP 571
N + P+P ++ G + + + S LA+A P ++ ++LGE+LYP
Sbjct: 531 NPPVPQLHQTQPIPQQLQGKNSEKL------------IASLLANAKPQEQKQILGERLYP 578
Query: 572 LVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTKVAEAMAVLQ 618
++E++ A K+TGMLLE++ +E+LH+IE EALK KV EA+AVLQ
Sbjct: 579 MIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQ 625
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 310 ANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALN 368
A+LY+ +L +N+ L + FS G + S +V D S G + F P +A RAL+
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 369 EMNGKMIGRKPLYVAVAQR 387
MN ++ KP+ + +QR
Sbjct: 62 TMNFDLVRNKPIRIMWSQR 80
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 482 bits (1240), Expect = e-135, Method: Compositional matrix adjust.
Identities = 269/608 (44%), Positives = 379/608 (62%), Gaps = 24/608 (3%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
SGY SLYVGDL +V E+ LY+ FS ++S+RVCRD + R SLGYAY+N+ P DA
Sbjct: 6 SGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 83 ANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTV 142
A + +NF + G+PIRIM+S RDP +RKSG GN+FIKNL+ SIDNKAL DTF+ FG +
Sbjct: 66 ERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNI 125
Query: 143 LSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQ-- 200
LSCKVA D +G S+G+GFV FE EAAQ AI +NGML+ND++V+VG F R+ER +
Sbjct: 126 LSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELG 184
Query: 201 NVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAA 260
+ +FTN+YV NL V ++ L+ +F FG + S VM+D+ G SRCFGFVNF+ + A
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEA 244
Query: 261 AAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDS 320
AV +NG + ++ Y GRAQKR ER+ +L+ +FEQ + R + +G NLY+KNLDDS
Sbjct: 245 QKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDS 304
Query: 321 INDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPL 380
I+D+KL++ FS +G ITS KVM + G SKG GF FS PEEAT+A+ EMNG+++G KPL
Sbjct: 305 IDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
Query: 381 YVAVAQRKEERKARLQAQFAQIRAPGGMSPLASGIPG--------YHHGAPRLGPQQLYY 432
YVA+AQRKEERKA L Q+ Q + M L++ + G + P+ Q YY
Sbjct: 364 YVALAQRKEERKAILTNQYMQRLS--TMRTLSNPLLGSFQQPSSYFLPAMPQPPAQAAYY 421
Query: 433 GQGTPGLMPPQAAGYGFQQQVFPGLRPGGPNYIMPYHLQRQVHPGQRTGVRRSGNTHQMQ 492
G G + P Q A Q P ++ + + P + VR++
Sbjct: 422 GCGP--VTPTQPAPRWTSQPPRPSC-----ASMVRPPVVPRRPPAHISSVRQASTQVPRT 474
Query: 493 QPQFMRNSNQGIRYLDNARNGTDQSVVSMVPVPFEVSGMPATPVETPRPVPVP-ISTLTS 551
P R +N G + + G ++P + V+ P V +P LT+
Sbjct: 475 VPHTQRVANIGTQTTGPSGVGCCTPGRPLLPCKCSSAAHSTYRVQEP-AVHIPGQEPLTA 533
Query: 552 ALASASP-DDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTKV 610
++ +A+P ++ +M+GE+LYPL+ ++ A K+TGMLLE+D +E+L ++ESPE+L K+
Sbjct: 534 SMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKI 593
Query: 611 AEAMAVLQ 618
EA+AVLQ
Sbjct: 594 DEAVAVLQ 601
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 481 bits (1239), Expect = e-135, Method: Compositional matrix adjust.
Identities = 277/612 (45%), Positives = 369/612 (60%), Gaps = 32/612 (5%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ SLYVG+L+ +V E+ L+++F+ + V S+RVCRD R SLGYAYVNY N D A
Sbjct: 45 SASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 104
Query: 87 EALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCK 146
E LN+ I G+ RIM+S RDP++RK+G GN+FIKNLD SIDNKAL DTFAAFG +LSCK
Sbjct: 105 EHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCK 164
Query: 147 VAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQ--QNVSP 204
V D NG+S+G+ FV + EAA AIK +NGML+NDK+VYVG V ++ER + +
Sbjct: 165 VGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRA 224
Query: 205 KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAV 264
+FTNVY+ N+ VTD + + + FG S + +D G S+ FGFVN+++ ++A AV
Sbjct: 225 QFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAV 284
Query: 265 EKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDE 324
++LN N K Y GRAQ ++EREA+L+ E++R+ K G NLY+KNLDD +D+
Sbjct: 285 DELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDD 344
Query: 325 KLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384
+L+ F FGTITS KVM D G S+G GF +S P+EAT+A++EMNGKMIG KPLYVA+
Sbjct: 345 RLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVAL 404
Query: 385 AQRKEERKARLQAQFAQIRAPGGMSPLASGIPGY--HHGAPRLG-PQQLYYGQGTPGLMP 441
AQRK+ R+ L++Q AQ RA M +G PG + G P G P YGQ PG+ P
Sbjct: 405 AQRKDVRRQALESQIAQ-RAQQRMQ-YGAGFPGMQGYMGQPMYGYPPMPGYGQPMPGMPP 462
Query: 442 PQAAGYGF------QQQVFPGLRPGG---PNYIMPYHLQRQV-HPGQRTGVRRSGNTHQM 491
+ G+ Q P P G P + Y + QV +PG R G
Sbjct: 463 VRGPMMGYPGAPQNMMQSRPRFNPNGQPLPGGVPAYGMPPQVPYPGAPGYPVRPGGARIP 522
Query: 492 QQPQFMRNSNQGIRYLDNARNGTDQSVVSMVPVPF----EVSGMPATPVETPRPVPVPIS 547
P N+N RNG V + +P MPA P E P P
Sbjct: 523 AAP----NAN-------GPRNGGPSPVGAPQGLPAGSIPRGGQMPARPHEQAAPAPQAGR 571
Query: 548 TLTSALASASPDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALK 607
+LA A+P ++ +MLGE LYPL+ +P A K+TGMLLEMD E+LHL+ES AL+
Sbjct: 572 LDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQ 631
Query: 608 TKVAEAMAVLQE 619
KV EA+ VL E
Sbjct: 632 EKVDEALRVLAE 643
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 481 bits (1239), Expect = e-135, Method: Compositional matrix adjust.
Identities = 277/612 (45%), Positives = 369/612 (60%), Gaps = 32/612 (5%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ SLYVG+L+ +V E+ L+++F+ + V S+RVCRD R SLGYAYVNY N D A
Sbjct: 45 SASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 104
Query: 87 EALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCK 146
E LN+ I G+ RIM+S RDP++RK+G GN+FIKNLD SIDNKAL DTFAAFG +LSCK
Sbjct: 105 EHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCK 164
Query: 147 VAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQ--QNVSP 204
V D NG+S+G+ FV + EAA AIK +NGML+NDK+VYVG V ++ER + +
Sbjct: 165 VGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRA 224
Query: 205 KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAV 264
+FTNVY+ N+ VTD + + + FG S + +D G S+ FGFVN+++ ++A AV
Sbjct: 225 QFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAV 284
Query: 265 EKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDE 324
++LN N K Y GRAQ ++EREA+L+ E++R+ K G NLY+KNLDD +D+
Sbjct: 285 DELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDD 344
Query: 325 KLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384
+L+ F FGTITS KVM D G S+G GF +S P+EAT+A++EMNGKMIG KPLYVA+
Sbjct: 345 RLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVAL 404
Query: 385 AQRKEERKARLQAQFAQIRAPGGMSPLASGIPGY--HHGAPRLG-PQQLYYGQGTPGLMP 441
AQRK+ R+ L++Q AQ RA M +G PG + G P G P YGQ PG+ P
Sbjct: 405 AQRKDVRRQALESQIAQ-RAQQRMQ-YGAGFPGMQGYMGQPMYGYPPMPGYGQPMPGMPP 462
Query: 442 PQAAGYGF------QQQVFPGLRPGG---PNYIMPYHLQRQV-HPGQRTGVRRSGNTHQM 491
+ G+ Q P P G P + Y + QV +PG R G
Sbjct: 463 VRGPMMGYPGAPQNMMQSRPRFNPNGQPLPGGVPAYGMPPQVPYPGAPGYPVRPGGARIP 522
Query: 492 QQPQFMRNSNQGIRYLDNARNGTDQSVVSMVPVPF----EVSGMPATPVETPRPVPVPIS 547
P N+N RNG V + +P MPA P E P P
Sbjct: 523 AAP----NAN-------GPRNGGPSPVGAPQGLPAGSIPRGGQMPARPHEQAAPAPQAGR 571
Query: 548 TLTSALASASPDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALK 607
+LA A+P ++ +MLGE LYPL+ +P A K+TGMLLEMD E+LHL+ES AL+
Sbjct: 572 LDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQ 631
Query: 608 TKVAEAMAVLQE 619
KV EA+ VL E
Sbjct: 632 EKVDEALRVLAE 643
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 478 bits (1231), Expect = e-134, Method: Compositional matrix adjust.
Identities = 279/642 (43%), Positives = 386/642 (60%), Gaps = 59/642 (9%)
Query: 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAAN 84
Y SLYVGDL +V E+ LY+ FS ++S+R+CRD S YAYVN+ + +DA +
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 85 AKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS 144
A + +NF I GKP+RIM+S RDPS+RKSG GN+F+KNLD SI+NKAL DT +AFG +LS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 145 CKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQ--NV 202
C V D NG SKGYGFV FE EAA+ AIK +NGML+N ++V+VG F R+ER +
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 203 SPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAA 262
+ +F NVY+ N E + DE LK +FG FG S VM D GKS+ FGFV+F+ + A
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 263 AVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQ---ERISRYEKLKGANLYLKNLDD 319
AV+++NG N K YVGRAQK+ ER+ +L+ FEQ +RI+RY+ + NLY+KNLDD
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVV---NLYVKNLDD 303
Query: 320 SINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKP 379
I+DE+L++ FS FGTITS KVM++ G SKG GF FS PEEAT+A+ EMNG+++ KP
Sbjct: 304 GIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 362
Query: 380 LYVAVAQRKEERKARLQAQFAQ----IRA-PGGMSP----LASGIPGYHHGAPRLGPQQL 430
LYVA+AQRKEER+A L ++ Q +RA P +P + +P + A P Q+
Sbjct: 363 LYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQNHAAYYPPSQI 422
Query: 431 YYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGPNYIMPYHLQRQVH---PGQRTGVRRSGN 487
+ +P A + FQ + +RPG P +P+ R P + R +
Sbjct: 423 ARLRPSPRWTAQGARPHPFQNKP-SAIRPGAPR--VPFSTMRPASSQVPRVMSTQRVANT 479
Query: 488 THQMQQPQFMRNSNQ----------------GIRYLDNARNGTDQSVVSMVPVPFEVSGM 531
+ Q P+ + G+R RN Q V+M + V G
Sbjct: 480 STQTVGPRPAAAAAAAATPAVRTVPRYKYAAGVRNPQQHRNAQPQ--VTMQQLAVHVQGQ 537
Query: 532 PATPVETPRPVPVPISTLT-SALASASPDDRTRMLGEQLYPLVENIEPVHASKVTGMLLE 590
TLT S LASA P + +MLGE+L+PL++ + P A K+TGMLLE
Sbjct: 538 ---------------ETLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLE 582
Query: 591 MDQTEVLHLIESPEALKTKVAEAMAVLQEAAARSDVNEKLGS 632
+D +E+L+++ESPE+L++KV EA+AVLQ A+ + + S
Sbjct: 583 IDNSELLYMLESPESLRSKVDEAVAVLQAHQAKEATQKAVNS 624
Score = 166 bits (421), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 170/299 (56%), Gaps = 18/299 (6%)
Query: 107 DPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAID--SNGQSKGYGFVQFE 164
+PS ++++ +L + L + F+ G +LS ++ D ++G S Y +V F+
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSG-SSNYAYVNFQ 60
Query: 165 NEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLK 224
+ + A++A+ +N +I K V + R + V N++V NL +++ ++ L
Sbjct: 61 HTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG----NIFVKNLDKSINNKALY 116
Query: 225 KIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQK 284
FG I S V+ D +G S+ +GFV+F++ +AA A++K+NG N + +VG+ +
Sbjct: 117 DTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKS 175
Query: 285 RAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD 344
R EREA+L A+ ++ N+Y+KN + ++DE+LK+LF +FG S KVM D
Sbjct: 176 RKEREAELGARAKE----------FPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 345 QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
+ G SKG GF +F E+A +A++EMNGK + K +YV AQ+K ER+ L+ F Q++
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 475 bits (1222), Expect = e-133, Method: Compositional matrix adjust.
Identities = 275/620 (44%), Positives = 372/620 (60%), Gaps = 46/620 (7%)
Query: 10 TAAVTSATTAAVPSGYG--NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRS 67
T+ T+A++ A PSG + SLYVG+L+ +V E+ L++LF+ + V S+RVCRD R
Sbjct: 60 TSTPTNASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRR 119
Query: 68 SLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSI 127
SLGYAYVN+ N +D A + LN+ I G+P RIM+S RDPS+RK G GNVFIKNLD +I
Sbjct: 120 SLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAI 179
Query: 128 DNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVY 187
DNKAL DTF+AFG +LSCKVA+D G +KGYGFV F++ E+A AI+ +NGML+NDK+VY
Sbjct: 180 DNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVY 239
Query: 188 VGLFVRRQERAQ--QNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGK 245
VG V R+ER + + FTNVY+ NL +T+++ +FG FG ITS ++KD + K
Sbjct: 240 VGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDK 299
Query: 246 SRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYE 305
R FGFVN+ + + A AV++LN K YVGRAQK+ ERE +LR ++EQ ++ +
Sbjct: 300 PRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMN 359
Query: 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATR 365
K +G NL++KNL D ++DE+LK FS FGTITS K+M D+ G SKG GF ++ PEEA +
Sbjct: 360 KYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANK 419
Query: 366 ALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFA---QIRAPGGMSPLASGIPGYHHGA 422
A+ EMN +M+ KPLYVA+AQRKE R+++L+AQ Q R ++ A+GIP +GA
Sbjct: 420 AVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFRLQQQVA-AAAGIPAVQYGA 478
Query: 423 PRLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGPNYI-MPYHLQRQVHPGQRTG 481
GP L YG PG P AA G + PG P Y MP G
Sbjct: 479 --TGP--LIYG---PGGYPIPAAVNGRGMPMVPGHNGPMPMYPGMPTQFPAGGPAPGYPG 531
Query: 482 VRRSGNTHQMQQPQFMRNSNQGIRYLDNARNGTDQSVVSMVPV--PFEVSGMPATPVETP 539
+ G +P M S VP P E +PA P
Sbjct: 532 MNARGPVPAQGRPMMMPGS---------------------VPSAGPAEAEAVPAVP---- 566
Query: 540 RPVPVPISTLTSALASASPDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHL 599
+P + LA+ + R ++LGE LYP V E + K+TGMLLEM +E+L L
Sbjct: 567 ---GMPERFTAADLAAVPEESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLEL 623
Query: 600 IESPEALKTKVAEAMAVLQE 619
+E AL +V EA+ VLQE
Sbjct: 624 LEDDSALNERVNEAIGVLQE 643
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 471 bits (1213), Expect = e-132, Method: Compositional matrix adjust.
Identities = 286/682 (41%), Positives = 389/682 (57%), Gaps = 96/682 (14%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ SLYVG+L+ +V E+ LY+LFS + QV S+RVCRD R SLGYAYVNY+N D A
Sbjct: 47 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 106
Query: 87 EALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCK 146
E LN+ I GKP RIM+S RDP++RK+G GNVFIKNLD +IDNKAL DTFAAFG +LSCK
Sbjct: 107 EDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCK 166
Query: 147 VAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQ--QNVSP 204
VA D G SKGYGFV +E EAA NAIK +NGML+NDK+V+VG + +++R + +
Sbjct: 167 VAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKA 226
Query: 205 KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAV 264
FTNVY+ NL + +++E+ +++F FG ITSA + +D +GKSR FGFVN+ + D+A AAV
Sbjct: 227 NFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAV 286
Query: 265 EKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDE 324
+++N + YVGRAQK+ ERE +LR ++E R+ + K +G NLY+KNL D I+DE
Sbjct: 287 DEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDE 346
Query: 325 KLKELFSEFGTITSCKVMVDQH-------------------------------------- 346
KL+E+F+ +GTITS KVM D +
Sbjct: 347 KLREMFAPYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKESGDD 406
Query: 347 -------------GFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKA 393
G SKG GF FS P+EA++A+ EMN +MI KPLYVA+AQRK+ R++
Sbjct: 407 QDKENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRKDVRRS 466
Query: 394 RLQAQF-AQIRAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMP-PQAAGYGFQQ 451
+L+A A+ + A+G+P P + P ++YG G G +P Q G F
Sbjct: 467 QLEASIQARNTIRQQQAAAAAGMP-----QPYMQP-AVFYGPGQQGFIPGGQRGGLPFAP 520
Query: 452 QV-----FPGLRPG---------------GPNYIMPYHLQRQVHPGQR--TGVRRSGNTH 489
Q PG RPG GPN +P + + + G G+
Sbjct: 521 QPGMMMGVPGGRPGQYPGPFPGQQGGRGMGPNQQIPPNFAQGIPMGAMGPGGIPNGMGYP 580
Query: 490 QMQQPQFMRNSN-----QGIRYLDNARNGTDQSVVSMVPVPFEV------SGMPATPVET 538
QM Q QF R + G+ R VPV ++ G A P
Sbjct: 581 QMGQVQFGRGAGGRGQVPGMPMGQGMRGPGYGQGRGGVPVQGQMRPGQGGRGQNAQPAAG 640
Query: 539 PRPVPVPISTLTS-ALASASPDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVL 597
R P + LT+ +LA+A + +MLGE LYP ++ +P A K+TGMLLEMD TE+L
Sbjct: 641 -RGEEAPAAGLTAQSLAAAPAPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELL 699
Query: 598 HLIESPEALKTKVAEAMAVLQE 619
L+E EAL+ KV EA++V E
Sbjct: 700 SLLEDDEALRAKVDEALSVYDE 721
Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 98/350 (28%), Positives = 166/350 (47%), Gaps = 72/350 (20%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
+G GNV ++ +L+ ++ L+D F+ ++S +V +D+ S GY +V+Y + A
Sbjct: 133 TGQGNV--FIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSK-GYGFVHYETAEAA 189
Query: 83 ANAKEALNFMPINGKPIRIMY--SHRDPSIR----KSGYGNVFIKNLDTSIDNKALCDTF 136
NA + +N M +N K + + + S +D + K+ + NV+IKNLD I + F
Sbjct: 190 NNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMF 249
Query: 137 AAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQE 196
FG + S ++ D G+S+G+GFV + ++AQ A+ +N + +++YVG ++ E
Sbjct: 250 EKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKHE 309
Query: 197 RAQQ----------NVSPKF--TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSD- 243
R ++ + K+ N+YV NL + + DE L+++F +GTITSA VM+D++
Sbjct: 310 REEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLREMFAPYGTITSAKVMRDTNI 369
Query: 244 --------------------------------------------------GKSRCFGFVN 253
GKS+ FGFV
Sbjct: 370 ERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKESGDDQDKENKKSDKKVLGKSKGFGFVC 429
Query: 254 FQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISR 303
F SPD A+ AV ++N N K YV AQ++ R + L A + R
Sbjct: 430 FSSPDEASKAVTEMNQRMINGKPLYVALAQRKDVRRSQLEASIQARNTIR 479
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 466 bits (1198), Expect = e-130, Method: Compositional matrix adjust.
Identities = 302/712 (42%), Positives = 396/712 (55%), Gaps = 103/712 (14%)
Query: 2 EATGAAAATA----AVTSATTAAVPSGY--GNVSLYVGDLEQNVNESQLYDLFSQVAQVV 55
EAT AAA +A AV SA+ + PS + SLYVG+L+ +V E+ LY+LFS + QV
Sbjct: 20 EATNAAATSAPEVTAVESASPSTTPSASQPHSASLYVGELDPSVTEAMLYELFSSIGQVA 79
Query: 56 SVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGY 115
S+RVCRD R SLGYAYVNY+N D A E LN+ I GKP RIM+S RDP++RK+G
Sbjct: 80 SIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQ 139
Query: 116 GNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKM 175
GNVFIKNLD +IDNKAL DTFAAFG +LSCKVA D G SKGYGFV +E EAA NAIK
Sbjct: 140 GNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKH 199
Query: 176 LNGMLINDKQVYVGLFVRRQERAQ--QNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI 233
+NGML+NDK+V+VG + +++R + + FTNVY+ N+ + VTDE+ +K+F FG I
Sbjct: 200 VNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEI 259
Query: 234 TSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLR 293
TSA + +D +GKSR FGFVNF + D+A AAV+++N + YVGRAQK+ ERE +LR
Sbjct: 260 TSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELR 319
Query: 294 AKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-------- 345
++E R+ + K +G NLY+KNL D ++DEKL+ELFS FGTITS KVM D
Sbjct: 320 KQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTTGETSE 379
Query: 346 ---------------------------------------HGFSKGSGFAAFSMPEEATRA 366
G SKG GF FS P+EA++A
Sbjct: 380 SEKEKEKESNKENEKEGEEKTEEKPKESEEEPKKTEKKILGKSKGFGFVCFSSPDEASKA 439
Query: 367 LNEMNGKMIGRKPLYVAVAQRKEERKARLQAQF-AQIRAPGGMSPLASGIPGYHHGAPRL 425
+ EMN +M+ KPLYVA+AQRK+ R+++L+A A+ + A+G+P P +
Sbjct: 440 VTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMP-----QPYM 494
Query: 426 GPQQLYYGQGTPGLMPP-QAAGYGFQQQV-----FPGLRPG---------------GPNY 464
P ++YG G G +P Q G F Q PG RPG GPN
Sbjct: 495 QP-AVFYGPGQQGFIPAGQRGGMPFAPQPGMVMGIPGGRPGQYPGPFPGQQGGRGMGPNQ 553
Query: 465 IMPYHLQ-----RQVHPGQRTGVRRSGNTHQMQQPQFMRNS-----------NQGIRYLD 508
+P + Q PG G+ QM Q QF R + QGIR
Sbjct: 554 QIPPNFQGIPMGAMQGPG---GIPNGMGYPQMAQVQFGRGAGGRGQVPGMPMGQGIRGPG 610
Query: 509 NARNGTDQSVVSMVPVPFEVSGMPATPVETPR-PVPVPISTLTSALASASPDDRTRMLGE 567
+ V A P R VP L++ P + +MLGE
Sbjct: 611 YGQGRGGAPVQGGPRPQGGRGQPAAAPPAAGREEVPATGGLTAQTLSAVPPPQQKQMLGE 670
Query: 568 QLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTKVAEAMAVLQE 619
LYP ++ +P A K+TGMLLEMD E+L L+E EAL+ KV EA++V E
Sbjct: 671 ALYPKIQAQQPELAGKITGMLLEMDNNELLGLLEDEEALRAKVDEALSVYDE 722
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 465 bits (1197), Expect = e-130, Method: Compositional matrix adjust.
Identities = 302/710 (42%), Positives = 396/710 (55%), Gaps = 101/710 (14%)
Query: 2 EATGAAAATA----AVTSATTAAVPSGY--GNVSLYVGDLEQNVNESQLYDLFSQVAQVV 55
EAT AA +A AV SA+ +A PS + SLYVG+L+ +V E+ LY+LFS + QV
Sbjct: 20 EATNPAATSAPEVTAVESASPSATPSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVA 79
Query: 56 SVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGY 115
S+RVCRD R SLGYAYVNY+N D A E LN+ I GKP RIM+S RDP++RK+G
Sbjct: 80 SIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQ 139
Query: 116 GNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKM 175
GNVFIKNLD +IDNKAL DTFAAFG +LSCKVA D G SKGYGFV +E EAA NAIK
Sbjct: 140 GNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKH 199
Query: 176 LNGMLINDKQVYVGLFVRRQERAQ--QNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI 233
+NGML+NDK+V+VG + +++R + + FTNVY+ N+ + VTDE+ +K+F FG I
Sbjct: 200 VNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEI 259
Query: 234 TSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLR 293
TSA + +D +GKSR FGFVNF + D+A AAV+++N + YVGRAQK+ ERE +LR
Sbjct: 260 TSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELR 319
Query: 294 AKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-------- 345
++E R+ + K +G NLY+KNL D ++DEKL+ELFS FGTITS KVM D
Sbjct: 320 KQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTAGETSE 379
Query: 346 -------------------------------------HGFSKGSGFAAFSMPEEATRALN 368
G SKG GF FS P+EA++A+
Sbjct: 380 SEKEKESNKENEKEGEEKTEEKPKESEEEAKKTEKKILGKSKGFGFVCFSSPDEASKAVT 439
Query: 369 EMNGKMIGRKPLYVAVAQRKEERKARLQAQF-AQIRAPGGMSPLASGIPGYHHGAPRLGP 427
EMN +M+ KPLYVA+AQRK+ R+++L+A A+ + A+G+P P + P
Sbjct: 440 EMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMP-----QPYMQP 494
Query: 428 QQLYYGQGTPGLMPP-QAAGYGFQQQV-----FPGLRPG---------------GPNYIM 466
++YG G G +P Q G F Q PG RPG GPN +
Sbjct: 495 -AVFYGPGQQGFIPAGQRGGMPFAPQPGMVMGIPGGRPGQYPGPFPGQQGGRGMGPNQQI 553
Query: 467 PYHLQ-----RQVHPGQRTGVRRSGNTHQMQQPQFMRNS-----------NQGIRYLDNA 510
P + Q PG G+ QM Q QF R + QG+R
Sbjct: 554 PPNFQGIPMGAMQGPG---GIPNGMGYPQMAQVQFGRGAGGRGQVPGMPMGQGMRGPGYG 610
Query: 511 RNGTDQSVVSMVPVPFEVSGMPATPVETPR-PVPVPISTLTSALASASPDDRTRMLGEQL 569
+ V A P R VP L + P + +MLGE L
Sbjct: 611 QGRGGAPVQGGPRPQGGRGQPAAAPPAAGREEVPATGGLTAQTLNAVPPPQQKQMLGEAL 670
Query: 570 YPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTKVAEAMAVLQE 619
YP ++ +P A K+TGMLLEMD TE+L L+E EAL+ KV EA++V E
Sbjct: 671 YPKIQAQQPELAGKITGMLLEMDNTELLGLLEDEEALRAKVDEALSVYDE 720
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 461 bits (1186), Expect = e-129, Method: Compositional matrix adjust.
Identities = 292/723 (40%), Positives = 394/723 (54%), Gaps = 123/723 (17%)
Query: 2 EATGAAAATAAVTSATTAAVPSGYGN------VSLYVGDLEQNVNESQLYDLFSQVAQVV 55
EAT AAA +A +A ++ P+ N SLYVG+L+ +V E+ LY+LFS + QV
Sbjct: 19 EATNAAATSAPEVTAVESSSPTSPNNNNQPHSASLYVGELDPSVTEAMLYELFSSIGQVA 78
Query: 56 SVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGY 115
S+RVCRD R SLGYAYVNY+N D A E LN+ I GKP RIM+S RDP++RK+G
Sbjct: 79 SIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQ 138
Query: 116 GNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKM 175
GNVFIKNLD++IDNKAL DTFAAFG +LSCKVA D G SKGYGFV +E EAA NAIK
Sbjct: 139 GNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKH 198
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQ--NVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTI 233
+NGML+NDK+V+VG + +++R + + FTN+Y+ N+ VT+E+ +KIF FG I
Sbjct: 199 VNGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEI 258
Query: 234 TSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLR 293
TSA + +D +GKSR FGFVN+ + ++A AAV++++ + YVGRAQK+ ERE +LR
Sbjct: 259 TSATLSRDPEGKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEELR 318
Query: 294 AKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVM----------- 342
++E R+ + K +G NLY+KNL D ++DEKL+ELF +GTITS KVM
Sbjct: 319 KQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDSTPAERTET 378
Query: 343 ----------------------------------------VDQHGFSKGSGFA--AFSMP 360
D+ K GF FS P
Sbjct: 379 PDSEKEKEVNKENEKKEDEEKAAEEKPKESDEEKKDETKKSDKKLLGKSKGFGFVCFSSP 438
Query: 361 EEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQF-AQIRAPGGMSPLASGIPGYH 419
+EA++A+ EMN +M+ KPLYVA+AQRK+ R+++L+A A+ + A+G+P
Sbjct: 439 DEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMP--- 495
Query: 420 HGAPRLGPQQLYYGQGTPGLMPP-QAAGYGFQQQV-----FPGLRPGGPNYIMPYHLQRQ 473
P + P ++YG G G +P Q G F Q PG RPG Y P+
Sbjct: 496 --QPYMQP-AVFYGPGQQGFIPAGQRGGMPFAPQPGMVMGIPGGRPG--QYPGPF----- 545
Query: 474 VHPGQRTGVRRSGNTHQMQQPQFM---RNSNQGIRYLDNAR---NGTDQSVVSMVPVPFE 527
PGQ+ G R G QM P F + QG + N Q +
Sbjct: 546 --PGQQGG-RGMGPNQQM-PPNFQGIPMGAMQGPGGIPNGMGYPQAMGQVQFGRGGGRGQ 601
Query: 528 VSGMP-------------------------------ATPVETPRPVPVPISTLTSALASA 556
V GMP A P P T AL +A
Sbjct: 602 VPGMPMGQGMRGPGYQGRGGPQGGPRPQGGRGQNAAAQPAAGREEAPAGALT-AQALNAA 660
Query: 557 SPDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTKVAEAMAV 616
+P + +MLGE LYP ++ +P A K+TGMLLEMD TE+L L+E +AL+ KV EA++V
Sbjct: 661 APPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLGLLEDDDALRAKVDEALSV 720
Query: 617 LQE 619
E
Sbjct: 721 YDE 723
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 460 bits (1184), Expect = e-128, Method: Compositional matrix adjust.
Identities = 282/682 (41%), Positives = 385/682 (56%), Gaps = 98/682 (14%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ SLYVG+L+ +V E+ L++LFSQ+ V S+RVCRD R SLGYAYVNY+ D A
Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 118
Query: 87 EALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCK 146
E LN+ I G+P RIM+S RDP++RK+G GN+FIKNLD +IDNKAL DTFAAFG +LSCK
Sbjct: 119 EELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCK 178
Query: 147 VAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQ--QNVSP 204
VA D +G SKGYGFV +E +EAA AIK +NGML+N+K+VYVG + +++R + +
Sbjct: 179 VAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 238
Query: 205 KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAV 264
FTNVYV N+ VTDE+ +++F FG +TS+ + +D +GKSR FGFVNF + +AAA AV
Sbjct: 239 NFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAV 298
Query: 265 EKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDE 324
++LNG + YVGRAQK+ ERE +LR +E R+ + K +G NLY+KNL D ++D+
Sbjct: 299 DELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDD 358
Query: 325 KLKELFSEFGTITSCKVMVD---------------------------------------- 344
KL+ +FSE+G ITS KVM D
Sbjct: 359 KLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKGD 418
Query: 345 -QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
+ G SKG GF FS P++AT+A+ EMN +M+ KPLYVA+AQRK+ RK++L+A Q R
Sbjct: 419 RKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEASI-QAR 477
Query: 404 APGGMSPLA--SGIPGYHHGAPRLGPQQLYYGQGTPGLMP-PQAAGYGFQQ-QVFPGLRP 459
M A +G+P + AP +YY PG MP P G F Q + PG++
Sbjct: 478 NQLRMQQAAAQAGMPQQYMQAP------VYYAGQQPGFMPAPGGRGVPFPQGGIVPGVQG 531
Query: 460 GGPNYIMPYH------LQRQVHPGQRTGVRRSG-NTHQMQQPQFMRNSNQGIRYLDNARN 512
G P PY + Q P + + G PQ+M Q + L R
Sbjct: 532 GRPGQY-PYQQGGRGGVPPQQMPPMGYPINQFGPGAFPPNTPQYMAAMGQ-VGALGGGRG 589
Query: 513 GTDQSVVSMVP--VPFEVSGMPATPVETP--RP----------------------VPVP- 545
G +P +P + G PA P P RP P+P
Sbjct: 590 GPAGRGPQGIPAGIPQGLQGGPAVPGYPPAGRPQNGGGRGTPRGNANFMAAGRGASPIPG 649
Query: 546 -------ISTLTSALASA-SPDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVL 597
S L + LA+ P + +++GE L+P ++ I+P A K+TGMLLEMD E++
Sbjct: 650 APADLSAGSFLQAQLATTQDPQAQKQIIGENLFPKIQAIQPALAGKITGMLLEMDNAELI 709
Query: 598 HLIESPEALKTKVAEAMAVLQE 619
+L E AL KV EA+AV E
Sbjct: 710 NLFEDDNALNVKVQEALAVYDE 731
Score = 143 bits (360), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 160/336 (47%), Gaps = 66/336 (19%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
+G GN+ ++ +L+ ++ L+D F+ ++S +V +D+ S GY +V+Y + A
Sbjct: 145 TGAGNI--FIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSK-GYGFVHYETDEAA 201
Query: 83 ANAKEALNFMPINGKPIRIMYSHRDPSIR--------KSGYGNVFIKNLDTSIDNKALCD 134
+ A + +N M +N K ++ H P K+ + NV++KN++ + ++ +
Sbjct: 202 SQAIKHVNGMLLNEK--KVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRE 259
Query: 135 TFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRR 194
FA FG V S +A D G+S+G+GFV F EAA A+ LNG + +YVG ++
Sbjct: 260 LFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKK 319
Query: 195 QERAQQ----------NVSPKF--TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS 242
ER ++ + K+ N+Y+ NL + V D+ L+ +F +G ITSA VM+DS
Sbjct: 320 HEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDDKLRAMFSEYGPITSAKVMRDS 379
Query: 243 -----------------------------------------DGKSRCFGFVNFQSPDAAA 261
GKS+ FGFV F +PD A
Sbjct: 380 LIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKGDRKLGKSKGFGFVCFSNPDDAT 439
Query: 262 AAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFE 297
AV ++N + K YV AQ++ R++ L A +
Sbjct: 440 KAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQ 475
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 449 bits (1155), Expect = e-125, Method: Compositional matrix adjust.
Identities = 225/387 (58%), Positives = 283/387 (73%), Gaps = 10/387 (2%)
Query: 20 AVPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNP 79
A S Y SLYVGDL +V E+ LY+ FS V+S+RVCRD R SLGYAYVN+ P
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 80 QDAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAF 139
DA A + +NF I GKPIRIM+S RDPS+RKSG GNVFIKNLD SIDNKAL DTF+AF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 140 GTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQ 199
G +LSCKV D NG SKGY FV FE +EAA AI+ +NGML+ND++V+VG F R+ER
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 200 Q--NVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSP 257
+ + +FTNVY+ N E V DE LK++F FG S VM+D +GKS+ FGFV+++
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 258 DAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFE---QERISRYEKLKGANLYL 314
+ A AVE++NG + K+ +VGRAQK+ ER+A+L+ KFE QERISRY+ G NLY+
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ---GVNLYI 298
Query: 315 KNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKM 374
KNLDD+I+DEKL++ FS FG+ITS KVM++ G SKG GF FS PEEAT+A+ EMNG++
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 375 IGRKPLYVAVAQRKEERKARLQAQFAQ 401
+G KPLYVA+AQRKEERKA L Q+ Q
Sbjct: 358 VGSKPLYVALAQRKEERKAHLTNQYMQ 384
Score = 177 bits (449), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 166/288 (57%), Gaps = 16/288 (5%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
++++ +L + + L + F+ G VLS +V D +S GY +V F+ A+ A+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITS 235
+N +I K + + R + V NV++ NL +++ ++ L F FG I S
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVG----NVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 236 AIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAK 295
V+ D +G S+ + FV+F++ +AA A+EK+NG ND+ +VGR + R EREA+L AK
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 296 FEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFA 355
++ N+Y+KN + ++DE LKELFS+FG S KVM D +G SKG GF
Sbjct: 187 AKE----------FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFV 236
Query: 356 AFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
++ E+A +A+ EMNGK I K ++V AQ+K ER+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 77/105 (73%), Gaps = 7/105 (6%)
Query: 535 PVETPRP-VPV----PISTLTSALASASPDDRTRMLGEQLYPLVENIEPVHASKVTGMLL 589
P++ P+P V V P++ S LA+A P ++ +MLGE+L+PL++ + A K+TGMLL
Sbjct: 538 PLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLL 595
Query: 590 EMDQTEVLHLIESPEALKTKVAEAMAVLQEAAARSDVNEKLGSLA 634
E+D +E+LH++ESPE+L++KV EA+AVLQ A+ + +K+G++A
Sbjct: 596 EIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVA 640
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 449 bits (1154), Expect = e-125, Method: Compositional matrix adjust.
Identities = 269/649 (41%), Positives = 377/649 (58%), Gaps = 41/649 (6%)
Query: 2 EATGAAAATAAVTSATTAAVPSGYG--NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRV 59
E++ A +++ SA SG + SLYVG+L +VNE+ L+++FS + QV S+RV
Sbjct: 39 ESSDATSSSVPADSAEEQGESSGIAENSASLYVGELNPSVNEATLFEIFSPIGQVASIRV 98
Query: 60 CRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVF 119
CRD + SLGYAYVNY +D A E LN+ P+ G+P RIM+S RDPS R+SG GN+F
Sbjct: 99 CRDAVSKKSLGYAYVNYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIF 158
Query: 120 IKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGM 179
IKNL +IDNKAL DTF+AFG +LS KVA D GQSK +GFV +E EEAAQ AI+ +NGM
Sbjct: 159 IKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNGM 218
Query: 180 LINDKQVYVGLFVRRQERAQ--QNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAI 237
L+ND++VYVG V +++R + + +TN+YV N+ T+++ +++F FG ITS
Sbjct: 219 LLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIY 278
Query: 238 VMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFE 297
+ KD++GKS+ FGFVNF+ +AAA AVE+LN N + YVGRAQK+ ER +L+ ++E
Sbjct: 279 LEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYE 338
Query: 298 QERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAF 357
R+ + K +G NL++KNLD+ I+ EKL+E F FGTITS KVMVD G SKG GF F
Sbjct: 339 AVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCF 398
Query: 358 SMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFA---QIRAPGGMSPLASG 414
S PEEAT+A+ EMN +M+ KPLYVA+AQRK+ R+++L+ Q Q+R + A G
Sbjct: 399 STPEEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAAA--AGG 456
Query: 415 IPGYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGPNYIMPYHLQRQV 474
+PG + P ++YGQ G PP G FP GPN M + Q
Sbjct: 457 LPGQF-----MPP--MFYGQ--QGFFPPNGRG----NAPFP-----GPNPQMMMRGRGQP 498
Query: 475 HPGQ--RTGVRRSGNTHQMQQPQFMRNSNQGIRYLDNARNGTDQSVVSMVPVPFEVSGMP 532
P Q R G PQF + Q +R + Q + P
Sbjct: 499 FPEQWPRPGPNGQPVPVYGMPPQFQDFNGQNMRPQQQQQQQQQQQQQQQQQRGY----YP 554
Query: 533 ATPVETPRPVPVPISTLTSALASASPDDRTRMLGEQLYPLV----ENIEPVHASKVTGML 588
P VP L + +A+A + + R+LGE+LY + + EP A K+TGM+
Sbjct: 555 NRPAGG----NVPAKDLAALIANAPLEAQKRILGEELYQRIVATGKAQEPEAAGKITGMM 610
Query: 589 LEMDQTEVLHLIESPEALKTKVAEAMAVLQEAAARSDVNEKLGSLAVNE 637
L ++ E+L L++ E EA+ +E N G+ A +E
Sbjct: 611 LGLENQEILDLLDDEELFNNHFEEALNAFEEYKNSEGANAATGAPAPSE 659
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 435 bits (1118), Expect = e-121, Method: Compositional matrix adjust.
Identities = 264/626 (42%), Positives = 370/626 (59%), Gaps = 52/626 (8%)
Query: 8 AATAAVTSATTAAVPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRS 67
AA +A S T+A SLYVG+L +VNE+ L+++FS + QV S+RVCRD +
Sbjct: 40 AADSAQVSDTSA---------SLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKK 90
Query: 68 SLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSI 127
SLGYAYVN+ +D A E LN+ I G+P RIM+S RDPS+R++G GN+FIKNL +I
Sbjct: 91 SLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAI 150
Query: 128 DNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVY 187
DNKAL DTF AFG +LSCKVA D G SK +GFV +E EAA+ AI+ +NGML+ND++VY
Sbjct: 151 DNKALHDTFTAFGKILSCKVATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVY 210
Query: 188 VGLFVRRQERAQ--QNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGK 245
VG + +++R + + FTNVY N+ ++E+ KK+F +G ITS + KD +GK
Sbjct: 211 VGKHISKKDRESKFEEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGK 270
Query: 246 SRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYE 305
S+ FGFVNF++ ++A AV++LN N + YVGRAQK+ ER +L+ ++E R+ +
Sbjct: 271 SKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLS 330
Query: 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATR 365
K +G NL++KNLDD+I+ EKL+E F FG+ITS +VMVD+ G SKG GF FS PEEAT+
Sbjct: 331 KYQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATK 390
Query: 366 ALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRAPGGMSPLAS--GIPGYHHGAP 423
A+ EMN +MI KPLYVA+AQRK+ R+++L+ Q Q R M A+ GIPG
Sbjct: 391 AITEMNQRMIYGKPLYVALAQRKDVRRSQLEQQI-QARNQMRMQNAAATGGIPGQF---- 445
Query: 424 RLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGPNYIMPYHLQRQVHPGQRTGVR 483
+ P ++YGQ PG PP G G FPG P +MP + Q+ P Q R
Sbjct: 446 -IPP--MFYGQ-QPGFFPPNGRGNG----PFPG---PNPQMMMP---RGQIPPPQGQWPR 491
Query: 484 RSGNTHQMQQPQFMRNSNQGIRYLDNARNGTDQSVVSMVPVPFEVSGMPATPVETPRPVP 543
N + P + G + + A G Q P
Sbjct: 492 PGPNGQPV--PVYGMPPVYGGDFNNGANGGRQQRGY--------------YPNRNQNQKG 535
Query: 544 VPISTLTSALASASPDDRTRMLGEQLYPLVENI----EPVHASKVTGMLLEMDQTEVLHL 599
L + +A+A D + R+LGE+LYP + + EP A K+TGM+L++D E+L L
Sbjct: 536 RQQKDLAAIIANAPADQQKRILGEELYPKIVSTGKAQEPEAAGKITGMMLDLDNEEILAL 595
Query: 600 IESPEALKTKVAEAMAVLQEAAARSD 625
+E E T +A+ +E S+
Sbjct: 596 LEDDELFNTHFEDALTAFEEYKKSSE 621
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 433 bits (1114), Expect = e-120, Method: Compositional matrix adjust.
Identities = 264/640 (41%), Positives = 367/640 (57%), Gaps = 90/640 (14%)
Query: 5 GAAAATAAVTSATTAAVPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQS 64
G A +A + +TA SLYVG+L +VNE+ L+++FS + QV S+RVCRD
Sbjct: 38 GEEGADSANVAESTA---------SLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAV 88
Query: 65 KRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLD 124
+ SLGYAYVNY +D A E LN+ PI G+P RIM+S RDPS R+SG GN+FIKNL
Sbjct: 89 SKKSLGYAYVNYHKMEDGEKAIEELNYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLH 148
Query: 125 TSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDK 184
+IDNKAL DTF+ FG +LSCKVA D GQSK +GFV +E EAA+ AI+ +NGML+ND+
Sbjct: 149 PAIDNKALHDTFSTFGKILSCKVATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDR 208
Query: 185 QVYVGLFVRRQERAQ--QNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS 242
+V+VG + +++R + + FTN+YV N+ ++EDLKK+F +G ITS + KD+
Sbjct: 209 EVFVGKHISKKDRESKFEEIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDA 268
Query: 243 DGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERIS 302
+GKS+ FGFVN++ +AA AVE+LN N + YVGRAQK+ ER +L+ ++E R+
Sbjct: 269 EGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLE 328
Query: 303 RYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEE 362
+ K +G NL++KNLDD+I+ EKL+E F FGTITS +VMVD+ G SKG GF FS PEE
Sbjct: 329 KLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEE 388
Query: 363 ATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFA---QIR-----APGGMS----- 409
AT+A+ EMN +M KPLYVA+AQRK+ R+++L+ Q Q+R A GG+
Sbjct: 389 ATKAITEMNQRMFFGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAAATGGIPGQFIP 448
Query: 410 PLASGIPGY-----HHGAPRLGPQ-QLYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGPN 463
P+ G G+ AP GP Q+ +G P P Q +P RPG
Sbjct: 449 PMFYGQQGFFPPNGRGNAPFPGPNPQMIMRRGQPFGGPEQ----------WP--RPGPNG 496
Query: 464 YIMPYHLQRQVHPGQRTGVRRSGNTHQMQQPQFMRNSNQGIRYLDNARNGTDQSVVSMVP 523
+P + P Q N Q + RN N+G + D
Sbjct: 497 QPVPVY----GIPPQAYSDFNGQNIRQQRGYYPNRNQNKGRQQRD--------------- 537
Query: 524 VPFEVSGMPATPVETPRPVPVPISTLTSALASASPDDRTRMLGEQLYPLV----ENIEPV 579
L + +ASA PD + R+LGE+LYP + + EP
Sbjct: 538 -------------------------LAAIIASAPPDQQKRILGEELYPKIVATGKAQEPE 572
Query: 580 HASKVTGMLLEMDQTEVLHLIESPEALKTKVAEAMAVLQE 619
A K+TGM+L++D E+L L+E E +A+ +E
Sbjct: 573 AAGKITGMMLDLDNQEILALLEDDELFTNHFEDALTAFEE 612
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 427 bits (1098), Expect = e-118, Method: Compositional matrix adjust.
Identities = 283/695 (40%), Positives = 374/695 (53%), Gaps = 114/695 (16%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ SLYVG+L+ +V E+ L++LFS + QV S+RVCRD R SLGYAYVNY+N D A
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 113
Query: 87 EALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCK 146
E LN+ I G+P RIM+S RDP++RK+G GNVFIKNLDT+IDNKAL DTFAAFG +LSCK
Sbjct: 114 EDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 173
Query: 147 VAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQ--QNVSP 204
VA D G SKGYGFV +E EAAQNAIK +NGML+NDK+V+VG + +++R + +
Sbjct: 174 VAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKA 233
Query: 205 KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSD-GKSRCFGFVNFQSPDAAAAA 263
FTNVYV N+ + T+E+ + +F FG ITSA + +D++ GKSR FGFVNF S D AAAA
Sbjct: 234 NFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAA 293
Query: 264 VEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKN----LDD 319
VE LN + YVGRAQK+ ERE +LR ++E RI + K +G NLY+KN +DD
Sbjct: 294 VEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDD 353
Query: 320 -----------SINDEKLKELFSEFGTITSCKVMVDQH---------------------- 346
+I K+ F+ T S K
Sbjct: 354 EKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKD 413
Query: 347 ----------------GFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEE 390
G SKG GF FS P+EA++A+ EMN +M+ KPLYVA+AQRK+
Sbjct: 414 NKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDV 473
Query: 391 RKARLQAQF-AQIRAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYGF 449
R+++L+A A+ + A+G+P P + P ++YG G +P Q G F
Sbjct: 474 RRSQLEASIQARNTIRQQQAAAAAGMP-----QPFMQPA-VFYGPGQQNFIPNQRGGMPF 527
Query: 450 QQ--QVFPGLRPGG------------------PNYIMP---YHLQRQVHPG--QRTGVRR 484
QQ V PG+ PGG PN +P Y + Q P Q G+
Sbjct: 528 QQPGMVIPGM-PGGRHGQFGGFPGQQGGRGMNPNQQIPPNAYGIGAQGLPMGMQGAGIPN 586
Query: 485 SGNTHQMQQPQ--FMRNSNQGIRYLDNARNGTDQSVVSMVPVPFEVSGMP-----ATPVE 537
N QM Q Q F R Q + G +V M P GMP P +
Sbjct: 587 GLNYPQMGQVQAPFGRGRGQAP-----SGQGMPPNVQGMGPGGQYGRGMPVQQGMGRPGQ 641
Query: 538 TPRPVPVPISTLTSALASASPDDRT-------------RMLGEQLYPLVENIEPVHASKV 584
R P + +ASP+ T +MLGE +YP ++ +P A K+
Sbjct: 642 AGRGQGAPAQAVGQRDENASPNGLTLQVLNAAPPAQQKQMLGEAIYPKIQAQQPELAGKI 701
Query: 585 TGMLLEMDQTEVLHLIESPEALKTKVAEAMAVLQE 619
TGMLLEMD E+L L++ ALK KV EA+ V E
Sbjct: 702 TGMLLEMDNAELLALVDDDAALKAKVDEALTVYDE 736
Score = 86.3 bits (212), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 102/202 (50%), Gaps = 21/202 (10%)
Query: 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAA 262
P ++YV L +VT+ L ++F G + S V +D+ +S + +VN+ +
Sbjct: 52 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 263 AVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSIN 322
A+E LN T + + +Q R+ LR K N+++KNLD +I+
Sbjct: 112 ALEDLNYTLIKGRPCRIMWSQ----RDPALR------------KTGQGNVFIKNLDTAID 155
Query: 323 DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYV 382
++ L + F+ FG I SCKV D+ G SKG GF + E A A+ +NG ++ K ++V
Sbjct: 156 NKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFV 215
Query: 383 AVAQRKEERKARLQAQFAQIRA 404
K++R Q++F +++A
Sbjct: 216 GHHIAKKDR----QSKFEEMKA 233
Score = 37.4 bits (85), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 53/143 (37%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRD-----------QSKRSSL-- 69
S Y V+LY+ +L ++++ +L +LFS + S +V RD ++K+ S
Sbjct: 335 SKYQGVNLYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEP 394
Query: 70 ---------------------------------------GYAYVNYSNPQDAANAKEALN 90
G+ +V +S+P +A+ A +N
Sbjct: 395 ETKEEEPKDEAGDNAENKDNKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMN 454
Query: 91 FMPINGKPIRIMYSHRDPSIRKS 113
++GKP+ + + R +R+S
Sbjct: 455 QRMVHGKPLYVALAQRK-DVRRS 476
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 426 bits (1096), Expect = e-118, Method: Compositional matrix adjust.
Identities = 247/605 (40%), Positives = 351/605 (58%), Gaps = 84/605 (13%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
N SLYVG+L+ N+ E+ LYD+FS + + S+RVCRD ++SLGYAYVNY++ + A
Sbjct: 49 NASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAI 108
Query: 87 EALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCK 146
+ LN+ ING+P RIM+S RDP+IRK G GN+FIKNL +IDNKAL +TF+ FG VLSCK
Sbjct: 109 QELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCK 168
Query: 147 VAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQ--QNVSP 204
VA+D NG S+G+GFV F+ E A++AI+ +NGML+N +VYV + V +++R +
Sbjct: 169 VALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKA 228
Query: 205 KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAV 264
FTN+YV N+ TDE+ +++F +G I SA + KD++GK + FGFVNF +AAA AV
Sbjct: 229 NFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAV 288
Query: 265 EKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDE 324
E+LNG + YVGRAQK+ ER +L+ ++EQ R+ + K +G NL++KNLDDSI+DE
Sbjct: 289 EELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDE 348
Query: 325 KLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384
KLKE F+ +GTITS +VM DQ G SKG GF FS PEEAT+A+ E N +++ KPLYVA+
Sbjct: 349 KLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAI 408
Query: 385 AQRKEERKARLQAQFA---QIR----APGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTP 437
AQRK+ R+++L Q QIR + A+G+PG + PQ Y
Sbjct: 409 AQRKDVRRSQLAQQIQARNQIRFQQQQQQQAAAAAAGMPGQYM------PQMFY------ 456
Query: 438 GLMPPQAAGYGFQQQVFPGLRPG--GPNYIMPYHLQRQVHPGQRTGVRRSGNTHQMQQPQ 495
G+M P+ FPG PG GP G+ ++G
Sbjct: 457 GVMAPRG---------FPGPNPGMNGP---------------MGAGIPKNG--------- 483
Query: 496 FMRNSNQGIRYLDNARNGTDQSVVSMVPVPFEVSGMPATPVETPRPVPVPISTLTSALAS 555
MVP P + +G P P+ P
Sbjct: 484 -------------------------MVPPPQQFAGRPNGPMYQGMPPQNQFPRHQQQHYI 518
Query: 556 ASPDDRTRMLGEQLYPLVE-NIEPVHAS-KVTGMLLEMDQTEVLHLIESPEALKTKVAEA 613
R + LGEQLY V I+ +A+ K+TGM+L++ +V+ L+++ E + + EA
Sbjct: 519 QQQKQR-QALGEQLYKKVSAKIDDENAAGKITGMILDLPPQQVIQLLDNDEQFEQQFQEA 577
Query: 614 MAVLQ 618
+A +
Sbjct: 578 LAAYE 582
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 426 bits (1095), Expect = e-118, Method: Compositional matrix adjust.
Identities = 265/599 (44%), Positives = 361/599 (60%), Gaps = 21/599 (3%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
N SLYVG+L+ +V E+ L+++FS + V S+RVCRD R SLGYAYVN+ N D A
Sbjct: 46 NTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGERAM 105
Query: 87 EALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCK 146
E LN+ I +P RIM+S RDP++R++G GN+FIKNLD IDNKAL DTFAAFG +LSCK
Sbjct: 106 EQLNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCK 165
Query: 147 VAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQ--QNVSP 204
VA + G S GYGFV +E EAA+ AIK +NGML+NDK+VYVG + R+ER +
Sbjct: 166 VATNETG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEETRA 224
Query: 205 KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAV 264
FTNVY N+ VTD++ +K+F FG ITS ++ +D DGKS+ FGFVNF+ + A AV
Sbjct: 225 NFTNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAV 284
Query: 265 EKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDE 324
++L+ + + +V RAQK++ERE +LR +E + + K +G NLYLKN+ +S +DE
Sbjct: 285 DELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDE 344
Query: 325 KLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384
+L+E F+ FG ITSCK+M G S+G GF +S PEEA +A++EMNGKM+ +PLYVA+
Sbjct: 345 RLREEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVAL 404
Query: 385 AQRKEERKARLQAQFAQIRAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQA 444
AQRK+ R+ +L+AQ Q A+ GY GP +YY Q PG P Q
Sbjct: 405 AQRKDVRRQQLEAQIMQRNQLRLQQQAAAQGMGYP------GP-GMYYPQ--PGAFPGQP 455
Query: 445 AGYGFQQQVFP-GLRPGGPNYIMPYHLQRQVHPGQRTGVRRSGNTHQMQQPQFMRNSNQG 503
G + + P G+ P G + PY Q G R + +
Sbjct: 456 GGMVPRPRYAPAGMMPQG-MPMAPYGQPGQFPAGMMPQGYRPARPPRGAPNAAGGPAPPA 514
Query: 504 IRYLDNARNGTDQSVVSMVPVPFEVSGMPATPVETPRPVPV---PISTLTSALASASPDD 560
NG + PVP + MP P P P P + +ALA ASP++
Sbjct: 515 GARPPTGVNGAPRPAGQ--PVPGQP--MPRGPAARPAGRPEADQPGALTAAALAKASPEE 570
Query: 561 RTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTKVAEAMAVLQE 619
+ +MLGE +YP V +P A K+TGM+LE+ TE+LHL+E EAL KV EA+ VL+E
Sbjct: 571 QKQMLGEAIYPKVAASQPELAGKLTGMILELPVTELLHLLEESEALDAKVNEALEVLKE 629
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 426 bits (1094), Expect = e-118, Method: Compositional matrix adjust.
Identities = 255/599 (42%), Positives = 362/599 (60%), Gaps = 44/599 (7%)
Query: 30 LYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL 89
LYVG+L +VNE+ L+++FS + QV S+RVCRD + SLGYAYVN+ D + A E L
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 90 NFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAI 149
N+ ++G+P RIM+S RDPS+R++G GN+FIKNL +IDNKAL DTF+AFG +LSCKVA
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVAT 179
Query: 150 DSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQ--QNVSPKFT 207
D GQSK +GFV +E EAA+ AI+ +NGML+ND++V+VG V +++R + + FT
Sbjct: 180 DELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFT 239
Query: 208 NVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKL 267
NVYV NLA V + ++IF FG +TS + D +GKSR FGFVNF++ ++A AV+++
Sbjct: 240 NVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEM 299
Query: 268 NGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLK 327
N + + YVGRAQK+ ER +L+ +E R+ + K +G NL++KNLDDSI+ EKL+
Sbjct: 300 NDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLE 359
Query: 328 ELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQR 387
E F FGTITS +VMVD G SKG GF FS PEEAT+A+ EMN +MI KPLYVA+AQR
Sbjct: 360 EEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQR 419
Query: 388 KEERKARLQAQFA---QIRAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQA 444
K+ R+++L+ Q Q+R + A+G+PG + P ++YGQ PG PP
Sbjct: 420 KDVRRSQLEQQIQARNQMRMQNAAA--AAGMPGQF-----MSP--MFYGQ-QPGFFPPNG 469
Query: 445 AGYGFQQQVFPGLRPGGPNYIMPYHLQRQVHPGQRTGVRRSGNTHQMQQPQFMRNSNQGI 504
G G Q G P P +MP Q+ P Q R N + P + G
Sbjct: 470 RG-GAQ-----GPFPPNPQMMMPRG--GQMPPPQGQWPRAGPNGQPV--PVYGMPPVYGG 519
Query: 505 RYLDNARNGTDQSVVSMVPVPFEVSGMPATPVETPRPVPVPISTLTSALASASPDDRTRM 564
+ N NG Q + P + G P L + +++ D + R+
Sbjct: 520 EF--NGPNGQRQQRGAYPPNRNQKGGRPQ-------------RDLAAIISTVPVDQQKRI 564
Query: 565 LGEQLYPLV----ENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTKVAEAMAVLQE 619
LGE+LYP + + EP A K+TGM+L+++ E+L L+E E + +A+ +E
Sbjct: 565 LGEELYPKIVATGKAQEPEAAGKITGMMLDLENEEILALLEDDELFENHFEDALTAFEE 623
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 425 bits (1092), Expect = e-118, Method: Compositional matrix adjust.
Identities = 255/595 (42%), Positives = 340/595 (57%), Gaps = 49/595 (8%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
SLYVGDL V+E L+++F+QV V ++RVCRD + R SL YAYVNY N DA A +
Sbjct: 11 SLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDT 70
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN PI GK RIM+S RDPS+RKSG GNVFIKNLD ID+KAL DTF+AFG +LSCKV
Sbjct: 71 LNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVV 130
Query: 149 IDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTN 208
D SKG+GFV +E +E+A AI +NGM+IN ++V+VG F +ER Q KFTN
Sbjct: 131 TDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQP-TEVKFTN 189
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLN 268
V+ NL+E V + LK++ +G IT+ +M D GKS+ FGF NF+S +AA VE N
Sbjct: 190 VFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENEN 249
Query: 269 GTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKE 328
G + K Y GRAQK+ EREA+L+ FE K +G NLY+KN+DDSI+++KL+E
Sbjct: 250 GKIFHGKPIYAGRAQKKIEREAELKHTFE-------TKYQGVNLYIKNIDDSIDNDKLRE 302
Query: 329 LFSEFGTITSCKVMVDQHG-FSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQR 387
+FS+FGTITS VM D SKG GF ++ P+EATRA+ EMNG+MIG KPLYVA+AQR
Sbjct: 303 VFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVALAQR 362
Query: 388 KEERKARLQAQFAQIRAPG---GMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQA 444
K+ R+A+L+ Q Q G M P P + AP + PQ +Y M P+
Sbjct: 363 KDIRRAQLEMQHQQKFKTGIRQQMPPTYGSGPVFFTPAP-VNPQVVYQ------QMMPRP 415
Query: 445 AGYGFQQQVFPGLRPGGPNYIMPYHLQRQVHPGQRTGVRRSGNTHQMQQPQFMRNSNQGI 504
+ Q P + NY R R++G QP+
Sbjct: 416 RNWNGQPVGVPQGQYANMNYA-------------RGQPRQNGPRQNGGQPR--------- 453
Query: 505 RYLDNARNGTDQSVVSMVPVPF-EVSGMPATPVETPRPVPVPISTLTSALASASPDDRTR 563
+NG V P+P + + + + L S + S D +
Sbjct: 454 ------QNGPRPDVSGAQPIPVQQQTTLDVAQTQQAASSAESALNLQSIINLPSRDQQNV 507
Query: 564 MLGEQLYPLVENIEPVHASKVTGMLLE-MDQTEVLHLIESPEALKTKVAEAMAVL 617
LGE LYPL+ N +P A K+TGMLL+ + E+ L + + L K+ EA+ VL
Sbjct: 508 ALGEHLYPLIHNSQPDLAGKITGMLLDSLPVEELFTLTQRQDLLADKIREALEVL 562
Score = 93.2 bits (230), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 104/203 (51%), Gaps = 17/203 (8%)
Query: 201 NVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDG-KSRCFGFVNFQSPDA 259
N +P +++YV +L V+++ L +IF G +++ V +D++ +S + +VN+ +
Sbjct: 4 NFTPISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGAD 63
Query: 260 AAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDD 319
A A++ LN T K + +Q R+ LR K N+++KNLD
Sbjct: 64 AERALDTLNNTPIRGKACRIMWSQ----RDPSLR------------KSGVGNVFIKNLDK 107
Query: 320 SINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKP 379
I+ + L + FS FG I SCKV+ D SKG GF + E A +A+ ++NG MI +
Sbjct: 108 GIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQK 167
Query: 380 LYVAVAQRKEERKARLQAQFAQI 402
++V + +ER + +F +
Sbjct: 168 VFVGPFKSSKERGQPTEVKFTNV 190
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAAN 84
Y V+LY+ +++ +++ +L ++FSQ + S V +D +S G+ +V Y+ P +A
Sbjct: 281 YQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATR 340
Query: 85 AKEALNFMPINGKPIRIMYSHRDPSIRKS 113
A +N I KP+ + + R IR++
Sbjct: 341 AVTEMNGRMIGTKPLYVALAQRK-DIRRA 368
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 424 bits (1091), Expect = e-118, Method: Compositional matrix adjust.
Identities = 248/620 (40%), Positives = 359/620 (57%), Gaps = 70/620 (11%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
N SLYVG+L+ +V E+ L+++F+ + V SVRVCRD R SLGYAYVN+ N D A
Sbjct: 45 NASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRAL 104
Query: 87 EALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCK 146
E LN+ PI +P RIM+S RDP++RK+G GN++IKNLD +IDNKAL DTF+AFG +LSCK
Sbjct: 105 EELNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQILSCK 164
Query: 147 VAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPK- 205
+A D G S+G+GFV +E+ E+A++AI+ +NGML+NDK+V+VG V + +R Q K
Sbjct: 165 IATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGPHVPKSDRMQSFEEQKN 224
Query: 206 -FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAV 264
FTNV++ NL +T+ + +++ FG +S + + +GK FGFV+++ D A A+
Sbjct: 225 SFTNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAI 284
Query: 265 EKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDE 324
+ L+ T + GRA+K+ ER +LR ++E R+ + K +G NLY+KNLDD+I+D+
Sbjct: 285 DGLSETEFKGNKLFAGRAKKKYERADELRKQYEASRLEKLNKYQGVNLYIKNLDDTIDDD 344
Query: 325 KLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384
KL+ F+ GTITS KVMVD+ G SKG GF +S PEEAT+A+ EMN +++ KPLYV +
Sbjct: 345 KLRAEFAPHGTITSAKVMVDEAGKSKGFGFVCYSSPEEATKAVTEMNHRLVAGKPLYVVL 404
Query: 385 AQRKEERKARLQAQFAQIRAPGGM----SPLASGIPGYHHGAPRLGPQQLYYGQGTPGLM 440
AQRK+ R+++LQ QI+A M A G+PG + G P + Y GQ PG M
Sbjct: 405 AQRKDVRRSQLQ---QQIQAKNQMRLQQQAAAGGLPGQYMGNPGV----FYPGQ--PGFM 455
Query: 441 PPQAAGYGF--------------QQQVFPGLRPGGPNYIM--PYHLQRQVHPGQRTGVRR 484
PP G F Q Q P PGGPN P Q+ P Q G R
Sbjct: 456 PPGRGGMPFGANPQMMMRPPMPPQNQFPPRGVPGGPNMYGAPPQGYQQGGFPPQ--GPMR 513
Query: 485 SGNTHQMQQPQFMRNSNQGIRYLDNARNGTDQSVVSMVPVPFEVSGMPATPVETPRPVPV 544
G + QP QG ++ R +S V+
Sbjct: 514 GGQPPRSGQP-----GPQG-QFRGAPRRKDGESRVA------------------------ 543
Query: 545 PISTLTSALASASPDDRTRMLGEQLYPLVENIEPVH-----ASKVTGMLLEMDQTEVLHL 599
++++AL +A + +++GE LYP V + + A K+TGMLLEM E+L +
Sbjct: 544 --DSISNALENAPEEQHKQLVGEALYPKVLAEKAIDGNAEFAGKITGMLLEMPIKEILEV 601
Query: 600 IESPEALKTKVAEAMAVLQE 619
I+ E L+ ++ +A+ E
Sbjct: 602 IDDEEGLQAQINDAITAYNE 621
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 420 bits (1079), Expect = e-116, Method: Compositional matrix adjust.
Identities = 230/506 (45%), Positives = 308/506 (60%), Gaps = 59/506 (11%)
Query: 18 TAAVPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYS 77
++A P + SLYVG+L+ +V E+ L++LFSQ+ V S+RVCRD R SLGYAYVNY+
Sbjct: 55 SSAAPHPQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYN 114
Query: 78 NPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFA 137
+ D A E LN+ I G+P RIM+S RDP++RK+G GNVFIKNLD +IDNKAL DTFA
Sbjct: 115 STSDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFA 174
Query: 138 AFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQER 197
AFG +LSCKVA D NG SKGYGFV +E +EAA AIK +N ML+N+K+VYVG + +++R
Sbjct: 175 AFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDR 234
Query: 198 AQ--QNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQ 255
+ + FTN+YV N++ TDE+ + +F +G +TS+ + +DS+GKSR FGFVNF
Sbjct: 235 QSKFEEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFT 294
Query: 256 SPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLK 315
+ + AA AVE+LNG + YVGRAQK+ ERE +LR +E R+ + K +G NLY+K
Sbjct: 295 THECAAKAVEELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIK 354
Query: 316 NLDDSINDEKLKELFSEFGTITSCKVMVD------------------------------- 344
NL D I+D+KL+++FSE+G ITS KVM D
Sbjct: 355 NLADDIDDDKLRQMFSEYGPITSAKVMRDAVTEGSAEEETEGKDKENKKEGEQAAEAEGE 414
Query: 345 --------------QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEE 390
+ G SKG GF FS P++AT+A+ EMN +MI KPLYVA+AQRK+
Sbjct: 415 AEGAEKKTEKKGDRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRKDV 474
Query: 391 RKARLQAQFAQIRAPGGMSPLA--SGIPGYHHGAPRLGPQQLYYGQG-TPGLMPPQAAGY 447
RK +L+A Q R M A +G+P + P +YY G P MPP G
Sbjct: 475 RKNQLEASI-QARNQLRMQQAAAQAGLPQQYMQTP------VYYAPGQQPNFMPPGGRGM 527
Query: 448 GFQQQVF--PGLRPGGPNYIMPYHLQ 471
F Q P ++ G P PY Q
Sbjct: 528 PFPQGGLGMPAVQGGRPGQFPPYAQQ 553
Score = 66.6 bits (161), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 547 STLTSAL-ASASPDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEA 605
S L S L A+ +P + ++LGE L+P ++ ++P A K+TGMLLEMD E+++L+E A
Sbjct: 677 SLLQSQLTATNNPQQQKQILGENLFPKIQALQPDLAGKITGMLLEMDNAELVNLLEDEAA 736
Query: 606 LKTKVAEAMAVLQE 619
L KV EAMAV E
Sbjct: 737 LVAKVNEAMAVYDE 750
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 419 bits (1078), Expect = e-116, Method: Compositional matrix adjust.
Identities = 254/602 (42%), Positives = 354/602 (58%), Gaps = 46/602 (7%)
Query: 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86
+ SLYVG+L +VNE+ L+++FS + QV S+RVCRD + SLGYAYVNY +D A
Sbjct: 51 SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAI 110
Query: 87 EALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCK 146
E LN+ PI G+P RIM+S RDPS R+SG GN+FIKNL +IDNKAL DTF+AFG +LSCK
Sbjct: 111 EELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCK 170
Query: 147 VAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQ--QNVSP 204
VA D GQSK +GFV +E EAA+ AI+ +NGML+ND++V+VG + +++R + +
Sbjct: 171 VATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKA 230
Query: 205 KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAV 264
FTN+YV N+ ++E +K+F FG ITS + KD DGKS+ FGFVNF+ ++A AV
Sbjct: 231 NFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAV 290
Query: 265 EKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDE 324
E+LN N + YVGRAQK+ ER +L+ ++E R+ + K +G NL++KNLDD+I+ E
Sbjct: 291 EELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSE 350
Query: 325 KLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384
KL+E F FGTITS KVMVD+ G SKG GF F+ PEEAT+A+ EMN +MI KPLYVA+
Sbjct: 351 KLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVAL 410
Query: 385 AQRKEERKARLQAQFAQIRAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQA 444
AQRK+ R+++L+ Q + A G+PG + P ++YGQ G PP
Sbjct: 411 AQRKDVRRSQLEQQIQARNQMRMQNAAAGGLPGQF-----IPP--MFYGQ--QGFFPPNG 461
Query: 445 AGYGFQQQVFPGLRPGGPNYIMPYHLQRQVHPGQ--RTGVRRSGNTHQMQQPQFMRNSN- 501
G +P GPN M + Q P Q R G PQF ++ N
Sbjct: 462 RG----NAPYP-----GPNPQMMMRGRGQPFPEQWPRPGPNGQPVPVYGIPPQFQQDFNG 512
Query: 502 QGIRYLDNARNGTDQSVVSMVPVPFEVSGMPATPVETPRPVPVPISTLTSALASASPDDR 561
Q +R P + P L + ++S D +
Sbjct: 513 QNMR-------------------PQQQQQQQPRGGYYPNRNQTSKRDLAAIISSVPQDQQ 553
Query: 562 TRMLGEQLYPLV----ENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTKVAEAMAVL 617
R+LGE+LYP + + EP A K+TGM+L ++ E+L L++ E +A+
Sbjct: 554 KRILGEELYPKIVATGKAQEPEAAGKITGMMLGLENQEILDLLDDDELFNNHFEDALTAF 613
Query: 618 QE 619
+E
Sbjct: 614 EE 615
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 418 bits (1075), Expect = e-116, Method: Compositional matrix adjust.
Identities = 219/437 (50%), Positives = 296/437 (67%), Gaps = 19/437 (4%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
SLYVG+LE V+E+ LYD+FS + V S+RVCRD +SLGYAYVN+ + + A E
Sbjct: 39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQ 98
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LN+ I GKP RIM+S RDPS+RK G GN++IKNL +IDNK+L +TF+ FG +LSCKVA
Sbjct: 99 LNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVA 158
Query: 149 IDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQ--QNVSPKF 206
D NG S+G+GFV FENE A++AI+ ++GML+ND++VYV L V +++R + V KF
Sbjct: 159 TDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKF 218
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEK 266
TNVYV N+ + + E+ +++FG +G ITSA++ KDS+GK R FGFVNF+ AAA AV++
Sbjct: 219 TNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDE 278
Query: 267 LNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKL 326
LN + YVGRAQK+ ER +L+ ++E R+ + K +G NL++KNLDDSI+DEKL
Sbjct: 279 LNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKL 338
Query: 327 KELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386
KE F+ FGTITS KVM D+ G S+G GF FS PEEAT+A+ E N +++ KPLYVA+AQ
Sbjct: 339 KEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 398
Query: 387 RKEERKARLQAQFA---QIR---APGGMSPLASGIPG-------YHHGA-PRL---GPQQ 429
RKE R+ +L Q Q+R A + +G+PG Y+ G PR+ GP
Sbjct: 399 RKEVRRNQLAQQIQARNQMRFQHANAAAAAAVAGLPGQFMPPPMYYGGIPPRVPFQGPNP 458
Query: 430 LYYGQGTPGLMPPQAAG 446
G G MPPQ G
Sbjct: 459 QMAGMPKNGAMPPQQFG 475
Score = 37.7 bits (86), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 565 LGEQLYPLV--ENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTKVAEAMAVLQE 619
LGEQLY V + + A K+TGM+L++ +V+ L+E+ E L+ EA A Q+
Sbjct: 508 LGEQLYQKVFAKTQDDEAAGKITGMILDLPPQQVIQLLENDELLEQHFQEAHAAYQK 564
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 411 bits (1056), Expect = e-114, Method: Compositional matrix adjust.
Identities = 230/516 (44%), Positives = 305/516 (59%), Gaps = 75/516 (14%)
Query: 4 TGAAAATAAVTSATTAAVPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQ 63
T AA+ + TTAA + + SLYVG+L+ +V E+ L++LFS + QV S+RVCRD
Sbjct: 24 TNVPAASGDAPTPTTAAQQAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDA 83
Query: 64 SKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNL 123
R SLGYAYVNY++ +D A E LN+ I GKP RIM+S RDP++RK+G GNVFIKNL
Sbjct: 84 VTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNL 143
Query: 124 DTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLIND 183
D +IDNKAL DTFAAFG +LSCKVA D G SKGYGFV +E EAA NAIK +NGML+N+
Sbjct: 144 DHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNE 203
Query: 184 KQVYVGLFVRRQERAQ--QNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD 241
K+V+VG + ++ER + + FTN+YV N+ VTDED +++F G ITSA + +D
Sbjct: 204 KKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARD 263
Query: 242 SDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERI 301
GKSR FGFVN+ +AAA AV+ LN + YVGRAQK+ ERE +LR ++E R+
Sbjct: 264 DQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKKHEREEELRKQYEAARL 323
Query: 302 SRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMV------------------ 343
+ K +G NLY+KNL+D ++DEKL+++F+ FGTITS KV++
Sbjct: 324 EKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVILRDEEKKDEEEKEVKEEKK 383
Query: 344 ----------------DQHGFSKGSG-------------------FAAFSMPEEATRALN 368
+Q+G +G F FS P+EAT+A+
Sbjct: 384 EDEKKEDEEAKEGSSSEQNGEDTKAGDKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVT 443
Query: 369 EMNGKMIGRKPLYVAVAQRKEERKARLQAQFA---QIRAPGGMSPLASGIPGYHHGAPRL 425
EMN KMI KPLYVA+AQRK+ RK +L+A Q+R GIP
Sbjct: 444 EMNQKMIEGKPLYVALAQRKDVRKNQLEATIQARNQLRMQQQQQQQFGGIP--------- 494
Query: 426 GPQQLYYGQG-TPGLMPPQAAGYGFQQQVFPGLRPG 460
Q++ G P + PP A G Q FP PG
Sbjct: 495 ---QMFIAPGQQPMMYPPGARG----QMPFPAGMPG 523
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%)
Query: 551 SALASASPDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTKV 610
S L++A+P + +MLGE LYP + ++P A K+TGMLLEMD +E+++L AL+ KV
Sbjct: 653 SVLSAAAPGQQKQMLGEALYPKIHEMQPELAGKITGMLLEMDNSELINLTADESALRAKV 712
Query: 611 AEAMAVLQE 619
EAM+V E
Sbjct: 713 DEAMSVYDE 721
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 409 bits (1052), Expect = e-113, Method: Compositional matrix adjust.
Identities = 237/546 (43%), Positives = 317/546 (58%), Gaps = 73/546 (13%)
Query: 8 AATAAVTSATTAAVPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRS 67
A VT+ A S + SLYVG+L+ +V E+ LY+LFS + QV S+RVCRD R
Sbjct: 22 APAPEVTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRR 81
Query: 68 SLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSI 127
SLGYAYVNY++ A + LN+ I GKP RIM+S RDP++RK+G GNVFIKNLD++I
Sbjct: 82 SLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAI 141
Query: 128 DNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVY 187
DNKAL DTFAAFG +LSCKVA D G SKGYGFV +E EAA NAIK +NGML+NDK+V+
Sbjct: 142 DNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVF 201
Query: 188 VGLFVRRQERAQ--QNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGK 245
VG + +++R + + FTN+Y+ N+ V DE+ +K+F FG ITSA + +DS+GK
Sbjct: 202 VGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGK 261
Query: 246 SRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYE 305
SR FGFVNF + ++A AAVE++N + YVGRAQK+ ERE +LR ++E R+ +
Sbjct: 262 SRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKAS 321
Query: 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH------------------- 346
K +G NLY+KNL D ++D+KL+ELF +GTITS KVM D
Sbjct: 322 KYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAPVETATPESETKESANKEN 381
Query: 347 --------------------------------GFSKGSGFAAFSMPEEATRALNEMNGKM 374
G SKG GF FS P+EA++A+ EMN +M
Sbjct: 382 EKAAEGEKEPAAEEKEKEEKKEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRM 441
Query: 375 IGRKPLYVAVAQRKEERKARLQAQFAQIRAPGGMSPLASGIPGYHHGAPRLGPQQLYYGQ 434
+ KPLYVA+AQRK+ R+++L+A A+ G + AP ++YG
Sbjct: 442 VNGKPLYVALAQRKDVRRSQLEASIQARNNIRQQQAAAAAGMGQAYMAP-----AVFYGP 496
Query: 435 GTPGLMPPQAAGYGFQQQVFPGL---RPGGP-NYIMPYHLQRQVHPGQRTGVRRSGNTHQ 490
G G +P G F Q PG+ PG P Y P+ PGQ+ G R +Q
Sbjct: 497 GQQGFIPGAQRGGMFPPQ--PGMMMGMPGRPGQYPGPF-------PGQQGG--RGVGPNQ 545
Query: 491 MQQPQF 496
P F
Sbjct: 546 QIPPNF 551
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 54/77 (70%), Gaps = 1/77 (1%)
Query: 544 VPISTLTS-ALASASPDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIES 602
P+ LT+ AL++A P + +MLGE LYP ++ +P A K+TGMLLEMD TE+L L+E
Sbjct: 628 TPVGVLTAQALSAAPPQQQKQMLGEALYPKIQATQPELAGKITGMLLEMDNTELLGLLED 687
Query: 603 PEALKTKVAEAMAVLQE 619
EAL+ KV EA++V E
Sbjct: 688 DEALRAKVDEALSVYDE 704
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 399 bits (1025), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/390 (50%), Positives = 271/390 (69%), Gaps = 4/390 (1%)
Query: 12 AVTSATTAAVPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGY 71
A T + + +V + + SLYVGDLE +V+E+ LYD+FS + V S+RVCRD ++SLGY
Sbjct: 24 AATGSESQSVENS--SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGY 81
Query: 72 AYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKA 131
AYVN+++ + A E LN+ PI G+ RIM+S RDPS+RK G GN+FIKNL IDNKA
Sbjct: 82 AYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKA 141
Query: 132 LCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLF 191
L DTF+ FG +LS K+A D NG+SKG+GFV FE E AA+ AI LNGML+N +++YV
Sbjct: 142 LYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPH 201
Query: 192 VRRQERAQQ--NVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCF 249
+ R+ER Q +TN+YV N+ TDE +++F FG I SA + KD+DGK + F
Sbjct: 202 LSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGF 261
Query: 250 GFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKG 309
GFVN++ + A AVE LN + N + YVGRAQK+ ER L+ ++E R+ + K +G
Sbjct: 262 GFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQG 321
Query: 310 ANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNE 369
NL++KNLDDS++DEKL+E F+ +GTITS KVM ++G SKG GF FS PEEAT+A+ E
Sbjct: 322 VNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITE 381
Query: 370 MNGKMIGRKPLYVAVAQRKEERKARLQAQF 399
N +++ KPLYVA+AQRK+ R+++L Q
Sbjct: 382 KNQQIVAGKPLYVAIAQRKDVRRSQLAQQI 411
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 565 LGEQLYPLV--ENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTKVAEAMAVLQ 618
LGEQLY V + A K+TGM+L++ EV L+ES E + EA A +
Sbjct: 509 LGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAAYE 564
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 386 bits (991), Expect = e-106, Method: Compositional matrix adjust.
Identities = 185/372 (49%), Positives = 262/372 (70%), Gaps = 2/372 (0%)
Query: 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88
SLYVGDL+ +V+E+ LYD+FS + V S+RVCRD ++SLGYAYVN+++ A A E
Sbjct: 36 SLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEK 95
Query: 89 LNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVA 148
LNF PI GK RIM+S RDPS+RK G GN+FIKNL IDNKAL DTF+ FG +LS KVA
Sbjct: 96 LNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVA 155
Query: 149 IDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQ--QNVSPKF 206
D G+SKG+G+V FE +E+A AI LNGML+N +++YVG + ++ER + + F
Sbjct: 156 TDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFEEMKANF 215
Query: 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEK 266
TNVY+ N+ TD++ +++ FG S ++ + +G+++ FGFVNF + + A VE+
Sbjct: 216 TNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEE 275
Query: 267 LNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKL 326
LN T + YV RAQK+ ER+ +L+ ++E R+ + K +G NL++KNLDDSI+D+KL
Sbjct: 276 LNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDKKL 335
Query: 327 KELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386
+E F+ +GTITS KVM ++G SKG GF FS PEEAT+A+ E N +++ KPLYVA+AQ
Sbjct: 336 EEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 395
Query: 387 RKEERKARLQAQ 398
RK+ R+++L Q
Sbjct: 396 RKDVRRSQLAQQ 407
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 310 ANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALN 368
A+LY+ +LD S+++ L ++FS G ++S +V D S G + F+ + A A+
Sbjct: 35 ASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIE 94
Query: 369 EMNGKMIGRKPLYVAVAQR 387
++N I K + +QR
Sbjct: 95 KLNFTPIKGKLCRIMWSQR 113
Score = 33.1 bits (74), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 565 LGEQLYPLV---ENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTKVAEAMAVLQ 618
LGE+LY + N E A K+TGM+L++ EV+ L+E+ E + EA A +
Sbjct: 507 LGEELYKRIFSRTNDEEA-AGKITGMILDLPPQEVVPLLENDELFEQHFKEASAAYE 562
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 381 bits (979), Expect = e-105, Method: Compositional matrix adjust.
Identities = 184/341 (53%), Positives = 243/341 (71%), Gaps = 2/341 (0%)
Query: 6 AAAATAAVTSATTAAVPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSK 65
A A +TTA S + SLYVG+L+ +V E+ LY+LFS + QV S+RVCRD
Sbjct: 27 APAPEVTAVESTTAPNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVT 86
Query: 66 RSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDT 125
R SLGYAYVNY+N D A E LN+ I GKP RIM+S RDP++RK+G GNVFIKNLD+
Sbjct: 87 RRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDS 146
Query: 126 SIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQ 185
+IDNKAL DTFAAFG +LSCKVA D G SKGYGFV +E EAA NAIK +NGML+NDK+
Sbjct: 147 AIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKK 206
Query: 186 VYVGLFVRRQERAQ--QNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSD 243
V+VG + +++R + + FTNVY+ N+ + VT+E+ +++F FG ITSA + +D +
Sbjct: 207 VFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQE 266
Query: 244 GKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISR 303
GKSR FGFVNF + ++A AAV+++N + YVGRAQK+ ERE +LR ++E R+ +
Sbjct: 267 GKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEK 326
Query: 304 YEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD 344
K +G NLY+KNL D ++DEKL+ELF +GTITS KVM D
Sbjct: 327 ASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRD 367
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 158/290 (54%), Gaps = 19/290 (6%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
++++ LD S+ L + F++ G V S +V D+ +S GY +V + N + A++
Sbjct: 50 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 109
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITS 235
LN LI K + ++ +R ++ NV++ NL + ++ L F FG I S
Sbjct: 110 LNYTLIKGKPCRI-MWSQRDPALRKTGQ---GNVFIKNLDSAIDNKALHDTFAAFGNILS 165
Query: 236 AIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAK 295
V +D G S+ +GFV++++ +AA A++ +NG NDK +VG + +R+
Sbjct: 166 CKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQ------ 219
Query: 296 FEQERISRYEKLKG--ANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSG 353
S++E++K N+Y+KN+D + +E+ +ELF +FG ITS + DQ G S+G G
Sbjct: 220 ------SKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFG 273
Query: 354 FAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
F FS E A A++EMN K I + LYV AQ+K ER+ L+ Q+ R
Sbjct: 274 FVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAAR 323
Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 135/239 (56%), Gaps = 21/239 (8%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
+G GNV ++ +L+ ++ L+D F+ ++S +V +D+ S GY +V+Y + A
Sbjct: 134 TGQGNV--FIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSK-GYGFVHYETAEAA 190
Query: 83 ANAKEALNFMPINGKPIRIMY--SHRDPSIR----KSGYGNVFIKNLDTSIDNKALCDTF 136
NA + +N M +N K + + + S +D + K+ + NV+IKN+D + + + F
Sbjct: 191 NNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELF 250
Query: 137 AAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQE 196
FG + S ++ D G+S+G+GFV F E+AQ A+ +N I +++YVG ++ E
Sbjct: 251 EKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHE 310
Query: 197 RAQQ----------NVSPKF--TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSD 243
R ++ + K+ N+YV NL + V DE L+++FG +GTITSA VM+D++
Sbjct: 311 REEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDTN 369
Score = 105 bits (263), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 109/311 (35%), Positives = 151/311 (48%), Gaps = 45/311 (14%)
Query: 347 GFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQF-AQIRAP 405
G SKG GF FS P+EA++A+ EMN +M+ KPLYVA+AQRK+ R+++L+A A+
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIR 489
Query: 406 GGMSPLASGIPGYHHGAPRLGPQQLYYGQGTPGLMPPQAAGYGFQQQV------FPGLRP 459
+ A+G+P P + P ++YG G G +P Q G F Q PG RP
Sbjct: 490 QQQAAAAAGMP-----QPYMQPA-VFYGPGQQGFIPGQRGGIAFPPQPGMVMAGIPGGRP 543
Query: 460 G---------------GPNYIMPYHLQRQVHPGQRTGVRRSGNTHQ--MQQPQF------ 496
G GPN +P + Q + G G +G + M Q QF
Sbjct: 544 GQYPGPFPGQQGGRGMGPNQQLPPNFQ-GIPMGAMQGPVPNGMGYPQGMAQVQFGRGAGG 602
Query: 497 ------MRNSNQGIRYLDNARNGTDQSVVSMVPVPFEVS-GMPATPVETPRPVPVPISTL 549
M N QG+R + V P + G A RP L
Sbjct: 603 RGQVPGMPNMGQGMRGPGYGQGRGGVPVQQGQMRPGQGGRGQNAAQAPAGRPEEAVAGGL 662
Query: 550 TS-ALASASPDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKT 608
T+ AL++A P + +MLGE LYP ++ +P A K+TGMLLEM+ TE+L L+E EAL+
Sbjct: 663 TAQALSAAPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMENTELLSLLEDEEALRA 722
Query: 609 KVAEAMAVLQE 619
KV EA+ V E
Sbjct: 723 KVDEALNVYDE 733
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%)
Query: 244 GKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFE 297
GKS+ FGFV F SPD A+ AV ++N N K YV AQ++ R + L A +
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQ 483
Score = 40.4 bits (93), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 153 GQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQ 200
G+SKG+GFV F + + A A+ +N ++N K +YV L R+ R Q
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 477
Score = 33.1 bits (74), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 68 SLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRKS 113
S G+ +V +S+P +A+ A +N +NGKP+ + + R +R+S
Sbjct: 432 SKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK-DVRRS 476
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust.
Identities = 184/335 (54%), Positives = 241/335 (71%), Gaps = 2/335 (0%)
Query: 12 AVTSATTAAVPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGY 71
AV ++T A + + SLYVG+L+ +V E+ LY+LFS + QV S+RVCRD R SLGY
Sbjct: 38 AVENSTPAPAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGY 97
Query: 72 AYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKA 131
AYVNY+N D A E LN+ I GKP RIM+S RDP++RK+G GNVFIKNLD++IDNKA
Sbjct: 98 AYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKA 157
Query: 132 LCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLF 191
L DTFAAFG +LSCKVA D G SKGYGFV +E EAA NAIK +NGML+NDK+V+VG
Sbjct: 158 LHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHH 217
Query: 192 VRRQERAQ--QNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCF 249
+ +++R + + FTNVY+ NL + D++ +K+F FG ITSA + +D +GKSR F
Sbjct: 218 ISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGF 277
Query: 250 GFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKG 309
GFVNF + ++A AAVE++N + YVGRAQK+ ERE +LR ++E R+ + K +G
Sbjct: 278 GFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQG 337
Query: 310 ANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD 344
NLY+KNL D I+DEKL+ELF +GTITS KVM D
Sbjct: 338 VNLYVKNLTDDIDDEKLRELFGPYGTITSAKVMRD 372
Score = 219 bits (558), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 191/643 (29%), Positives = 303/643 (47%), Gaps = 117/643 (18%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
+G GNV ++ +L+ ++ L+D F+ ++S +V +D+ S GY +V+Y + A
Sbjct: 139 TGQGNV--FIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSK-GYGFVHYETAEAA 195
Query: 83 ANAKEALNFMPINGKPIRIMY--SHRDPSIR----KSGYGNVFIKNLDTSIDNKALCDTF 136
NA + +N M +N K + + + S +D + K+ + NV+IKNLD+ ID+ F
Sbjct: 196 NNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMF 255
Query: 137 AAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQE 196
FG + S ++ D G+S+G+GFV F E+AQ A++ +N I +++YVG ++ E
Sbjct: 256 EKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHE 315
Query: 197 RAQQ----------NVSPKF--TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDG 244
R ++ + K+ N+YV NL + + DE L+++FG +GTITSA VM+D++
Sbjct: 316 REEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSAKVMRDTNV 375
Query: 245 KSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRY 304
+ QSPD+A +K A++E D A E E+ +
Sbjct: 376 ERD-------QSPDSAGK--------------------EKEADKENDKEATPEAEKAEKA 408
Query: 305 EKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEAT 364
E+ + K+ + +D+K G SKG GF FS P+EA+
Sbjct: 409 EEKPSESSEEKDKEAKKSDKK-------------------PFGKSKGFGFVCFSSPDEAS 449
Query: 365 RALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQF-AQIRAPGGMSPLASGIPGYHHGAP 423
+A+ EMN +M+ KPLYVA+AQRK+ R+++L+A A+ + A+G+P P
Sbjct: 450 KAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMP-----QP 504
Query: 424 RLGPQQLYYGQGTPGLMPPQAAGYGFQQQV-----FPGLRPG---------------GPN 463
+ P ++YG G G +P G F Q PG RPG GPN
Sbjct: 505 YMQP-AVFYGPGQQGFIPGGQRGMAFPPQPGMVMGIPGGRPGQYPGPFPGQQGGRGMGPN 563
Query: 464 YIMPYHLQRQVHPGQR--TGVRRSGNTHQMQQPQFMRNS-----------NQGIRYLDNA 510
+P + + + G + G+ QM Q QF R + QG+R
Sbjct: 564 QQIPPNFAQGIPMGMQGPGGIPNGMGYPQMAQVQFGRGAGGRGQVPGMPMGQGMRGGPGY 623
Query: 511 RNGTDQSVVSMVPVPFEV-----SGMPATPVETPRPVPVPISTLTSALASASPDDRTRML 565
G V P + + PA P E L +A P + +ML
Sbjct: 624 GQGRGAPVQQGQMRPGQGGRGQNAAAPAGPQEG-----AAGGVNAQTLGAAPPAQQKQML 678
Query: 566 GEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKT 608
GE LYP ++ +P A K+TGMLLEMD TE+L L P A ++
Sbjct: 679 GEALYPKIQAQQPELAGKITGMLLEMDNTELLSLTRKPCAPRS 721
Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/299 (32%), Positives = 161/299 (53%), Gaps = 19/299 (6%)
Query: 108 PSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENE 166
P+ + ++++ LD S+ L + F++ G V S +V D+ +S GY +V + N
Sbjct: 46 PAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 167 EAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKI 226
+ A++ LN LI K + ++ +R ++ NV++ NL + ++ L
Sbjct: 106 ADGERALEDLNYTLIKGKPCRI-MWSQRDPALRKTGQ---GNVFIKNLDSAIDNKALHDT 161
Query: 227 FGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRA 286
F FG I S V +D G S+ +GFV++++ +AA A++ +NG NDK +VG +
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 221
Query: 287 EREADLRAKFEQERISRYEKLKG--ANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD 344
+R+ S++E++K N+Y+KNLD I+D++ +++F +FG ITS + D
Sbjct: 222 DRQ------------SKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRD 269
Query: 345 QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
Q G S+G GF FS E A A+ EMN K I + LYV AQ+K ER+ L+ Q+ R
Sbjct: 270 QEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAAR 328
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 378 bits (971), Expect = e-104, Method: Compositional matrix adjust.
Identities = 240/625 (38%), Positives = 351/625 (56%), Gaps = 49/625 (7%)
Query: 3 ATGAAAATAAVTSATTAAVPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRD 62
AT AA AA S++ ++ P SLYVGDL +V E LYD F++ + SVR+C+D
Sbjct: 2 ATVHAALHAADASSSGSSSPV---TASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKD 58
Query: 63 QSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKN 122
S SL Y Y N+ + QDA A E N +NGK IR+M+S R P R++G GNVF+KN
Sbjct: 59 ASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKN 118
Query: 123 LDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLIN 182
L S+ N L D F FG ++SCKVA +G+S+GYGFVQFE E+AA AI+ LN ++
Sbjct: 119 LPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVA 178
Query: 183 DKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS 242
DK++YVG F+++ +R + K+TN+Y+ NL V+++ L++ F FG I S + KD
Sbjct: 179 DKEIYVGKFMKKTDRVKP--EEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDE 236
Query: 243 DGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERIS 302
+ R + FVNF +P+ A A E +NGT K YVGRAQK+AERE LR +F+++
Sbjct: 237 NRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEE 296
Query: 303 RYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEE 362
+ K +N+Y+KN++ ++ +E+L++ FS+ GTITS K+M D+ G SKG GF FS PEE
Sbjct: 297 QKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEE 356
Query: 363 ATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRAPGGMSPLASGIPGYHHGA 422
A A+ +G+M KPLYVA+AQ+KE+RK +LQ QF S AS PG + A
Sbjct: 357 AIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSASVNPGTY--A 414
Query: 423 PRLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGPNYIMPYHLQRQVHPGQRTGV 482
P LYY PG++ Q +P L N I +P
Sbjct: 415 P------LYYTNTHPGMV----------YQSYP-LMWKSANMI------GSSYP------ 445
Query: 483 RRSGNTHQMQQPQFMRNSNQGIRYLDNARNGTDQSVVSMVPVPFEVSGMPATPVETPRPV 542
N+ + P + N+ R N D++ VS VP ++ + M + +
Sbjct: 446 ----NSEAVTYPPMVANAPSKNR--QNRIGKLDRNAVSYVPNVYQSTQMLPLSRDFSKQQ 499
Query: 543 PVPISTLTSALASASPDDRTRMLGEQL-------YPLVENIEPVHASKVTGMLLEMDQTE 595
+ + ++ +G ++ +PLVE +EP A+K+TGMLLEMD++E
Sbjct: 500 HSRTYGRGKEMKKSIQQRQSETVGMEMQLLGELLHPLVEKLEPQLANKITGMLLEMDKSE 559
Query: 596 VLHLIESPEALKTKVAEAMAVLQEA 620
+L L++SPE L +V EA VL+ +
Sbjct: 560 LLLLLKSPEDLAVRVDEAFEVLKSS 584
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 182/344 (52%), Positives = 242/344 (70%), Gaps = 5/344 (1%)
Query: 4 TGAAAATAAVTSATTAAVPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQ 63
TG TA T ++ A P + SLYVG+L+ +V E+ L++LFSQ+ V S+RVCRD
Sbjct: 39 TGEEIDTAGPTPSSAAPHPQA--SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDA 96
Query: 64 SKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNL 123
R SLGYAYVNY+ D A E LN+ I G+P RIM+S RDP++RK+G GNVFIKNL
Sbjct: 97 VTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNL 156
Query: 124 DTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLIND 183
D +IDNKAL DTFAAFG +LSCKVA D NG SKGYGFV +E +EAA AIK +NGML+N+
Sbjct: 157 DVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNE 216
Query: 184 KQVYVGLFVRRQERAQQ--NVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD 241
K+VYVG + +++R + + FTN+YV N+ VTD++ + +F +G +TS+ + +D
Sbjct: 217 KKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARD 276
Query: 242 SD-GKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQER 300
+ GKSR FGFVNF S + A+ AV++LN + + YVGRAQK+ ERE +LR +E R
Sbjct: 277 QETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAAR 336
Query: 301 ISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD 344
+ K +G NLY+KNLDD ++DEKL++LFSEFG ITS KVM D
Sbjct: 337 QEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRD 380
Score = 142 bits (358), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 158/291 (54%), Gaps = 20/291 (6%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
++++ LD S+ L + F+ G+V S +V D+ +S GY +V + + A++
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITS 235
LN LI + + ++ +R ++ NV++ NL + ++ L F FG I S
Sbjct: 122 LNYTLIKGRPCRI-MWSQRDPALRKTGQ---GNVFIKNLDVAIDNKALHDTFAAFGNILS 177
Query: 236 AIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAK 295
V +D +G S+ +GFV++++ +AA+ A++ +NG N+K YVG + +R+
Sbjct: 178 CKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQ------ 231
Query: 296 FEQERISRYEKLKG--ANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH-GFSKGS 352
S+++++K N+Y+KN++ + D++ + LF ++G +TS + DQ G S+G
Sbjct: 232 ------SKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGF 285
Query: 353 GFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
GF F+ E+A++A+ E+N K + LYV AQ+K ER+ L+ + R
Sbjct: 286 GFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAAR 336
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 157/338 (46%), Gaps = 73/338 (21%)
Query: 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDA 82
+G GNV ++ +L+ ++ L+D F+ ++S +V +D++ S GY +V+Y + A
Sbjct: 146 TGQGNV--FIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSK-GYGFVHYETDEAA 202
Query: 83 ANAKEALNFMPINGKPIRIMYSHRDPSIR--------KSGYGNVFIKNLDTSIDNKALCD 134
+ A + +N M +N K ++ H P K+ + N+++KN++ + +
Sbjct: 203 SQAIKHVNGMLLNEK--KVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRT 260
Query: 135 TFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVR 193
F +G V S +A D G+S+G+GFV F + E A A++ LN + + +YVG +
Sbjct: 261 LFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQK 320
Query: 194 RQER----------AQQNVSPKF--TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD 241
+ ER A+Q + K+ N+Y+ NL + V DE L+++F FG ITSA VM+D
Sbjct: 321 KHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRD 380
Query: 242 S------------------------------DGKSR-----------------CFGFVNF 254
S D K FGFV F
Sbjct: 381 SITEPGEEGESKEGEESEKNKENKPEEKEGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCF 440
Query: 255 QSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADL 292
+PD A AV ++N N+K YV AQ++ R+ L
Sbjct: 441 ANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQL 478
Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 139/318 (43%), Gaps = 66/318 (20%)
Query: 353 GFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERK--------ARLQAQFAQIRA 404
GF F+ P++AT+A+ EMN +M+ KPLYVA+AQRK+ RK AR Q + Q A
Sbjct: 436 GFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQLEQSIQARNQLRMQQAAA 495
Query: 405 PGGM------SPLASGIPGYHHG-APRLGPQQLYYGQG-------TPGLMPPQAAGYGFQ 450
GM +P+ G PG G P G + + Y QG PG P AG+ Q
Sbjct: 496 AAGMPQQYMQAPVFYG-PGSQPGFMPPAGGRGMPYPQGGMPMQPGRPGQFP---AGFAAQ 551
Query: 451 QQVFPGLRPGGPNYIMPYHLQRQVHPGQRTGVRRSGNTHQMQQPQF---MRNSNQGIRYL 507
Q G R P I P + G G Q PQF M+ Q
Sbjct: 552 Q----GGRGAMPQGIPPMY-------GLPGQFPPQGPFPQPNNPQFLAAMQQIQQSALAG 600
Query: 508 DNARNGTDQSVVSMVPVPFEV--SGMPATPVETPRPVPVPIST----------------- 548
+ VPVP +G+P P + P
Sbjct: 601 GRGGPAGRGPMQGGVPVPGMPGGAGLPGFPPNARQQGPGAGRGAAAGRAPAGAPAGARGA 660
Query: 549 -----LTSALASAS--PDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIE 601
L LA+ + P + ++LGE ++P ++ I P A K+TGMLLEMD TE++ L+E
Sbjct: 661 GAPEGLQGQLAAVADNPGQQKQILGEAIFPKIQAIHPELAGKITGMLLEMDNTELVALVE 720
Query: 602 SPEALKTKVAEAMAVLQE 619
+ AL++KV EA+AV +
Sbjct: 721 NDGALRSKVDEALAVYDD 738
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/369 (50%), Positives = 249/369 (67%), Gaps = 4/369 (1%)
Query: 21 VPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQ 80
V + Y SLYVGDL +V E L+ FS V V+S+R+CRDQ R SLGYAYVN+
Sbjct: 3 VAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLA 62
Query: 81 DAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFG 140
DA A + +NF I GK IR+M+S RD +R+SG GNVFIKNLD SIDNK L + F+AFG
Sbjct: 63 DAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFG 122
Query: 141 TVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQ 200
+LS KV D G SKGY FV F+N+ AA AI+ +NG L+ +V+VG F R++R +
Sbjct: 123 KILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAE 181
Query: 201 --NVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPD 258
+ + +FTNVY+ N + DE LK +F +G S VM DS GKS+ FGFV+F S +
Sbjct: 182 LRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHE 241
Query: 259 AAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLD 318
AA AVE++NG N ++ +VGRAQK+ ER+A+L+ FEQ + R +G LY+KNLD
Sbjct: 242 AAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLD 301
Query: 319 DSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRK 378
D+I+DEKL+ FS FG+I+ KVM + G SKG G FS PE+AT+A+ EMNG+++G K
Sbjct: 302 DTIDDEKLRNEFSSFGSISRVKVM-QEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSK 360
Query: 379 PLYVAVAQR 387
PL +A+AQR
Sbjct: 361 PLSIALAQR 369
Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 160/288 (55%), Gaps = 16/288 (5%)
Query: 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175
++++ +L + L F+ G VLS ++ D +S GY +V F AQ A+
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 176 LNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITS 235
+N +I K + + ++ +R ++ NV++ NL +++ ++ L + F FG I S
Sbjct: 71 MNFDIIKGKSIRL-MWSQRDAYLRR---SGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 126
Query: 236 AIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAK 295
+ VM D G S+ + FV+FQ+ AA A+E++NG +VGR + R +REA+LR+K
Sbjct: 127 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 185
Query: 296 FEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFA 355
+ N+Y+KN ++DE+LK++FS++G S KVM D G SKG GF
Sbjct: 186 ASE----------FTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 235
Query: 356 AFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIR 403
+F E A +A+ EMNG+ I + ++V AQ+K ER+A L+ F Q++
Sbjct: 236 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 283
>sp|P60050|PABP5_PONPY Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3
SV=1
Length = 382
Score = 323 bits (827), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 176/358 (49%), Positives = 240/358 (67%), Gaps = 5/358 (1%)
Query: 32 VGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNF 91
VGDL+ +V E LY F + R+CRD RS LGY YVN+ P DA A +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 MPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS 151
INGKP R+M+S D +RKSG GN+FIKNLD SIDN+AL F+AFG +LSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 152 NGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVS---PKFTN 208
NG SKGY +V F++ AA AI +NG+ +N++QVYVG F +ERA + + FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLN 268
V+V N+ + + DE LK++F +G S V++D+ GKS+ FGFV +++ +AA AV L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 269 GTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKE 328
G + + KV YVGRAQK+ ER A+LR +FE+ R+ + G +Y+KNLD++INDEKLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 329 LFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386
FS FG+I+ KVM+ + G KG G FS EEAT+A++EMNG+++G KPL+V + Q
Sbjct: 321 EFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 148/275 (53%), Gaps = 15/275 (5%)
Query: 120 IKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSK-GYGFVQFENEEAAQNAIKMLNG 178
+ +LD + L F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 179 MLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIV 238
LIN K + ++ + +R +++ N+++ NL +++ + L +F FG I S V
Sbjct: 82 DLINGKPFRL-MWSQPDDRLRKS---GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 239 MKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQ 298
+ D +G S+ + +V+F S AA A+ +NG N++ YVGR + ER A++R +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 299 ERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFS 358
++ N+++KN+ D I+DEKLKELF E+G S KV+ D G SKG GF +
Sbjct: 194 ------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 359 MPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKA 393
E A +A+ +++GK I K LYV AQ+K ER A
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>sp|P60049|PABP5_PANTR Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3
SV=1
Length = 382
Score = 323 bits (827), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 176/358 (49%), Positives = 240/358 (67%), Gaps = 5/358 (1%)
Query: 32 VGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNF 91
VGDL+ +V E LY F + R+CRD RS LGY YVN+ P DA A +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 MPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS 151
INGKP R+M+S D +RKSG GN+FIKNLD SIDN+AL F+AFG +LSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 152 NGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVS---PKFTN 208
NG SKGY +V F++ AA AI +NG+ +N++QVYVG F +ERA + + FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLN 268
V+V N+ + + DE LK++F +G S V++D+ GKS+ FGFV +++ +AA AV L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 269 GTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKE 328
G + + KV YVGRAQK+ ER A+LR +FE+ R+ + G +Y+KNLD++INDEKLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 329 LFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386
FS FG+I+ KVM+ + G KG G FS EEAT+A++EMNG+++G KPL+V + Q
Sbjct: 321 EFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 148/275 (53%), Gaps = 15/275 (5%)
Query: 120 IKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSK-GYGFVQFENEEAAQNAIKMLNG 178
+ +LD + L F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 179 MLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIV 238
LIN K + ++ + +R +++ N+++ NL +++ + L +F FG I S V
Sbjct: 82 DLINGKPFRL-MWSQPDDRLRKS---GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 239 MKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQ 298
+ D +G S+ + +V+F S AA A+ +NG N++ YVGR + ER A++R +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 299 ERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFS 358
++ N+++KN+ D I+DEKLKELF E+G S KV+ D G SKG GF +
Sbjct: 194 ------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 359 MPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKA 393
E A +A+ +++GK I K LYV AQ+K ER A
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>sp|P60048|PABP5_HYLLA Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3
SV=1
Length = 382
Score = 323 bits (827), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 176/358 (49%), Positives = 240/358 (67%), Gaps = 5/358 (1%)
Query: 32 VGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNF 91
VGDL+ +V E LY F + R+CRD RS LGY YVN+ P DA A +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 MPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS 151
INGKP R+M+S D +RKSG GN+FIKNLD SIDN+AL F+AFG +LSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 152 NGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVS---PKFTN 208
NG SKGY +V F++ AA AI +NG+ +N++QVYVG F +ERA + + FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLN 268
V+V N+ + + DE LK++F +G S V++D+ GKS+ FGFV +++ +AA AV L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 269 GTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKE 328
G + + KV YVGRAQK+ ER A+LR +FE+ R+ + G +Y+KNLD++INDEKLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 329 LFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386
FS FG+I+ KVM+ + G KG G FS EEAT+A++EMNG+++G KPL+V + Q
Sbjct: 321 EFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 148/275 (53%), Gaps = 15/275 (5%)
Query: 120 IKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSK-GYGFVQFENEEAAQNAIKMLNG 178
+ +LD + L F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 179 MLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIV 238
LIN K + ++ + +R +++ N+++ NL +++ + L +F FG I S V
Sbjct: 82 DLINGKPFRL-MWSQPDDRLRKS---GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 239 MKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQ 298
+ D +G S+ + +V+F S AA A+ +NG N++ YVGR + ER A++R +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 299 ERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFS 358
++ N+++KN+ D I+DEKLKELF E+G S KV+ D G SKG GF +
Sbjct: 194 ------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 359 MPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKA 393
E A +A+ +++GK I K LYV AQ+K ER A
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>sp|Q96DU9|PABP5_HUMAN Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=2 SV=1
Length = 382
Score = 323 bits (827), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 176/358 (49%), Positives = 240/358 (67%), Gaps = 5/358 (1%)
Query: 32 VGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNF 91
VGDL+ +V E LY F + R+CRD RS LGY YVN+ P DA A +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 92 MPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS 151
INGKP R+M+S D +RKSG GN+FIKNLD SIDN+AL F+AFG +LSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 152 NGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVS---PKFTN 208
NG SKGY +V F++ AA AI +NG+ +N++QVYVG F +ERA + + FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLN 268
V+V N+ + + DE LK++F +G S V++D+ GKS+ FGFV +++ +AA AV L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 269 GTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKE 328
G + + KV YVGRAQK+ ER A+LR +FE+ R+ + G +Y+KNLD++INDEKLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 329 LFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386
FS FG+I+ KVM+ + G KG G FS EEAT+A++EMNG+++G KPL+V + Q
Sbjct: 321 EFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 148/275 (53%), Gaps = 15/275 (5%)
Query: 120 IKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSK-GYGFVQFENEEAAQNAIKMLNG 178
+ +LD + L F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 179 MLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIV 238
LIN K + ++ + +R +++ N+++ NL +++ + L +F FG I S V
Sbjct: 82 DLINGKPFRL-MWSQPDDRLRKS---GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 239 MKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQ 298
+ D +G S+ + +V+F S AA A+ +NG N++ YVGR + ER A++R +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 299 ERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFS 358
++ N+++KN+ D I+DEKLKELF E+G S KV+ D G SKG GF +
Sbjct: 194 ------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 359 MPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKA 393
E A +A+ +++GK I K LYV AQ+K ER A
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 235,961,562
Number of Sequences: 539616
Number of extensions: 10580400
Number of successful extensions: 41823
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 399
Number of HSP's that attempted gapping in prelim test: 35186
Number of HSP's gapped (non-prelim): 4111
length of query: 637
length of database: 191,569,459
effective HSP length: 124
effective length of query: 513
effective length of database: 124,657,075
effective search space: 63949079475
effective search space used: 63949079475
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)