Query 006641
Match_columns 637
No_of_seqs 441 out of 3152
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 12:22:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006641.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006641hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01628 PABP-1234 polyadenyl 100.0 1.3E-98 3E-103 839.0 58.1 557 28-618 1-562 (562)
2 KOG0123 Polyadenylate-binding 100.0 7.4E-61 1.6E-65 494.3 31.3 360 28-402 2-363 (369)
3 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 8.8E-50 1.9E-54 434.5 35.0 349 26-388 1-480 (481)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 8.7E-45 1.9E-49 383.4 25.3 341 26-390 2-351 (352)
5 KOG0117 Heterogeneous nuclear 100.0 5.1E-41 1.1E-45 332.8 35.9 284 74-394 39-337 (506)
6 KOG0145 RNA-binding protein EL 100.0 9.5E-41 2.1E-45 308.3 23.8 314 23-388 37-358 (360)
7 TIGR01648 hnRNP-R-Q heterogene 100.0 5.2E-40 1.1E-44 353.8 32.6 281 78-390 18-309 (578)
8 TIGR01628 PABP-1234 polyadenyl 100.0 7.4E-39 1.6E-43 357.8 42.8 267 26-293 87-372 (562)
9 TIGR01648 hnRNP-R-Q heterogene 100.0 8.8E-40 1.9E-44 352.1 26.8 297 23-336 54-368 (578)
10 KOG0117 Heterogeneous nuclear 100.0 1.9E-37 4.1E-42 307.5 23.6 252 20-287 76-333 (506)
11 KOG0127 Nucleolar protein fibr 100.0 2.5E-36 5.3E-41 305.7 29.1 343 28-370 6-516 (678)
12 KOG0148 Apoptosis-promoting RN 100.0 4.1E-37 8.8E-42 286.6 19.1 234 114-389 5-239 (321)
13 KOG0144 RNA-binding protein CU 100.0 9.2E-37 2E-41 301.1 18.8 359 23-388 30-504 (510)
14 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2E-35 4.4E-40 321.9 26.9 262 115-388 2-351 (481)
15 TIGR01622 SF-CC1 splicing fact 100.0 4.7E-35 1E-39 319.8 29.9 341 23-389 85-449 (457)
16 TIGR01645 half-pint poly-U bin 100.0 4.6E-35 9.9E-40 315.7 27.8 168 26-193 106-283 (612)
17 KOG0148 Apoptosis-promoting RN 100.0 1.3E-33 2.7E-38 263.3 19.2 219 26-284 5-237 (321)
18 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.2E-32 2.6E-37 305.2 29.1 255 23-284 171-501 (509)
19 KOG0127 Nucleolar protein fibr 100.0 2.2E-33 4.7E-38 284.4 20.3 278 116-393 6-383 (678)
20 KOG0123 Polyadenylate-binding 100.0 3E-32 6.4E-37 281.8 23.2 254 117-398 3-256 (369)
21 TIGR01642 U2AF_lg U2 snRNP aux 100.0 3.4E-32 7.5E-37 301.5 24.8 268 114-388 174-502 (509)
22 TIGR01659 sex-lethal sex-letha 100.0 7.9E-31 1.7E-35 270.0 22.7 169 203-389 104-276 (346)
23 TIGR01659 sex-lethal sex-letha 100.0 2.2E-30 4.8E-35 266.7 22.8 169 23-193 103-274 (346)
24 KOG0110 RNA-binding protein (R 100.0 4.8E-31 1E-35 276.5 16.6 328 26-390 226-695 (725)
25 smart00517 PolyA C-terminal do 100.0 1.8E-30 3.8E-35 192.3 4.4 64 557-620 1-64 (64)
26 KOG4212 RNA-binding protein hn 100.0 7.6E-28 1.7E-32 237.7 19.9 236 23-271 40-280 (608)
27 TIGR01645 half-pint poly-U bin 100.0 1.5E-27 3.3E-32 257.6 17.4 178 204-388 105-284 (612)
28 KOG0144 RNA-binding protein CU 100.0 1.5E-27 3.3E-32 236.1 15.8 173 204-393 32-211 (510)
29 KOG1190 Polypyrimidine tract-b 99.9 1.2E-25 2.5E-30 221.2 22.5 350 22-387 23-490 (492)
30 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1.2E-25 2.5E-30 237.5 21.4 170 26-195 88-350 (352)
31 KOG0131 Splicing factor 3b, su 99.9 1.5E-26 3.3E-31 204.3 11.8 171 26-197 8-180 (203)
32 KOG0124 Polypyrimidine tract-b 99.9 8.5E-26 1.9E-30 218.5 17.1 271 116-386 114-533 (544)
33 KOG0110 RNA-binding protein (R 99.9 2.3E-25 5E-30 234.0 19.9 262 23-290 381-698 (725)
34 PF00658 PABP: Poly-adenylate 99.9 2.5E-27 5.3E-32 183.1 2.9 70 548-617 3-72 (72)
35 KOG0147 Transcriptional coacti 99.9 8.4E-25 1.8E-29 224.1 13.8 329 23-388 175-528 (549)
36 TIGR01622 SF-CC1 splicing fact 99.9 3.4E-24 7.5E-29 234.3 18.6 177 205-388 88-266 (457)
37 KOG0124 Polypyrimidine tract-b 99.9 6.4E-24 1.4E-28 205.6 17.9 253 27-279 113-529 (544)
38 KOG0145 RNA-binding protein EL 99.9 3.4E-24 7.4E-29 198.8 13.4 170 204-391 39-212 (360)
39 KOG0131 Splicing factor 3b, su 99.9 4.4E-23 9.4E-28 182.5 10.6 168 205-389 8-178 (203)
40 KOG0146 RNA-binding protein ET 99.9 1.5E-22 3.3E-27 188.6 10.6 187 205-391 18-368 (371)
41 KOG1456 Heterogeneous nuclear 99.9 5.1E-20 1.1E-24 179.4 25.7 339 24-377 28-474 (494)
42 KOG0109 RNA-binding protein LA 99.9 3.9E-22 8.5E-27 188.5 9.7 148 207-388 3-150 (346)
43 KOG4205 RNA-binding protein mu 99.9 4.2E-21 9E-26 191.6 15.8 175 205-393 5-181 (311)
44 KOG0109 RNA-binding protein LA 99.8 2.8E-21 6.1E-26 182.7 10.6 148 28-194 3-150 (346)
45 KOG4212 RNA-binding protein hn 99.8 4.5E-20 9.8E-25 183.0 13.0 247 116-386 45-292 (608)
46 KOG4211 Splicing factor hnRNP- 99.8 1.5E-18 3.2E-23 176.1 24.1 263 116-384 11-354 (510)
47 KOG4211 Splicing factor hnRNP- 99.8 8.3E-19 1.8E-23 177.9 20.3 337 25-369 8-491 (510)
48 KOG0146 RNA-binding protein ET 99.8 1.5E-18 3.2E-23 162.1 11.6 188 96-285 2-365 (371)
49 KOG0147 Transcriptional coacti 99.7 1.9E-18 4.1E-23 177.7 8.7 179 205-388 178-358 (549)
50 PLN03134 glycine-rich RNA-bind 99.7 1.7E-17 3.7E-22 149.9 13.0 82 307-388 32-114 (144)
51 KOG4205 RNA-binding protein mu 99.7 7.4E-18 1.6E-22 168.4 11.5 170 26-197 5-179 (311)
52 KOG0105 Alternative splicing f 99.7 3.7E-17 8E-22 144.8 14.0 148 23-180 2-174 (241)
53 KOG0120 Splicing factor U2AF, 99.7 1.6E-16 3.6E-21 166.1 16.2 256 21-283 169-490 (500)
54 KOG1190 Polypyrimidine tract-b 99.7 2.4E-15 5.3E-20 148.9 22.1 246 28-284 151-490 (492)
55 KOG4206 Spliceosomal protein s 99.7 4.4E-16 9.5E-21 144.2 15.3 157 27-190 9-218 (221)
56 PLN03134 glycine-rich RNA-bind 99.7 3.1E-16 6.7E-21 141.7 12.0 86 24-109 31-116 (144)
57 KOG1365 RNA-binding protein Fu 99.6 3.2E-14 6.8E-19 139.7 20.7 293 97-392 40-366 (508)
58 KOG0120 Splicing factor U2AF, 99.6 1.6E-15 3.5E-20 158.7 11.6 267 116-388 176-492 (500)
59 KOG4206 Spliceosomal protein s 99.6 1.4E-14 2.9E-19 134.4 12.1 174 207-386 10-220 (221)
60 KOG1456 Heterogeneous nuclear 99.6 5.1E-13 1.1E-17 130.9 23.6 242 23-274 116-474 (494)
61 PF00076 RRM_1: RNA recognitio 99.6 9.4E-15 2E-19 115.5 9.4 70 312-381 1-70 (70)
62 KOG0149 Predicted RNA-binding 99.6 4.9E-15 1.1E-19 137.4 6.3 79 308-387 11-90 (247)
63 KOG1548 Transcription elongati 99.5 1.5E-13 3.2E-18 134.0 16.2 182 204-388 132-352 (382)
64 PF00076 RRM_1: RNA recognitio 99.5 2.3E-14 5E-19 113.2 8.4 70 30-100 1-70 (70)
65 KOG0105 Alternative splicing f 99.5 8.1E-14 1.8E-18 123.8 11.8 170 205-383 5-185 (241)
66 KOG0125 Ataxin 2-binding prote 99.5 2.1E-14 4.5E-19 138.8 6.6 80 308-388 95-174 (376)
67 KOG0122 Translation initiation 99.5 6.4E-14 1.4E-18 130.3 9.0 82 26-107 188-269 (270)
68 PF14259 RRM_6: RNA recognitio 99.5 1.6E-13 3.5E-18 108.5 9.1 70 312-381 1-70 (70)
69 KOG0121 Nuclear cap-binding pr 99.5 7.6E-14 1.7E-18 116.6 7.2 83 24-106 33-115 (153)
70 KOG1457 RNA binding protein (c 99.5 9.2E-13 2E-17 120.7 14.7 230 112-375 31-273 (284)
71 KOG0122 Translation initiation 99.5 1.3E-13 2.9E-18 128.2 8.4 82 307-388 187-269 (270)
72 KOG0106 Alternative splicing f 99.5 2.6E-14 5.6E-19 134.2 3.6 166 207-387 2-170 (216)
73 KOG0107 Alternative splicing f 99.5 1.9E-13 4.1E-18 120.9 8.2 79 26-109 9-87 (195)
74 KOG1457 RNA binding protein (c 99.5 1.5E-12 3.2E-17 119.3 14.3 153 26-181 33-273 (284)
75 PLN03120 nucleic acid binding 99.4 3E-13 6.6E-18 130.4 9.7 75 309-386 4-78 (260)
76 KOG0114 Predicted RNA-binding 99.4 5.1E-13 1.1E-17 107.5 9.1 88 18-108 9-96 (124)
77 PF14259 RRM_6: RNA recognitio 99.4 4.7E-13 1E-17 105.8 7.9 70 30-100 1-70 (70)
78 COG0724 RNA-binding proteins ( 99.4 2.2E-12 4.8E-17 131.1 13.7 125 27-151 115-261 (306)
79 KOG1365 RNA-binding protein Fu 99.4 4.2E-12 9.2E-17 124.9 14.3 248 25-275 58-352 (508)
80 KOG0106 Alternative splicing f 99.4 6E-13 1.3E-17 125.0 7.2 148 28-190 2-167 (216)
81 PLN03120 nucleic acid binding 99.4 1.7E-12 3.6E-17 125.3 10.1 76 27-106 4-79 (260)
82 KOG4207 Predicted splicing fac 99.4 4.2E-13 9.1E-18 121.5 5.6 78 309-386 13-91 (256)
83 KOG0107 Alternative splicing f 99.4 8.5E-13 1.8E-17 116.8 7.1 77 308-388 9-85 (195)
84 KOG0126 Predicted RNA-binding 99.4 6.1E-14 1.3E-18 124.4 -0.3 78 26-103 34-111 (219)
85 KOG0149 Predicted RNA-binding 99.4 1.2E-12 2.6E-17 121.6 7.5 77 27-104 12-88 (247)
86 KOG4307 RNA binding protein RB 99.4 1.3E-11 2.7E-16 130.0 15.4 164 26-191 310-511 (944)
87 smart00362 RRM_2 RNA recogniti 99.4 4E-12 8.8E-17 100.2 9.2 72 311-383 1-72 (72)
88 KOG1548 Transcription elongati 99.4 1.8E-11 3.9E-16 119.6 15.3 168 115-285 134-352 (382)
89 PLN03121 nucleic acid binding 99.3 3.1E-12 6.8E-17 121.3 9.4 76 308-386 4-79 (243)
90 PLN03213 repressor of silencin 99.3 2.3E-12 4.9E-17 130.5 8.7 78 308-388 9-88 (759)
91 KOG0128 RNA-binding protein SA 99.3 1E-14 2.2E-19 157.2 -9.7 322 27-387 479-814 (881)
92 KOG0126 Predicted RNA-binding 99.3 2.3E-13 5.1E-18 120.8 -0.5 77 308-384 34-111 (219)
93 KOG0130 RNA-binding protein RB 99.3 3.6E-12 7.9E-17 107.6 6.3 81 27-107 72-152 (170)
94 KOG0114 Predicted RNA-binding 99.3 1.4E-11 3E-16 99.3 9.3 82 309-392 18-99 (124)
95 KOG0113 U1 small nuclear ribon 99.3 7.3E-12 1.6E-16 119.9 8.9 82 307-388 99-181 (335)
96 smart00360 RRM RNA recognition 99.3 1.7E-11 3.7E-16 96.2 9.0 70 314-383 1-71 (71)
97 COG0724 RNA-binding proteins ( 99.3 1.4E-11 3E-16 125.3 10.5 164 206-369 115-286 (306)
98 KOG0113 U1 small nuclear ribon 99.3 1.5E-11 3.2E-16 117.8 9.8 85 20-104 94-178 (335)
99 KOG0111 Cyclophilin-type pepti 99.3 1.7E-12 3.8E-17 118.5 3.1 82 308-389 9-91 (298)
100 smart00362 RRM_2 RNA recogniti 99.3 1.9E-11 4E-16 96.4 8.6 71 29-101 1-71 (72)
101 cd00590 RRM RRM (RNA recogniti 99.3 3.6E-11 7.7E-16 95.3 9.8 74 311-384 1-74 (74)
102 KOG4660 Protein Mei2, essentia 99.3 3.6E-11 7.8E-16 124.9 12.2 155 24-190 72-246 (549)
103 PLN03121 nucleic acid binding 99.3 2.4E-11 5.2E-16 115.3 10.0 76 26-105 4-79 (243)
104 KOG0125 Ataxin 2-binding prote 99.3 1.7E-11 3.7E-16 118.8 9.1 83 21-105 90-172 (376)
105 smart00360 RRM RNA recognition 99.3 2.4E-11 5.1E-16 95.4 8.4 70 32-101 1-70 (71)
106 KOG0121 Nuclear cap-binding pr 99.2 1.2E-11 2.6E-16 103.7 6.1 82 307-388 34-116 (153)
107 KOG0108 mRNA cleavage and poly 99.2 1.9E-11 4E-16 128.1 9.0 82 28-109 19-100 (435)
108 PLN03213 repressor of silencin 99.2 2.6E-11 5.6E-16 123.0 9.1 77 26-106 9-87 (759)
109 PF13893 RRM_5: RNA recognitio 99.2 5.1E-11 1.1E-15 89.5 8.4 56 326-385 1-56 (56)
110 KOG4207 Predicted splicing fac 99.2 1.7E-11 3.7E-16 111.2 6.6 82 25-106 11-92 (256)
111 cd00590 RRM RRM (RNA recogniti 99.2 7.5E-11 1.6E-15 93.4 9.2 74 29-103 1-74 (74)
112 KOG4307 RNA binding protein RB 99.2 3.8E-10 8.3E-15 119.0 16.4 167 118-286 314-515 (944)
113 KOG0108 mRNA cleavage and poly 99.2 3.6E-11 7.8E-16 125.9 8.4 82 310-391 19-101 (435)
114 smart00361 RRM_1 RNA recogniti 99.2 1.1E-10 2.4E-15 92.0 8.1 61 323-383 2-70 (70)
115 KOG0132 RNA polymerase II C-te 99.2 2.7E-09 5.8E-14 114.5 20.4 79 308-391 420-498 (894)
116 KOG0130 RNA-binding protein RB 99.2 4.2E-11 9.1E-16 101.2 5.5 83 306-388 69-152 (170)
117 KOG0111 Cyclophilin-type pepti 99.2 3.9E-11 8.5E-16 109.7 5.5 84 25-108 8-91 (298)
118 KOG0226 RNA-binding proteins [ 99.1 4.8E-11 1E-15 111.9 4.5 171 207-389 97-271 (290)
119 PF13893 RRM_5: RNA recognitio 99.1 1.7E-10 3.7E-15 86.6 6.7 56 44-104 1-56 (56)
120 KOG4454 RNA binding protein (R 99.1 2.1E-11 4.6E-16 111.6 1.9 154 22-188 4-157 (267)
121 KOG0415 Predicted peptidyl pro 99.1 1.4E-10 3.1E-15 113.2 6.1 84 23-106 235-318 (479)
122 KOG0129 Predicted RNA-binding 99.1 2.9E-09 6.4E-14 109.9 15.4 167 25-192 257-452 (520)
123 KOG0128 RNA-binding protein SA 99.0 2.9E-11 6.3E-16 130.9 -0.8 229 25-277 569-807 (881)
124 smart00361 RRM_1 RNA recogniti 99.0 8E-10 1.7E-14 87.1 7.3 61 41-101 2-69 (70)
125 KOG0415 Predicted peptidyl pro 99.0 7.4E-10 1.6E-14 108.3 5.8 84 306-389 236-320 (479)
126 KOG4849 mRNA cleavage factor I 98.9 6.5E-08 1.4E-12 94.6 17.8 76 310-385 81-159 (498)
127 KOG4208 Nucleolar RNA-binding 98.9 2.9E-09 6.2E-14 97.5 7.8 83 25-107 47-130 (214)
128 KOG4454 RNA binding protein (R 98.9 5.1E-10 1.1E-14 102.7 1.9 136 205-372 8-147 (267)
129 KOG0153 Predicted RNA-binding 98.9 3.2E-09 6.9E-14 104.2 7.3 80 303-387 222-302 (377)
130 KOG0153 Predicted RNA-binding 98.9 4.8E-09 1E-13 103.0 8.2 82 19-106 220-302 (377)
131 KOG0226 RNA-binding proteins [ 98.8 3.9E-09 8.5E-14 99.2 5.9 166 25-191 94-267 (290)
132 KOG0116 RasGAP SH3 binding pro 98.8 1E-08 2.3E-13 106.9 8.9 79 309-388 288-367 (419)
133 KOG0132 RNA polymerase II C-te 98.8 7.4E-09 1.6E-13 111.2 7.7 73 27-105 421-493 (894)
134 KOG4208 Nucleolar RNA-binding 98.8 1.6E-08 3.4E-13 92.8 7.0 80 309-388 49-130 (214)
135 KOG0129 Predicted RNA-binding 98.7 5.9E-08 1.3E-12 100.5 9.9 160 204-369 257-432 (520)
136 KOG4210 Nuclear localization s 98.7 1.1E-08 2.4E-13 102.7 3.4 175 205-388 87-264 (285)
137 PF04059 RRM_2: RNA recognitio 98.7 1.2E-07 2.6E-12 78.4 8.9 78 28-105 2-85 (97)
138 KOG0533 RRM motif-containing p 98.6 7E-08 1.5E-12 93.3 7.7 81 309-389 83-163 (243)
139 KOG0112 Large RNA-binding prot 98.6 2.4E-08 5.2E-13 109.2 3.8 159 206-389 372-532 (975)
140 KOG4661 Hsp27-ERE-TATA-binding 98.6 7.3E-08 1.6E-12 99.8 7.0 80 307-386 403-483 (940)
141 KOG4661 Hsp27-ERE-TATA-binding 98.6 1.5E-07 3.3E-12 97.4 8.5 82 27-108 405-486 (940)
142 KOG0151 Predicted splicing reg 98.6 1.2E-07 2.6E-12 101.0 7.9 81 26-106 173-256 (877)
143 KOG4210 Nuclear localization s 98.5 1E-07 2.2E-12 95.8 5.2 169 25-194 86-264 (285)
144 KOG0112 Large RNA-binding prot 98.5 7.7E-08 1.7E-12 105.3 4.2 161 22-192 367-529 (975)
145 KOG0533 RRM motif-containing p 98.4 6.6E-07 1.4E-11 86.6 8.1 80 26-106 82-161 (243)
146 KOG4209 Splicing factor RNPS1, 98.4 3.7E-07 8.1E-12 88.7 5.3 82 23-105 97-178 (231)
147 PF04059 RRM_2: RNA recognitio 98.4 2.2E-06 4.7E-11 71.0 8.5 79 310-388 2-87 (97)
148 KOG0116 RasGAP SH3 binding pro 98.3 1.1E-06 2.5E-11 91.8 8.2 79 26-105 287-365 (419)
149 KOG4209 Splicing factor RNPS1, 98.3 9.8E-07 2.1E-11 85.7 5.1 82 306-388 98-180 (231)
150 KOG0151 Predicted splicing reg 98.2 2.6E-06 5.6E-11 91.1 6.1 82 306-387 171-256 (877)
151 KOG2193 IGF-II mRNA-binding pr 98.1 3.6E-07 7.7E-12 91.8 -1.0 153 28-193 2-156 (584)
152 KOG4676 Splicing factor, argin 98.1 6.3E-07 1.4E-11 89.3 -1.0 214 115-386 7-224 (479)
153 KOG4660 Protein Mei2, essentia 98.0 2.3E-06 5.1E-11 89.7 2.5 70 308-381 74-143 (549)
154 PF11608 Limkain-b1: Limkain b 98.0 2.2E-05 4.8E-10 61.6 7.1 70 28-107 3-77 (90)
155 PF08777 RRM_3: RNA binding mo 98.0 7.5E-06 1.6E-10 69.5 4.9 78 309-391 1-83 (105)
156 KOG2193 IGF-II mRNA-binding pr 98.0 2.4E-06 5.2E-11 86.0 1.9 153 207-388 2-157 (584)
157 PF11608 Limkain-b1: Limkain b 97.9 2.4E-05 5.1E-10 61.5 6.1 69 311-388 4-77 (90)
158 PF08777 RRM_3: RNA binding mo 97.6 0.00012 2.5E-09 62.3 5.7 59 28-92 2-60 (105)
159 COG5175 MOT2 Transcriptional r 97.6 0.00012 2.5E-09 72.0 6.3 78 28-105 115-201 (480)
160 KOG4676 Splicing factor, argin 97.5 8E-05 1.7E-09 74.7 4.0 204 28-273 8-214 (479)
161 KOG0943 Predicted ubiquitin-pr 97.5 3.8E-05 8.3E-10 86.0 2.0 64 560-623 2606-2671(3015)
162 KOG1995 Conserved Zn-finger pr 97.5 7.5E-05 1.6E-09 74.7 3.6 82 308-389 65-155 (351)
163 KOG0115 RNA-binding protein p5 97.5 0.00021 4.6E-09 68.1 5.8 90 258-372 5-94 (275)
164 KOG1995 Conserved Zn-finger pr 97.5 0.00013 2.8E-09 73.0 4.7 83 25-107 64-154 (351)
165 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00029 6.3E-09 51.6 5.2 53 27-86 1-53 (53)
166 KOG3152 TBP-binding protein, a 97.4 0.00012 2.7E-09 69.6 3.3 73 26-98 73-157 (278)
167 KOG0115 RNA-binding protein p5 97.3 0.00047 1E-08 65.8 6.4 89 80-177 5-93 (275)
168 COG5175 MOT2 Transcriptional r 97.3 0.00041 8.9E-09 68.3 6.1 78 312-389 117-204 (480)
169 KOG2314 Translation initiation 97.3 0.00064 1.4E-08 71.5 7.2 78 309-386 58-142 (698)
170 KOG1996 mRNA splicing factor [ 97.2 0.0014 2.9E-08 63.6 7.8 84 306-389 278-368 (378)
171 PF14605 Nup35_RRM_2: Nup53/35 97.1 0.00062 1.3E-08 49.9 4.2 51 311-367 3-53 (53)
172 KOG4849 mRNA cleavage factor I 97.1 0.00059 1.3E-08 67.5 5.2 75 27-101 80-156 (498)
173 KOG1855 Predicted RNA-binding 97.1 0.00033 7.2E-09 71.4 3.4 67 25-91 229-308 (484)
174 KOG2202 U2 snRNP splicing fact 97.0 0.00032 7E-09 67.1 1.8 68 324-391 83-151 (260)
175 KOG2202 U2 snRNP splicing fact 96.8 0.00065 1.4E-08 65.1 1.9 63 42-105 83-146 (260)
176 PF08952 DUF1866: Domain of un 96.7 0.0042 9E-08 55.1 6.1 76 23-107 23-107 (146)
177 PF05172 Nup35_RRM: Nup53/35/4 96.7 0.0067 1.4E-07 50.7 6.9 76 309-386 6-90 (100)
178 KOG1855 Predicted RNA-binding 96.6 0.0012 2.5E-08 67.5 2.3 80 306-385 228-321 (484)
179 PF08952 DUF1866: Domain of un 96.4 0.011 2.4E-07 52.5 7.2 58 325-390 52-109 (146)
180 PF05172 Nup35_RRM: Nup53/35/4 96.4 0.011 2.3E-07 49.5 6.9 77 26-104 5-89 (100)
181 KOG2416 Acinus (induces apopto 96.2 0.0026 5.6E-08 67.5 2.6 82 22-109 439-524 (718)
182 KOG2314 Translation initiation 96.2 0.012 2.7E-07 62.2 7.5 78 115-192 58-142 (698)
183 KOG3152 TBP-binding protein, a 96.2 0.0022 4.7E-08 61.3 1.9 71 309-379 74-157 (278)
184 PF10309 DUF2414: Protein of u 96.2 0.018 4E-07 43.2 6.0 54 310-370 6-62 (62)
185 PF15023 DUF4523: Protein of u 96.1 0.024 5.2E-07 49.5 7.3 75 24-106 83-161 (166)
186 PF10309 DUF2414: Protein of u 95.9 0.039 8.5E-07 41.5 6.7 53 28-89 6-62 (62)
187 KOG2416 Acinus (induces apopto 95.6 0.0096 2.1E-07 63.4 3.4 83 306-393 441-527 (718)
188 PF08675 RNA_bind: RNA binding 95.6 0.047 1E-06 43.3 6.3 56 27-91 9-64 (87)
189 KOG1924 RhoA GTPase effector D 95.2 0.087 1.9E-06 58.2 9.2 18 37-54 81-98 (1102)
190 KOG1996 mRNA splicing factor [ 95.2 0.045 9.8E-07 53.4 6.4 82 25-106 279-366 (378)
191 KOG1924 RhoA GTPase effector D 95.0 0.16 3.4E-06 56.2 10.2 13 164-176 207-219 (1102)
192 PF03467 Smg4_UPF3: Smg-4/UPF3 94.9 0.026 5.6E-07 52.9 3.8 71 26-96 6-82 (176)
193 KOG0921 Dosage compensation co 94.8 0.13 2.8E-06 58.0 9.3 36 49-86 452-487 (1282)
194 PF08675 RNA_bind: RNA binding 94.6 0.12 2.5E-06 41.1 6.1 59 204-269 6-64 (87)
195 PF07576 BRAP2: BRCA1-associat 94.5 0.51 1.1E-05 40.3 10.2 75 28-104 13-92 (110)
196 PF15023 DUF4523: Protein of u 94.2 0.12 2.7E-06 45.2 5.8 73 307-386 84-160 (166)
197 PF04847 Calcipressin: Calcipr 94.0 0.14 3E-06 48.1 6.3 62 322-388 8-71 (184)
198 KOG2591 c-Mpl binding protein, 93.7 0.1 2.2E-06 55.4 5.4 72 308-385 174-249 (684)
199 KOG2068 MOT2 transcription fac 93.4 0.039 8.6E-07 55.4 1.7 79 311-389 79-164 (327)
200 KOG2135 Proteins containing th 93.3 0.05 1.1E-06 56.7 2.4 71 311-387 374-445 (526)
201 KOG2135 Proteins containing th 93.3 0.044 9.6E-07 57.1 2.0 77 25-108 370-447 (526)
202 KOG2068 MOT2 transcription fac 93.3 0.032 7E-07 56.0 0.9 79 27-105 77-161 (327)
203 PF10567 Nab6_mRNP_bdg: RNA-re 93.2 2 4.4E-05 42.5 13.1 156 21-177 9-212 (309)
204 PF04847 Calcipressin: Calcipr 93.1 0.19 4.2E-06 47.2 5.7 63 40-108 8-72 (184)
205 KOG4574 RNA-binding protein (c 92.3 0.083 1.8E-06 58.8 2.4 75 27-107 298-374 (1007)
206 KOG2591 c-Mpl binding protein, 92.0 0.3 6.5E-06 52.1 6.0 71 23-100 171-245 (684)
207 PF11767 SET_assoc: Histone ly 90.8 0.97 2.1E-05 34.6 6.2 56 319-382 10-65 (66)
208 KOG0804 Cytoplasmic Zn-finger 90.6 0.89 1.9E-05 47.5 7.6 76 27-104 74-153 (493)
209 KOG4574 RNA-binding protein (c 90.4 0.2 4.3E-06 56.0 3.0 74 311-389 300-375 (1007)
210 PF10567 Nab6_mRNP_bdg: RNA-re 89.9 6.4 0.00014 39.2 12.4 182 206-388 15-232 (309)
211 KOG4285 Mitotic phosphoprotein 89.1 1 2.2E-05 44.6 6.4 64 27-98 197-260 (350)
212 PF03467 Smg4_UPF3: Smg-4/UPF3 88.9 0.84 1.8E-05 42.8 5.5 68 115-182 7-81 (176)
213 PF03880 DbpA: DbpA RNA bindin 88.1 1.5 3.3E-05 34.5 5.7 59 319-385 11-74 (74)
214 KOG2318 Uncharacterized conser 87.4 2.2 4.8E-05 46.1 8.0 86 22-107 169-308 (650)
215 KOG2253 U1 snRNP complex, subu 87.2 0.059 1.3E-06 58.6 -3.7 71 204-282 38-108 (668)
216 PF11767 SET_assoc: Histone ly 86.8 2.3 4.9E-05 32.6 5.7 54 38-100 11-64 (66)
217 KOG4285 Mitotic phosphoprotein 85.4 1.6 3.4E-05 43.3 5.3 73 310-389 198-271 (350)
218 PF07292 NID: Nmi/IFP 35 domai 83.3 1.3 2.8E-05 36.1 3.2 66 72-137 1-74 (88)
219 PF03880 DbpA: DbpA RNA bindin 83.1 4.6 0.0001 31.7 6.3 57 38-103 12-73 (74)
220 PF07576 BRAP2: BRCA1-associat 83.0 9.3 0.0002 32.7 8.4 67 207-274 13-81 (110)
221 PF07292 NID: Nmi/IFP 35 domai 82.7 1.8 3.9E-05 35.3 3.8 69 159-227 1-73 (88)
222 KOG0804 Cytoplasmic Zn-finger 79.8 3.4 7.4E-05 43.3 5.6 66 309-376 74-141 (493)
223 KOG2253 U1 snRNP complex, subu 79.6 0.82 1.8E-05 50.1 1.1 71 307-385 38-108 (668)
224 PF14111 DUF4283: Domain of un 78.8 3.2 7E-05 37.6 4.7 114 29-148 17-138 (153)
225 KOG2893 Zn finger protein [Gen 74.0 33 0.00071 33.0 9.8 8 351-358 49-56 (341)
226 KOG2891 Surface glycoprotein [ 69.6 21 0.00045 35.0 7.6 34 206-239 149-194 (445)
227 KOG4019 Calcineurin-mediated s 67.2 4.1 8.9E-05 37.5 2.3 74 28-107 11-90 (193)
228 COG5180 PBP1 Protein interacti 64.9 78 0.0017 33.7 11.1 11 254-264 330-340 (654)
229 PRK14548 50S ribosomal protein 64.3 24 0.00051 28.5 5.9 58 29-89 22-81 (84)
230 KOG1295 Nonsense-mediated deca 63.6 6.8 0.00015 40.5 3.3 68 27-94 7-77 (376)
231 KOG4019 Calcineurin-mediated s 62.8 4.7 0.0001 37.1 1.8 73 311-388 12-90 (193)
232 TIGR03636 L23_arch archaeal ri 62.3 29 0.00062 27.6 5.9 58 29-89 15-74 (77)
233 PF07530 PRE_C2HC: Associated 62.3 15 0.00033 28.3 4.3 62 42-106 2-64 (68)
234 KOG2318 Uncharacterized conser 62.1 20 0.00042 39.2 6.4 77 308-384 173-304 (650)
235 smart00596 PRE_C2HC PRE_C2HC d 57.0 20 0.00043 27.6 4.0 62 42-106 2-64 (69)
236 PF14111 DUF4283: Domain of un 56.8 7 0.00015 35.4 2.0 110 126-240 28-139 (153)
237 PRK11901 hypothetical protein; 55.1 35 0.00077 34.8 6.6 68 27-98 245-313 (327)
238 PRK14548 50S ribosomal protein 53.5 38 0.00081 27.4 5.3 57 311-369 22-80 (84)
239 KOG2236 Uncharacterized conser 53.2 1.5E+02 0.0032 31.9 10.8 15 355-370 319-333 (483)
240 TIGR03636 L23_arch archaeal ri 51.7 44 0.00094 26.5 5.3 57 311-369 15-73 (77)
241 PF03468 XS: XS domain; Inter 48.9 26 0.00057 30.2 4.1 49 118-168 11-68 (116)
242 PF15513 DUF4651: Domain of un 47.9 36 0.00078 25.6 4.0 20 324-343 9-28 (62)
243 PF03468 XS: XS domain; Inter 47.4 25 0.00053 30.4 3.7 50 29-81 10-68 (116)
244 KOG4483 Uncharacterized conser 45.4 35 0.00075 35.5 4.8 56 308-369 390-446 (528)
245 KOG3973 Uncharacterized conser 40.7 1.1E+02 0.0024 31.3 7.4 15 211-225 154-168 (465)
246 PRK11634 ATP-dependent RNA hel 38.2 1.2E+02 0.0027 34.6 8.6 61 319-387 497-562 (629)
247 KOG4483 Uncharacterized conser 37.5 56 0.0012 34.0 4.9 53 28-91 392-448 (528)
248 PF15513 DUF4651: Domain of un 37.4 70 0.0015 24.1 4.2 22 130-151 9-30 (62)
249 KOG2295 C2H2 Zn-finger protein 35.5 7.5 0.00016 42.0 -1.6 70 27-96 231-300 (648)
250 COG5638 Uncharacterized conser 34.9 75 0.0016 33.1 5.4 39 24-62 143-186 (622)
251 KOG4410 5-formyltetrahydrofola 33.5 42 0.00091 33.2 3.2 48 310-362 331-379 (396)
252 KOG3168 U1 snRNP component [Tr 32.2 2.4E+02 0.0051 25.8 7.4 9 350-358 65-73 (177)
253 KOG1984 Vesicle coat complex C 31.9 6.8E+02 0.015 29.5 12.5 133 419-552 8-143 (1007)
254 KOG4410 5-formyltetrahydrofola 31.2 1E+02 0.0022 30.6 5.4 49 27-81 330-379 (396)
255 PRK10905 cell division protein 30.7 85 0.0019 32.0 4.9 61 31-92 248-309 (328)
256 KOG4365 Uncharacterized conser 29.5 12 0.00027 39.1 -1.1 79 311-390 5-84 (572)
257 PF02714 DUF221: Domain of unk 27.9 84 0.0018 32.4 4.7 58 72-139 1-58 (325)
258 PF03439 Spt5-NGN: Early trans 27.6 80 0.0017 25.4 3.5 34 53-91 33-66 (84)
259 PF07235 DUF1427: Protein of u 27.1 25 0.00054 28.4 0.4 28 563-590 38-76 (90)
260 PRK01178 rps24e 30S ribosomal 26.4 1.4E+02 0.003 25.0 4.7 47 38-85 30-81 (99)
261 PTZ00191 60S ribosomal protein 26.3 1.5E+02 0.0033 26.6 5.3 54 311-366 83-138 (145)
262 KOG4213 RNA-binding protein La 25.5 88 0.0019 29.0 3.6 70 28-103 112-183 (205)
263 PTZ00191 60S ribosomal protein 25.2 2E+02 0.0043 25.9 5.7 58 28-88 82-141 (145)
264 KOG2044 5'-3' exonuclease HKE1 24.7 5.6E+02 0.012 29.8 10.2 7 312-318 670-676 (931)
265 COG5193 LHP1 La protein, small 24.2 95 0.002 32.6 4.0 58 311-368 176-244 (438)
266 PF14893 PNMA: PNMA 22.7 1.1E+02 0.0023 31.9 4.1 52 26-78 17-71 (331)
267 PF08544 GHMP_kinases_C: GHMP 22.5 2.1E+02 0.0046 22.3 5.2 44 42-90 37-80 (85)
268 KOG2295 C2H2 Zn-finger protein 21.2 26 0.00057 38.0 -0.6 70 307-376 229-299 (648)
269 CHL00030 rpl23 ribosomal prote 20.5 2E+02 0.0044 23.7 4.6 35 29-63 20-56 (93)
No 1
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.3e-98 Score=839.02 Aligned_cols=557 Identities=53% Similarity=0.837 Sum_probs=437.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeeccCC
Q 006641 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRD 107 (637)
Q Consensus 28 ~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~~~ 107 (637)
.+|||+|||+++||++|+++|+.||+|.+|+||+|..|++++|||||+|.+.+||++|++.||+..|+|++|+|+|++++
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECCCCCceeEEEEEecCHHHHHHHHHHhcCCeeCCeeeE
Q 006641 108 PSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVY 187 (637)
Q Consensus 108 ~~~~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~~~~l~ 187 (637)
+..++++.++|||+|||+++++++|+++|+.||.|.+|++..+.+|+++|||||+|.+.++|.+|++.+|+..++++.+.
T Consensus 81 ~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~ 160 (562)
T TIGR01628 81 PSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVY 160 (562)
T ss_pred ccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeehhhhhhhccCCCccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCCCCCcceeeEeecCCHHHHHHHHHHH
Q 006641 188 VGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKL 267 (637)
Q Consensus 188 V~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~~g~srg~~FV~F~~~e~A~~Av~~l 267 (637)
|..+..+..+. ......+++|||+||+.++|+++|+++|+.||.|.++.++++..++++|||||+|.+.++|.+|++.+
T Consensus 161 v~~~~~~~~~~-~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l 239 (562)
T TIGR01628 161 VGRFIKKHERE-AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEM 239 (562)
T ss_pred Eeccccccccc-cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 98877665553 22345678999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC----CcEEEEeccchhhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEee
Q 006641 268 NGTTNN----DKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMV 343 (637)
Q Consensus 268 ng~~~~----g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~ 343 (637)
++..+. ++.+++.+++++.++...++...+....+......+++|||+||++++|+++|+++|++||+|++|+|+.
T Consensus 240 ~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~ 319 (562)
T TIGR01628 240 NGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVML 319 (562)
T ss_pred CCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEE
Confidence 999999 9999999999999998888888777776666677889999999999999999999999999999999999
Q ss_pred cCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccchHHHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCC
Q 006641 344 DQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRAPGGMSPLASGIPGYHHGAP 423 (637)
Q Consensus 344 d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 423 (637)
|.+|+++|||||+|.+.++|.+|+.+|||+.++||+|+|.+|++++.++++++.++.+.....+..+. +.+.. +
T Consensus 320 d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~~~~~~~~~~q~~~~~~~~~~--~~p~~----~ 393 (562)
T TIGR01628 320 DEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQRRAHLQDQFMQLQPRMRQLPM--GSPMG----G 393 (562)
T ss_pred CCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHHHHHHHHHHHHhhhhccCCCC--CCCCC----C
Confidence 99999999999999999999999999999999999999999999999999888887764322111110 11100 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCC-CCCCCCCCCCCCccCCCCCC
Q 006641 424 RLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGPNYIMPYHLQRQVHPGQRTGV-RRSGNTHQMQQPQFMRNSNQ 502 (637)
Q Consensus 424 ~~g~~~~~~g~~~~~~~p~~~~g~g~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~ 502 (637)
.++ ++.|+++++.+++++.+.+|+..+++.+.+.++++. .+.+..+.. ++.+.. ++. +.++.++.+
T Consensus 394 ~~~-~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----------~p~~~~~~~~~~~~~~-~~~-~~~~~~~~~ 460 (562)
T TIGR01628 394 AMG-QPPYYGQGPQQQFNGQPLGWPRMSMMPTPMGPGGPL----------RPNGLAPMNAVRAPSR-NAQ-NAAQKPPMQ 460 (562)
T ss_pred ccc-CCCccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCC----------CCCCCCCCCcCCCCCc-ccc-cccccccCC
Confidence 001 122332222222221111221000000000000000 000000000 000000 000 000000001
Q ss_pred CCccCCCCCCCCCCCCccccCCCccCCCCCCCCCCCCCCCCCCCCcchhhhhcCChhhhhhhcccccchhhhccCCCccc
Q 006641 503 GIRYLDNARNGTDQSVVSMVPVPFEVSGMPATPVETPRPVPVPISTLTSALASASPDDRTRMLGEQLYPLVENIEPVHAS 582 (637)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 582 (637)
+++|+++.+.. |.++ ..|.++.+. .++.+...++++||+++|++||+||||+|||+|++++|++|+
T Consensus 461 ~~~~~p~~~~~---------~~~~---~~~~~~~~~--~~~~~~~~~~~~la~~~p~~q~~~lg~~~~~~~~~~~~~~~~ 526 (562)
T TIGR01628 461 PVMYPPNYQSL---------PLSQ---DLPQPQSTA--SQGGQNKKLAQVLASATPQMQKQVLGERLFPLVEAIEPALAA 526 (562)
T ss_pred CcCCCccccCC---------CCCc---ccccccCCc--cccccchhHHHHHhhCCHHHHHHHHHHHhHHHHHhhChhhcC
Confidence 11222211000 0000 001000000 011122348999999999999999999999999999999999
Q ss_pred chhhhcccCCHHHHHHhhCChHHHHHHHHHHHHHHH
Q 006641 583 KVTGMLLEMDQTEVLHLIESPEALKTKVAEAMAVLQ 618 (637)
Q Consensus 583 kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~~~ 618 (637)
||||||||||++||||||||+|+|++||+||++||+
T Consensus 527 ~~tgm~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (562)
T TIGR01628 527 KITGMLLEMDNSELLHLLESPELLKSKVDEALEVLK 562 (562)
T ss_pred cceEEEecCCHHHHHHHhcCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999995
No 2
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.4e-61 Score=494.29 Aligned_cols=360 Identities=62% Similarity=0.992 Sum_probs=343.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeeccCC
Q 006641 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRD 107 (637)
Q Consensus 28 ~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~~~ 107 (637)
.+|||| +++||++|+++|+.+|+|++|+||+|. | |+|||||+|.+++||++||+++|+..|+|++||||||++|
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 589999 899999999999999999999999999 7 9999999999999999999999999999999999999999
Q ss_pred CccccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECCCCCceeEEEEEecCHHHHHHHHHHhcCCeeCCeeeE
Q 006641 108 PSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVY 187 (637)
Q Consensus 108 ~~~~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~~~~l~ 187 (637)
++. |||+||++++|.++|+++|+.||+|+||+|..+.+| ++|| ||+|+++++|.+|++.+||..++++.++
T Consensus 76 ~~~-------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~ 146 (369)
T KOG0123|consen 76 PSL-------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIY 146 (369)
T ss_pred Cce-------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeE
Confidence 987 999999999999999999999999999999999999 9999 9999999999999999999999999999
Q ss_pred Eeeeehhhhhhhcc--CCCccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCCCCCcceeeEeecCCHHHHHHHHH
Q 006641 188 VGLFVRRQERAQQN--VSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVE 265 (637)
Q Consensus 188 V~~~~~~~~~~~~~--~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~~g~srg~~FV~F~~~e~A~~Av~ 265 (637)
|..+..+.++.... .....+++++++++.+++++.|.++|..+|.|.++.++.+..+++++|+||+|+++++|..|++
T Consensus 147 vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~ 226 (369)
T KOG0123|consen 147 VGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVE 226 (369)
T ss_pred EeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHH
Confidence 99999888775333 3466899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCcEEEEeccchhhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC
Q 006641 266 KLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ 345 (637)
Q Consensus 266 ~lng~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~ 345 (637)
.+++..+.+..++|.+++++.++...++..++.....+.......+|||+||+..++++.|++.|+.||+|++++|+.+.
T Consensus 227 ~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~ 306 (369)
T KOG0123|consen 227 TLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE 306 (369)
T ss_pred hccCCcCCccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEecc
Confidence 99999999999999999999999999999988888888888899999999999999999999999999999999999999
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccchHHHHHHHHHhhhhc
Q 006641 346 HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQI 402 (637)
Q Consensus 346 ~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~~~~~~~~~~~~~~~~ 402 (637)
.|+++||+||+|.+.++|.+|+..+|+..+.+++|+|.+++.++.++.+++..+.++
T Consensus 307 ~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r~~~~~~~~~~~ 363 (369)
T KOG0123|consen 307 NGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDRRARLQAVFGAR 363 (369)
T ss_pred CCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccchhhhhhhccee
Confidence 999999999999999999999999999999999999999998888887776665543
No 3
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=8.8e-50 Score=434.48 Aligned_cols=349 Identities=22% Similarity=0.277 Sum_probs=282.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHc--CCCccCCcceeeee
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL--NFMPINGKPIRIMY 103 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~l--n~~~i~g~~iri~~ 103 (637)
+|++|||+|||++++|++|+++|+.||+|.+|+|++++ |||||+|.+.++|++|++.+ +...|.|++|+|.|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k------~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGK------RQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCC------CEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 47899999999999999999999999999999998753 69999999999999999864 67889999999999
Q ss_pred ccCCCcccc----------CCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECCCCCceeEEEEEecCHHHHHHHH
Q 006641 104 SHRDPSIRK----------SGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAI 173 (637)
Q Consensus 104 s~~~~~~~~----------~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai 173 (637)
+......+. +...+|+|.||+.++|+++|+++|+.||.|.+|++..+. .+++|||+|.+.++|.+|+
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~---~~~~afVef~~~~~A~~A~ 151 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN---NVFQALVEFESVNSAQHAK 151 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC---CceEEEEEECCHHHHHHHH
Confidence 975432221 123479999999999999999999999999999987653 2468999999999999999
Q ss_pred HHhcCCeeCC--eeeEEeeeehhhh--------------------hh----------hc---------------------
Q 006641 174 KMLNGMLIND--KQVYVGLFVRRQE--------------------RA----------QQ--------------------- 200 (637)
Q Consensus 174 ~~lng~~i~~--~~l~V~~~~~~~~--------------------~~----------~~--------------------- 200 (637)
+.|||..+.+ ..+.|.|.....- +. ..
T Consensus 152 ~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 231 (481)
T TIGR01649 152 AALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGP 231 (481)
T ss_pred HHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCC
Confidence 9999999865 4677766542110 00 00
Q ss_pred --------------------------------------cCCCccceEEecCCCc-cCCHHHHHHhhcccCCeeEEEEeeC
Q 006641 201 --------------------------------------NVSPKFTNVYVNNLAE-TVTDEDLKKIFGHFGTITSAIVMKD 241 (637)
Q Consensus 201 --------------------------------------~~~~~~~~lfV~nLp~-~~tee~L~~~F~~~G~i~~v~v~~d 241 (637)
......++|||+||++ .+++++|+++|+.||.|.+|.++++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~ 311 (481)
T TIGR01649 232 LAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN 311 (481)
T ss_pred CCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC
Confidence 0011346899999998 6999999999999999999999887
Q ss_pred CCCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccchhhhHHHH-------HH--HHHHHhhhhhh--------
Q 006641 242 SDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREAD-------LR--AKFEQERISRY-------- 304 (637)
Q Consensus 242 ~~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~~~~~~~~~-------~~--~~~~~~~~~~~-------- 304 (637)
+ +|||||+|.+.++|..|++.||+..+.|+.|+|.++......... +. ..+......+.
T Consensus 312 ~----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~ 387 (481)
T TIGR01649 312 K----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANK 387 (481)
T ss_pred C----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccc
Confidence 3 689999999999999999999999999999999987553211100 00 00100000000
Q ss_pred --hhcccccccccCCCCCCCHHHHHHHHhhcCC--eEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEE-
Q 006641 305 --EKLKGANLYLKNLDDSINDEKLKELFSEFGT--ITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKP- 379 (637)
Q Consensus 305 --~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~--i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~- 379 (637)
...++.+|||+|||+++|+++|+++|+.||. |++|+++.+.++ ++++|||+|.+.++|.+|+..||++.+.++.
T Consensus 388 ~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~ 466 (481)
T TIGR01649 388 NNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNE-RSKMGLLEWESVEDAVEALIALNHHQLNEPNG 466 (481)
T ss_pred cccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCC-cceeEEEEcCCHHHHHHHHHHhcCCccCCCCC
Confidence 0135678999999999999999999999998 899998766544 5899999999999999999999999999885
Q ss_pred -----EEEEEccch
Q 006641 380 -----LYVAVAQRK 388 (637)
Q Consensus 380 -----l~V~~a~~~ 388 (637)
|+|++++++
T Consensus 467 ~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 467 SAPYHLKVSFSTSR 480 (481)
T ss_pred CccceEEEEeccCC
Confidence 999999764
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=8.7e-45 Score=383.38 Aligned_cols=341 Identities=24% Similarity=0.407 Sum_probs=235.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeecc
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSH 105 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~ 105 (637)
+..+|||+|||++++|++|+++|+.||+|.+|+|++|+.+++++|||||+|.+.++|++||+.||+..|.|++|+|.|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCccccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECC-CCCceeEEEEEecCHHHHHHHHHHhcCCeeCC-
Q 006641 106 RDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKMLNGMLIND- 183 (637)
Q Consensus 106 ~~~~~~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~i~~- 183 (637)
.... .....+|||+|||.++++++|+++|+.||.|..+++..+. ++.++|||||+|.+.++|..|++.||+..+.+
T Consensus 82 ~~~~--~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~ 159 (352)
T TIGR01661 82 PSSD--SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGC 159 (352)
T ss_pred cccc--ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 5432 2234579999999999999999999999999999999886 78899999999999999999999999998876
Q ss_pred -eeeEEeeeehhhhhhhccCCCccceE-----EecCCCccCCHHHHHHhhcccCCeeEEEEeeCCCCCcceeeEeecCCH
Q 006641 184 -KQVYVGLFVRRQERAQQNVSPKFTNV-----YVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSP 257 (637)
Q Consensus 184 -~~l~V~~~~~~~~~~~~~~~~~~~~l-----fV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~~g~srg~~FV~F~~~ 257 (637)
..+.|.+..................+ ....++..+.. ...+...... . ........+......
T Consensus 160 ~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~--~--~~~~~~~~~~~~~~~ 228 (352)
T TIGR01661 160 TEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTA-------AGIGPMHHAA--A--RFRPSAGDFTAVLAH 228 (352)
T ss_pred ceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccc-------cCCCCccCcc--c--ccccCcchhhhhhhh
Confidence 45666665433211100000000000 00000000000 0000000000 0 000000000000000
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEeccchhhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeE
Q 006641 258 DAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTIT 337 (637)
Q Consensus 258 e~A~~Av~~lng~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~ 337 (637)
......+...... ............ ...............+.+|||+|||+++++++|+++|++||.|+
T Consensus 229 ~~~~~~~~~~~~~---------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~ 297 (352)
T TIGR01661 229 QQQQHAVAQQHAA---------QRASPPATDGQT--AGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQ 297 (352)
T ss_pred hhhhccccccccc---------ccCCCccccccc--cccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeE
Confidence 0000000000000 000000000000 00000000001123455799999999999999999999999999
Q ss_pred EEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccchHH
Q 006641 338 SCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEE 390 (637)
Q Consensus 338 ~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~~~~ 390 (637)
+|+|++|. ++++||||||+|.+.++|.+|+..|||..|+||.|+|.|+..|+.
T Consensus 298 ~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 298 NVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred EEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 99999996 899999999999999999999999999999999999999988753
No 5
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=5.1e-41 Score=332.82 Aligned_cols=284 Identities=28% Similarity=0.400 Sum_probs=236.5
Q ss_pred EEecChHHHHHHHHHcCCCccCCcceeeeeccCCC-----c---cccCCCccEEEeCCCccccHHHHHhHhhccCceeEE
Q 006641 74 VNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDP-----S---IRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSC 145 (637)
Q Consensus 74 V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~~~~-----~---~~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~ 145 (637)
-...+.|+|.++|.+-. |-.|.+.-.+++- . ....-.+-|||+.||.++.|++|..+|+..|.|..+
T Consensus 39 ~~~~~~eaal~al~E~t-----gy~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~el 113 (506)
T KOG0117|consen 39 AGVQSEEAALKALLERT-----GYTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYEL 113 (506)
T ss_pred cccccHHHHHHHHHHhc-----CceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeE
Confidence 33455778888885433 3344444333321 0 111224569999999999999999999999999999
Q ss_pred EEeECC-CCCceeEEEEEecCHHHHHHHHHHhcCCee-CCeeeEEeeeehhhhhhhccCCCccceEEecCCCccCCHHHH
Q 006641 146 KVAIDS-NGQSKGYGFVQFENEEAAQNAIKMLNGMLI-NDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDL 223 (637)
Q Consensus 146 ~v~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~i-~~~~l~V~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L 223 (637)
+++.|+ +|.++|||||.|.+.++|..||+.||+.+| .|+.|.|..+. ..++|||+|+|+++++++|
T Consensus 114 RLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv------------an~RLFiG~IPK~k~keeI 181 (506)
T KOG0117|consen 114 RLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV------------ANCRLFIGNIPKTKKKEEI 181 (506)
T ss_pred EEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee------------ecceeEeccCCccccHHHH
Confidence 999996 999999999999999999999999999987 67888886544 4588999999999999999
Q ss_pred HHhhcccCC-eeEEEEeeCCC--CCcceeeEeecCCHHHHHHHHHHHcCC--CCCCcEEEEeccchhhhHHHHHHHHHHH
Q 006641 224 KKIFGHFGT-ITSAIVMKDSD--GKSRCFGFVNFQSPDAAAAAVEKLNGT--TNNDKVWYVGRAQKRAEREADLRAKFEQ 298 (637)
Q Consensus 224 ~~~F~~~G~-i~~v~v~~d~~--g~srg~~FV~F~~~e~A~~Av~~lng~--~~~g~~l~v~~~~~~~~~~~~~~~~~~~ 298 (637)
.+.+++.++ |.+|.+..+.+ .++||||||+|+++..|..|..+|-.. .+.|..+.|.|+.+..+...+...
T Consensus 182 lee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms---- 257 (506)
T KOG0117|consen 182 LEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMS---- 257 (506)
T ss_pred HHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhh----
Confidence 999999875 67888877754 789999999999999999999887543 367899999999988766554222
Q ss_pred hhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCE
Q 006641 299 ERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRK 378 (637)
Q Consensus 299 ~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~ 378 (637)
.-..|||+||+.++|+|.|+++|++||.|++|+.++| ||||.|.+.++|.+|++.+||+.|+|.
T Consensus 258 ---------~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~davkAm~~~ngkeldG~ 321 (506)
T KOG0117|consen 258 ---------KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAEREDAVKAMKETNGKELDGS 321 (506)
T ss_pred ---------heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchHHHHHHHHHhcCceecCc
Confidence 2345999999999999999999999999999999866 899999999999999999999999999
Q ss_pred EEEEEEccchHHHHHH
Q 006641 379 PLYVAVAQRKEERKAR 394 (637)
Q Consensus 379 ~l~V~~a~~~~~~~~~ 394 (637)
.|.|.+|++.++++..
T Consensus 322 ~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 322 PIEVTLAKPVDKKKKE 337 (506)
T ss_pred eEEEEecCChhhhccc
Confidence 9999999998776543
No 6
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=9.5e-41 Score=308.29 Aligned_cols=314 Identities=26% Similarity=0.447 Sum_probs=238.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeee
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIM 102 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~ 102 (637)
.....+.|.|.-||..+|++||+.+|..+|+|++|+++||+.|+.|+||+||+|.+++||++|+..||+..+-.|.|+|.
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 34556889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCccccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECC-CCCceeEEEEEecCHHHHHHHHHHhcCCee
Q 006641 103 YSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKMLNGMLI 181 (637)
Q Consensus 103 ~s~~~~~~~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~i 181 (637)
|+.+.... ....+|||.+||+.++.++|.++|+.||.|..-+|..|. +|.++|.+||.|+..++|+.||+.|||..-
T Consensus 117 yARPSs~~--Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P 194 (360)
T KOG0145|consen 117 YARPSSDS--IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKP 194 (360)
T ss_pred eccCChhh--hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCC
Confidence 99765443 345689999999999999999999999999888888887 999999999999999999999999999875
Q ss_pred CCe--eeEEeeeehhhhhhhccCCCccceEEecCCCccCCHHHHHHhhc----ccCCeeEEEEeeCCCCCcceeeEeecC
Q 006641 182 NDK--QVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFG----HFGTITSAIVMKDSDGKSRCFGFVNFQ 255 (637)
Q Consensus 182 ~~~--~l~V~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~----~~G~i~~v~v~~d~~g~srg~~FV~F~ 255 (637)
.+. .|.|++...... ..+..-|..+|. .|+.-...... + |-+-..-
T Consensus 195 ~g~tepItVKFannPsq--------------------~t~~a~ls~ly~sp~rr~~Gp~hh~~~-----r---~r~~~~~ 246 (360)
T KOG0145|consen 195 SGCTEPITVKFANNPSQ--------------------KTNQALLSQLYQSPARRYGGPMHHQAQ-----R---FRLDNLL 246 (360)
T ss_pred CCCCCCeEEEecCCccc--------------------ccchhhhHHhhcCccccCCCcccchhh-----h---hcccccc
Confidence 443 455554433211 122222222221 11111000000 0 0001111
Q ss_pred CHHHHHHHHHHHcCCCCCCcEEEEeccchhhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCC
Q 006641 256 SPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGT 335 (637)
Q Consensus 256 ~~e~A~~Av~~lng~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~ 335 (637)
.+.. ++..+....+++-.--+...-+ .....+.+|||-||..+.+|.-|.++|.+||.
T Consensus 247 ~~~~---~~~rfsP~~~d~m~~l~~~~lp-------------------~~~~~g~ciFvYNLspd~de~~LWQlFgpFGA 304 (360)
T KOG0145|consen 247 NPHA---AQARFSPMTIDGMSGLAGVNLP-------------------GGPGGGWCIFVYNLSPDADESILWQLFGPFGA 304 (360)
T ss_pred chhh---hhccCCCccccccceeeeeccC-------------------CCCCCeeEEEEEecCCCchHhHHHHHhCcccc
Confidence 1111 1111111111111111100000 01123678999999999999999999999999
Q ss_pred eEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccch
Q 006641 336 ITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRK 388 (637)
Q Consensus 336 i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~~ 388 (637)
|+.|+|++|- +.+.||||||++.+.++|..||..|||..+++|.|.|+|...|
T Consensus 305 v~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 305 VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred eeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 9999999995 6899999999999999999999999999999999999998755
No 7
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=5.2e-40 Score=353.83 Aligned_cols=281 Identities=25% Similarity=0.365 Sum_probs=229.2
Q ss_pred ChHHHHHHHHHcCCCccCCcceeeeeccCCCcc---ccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECCCCC
Q 006641 78 NPQDAANAKEALNFMPINGKPIRIMYSHRDPSI---RKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQ 154 (637)
Q Consensus 78 ~~e~A~~Al~~ln~~~i~g~~iri~~s~~~~~~---~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~~g~ 154 (637)
..++|.+||.++++..+........+..+-+.. .....++|||+|||+++++++|+++|+.||.|.+|+|+.|.+|.
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~ 97 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQ 97 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCC
Confidence 468899999888876665544433343222111 11234689999999999999999999999999999999999999
Q ss_pred ceeEEEEEecCHHHHHHHHHHhcCCeeC-CeeeEEeeeehhhhhhhccCCCccceEEecCCCccCCHHHHHHhhcccCC-
Q 006641 155 SKGYGFVQFENEEAAQNAIKMLNGMLIN-DKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGT- 232 (637)
Q Consensus 155 skg~afV~F~~~e~A~~Ai~~lng~~i~-~~~l~V~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~- 232 (637)
++|||||+|.+.++|++||+.||+..+. ++.+.|.+. ...++|||+|||+++++++|.+.|++++.
T Consensus 98 sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S------------~~~~rLFVgNLP~~~TeeeL~eeFskv~eg 165 (578)
T TIGR01648 98 NRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS------------VDNCRLFVGGIPKNKKREEILEEFSKVTEG 165 (578)
T ss_pred ccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc------------ccCceeEeecCCcchhhHHHHHHhhcccCC
Confidence 9999999999999999999999998885 666666442 23478999999999999999999999864
Q ss_pred eeEEEEeeC--CCCCcceeeEeecCCHHHHHHHHHHHcC--CCCCCcEEEEeccchhhhHHHHHHHHHHHhhhhhhhhcc
Q 006641 233 ITSAIVMKD--SDGKSRCFGFVNFQSPDAAAAAVEKLNG--TTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLK 308 (637)
Q Consensus 233 i~~v~v~~d--~~g~srg~~FV~F~~~e~A~~Av~~lng--~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (637)
+.++.+... ..++++|||||+|.++++|..|++.++. ..+.++.|.|.++........+ ....
T Consensus 166 vv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~-------------~~~~ 232 (578)
T TIGR01648 166 VVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDED-------------VMAK 232 (578)
T ss_pred ceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccccccc-------------cccc
Confidence 445544433 2467899999999999999999998864 3477999999998765432110 1123
Q ss_pred cccccccCCCCCCCHHHHHHHHhhc--CCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 309 GANLYLKNLDDSINDEKLKELFSEF--GTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 309 ~~~l~V~nL~~~~t~e~L~~~F~~~--G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
..+|||+||++++|+|+|+++|++| |+|++|+++ ++||||+|.+.++|.+|+++||+..|+|+.|+|.|++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 4579999999999999999999999 999999876 5699999999999999999999999999999999998
Q ss_pred chHH
Q 006641 387 RKEE 390 (637)
Q Consensus 387 ~~~~ 390 (637)
+++.
T Consensus 306 p~~~ 309 (578)
T TIGR01648 306 PVDK 309 (578)
T ss_pred CCCc
Confidence 7653
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=7.4e-39 Score=357.82 Aligned_cols=267 Identities=36% Similarity=0.611 Sum_probs=237.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeecc
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSH 105 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~ 105 (637)
...+|||+|||.++++++|+++|+.||.|++|+|.+|. +++++|||||.|.+.++|.+|++.||+..+.|+.|+|.+..
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~ 165 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFI 165 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccc
Confidence 35689999999999999999999999999999999986 56788999999999999999999999999999999997654
Q ss_pred CCCcc---ccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECCCCCceeEEEEEecCHHHHHHHHHHhcCCeeC
Q 006641 106 RDPSI---RKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLIN 182 (637)
Q Consensus 106 ~~~~~---~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~ 182 (637)
+.... .....++|||+||+.++++++|+++|+.||.|.++.+..+.+|.++|||||+|.+.++|.+|++.+++..+.
T Consensus 166 ~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~ 245 (562)
T TIGR01628 166 KKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIG 245 (562)
T ss_pred cccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEec
Confidence 43222 234457899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----CeeeEEeeeehhhhhhh------------ccCCCccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCCCCCc
Q 006641 183 ----DKQVYVGLFVRRQERAQ------------QNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKS 246 (637)
Q Consensus 183 ----~~~l~V~~~~~~~~~~~------------~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~~g~s 246 (637)
++.+.|.+...+.++.. .......++|||+||+.++++++|+++|++||.|.++.++.+..+++
T Consensus 246 ~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~ 325 (562)
T TIGR01628 246 LAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVS 325 (562)
T ss_pred ccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCc
Confidence 99999988766554411 11133557899999999999999999999999999999999988999
Q ss_pred ceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccchhhhHHHHHH
Q 006641 247 RCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLR 293 (637)
Q Consensus 247 rg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~~~~~~~~~~~ 293 (637)
+|||||+|.+.++|.+|+..+|+..+.|+.|+|.++..+..+...+.
T Consensus 326 ~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~~~~~~ 372 (562)
T TIGR01628 326 RGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQRRAHLQ 372 (562)
T ss_pred CCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHHHHHHH
Confidence 99999999999999999999999999999999999988776654433
No 9
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=8.8e-40 Score=352.08 Aligned_cols=297 Identities=20% Similarity=0.304 Sum_probs=242.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccC-Ccceee
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPIN-GKPIRI 101 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~-g~~iri 101 (637)
.+...++|||+|||++++|++|+++|++||+|.+|+|++| .+++++|||||+|.+.++|++||+.||+..|. |+.+.|
T Consensus 54 ~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V 132 (578)
T TIGR01648 54 QPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGV 132 (578)
T ss_pred CCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccc
Confidence 3445689999999999999999999999999999999999 78999999999999999999999999998885 788888
Q ss_pred eeccCCCccccCCCccEEEeCCCccccHHHHHhHhhccCc-eeEEEEeEC--CCCCceeEEEEEecCHHHHHHHHHHhcC
Q 006641 102 MYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGT-VLSCKVAID--SNGQSKGYGFVQFENEEAAQNAIKMLNG 178 (637)
Q Consensus 102 ~~s~~~~~~~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~-I~s~~v~~~--~~g~skg~afV~F~~~e~A~~Ai~~lng 178 (637)
.++.. .++|||+|||+++++++|++.|+.++. +.++.+... ..++++|||||+|.+.++|..|++.|+.
T Consensus 133 ~~S~~--------~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~ 204 (578)
T TIGR01648 133 CISVD--------NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMP 204 (578)
T ss_pred ccccc--------CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhc
Confidence 77643 467999999999999999999999874 444444332 2567899999999999999999988764
Q ss_pred --CeeCCeeeEEeeeehhhhhhhccCCCccceEEecCCCccCCHHHHHHhhccc--CCeeEEEEeeCCCCCcceeeEeec
Q 006641 179 --MLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHF--GTITSAIVMKDSDGKSRCFGFVNF 254 (637)
Q Consensus 179 --~~i~~~~l~V~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~--G~i~~v~v~~d~~g~srg~~FV~F 254 (637)
..+.++.|.|.|..+...... ......++|||+||++++++++|+++|++| |.|++|.+++ +||||+|
T Consensus 205 gki~l~Gr~I~VdwA~p~~~~d~-~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-------gfAFVeF 276 (578)
T TIGR01648 205 GRIQLWGHVIAVDWAEPEEEVDE-DVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-------DYAFVHF 276 (578)
T ss_pred cceEecCceEEEEeecccccccc-cccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-------CeEEEEe
Confidence 457899999999877554322 223445789999999999999999999999 9999997764 4999999
Q ss_pred CCHHHHHHHHHHHcCCCCCCcEEEEeccchhhhHHHHHH----------HHHHHhhhhhhhhcccccccccCCCCCCCHH
Q 006641 255 QSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLR----------AKFEQERISRYEKLKGANLYLKNLDDSINDE 324 (637)
Q Consensus 255 ~~~e~A~~Av~~lng~~~~g~~l~v~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e 324 (637)
.+.++|.+|++.+|+..+.|+.|.|.++........... ......+....-.....+++++|++++.+++
T Consensus 277 ~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~ 356 (578)
T TIGR01648 277 EDREDAVKAMDELNGKELEGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYA 356 (578)
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCcccccccccccccccccc
Confidence 999999999999999999999999999976533210000 0000001111122346789999999999999
Q ss_pred HHHHHHhhcCCe
Q 006641 325 KLKELFSEFGTI 336 (637)
Q Consensus 325 ~L~~~F~~~G~i 336 (637)
-+.++|..+|.|
T Consensus 357 ~~~~~f~~~g~~ 368 (578)
T TIGR01648 357 PSLHFPRMPGPI 368 (578)
T ss_pred chhhccccCccc
Confidence 999999988763
No 10
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.9e-37 Score=307.52 Aligned_cols=252 Identities=24% Similarity=0.403 Sum_probs=228.1
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccC-Ccc
Q 006641 20 AVPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPIN-GKP 98 (637)
Q Consensus 20 ~~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~-g~~ 98 (637)
..+.+...+.||||.||.++.|++|..+|++.|+|..+|++.|..++.++|||||.|.+.++|.+||+.||+.+|+ ||.
T Consensus 76 eg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~ 155 (506)
T KOG0117|consen 76 EGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKL 155 (506)
T ss_pred cCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCE
Confidence 3455567899999999999999999999999999999999999999999999999999999999999999999995 999
Q ss_pred eeeeeccCCCccccCCCccEEEeCCCccccHHHHHhHhhccCc-eeEEEEeECC--CCCceeEEEEEecCHHHHHHHHHH
Q 006641 99 IRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGT-VLSCKVAIDS--NGQSKGYGFVQFENEEAAQNAIKM 175 (637)
Q Consensus 99 iri~~s~~~~~~~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~-I~s~~v~~~~--~g~skg~afV~F~~~e~A~~Ai~~ 175 (637)
|+|+.|..+ .+|||+|||+++++++|.+.|+..+. |+.+.|..++ ..+++|||||+|.++..|..|..+
T Consensus 156 igvc~Svan--------~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrK 227 (506)
T KOG0117|consen 156 LGVCVSVAN--------CRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRK 227 (506)
T ss_pred eEEEEeeec--------ceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhh
Confidence 999988654 47999999999999999999999884 7777777766 467999999999999999999987
Q ss_pred hcC--CeeCCeeeEEeeeehhhhhhhccCCCccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCCCCCcceeeEee
Q 006641 176 LNG--MLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVN 253 (637)
Q Consensus 176 lng--~~i~~~~l~V~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~~g~srg~~FV~ 253 (637)
|-. ..++|+.+.|+|+.+..+...+ ....-..|||+||+.++|+|.|+++|++||.|+.|...+| ||||.
T Consensus 228 l~~g~~klwgn~~tVdWAep~~e~ded-~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVH 299 (506)
T KOG0117|consen 228 LMPGKIKLWGNAITVDWAEPEEEPDED-TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVH 299 (506)
T ss_pred ccCCceeecCCcceeeccCcccCCChh-hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEe
Confidence 643 4689999999999988776554 5556688999999999999999999999999999988877 99999
Q ss_pred cCCHHHHHHHHHHHcCCCCCCcEEEEeccchhhh
Q 006641 254 FQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAE 287 (637)
Q Consensus 254 F~~~e~A~~Av~~lng~~~~g~~l~v~~~~~~~~ 287 (637)
|.+.++|.+|++.+|+++++|..|.|..+++..+
T Consensus 300 f~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 300 FAEREDAVKAMKETNGKELDGSPIEVTLAKPVDK 333 (506)
T ss_pred ecchHHHHHHHHHhcCceecCceEEEEecCChhh
Confidence 9999999999999999999999999999987554
No 11
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.5e-36 Score=305.68 Aligned_cols=343 Identities=23% Similarity=0.399 Sum_probs=275.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeeccCC
Q 006641 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRD 107 (637)
Q Consensus 28 ~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~~~ 107 (637)
.||||++||++++.++|.++|+.+|+|..+.|..++.+..++||+||.|.-.||+++|++..+...|.|+.|++..+.+.
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999887643
Q ss_pred Cccc------------------------cCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECCCCCceeEEEEEe
Q 006641 108 PSIR------------------------KSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQF 163 (637)
Q Consensus 108 ~~~~------------------------~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~~g~skg~afV~F 163 (637)
.... .-....|+|+|||+.+...+|..+|+.||.|+.+.|....+|+-+|||||.|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 2211 0012469999999999999999999999999999999888999999999999
Q ss_pred cCHHHHHHHHHHhcCCeeCCeeeEEeeeehhhhhhh-----------------------------------------c--
Q 006641 164 ENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQ-----------------------------------------Q-- 200 (637)
Q Consensus 164 ~~~e~A~~Ai~~lng~~i~~~~l~V~~~~~~~~~~~-----------------------------------------~-- 200 (637)
.+..+|..|++.+|+..|.|+.|-|.|+..+..... +
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~ 245 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEET 245 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccc
Confidence 999999999999999999999999999854321100 0
Q ss_pred c---------------------C--------------------CCccceEEecCCCccCCHHHHHHhhcccCCeeEEEEe
Q 006641 201 N---------------------V--------------------SPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVM 239 (637)
Q Consensus 201 ~---------------------~--------------------~~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~ 239 (637)
. . .....+|||.|||+++++++|.+.|++||.|..+.+.
T Consensus 246 D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV 325 (678)
T KOG0127|consen 246 DGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIV 325 (678)
T ss_pred cccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEE
Confidence 0 0 0011579999999999999999999999999999998
Q ss_pred eCC-CCCcceeeEeecCCHHHHHHHHHHHc-----C-CCCCCcEEEEeccchhhhHHHHHHH------------------
Q 006641 240 KDS-DGKSRCFGFVNFQSPDAAAAAVEKLN-----G-TTNNDKVWYVGRAQKRAEREADLRA------------------ 294 (637)
Q Consensus 240 ~d~-~g~srg~~FV~F~~~e~A~~Av~~ln-----g-~~~~g~~l~v~~~~~~~~~~~~~~~------------------ 294 (637)
.++ +++++|.|||.|.+..+|..||+..+ + ..++|+.|.|..+..+.+.......
T Consensus 326 ~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG 405 (678)
T KOG0127|consen 326 KDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREG 405 (678)
T ss_pred eccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccC
Confidence 886 58999999999999999999998762 2 4477899999888655443322110
Q ss_pred ---------------------HHHHhhhhhh----hhcccccccccCCCCCCCHHHHHHHHhh----c-CCeE-EEEEee
Q 006641 295 ---------------------KFEQERISRY----EKLKGANLYLKNLDDSINDEKLKELFSE----F-GTIT-SCKVMV 343 (637)
Q Consensus 295 ---------------------~~~~~~~~~~----~~~~~~~l~V~nL~~~~t~e~L~~~F~~----~-G~i~-~~~i~~ 343 (637)
++........ -....+.|.|+|||..+++..|+.+... | +.+. .|+.+.
T Consensus 406 ~I~~gt~aAeglS~~Dm~kRer~~~~k~k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~ 485 (678)
T KOG0127|consen 406 LIRDGTPAAEGLSATDMAKRERIAERKRKKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIK 485 (678)
T ss_pred ccccCChhhcccchhhHHHHHHHHHHHHHhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhh
Confidence 0000000000 0122456899999999999999988753 2 2332 345555
Q ss_pred c----CCCCcccEEEEEeCCHHHHHHHHHHh
Q 006641 344 D----QHGFSKGSGFAAFSMPEEATRALNEM 370 (637)
Q Consensus 344 d----~~g~~~g~afV~f~~~~~A~~A~~~~ 370 (637)
+ ..+.+.||+|+.|..++.|.+|+..+
T Consensus 486 ~le~~~k~~s~g~aF~~f~EhEhalkalk~~ 516 (678)
T KOG0127|consen 486 FLEEEKKNYSEGYAFVGFTEHEHALKALKVL 516 (678)
T ss_pred hHHhhhhcccccccccCccHHHHHHHhhhcc
Confidence 4 25778999999999999999999665
No 12
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.1e-37 Score=286.55 Aligned_cols=234 Identities=23% Similarity=0.452 Sum_probs=194.7
Q ss_pred CCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECCCCCceeEEEEEecCHHHHHHHHHHhcCCeeCCeeeEEeeeeh
Q 006641 114 GYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVR 193 (637)
Q Consensus 114 ~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~~~~l~V~~~~~ 193 (637)
..++|||+||+.++||+-|..+|+..|.|.+|+++.+ .+.|.|...
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~----------------------------------e~~v~wa~~ 50 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD----------------------------------ELKVNWATA 50 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehh----------------------------------hhccccccC
Confidence 3468999999999999999999999999999999865 233333322
Q ss_pred hhhhhhccCCCccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCC-CCCcceeeEeecCCHHHHHHHHHHHcCCCC
Q 006641 194 RQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVEKLNGTTN 272 (637)
Q Consensus 194 ~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~-~g~srg~~FV~F~~~e~A~~Av~~lng~~~ 272 (637)
.... ........-.+||+.|..+++.++|++.|.+||+|.+++|++|. ++++|||+||.|.+.++|+.|++.|||..+
T Consensus 51 p~nQ-sk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl 129 (321)
T KOG0148|consen 51 PGNQ-SKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL 129 (321)
T ss_pred cccC-CCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee
Confidence 2111 11122234569999999999999999999999999999999996 599999999999999999999999999999
Q ss_pred CCcEEEEeccchhhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccE
Q 006641 273 NDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGS 352 (637)
Q Consensus 273 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~ 352 (637)
++|.|+-.|+.+|..........++.- -.......|+|||+|++..+||++||+.|++||.|.+|+|++| +||
T Consensus 130 G~R~IRTNWATRKp~e~n~~~ltfdeV--~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGY 202 (321)
T KOG0148|consen 130 GRRTIRTNWATRKPSEMNGKPLTFDEV--YNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGY 202 (321)
T ss_pred ccceeeccccccCccccCCCCccHHHH--hccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cce
Confidence 999999999988762221111111111 1123456789999999999999999999999999999999999 899
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccchH
Q 006641 353 GFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKE 389 (637)
Q Consensus 353 afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~~~ 389 (637)
+||.|++.|+|.+||..||+.+|+|..+++.|-+...
T Consensus 203 aFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 203 AFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred EEEEecchhhHHHHHHHhcCceeCceEEEEeccccCC
Confidence 9999999999999999999999999999999988653
No 13
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=9.2e-37 Score=301.06 Aligned_cols=359 Identities=24% Similarity=0.384 Sum_probs=242.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCC-ccCC--cce
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFM-PING--KPI 99 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~-~i~g--~~i 99 (637)
+..+..+|||+-||..++|.||+++|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+.+|++. .|-| .+|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 3355689999999999999999999999999999999999999999999999999999999999999874 3334 778
Q ss_pred eeeeccCCCccccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECCCCCceeEEEEEecCHHHHHHHHHHhcCC
Q 006641 100 RIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGM 179 (637)
Q Consensus 100 ri~~s~~~~~~~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~ 179 (637)
.|.++..+. .+-...++|||+-|++.++|.+++++|++||.|++|.|++|+++.+||||||.|.++|.|..||+.||+.
T Consensus 110 qvk~Ad~E~-er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~ 188 (510)
T KOG0144|consen 110 QVKYADGER-ERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGT 188 (510)
T ss_pred eecccchhh-hccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccc
Confidence 888874332 2224467899999999999999999999999999999999999999999999999999999999999986
Q ss_pred e-e--CCeeeEEeeeehhhhhhhccC-------------CCccc------------------------eEEecCCCc--c
Q 006641 180 L-I--NDKQVYVGLFVRRQERAQQNV-------------SPKFT------------------------NVYVNNLAE--T 217 (637)
Q Consensus 180 ~-i--~~~~l~V~~~~~~~~~~~~~~-------------~~~~~------------------------~lfV~nLp~--~ 217 (637)
. + ....+.|+|++.++++..+.. ...+. -.-+++++. .
T Consensus 189 ~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~ 268 (510)
T KOG0144|consen 189 QTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGP 268 (510)
T ss_pred eeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCC
Confidence 4 3 456889999876655422110 00000 011112211 0
Q ss_pred CCHHHHHHh-------------------------hcccCCeeEEE---EeeCC-----C---------------------
Q 006641 218 VTDEDLKKI-------------------------FGHFGTITSAI---VMKDS-----D--------------------- 243 (637)
Q Consensus 218 ~tee~L~~~-------------------------F~~~G~i~~v~---v~~d~-----~--------------------- 243 (637)
++...+... .+.-|...... -..+. +
T Consensus 269 l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~ 348 (510)
T KOG0144|consen 269 LNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLA 348 (510)
T ss_pred cchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccc
Confidence 111111000 00001110000 00000 0
Q ss_pred ----------------CCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccchhhhHHHHHHHHHHHhhhhhhhhc
Q 006641 244 ----------------GKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKL 307 (637)
Q Consensus 244 ----------------g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (637)
+..-..+...|. -..+..-...+.+. .++...+...-.....+............+..
T Consensus 349 ~~~a~a~~~sp~aa~~~~lq~~~ltp~~-~~~~~~~tQa~q~~-----~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGp 422 (510)
T KOG0144|consen 349 GGMAGAGTTSPVAASLANLQQIGLTPFA-GAAALDHTQAMQQY-----AQSANLAAPGLVGQQATTQQAQMVGNGQVEGP 422 (510)
T ss_pred cccccccccCcccccccccccccCCChh-hhhhHhHHHhhhHh-----hhhhhhcccchhhhhHhhhhhhcccCccccCC
Confidence 000001111111 00000000000000 00000000000000000000011111223456
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
.+.+|||.+||.+.-|.+|-..|..||.|.+.+++.|+ ++.+++|+||.|++..+|..||..|||..+++|+|+|.+..
T Consensus 423 eGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~ 502 (510)
T KOG0144|consen 423 EGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKR 502 (510)
T ss_pred CccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeee
Confidence 78999999999999999999999999999999999995 89999999999999999999999999999999999999887
Q ss_pred ch
Q 006641 387 RK 388 (637)
Q Consensus 387 ~~ 388 (637)
++
T Consensus 503 ~~ 504 (510)
T KOG0144|consen 503 DR 504 (510)
T ss_pred cc
Confidence 65
No 14
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=2e-35 Score=321.86 Aligned_cols=262 Identities=22% Similarity=0.334 Sum_probs=210.3
Q ss_pred CccEEEeCCCccccHHHHHhHhhccCceeEEEEeECCCCCceeEEEEEecCHHHHHHHHHHh--cCCeeCCeeeEEeeee
Q 006641 115 YGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKML--NGMLINDKQVYVGLFV 192 (637)
Q Consensus 115 ~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~l--ng~~i~~~~l~V~~~~ 192 (637)
+..|||+|||+++++++|+++|+.||.|.+|+++. +++||||+|.+.++|.+|++.+ ++..+.|+.|.|.++.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~-----~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~ 76 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP-----GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYST 76 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC-----CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecC
Confidence 35799999999999999999999999999999984 4689999999999999999864 7789999999999986
Q ss_pred hhhhhhhc------cCCCccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCCCCCcceeeEeecCCHHHHHHHHHH
Q 006641 193 RRQERAQQ------NVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEK 266 (637)
Q Consensus 193 ~~~~~~~~------~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~~g~srg~~FV~F~~~e~A~~Av~~ 266 (637)
.+...... .......+|||+||++.+|+++|+++|++||.|.+|.++++.. +++|||+|.+.++|.+|++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~---~~~afVef~~~~~A~~A~~~ 153 (481)
T TIGR01649 77 SQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN---VFQALVEFESVNSAQHAKAA 153 (481)
T ss_pred CcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC---ceEEEEEECCHHHHHHHHHH
Confidence 54322111 1122446899999999999999999999999999999987642 46899999999999999999
Q ss_pred HcCCCCCC--cEEEEeccch----------hh----------hHHHHHHHH----HHH----------------------
Q 006641 267 LNGTTNND--KVWYVGRAQK----------RA----------EREADLRAK----FEQ---------------------- 298 (637)
Q Consensus 267 lng~~~~g--~~l~v~~~~~----------~~----------~~~~~~~~~----~~~---------------------- 298 (637)
|||..+.+ ..|.+.++.. +. +++..+... ...
T Consensus 154 Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 233 (481)
T TIGR01649 154 LNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLA 233 (481)
T ss_pred hcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCC
Confidence 99999865 3666666542 11 001000000 000
Q ss_pred -----hhh--------------------------hhhhhcccccccccCCCC-CCCHHHHHHHHhhcCCeEEEEEeecCC
Q 006641 299 -----ERI--------------------------SRYEKLKGANLYLKNLDD-SINDEKLKELFSEFGTITSCKVMVDQH 346 (637)
Q Consensus 299 -----~~~--------------------------~~~~~~~~~~l~V~nL~~-~~t~e~L~~~F~~~G~i~~~~i~~d~~ 346 (637)
.+. ......++++|||+||++ .+|+++|+++|+.||.|.+|+|+.++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~- 312 (481)
T TIGR01649 234 PLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK- 312 (481)
T ss_pred cccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-
Confidence 000 000023567999999997 69999999999999999999999873
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccch
Q 006641 347 GFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRK 388 (637)
Q Consensus 347 g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~~ 388 (637)
+|||||+|.+.++|.+|++.|||..+.|++|+|.+++.+
T Consensus 313 ---~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 313 ---KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred ---CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 799999999999999999999999999999999998754
No 15
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=4.7e-35 Score=319.84 Aligned_cols=341 Identities=23% Similarity=0.322 Sum_probs=231.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeee
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIM 102 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~ 102 (637)
.....++|||+|||.++++++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|.+|| .|++..|.|++|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEe
Confidence 3456789999999999999999999999999999999999999999999999999999999999 599999999999998
Q ss_pred eccCCCccc----------cCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECC-CCCceeEEEEEecCHHHHHH
Q 006641 103 YSHRDPSIR----------KSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQN 171 (637)
Q Consensus 103 ~s~~~~~~~----------~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~-~g~skg~afV~F~~~e~A~~ 171 (637)
++....... .....+|||+|||..+++++|+++|+.||.|.+|.+..+. +|.++|||||+|.+.++|..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred ecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 865432111 1124689999999999999999999999999999999987 67999999999999999999
Q ss_pred HHHHhcCCeeCCeeeEEeeeehhhhhhhccCC-Cccce-EEecCCCccCCHHHHHHhhcccCCeeEEEEeeCCCCCccee
Q 006641 172 AIKMLNGMLINDKQVYVGLFVRRQERAQQNVS-PKFTN-VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCF 249 (637)
Q Consensus 172 Ai~~lng~~i~~~~l~V~~~~~~~~~~~~~~~-~~~~~-lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~~g~srg~ 249 (637)
|++.|++..+.++.|.|.+............. ..... -..+..........+...+...+......+ ....+ ...
T Consensus 244 A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~ 320 (457)
T TIGR01622 244 ALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLI-PGTGS--KIA 320 (457)
T ss_pred HHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccC-CCccc--hhh
Confidence 99999999999999999997632221110000 00000 000000011122223222222221100000 00000 000
Q ss_pred eEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccchhhhHHHHHHHHHHHhhh-hhhhhcccccccccCCCCCCC------
Q 006641 250 GFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERI-SRYEKLKGANLYLKNLDDSIN------ 322 (637)
Q Consensus 250 ~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~V~nL~~~~t------ 322 (637)
.+ ..+.........+........ +......... .........+|+|.||-...+
T Consensus 321 ~~-------------~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~ 381 (457)
T TIGR01622 321 LM-------------QKLQRDGIIDPNIPSRYATGA------LAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNF 381 (457)
T ss_pred hh-------------ccccccccccccccccccccc------cccccCCCCCCcccCCCCCcEEEEecCCCCcccccchH
Confidence 00 000000000000000000000 0000000000 000123567899999954443
Q ss_pred ----HHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccchH
Q 006641 323 ----DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKE 389 (637)
Q Consensus 323 ----~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~~~ 389 (637)
.+||++.|++||.|++|.|... .+.|++||+|.+.++|.+|++.|||+.|+|+.|.|.+.....
T Consensus 382 ~~~~~~dv~~e~~k~G~v~~v~v~~~---~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~ 449 (457)
T TIGR01622 382 DNEILDDVKEECSKYGGVVHIYVDTK---NSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVNDV 449 (457)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEEeCC---CCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHHH
Confidence 3789999999999999998643 357999999999999999999999999999999999988654
No 16
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=4.6e-35 Score=315.71 Aligned_cols=168 Identities=22% Similarity=0.451 Sum_probs=154.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeecc
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSH 105 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~ 105 (637)
..++|||+|||++++|++|+++|+.||+|.+|++++|+.|++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred CCCcc---------ccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECC-CCCceeEEEEEecCHHHHHHHHHH
Q 006641 106 RDPSI---------RKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKM 175 (637)
Q Consensus 106 ~~~~~---------~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~-~g~skg~afV~F~~~e~A~~Ai~~ 175 (637)
..+.. ......+|||+||++++++++|+++|+.||.|.+|++..+. ++.++|||||+|.+.++|.+|++.
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 33211 11234689999999999999999999999999999999987 678999999999999999999999
Q ss_pred hcCCeeCCeeeEEeeeeh
Q 006641 176 LNGMLINDKQVYVGLFVR 193 (637)
Q Consensus 176 lng~~i~~~~l~V~~~~~ 193 (637)
+|+..++|+.|+|.+...
T Consensus 266 mNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred hCCCeeCCeEEEEEecCC
Confidence 999999999999998764
No 17
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-33 Score=263.30 Aligned_cols=219 Identities=33% Similarity=0.555 Sum_probs=192.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeecc
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSH 105 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~ 105 (637)
.-++|||+||+.++||+-|..+|+++|+|++++|+.| .++|.|..
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-----------------------------------e~~v~wa~ 49 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-----------------------------------ELKVNWAT 49 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehh-----------------------------------hhcccccc
Confidence 4589999999999999999999999999999999887 44555543
Q ss_pred CCCccccCC---CccEEEeCCCccccHHHHHhHhhccCceeEEEEeECC-CCCceeEEEEEecCHHHHHHHHHHhcCCee
Q 006641 106 RDPSIRKSG---YGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKMLNGMLI 181 (637)
Q Consensus 106 ~~~~~~~~~---~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~i 181 (637)
......+.. ...|||+.|...|+.++|++.|..||.|.+++|++|. +++||||+||.|-++++|++||..|||.-|
T Consensus 50 ~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl 129 (321)
T KOG0148|consen 50 APGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL 129 (321)
T ss_pred CcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee
Confidence 221111111 2359999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred CCeeeEEeeeehhhhhhh----------ccCCCccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCCCCCcceeeE
Q 006641 182 NDKQVYVGLFVRRQERAQ----------QNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGF 251 (637)
Q Consensus 182 ~~~~l~V~~~~~~~~~~~----------~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~~g~srg~~F 251 (637)
+.|.|+..|+.++..+.. ...++..++|||+|++..++|++++..|++||.|.+|++.++ +||+|
T Consensus 130 G~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYaF 204 (321)
T KOG0148|consen 130 GRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYAF 204 (321)
T ss_pred ccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceEE
Confidence 999999999988764421 223567899999999999999999999999999999999998 57999
Q ss_pred eecCCHHHHHHHHHHHcCCCCCCcEEEEeccch
Q 006641 252 VNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQK 284 (637)
Q Consensus 252 V~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~~ 284 (637)
|.|+++|+|..||..+|+.++.|..+++.|.+.
T Consensus 205 VrF~tkEaAahAIv~mNntei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 205 VRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKE 237 (321)
T ss_pred EEecchhhHHHHHHHhcCceeCceEEEEecccc
Confidence 999999999999999999999999999988754
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=1.2e-32 Score=305.15 Aligned_cols=255 Identities=22% Similarity=0.328 Sum_probs=207.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcc------------CCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcC
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQV------------AQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALN 90 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~------------G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln 90 (637)
.....++|||+|||+++|+++|+++|+.+ +.|..+.+.++ +|||||+|.+.++|..|| .||
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~------kg~afVeF~~~e~A~~Al-~l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKE------KNFAFLEFRTVEEATFAM-ALD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCC------CCEEEEEeCCHHHHhhhh-cCC
Confidence 44567999999999999999999999874 35666665544 479999999999999999 699
Q ss_pred CCccCCcceeeeeccCCCc---------------------------cccCCCccEEEeCCCccccHHHHHhHhhccCcee
Q 006641 91 FMPINGKPIRIMYSHRDPS---------------------------IRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVL 143 (637)
Q Consensus 91 ~~~i~g~~iri~~s~~~~~---------------------------~~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~ 143 (637)
+..|.|+.|+|.+...... .......+|||+|||..+++++|+++|+.||.|.
T Consensus 244 g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~ 323 (509)
T TIGR01642 244 SIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLK 323 (509)
T ss_pred CeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCee
Confidence 9999999999975432110 0112235799999999999999999999999999
Q ss_pred EEEEeECC-CCCceeEEEEEecCHHHHHHHHHHhcCCeeCCeeeEEeeeehhhhhhh----------------------c
Q 006641 144 SCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQ----------------------Q 200 (637)
Q Consensus 144 s~~v~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~i~~~~l~V~~~~~~~~~~~----------------------~ 200 (637)
.+.++.+. +|.++|||||+|.+.++|..|++.|++..+.++.|.|.+......... .
T Consensus 324 ~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (509)
T TIGR01642 324 AFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQ 403 (509)
T ss_pred EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhcc
Confidence 99999886 899999999999999999999999999999999999988643211100 0
Q ss_pred cCCCccceEEecCCCcc--C--------CHHHHHHhhcccCCeeEEEEeeCC----CCCcceeeEeecCCHHHHHHHHHH
Q 006641 201 NVSPKFTNVYVNNLAET--V--------TDEDLKKIFGHFGTITSAIVMKDS----DGKSRCFGFVNFQSPDAAAAAVEK 266 (637)
Q Consensus 201 ~~~~~~~~lfV~nLp~~--~--------tee~L~~~F~~~G~i~~v~v~~d~----~g~srg~~FV~F~~~e~A~~Av~~ 266 (637)
........|+|.|+... + ..++|+++|++||.|.+|.|.++. .+...|++||+|.+.++|.+|+..
T Consensus 404 ~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~ 483 (509)
T TIGR01642 404 IGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEG 483 (509)
T ss_pred ccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHH
Confidence 00123467899998532 1 135789999999999999998753 245679999999999999999999
Q ss_pred HcCCCCCCcEEEEeccch
Q 006641 267 LNGTTNNDKVWYVGRAQK 284 (637)
Q Consensus 267 lng~~~~g~~l~v~~~~~ 284 (637)
|||..+.|+.|.+.+...
T Consensus 484 lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 484 MNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred cCCCEECCeEEEEEEeCH
Confidence 999999999999988654
No 19
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.2e-33 Score=284.38 Aligned_cols=278 Identities=25% Similarity=0.422 Sum_probs=231.1
Q ss_pred ccEEEeCCCccccHHHHHhHhhccCceeEEEEeECC-CCCceeEEEEEecCHHHHHHHHHHhcCCeeCCeeeEEeeeehh
Q 006641 116 GNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRR 194 (637)
Q Consensus 116 ~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~i~~~~l~V~~~~~~ 194 (637)
.+|||++||++++.++|.++|+.+|+|..|.++.+. ++.++||+||.|.=.|++.+|++..++..+.|+.+.|..+..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 589999999999999999999999999999999988 6789999999999999999999999999999999999987655
Q ss_pred hhhhhcc--------------------CCCccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCCCCCcceeeEeec
Q 006641 195 QERAQQN--------------------VSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNF 254 (637)
Q Consensus 195 ~~~~~~~--------------------~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~~g~srg~~FV~F 254 (637)
....... .....-.|.|.||||.+.+++|..+|+.||.|..+.|.+...|+..|||||.|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 4322000 01114579999999999999999999999999999999888898889999999
Q ss_pred CCHHHHHHHHHHHcCCCCCCcEEEEeccchhhhHHH-------HHHHHH----------------------------H--
Q 006641 255 QSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREA-------DLRAKF----------------------------E-- 297 (637)
Q Consensus 255 ~~~e~A~~Av~~lng~~~~g~~l~v~~~~~~~~~~~-------~~~~~~----------------------------~-- 297 (637)
.+..+|..|++.+|+..|.|+.+-|.|+..+...+. .++... +
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~ 245 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEET 245 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccc
Confidence 999999999999999999999999999855432211 000000 0
Q ss_pred H----------------hhhh-------------------hhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEe
Q 006641 298 Q----------------ERIS-------------------RYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVM 342 (637)
Q Consensus 298 ~----------------~~~~-------------------~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~ 342 (637)
. ...+ +.+...+.+|||+|||+++|+|+|.++|++||+|.++.|+
T Consensus 246 D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV 325 (678)
T KOG0127|consen 246 DGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIV 325 (678)
T ss_pred cccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEE
Confidence 0 0000 0001223579999999999999999999999999999999
Q ss_pred ecC-CCCcccEEEEEeCCHHHHHHHHHHh-----CC-ceeCCEEEEEEEccchHHHHH
Q 006641 343 VDQ-HGFSKGSGFAAFSMPEEATRALNEM-----NG-KMIGRKPLYVAVAQRKEERKA 393 (637)
Q Consensus 343 ~d~-~g~~~g~afV~f~~~~~A~~A~~~~-----~g-~~~~g~~l~V~~a~~~~~~~~ 393 (637)
.++ +++++|+|||.|.+..+|.+||... .| ..+.||.|.|.+|-.+.+-..
T Consensus 326 ~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~d 383 (678)
T KOG0127|consen 326 KDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKEAAD 383 (678)
T ss_pred eccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHHHHH
Confidence 995 8999999999999999999999876 34 678999999999988765443
No 20
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-32 Score=281.79 Aligned_cols=254 Identities=39% Similarity=0.652 Sum_probs=233.1
Q ss_pred cEEEeCCCccccHHHHHhHhhccCceeEEEEeECCCCCceeEEEEEecCHHHHHHHHHHhcCCeeCCeeeEEeeeehhhh
Q 006641 117 NVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQE 196 (637)
Q Consensus 117 ~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~~~~l~V~~~~~~~~ 196 (637)
.|||+ +++++..|+++|+.+|.|++++|..|. + +-|||||.|.+.++|++||+.+|...+.|+.+++-|..+...
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~ 77 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS 77 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc
Confidence 47888 999999999999999999999999998 6 999999999999999999999999999999999999766433
Q ss_pred hhhccCCCccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCCCCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcE
Q 006641 197 RAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKV 276 (637)
Q Consensus 197 ~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~ 276 (637)
. +||+||+++++.++|.++|+.||.|.+|.+..+.+| ++|| ||+|++.++|.+|++.+||..+.++.
T Consensus 78 ~-----------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kk 144 (369)
T KOG0123|consen 78 L-----------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKK 144 (369)
T ss_pred e-----------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCe
Confidence 2 999999999999999999999999999999999998 9999 99999999999999999999999999
Q ss_pred EEEeccchhhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEE
Q 006641 277 WYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAA 356 (637)
Q Consensus 277 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~ 356 (637)
++++....+.++...... . ...-+++||+|++.+++++.|.++|+.||.|+++.++.+..+++++|+||.
T Consensus 145 i~vg~~~~~~er~~~~~~-~---------~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~ 214 (369)
T KOG0123|consen 145 IYVGLFERKEEREAPLGE-Y---------KKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVN 214 (369)
T ss_pred eEEeeccchhhhcccccc-h---------hhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCcccee
Confidence 999999998887755443 1 112357999999999999999999999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHhCCceeCCEEEEEEEccchHHHHHHHHHh
Q 006641 357 FSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQ 398 (637)
Q Consensus 357 f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~~~~~~~~~~~~ 398 (637)
|.++++|.+|+..||+..++++.+.|.-++.+.++..-+...
T Consensus 215 f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~ 256 (369)
T KOG0123|consen 215 FENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAELKRK 256 (369)
T ss_pred ecChhHHHHHHHhccCCcCCccceeecccccchhhHHHHhhh
Confidence 999999999999999999999999999999877776655443
No 21
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=3.4e-32 Score=301.50 Aligned_cols=268 Identities=19% Similarity=0.315 Sum_probs=208.1
Q ss_pred CCccEEEeCCCccccHHHHHhHhhcc------------CceeEEEEeECCCCCceeEEEEEecCHHHHHHHHHHhcCCee
Q 006641 114 GYGNVFIKNLDTSIDNKALCDTFAAF------------GTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLI 181 (637)
Q Consensus 114 ~~~~i~V~nLp~~it~~~L~~~F~~~------------G~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~i 181 (637)
..++|||+|||..+++++|+++|..+ +.|..+.+ +..+|||||+|.+.++|..||+ |++..+
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-----~~~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-----NKEKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-----CCCCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 35689999999999999999999975 23333333 3468999999999999999995 999999
Q ss_pred CCeeeEEeeeehhhhhh-----------------------hccCCCccceEEecCCCccCCHHHHHHhhcccCCeeEEEE
Q 006641 182 NDKQVYVGLFVRRQERA-----------------------QQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIV 238 (637)
Q Consensus 182 ~~~~l~V~~~~~~~~~~-----------------------~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v 238 (637)
.|+.|.|.......... ........++|||+|||..+++++|+++|+.||.|..+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 99999986432211000 0001223578999999999999999999999999999999
Q ss_pred eeCC-CCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccchhhhHHHH-----------HHHHHHHhhhhhhhh
Q 006641 239 MKDS-DGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREAD-----------LRAKFEQERISRYEK 306 (637)
Q Consensus 239 ~~d~-~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 306 (637)
+.+. .|.++|||||+|.+.++|..|++.|++..+.++.|.|.++......... ...... ........
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 406 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALS-QSILQIGG 406 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccch-hhhccccC
Confidence 9885 6889999999999999999999999999999999999887432211000 000000 00001122
Q ss_pred cccccccccCCCCC--C--------CHHHHHHHHhhcCCeEEEEEeecC----CCCcccEEEEEeCCHHHHHHHHHHhCC
Q 006641 307 LKGANLYLKNLDDS--I--------NDEKLKELFSEFGTITSCKVMVDQ----HGFSKGSGFAAFSMPEEATRALNEMNG 372 (637)
Q Consensus 307 ~~~~~l~V~nL~~~--~--------t~e~L~~~F~~~G~i~~~~i~~d~----~g~~~g~afV~f~~~~~A~~A~~~~~g 372 (637)
.++.+|+|.|+... + ..++|+++|++||.|++|+|+++. .+.+.|++||+|.+.++|.+|+..|||
T Consensus 407 ~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnG 486 (509)
T TIGR01642 407 KPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNG 486 (509)
T ss_pred CCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCC
Confidence 35677999999532 1 236899999999999999999762 345689999999999999999999999
Q ss_pred ceeCCEEEEEEEccch
Q 006641 373 KMIGRKPLYVAVAQRK 388 (637)
Q Consensus 373 ~~~~g~~l~V~~a~~~ 388 (637)
..|+|+.|.|.|....
T Consensus 487 r~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 487 RKFNDRVVVAAFYGED 502 (509)
T ss_pred CEECCeEEEEEEeCHH
Confidence 9999999999998754
No 22
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=7.9e-31 Score=270.03 Aligned_cols=169 Identities=32% Similarity=0.532 Sum_probs=153.4
Q ss_pred CCccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCC-CCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEec
Q 006641 203 SPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGR 281 (637)
Q Consensus 203 ~~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~-~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~ 281 (637)
....++|||+|||+++|+++|+++|+.||.|.+|.|++|. +++++|||||+|.++++|.+|++.|++..+.++.|.|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 4467899999999999999999999999999999999985 689999999999999999999999999999999999998
Q ss_pred cchhhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCH
Q 006641 282 AQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMP 360 (637)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~ 360 (637)
+..... ....++|||+|||+++|+++|+++|++||+|++|+|++|+ ++++||||||+|.+.
T Consensus 184 a~p~~~------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~ 245 (346)
T TIGR01659 184 ARPGGE------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKR 245 (346)
T ss_pred cccccc------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCH
Confidence 754221 1134679999999999999999999999999999999985 899999999999999
Q ss_pred HHHHHHHHHhCCceeCC--EEEEEEEccchH
Q 006641 361 EEATRALNEMNGKMIGR--KPLYVAVAQRKE 389 (637)
Q Consensus 361 ~~A~~A~~~~~g~~~~g--~~l~V~~a~~~~ 389 (637)
++|++||+.||+..+.+ ++|+|++++.+.
T Consensus 246 e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 246 EEAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred HHHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 99999999999998865 799999998754
No 23
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=2.2e-30 Score=266.73 Aligned_cols=169 Identities=26% Similarity=0.489 Sum_probs=153.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeee
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIM 102 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~ 102 (637)
....+++|||+|||+++||++|+++|+.||+|++|+|++|..|++++|||||+|.+.++|++||+.||+..|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 33467999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCccccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECC-CCCceeEEEEEecCHHHHHHHHHHhcCCee
Q 006641 103 YSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKMLNGMLI 181 (637)
Q Consensus 103 ~s~~~~~~~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~i 181 (637)
|+..... .....+|||.|||+++++++|+++|+.||.|..|+|+.+. ++++++||||+|.+.++|++||+.||+..+
T Consensus 183 ~a~p~~~--~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~ 260 (346)
T TIGR01659 183 YARPGGE--SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIP 260 (346)
T ss_pred ccccccc--ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCcc
Confidence 9865432 2335689999999999999999999999999999999987 899999999999999999999999999988
Q ss_pred CC--eeeEEeeeeh
Q 006641 182 ND--KQVYVGLFVR 193 (637)
Q Consensus 182 ~~--~~l~V~~~~~ 193 (637)
.+ +.|.|.+...
T Consensus 261 ~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 261 EGGSQPLTVRLAEE 274 (346)
T ss_pred CCCceeEEEEECCc
Confidence 66 5677766543
No 24
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.97 E-value=4.8e-31 Score=276.48 Aligned_cols=328 Identities=23% Similarity=0.380 Sum_probs=264.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeecc
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSH 105 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~ 105 (637)
.+.+|||+|||+..+|++|..+| |||.|..++.|.+|...+++..+.|+-+.|..+.
T Consensus 226 etgrlf~RNLpyt~~eed~~~lf-----------------------a~v~~~~~~~avka~~~~D~k~fqgrmlhvlp~~ 282 (725)
T KOG0110|consen 226 ETGRLFVRNLPYTSTEEDLLKLF-----------------------AFVTFMFPEHAVKAYSELDGKVFQGRMLHVLPSK 282 (725)
T ss_pred hhhhhhhccCCccccHHHHHHhh-----------------------HHHhhhhhHHHHhhhhhccccccccceeeecCcc
Confidence 35789999999999999999999 8899999999999999999999999888865433
Q ss_pred CCCccc--------------------------------------------------------------------------
Q 006641 106 RDPSIR-------------------------------------------------------------------------- 111 (637)
Q Consensus 106 ~~~~~~-------------------------------------------------------------------------- 111 (637)
...+..
T Consensus 283 ~k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~~ 362 (725)
T KOG0110|consen 283 EKSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVVQ 362 (725)
T ss_pred hhhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhch
Confidence 211000
Q ss_pred -------------------cCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECCCCCceeEEEEEecCHHHHHHH
Q 006641 112 -------------------KSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNA 172 (637)
Q Consensus 112 -------------------~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~~g~skg~afV~F~~~e~A~~A 172 (637)
......|+|+|||..+..++|..+|..||.|..+.+ ++.|. -++|+|.+..+|..|
T Consensus 363 e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvll--p~~G~---~aiv~fl~p~eAr~A 437 (725)
T KOG0110|consen 363 EVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLL--PPGGT---GAIVEFLNPLEARKA 437 (725)
T ss_pred hhhhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccccceeec--Ccccc---eeeeeecCccchHHH
Confidence 000012899999999999999999999999988733 34443 599999999999999
Q ss_pred HHHhcCCeeCCeeeEEeeeehhhhh-------------hh--------------------c-----------cCCCccce
Q 006641 173 IKMLNGMLINDKQVYVGLFVRRQER-------------AQ--------------------Q-----------NVSPKFTN 208 (637)
Q Consensus 173 i~~lng~~i~~~~l~V~~~~~~~~~-------------~~--------------------~-----------~~~~~~~~ 208 (637)
...|....+....+++.|.....-. .. . ......+.
T Consensus 438 frklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~ 517 (725)
T KOG0110|consen 438 FRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETK 517 (725)
T ss_pred HHHhchhhhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchh
Confidence 9999888777777777664211000 00 0 00012244
Q ss_pred EEecCCCccCCHHHHHHhhcccCCeeEEEEeeCCCCC----cceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccch
Q 006641 209 VYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGK----SRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQK 284 (637)
Q Consensus 209 lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~~g~----srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~~ 284 (637)
|||+||.++++.+++...|...|.|.++.|.+.++.. |.|||||+|.+.++|..|++.|+|..++|+.|.+.++..
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~ 597 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISEN 597 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccC
Confidence 9999999999999999999999999999887776543 669999999999999999999999999999999999883
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeec-CCCCcccEEEEEeCCHHHH
Q 006641 285 RAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEA 363 (637)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d-~~g~~~g~afV~f~~~~~A 363 (637)
+...... ........+++|.|+|||+..+-.+++++|..||.|.+|+|... ..+.++|||||.|-++.+|
T Consensus 598 k~~~~~g---------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea 668 (725)
T KOG0110|consen 598 KPASTVG---------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREA 668 (725)
T ss_pred ccccccc---------cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHH
Confidence 3222111 11112234788999999999999999999999999999999987 4566799999999999999
Q ss_pred HHHHHHhCCceeCCEEEEEEEccchHH
Q 006641 364 TRALNEMNGKMIGRKPLYVAVAQRKEE 390 (637)
Q Consensus 364 ~~A~~~~~g~~~~g~~l~V~~a~~~~~ 390 (637)
.+|+..|..+.+-||.|.+.||+....
T Consensus 669 ~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 669 KNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred HHHHHhhcccceechhhheehhccchH
Confidence 999999999999999999999987754
No 25
>smart00517 PolyA C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. Involved in homodimerisation (either directly or indirectly)
Probab=99.96 E-value=1.8e-30 Score=192.28 Aligned_cols=64 Identities=55% Similarity=0.921 Sum_probs=62.1
Q ss_pred ChhhhhhhcccccchhhhccCCCcccchhhhcccCCHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 006641 557 SPDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTKVAEAMAVLQEA 620 (637)
Q Consensus 557 ~~~~~~~~~g~~~~~~~~~~~~~~~~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~ 620 (637)
+|++||++|||+|||+|++++|++||||||||||||++|||+||+|+++|++||+||++||++|
T Consensus 1 ~p~~qkq~LGE~Lyp~V~~~~p~~A~KITGMLLEmd~~ell~lle~~~~L~~kv~EA~~vl~~~ 64 (64)
T smart00517 1 PPQEQKQALGERLYPKVQALEPELAGKITGMLLEMDNSELLHLLESPELLRSKVDEALEVLKSH 64 (64)
T ss_pred CHHHHHHHHhHHHhHHHHhhCcccCCcCeeeeeCCCHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Confidence 5789999999999999999999999999999999999999999999999999999999999864
No 26
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.96 E-value=7.6e-28 Score=237.73 Aligned_cols=236 Identities=21% Similarity=0.264 Sum_probs=199.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHH-hccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceee
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLF-SQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI 101 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f-~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri 101 (637)
++...+++||.|||+++...+|+++| +..|+|+.|.++-|.. ++++|||.|+|+++|.+++|++.||...++||+|.|
T Consensus 40 ~~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~v 118 (608)
T KOG4212|consen 40 VAARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVV 118 (608)
T ss_pred cccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEE
Confidence 33457889999999999999999999 6788999999999986 788999999999999999999999999999999988
Q ss_pred eeccCCCccc----cCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECCCCCceeEEEEEecCHHHHHHHHHHhc
Q 006641 102 MYSHRDPSIR----KSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177 (637)
Q Consensus 102 ~~s~~~~~~~----~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~ln 177 (637)
.-.++..-.+ .....+.|+.++....-++.|...|+.-|.+..-.+..|.++.+++..+++|++.-.+..++...+
T Consensus 119 KEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfg 198 (608)
T KOG4212|consen 119 KEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFG 198 (608)
T ss_pred eccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhccc
Confidence 6543321111 122357999999999999999999999998888888888899999999999999988888887665
Q ss_pred CCeeCCeeeEEeeeehhhhhhhccCCCccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCCCCCcceeeEeecCCH
Q 006641 178 GMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSP 257 (637)
Q Consensus 178 g~~i~~~~l~V~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~~g~srg~~FV~F~~~ 257 (637)
......+.+.. + ..+....+||.||...+..+.|.+.|.-.|.|..+.+..|+.|.++||+.++|..+
T Consensus 199 l~~~Flr~~h~-f-----------~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hp 266 (608)
T KOG4212|consen 199 LSASFLRSLHI-F-----------SPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHP 266 (608)
T ss_pred chhhhhhhccC-C-----------CCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecch
Confidence 54444444432 1 12345779999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCC
Q 006641 258 DAAAAAVEKLNGTT 271 (637)
Q Consensus 258 e~A~~Av~~lng~~ 271 (637)
-.|..|+..+++..
T Consensus 267 veavqaIsml~~~g 280 (608)
T KOG4212|consen 267 VEAVQAISMLDRQG 280 (608)
T ss_pred HHHHHHHHhhccCC
Confidence 99999998887543
No 27
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.95 E-value=1.5e-27 Score=257.60 Aligned_cols=178 Identities=24% Similarity=0.427 Sum_probs=153.3
Q ss_pred CccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCC-CCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEecc
Q 006641 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRA 282 (637)
Q Consensus 204 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~-~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~ 282 (637)
...++|||+||++++++++|+++|++||.|.+|.++.|. .++++|||||+|.+.++|.+|++.+|+..+.|+.|.|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 456789999999999999999999999999999999985 6899999999999999999999999999999999999865
Q ss_pred chhhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHH
Q 006641 283 QKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPE 361 (637)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~ 361 (637)
............ ........++|||+||+.++++++|+++|+.||.|++|+|.+|. ++++||||||+|.+.+
T Consensus 185 ~~~p~a~~~~~~-------~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e 257 (612)
T TIGR01645 185 SNMPQAQPIIDM-------VQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQ 257 (612)
T ss_pred cccccccccccc-------ccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHH
Confidence 433211110000 00011234689999999999999999999999999999999995 6789999999999999
Q ss_pred HHHHHHHHhCCceeCCEEEEEEEccch
Q 006641 362 EATRALNEMNGKMIGRKPLYVAVAQRK 388 (637)
Q Consensus 362 ~A~~A~~~~~g~~~~g~~l~V~~a~~~ 388 (637)
+|.+|+..||+..++|+.|+|.++..+
T Consensus 258 ~A~kAI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 258 SQSEAIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred HHHHHHHHhCCCeeCCeEEEEEecCCC
Confidence 999999999999999999999988754
No 28
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.5e-27 Score=236.06 Aligned_cols=173 Identities=25% Similarity=0.499 Sum_probs=149.9
Q ss_pred CccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCC-CCCcceeeEeecCCHHHHHHHHHHHcCCC-CCC--cEEEE
Q 006641 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVEKLNGTT-NND--KVWYV 279 (637)
Q Consensus 204 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~-~g~srg~~FV~F~~~e~A~~Av~~lng~~-~~g--~~l~v 279 (637)
.+.-++||+.+|..|+|+||+++|++||.|.+|.+++|+ .+.++|||||.|.+.++|.+|+.+|+... +.| ..+.+
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 445689999999999999999999999999999999997 58899999999999999999999997654 444 45666
Q ss_pred eccchhhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCC
Q 006641 280 GRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSM 359 (637)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~ 359 (637)
.++....++. ....+|||+-|+..+||.+++++|++||.|++|.|++|+.+.|||||||+|++
T Consensus 112 k~Ad~E~er~-----------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fst 174 (510)
T KOG0144|consen 112 KYADGERERI-----------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFST 174 (510)
T ss_pred cccchhhhcc-----------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEeh
Confidence 6665533322 23457999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcee---CCEEEEEEEccchHHHHH
Q 006641 360 PEEATRALNEMNGKMI---GRKPLYVAVAQRKEERKA 393 (637)
Q Consensus 360 ~~~A~~A~~~~~g~~~---~g~~l~V~~a~~~~~~~~ 393 (637)
.|.|..||++|||..- ...+|.|+||+++.+|..
T Consensus 175 ke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 175 KEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred HHHHHHHHHhhccceeeccCCCceEEEecccCCCchH
Confidence 9999999999999653 467899999998766543
No 29
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.94 E-value=1.2e-25 Score=221.17 Aligned_cols=350 Identities=21% Similarity=0.290 Sum_probs=260.1
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCC--CccCCcce
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNF--MPINGKPI 99 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~--~~i~g~~i 99 (637)
+...+++.|.++|||++++|+||.+++..||.|..+.+.+.+. .||++|.+.+.|..-+..... -.+.|++|
T Consensus 23 ~~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~ 96 (492)
T KOG1190|consen 23 SMAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPI 96 (492)
T ss_pred cccCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcce
Confidence 3455789999999999999999999999999999999988875 799999999988874432221 24567888
Q ss_pred eeeeccCCC-------c------------------------cccCC-------CccEEEeCCCccccHHHHHhHhhccCc
Q 006641 100 RIMYSHRDP-------S------------------------IRKSG-------YGNVFIKNLDTSIDNKALCDTFAAFGT 141 (637)
Q Consensus 100 ri~~s~~~~-------~------------------------~~~~~-------~~~i~V~nLp~~it~~~L~~~F~~~G~ 141 (637)
.|.||.... . ....+ .-.++|.|+-..++-+-|+.+|++||.
T Consensus 97 yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~ 176 (492)
T KOG1190|consen 97 YIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGF 176 (492)
T ss_pred eehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcce
Confidence 887754210 0 00001 123889999999999999999999999
Q ss_pred eeEEEEeECCCCCceeEEEEEecCHHHHHHHHHHhcCCeeCCee--eEEeeee---------hhhhhh--------h---
Q 006641 142 VLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQ--VYVGLFV---------RRQERA--------Q--- 199 (637)
Q Consensus 142 I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~~~~--l~V~~~~---------~~~~~~--------~--- 199 (637)
|+.+.-....++ =.|+|+|.+.+.|..|...|+|.-|.+.+ +++.+.. ..+.|. .
T Consensus 177 VlKIiTF~Knn~---FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~ 253 (492)
T KOG1190|consen 177 VLKIITFTKNNG---FQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQ 253 (492)
T ss_pred eEEEEEEecccc---hhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccc
Confidence 988776643222 24999999999999999999998775544 4443321 000000 0
Q ss_pred ------------------------------------ccCCC-ccceEEecCCCc-cCCHHHHHHhhcccCCeeEEEEeeC
Q 006641 200 ------------------------------------QNVSP-KFTNVYVNNLAE-TVTDEDLKKIFGHFGTITSAIVMKD 241 (637)
Q Consensus 200 ------------------------------------~~~~~-~~~~lfV~nLp~-~~tee~L~~~F~~~G~i~~v~v~~d 241 (637)
..... ....|.|.||.. .+|.+.|..+|+-||.|..+.++..
T Consensus 254 p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~n 333 (492)
T KOG1190|consen 254 PSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYN 333 (492)
T ss_pred cccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeec
Confidence 00000 136688899865 6899999999999999999999887
Q ss_pred CCCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccchhhh-------HHHHHHHHHHHhhhhhh----------
Q 006641 242 SDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAE-------READLRAKFEQERISRY---------- 304 (637)
Q Consensus 242 ~~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~~~~~-------~~~~~~~~~~~~~~~~~---------- 304 (637)
+. -.++|++.+...|.-|++.|+|..+.|+.|++..++...- ++..+...+......+.
T Consensus 334 kk----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~n 409 (492)
T KOG1190|consen 334 KK----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQN 409 (492)
T ss_pred CC----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccc
Confidence 43 3699999999999999999999999999999998854321 11111112211111111
Q ss_pred hhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC-EEEEEE
Q 006641 305 EKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGR-KPLYVA 383 (637)
Q Consensus 305 ~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g-~~l~V~ 383 (637)
-.+++.+|+..|+|.+++||+|+++|..-|...+..... ++.+.++.+.+.+.|+|..|+..+|.+.++. ..|+|+
T Consensus 410 i~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff---~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvS 486 (492)
T KOG1190|consen 410 IFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF---QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVS 486 (492)
T ss_pred cCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec---CCCcceeecccCChhHhhhhccccccccCCCCceEEEE
Confidence 124566899999999999999999999988765554433 3347899999999999999999999999974 589999
Q ss_pred Eccc
Q 006641 384 VAQR 387 (637)
Q Consensus 384 ~a~~ 387 (637)
|++.
T Consensus 487 FSks 490 (492)
T KOG1190|consen 487 FSKS 490 (492)
T ss_pred eecc
Confidence 9875
No 30
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.94 E-value=1.2e-25 Score=237.52 Aligned_cols=170 Identities=28% Similarity=0.474 Sum_probs=150.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCC--cceeeee
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPING--KPIRIMY 103 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g--~~iri~~ 103 (637)
..++|||+|||.++++++|+++|+.||.|..++++++..++.++|||||+|.+.++|++|++.||+..+.| ++|++.|
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 45789999999999999999999999999999999999888999999999999999999999999998877 5677777
Q ss_pred ccCCCcc------------------c------------------------------------------------------
Q 006641 104 SHRDPSI------------------R------------------------------------------------------ 111 (637)
Q Consensus 104 s~~~~~~------------------~------------------------------------------------------ 111 (637)
+...... +
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 6422100 0
Q ss_pred ------------------cCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECC-CCCceeEEEEEecCHHHHHHH
Q 006641 112 ------------------KSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNA 172 (637)
Q Consensus 112 ------------------~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~-~g~skg~afV~F~~~e~A~~A 172 (637)
.....+|||+|||.++++++|+++|+.||.|.+|+|+.|. ++.++|||||+|.+.++|..|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 0001159999999999999999999999999999999998 999999999999999999999
Q ss_pred HHHhcCCeeCCeeeEEeeeehhh
Q 006641 173 IKMLNGMLINDKQVYVGLFVRRQ 195 (637)
Q Consensus 173 i~~lng~~i~~~~l~V~~~~~~~ 195 (637)
++.|||..++|+.|.|.|...+.
T Consensus 328 i~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 328 ILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHhCCCEECCeEEEEEEccCCC
Confidence 99999999999999999977654
No 31
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=1.5e-26 Score=204.29 Aligned_cols=171 Identities=32% Similarity=0.619 Sum_probs=153.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeecc
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSH 105 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~ 105 (637)
...+|||+||++.++|+.|+|+|-++|+|.+|++.+|+.|....|||||+|.+.|||+-|++-||...+.||+||+..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred CCCccccCCCccEEEeCCCccccHHHHHhHhhccCceeE-EEEeECC-CCCceeEEEEEecCHHHHHHHHHHhcCCeeCC
Q 006641 106 RDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS-CKVAIDS-NGQSKGYGFVQFENEEAAQNAIKMLNGMLIND 183 (637)
Q Consensus 106 ~~~~~~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s-~~v~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~i~~ 183 (637)
....-... ..++||+||.++++++.|+++|+.||.+.+ -++++++ +|++++++||.|.+.|.+.+|++.+|+..+.+
T Consensus 88 ~~~~nl~v-ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~n 166 (203)
T KOG0131|consen 88 AHQKNLDV-GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCN 166 (203)
T ss_pred cccccccc-cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcC
Confidence 22211111 268999999999999999999999998765 4777777 68999999999999999999999999999999
Q ss_pred eeeEEeeeehhhhh
Q 006641 184 KQVYVGLFVRRQER 197 (637)
Q Consensus 184 ~~l~V~~~~~~~~~ 197 (637)
+.+.|.++..+...
T Consensus 167 r~itv~ya~k~~~k 180 (203)
T KOG0131|consen 167 RPITVSYAFKKDTK 180 (203)
T ss_pred CceEEEEEEecCCC
Confidence 99999998765443
No 32
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=8.5e-26 Score=218.49 Aligned_cols=271 Identities=22% Similarity=0.457 Sum_probs=214.5
Q ss_pred ccEEEeCCCccccHHHHHhHhhccCceeEEEEeECC-CCCceeEEEEEecCHHHHHHHHHHhcCCeeCCeeeEEeeeehh
Q 006641 116 GNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRR 194 (637)
Q Consensus 116 ~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~i~~~~l~V~~~~~~ 194 (637)
++|||+.|..++.++.|+..|..||+|.++.+.+|+ +++.||||||+|+-.|.|..|++.+|+..++|+.|.|.....-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 469999999999999999999999999999999999 9999999999999999999999999999999999999854321
Q ss_pred hhh-----hhccCCCccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCCC-CCcceeeEeecCCHHHHHHHHHHHc
Q 006641 195 QER-----AQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSD-GKSRCFGFVNFQSPDAAAAAVEKLN 268 (637)
Q Consensus 195 ~~~-----~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~~-g~srg~~FV~F~~~e~A~~Av~~ln 268 (637)
... ...+....+++|||..+.++.+++||+..|+.||+|..|.+.++.+ +..|||+|++|.+..+...|+..+|
T Consensus 194 pQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN 273 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN 273 (544)
T ss_pred cccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcc
Confidence 111 1123346789999999999999999999999999999999999986 5689999999999999999999999
Q ss_pred CCCCCCcEEEEeccchhhh-------------------------------------------------------------
Q 006641 269 GTTNNDKVWYVGRAQKRAE------------------------------------------------------------- 287 (637)
Q Consensus 269 g~~~~g~~l~v~~~~~~~~------------------------------------------------------------- 287 (637)
-.+++|.-|+|+.+.....
T Consensus 274 lFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~ 353 (544)
T KOG0124|consen 274 LFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLP 353 (544)
T ss_pred hhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCcc
Confidence 9999999988887611100
Q ss_pred ---------------------------------------------------HHHHHHHHHHH-------hhh--------
Q 006641 288 ---------------------------------------------------READLRAKFEQ-------ERI-------- 301 (637)
Q Consensus 288 ---------------------------------------------------~~~~~~~~~~~-------~~~-------- 301 (637)
...++..+.+. ...
T Consensus 354 qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sAR 433 (544)
T KOG0124|consen 354 QAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSAR 433 (544)
T ss_pred ccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHH
Confidence 00000000000 000
Q ss_pred ----h-hhhhcccccccccCC--CCCCC---HHHHHHHHhhcCCeEEEEEeecCCCCc-----ccEEEEEeCCHHHHHHH
Q 006641 302 ----S-RYEKLKGANLYLKNL--DDSIN---DEKLKELFSEFGTITSCKVMVDQHGFS-----KGSGFAAFSMPEEATRA 366 (637)
Q Consensus 302 ----~-~~~~~~~~~l~V~nL--~~~~t---~e~L~~~F~~~G~i~~~~i~~d~~g~~-----~g~afV~f~~~~~A~~A 366 (637)
. -..+..++.+.++|. |.+++ +.+|++.+++||.|.+|.|...+.+.. ----||+|+...++.+|
T Consensus 434 hlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~ra 513 (544)
T KOG0124|consen 434 HLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRA 513 (544)
T ss_pred HHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHH
Confidence 0 001233455788887 34444 468999999999999999887643321 12369999999999999
Q ss_pred HHHhCCceeCCEEEEEEEcc
Q 006641 367 LNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 367 ~~~~~g~~~~g~~l~V~~a~ 386 (637)
+++|+|+.|+||++...+.+
T Consensus 514 k~ALdGRfFgGr~VvAE~YD 533 (544)
T KOG0124|consen 514 KQALDGRFFGGRKVVAEVYD 533 (544)
T ss_pred HHhhccceecCceeehhhhh
Confidence 99999999999988766543
No 33
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.93 E-value=2.3e-25 Score=233.99 Aligned_cols=262 Identities=25% Similarity=0.399 Sum_probs=219.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeee
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIM 102 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~ 102 (637)
.-+..+.|+|+|||..+.+++|.+.|..||+|..|.+.+... -|+|.|.++.+|.+|++.|.+..+..-++++.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G~------~aiv~fl~p~eAr~Afrklaysr~k~~plyle 454 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGGT------GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLE 454 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecCcccc------eeeeeecCccchHHHHHHhchhhhccCccccc
Confidence 345578999999999999999999999999999996654332 49999999999999999999999999999988
Q ss_pred eccCCCcc----------------------c--------------------------cCCCccEEEeCCCccccHHHHHh
Q 006641 103 YSHRDPSI----------------------R--------------------------KSGYGNVFIKNLDTSIDNKALCD 134 (637)
Q Consensus 103 ~s~~~~~~----------------------~--------------------------~~~~~~i~V~nLp~~it~~~L~~ 134 (637)
|...+.-. + ....+.|||+||+++.+.++|..
T Consensus 455 ~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~ 534 (725)
T KOG0110|consen 455 WAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLED 534 (725)
T ss_pred cChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHH
Confidence 86543110 0 00012399999999999999999
Q ss_pred HhhccCceeEEEEeECCCCC----ceeEEEEEecCHHHHHHHHHHhcCCeeCCeeeEEeeeehhhhhh---hccCCCccc
Q 006641 135 TFAAFGTVLSCKVAIDSNGQ----SKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERA---QQNVSPKFT 207 (637)
Q Consensus 135 ~F~~~G~I~s~~v~~~~~g~----skg~afV~F~~~e~A~~Ai~~lng~~i~~~~l~V~~~~~~~~~~---~~~~~~~~~ 207 (637)
+|...|.|+++.|...++.. |.|||||+|.+.++|..|++.|+|..+.|+.|.|.++..+.... ........+
T Consensus 535 ~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~t 614 (725)
T KOG0110|consen 535 LFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGT 614 (725)
T ss_pred HHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccc
Confidence 99999999999998876553 56999999999999999999999999999999999887222111 111122357
Q ss_pred eEEecCCCccCCHHHHHHhhcccCCeeEEEEeeC-CCCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccchhh
Q 006641 208 NVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRA 286 (637)
Q Consensus 208 ~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d-~~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~~~~ 286 (637)
+|+|+|+|+..+..+++.+|..||.+.+|.+.+. ..+.+||||||.|-++.+|..|+++|....+-|+.|.+.|+....
T Consensus 615 KIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 615 KILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred eeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 9999999999999999999999999999999877 346679999999999999999999999999999999999998766
Q ss_pred hHHH
Q 006641 287 EREA 290 (637)
Q Consensus 287 ~~~~ 290 (637)
..++
T Consensus 695 ~~e~ 698 (725)
T KOG0110|consen 695 TMEA 698 (725)
T ss_pred HHHH
Confidence 6433
No 34
>PF00658 PABP: Poly-adenylate binding protein, unique domain; InterPro: IPR002004 The polyadenylate-binding protein (PABP) has a conserved C-terminal domain (PABC), which is also found in the hyperplastic discs protein (HYD) family of ubiquitin ligases that contain HECT domains (IPR000569 from INTERPRO) []. PABP recognises the 3' mRNA poly(A) tail and plays an essential role in eukaryotic translation initiation and mRNA stabilisation/degradation. PABC domains of PABP are peptide-binding domains that mediate PABP homo-oligomerisation and protein-protein interactions. In mammals, the PABC domain of PABP functions to recruit several different translation factors to the mRNA poly(A) tail [].; GO: 0003723 RNA binding; PDB: 3KUR_E 1JH4_A 2RQH_B 3KUI_A 3KUS_A 3KUJ_A 3KTR_A 2X04_A 3PTH_A 1JGN_A ....
Probab=99.93 E-value=2.5e-27 Score=183.13 Aligned_cols=70 Identities=60% Similarity=0.914 Sum_probs=68.3
Q ss_pred cchhhhhcCChhhhhhhcccccchhhhccCCCcccchhhhcccCCHHHHHHhhCChHHHHHHHHHHHHHH
Q 006641 548 TLTSALASASPDDRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTKVAEAMAVL 617 (637)
Q Consensus 548 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~~ 617 (637)
.+++.|+++++++||++|||+|||+|.+++|++|+||||||||||++||++||+|+++|++||+||++||
T Consensus 3 ~~~~~la~~~~~~qk~~LGe~Ly~~V~~~~p~~A~KITGMLLe~~~~ell~ll~~~~~L~~kv~eA~~vL 72 (72)
T PF00658_consen 3 LTASALASASPEQQKQILGERLYPLVQAIYPELAGKITGMLLEMDNSELLHLLEDPELLREKVQEAIEVL 72 (72)
T ss_dssp TSHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred chHHHHhcCCHHHHHHHHhccccHHHHHhCcchhHHHHHHHhcCCHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 3689999999999999999999999999999999999999999999999999999999999999999997
No 35
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.92 E-value=8.4e-25 Score=224.08 Aligned_cols=329 Identities=22% Similarity=0.311 Sum_probs=227.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeee
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIM 102 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~ 102 (637)
..+..+++|+--|...+++-+|+++|+.+|+|..|+++.|+.+++++|.|||+|.+.+....|| .|.+..+.|.+|.|.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEec
Confidence 4455689999999999999999999999999999999999999999999999999999999999 899999999999998
Q ss_pred eccCCC--------cccc---CC-CccEEEeCCCccccHHHHHhHhhccCceeEEEEeECC-CCCceeEEEEEecCHHHH
Q 006641 103 YSHRDP--------SIRK---SG-YGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAA 169 (637)
Q Consensus 103 ~s~~~~--------~~~~---~~-~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~-~g~skg~afV~F~~~e~A 169 (637)
.+.... .... .+ ...++|+||..+++++.|+.+|+.||.|..+.+..|. +|.++||+||+|.+.++|
T Consensus 254 ~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~a 333 (549)
T KOG0147|consen 254 LSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDA 333 (549)
T ss_pred ccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHH
Confidence 765332 1110 11 1238999999999999999999999999999999997 999999999999999999
Q ss_pred HHHHHHhcCCeeCCeeeEEeeeehhhhhhhcc-CCCccceEEecCCCccCC-HHHHHHhhcccCCeeEEEEeeCCCCCcc
Q 006641 170 QNAIKMLNGMLINDKQVYVGLFVRRQERAQQN-VSPKFTNVYVNNLAETVT-DEDLKKIFGHFGTITSAIVMKDSDGKSR 247 (637)
Q Consensus 170 ~~Ai~~lng~~i~~~~l~V~~~~~~~~~~~~~-~~~~~~~lfV~nLp~~~t-ee~L~~~F~~~G~i~~v~v~~d~~g~sr 247 (637)
..|++.|||.++.|+.|.|..-..+....... ....+.-+=-.+|+.... ...|...|.+.-.+. +.
T Consensus 334 r~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~---~~-------- 402 (549)
T KOG0147|consen 334 RKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRS---LP-------- 402 (549)
T ss_pred HHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCcc---cc--------
Confidence 99999999999999999998766544332110 000000001112222111 122332222211110 10
Q ss_pred eeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccchhhhHHHHHHHHHHHhhhhhhhhcccccccccCCCC--C-----
Q 006641 248 CFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDD--S----- 320 (637)
Q Consensus 248 g~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~--~----- 320 (637)
.+...|..++..+......+-...+.-..+... ...-..++.|+.++|+=+ .
T Consensus 403 -------s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~--------------~p~~~i~t~C~lL~nMFdpstete~n 461 (549)
T KOG0147|consen 403 -------STAISALLLLAKLASAAQFNGVVRVRSVDPADA--------------SPAFDIPTQCLLLSNMFDPSTETEPN 461 (549)
T ss_pred -------chhhhHHHhccccchHHhhcCCcCccccCcccc--------------ccccCCccHHHHHhhcCCcccccCcc
Confidence 111112222211111111110000000000000 000013455677777621 1
Q ss_pred CC---HHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccch
Q 006641 321 IN---DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRK 388 (637)
Q Consensus 321 ~t---~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~~ 388 (637)
|+ .||+.+.+++||.|..|.|-.. |-||.||.|.+.++|..|+.+|||+.|.||.|..+|-...
T Consensus 462 ~d~eI~edV~Eec~k~g~v~hi~vd~n----s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~ 528 (549)
T KOG0147|consen 462 WDQEIREDVIEECGKHGKVCHIFVDKN----SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLE 528 (549)
T ss_pred hhhHHHHHHHHHHHhcCCeeEEEEccC----CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehh
Confidence 11 2788889999999988877543 3599999999999999999999999999999999887644
No 36
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=3.4e-24 Score=234.26 Aligned_cols=177 Identities=28% Similarity=0.413 Sum_probs=151.8
Q ss_pred ccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCC-CCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccc
Q 006641 205 KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQ 283 (637)
Q Consensus 205 ~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~-~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~ 283 (637)
..++|||+|||..+++++|+++|++||.|.+|.++.+. .++++|||||+|.+.++|.+|+ .+++..+.|+.|.+....
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEeecc
Confidence 45789999999999999999999999999999999985 5889999999999999999999 589999999999998765
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHH
Q 006641 284 KRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEE 362 (637)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~ 362 (637)
........... ..........+|||+||+..+|+++|+++|++||.|.+|.++.|. +|+++|||||+|.+.++
T Consensus 167 ~~~~~~~~~~~------~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~ 240 (457)
T TIGR01622 167 AEKNRAAKAAT------HQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEE 240 (457)
T ss_pred hhhhhhhhccc------ccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 43322211000 000011225789999999999999999999999999999999985 56899999999999999
Q ss_pred HHHHHHHhCCceeCCEEEEEEEccch
Q 006641 363 ATRALNEMNGKMIGRKPLYVAVAQRK 388 (637)
Q Consensus 363 A~~A~~~~~g~~~~g~~l~V~~a~~~ 388 (637)
|.+|++.|||..|.|++|.|.++...
T Consensus 241 A~~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 241 AKEALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred HHHHHHhcCCcEECCEEEEEEEccCC
Confidence 99999999999999999999998843
No 37
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=6.4e-24 Score=205.57 Aligned_cols=253 Identities=20% Similarity=0.412 Sum_probs=209.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeeccC
Q 006641 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHR 106 (637)
Q Consensus 27 ~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~~ 106 (637)
.++||||.|..++.|+.|+..|..||+|++|.+.-|..|++++|||||+|+-+|.|.-|++.+|+..+.||.|+|.....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999985443
Q ss_pred CCcc---------ccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECC-CCCceeEEEEEecCHHHHHHHHHHh
Q 006641 107 DPSI---------RKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKML 176 (637)
Q Consensus 107 ~~~~---------~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~-~g~skg~afV~F~~~e~A~~Ai~~l 176 (637)
-+.. .-....+|||..+.++.++++|+.+|+.||.|++|++..+. .+..|||+|++|.+..+-..|+..+
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 2211 11224579999999999999999999999999999999998 5679999999999999999999999
Q ss_pred cCCeeCCeeeEEeeeehhhhh-----------------------------------------------------------
Q 006641 177 NGMLINDKQVYVGLFVRRQER----------------------------------------------------------- 197 (637)
Q Consensus 177 ng~~i~~~~l~V~~~~~~~~~----------------------------------------------------------- 197 (637)
|-+.++|..++|..+......
T Consensus 273 NlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l 352 (544)
T KOG0124|consen 273 NLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTL 352 (544)
T ss_pred chhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCc
Confidence 999999999999765211000
Q ss_pred ----------------------------------------------------hhcc------------------------
Q 006641 198 ----------------------------------------------------AQQN------------------------ 201 (637)
Q Consensus 198 ----------------------------------------------------~~~~------------------------ 201 (637)
..++
T Consensus 353 ~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sA 432 (544)
T KOG0124|consen 353 PQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSA 432 (544)
T ss_pred cccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccH
Confidence 0000
Q ss_pred ---------CCCccceEEecCC--CccCCH---HHHHHhhcccCCeeEEEEeeCCCCCc-----ceeeEeecCCHHHHHH
Q 006641 202 ---------VSPKFTNVYVNNL--AETVTD---EDLKKIFGHFGTITSAIVMKDSDGKS-----RCFGFVNFQSPDAAAA 262 (637)
Q Consensus 202 ---------~~~~~~~lfV~nL--p~~~te---e~L~~~F~~~G~i~~v~v~~d~~g~s-----rg~~FV~F~~~e~A~~ 262 (637)
....++.+.++|+ |.++++ .++.+.+.+||.|.++.+...+.+.. ---.||+|....++.+
T Consensus 433 RhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~r 512 (544)
T KOG0124|consen 433 RHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHR 512 (544)
T ss_pred HHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHH
Confidence 0112244667776 556554 58899999999999998877654331 1236999999999999
Q ss_pred HHHHHcCCCCCCcEEEE
Q 006641 263 AVEKLNGTTNNDKVWYV 279 (637)
Q Consensus 263 Av~~lng~~~~g~~l~v 279 (637)
|.++|+|..+.|+++..
T Consensus 513 ak~ALdGRfFgGr~VvA 529 (544)
T KOG0124|consen 513 AKQALDGRFFGGRKVVA 529 (544)
T ss_pred HHHhhccceecCceeeh
Confidence 99999999999998764
No 38
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=3.4e-24 Score=198.79 Aligned_cols=170 Identities=34% Similarity=0.619 Sum_probs=155.5
Q ss_pred CccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCC-CCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEecc
Q 006641 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRA 282 (637)
Q Consensus 204 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~-~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~ 282 (637)
...++|.|.-||..+|+|+++.+|...|+|++|.+++|+ .|.+-||+||+|.++++|++|+..+||..+..+.|.|.++
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 456899999999999999999999999999999999998 5999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHH
Q 006641 283 QKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPE 361 (637)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~ 361 (637)
.+.+. ...+.+|||.+||...|..+|+++|++||.|..-+|+.|. +|.+||.|||.|+..+
T Consensus 119 RPSs~------------------~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~ 180 (360)
T KOG0145|consen 119 RPSSD------------------SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRI 180 (360)
T ss_pred cCChh------------------hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchh
Confidence 77542 2356789999999999999999999999999999999985 8999999999999999
Q ss_pred HHHHHHHHhCCceeC--CEEEEEEEccchHHH
Q 006641 362 EATRALNEMNGKMIG--RKPLYVAVAQRKEER 391 (637)
Q Consensus 362 ~A~~A~~~~~g~~~~--g~~l~V~~a~~~~~~ 391 (637)
+|+.||+.|||..-. ..+|.|+||......
T Consensus 181 EAe~AIk~lNG~~P~g~tepItVKFannPsq~ 212 (360)
T KOG0145|consen 181 EAEEAIKGLNGQKPSGCTEPITVKFANNPSQK 212 (360)
T ss_pred HHHHHHHhccCCCCCCCCCCeEEEecCCcccc
Confidence 999999999998764 578999999876433
No 39
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.89 E-value=4.4e-23 Score=182.47 Aligned_cols=168 Identities=31% Similarity=0.492 Sum_probs=151.4
Q ss_pred ccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCC-CCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccc
Q 006641 205 KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQ 283 (637)
Q Consensus 205 ~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~-~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~ 283 (637)
...+|||+||+..++++-|.++|-+.|+|.++.+.+|. ....+||||++|.+.++|+.|++-||...+-|+.|++..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 45789999999999999999999999999999999997 45689999999999999999999999999999999998886
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEE-EEeecC-CCCcccEEEEEeCCHH
Q 006641 284 KRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSC-KVMVDQ-HGFSKGSGFAAFSMPE 361 (637)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~-~i~~d~-~g~~~g~afV~f~~~~ 361 (637)
.... +..-+.+|||+||++++++..|.+.|+.||.+.+. +|++|+ +|.++|||||.|.+.+
T Consensus 88 ~~~~-----------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfe 150 (203)
T KOG0131|consen 88 AHQK-----------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFE 150 (203)
T ss_pred cccc-----------------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHH
Confidence 2211 12245789999999999999999999999998775 889986 5889999999999999
Q ss_pred HHHHHHHHhCCceeCCEEEEEEEccchH
Q 006641 362 EATRALNEMNGKMIGRKPLYVAVAQRKE 389 (637)
Q Consensus 362 ~A~~A~~~~~g~~~~g~~l~V~~a~~~~ 389 (637)
.+.+|+..|||..++.+++.|+++.+++
T Consensus 151 asd~ai~s~ngq~l~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 151 ASDAAIGSMNGQYLCNRPITVSYAFKKD 178 (203)
T ss_pred HHHHHHHHhccchhcCCceEEEEEEecC
Confidence 9999999999999999999999998764
No 40
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=1.5e-22 Score=188.57 Aligned_cols=187 Identities=30% Similarity=0.483 Sum_probs=157.9
Q ss_pred ccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCCCCCcceeeEeecCCHHHHHHHHHHHcCCCC---CCcEEEEec
Q 006641 205 KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTN---NDKVWYVGR 281 (637)
Q Consensus 205 ~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~~g~srg~~FV~F~~~e~A~~Av~~lng~~~---~g~~l~v~~ 281 (637)
..++|||+-|.+.-+|||++.+|..||.|++|.+.+..+|.+|||+||.|.++.+|..||..|+|... ....|.|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 45789999999999999999999999999999999999999999999999999999999999998763 245688888
Q ss_pred cchhhhHHHHHHHHH-----------------------------------------------------------------
Q 006641 282 AQKRAEREADLRAKF----------------------------------------------------------------- 296 (637)
Q Consensus 282 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 296 (637)
+....+|........
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 765555431100000
Q ss_pred --------------------------------------------------------------------------------
Q 006641 297 -------------------------------------------------------------------------------- 296 (637)
Q Consensus 297 -------------------------------------------------------------------------------- 296 (637)
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence
Q ss_pred ---------------HHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCH
Q 006641 297 ---------------EQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMP 360 (637)
Q Consensus 297 ---------------~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~ 360 (637)
..........+.+|||||-.||.+..|.+|...|-+||.|.+.+|+.|+ ++.||+||||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 0000001123568999999999999999999999999999999999995 899999999999999
Q ss_pred HHHHHHHHHhCCceeCCEEEEEEEccchHHH
Q 006641 361 EEATRALNEMNGKMIGRKPLYVAVAQRKEER 391 (637)
Q Consensus 361 ~~A~~A~~~~~g~~~~g~~l~V~~a~~~~~~ 391 (637)
.+|+.||+.|||..|+-|+|+|.+.++|+..
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDAN 368 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCccccC
Confidence 9999999999999999999999999988754
No 41
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.87 E-value=5.1e-20 Score=179.35 Aligned_cols=339 Identities=21% Similarity=0.177 Sum_probs=257.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHH--cCCCccCCcceee
Q 006641 24 GYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA--LNFMPINGKPIRI 101 (637)
Q Consensus 24 ~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~--ln~~~i~g~~iri 101 (637)
+..+..|.|++|...++|.+|.+-++.||+|.-|.+...++ .|.|+|++.+.|+.|+.- -|...|.|+..-+
T Consensus 28 ~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r------~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~ 101 (494)
T KOG1456|consen 28 PNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR------QALVEFEDIEGAKNCVNFAADNQIYIAGQQALF 101 (494)
T ss_pred CCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc------eeeeeeccccchhhheehhccCcccccCchhhc
Confidence 34578999999999999999999999999998887777765 799999999999999842 2456778888888
Q ss_pred eeccCCCccccCCC-----cc--EEEeCCCccccHHHHHhHhhccCceeEEEEeECCCCCceeEEEEEecCHHHHHHHHH
Q 006641 102 MYSHRDPSIRKSGY-----GN--VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIK 174 (637)
Q Consensus 102 ~~s~~~~~~~~~~~-----~~--i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~ 174 (637)
.+|..+...|.... .. +.|-|--..||.+-|+.+....|.|+.+.|++. +| -.|.|+|++.+.|.+|..
T Consensus 102 NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ng---VQAmVEFdsv~~AqrAk~ 177 (494)
T KOG1456|consen 102 NYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NG---VQAMVEFDSVEVAQRAKA 177 (494)
T ss_pred ccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cc---eeeEEeechhHHHHHHHh
Confidence 88865544433221 11 446677789999999999999999999988864 33 479999999999999999
Q ss_pred HhcCCee--CCeeeEEeeeehhhhhhhc----------------------------------------------------
Q 006641 175 MLNGMLI--NDKQVYVGLFVRRQERAQQ---------------------------------------------------- 200 (637)
Q Consensus 175 ~lng~~i--~~~~l~V~~~~~~~~~~~~---------------------------------------------------- 200 (637)
.|||..| +..++.|+++++..-+...
T Consensus 178 alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~ 257 (494)
T KOG1456|consen 178 ALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDR 257 (494)
T ss_pred hcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCccccc
Confidence 9999765 4556667665432111000
Q ss_pred ------------------------cCCCccceEEecCCCc-cCCHHHHHHhhcccCCeeEEEEeeCCCCCcceeeEeecC
Q 006641 201 ------------------------NVSPKFTNVYVNNLAE-TVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQ 255 (637)
Q Consensus 201 ------------------------~~~~~~~~lfV~nLp~-~~tee~L~~~F~~~G~i~~v~v~~d~~g~srg~~FV~F~ 255 (637)
........+.|.+|.. .++-+.|..+|..||.|..+.+|+.+.| .+.|+..
T Consensus 258 ~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~g----tamVemg 333 (494)
T KOG1456|consen 258 HGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPG----TAMVEMG 333 (494)
T ss_pred CCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccc----eeEEEcC
Confidence 0011224578888876 5778899999999999999999998654 7999999
Q ss_pred CHHHHHHHHHHHcCCCCCCcEEEEeccchhhhHHH---------HHHHHHHHhhhhh----------hhhcccccccccC
Q 006641 256 SPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREA---------DLRAKFEQERISR----------YEKLKGANLYLKN 316 (637)
Q Consensus 256 ~~e~A~~Av~~lng~~~~g~~l~v~~~~~~~~~~~---------~~~~~~~~~~~~~----------~~~~~~~~l~V~n 316 (637)
+....++|+..||+..+.|.+|.+..++...-... .....+..++..+ .-..+++.|+.-|
T Consensus 334 d~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffN 413 (494)
T KOG1456|consen 334 DAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFN 413 (494)
T ss_pred cHHHHHHHHHHhccCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEec
Confidence 99999999999999999999999888754321110 0011111111111 1135678899999
Q ss_pred CCCCCCHHHHHHHHhhcCC-eEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 006641 317 LDDSINDEKLKELFSEFGT-ITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGR 377 (637)
Q Consensus 317 L~~~~t~e~L~~~F~~~G~-i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g 377 (637)
.|..+|||.|.++|..-+. -++++|+..++-+| --|.++|++.++|..|+..+|...+.+
T Consensus 414 aP~~vtEe~l~~i~nek~v~~~svkvFp~kserS-ssGllEfe~~s~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 414 APLGVTEEQLIGICNEKDVPPTSVKVFPLKSERS-SSGLLEFENKSDAVEALMKLNHYPIEG 474 (494)
T ss_pred CCCccCHHHHHHHhhhcCCCcceEEeeccccccc-ccceeeeehHHHHHHHHHHhccccccC
Confidence 9999999999999987763 56788887654332 358999999999999999999988854
No 42
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.87 E-value=3.9e-22 Score=188.50 Aligned_cols=148 Identities=21% Similarity=0.496 Sum_probs=138.7
Q ss_pred ceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCCCCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccchhh
Q 006641 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRA 286 (637)
Q Consensus 207 ~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~~~~ 286 (637)
.+|||+|||.++++.+|+.+|++||.|..|.|+++ ||||..++...+..|+..|++..++|..|.|.-++.++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 36899999999999999999999999999999987 99999999999999999999999999999998887653
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHH
Q 006641 287 EREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRA 366 (637)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A 366 (637)
. .+++|+|+||.+.++.++||..|++||.|.+|+|. |+|+||.|+-.++|..|
T Consensus 76 k--------------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-------kdy~fvh~d~~eda~~a 128 (346)
T KOG0109|consen 76 K--------------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-------KDYAFVHFDRAEDAVEA 128 (346)
T ss_pred C--------------------CccccccCCCCccccCHHHhhhhcccCCceeeeee-------cceeEEEEeeccchHHH
Confidence 2 45789999999999999999999999999999998 56899999999999999
Q ss_pred HHHhCCceeCCEEEEEEEccch
Q 006641 367 LNEMNGKMIGRKPLYVAVAQRK 388 (637)
Q Consensus 367 ~~~~~g~~~~g~~l~V~~a~~~ 388 (637)
+..|++++|.|++++|.++..+
T Consensus 129 ir~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 129 IRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred Hhcccccccccceeeeeeeccc
Confidence 9999999999999999998764
No 43
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.86 E-value=4.2e-21 Score=191.62 Aligned_cols=175 Identities=25% Similarity=0.448 Sum_probs=151.7
Q ss_pred ccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCC-CCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccc
Q 006641 205 KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQ 283 (637)
Q Consensus 205 ~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~-~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~ 283 (637)
..++|||++|+|++++|.|+++|++||+|.+|.+++|. .+++|||+||+|.+++....++.. ....++++.+.+.++.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 45789999999999999999999999999999999997 489999999999999999888843 4566889999988887
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeec-CCCCcccEEEEEeCCHHH
Q 006641 284 KRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEE 362 (637)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d-~~g~~~g~afV~f~~~~~ 362 (637)
++........ .....+|||++|+.++++++|+++|++||.|..+.++.| .+.+++||+||.|.++++
T Consensus 84 ~r~~~~~~~~------------~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~s 151 (311)
T KOG4205|consen 84 SREDQTKVGR------------HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDS 151 (311)
T ss_pred Cccccccccc------------ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccc
Confidence 7654332111 114568999999999999999999999999999999999 478899999999999999
Q ss_pred HHHHHHHhCCceeCCEEEEEEEccchHHHHH
Q 006641 363 ATRALNEMNGKMIGRKPLYVAVAQRKEERKA 393 (637)
Q Consensus 363 A~~A~~~~~g~~~~g~~l~V~~a~~~~~~~~ 393 (637)
+.+++ ..+-+.|+++.+.|..|.+++....
T Consensus 152 Vdkv~-~~~f~~~~gk~vevkrA~pk~~~~~ 181 (311)
T KOG4205|consen 152 VDKVT-LQKFHDFNGKKVEVKRAIPKEVMQS 181 (311)
T ss_pred cceec-ccceeeecCceeeEeeccchhhccc
Confidence 99988 6777999999999999999987643
No 44
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.85 E-value=2.8e-21 Score=182.72 Aligned_cols=148 Identities=26% Similarity=0.491 Sum_probs=137.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeeccCC
Q 006641 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRD 107 (637)
Q Consensus 28 ~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~~~ 107 (637)
-+|||||||..+++.+|+.+|++||+|+++.|+++ |+||-.++...|+.||..|++..|+|..|.|..|+.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 37999999999999999999999999999999886 9999999999999999999999999999999988765
Q ss_pred CccccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECCCCCceeEEEEEecCHHHHHHHHHHhcCCeeCCeeeE
Q 006641 108 PSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVY 187 (637)
Q Consensus 108 ~~~~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~~~~l~ 187 (637)
....++|+|+||...+++++|+..|+.||.|.+|+|++ +|+||+|+..++|..|++.|++.++.|+.+.
T Consensus 75 ----sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk-------dy~fvh~d~~eda~~air~l~~~~~~gk~m~ 143 (346)
T KOG0109|consen 75 ----SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK-------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMH 143 (346)
T ss_pred ----CCCccccccCCCCccccCHHHhhhhcccCCceeeeeec-------ceeEEEEeeccchHHHHhcccccccccceee
Confidence 33457899999999999999999999999999999984 5999999999999999999999999999999
Q ss_pred Eeeeehh
Q 006641 188 VGLFVRR 194 (637)
Q Consensus 188 V~~~~~~ 194 (637)
|.....+
T Consensus 144 vq~stsr 150 (346)
T KOG0109|consen 144 VQLSTSR 150 (346)
T ss_pred eeeeccc
Confidence 9887654
No 45
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.83 E-value=4.5e-20 Score=182.99 Aligned_cols=247 Identities=19% Similarity=0.240 Sum_probs=205.9
Q ss_pred ccEEEeCCCccccHHHHHhHhhc-cCceeEEEEeECCCCCceeEEEEEecCHHHHHHHHHHhcCCeeCCeeeEEeeeehh
Q 006641 116 GNVFIKNLDTSIDNKALCDTFAA-FGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRR 194 (637)
Q Consensus 116 ~~i~V~nLp~~it~~~L~~~F~~-~G~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~~~~l~V~~~~~~ 194 (637)
+.+||+|||+++.+.+|+++|.. .|.|..|.+..|++|+++|+|.|+|+++|.+++|+++||...++++.|.|+-....
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d~ 124 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHDE 124 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCch
Confidence 45999999999999999999986 68999999999999999999999999999999999999999999999999754332
Q ss_pred hhhhhccCCCccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCCCCCcceeeEeecCCHHHHHHHHHHHcCCCCCC
Q 006641 195 QERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNND 274 (637)
Q Consensus 195 ~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g 274 (637)
...........-.+.|++++....-...|...|.--|.+....+.+|.++.+++..+++|+..-.+..++..++......
T Consensus 125 q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Fl 204 (608)
T KOG4212|consen 125 QRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFL 204 (608)
T ss_pred hhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhhh
Confidence 22211222234467899999998888899999988888888888899999999999999998777777775544433323
Q ss_pred cEEEEeccchhhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEE
Q 006641 275 KVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGF 354 (637)
Q Consensus 275 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~af 354 (637)
+.+.. ...+...++||.||...+..+.|++.|.--|.|+++.+-.|+.|.++||+.
T Consensus 205 r~~h~------------------------f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~v 260 (608)
T KOG4212|consen 205 RSLHI------------------------FSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAV 260 (608)
T ss_pred hhccC------------------------CCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeE
Confidence 32221 112234469999999999999999999999999999999999999999999
Q ss_pred EEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 355 AAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 355 V~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
++|+++-+|..||..+++.-+..++..+.+..
T Consensus 261 i~y~hpveavqaIsml~~~g~~~~~~~~Rl~~ 292 (608)
T KOG4212|consen 261 IEYDHPVEAVQAISMLDRQGLFDRRMTVRLDR 292 (608)
T ss_pred EEecchHHHHHHHHhhccCCCccccceeeccc
Confidence 99999999999999999888888888888854
No 46
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.82 E-value=1.5e-18 Score=176.13 Aligned_cols=263 Identities=19% Similarity=0.277 Sum_probs=194.3
Q ss_pred ccEEEeCCCccccHHHHHhHhhccCceeEEEEeECCCCCceeEEEEEecCHHHHHHHHHHhcCCeeCCeeeEEeeeehhh
Q 006641 116 GNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQ 195 (637)
Q Consensus 116 ~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~~~~l~V~~~~~~~ 195 (637)
.-|.+++|||++|+++|+++|+.++ |.++++.+ .+|+..|-|||+|.++|++++|+++ +.+.+..+-|.|-......
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r-~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~~~e 87 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR-RNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAGGAE 87 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCc-eeEEEEec-cCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccCCcc
Confidence 3488899999999999999999985 67754443 3799999999999999999999985 6677778878775543322
Q ss_pred hhh-----hccCCCccceEEecCCCccCCHHHHHHhhcccCCeeE-EEEeeCCCCCcceeeEeecCCHHHHHHHHHHHcC
Q 006641 196 ERA-----QQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITS-AIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNG 269 (637)
Q Consensus 196 ~~~-----~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~-v~v~~d~~g~srg~~FV~F~~~e~A~~Av~~lng 269 (637)
... ..........|.+.+||+.+|+++|.++|+..-.+.. +.+..+..+++.|-+||+|++.+.|++|+.. +.
T Consensus 88 ~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hr 166 (510)
T KOG4211|consen 88 ADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HR 166 (510)
T ss_pred ccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HH
Confidence 210 0111135567999999999999999999998877776 5577788899999999999999999999965 44
Q ss_pred CCCCCcEEEEeccchhhhHHHHHHHH--------HHH-------------------------------------------
Q 006641 270 TTNNDKVWYVGRAQKRAEREADLRAK--------FEQ------------------------------------------- 298 (637)
Q Consensus 270 ~~~~g~~l~v~~~~~~~~~~~~~~~~--------~~~------------------------------------------- 298 (637)
..+..+-|.|-++.....+....... +..
T Consensus 167 e~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~ 246 (510)
T KOG4211|consen 167 ENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYG 246 (510)
T ss_pred HhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccc
Confidence 55666666666654433332220000 000
Q ss_pred -------hhh---------hhh--------hhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEE
Q 006641 299 -------ERI---------SRY--------EKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGF 354 (637)
Q Consensus 299 -------~~~---------~~~--------~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~af 354 (637)
.+. .+. ....+..++.++||+..++.++..+|+.. ....|.|-..++|+..|-|+
T Consensus 247 ~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl-~p~~v~i~ig~dGr~TGEAd 325 (510)
T KOG4211|consen 247 NFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPL-NPYRVHIEIGPDGRATGEAD 325 (510)
T ss_pred cccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCC-CceeEEEEeCCCCccCCcce
Confidence 000 000 00122558899999999999999999987 44488888888899999999
Q ss_pred EEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 006641 355 AAFSMPEEATRALNEMNGKMIGRKPLYVAV 384 (637)
Q Consensus 355 V~f~~~~~A~~A~~~~~g~~~~g~~l~V~~ 384 (637)
|+|.|.++|..|+ .-++..+..+.|...+
T Consensus 326 veF~t~edav~Am-skd~anm~hrYVElFl 354 (510)
T KOG4211|consen 326 VEFATGEDAVGAM-GKDGANMGHRYVELFL 354 (510)
T ss_pred eecccchhhHhhh-ccCCcccCcceeeecc
Confidence 9999999999999 6666777777666643
No 47
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.82 E-value=8.3e-19 Score=177.95 Aligned_cols=337 Identities=17% Similarity=0.211 Sum_probs=233.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeec
Q 006641 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYS 104 (637)
Q Consensus 25 ~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s 104 (637)
...--|.+++||+++|++||.++|+.+ .|.++.+.|. +++..|-|||+|.+.||+++|+ +.+...+..+-|.|.-+
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Al-kkdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR--NGRPSGEAYVEFTSEEDVEKAL-KKDRESMGHRYIEVFTA 83 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc--CCCcCcceEEEeechHHHHHHH-HhhHHHhCCceEEEEcc
Confidence 345678999999999999999999998 6777666554 4566699999999999999999 55767777788877655
Q ss_pred cCCCcc-------cc--CCCccEEEeCCCccccHHHHHhHhhccCceeE-EEEeECCCCCceeEEEEEecCHHHHHHHHH
Q 006641 105 HRDPSI-------RK--SGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS-CKVAIDSNGQSKGYGFVQFENEEAAQNAIK 174 (637)
Q Consensus 105 ~~~~~~-------~~--~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s-~~v~~~~~g~skg~afV~F~~~e~A~~Ai~ 174 (637)
..++.. .+ .....|.+++||+.|++++|.++|+..-.|.. +.+..+..+.+.|-|||.|++.|.|+.|+.
T Consensus 84 ~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~ 163 (510)
T KOG4211|consen 84 GGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG 163 (510)
T ss_pred CCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH
Confidence 433211 11 24567999999999999999999998765554 456667788899999999999999999998
Q ss_pred HhcCCeeCCeeeEEeeeehhhhhhh-------------------------------------------------------
Q 006641 175 MLNGMLINDKQVYVGLFVRRQERAQ------------------------------------------------------- 199 (637)
Q Consensus 175 ~lng~~i~~~~l~V~~~~~~~~~~~------------------------------------------------------- 199 (637)
+ +...|+.+-|.|-.+.....+..
T Consensus 164 r-hre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~ 242 (510)
T KOG4211|consen 164 R-HRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSL 242 (510)
T ss_pred H-HHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccc
Confidence 6 44455555555532211000000
Q ss_pred ------------------cc--------------CCCccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCCCCCcc
Q 006641 200 ------------------QN--------------VSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSR 247 (637)
Q Consensus 200 ------------------~~--------------~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~~g~sr 247 (637)
.. .......+...+||...++.++.++|+..-.+ .+.+....+|+..
T Consensus 243 ~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~T 321 (510)
T KOG4211|consen 243 QDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRAT 321 (510)
T ss_pred cccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccC
Confidence 00 00011457889999999999999999887665 7788888899999
Q ss_pred eeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccc-hhhhHHH-----------------------HH---------HH
Q 006641 248 CFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQ-KRAEREA-----------------------DL---------RA 294 (637)
Q Consensus 248 g~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~-~~~~~~~-----------------------~~---------~~ 294 (637)
|-++|+|.++++|..|+.+ ++..+..+-+....-. ....... .. ..
T Consensus 322 GEAdveF~t~edav~Amsk-d~anm~hrYVElFln~~~ga~g~~~~s~~~g~~~~~~~~~~Gg~a~g~~~gG~~g~~~~~ 400 (510)
T KOG4211|consen 322 GEADVEFATGEDAVGAMGK-DGANMGHRYVELFLNGAPGASGGGGPSGPGGVGSSGDRNGGGGYASGSYGGGGNGGGGRG 400 (510)
T ss_pred CcceeecccchhhHhhhcc-CCcccCcceeeecccCCcccccCccCCCCCCccccccccCCCCccccccccCCCCCcccc
Confidence 9999999999999999854 2222222111110000 0000000 00 00
Q ss_pred -----------------HHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEe
Q 006641 295 -----------------KFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAF 357 (637)
Q Consensus 295 -----------------~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f 357 (637)
-+.+..........-.+|..+++|...++.++.++|.+++ ...+.+..|+.....|-|=|.|
T Consensus 401 ~~~G~~~~~~~~~~~~Gy~g~~~~~~~~~~e~~~~~~rgap~~a~eadv~d~~~~~~-~a~~~~~yd~~~~~~~~a~~~~ 479 (510)
T KOG4211|consen 401 SPYGRPSDGYSSPGGGGYSGPRGYGRGPQNEHFVIRMRGAPFRASEADVYDFFHPIR-PAQVELLYDHQFQRSGDARVIF 479 (510)
T ss_pred CCCCCCcccccCCCCCCCcCcccCCCCccccccccCcCCCCccccccchhhcccccC-cccccccccccccccCceeEEE
Confidence 0000000111112234588899999999999999999884 4568888887666678899999
Q ss_pred CCHHHHHHHHHH
Q 006641 358 SMPEEATRALNE 369 (637)
Q Consensus 358 ~~~~~A~~A~~~ 369 (637)
.+.++++.|+.+
T Consensus 480 ~~~~~~q~a~~~ 491 (510)
T KOG4211|consen 480 YNRKDYQDALMK 491 (510)
T ss_pred echhhhHHHHHh
Confidence 999999999843
No 48
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=1.5e-18 Score=162.09 Aligned_cols=188 Identities=29% Similarity=0.502 Sum_probs=154.3
Q ss_pred CcceeeeeccCCCccccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECCCCCceeEEEEEecCHHHHHHHHHH
Q 006641 96 GKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKM 175 (637)
Q Consensus 96 g~~iri~~s~~~~~~~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~ 175 (637)
+|+|.|..+ |.+.|....++|||+-|.+.-.|++++.+|..||.|.+|.+.+..+|.+||++||.|.+..+|..||..
T Consensus 2 nrpiqvkpa--dsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~a 79 (371)
T KOG0146|consen 2 NRPIQVKPA--DSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINA 79 (371)
T ss_pred CCCcccccc--ccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHH
Confidence 466666544 333444567789999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCe-eC--CeeeEEeeeehhhhhhhc----------------------------------------------------
Q 006641 176 LNGML-IN--DKQVYVGLFVRRQERAQQ---------------------------------------------------- 200 (637)
Q Consensus 176 lng~~-i~--~~~l~V~~~~~~~~~~~~---------------------------------------------------- 200 (637)
|++.. +- ...+.|++....+++.-.
T Consensus 80 LHgSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~ 159 (371)
T KOG0146|consen 80 LHGSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFA 159 (371)
T ss_pred hcccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhH
Confidence 98853 22 245666665433332100
Q ss_pred --------------------------------------------------------------------------------
Q 006641 201 -------------------------------------------------------------------------------- 200 (637)
Q Consensus 201 -------------------------------------------------------------------------------- 200 (637)
T Consensus 160 ~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~v 239 (371)
T KOG0146|consen 160 AAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTV 239 (371)
T ss_pred HHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccc
Confidence
Q ss_pred ----------------------------------------cCCCccceEEecCCCccCCHHHHHHhhcccCCeeEEEEee
Q 006641 201 ----------------------------------------NVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMK 240 (637)
Q Consensus 201 ----------------------------------------~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~ 240 (637)
.+.+..++|||-.||.+..+.||...|-+||.|.+.++.-
T Consensus 240 a~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFv 319 (371)
T KOG0146|consen 240 ADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFV 319 (371)
T ss_pred cchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeee
Confidence 0112337899999999999999999999999999999988
Q ss_pred CC-CCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccchh
Q 006641 241 DS-DGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKR 285 (637)
Q Consensus 241 d~-~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~~~ 285 (637)
|+ +..||+|+||.|+++.++..||..+||..|+-++|+|....++
T Consensus 320 DRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPk 365 (371)
T KOG0146|consen 320 DRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPK 365 (371)
T ss_pred hhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCcc
Confidence 86 5789999999999999999999999999999999888765554
No 49
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.75 E-value=1.9e-18 Score=177.73 Aligned_cols=179 Identities=24% Similarity=0.385 Sum_probs=151.7
Q ss_pred ccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCC-CCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccc
Q 006641 205 KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQ 283 (637)
Q Consensus 205 ~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~-~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~ 283 (637)
..+++|+--++...+..+|.++|+.+|.|.+|.++.|. .++++|.+||+|.+.++...|+ .|+|..+.|..|.|....
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSE 256 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccH
Confidence 45788988899899999999999999999999999997 4789999999999999999999 899999999999998776
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHH
Q 006641 284 KRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEE 362 (637)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~ 362 (637)
....+.+.....+.. ..-..+...|||+||..++++++|+..|++||.|+.|.++.|. +|+++|||||+|.+.++
T Consensus 257 aeknr~a~~s~a~~~----k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 257 AEKNRAANASPALQG----KGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred HHHHHHHhccccccc----cccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 554442222111110 0011223339999999999999999999999999999999995 99999999999999999
Q ss_pred HHHHHHHhCCceeCCEEEEEEEccch
Q 006641 363 ATRALNEMNGKMIGRKPLYVAVAQRK 388 (637)
Q Consensus 363 A~~A~~~~~g~~~~g~~l~V~~a~~~ 388 (637)
|.+|+..|||.++.|+.|+|..-..+
T Consensus 333 ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 333 ARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred HHHHHHHhccceecCceEEEEEeeee
Confidence 99999999999999999999877654
No 50
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.74 E-value=1.7e-17 Score=149.87 Aligned_cols=82 Identities=33% Similarity=0.584 Sum_probs=77.4
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
..+++|||+||++++|+++|+++|++||.|++|+|+.|. +++++|||||+|.+.++|++|++.||++.|+|++|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 356789999999999999999999999999999999984 7899999999999999999999999999999999999999
Q ss_pred cch
Q 006641 386 QRK 388 (637)
Q Consensus 386 ~~~ 388 (637)
..+
T Consensus 112 ~~~ 114 (144)
T PLN03134 112 NDR 114 (144)
T ss_pred CcC
Confidence 764
No 51
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.74 E-value=7.4e-18 Score=168.41 Aligned_cols=170 Identities=22% Similarity=0.397 Sum_probs=150.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeecc
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSH 105 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~ 105 (637)
++++|+|++|.++++|+.|+++|++||+|..+.|.+|..+.+++||+||+|.+.+...++|. .....|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 68899999999999999999999999999999999999999999999999999999999994 34567889999887665
Q ss_pred CCCccccCC----CccEEEeCCCccccHHHHHhHhhccCceeEEEEeECC-CCCceeEEEEEecCHHHHHHHHHHhcCCe
Q 006641 106 RDPSIRKSG----YGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKMLNGML 180 (637)
Q Consensus 106 ~~~~~~~~~----~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~ 180 (637)
......+.. ..+|||+.||.+++++++++.|..||.|..+.++.|. +..++||+||.|.+++++++++.. .-..
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-KFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc-ceee
Confidence 544433333 3489999999999999999999999999999999887 788999999999999999988863 6678
Q ss_pred eCCeeeEEeeeehhhhh
Q 006641 181 INDKQVYVGLFVRRQER 197 (637)
Q Consensus 181 i~~~~l~V~~~~~~~~~ 197 (637)
++++.+.|..+.++...
T Consensus 163 ~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEVM 179 (311)
T ss_pred ecCceeeEeeccchhhc
Confidence 99999999999887665
No 52
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=3.7e-17 Score=144.84 Aligned_cols=148 Identities=24% Similarity=0.382 Sum_probs=125.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeee
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIM 102 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~ 102 (637)
+++++++|||+|||.++.|.+|.++|.+||.|..|.+... ...-+||||+|+++.||+.||..-++..+.|..|||+
T Consensus 2 ~gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVE 78 (241)
T KOG0105|consen 2 SGRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVE 78 (241)
T ss_pred CCcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEE
Confidence 4678899999999999999999999999999999886433 2334799999999999999999999999999999999
Q ss_pred eccCCC-------------------------ccccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECCCCCcee
Q 006641 103 YSHRDP-------------------------SIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKG 157 (637)
Q Consensus 103 ~s~~~~-------------------------~~~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~~g~skg 157 (637)
|....- ..+++ ...|.|.+||.+-+.++|+++....|.|.-..+.+| |
T Consensus 79 fprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrS-e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g 151 (241)
T KOG0105|consen 79 FPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRS-EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------G 151 (241)
T ss_pred eccCCCcccccccccCCCCCCCCCCCcccCCccccc-ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------c
Confidence 976431 11111 235999999999999999999999999987777644 4
Q ss_pred EEEEEecCHHHHHHHHHHhcCCe
Q 006641 158 YGFVQFENEEAAQNAIKMLNGML 180 (637)
Q Consensus 158 ~afV~F~~~e~A~~Ai~~lng~~ 180 (637)
++.|+|...|+-+-|+.+|....
T Consensus 152 ~GvV~~~r~eDMkYAvr~ld~~~ 174 (241)
T KOG0105|consen 152 VGVVEYLRKEDMKYAVRKLDDQK 174 (241)
T ss_pred ceeeeeeehhhHHHHHHhhcccc
Confidence 89999999999999999887544
No 53
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=1.6e-16 Score=166.14 Aligned_cols=256 Identities=22% Similarity=0.374 Sum_probs=197.7
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcc-----------C-CeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHH
Q 006641 21 VPSGYGNVSLYVGDLEQNVNESQLYDLFSQV-----------A-QVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88 (637)
Q Consensus 21 ~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~-----------G-~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ 88 (637)
....+.++.+||+++|+.++|+.+..+|+.- | .|.++.++..+. +||++|.+.++|..|+ .
T Consensus 169 ~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~n------fa~ie~~s~~~at~~~-~ 241 (500)
T KOG0120|consen 169 SQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKN------FAFIEFRSISEATEAM-A 241 (500)
T ss_pred cchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccccc------ceeEEecCCCchhhhh-c
Confidence 3455678999999999999999999999654 3 588888888775 9999999999999999 7
Q ss_pred cCCCccCCcceeeeeccCCC-----------------c----cccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEE
Q 006641 89 LNFMPINGKPIRIMYSHRDP-----------------S----IRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKV 147 (637)
Q Consensus 89 ln~~~i~g~~iri~~s~~~~-----------------~----~~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v 147 (637)
++...+.|.++++.-....- . ..-.....++|.+||..+++.++.++...||.+....+
T Consensus 242 ~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~l 321 (500)
T KOG0120|consen 242 LDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRL 321 (500)
T ss_pred ccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhhee
Confidence 88888889888775322110 0 01111346999999999999999999999999999999
Q ss_pred eECC-CCCceeEEEEEecCHHHHHHHHHHhcCCeeCCeeeEEeeeehhhhhhhccC------------------CCccce
Q 006641 148 AIDS-NGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNV------------------SPKFTN 208 (637)
Q Consensus 148 ~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~i~~~~l~V~~~~~~~~~~~~~~------------------~~~~~~ 208 (637)
+.+. +|.++||||.+|.+......|+..|||+.+.++.+.|..+........... ......
T Consensus 322 v~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~V 401 (500)
T KOG0120|consen 322 VKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEV 401 (500)
T ss_pred ecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchh
Confidence 9987 789999999999999999999999999999999999987644332211111 111122
Q ss_pred EEecCC--Ccc-CCH-------HHHHHhhcccCCeeEEEEeeC-CC---CCcceeeEeecCCHHHHHHHHHHHcCCCCCC
Q 006641 209 VYVNNL--AET-VTD-------EDLKKIFGHFGTITSAIVMKD-SD---GKSRCFGFVNFQSPDAAAAAVEKLNGTTNND 274 (637)
Q Consensus 209 lfV~nL--p~~-~te-------e~L~~~F~~~G~i~~v~v~~d-~~---g~srg~~FV~F~~~e~A~~Av~~lng~~~~g 274 (637)
|.+.|+ +.+ .++ |+++.-+.+||.|.+|.+.++ .. ....|..||+|.+.+++++|.++|+|..+.+
T Consensus 402 l~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~n 481 (500)
T KOG0120|consen 402 LCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFAN 481 (500)
T ss_pred hhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCC
Confidence 233332 011 112 345556789999999998877 32 3456789999999999999999999999999
Q ss_pred cEEEEeccc
Q 006641 275 KVWYVGRAQ 283 (637)
Q Consensus 275 ~~l~v~~~~ 283 (637)
+.+...+-.
T Consensus 482 RtVvtsYyd 490 (500)
T KOG0120|consen 482 RTVVASYYD 490 (500)
T ss_pred cEEEEEecC
Confidence 998876654
No 54
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.70 E-value=2.4e-15 Score=148.87 Aligned_cols=246 Identities=21% Similarity=0.277 Sum_probs=191.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCC--cceeeeecc
Q 006641 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPING--KPIRIMYSH 105 (637)
Q Consensus 28 ~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g--~~iri~~s~ 105 (637)
-.+.|+|+=..+|-+.|+.+|++||.|..|.-.....+ -.|.|.|.+.+.|..|...|++..|.+ ..+||.||+
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~----FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNG----FQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccc----hhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 46778999999999999999999999999887766543 259999999999999999999988865 567888875
Q ss_pred CCC----------------ccccC---------------------------------------------CCccEEEeCCC
Q 006641 106 RDP----------------SIRKS---------------------------------------------GYGNVFIKNLD 124 (637)
Q Consensus 106 ~~~----------------~~~~~---------------------------------------------~~~~i~V~nLp 124 (637)
... .+... ....|.|.||.
T Consensus 227 lt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln 306 (492)
T KOG1190|consen 227 LTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLN 306 (492)
T ss_pred cccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCc
Confidence 310 00000 01236777776
Q ss_pred -ccccHHHHHhHhhccCceeEEEEeECCCCCceeEEEEEecCHHHHHHHHHHhcCCeeCCeeeEEeeeehhhhhh-----
Q 006641 125 -TSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERA----- 198 (637)
Q Consensus 125 -~~it~~~L~~~F~~~G~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~~~~l~V~~~~~~~~~~----- 198 (637)
..+|.+.|+.+|..||+|..+++..++ +..|+|+|.+...|..|++.|+|..+.|+.|+|.+.+...-..
T Consensus 307 ~~~VT~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq 382 (492)
T KOG1190|consen 307 EEAVTPDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQ 382 (492)
T ss_pred hhccchhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCC
Confidence 568999999999999999999999764 3579999999999999999999999999999998864321110
Q ss_pred -----------------hccCC-------CccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCCCCCcceeeEeec
Q 006641 199 -----------------QQNVS-------PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNF 254 (637)
Q Consensus 199 -----------------~~~~~-------~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~~g~srg~~FV~F 254 (637)
..... +...++...|+|.++++|++++.|..-|...+..... ++.+.++++.+
T Consensus 383 ~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff---~kd~kmal~q~ 459 (492)
T KOG1190|consen 383 EDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF---QKDRKMALPQL 459 (492)
T ss_pred ccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec---CCCcceeeccc
Confidence 00111 2334678899999999999999999888776554333 23456999999
Q ss_pred CCHHHHHHHHHHHcCCCCCCc-EEEEeccch
Q 006641 255 QSPDAAAAAVEKLNGTTNNDK-VWYVGRAQK 284 (637)
Q Consensus 255 ~~~e~A~~Av~~lng~~~~g~-~l~v~~~~~ 284 (637)
++.|.|..|+-.++...++.. .++|.+++.
T Consensus 460 ~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 460 ESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred CChhHhhhhccccccccCCCCceEEEEeecc
Confidence 999999999988877776654 788877653
No 55
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.69 E-value=4.4e-16 Score=144.23 Aligned_cols=157 Identities=25% Similarity=0.474 Sum_probs=133.9
Q ss_pred CcEEEEcCCCCCCcHHHHHH----HHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeee
Q 006641 27 NVSLYVGDLEQNVNESQLYD----LFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIM 102 (637)
Q Consensus 27 ~~~L~V~nLp~~~te~~L~~----~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~ 102 (637)
+.||||.||+..+.-++|+. +|++||.|+.|.+++.. +.+|.|||.|.+.+.|..|++.|++..+.|+++||.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~---KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTP---KMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCC---CccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 44999999999999999877 99999999999998754 456999999999999999999999999999999999
Q ss_pred eccCCCccccC------------------------------------------------CCccEEEeCCCccccHHHHHh
Q 006641 103 YSHRDPSIRKS------------------------------------------------GYGNVFIKNLDTSIDNKALCD 134 (637)
Q Consensus 103 ~s~~~~~~~~~------------------------------------------------~~~~i~V~nLp~~it~~~L~~ 134 (637)
|++.+...... ....+|+.|||.+.+.+.|.+
T Consensus 86 yA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~ 165 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSD 165 (221)
T ss_pred cccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHH
Confidence 98765432111 123489999999999999999
Q ss_pred HhhccCceeEEEEeECCCCCceeEEEEEecCHHHHHHHHHHhcCCeeC-CeeeEEee
Q 006641 135 TFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLIN-DKQVYVGL 190 (637)
Q Consensus 135 ~F~~~G~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~-~~~l~V~~ 190 (637)
+|..|.....++++.. .++.|||+|.+...|..|...+++..|- ...+.+.+
T Consensus 166 lf~qf~g~keir~i~~----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~ 218 (221)
T KOG4206|consen 166 LFEQFPGFKEIRLIPP----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITF 218 (221)
T ss_pred HHhhCcccceeEeccC----CCceeEEecchhhhhHHHhhhhccceeccCceEEecc
Confidence 9999998888888754 4569999999999999999999998876 55565544
No 56
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.68 E-value=3.1e-16 Score=141.67 Aligned_cols=86 Identities=26% Similarity=0.468 Sum_probs=80.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeee
Q 006641 24 GYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMY 103 (637)
Q Consensus 24 ~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~ 103 (637)
...+++|||+|||+++||++|+++|+.||.|.+|+|+.|..|++++|||||+|.+.++|++||+.||+..|.|+.|+|.|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCc
Q 006641 104 SHRDPS 109 (637)
Q Consensus 104 s~~~~~ 109 (637)
+...+.
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 876544
No 57
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.63 E-value=3.2e-14 Score=139.72 Aligned_cols=293 Identities=17% Similarity=0.205 Sum_probs=197.4
Q ss_pred cceeeeeccCCCccccCCCcc--EEEeCCCccccHHHHHhHhhccCceeEEE-EeECCCCCceeEEEEEecCHHHHHHHH
Q 006641 97 KPIRIMYSHRDPSIRKSGYGN--VFIKNLDTSIDNKALCDTFAAFGTVLSCK-VAIDSNGQSKGYGFVQFENEEAAQNAI 173 (637)
Q Consensus 97 ~~iri~~s~~~~~~~~~~~~~--i~V~nLp~~it~~~L~~~F~~~G~I~s~~-v~~~~~g~skg~afV~F~~~e~A~~Ai 173 (637)
..+.++|-....+.......+ +..++||+..++.+|..+|....-..-.. +..+..|...|.+.|.|.+.|.-+.|+
T Consensus 40 e~vn~~y~~gt~s~~~~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlal 119 (508)
T KOG1365|consen 40 EFVNIKYEAGTCSKNHSADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLAL 119 (508)
T ss_pred hhheeeecccchhhccccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhh
Confidence 445566654443333333333 55679999999999999998653222112 222336778889999999999999999
Q ss_pred HHhcCCeeCCeeeEEeeeehhhhhhh---------ccC-CCccceEEecCCCccCCHHHHHHhhccc----CCeeEEEEe
Q 006641 174 KMLNGMLINDKQVYVGLFVRRQERAQ---------QNV-SPKFTNVYVNNLAETVTDEDLKKIFGHF----GTITSAIVM 239 (637)
Q Consensus 174 ~~lng~~i~~~~l~V~~~~~~~~~~~---------~~~-~~~~~~lfV~nLp~~~tee~L~~~F~~~----G~i~~v~v~ 239 (637)
+. +.+.+..+.+.|-......-... .-. ..+.--|.+++||++.++.++.++|.+. |..+.+.+.
T Consensus 120 kR-hkhh~g~ryievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV 198 (508)
T KOG1365|consen 120 KR-HKHHMGTRYIEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFV 198 (508)
T ss_pred Hh-hhhhccCCceeeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEE
Confidence 86 55566667666644332211100 001 1234567889999999999999999632 345677788
Q ss_pred eCCCCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccchhhhHHHHHHHHHHHhhhh--------------hhh
Q 006641 240 KDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERIS--------------RYE 305 (637)
Q Consensus 240 ~d~~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~--------------~~~ 305 (637)
+..+|+..|-+||.|..+++|..|+.+- ...++.+-|.+-++.. .+-...+.+.....-.. ...
T Consensus 199 ~rpdgrpTGdAFvlfa~ee~aq~aL~kh-rq~iGqRYIElFRSTa-aEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~ 276 (508)
T KOG1365|consen 199 TRPDGRPTGDAFVLFACEEDAQFALRKH-RQNIGQRYIELFRSTA-AEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPP 276 (508)
T ss_pred ECCCCCcccceEEEecCHHHHHHHHHHH-HHHHhHHHHHHHHHhH-HHHHHHHHhhccccccCCCCCCCCCCCccccCCC
Confidence 8889999999999999999999999763 2223333333222221 12222222111000000 000
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCC-eEE--EEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGT-ITS--CKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYV 382 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~-i~~--~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V 382 (637)
....-+|.+++||++.+.|+|-++|..|-. |.. |.+..+..|+..|-|||+|.+.|+|..|....|++...+|.|+|
T Consensus 277 ~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEv 356 (508)
T KOG1365|consen 277 TRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEV 356 (508)
T ss_pred CCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEE
Confidence 112346999999999999999999999863 444 67777778999999999999999999999999988888999999
Q ss_pred EEccchHHHH
Q 006641 383 AVAQRKEERK 392 (637)
Q Consensus 383 ~~a~~~~~~~ 392 (637)
--+...+-..
T Consensus 357 fp~S~eeln~ 366 (508)
T KOG1365|consen 357 FPCSVEELNE 366 (508)
T ss_pred eeccHHHHHH
Confidence 8777666543
No 58
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=1.6e-15 Score=158.73 Aligned_cols=267 Identities=21% Similarity=0.366 Sum_probs=196.7
Q ss_pred ccEEEeCCCccccHHHHHhHhhcc-----------C-ceeEEEEeECCCCCceeEEEEEecCHHHHHHHHHHhcCCeeCC
Q 006641 116 GNVFIKNLDTSIDNKALCDTFAAF-----------G-TVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLIND 183 (637)
Q Consensus 116 ~~i~V~nLp~~it~~~L~~~F~~~-----------G-~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~~ 183 (637)
..++|.+++..++++....+|..- | .+.+|.+. ..+.++|++|.+.++|..++. +++..+.|
T Consensus 176 ~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n-----~~~nfa~ie~~s~~~at~~~~-~~~~~f~g 249 (500)
T KOG0120|consen 176 RRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN-----LEKNFAFIEFRSISEATEAMA-LDGIIFEG 249 (500)
T ss_pred hhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec-----ccccceeEEecCCCchhhhhc-ccchhhCC
Confidence 469999999999999999988853 3 36666664 356799999999999999986 47767777
Q ss_pred eeeEEeeeehhhhh-----------------hhccCCCccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCCC-CC
Q 006641 184 KQVYVGLFVRRQER-----------------AQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSD-GK 245 (637)
Q Consensus 184 ~~l~V~~~~~~~~~-----------------~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~~-g~ 245 (637)
..+.+......... ...........+||++||...+++++.++.+.||.+....+.++.. |.
T Consensus 250 ~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~ 329 (500)
T KOG0120|consen 250 RPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGN 329 (500)
T ss_pred CCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccccc
Confidence 76665432211110 0011123346799999999999999999999999999999988865 89
Q ss_pred cceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccchhhhHHHHHHH------HHHHhhhhhhhhcccccccccCCC-
Q 006641 246 SRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRA------KFEQERISRYEKLKGANLYLKNLD- 318 (637)
Q Consensus 246 srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~V~nL~- 318 (637)
++||+|.+|.++.....|+..+||..+.++.|.+..+............ ..-.....+....+...|...|+=
T Consensus 330 skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt 409 (500)
T KOG0120|consen 330 SKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVT 409 (500)
T ss_pred ccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCC
Confidence 9999999999999999999999999999999999887543322111111 000011112223344455555541
Q ss_pred -CCC-CH-------HHHHHHHhhcCCeEEEEEeec-CC---CCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 319 -DSI-ND-------EKLKELFSEFGTITSCKVMVD-QH---GFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 319 -~~~-t~-------e~L~~~F~~~G~i~~~~i~~d-~~---g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
++. ++ |+++..+++||.|.+|+|.++ .+ ...-|..||+|.+.+++++|.++|+|..|++|.+..+|-
T Consensus 410 ~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 410 PDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred HHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 111 11 567777889999999999988 32 334677899999999999999999999999999999887
Q ss_pred cch
Q 006641 386 QRK 388 (637)
Q Consensus 386 ~~~ 388 (637)
...
T Consensus 490 deD 492 (500)
T KOG0120|consen 490 DED 492 (500)
T ss_pred CHH
Confidence 643
No 59
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.58 E-value=1.4e-14 Score=134.41 Aligned_cols=174 Identities=25% Similarity=0.406 Sum_probs=141.8
Q ss_pred ceEEecCCCccCCHHHHHH----hhcccCCeeEEEEeeCCCCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEecc
Q 006641 207 TNVYVNNLAETVTDEDLKK----IFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRA 282 (637)
Q Consensus 207 ~~lfV~nLp~~~tee~L~~----~F~~~G~i~~v~v~~d~~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~ 282 (637)
.+|||.||...+..++|+. +|++||.|.+|...+ ..+.||.|||.|.+.+.|..|+..|+|..+-|+.+.+.++
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 4999999999999999888 999999998887655 4578999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHH-------HHHHhhhh-------------------------hhhhcccccccccCCCCCCCHHHHHHHH
Q 006641 283 QKRAEREADLRA-------KFEQERIS-------------------------RYEKLKGANLYLKNLDDSINDEKLKELF 330 (637)
Q Consensus 283 ~~~~~~~~~~~~-------~~~~~~~~-------------------------~~~~~~~~~l~V~nL~~~~t~e~L~~~F 330 (637)
..++..-...+. +....+.. .....+...||+.|||.+++.+.|..+|
T Consensus 88 ~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf 167 (221)
T KOG4206|consen 88 KSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLF 167 (221)
T ss_pred cCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHH
Confidence 776543332110 00000000 0113455679999999999999999999
Q ss_pred hhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC-CEEEEEEEcc
Q 006641 331 SEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIG-RKPLYVAVAQ 386 (637)
Q Consensus 331 ~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~-g~~l~V~~a~ 386 (637)
++|..-..++++... ++.|||+|.+...|..|.+.+.+..+- ...+.|.+++
T Consensus 168 ~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 168 EQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred hhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999998754 688999999999999999999998776 7888888775
No 60
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.58 E-value=5.1e-13 Score=130.93 Aligned_cols=242 Identities=22% Similarity=0.265 Sum_probs=185.1
Q ss_pred CCCCCcEEEEcCCC--CCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCC--cc
Q 006641 23 SGYGNVSLYVGDLE--QNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPING--KP 98 (637)
Q Consensus 23 ~~~~~~~L~V~nLp--~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g--~~ 98 (637)
+..++..|.+.=|. +.+|.+.|+.++...|+|+.|.|.+... -.|.|+|++.+.|.+|.+.||+..|.- .+
T Consensus 116 s~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkng-----VQAmVEFdsv~~AqrAk~alNGADIYsGCCT 190 (494)
T KOG1456|consen 116 SATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNG-----VQAMVEFDSVEVAQRAKAALNGADIYSGCCT 190 (494)
T ss_pred CCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccc-----eeeEEeechhHHHHHHHhhccccccccccee
Confidence 34456777766654 5699999999999999999999998743 469999999999999999999998853 66
Q ss_pred eeeeeccCCC----------------cc--------------------------cc------------------------
Q 006641 99 IRIMYSHRDP----------------SI--------------------------RK------------------------ 112 (637)
Q Consensus 99 iri~~s~~~~----------------~~--------------------------~~------------------------ 112 (637)
++|.|++++. .. +.
T Consensus 191 LKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~ 270 (494)
T KOG1456|consen 191 LKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRD 270 (494)
T ss_pred EEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCcc
Confidence 7888876421 00 00
Q ss_pred ---CC-----------CccEEEeCCCc-cccHHHHHhHhhccCceeEEEEeECCCCCceeEEEEEecCHHHHHHHHHHhc
Q 006641 113 ---SG-----------YGNVFIKNLDT-SIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177 (637)
Q Consensus 113 ---~~-----------~~~i~V~nLp~-~it~~~L~~~F~~~G~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~ln 177 (637)
.+ ...+.|.+|.. .++-+.|.++|..||+|+.+++++.+ .|.|.|+..+..+.++|+..||
T Consensus 271 ~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----~gtamVemgd~~aver~v~hLn 346 (494)
T KOG1456|consen 271 GYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----PGTAMVEMGDAYAVERAVTHLN 346 (494)
T ss_pred ccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----cceeEEEcCcHHHHHHHHHHhc
Confidence 00 01277888885 46888999999999999999999765 4579999999999999999999
Q ss_pred CCeeCCeeeEEeeeehhhh------------------------h-------hhccCCCccceEEecCCCccCCHHHHHHh
Q 006641 178 GMLINDKQVYVGLFVRRQE------------------------R-------AQQNVSPKFTNVYVNNLAETVTDEDLKKI 226 (637)
Q Consensus 178 g~~i~~~~l~V~~~~~~~~------------------------~-------~~~~~~~~~~~lfV~nLp~~~tee~L~~~ 226 (637)
+..+.|.+|.|...+...- + .+.......+.|..-|.|..+||+.|.++
T Consensus 347 n~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i 426 (494)
T KOG1456|consen 347 NIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGI 426 (494)
T ss_pred cCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHH
Confidence 9999999998866532110 0 00111234566788899999999999999
Q ss_pred hcccCC-eeEEEEeeCCCCCcceeeEeecCCHHHHHHHHHHHcCCCCCC
Q 006641 227 FGHFGT-ITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNND 274 (637)
Q Consensus 227 F~~~G~-i~~v~v~~d~~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g 274 (637)
|...+. -+++.+...++.++ ..+.++|++.++|..|+-.+|...+.+
T Consensus 427 ~nek~v~~~svkvFp~kserS-ssGllEfe~~s~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 427 CNEKDVPPTSVKVFPLKSERS-SSGLLEFENKSDAVEALMKLNHYPIEG 474 (494)
T ss_pred hhhcCCCcceEEeeccccccc-ccceeeeehHHHHHHHHHHhccccccC
Confidence 976554 35566666554443 358999999999999999999887764
No 61
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.58 E-value=9.4e-15 Score=115.49 Aligned_cols=70 Identities=43% Similarity=0.727 Sum_probs=67.7
Q ss_pred ccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 006641 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLY 381 (637)
Q Consensus 312 l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~ 381 (637)
|||+|||.++|+++|+++|++||.|..++++.+.++.++++|||+|.+.++|.+|++.++|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999988889999999999999999999999999999999885
No 62
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=4.9e-15 Score=137.39 Aligned_cols=79 Identities=30% Similarity=0.467 Sum_probs=73.0
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
.-++|||++|+|++..|.|+++|++||+|++++|+.|+ +|+|||||||+|.|.++|.+|++..| -.|+||+..+.+|.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhh
Confidence 34689999999999999999999999999999999995 89999999999999999999997776 78999999998886
Q ss_pred c
Q 006641 387 R 387 (637)
Q Consensus 387 ~ 387 (637)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 4
No 63
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.55 E-value=1.5e-13 Score=134.00 Aligned_cols=182 Identities=21% Similarity=0.266 Sum_probs=141.0
Q ss_pred CccceEEecCCCccCCHHHHHHhhcccCCee--------EEEEeeCCCCCcceeeEeecCCHHHHHHHHHHHcCCCCCCc
Q 006641 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTIT--------SAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDK 275 (637)
Q Consensus 204 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~--------~v~v~~d~~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~ 275 (637)
...+.|||.|||.++|.+++.++|++||.|. .|.+.++..|+.+|-+.++|-..+++..|++-|++..+.|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 3457799999999999999999999999875 47788888999999999999999999999999999999999
Q ss_pred EEEEeccchhhh--H---------------HHHHHHHHHHhhhh---hhhhcccccccccCCC----CCCC-------HH
Q 006641 276 VWYVGRAQKRAE--R---------------EADLRAKFEQERIS---RYEKLKGANLYLKNLD----DSIN-------DE 324 (637)
Q Consensus 276 ~l~v~~~~~~~~--~---------------~~~~~~~~~~~~~~---~~~~~~~~~l~V~nL~----~~~t-------~e 324 (637)
.+.|.+++-... . ....+.+....+.+ .......++|.|+|+= ...+ .+
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 999999842110 0 00011110000111 1122345678888871 2223 36
Q ss_pred HHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccch
Q 006641 325 KLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRK 388 (637)
Q Consensus 325 ~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~~ 388 (637)
+|++-+++||.|.+|.|... .+.|.+-|.|.+.++|..+|+.|+|+.|+||.|..++...+
T Consensus 292 dl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 78888999999999998754 34789999999999999999999999999999998887643
No 64
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.54 E-value=2.3e-14 Score=113.24 Aligned_cols=70 Identities=46% Similarity=0.729 Sum_probs=67.2
Q ss_pred EEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCccee
Q 006641 30 LYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIR 100 (637)
Q Consensus 30 L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ir 100 (637)
|||+|||+++|+++|+++|+.||.|..+++.++ .++++.|||||.|.+.++|++|++.|++..+.|+.||
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999999 6788889999999999999999999999999999986
No 65
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=8.1e-14 Score=123.80 Aligned_cols=170 Identities=19% Similarity=0.307 Sum_probs=131.4
Q ss_pred ccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCCCCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccch
Q 006641 205 KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQK 284 (637)
Q Consensus 205 ~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~~ 284 (637)
..+.|||+|||.++.+.+|.++|-+||.|..|.+..... .-.||||+|+++.+|+.|+..-++..+++..|.|.++..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g--~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG--PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC--CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 457899999999999999999999999999998855432 346999999999999999999999999999999998754
Q ss_pred hhhHHHHHHHHHH---------HhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEE
Q 006641 285 RAEREADLRAKFE---------QERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFA 355 (637)
Q Consensus 285 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV 355 (637)
-.... .....+. -...-...+.....|.|.+||.+-++++|+++..+-|.|-...+.+| |.+.|
T Consensus 83 gr~s~-~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~GvV 155 (241)
T KOG0105|consen 83 GRSSS-DRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGVV 155 (241)
T ss_pred CCccc-ccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cceee
Confidence 32100 0000000 00000011122345999999999999999999999999999999887 57999
Q ss_pred EeCCHHHHHHHHHHhCCceeC--CEEEEEE
Q 006641 356 AFSMPEEATRALNEMNGKMIG--RKPLYVA 383 (637)
Q Consensus 356 ~f~~~~~A~~A~~~~~g~~~~--g~~l~V~ 383 (637)
+|...|+.+-|+..|....+. |...++.
T Consensus 156 ~~~r~eDMkYAvr~ld~~~~~seGe~~yir 185 (241)
T KOG0105|consen 156 EYLRKEDMKYAVRKLDDQKFRSEGETAYIR 185 (241)
T ss_pred eeeehhhHHHHHHhhccccccCcCcEeeEE
Confidence 999999999999999886663 4444443
No 66
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=2.1e-14 Score=138.79 Aligned_cols=80 Identities=26% Similarity=0.527 Sum_probs=75.3
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccc
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQR 387 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~ 387 (637)
....|+|.|||+..-|-||+.+|.+||.|.+|+|+.++.| |||||||+|++.++|++|-++|||..|.||+|+|..|..
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 3456999999999999999999999999999999999765 799999999999999999999999999999999999986
Q ss_pred h
Q 006641 388 K 388 (637)
Q Consensus 388 ~ 388 (637)
+
T Consensus 174 r 174 (376)
T KOG0125|consen 174 R 174 (376)
T ss_pred h
Confidence 5
No 67
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=6.4e-14 Score=130.34 Aligned_cols=82 Identities=26% Similarity=0.425 Sum_probs=78.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeecc
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSH 105 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~ 105 (637)
.+++|.|.||+.+++|.+|.++|..||+|..|.+.+|+.|+.++|||||.|.+.+||.+||+.||+.-+..--|+|.||+
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CC
Q 006641 106 RD 107 (637)
Q Consensus 106 ~~ 107 (637)
+.
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 64
No 68
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.48 E-value=1.6e-13 Score=108.47 Aligned_cols=70 Identities=37% Similarity=0.670 Sum_probs=65.3
Q ss_pred ccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 006641 312 LYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLY 381 (637)
Q Consensus 312 l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~ 381 (637)
|||+|||+++++++|+++|+.||.|..+.+..++++.++++|||+|.+.++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999997789999999999999999999999999999999885
No 69
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=7.6e-14 Score=116.65 Aligned_cols=83 Identities=27% Similarity=0.496 Sum_probs=78.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeee
Q 006641 24 GYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMY 103 (637)
Q Consensus 24 ~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~ 103 (637)
.+.|++|||+||...++|++|+++|+.+|+|..|.+=.|+.+....|||||+|.+.+||+.|+..+|++.+..++|+|.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 006641 104 SHR 106 (637)
Q Consensus 104 s~~ 106 (637)
..-
T Consensus 113 D~G 115 (153)
T KOG0121|consen 113 DAG 115 (153)
T ss_pred ccc
Confidence 653
No 70
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.48 E-value=9.2e-13 Score=120.70 Aligned_cols=230 Identities=19% Similarity=0.282 Sum_probs=137.0
Q ss_pred cCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECCC--CCceeEEEEEecCHHHHHHHHHHhcCCeeC---Ceee
Q 006641 112 KSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSN--GQSKGYGFVQFENEEAAQNAIKMLNGMLIN---DKQV 186 (637)
Q Consensus 112 ~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~~--g~skg~afV~F~~~e~A~~Ai~~lng~~i~---~~~l 186 (637)
....++|||.+||.++.-.+|+.+|..|-..+.+.+..... ...+-+|||.|.+..+|..|++.|||+.++ +..+
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 34478999999999999999999999999888888876542 235679999999999999999999999885 4677
Q ss_pred EEeeeehhhhhhhccCC--C-ccceEEecCCCccCC----HHHHHHhhcccCCeeEEEEeeCCCC-CcceeeEeecCCHH
Q 006641 187 YVGLFVRRQERAQQNVS--P-KFTNVYVNNLAETVT----DEDLKKIFGHFGTITSAIVMKDSDG-KSRCFGFVNFQSPD 258 (637)
Q Consensus 187 ~V~~~~~~~~~~~~~~~--~-~~~~lfV~nLp~~~t----ee~L~~~F~~~G~i~~v~v~~d~~g-~srg~~FV~F~~~e 258 (637)
.+++.+...++.+.... + ....+-+.+-.+... ++.+..+...+. +..-... ..+- -.+...+
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~------l~~~~~a~al~~---~~~t~~~ 181 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDE------LQEPGNADALKE---NDTTKSE 181 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccc------cCCccccccCCC---ccccchh
Confidence 77776654444322221 1 112222222111111 000000000000 0000000 0000 0111111
Q ss_pred HHHHHHHHHcCCCCCCcEEEEeccchhhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEE
Q 006641 259 AAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITS 338 (637)
Q Consensus 259 ~A~~Av~~lng~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~ 338 (637)
.-..+..... .. .. ..+..+.--.....+.+|||-||..++||++|+.+|+.|-....
T Consensus 182 ~l~a~~~~~P----------------~a--~a----~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~ 239 (284)
T KOG1457|consen 182 ALSAPDSKAP----------------SA--NA----HLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHI 239 (284)
T ss_pred hhhhhhhcCC----------------cc--cc----hhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceE
Confidence 1111110000 00 00 11111111112234567999999999999999999999987777
Q ss_pred EEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 006641 339 CKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMI 375 (637)
Q Consensus 339 ~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~ 375 (637)
++|... .| -..|||+|++.+.|..|+..|.|..+
T Consensus 240 l~~~~~-~g--~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 240 LKIRAR-GG--MPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred EEEecC-CC--cceEeecHHHHHHHHHHHHHhhccee
Confidence 777543 22 46799999999999999999998776
No 71
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1.3e-13 Score=128.24 Aligned_cols=82 Identities=30% Similarity=0.496 Sum_probs=78.1
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d-~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
...++|.|.||+.++++++|+++|.+||.|.+|.|.+| .+|.+||||||.|.+.++|.+||..|||+-.+.-.|+|.|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 35678999999999999999999999999999999999 48999999999999999999999999999999999999999
Q ss_pred cch
Q 006641 386 QRK 388 (637)
Q Consensus 386 ~~~ 388 (637)
+++
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 875
No 72
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=2.6e-14 Score=134.18 Aligned_cols=166 Identities=26% Similarity=0.407 Sum_probs=131.4
Q ss_pred ceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCCCCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccchhh
Q 006641 207 TNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRA 286 (637)
Q Consensus 207 ~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~~~~ 286 (637)
..+||++|++...+.+|..+|..||.+.++.+.. +|+||.|++..+|..|+..+++..+.+..+.+.++....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~-------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN-------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec-------ccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 3689999999999999999999999999887754 489999999999999999999999999988888876421
Q ss_pred hHHHHH---HHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHH
Q 006641 287 EREADL---RAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEA 363 (637)
Q Consensus 287 ~~~~~~---~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A 363 (637)
...... .+.. ....-.......+.|.|.|+..++.+.+|.++|+++|.++...++ ++++||+|++.++|
T Consensus 75 ~~~g~~~~g~r~~-~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-------~~~~~v~Fs~~~da 146 (216)
T KOG0106|consen 75 RGRGRPRGGDRRS-DSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-------RNFAFVEFSEQEDA 146 (216)
T ss_pred cccCCCCCCCccc-hhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-------ccccceeehhhhhh
Confidence 111000 0000 000000112235679999999999999999999999999766653 67899999999999
Q ss_pred HHHHHHhCCceeCCEEEEEEEccc
Q 006641 364 TRALNEMNGKMIGRKPLYVAVAQR 387 (637)
Q Consensus 364 ~~A~~~~~g~~~~g~~l~V~~a~~ 387 (637)
.+|+..+++..+.++.|.+...-.
T Consensus 147 ~ra~~~l~~~~~~~~~l~~~~~~~ 170 (216)
T KOG0106|consen 147 KRALEKLDGKKLNGRRISVEKNSR 170 (216)
T ss_pred hhcchhccchhhcCceeeecccCc
Confidence 999999999999999999954443
No 73
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=1.9e-13 Score=120.92 Aligned_cols=79 Identities=34% Similarity=0.578 Sum_probs=73.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeecc
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSH 105 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~ 105 (637)
-++.|||+||+..+++.||...|..||++.+|+|-+... |||||+|+++.||+.|+..|++..|+|..|+|+.|.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP-----GfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP-----GFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC-----CceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 478999999999999999999999999999999988655 899999999999999999999999999999999997
Q ss_pred CCCc
Q 006641 106 RDPS 109 (637)
Q Consensus 106 ~~~~ 109 (637)
-.+-
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 6543
No 74
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.45 E-value=1.5e-12 Score=119.31 Aligned_cols=153 Identities=22% Similarity=0.351 Sum_probs=119.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEee-eCCCCCcccEEEEEecChHHHHHHHHHcCCCcc---CCcceee
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCR-DQSKRSSLGYAYVNYSNPQDAANAKEALNFMPI---NGKPIRI 101 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~-d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i---~g~~iri 101 (637)
.-+||||.+||.++..-||+.+|..|-..+...+.. ++..+..+-+|||.|.+..+|..|+..||+..| .+..++|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 369999999999999999999999987665555433 233233457999999999999999999999777 4889999
Q ss_pred eeccCCCcccc-CC------------------------------------------------------------------
Q 006641 102 MYSHRDPSIRK-SG------------------------------------------------------------------ 114 (637)
Q Consensus 102 ~~s~~~~~~~~-~~------------------------------------------------------------------ 114 (637)
.+++...-..+ ..
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 88653210000 00
Q ss_pred -----------------CccEEEeCCCccccHHHHHhHhhccCceeEEEEeECCCCCceeEEEEEecCHHHHHHHHHHhc
Q 006641 115 -----------------YGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLN 177 (637)
Q Consensus 115 -----------------~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~ln 177 (637)
-.++||.||..+++|++|+.+|+.|-....+++. .+.| ...||++|++.+.|..||..|+
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~-~~~g--~~vaf~~~~~~~~at~am~~lq 269 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIR-ARGG--MPVAFADFEEIEQATDAMNHLQ 269 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEe-cCCC--cceEeecHHHHHHHHHHHHHhh
Confidence 0139999999999999999999999876666654 2233 3589999999999999999999
Q ss_pred CCee
Q 006641 178 GMLI 181 (637)
Q Consensus 178 g~~i 181 (637)
|..+
T Consensus 270 g~~~ 273 (284)
T KOG1457|consen 270 GNLL 273 (284)
T ss_pred ccee
Confidence 8775
No 75
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.44 E-value=3e-13 Score=130.40 Aligned_cols=75 Identities=20% Similarity=0.294 Sum_probs=69.7
Q ss_pred cccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 309 GANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 309 ~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
.++|||+||++.+|+++|+++|+.||+|++|+|+.|. .++|||||+|.++++|.+|+ .|+|..|.|+.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~--~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN--ERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC--CCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEecc
Confidence 4679999999999999999999999999999999885 35799999999999999999 599999999999999865
No 76
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=5.1e-13 Score=107.46 Aligned_cols=88 Identities=22% Similarity=0.386 Sum_probs=79.8
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCc
Q 006641 18 TAAVPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGK 97 (637)
Q Consensus 18 ~~~~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~ 97 (637)
+++-.++.-++-|||+|||.++|.++++++|.+||+|..|||-..+.|+ |.|||.|++..||++|++.|++..+.++
T Consensus 9 ~~~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~Tr---GTAFVVYedi~dAk~A~dhlsg~n~~~r 85 (124)
T KOG0114|consen 9 QNIRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETR---GTAFVVYEDIFDAKKACDHLSGYNVDNR 85 (124)
T ss_pred CCCCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcC---ceEEEEehHhhhHHHHHHHhcccccCCc
Confidence 4556677889999999999999999999999999999999997777666 8999999999999999999999999999
Q ss_pred ceeeeeccCCC
Q 006641 98 PIRIMYSHRDP 108 (637)
Q Consensus 98 ~iri~~s~~~~ 108 (637)
.+.|.+.+...
T Consensus 86 yl~vlyyq~~~ 96 (124)
T KOG0114|consen 86 YLVVLYYQPED 96 (124)
T ss_pred eEEEEecCHHH
Confidence 99999876543
No 77
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.42 E-value=4.7e-13 Score=105.80 Aligned_cols=70 Identities=33% Similarity=0.593 Sum_probs=64.8
Q ss_pred EEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCccee
Q 006641 30 LYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIR 100 (637)
Q Consensus 30 L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ir 100 (637)
|||+|||+++++++|+++|+.+|.|..|++.+++. ++++|+|||+|.+.++|.+|++.+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 78899999999999999999999998999999875
No 78
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.41 E-value=2.2e-12 Score=131.15 Aligned_cols=125 Identities=27% Similarity=0.496 Sum_probs=109.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeecc-
Q 006641 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSH- 105 (637)
Q Consensus 27 ~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~- 105 (637)
..+|||+|||.++|+++|+++|..||.|..|++..|+.+++++|||||.|.+.++|..|++.+++..|.|++|+|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999953
Q ss_pred ---CCCcc------------------ccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECC
Q 006641 106 ---RDPSI------------------RKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS 151 (637)
Q Consensus 106 ---~~~~~------------------~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~ 151 (637)
..... .......+++.+++..++..++...|..+|.+....+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSK 261 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCC
Confidence 11111 11123469999999999999999999999999666665444
No 79
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.40 E-value=4.2e-12 Score=124.94 Aligned_cols=248 Identities=16% Similarity=0.190 Sum_probs=175.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeE-EEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeee
Q 006641 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVV-SVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMY 103 (637)
Q Consensus 25 ~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~-~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~ 103 (637)
..+..+..++||+..++.++..+|+-.--+. -+-+|.... ++..|++.|.|.+.|.-+-|++. +...+.++.|.+..
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~q-grRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYk 135 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQ-GRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYK 135 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhh-hccccceEEEecCchhhhhhhHh-hhhhccCCceeeec
Confidence 3567888999999999999999997543211 233454444 45559999999999999999954 45556778887766
Q ss_pred ccCCCcccc--------------CCCccEEEeCCCccccHHHHHhHhhc----cCceeEEEEeECCCCCceeEEEEEecC
Q 006641 104 SHRDPSIRK--------------SGYGNVFIKNLDTSIDNKALCDTFAA----FGTVLSCKVAIDSNGQSKGYGFVQFEN 165 (637)
Q Consensus 104 s~~~~~~~~--------------~~~~~i~V~nLp~~it~~~L~~~F~~----~G~I~s~~v~~~~~g~skg~afV~F~~ 165 (637)
+..+..... ...-.|.+++||.++++.++.++|.. -|..+.+.++...+|+..|-|||.|..
T Consensus 136 a~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ 215 (508)
T KOG1365|consen 136 ATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFAC 215 (508)
T ss_pred cCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecC
Confidence 554432222 22234788999999999999999962 234566777777799999999999999
Q ss_pred HHHHHHHHHHhcCCeeCCeeeEEeeeehhh--------h-----------------hhhccCCCccceEEecCCCccCCH
Q 006641 166 EEAAQNAIKMLNGMLINDKQVYVGLFVRRQ--------E-----------------RAQQNVSPKFTNVYVNNLAETVTD 220 (637)
Q Consensus 166 ~e~A~~Ai~~lng~~i~~~~l~V~~~~~~~--------~-----------------~~~~~~~~~~~~lfV~nLp~~~te 220 (637)
+++|..|+.+.. ..++.+-|.+-.+.... . ...........+|.+++||.+.+.
T Consensus 216 ee~aq~aL~khr-q~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~Atv 294 (508)
T KOG1365|consen 216 EEDAQFALRKHR-QNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATV 294 (508)
T ss_pred HHHHHHHHHHHH-HHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhH
Confidence 999999997633 22333333221111000 0 000011223578999999999999
Q ss_pred HHHHHhhcccCCee-E--EEEeeCCCCCcceeeEeecCCHHHHHHHHHHHcCCCCCCc
Q 006641 221 EDLKKIFGHFGTIT-S--AIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDK 275 (637)
Q Consensus 221 e~L~~~F~~~G~i~-~--v~v~~d~~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~ 275 (637)
|+|.++|..|-.-. - +.+.-+..|+..|-+||+|.+.++|..|..+.+.+....+
T Consensus 295 EdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~R 352 (508)
T KOG1365|consen 295 EDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSR 352 (508)
T ss_pred HHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccc
Confidence 99999999886532 2 5667777899999999999999999999887765544333
No 80
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=6e-13 Score=125.03 Aligned_cols=148 Identities=22% Similarity=0.428 Sum_probs=125.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeeccCC
Q 006641 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRD 107 (637)
Q Consensus 28 ~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~~~ 107 (637)
..+||++||+.+.+.+|..+|..||.|..|.+.. ||+||+|.+..||..|+..||+..|.|..+.++|....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4799999999999999999999999998877633 69999999999999999999999999988888887631
Q ss_pred ------Cc--ccc----------CCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECCCCCceeEEEEEecCHHHH
Q 006641 108 ------PS--IRK----------SGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAA 169 (637)
Q Consensus 108 ------~~--~~~----------~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~~g~skg~afV~F~~~e~A 169 (637)
+- .++ .....++|.+++..+.+.+|.+.|..+|.+..... ..+++||+|.+.++|
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da 146 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDA 146 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhhhhh
Confidence 10 111 12346999999999999999999999999843322 567999999999999
Q ss_pred HHHHHHhcCCeeCCeeeEEee
Q 006641 170 QNAIKMLNGMLINDKQVYVGL 190 (637)
Q Consensus 170 ~~Ai~~lng~~i~~~~l~V~~ 190 (637)
.+|++.|++..++++.|.+..
T Consensus 147 ~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 147 KRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred hhcchhccchhhcCceeeecc
Confidence 999999999999999999843
No 81
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.38 E-value=1.7e-12 Score=125.33 Aligned_cols=76 Identities=20% Similarity=0.297 Sum_probs=70.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeeccC
Q 006641 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHR 106 (637)
Q Consensus 27 ~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~~ 106 (637)
.++|||+|||+++||++|+++|+.||.|.+|+|++|..+ .|||||+|.+.++|+.|| .||+..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~---~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENER---SQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 579999999999999999999999999999999999753 489999999999999999 6999999999999999753
No 82
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.38 E-value=4.2e-13 Score=121.53 Aligned_cols=78 Identities=24% Similarity=0.437 Sum_probs=74.6
Q ss_pred cccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 309 GANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 309 ~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
.+.|.|.||.+.++.++|+.+|++||.|-+|.|..|. +..++|||||.|.+..+|+.|+++|+|.+++|+.|.|.+|+
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 4579999999999999999999999999999999995 78899999999999999999999999999999999999886
No 83
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=8.5e-13 Score=116.84 Aligned_cols=77 Identities=25% Similarity=0.446 Sum_probs=71.8
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccc
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQR 387 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~ 387 (637)
..++|||+||+..+++.||+.+|..||.|.+|.|-.. ..|||||+|+++.+|..|+..|+|+.|+|..|.|++..-
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 4678999999999999999999999999999999875 479999999999999999999999999999999998874
Q ss_pred h
Q 006641 388 K 388 (637)
Q Consensus 388 ~ 388 (637)
+
T Consensus 85 ~ 85 (195)
T KOG0107|consen 85 R 85 (195)
T ss_pred C
Confidence 3
No 84
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=6.1e-14 Score=124.44 Aligned_cols=78 Identities=27% Similarity=0.505 Sum_probs=75.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeee
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMY 103 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~ 103 (637)
.++.|||||||.++||.+|.-+|++||+|..|.++||+.|++|+||||+.|++-.+-.-|++.||+..|.||.|||-.
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999964
No 85
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=1.2e-12 Score=121.62 Aligned_cols=77 Identities=23% Similarity=0.400 Sum_probs=71.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeec
Q 006641 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYS 104 (637)
Q Consensus 27 ~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s 104 (637)
-++||||+|++++..+.|+++|++||+|++..|+.|+.|+||+||+||.|.+.+.|.+|++.-| -.|+||+..+..+
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA 88 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLA 88 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchh
Confidence 4799999999999999999999999999999999999999999999999999999999997655 4689998877654
No 86
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.35 E-value=1.3e-11 Score=129.97 Aligned_cols=164 Identities=12% Similarity=0.067 Sum_probs=127.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeecc
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSH 105 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~ 105 (637)
+..-+-+...+.+.++.+++++|... .|.++.+..+...+...|-+||.|....++.+|+ +-|...+..|.+.|.-.-
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~-~rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAF-TRNPSDDVNRPFQTGPPG 387 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHH-hcCchhhhhcceeecCCC
Confidence 45667778999999999999998543 5667777788776666799999999999999999 446666667777665322
Q ss_pred CCC----------------------------cccc---------CCCccEEEeCCCccccHHHHHhHhhccCceeE-EEE
Q 006641 106 RDP----------------------------SIRK---------SGYGNVFIKNLDTSIDNKALCDTFAAFGTVLS-CKV 147 (637)
Q Consensus 106 ~~~----------------------------~~~~---------~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s-~~v 147 (637)
.+. ..+. .....|||..||...++..+.++|...-.|++ +.+
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 110 0001 11235999999999999999999999877776 777
Q ss_pred eECCCCCceeEEEEEecCHHHHHHHHHHhcCCeeCCeeeEEeee
Q 006641 148 AIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLF 191 (637)
Q Consensus 148 ~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~~~~l~V~~~ 191 (637)
...+++..++.|||.|.+++++..|...-....++.+.|.|...
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 77778899999999999999988888766667777788888654
No 87
>smart00362 RRM_2 RNA recognition motif.
Probab=99.35 E-value=4e-12 Score=100.25 Aligned_cols=72 Identities=43% Similarity=0.734 Sum_probs=68.0
Q ss_pred cccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 006641 311 NLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVA 383 (637)
Q Consensus 311 ~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~ 383 (637)
+|||+|||..+++++|+++|++||.|..+.+..+. +.++|+|||+|.+.++|.+|+..+++..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999999887 7789999999999999999999999999999999873
No 88
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.35 E-value=1.8e-11 Score=119.61 Aligned_cols=168 Identities=17% Similarity=0.272 Sum_probs=136.1
Q ss_pred CccEEEeCCCccccHHHHHhHhhccCcee--------EEEEeECCCCCceeEEEEEecCHHHHHHHHHHhcCCeeCCeee
Q 006641 115 YGNVFIKNLDTSIDNKALCDTFAAFGTVL--------SCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQV 186 (637)
Q Consensus 115 ~~~i~V~nLp~~it~~~L~~~F~~~G~I~--------s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~~~~l 186 (637)
+.+|||.|||.++|.+++.++|+.+|.|. .|++..+.+|..+|-|++.|...++...|++.|++..+.|+.|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 45799999999999999999999999874 5899999999999999999999999999999999999999999
Q ss_pred EEeeeehhhhh--------------------------------hhccCCCccceEEecCC--Cc--cCC-------HHHH
Q 006641 187 YVGLFVRRQER--------------------------------AQQNVSPKFTNVYVNNL--AE--TVT-------DEDL 223 (637)
Q Consensus 187 ~V~~~~~~~~~--------------------------------~~~~~~~~~~~lfV~nL--p~--~~t-------ee~L 223 (637)
.|..+.-...- .........++|.++|+ |. ..+ .++|
T Consensus 214 rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl 293 (382)
T KOG1548|consen 214 RVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDL 293 (382)
T ss_pred EEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHH
Confidence 99775321100 00112234567888887 21 223 3567
Q ss_pred HHhhcccCCeeEEEEeeCCCCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccchh
Q 006641 224 KKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKR 285 (637)
Q Consensus 224 ~~~F~~~G~i~~v~v~~d~~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~~~ 285 (637)
++-+++||.|.++.|... .+.|-+-|.|.+.+.|..|++.|+|..++|+.|.......+
T Consensus 294 ~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 294 TEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 777899999999988654 34668899999999999999999999999999987766543
No 89
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.35 E-value=3.1e-12 Score=121.28 Aligned_cols=76 Identities=16% Similarity=0.263 Sum_probs=70.2
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
.+.+|||+||++.+|+++|+++|+.||+|++|+|.+| +..++||||+|.++++|..|+ .|+|..|.+++|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 4678999999999999999999999999999999998 566789999999999999999 899999999999997443
No 90
>PLN03213 repressor of silencing 3; Provisional
Probab=99.34 E-value=2.3e-12 Score=130.51 Aligned_cols=78 Identities=22% Similarity=0.389 Sum_probs=72.3
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCH--HHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMP--EEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~--~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
.+.+|||+||++.+|+++|+.+|+.||.|.+|.|+++ +| ||||||+|.+. +++.+||..|||..+.|+.|+|..|
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 4567999999999999999999999999999999954 45 99999999987 7899999999999999999999999
Q ss_pred cch
Q 006641 386 QRK 388 (637)
Q Consensus 386 ~~~ 388 (637)
++.
T Consensus 86 KP~ 88 (759)
T PLN03213 86 KEH 88 (759)
T ss_pred cHH
Confidence 876
No 91
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=1e-14 Score=157.19 Aligned_cols=322 Identities=17% Similarity=0.168 Sum_probs=237.4
Q ss_pred CcEEEEcCCCCCCcHHHHH-HHHhccCCe-EEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeec
Q 006641 27 NVSLYVGDLEQNVNESQLY-DLFSQVAQV-VSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYS 104 (637)
Q Consensus 27 ~~~L~V~nLp~~~te~~L~-~~f~~~G~V-~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s 104 (637)
.+.++|.|-+..-+...+. .+|+.++-+ ..++. ..++..+..||+.-.+.++|..+++.+.......-++.+.-+
T Consensus 479 d~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~---~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~ 555 (881)
T KOG0128|consen 479 DKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDG---PSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDL 555 (881)
T ss_pred hhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCc---hhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhh
Confidence 4667788888887887777 666665422 11111 112234457999999999999999887765555444333211
Q ss_pred cCCCcc-----ccCCCccEEEeCCCccccHH-HHHhHhhccCceeEEEEeECC-CCCceeEEEEEecCHHHHHHHHHHhc
Q 006641 105 HRDPSI-----RKSGYGNVFIKNLDTSIDNK-ALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKMLN 177 (637)
Q Consensus 105 ~~~~~~-----~~~~~~~i~V~nLp~~it~~-~L~~~F~~~G~I~s~~v~~~~-~g~skg~afV~F~~~e~A~~Ai~~ln 177 (637)
...... ..-......+.|+.+....+ ..+..|..+|.|..+++.... .-....+.++.+....+++.|... .
T Consensus 556 ~~~~~~pr~~~~~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~p-a 634 (881)
T KOG0128|consen 556 CPEKVLPRVYEAPLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVP-A 634 (881)
T ss_pred hHHhhcchhhhhhhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccc-c
Confidence 111000 01112346677777776666 577889999999998876522 222233788999999999988864 6
Q ss_pred CCeeCCeeeEEeeeehhhhhhhccCC----CccceEEecCCCccCCHHHHHHhhcccCCeeEEEEe-eCCCCCcceeeEe
Q 006641 178 GMLINDKQVYVGLFVRRQERAQQNVS----PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVM-KDSDGKSRCFGFV 252 (637)
Q Consensus 178 g~~i~~~~l~V~~~~~~~~~~~~~~~----~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~-~d~~g~srg~~FV 252 (637)
+..+.++...|....++..+...... ....++|++||+..+.+++|...|..+|.+..+.+. ....++.||.||+
T Consensus 635 ~~~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~ 714 (881)
T KOG0128|consen 635 GGALANRSAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYV 714 (881)
T ss_pred ccccCCccccCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceee
Confidence 66677788888777666654333332 234679999999999999999999999998877766 3346889999999
Q ss_pred ecCCHHHHHHHHHHHcCCCCCCcEEEEeccchhhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhh
Q 006641 253 NFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSE 332 (637)
Q Consensus 253 ~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~ 332 (637)
.|..++++.+|+....+..+ | ...|+|.|+|+..|.++|+.+|+.
T Consensus 715 ~F~~~~~~~aaV~f~d~~~~-g----------------------------------K~~v~i~g~pf~gt~e~~k~l~~~ 759 (881)
T KOG0128|consen 715 EFLKPEHAGAAVAFRDSCFF-G----------------------------------KISVAISGPPFQGTKEELKSLASK 759 (881)
T ss_pred EeecCCchhhhhhhhhhhhh-h----------------------------------hhhhheeCCCCCCchHHHHhhccc
Confidence 99999999999965433222 2 124999999999999999999999
Q ss_pred cCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccc
Q 006641 333 FGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQR 387 (637)
Q Consensus 333 ~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~ 387 (637)
+|+++++.++....|+.+|.+||.|.++.+|.+++..+....+.-+.+.|.+..+
T Consensus 760 ~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 760 TGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred cCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 9999999999989999999999999999999999999988888888888887776
No 92
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=2.3e-13 Score=120.77 Aligned_cols=77 Identities=23% Similarity=0.415 Sum_probs=73.0
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d-~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~ 384 (637)
.+..|||+|||++.||.||-.+|++||+|..|.+++| .+|+|+||||+||++..+-.-|+..|||..|.||.|+|..
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 3567999999999999999999999999999999999 5999999999999999999999999999999999999954
No 93
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=3.6e-12 Score=107.56 Aligned_cols=81 Identities=20% Similarity=0.357 Sum_probs=77.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeeccC
Q 006641 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHR 106 (637)
Q Consensus 27 ~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~~ 106 (637)
.=.|||.++++.+||++|.+.|..||+|++|++..|+.|+-.+|||+|+|.+.++|..|++.+|+..+.|..|.|.|+.-
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred C
Q 006641 107 D 107 (637)
Q Consensus 107 ~ 107 (637)
.
T Consensus 152 ~ 152 (170)
T KOG0130|consen 152 K 152 (170)
T ss_pred c
Confidence 3
No 94
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=1.4e-11 Score=99.31 Aligned_cols=82 Identities=24% Similarity=0.413 Sum_probs=73.7
Q ss_pred cccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccch
Q 006641 309 GANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRK 388 (637)
Q Consensus 309 ~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~~ 388 (637)
..-|||+|||+.+|.|+..++|.+||.|..|+|-..+ ..+|.|||.|++..+|.+|+..|+|..+.++.|.|-+.++.
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCcc--CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 3459999999999999999999999999999997663 34899999999999999999999999999999999999876
Q ss_pred HHHH
Q 006641 389 EERK 392 (637)
Q Consensus 389 ~~~~ 392 (637)
+..+
T Consensus 96 ~~~~ 99 (124)
T KOG0114|consen 96 DAFK 99 (124)
T ss_pred HHHH
Confidence 5443
No 95
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=7.3e-12 Score=119.93 Aligned_cols=82 Identities=22% Similarity=0.409 Sum_probs=77.1
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d-~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
.+=++|||.-|+.+++|.+|+..|+.||.|+.|.|+.| .+|+++|||||+|+++.+...|.+..+|..|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 45678999999999999999999999999999999999 59999999999999999999999999999999999999876
Q ss_pred cch
Q 006641 386 QRK 388 (637)
Q Consensus 386 ~~~ 388 (637)
...
T Consensus 179 RgR 181 (335)
T KOG0113|consen 179 RGR 181 (335)
T ss_pred ccc
Confidence 644
No 96
>smart00360 RRM RNA recognition motif.
Probab=99.28 E-value=1.7e-11 Score=96.23 Aligned_cols=70 Identities=41% Similarity=0.708 Sum_probs=65.8
Q ss_pred ccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 006641 314 LKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVA 383 (637)
Q Consensus 314 V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~ 383 (637)
|+|||..+++++|+++|++||.|..+.+..+. ++.++|+|||+|.+.++|.+|+..+++..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999885 58889999999999999999999999999999999873
No 97
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.28 E-value=1.4e-11 Score=125.31 Aligned_cols=164 Identities=30% Similarity=0.451 Sum_probs=123.9
Q ss_pred cceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCC-CCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccch
Q 006641 206 FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS-DGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQK 284 (637)
Q Consensus 206 ~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~-~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~~ 284 (637)
..+|||+||+.++++++|.++|..||.|..+.+..+. .++++|||||.|.+.+++..|++.+++..+.|+.+.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5899999999999999999999999999999999995 799999999999999999999999999999999999999642
Q ss_pred ----hhhHHH--HHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCC-cccEEEEEe
Q 006641 285 ----RAEREA--DLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGF-SKGSGFAAF 357 (637)
Q Consensus 285 ----~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~-~~g~afV~f 357 (637)
+..... .....................+++.+++..++..++...|..+|.+....+.....+. ...+.++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 222110 0000000111122234456789999999999999999999999999777776654322 334444555
Q ss_pred CCHHHHHHHHHH
Q 006641 358 SMPEEATRALNE 369 (637)
Q Consensus 358 ~~~~~A~~A~~~ 369 (637)
.....+......
T Consensus 275 ~~~~~~~~~~~~ 286 (306)
T COG0724 275 EASKDALESNSR 286 (306)
T ss_pred hHHHhhhhhhcc
Confidence 555555554443
No 98
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=1.5e-11 Score=117.84 Aligned_cols=85 Identities=25% Similarity=0.411 Sum_probs=79.0
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcce
Q 006641 20 AVPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPI 99 (637)
Q Consensus 20 ~~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~i 99 (637)
+.+...+=+||||+-|+++++|.+|+..|+.||+|+.|++++|+.|++|+|||||+|.+..|-..|.+..++..|+|+.|
T Consensus 94 p~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri 173 (335)
T KOG0113|consen 94 PNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRI 173 (335)
T ss_pred CcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEE
Confidence 33455677999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeec
Q 006641 100 RIMYS 104 (637)
Q Consensus 100 ri~~s 104 (637)
-|-+-
T Consensus 174 ~VDvE 178 (335)
T KOG0113|consen 174 LVDVE 178 (335)
T ss_pred EEEec
Confidence 88653
No 99
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.7e-12 Score=118.45 Aligned_cols=82 Identities=26% Similarity=0.478 Sum_probs=77.7
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d-~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
..++|||++|.+++||.-|...|-+||.|..|.+..| ++++.||||||+|...|+|..||..||+.++.||.|+|.+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 3467999999999999999999999999999999999 688999999999999999999999999999999999999998
Q ss_pred chH
Q 006641 387 RKE 389 (637)
Q Consensus 387 ~~~ 389 (637)
+..
T Consensus 89 P~k 91 (298)
T KOG0111|consen 89 PEK 91 (298)
T ss_pred Ccc
Confidence 764
No 100
>smart00362 RRM_2 RNA recognition motif.
Probab=99.27 E-value=1.9e-11 Score=96.40 Aligned_cols=71 Identities=38% Similarity=0.704 Sum_probs=66.6
Q ss_pred EEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceee
Q 006641 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI 101 (637)
Q Consensus 29 ~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri 101 (637)
+|||+|||..+++++|+++|+.||+|..+++.++. +.+.|+|||+|.+.++|++|++.+++..|.|++++|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999999887 567799999999999999999999999999998876
No 101
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.26 E-value=3.6e-11 Score=95.32 Aligned_cols=74 Identities=39% Similarity=0.706 Sum_probs=69.8
Q ss_pred cccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 006641 311 NLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384 (637)
Q Consensus 311 ~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~ 384 (637)
+|+|+|||..+++++|+++|+.||.|..+.+..+..+.++|+|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 38999999999999999999999999999999987777899999999999999999999999999999999864
No 102
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=3.6e-11 Score=124.89 Aligned_cols=155 Identities=20% Similarity=0.235 Sum_probs=108.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeee
Q 006641 24 GYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMY 103 (637)
Q Consensus 24 ~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~ 103 (637)
.-+.++|+|-|||.+|++++|+.+|+.||+|+.|+..+.+. |.+||+|.+..+|++|+++||...|.|+.|+.-.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~-----~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~ 146 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKR-----GIVFVEFYDVRDAERALKALNRREIAGKRIKRPG 146 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccC-----ceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCC
Confidence 34679999999999999999999999999999988766655 8999999999999999999999999999987322
Q ss_pred ccCCCcc--------------------ccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECCCCCceeEEEEEe
Q 006641 104 SHRDPSI--------------------RKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQF 163 (637)
Q Consensus 104 s~~~~~~--------------------~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~~g~skg~afV~F 163 (637)
+.+.... .......+|+- |++..+..-+...++.+|.+.. + +++.-.-.-|++|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~----~~~~~~hq~~~~~ 220 (549)
T KOG4660|consen 147 GARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-R----ETPLLNHQRFVEF 220 (549)
T ss_pred cccccchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-c----cccchhhhhhhhh
Confidence 2111000 00001234433 8888887666677777777644 2 1222222567777
Q ss_pred cCHHHHHHHHHHhcCCeeCCeeeEEee
Q 006641 164 ENEEAAQNAIKMLNGMLINDKQVYVGL 190 (637)
Q Consensus 164 ~~~e~A~~Ai~~lng~~i~~~~l~V~~ 190 (637)
.+..++..+.... |+.+.+.......
T Consensus 221 ~~~~s~a~~~~~~-G~~~s~~~~v~t~ 246 (549)
T KOG4660|consen 221 ADNRSYAFSEPRG-GFLISNSSGVITF 246 (549)
T ss_pred ccccchhhcccCC-ceecCCCCceEEe
Confidence 7777775555433 6666666644433
No 103
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.26 E-value=2.4e-11 Score=115.32 Aligned_cols=76 Identities=22% Similarity=0.298 Sum_probs=69.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeecc
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSH 105 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~ 105 (637)
...+|||+||++++||++|+++|+.||.|.+|++++|..++ ++|||+|.+.++|+.|+ .||+..|.+++|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~---gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYA---CTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcc---eEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 35799999999999999999999999999999999996544 79999999999999999 899999999999997543
No 104
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=1.7e-11 Score=118.85 Aligned_cols=83 Identities=22% Similarity=0.377 Sum_probs=75.4
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCccee
Q 006641 21 VPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIR 100 (637)
Q Consensus 21 ~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ir 100 (637)
.++....++|+|+|||...-|.||+..|.+||.|++|.|+-+-+ -|+||+||.|++.+||+||-++|++..|.||+|.
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER--GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER--GSKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccC--CCCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 34455678999999999999999999999999999999998754 6889999999999999999999999999999999
Q ss_pred eeecc
Q 006641 101 IMYSH 105 (637)
Q Consensus 101 i~~s~ 105 (637)
|..+.
T Consensus 168 Vn~AT 172 (376)
T KOG0125|consen 168 VNNAT 172 (376)
T ss_pred Eeccc
Confidence 97663
No 105
>smart00360 RRM RNA recognition motif.
Probab=99.25 E-value=2.4e-11 Score=95.43 Aligned_cols=70 Identities=39% Similarity=0.710 Sum_probs=66.7
Q ss_pred EcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceee
Q 006641 32 VGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI 101 (637)
Q Consensus 32 V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri 101 (637)
|+|||..+++++|+++|+.||.|..++++++..+++++|||||+|.+.++|.+|++.+++..+.|+.++|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 6899999999999999999999999999999888899999999999999999999999999999999876
No 106
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=1.2e-11 Score=103.68 Aligned_cols=82 Identities=23% Similarity=0.355 Sum_probs=74.5
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
..+++|||+||+..++||+|.++|++.|+|..|.+-.|+ +...=||+||+|.+.++|..|++-++|..++.++|.|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 357899999999999999999999999999999887775 4456799999999999999999999999999999999987
Q ss_pred cch
Q 006641 386 QRK 388 (637)
Q Consensus 386 ~~~ 388 (637)
-.=
T Consensus 114 ~GF 116 (153)
T KOG0121|consen 114 AGF 116 (153)
T ss_pred ccc
Confidence 543
No 107
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.24 E-value=1.9e-11 Score=128.07 Aligned_cols=82 Identities=27% Similarity=0.508 Sum_probs=79.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeeccCC
Q 006641 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRD 107 (637)
Q Consensus 28 ~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~~~ 107 (637)
++|||||||++++|++|.++|+..|+|.++++..|+.|++++||+|++|.+.++|++|++.||+.++.|++|+|.|...+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred Cc
Q 006641 108 PS 109 (637)
Q Consensus 108 ~~ 109 (637)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 108
>PLN03213 repressor of silencing 3; Provisional
Probab=99.23 E-value=2.6e-11 Score=122.97 Aligned_cols=77 Identities=26% Similarity=0.414 Sum_probs=70.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecCh--HHHHHHHHHcCCCccCCcceeeee
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNP--QDAANAKEALNFMPINGKPIRIMY 103 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~--e~A~~Al~~ln~~~i~g~~iri~~ 103 (637)
...+||||||.+++++++|..+|..||.|.+|.|+|+ |+ +|||||+|.+. .++.+||+.||+..++|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 4579999999999999999999999999999999955 44 69999999988 689999999999999999999988
Q ss_pred ccC
Q 006641 104 SHR 106 (637)
Q Consensus 104 s~~ 106 (637)
++.
T Consensus 85 AKP 87 (759)
T PLN03213 85 AKE 87 (759)
T ss_pred ccH
Confidence 764
No 109
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.22 E-value=5.1e-11 Score=89.47 Aligned_cols=56 Identities=34% Similarity=0.672 Sum_probs=51.6
Q ss_pred HHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 326 LKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 326 L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
|+++|++||+|+++.+..+. +++|||+|.+.++|.+|++.|||..++|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999998763 699999999999999999999999999999999986
No 110
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.22 E-value=1.7e-11 Score=111.21 Aligned_cols=82 Identities=27% Similarity=0.453 Sum_probs=78.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeec
Q 006641 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYS 104 (637)
Q Consensus 25 ~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s 104 (637)
....+|.|-||.+-++.++|+.+|++||.|-.|.|.+|..|+.+.|||||.|....||+.|+++|++..+.|+.|+|.++
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cC
Q 006641 105 HR 106 (637)
Q Consensus 105 ~~ 106 (637)
.-
T Consensus 91 ry 92 (256)
T KOG4207|consen 91 RY 92 (256)
T ss_pred hc
Confidence 53
No 111
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.21 E-value=7.5e-11 Score=93.45 Aligned_cols=74 Identities=41% Similarity=0.748 Sum_probs=68.9
Q ss_pred EEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeee
Q 006641 29 SLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMY 103 (637)
Q Consensus 29 ~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~ 103 (637)
+|+|+|||+.+++++|+++|+.+|.|..+.+..+..+ ++.|+|||+|.+.++|..|++.+++..+.|+.+.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999999998865 6679999999999999999999999999999998864
No 112
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.20 E-value=3.8e-10 Score=119.04 Aligned_cols=167 Identities=15% Similarity=0.026 Sum_probs=119.8
Q ss_pred EEEeCCCccccHHHHHhHhhccCceeEEEEeECC-CCCceeEEEEEecCHHHHHHHHHHhcCCeeCCeeeEEeeeehhhh
Q 006641 118 VFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQE 196 (637)
Q Consensus 118 i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~i~~~~l~V~~~~~~~~ 196 (637)
+-++..+.+.+..+++++|... .|.+..+..+. .+...|.++|.|....++.+|++. |.+..-++.+.+........
T Consensus 314 ~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~~~~ 391 (944)
T KOG4307|consen 314 NNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGNLGR 391 (944)
T ss_pred eeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCcccc
Confidence 5667888888999999998764 45666666655 444478999999999999999985 44444455555543321110
Q ss_pred h-----------------------------hhc----cCCCccceEEecCCCccCCHHHHHHhhcccCCeeE-EEEeeCC
Q 006641 197 R-----------------------------AQQ----NVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITS-AIVMKDS 242 (637)
Q Consensus 197 ~-----------------------------~~~----~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~-v~v~~d~ 242 (637)
. ... .......+|||..||..+++.++.++|...-.|++ |.+....
T Consensus 392 ~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P 471 (944)
T KOG4307|consen 392 NGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP 471 (944)
T ss_pred ccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC
Confidence 0 000 00112467999999999999999999998888877 6666777
Q ss_pred CCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccchhh
Q 006641 243 DGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKRA 286 (637)
Q Consensus 243 ~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~~~~ 286 (637)
+++.++-|||.|..++++..|...-+...++.+.|.|....++.
T Consensus 472 ~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~ 515 (944)
T KOG4307|consen 472 TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYA 515 (944)
T ss_pred cccccchhhheeccccccchhhhcccccccCceEEEeechhhHH
Confidence 88999999999999988888876555555666777776665443
No 113
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.19 E-value=3.6e-11 Score=125.94 Aligned_cols=82 Identities=28% Similarity=0.500 Sum_probs=77.7
Q ss_pred ccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccch
Q 006641 310 ANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRK 388 (637)
Q Consensus 310 ~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d-~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~~ 388 (637)
++|||+|+|+++++|+|.++|+..|.|.+++++.| ++|++|||||++|.+.++|.+|++.|||..++||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999 58999999999999999999999999999999999999999765
Q ss_pred HHH
Q 006641 389 EER 391 (637)
Q Consensus 389 ~~~ 391 (637)
..+
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 443
No 114
>smart00361 RRM_1 RNA recognition motif.
Probab=99.17 E-value=1.1e-10 Score=92.01 Aligned_cols=61 Identities=25% Similarity=0.522 Sum_probs=54.4
Q ss_pred HHHHHHHHh----hcCCeEEEE-Eeec-CC--CCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 006641 323 DEKLKELFS----EFGTITSCK-VMVD-QH--GFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVA 383 (637)
Q Consensus 323 ~e~L~~~F~----~~G~i~~~~-i~~d-~~--g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~ 383 (637)
+++|+++|+ .||.|.+|. |..+ .+ +.++|||||+|.+.++|.+|++.|||+.+.|+.|.++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 678888988 999999995 6555 34 8899999999999999999999999999999999863
No 115
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.16 E-value=2.7e-09 Score=114.53 Aligned_cols=79 Identities=23% Similarity=0.437 Sum_probs=72.9
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccc
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQR 387 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~ 387 (637)
-+++|||+.|+..+++.||..+|+.||+|.+|.++.. +|||||+.....+|.+|+.+|++..+.++.|+|+||..
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 3578999999999999999999999999999999755 89999999999999999999999999999999999986
Q ss_pred hHHH
Q 006641 388 KEER 391 (637)
Q Consensus 388 ~~~~ 391 (637)
+..+
T Consensus 495 ~G~k 498 (894)
T KOG0132|consen 495 KGPK 498 (894)
T ss_pred CCcc
Confidence 6444
No 116
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.16 E-value=4.2e-11 Score=101.19 Aligned_cols=83 Identities=19% Similarity=0.440 Sum_probs=77.4
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d-~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~ 384 (637)
...+--|||.++..+.|+++|.+.|..||+|+.+.+-.| .+|..||||+|+|.+.++|++|+.++||..+.|..|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 345667999999999999999999999999999999998 5899999999999999999999999999999999999999
Q ss_pred ccch
Q 006641 385 AQRK 388 (637)
Q Consensus 385 a~~~ 388 (637)
+-.+
T Consensus 149 ~Fv~ 152 (170)
T KOG0130|consen 149 CFVK 152 (170)
T ss_pred EEec
Confidence 8654
No 117
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=3.9e-11 Score=109.71 Aligned_cols=84 Identities=24% Similarity=0.435 Sum_probs=80.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeec
Q 006641 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYS 104 (637)
Q Consensus 25 ~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s 104 (637)
-..++||||+|-.+++|..|...|-.||-|+.|.+..|..+++++||+||+|.-.|||..||+.||..++.||.|||.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 006641 105 HRDP 108 (637)
Q Consensus 105 ~~~~ 108 (637)
.+..
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 7654
No 118
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.12 E-value=4.8e-11 Score=111.90 Aligned_cols=171 Identities=24% Similarity=0.385 Sum_probs=132.9
Q ss_pred ceEEecCCCccCCHHH-H--HHhhcccCCeeEEEEeeCCCCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccc
Q 006641 207 TNVYVNNLAETVTDED-L--KKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQ 283 (637)
Q Consensus 207 ~~lfV~nLp~~~tee~-L--~~~F~~~G~i~~v~v~~d~~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~ 283 (637)
-..+++++-..+..+- | ...|+-+-......+.++..+.-++++|+.|.....-.++-..-+++.+....+.....+
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gt 176 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGT 176 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccc
Confidence 3455666655555554 3 566777777777777788778889999999988887777766666666666666666665
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeec-CCCCcccEEEEEeCCHHH
Q 006641 284 KRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEE 362 (637)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d-~~g~~~g~afV~f~~~~~ 362 (637)
.+...... .......+||.+.|..+++++.|-..|.+|-.-...++++| ++|+++||+||.|.++++
T Consensus 177 swedPsl~------------ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad 244 (290)
T KOG0226|consen 177 SWEDPSLA------------EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPAD 244 (290)
T ss_pred ccCCcccc------------cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHH
Confidence 55432211 11223457999999999999999999999999899999999 599999999999999999
Q ss_pred HHHHHHHhCCceeCCEEEEEEEccchH
Q 006641 363 ATRALNEMNGKMIGRKPLYVAVAQRKE 389 (637)
Q Consensus 363 A~~A~~~~~g~~~~g~~l~V~~a~~~~ 389 (637)
+.+|+.+|+|+.++.++|.+.-..-++
T Consensus 245 ~~rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 245 YVRAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred HHHHHHhhcccccccchhHhhhhhHHh
Confidence 999999999999999999987665554
No 119
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.11 E-value=1.7e-10 Score=86.63 Aligned_cols=56 Identities=34% Similarity=0.727 Sum_probs=51.6
Q ss_pred HHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeec
Q 006641 44 LYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYS 104 (637)
Q Consensus 44 L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s 104 (637)
|+++|++||.|.+|++.++. .++|||+|.+.++|++|++.||+..+.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999998877 279999999999999999999999999999999986
No 120
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=2.1e-11 Score=111.62 Aligned_cols=154 Identities=21% Similarity=0.347 Sum_probs=128.4
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceee
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI 101 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri 101 (637)
++++.+++|||+|+-..++|+.|.|+|-+.|+|..|.|..++..... ||||+|.++-...-|++-+|+..+.+++++|
T Consensus 4 aaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k--Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~ 81 (267)
T KOG4454|consen 4 AAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK--FAYVFFPNENSVQLAGQLENGDDLEEDEEQR 81 (267)
T ss_pred CCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc--eeeeecccccchhhhhhhcccchhccchhhc
Confidence 34566899999999999999999999999999999999888765433 9999999999999999999999999999988
Q ss_pred eeccCCCccccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECCCCCceeEEEEEecCHHHHHHHHHHhcCCee
Q 006641 102 MYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLI 181 (637)
Q Consensus 102 ~~s~~~~~~~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~i 181 (637)
.+-.-..- .-|...++++.++..|+..|.+..+++-.+.+|.++.++|+.+......-.++....++..
T Consensus 82 ~~r~G~sh-----------apld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 82 TLRCGNSH-----------APLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred ccccCCCc-----------chhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 64321100 1277889999999999999999999998888899999999999888888788877776665
Q ss_pred CCeeeEE
Q 006641 182 NDKQVYV 188 (637)
Q Consensus 182 ~~~~l~V 188 (637)
.-+++.+
T Consensus 151 ~~~~~~~ 157 (267)
T KOG4454|consen 151 FQKKVTI 157 (267)
T ss_pred CCCCccc
Confidence 5554444
No 121
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.4e-10 Score=113.24 Aligned_cols=84 Identities=24% Similarity=0.392 Sum_probs=80.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeee
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIM 102 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~ 102 (637)
..++...|||..|.|-+|+++|.-+|+.||+|.++.|+||..|+.||.||||+|.+.++.++|.-.|++..|..+.|.|-
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccC
Q 006641 103 YSHR 106 (637)
Q Consensus 103 ~s~~ 106 (637)
||+.
T Consensus 315 FSQS 318 (479)
T KOG0415|consen 315 FSQS 318 (479)
T ss_pred hhhh
Confidence 9864
No 122
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=2.9e-09 Score=109.94 Aligned_cols=167 Identities=23% Similarity=0.310 Sum_probs=121.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCC--CCCccc---EEEEEecChHHHHHHHHHcCC--------
Q 006641 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQS--KRSSLG---YAYVNYSNPQDAANAKEALNF-------- 91 (637)
Q Consensus 25 ~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~--t~~s~g---~a~V~F~~~e~A~~Al~~ln~-------- 91 (637)
.-++.||||+||++++|++|...|..||++.-=+-.+... .-.++| |+|+.|+++.....-|.++..
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~ 336 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFK 336 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEE
Confidence 3479999999999999999999999999763322212211 122456 999999999999888876542
Q ss_pred ---CccCCcceeee-eccCC------CccccCCCccEEEeCCCccccHHHHHhHhh-ccCceeEEEEeEC-CCCCceeEE
Q 006641 92 ---MPINGKPIRIM-YSHRD------PSIRKSGYGNVFIKNLDTSIDNKALCDTFA-AFGTVLSCKVAID-SNGQSKGYG 159 (637)
Q Consensus 92 ---~~i~g~~iri~-~s~~~------~~~~~~~~~~i~V~nLp~~it~~~L~~~F~-~~G~I~s~~v~~~-~~g~skg~a 159 (637)
..++.+.+.|. |--.| .+..-...++|||+.||..++.++|..+|+ .||.|+-+-|-+| +-+-.+|-|
T Consensus 337 vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaG 416 (520)
T KOG0129|consen 337 VSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAG 416 (520)
T ss_pred EecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcc
Confidence 12233444443 22212 223334457899999999999999999999 7999999999888 477899999
Q ss_pred EEEecCHHHHHHHHHH----hcCCeeCCeeeEEeeee
Q 006641 160 FVQFENEEAAQNAIKM----LNGMLINDKQVYVGLFV 192 (637)
Q Consensus 160 fV~F~~~e~A~~Ai~~----lng~~i~~~~l~V~~~~ 192 (637)
-|.|.+..+-.+||.+ |+... .+|+|.|+.+.
T Consensus 417 RVtFsnqqsYi~AIsarFvql~h~d-~~KRVEIkPYv 452 (520)
T KOG0129|consen 417 RVTFSNQQAYIKAISARFVQLDHTD-IDKRVEIKPYV 452 (520)
T ss_pred eeeecccHHHHHHHhhheEEEeccc-cceeeeeccee
Confidence 9999999999999974 12222 24466666555
No 123
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=2.9e-11 Score=130.92 Aligned_cols=229 Identities=15% Similarity=0.158 Sum_probs=182.9
Q ss_pred CCCcEEEEcCCCCCCcHH-HHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeee
Q 006641 25 YGNVSLYVGDLEQNVNES-QLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMY 103 (637)
Q Consensus 25 ~~~~~L~V~nLp~~~te~-~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~ 103 (637)
...+..++.++-+..... .....|..+|.|+.|+....+....+--+.++.+....+++.|. ......+.++.+.+..
T Consensus 569 ~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat-~pa~~~~a~~~~av~~ 647 (881)
T KOG0128|consen 569 LERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESAT-VPAGGALANRSAAVGL 647 (881)
T ss_pred hhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcc-cccccccCCccccCCC
Confidence 345678888998887776 46788999999999998774443334338999999999999998 5566778888887776
Q ss_pred ccCCCccccCC--------CccEEEeCCCccccHHHHHhHhhccCceeEEEEeEC-CCCCceeEEEEEecCHHHHHHHHH
Q 006641 104 SHRDPSIRKSG--------YGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAID-SNGQSKGYGFVQFENEEAAQNAIK 174 (637)
Q Consensus 104 s~~~~~~~~~~--------~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~-~~g~skg~afV~F~~~e~A~~Ai~ 174 (637)
+.......... ..++||+||+..+.+.+|...|..+|.+..+.+... ..+..+|+||+.|...+++.+|+.
T Consensus 648 ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~ 727 (881)
T KOG0128|consen 648 ADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVA 727 (881)
T ss_pred CCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhh
Confidence 65544322221 235999999999999999999999998888777633 367899999999999999999998
Q ss_pred HhcCCeeCCeeeEEeeeehhhhhhhccCCCccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCCCCCcceeeEeec
Q 006641 175 MLNGMLINDKQVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNF 254 (637)
Q Consensus 175 ~lng~~i~~~~l~V~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~~g~srg~~FV~F 254 (637)
....+.++ ...++|.|.|+..|+++++.++..+|.+++..+....+|+.+|.++|.|
T Consensus 728 f~d~~~~g-----------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y 784 (881)
T KOG0128|consen 728 FRDSCFFG-----------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDY 784 (881)
T ss_pred hhhhhhhh-----------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccC
Confidence 75554443 2468999999999999999999999999999998989999999999999
Q ss_pred CCHHHHHHHHHHHcCCCCCCcEE
Q 006641 255 QSPDAAAAAVEKLNGTTNNDKVW 277 (637)
Q Consensus 255 ~~~e~A~~Av~~lng~~~~g~~l 277 (637)
.+..++.+++.......+.-..+
T Consensus 785 ~~ea~~s~~~~s~d~~~~rE~~~ 807 (881)
T KOG0128|consen 785 NTEADASRKVASVDVAGKRENNG 807 (881)
T ss_pred CCcchhhhhcccchhhhhhhcCc
Confidence 99999998886655444433333
No 124
>smart00361 RRM_1 RNA recognition motif.
Probab=99.02 E-value=8e-10 Score=87.05 Aligned_cols=61 Identities=21% Similarity=0.343 Sum_probs=55.4
Q ss_pred HHHHHHHHh----ccCCeEEEE-EeeeCCC--CCcccEEEEEecChHHHHHHHHHcCCCccCCcceee
Q 006641 41 ESQLYDLFS----QVAQVVSVR-VCRDQSK--RSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI 101 (637)
Q Consensus 41 e~~L~~~f~----~~G~V~~i~-v~~d~~t--~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri 101 (637)
+++|+++|+ .||.|.+|. |..++.+ ++++|||||.|.+.++|.+|++.||+..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999996 7777766 889999999999999999999999999999999876
No 125
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=7.4e-10 Score=108.28 Aligned_cols=84 Identities=30% Similarity=0.447 Sum_probs=79.1
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d-~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~ 384 (637)
.++...|||.-|..-+|+|+|.-+|+.||.|.+|.|++| ++|.+-.||||+|++.+++.+|.-.|++..|+.+.|+|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 456778999999999999999999999999999999999 6899999999999999999999999999999999999999
Q ss_pred ccchH
Q 006641 385 AQRKE 389 (637)
Q Consensus 385 a~~~~ 389 (637)
++.-.
T Consensus 316 SQSVs 320 (479)
T KOG0415|consen 316 SQSVS 320 (479)
T ss_pred hhhhh
Confidence 88654
No 126
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.93 E-value=6.5e-08 Score=94.64 Aligned_cols=76 Identities=18% Similarity=0.194 Sum_probs=65.2
Q ss_pred ccccccCCCCCCCHHHHHHHHhhcC--CeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 310 ANLYLKNLDDSINDEKLKELFSEFG--TITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 310 ~~l~V~nL~~~~t~e~L~~~F~~~G--~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
.++||+||-|++|++||.+....-| .+.+++++.++ +|+|||||+|...+..+.++-++.|-.++|.|..-.|.-.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 4699999999999999999998877 56777888774 8999999999999999999999999999998876555433
No 127
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.92 E-value=2.9e-09 Score=97.53 Aligned_cols=83 Identities=20% Similarity=0.315 Sum_probs=75.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcc-CCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeee
Q 006641 25 YGNVSLYVGDLEQNVNESQLYDLFSQV-AQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMY 103 (637)
Q Consensus 25 ~~~~~L~V~nLp~~~te~~L~~~f~~~-G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~ 103 (637)
....-+||..||.-+.|.++..+|.++ |.|+.+++.|+++|+.|+|||||+|++.+.|+-|-++||+..+.++.+.+.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 345689999999999999999999888 7899999999999999999999999999999999999999999999988877
Q ss_pred ccCC
Q 006641 104 SHRD 107 (637)
Q Consensus 104 s~~~ 107 (637)
-..+
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 6444
No 128
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.89 E-value=5.1e-10 Score=102.67 Aligned_cols=136 Identities=24% Similarity=0.341 Sum_probs=117.8
Q ss_pred ccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCCCCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccch
Q 006641 205 KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQK 284 (637)
Q Consensus 205 ~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~~ 284 (637)
..++|||.|+...++++-|.++|-+.|+|..+.|..+.++..+ |+||.|+++.++.-|++.+||..+.+..+.+
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~----- 81 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR----- 81 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhc-----
Confidence 3478999999999999999999999999999999888888877 9999999999999999999998887766543
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhcccccccccC----CCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCH
Q 006641 285 RAEREADLRAKFEQERISRYEKLKGANLYLKN----LDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMP 360 (637)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n----L~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~ 360 (637)
+++.++ |+..+++|.+.+.|+.-|.++.+++..+.+|+.+.++|+.+.-.
T Consensus 82 --------------------------~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~ 135 (267)
T KOG4454|consen 82 --------------------------TLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRL 135 (267)
T ss_pred --------------------------ccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhh
Confidence 355666 78899999999999999999999999998899999999998766
Q ss_pred HHHHHHHHHhCC
Q 006641 361 EEATRALNEMNG 372 (637)
Q Consensus 361 ~~A~~A~~~~~g 372 (637)
.+.-.++..-.+
T Consensus 136 ~~~P~~~~~y~~ 147 (267)
T KOG4454|consen 136 CAVPFALDLYQG 147 (267)
T ss_pred hcCcHHhhhhcc
Confidence 666666654444
No 129
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.89 E-value=3.2e-09 Score=104.19 Aligned_cols=80 Identities=23% Similarity=0.398 Sum_probs=70.1
Q ss_pred hhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCC-ceeCCEEEE
Q 006641 303 RYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG-KMIGRKPLY 381 (637)
Q Consensus 303 ~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g-~~~~g~~l~ 381 (637)
......-.+|||++|.+.++|.+|+++|.+||+|+++.++.. +++|||+|.+.++|++|..+.-+ ..|+|++|.
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 334445568999999999999999999999999999999877 67999999999999988877654 557999999
Q ss_pred EEEccc
Q 006641 382 VAVAQR 387 (637)
Q Consensus 382 V~~a~~ 387 (637)
|.|..+
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 999987
No 130
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.88 E-value=4.8e-09 Score=102.98 Aligned_cols=82 Identities=27% Similarity=0.459 Sum_probs=72.4
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHH-cCCCccCCc
Q 006641 19 AAVPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA-LNFMPINGK 97 (637)
Q Consensus 19 ~~~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~-ln~~~i~g~ 97 (637)
...+-....++|||++|-..++|.+|+++|-+||+|.+|++..... +|||+|.+.+.|+.|.++ +|...|+|+
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~------CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKG------CAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccc------cceeeehhhHHHHHHHHhhcceeeecce
Confidence 3344455679999999999999999999999999999999988764 899999999999999876 567889999
Q ss_pred ceeeeeccC
Q 006641 98 PIRIMYSHR 106 (637)
Q Consensus 98 ~iri~~s~~ 106 (637)
+|+|.|+..
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 999999876
No 131
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.84 E-value=3.9e-09 Score=99.23 Aligned_cols=166 Identities=22% Similarity=0.373 Sum_probs=129.1
Q ss_pred CCCcEEEEcCCCCCCcHHH-H--HHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceee
Q 006641 25 YGNVSLYVGDLEQNVNESQ-L--YDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI 101 (637)
Q Consensus 25 ~~~~~L~V~nLp~~~te~~-L--~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri 101 (637)
+.--.++++++=+.+..+- | ...|+.+-.....++.++.. +..++.+|+.|.....-.++-..-++..|.-.+||+
T Consensus 94 P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~ 172 (290)
T KOG0226|consen 94 PAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRL 172 (290)
T ss_pred cccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhccccccccccCcceee
Confidence 3445666777766666554 3 67788877777777777765 455689999998766656665555566666666877
Q ss_pred ee--ccCCCcc--ccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECC-CCCceeEEEEEecCHHHHHHHHHHh
Q 006641 102 MY--SHRDPSI--RKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIKML 176 (637)
Q Consensus 102 ~~--s~~~~~~--~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~-~g~skg~afV~F~~~e~A~~Ai~~l 176 (637)
.- +..|+++ -+....+||.+.|-.+++.+-|...|..|-.....++++|. +|+++||+||.|.+..++..|+..+
T Consensus 173 a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem 252 (290)
T KOG0226|consen 173 AAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREM 252 (290)
T ss_pred ccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhh
Confidence 53 2234443 34556789999999999999999999999999999999998 9999999999999999999999999
Q ss_pred cCCeeCCeeeEEeee
Q 006641 177 NGMLINDKQVYVGLF 191 (637)
Q Consensus 177 ng~~i~~~~l~V~~~ 191 (637)
+|+.++.+.|.+.-.
T Consensus 253 ~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 253 NGKYVGSRPIKLRKS 267 (290)
T ss_pred cccccccchhHhhhh
Confidence 999999998877543
No 132
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.82 E-value=1e-08 Score=106.94 Aligned_cols=79 Identities=25% Similarity=0.407 Sum_probs=68.6
Q ss_pred cccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccc
Q 006641 309 GANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQR 387 (637)
Q Consensus 309 ~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~ 387 (637)
...|||+|||.+++.++|+++|..||.|+...|.... .+++.+||||+|.+.+++..||++- -..+++++|.|+..++
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEeccc
Confidence 4459999999999999999999999999999988764 4555699999999999999999665 6788999999986654
Q ss_pred h
Q 006641 388 K 388 (637)
Q Consensus 388 ~ 388 (637)
.
T Consensus 367 ~ 367 (419)
T KOG0116|consen 367 G 367 (419)
T ss_pred c
Confidence 3
No 133
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.81 E-value=7.4e-09 Score=111.20 Aligned_cols=73 Identities=27% Similarity=0.499 Sum_probs=69.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeecc
Q 006641 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSH 105 (637)
Q Consensus 27 ~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~ 105 (637)
++|||||.|+..++|.+|.++|+.||.|.+|.++..+ |||||.+.+..||++|+.+|++..+.++.|+|.|+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R------~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR------GCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC------ceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 7999999999999999999999999999999998765 599999999999999999999999999999999984
No 134
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.76 E-value=1.6e-08 Score=92.77 Aligned_cols=80 Identities=24% Similarity=0.382 Sum_probs=73.0
Q ss_pred cccccccCCCCCCCHHHHHHHHhhc-CCeEEEEEeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 309 GANLYLKNLDDSINDEKLKELFSEF-GTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 309 ~~~l~V~nL~~~~t~e~L~~~F~~~-G~i~~~~i~~d-~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
...+||+.+|..+.+.++..+|.+| |.|+.+++-++ ++|.|||||||+|++++.|.-|.+.||+..+.++-|.|.+-.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 3458999999999999999999999 67888888666 699999999999999999999999999999999999999877
Q ss_pred ch
Q 006641 387 RK 388 (637)
Q Consensus 387 ~~ 388 (637)
+.
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 66
No 135
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=5.9e-08 Score=100.50 Aligned_cols=160 Identities=16% Similarity=0.312 Sum_probs=113.6
Q ss_pred CccceEEecCCCccCCHHHHHHhhcccCCeeEEEEe-eC-CC--CCcce---eeEeecCCHHHHHHHHHHHcCCCCCCcE
Q 006641 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVM-KD-SD--GKSRC---FGFVNFQSPDAAAAAVEKLNGTTNNDKV 276 (637)
Q Consensus 204 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~-~d-~~--g~srg---~~FV~F~~~e~A~~Av~~lng~~~~g~~ 276 (637)
...+.|||++||++++|+.|...|..||.+.- ... +. .. -..+| |+|+.|+++.++..-+.++.. +...
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~ 332 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGN 332 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccc
Confidence 45688999999999999999999999998742 222 11 11 23566 999999999999887776543 3333
Q ss_pred EEEeccchhhhHHH-HH------HHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHh-hcCCeEEEEEeec-CCC
Q 006641 277 WYVGRAQKRAEREA-DL------RAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFS-EFGTITSCKVMVD-QHG 347 (637)
Q Consensus 277 l~v~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~-~~G~i~~~~i~~d-~~g 347 (637)
++............ .. ...+-.. ....-.+..+|||++||.-++.++|-.+|+ -||.|..+-|-.| +-+
T Consensus 333 ~yf~vss~~~k~k~VQIrPW~laDs~fv~d--~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~K 410 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKEVQIRPWVLADSDFVLD--HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLK 410 (520)
T ss_pred eEEEEecCcccccceeEEeeEeccchhhhc--cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccC
Confidence 44333222111100 00 0000000 111233567899999999999999999999 7999999999999 567
Q ss_pred CcccEEEEEeCCHHHHHHHHHH
Q 006641 348 FSKGSGFAAFSMPEEATRALNE 369 (637)
Q Consensus 348 ~~~g~afV~f~~~~~A~~A~~~ 369 (637)
..||-|-|+|.+..+-.+||.+
T Consensus 411 YPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 411 YPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCCcceeeecccHHHHHHHhh
Confidence 7999999999999999999965
No 136
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.67 E-value=1.1e-08 Score=102.69 Aligned_cols=175 Identities=23% Similarity=0.282 Sum_probs=133.9
Q ss_pred ccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeC-CCCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccc
Q 006641 205 KFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKD-SDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQ 283 (637)
Q Consensus 205 ~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d-~~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~ 283 (637)
..++.|++++.+.+.+.+...++...|.+..+.+... ....+++++.+.|...+.+..++.........+..+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 4678999999999999989999999998777766553 457889999999999999999996544344444443333322
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhhccccccc-ccCCCCCCCHHHHHHHHhhcCCeEEEEEeec-CCCCcccEEEEEeCCHH
Q 006641 284 KRAEREADLRAKFEQERISRYEKLKGANLY-LKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPE 361 (637)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d-~~g~~~g~afV~f~~~~ 361 (637)
....+.. ....+.......++| |+||+.++++++|+.+|..+|.|+.+++..+ .++.++||+||+|.+..
T Consensus 167 ~~~~~~~--------n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~ 238 (285)
T KOG4210|consen 167 RRGLRPK--------NKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGN 238 (285)
T ss_pred ccccccc--------chhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhch
Confidence 2210000 001111222333455 9999999999999999999999999999988 48889999999999999
Q ss_pred HHHHHHHHhCCceeCCEEEEEEEccch
Q 006641 362 EATRALNEMNGKMIGRKPLYVAVAQRK 388 (637)
Q Consensus 362 ~A~~A~~~~~g~~~~g~~l~V~~a~~~ 388 (637)
.+..++.. ....+.++++.+....+.
T Consensus 239 ~~~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 239 SKKLALND-QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred hHHHHhhc-ccCcccCcccccccCCCC
Confidence 99999987 889999999999877765
No 137
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.67 E-value=1.2e-07 Score=78.36 Aligned_cols=78 Identities=21% Similarity=0.328 Sum_probs=68.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcc--CCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccC----Ccceee
Q 006641 28 VSLYVGDLEQNVNESQLYDLFSQV--AQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPIN----GKPIRI 101 (637)
Q Consensus 28 ~~L~V~nLp~~~te~~L~~~f~~~--G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~----g~~iri 101 (637)
+||+|+|||...|.++|.+++... |...-+.+.-|-.++.++|||||+|.++++|.+..+.+++..+. .|.|.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999988543 68888999999999999999999999999999999999987764 467777
Q ss_pred eecc
Q 006641 102 MYSH 105 (637)
Q Consensus 102 ~~s~ 105 (637)
.|+.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 7764
No 138
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.64 E-value=7e-08 Score=93.27 Aligned_cols=81 Identities=28% Similarity=0.500 Sum_probs=76.6
Q ss_pred cccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccch
Q 006641 309 GANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRK 388 (637)
Q Consensus 309 ~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~~ 388 (637)
.++|+|.||+..++++||+++|..||.++.+-+..|+.|.+.|.|-|.|...++|.+|++.++|..++|+++.+.+..+.
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999888765
Q ss_pred H
Q 006641 389 E 389 (637)
Q Consensus 389 ~ 389 (637)
.
T Consensus 163 ~ 163 (243)
T KOG0533|consen 163 S 163 (243)
T ss_pred c
Confidence 4
No 139
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.60 E-value=2.4e-08 Score=109.16 Aligned_cols=159 Identities=18% Similarity=0.281 Sum_probs=134.8
Q ss_pred cceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCCCCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEeccchh
Q 006641 206 FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRAQKR 285 (637)
Q Consensus 206 ~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~~~~ 285 (637)
..+||++||+..+++.+|+..|..+|.|.++.+....-+.-.-|+||.|.+.+.+..|...+.+..|....+.+.....+
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~k 451 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQPK 451 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccccc
Confidence 46799999999999999999999999999999877665666669999999999999999888888776665555554321
Q ss_pred hhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHH
Q 006641 286 AEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATR 365 (637)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~ 365 (637)
....+.++|++|..++....|...|..||.|..|.+-.. --|++|.|.+...|+.
T Consensus 452 --------------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----q~yayi~yes~~~aq~ 506 (975)
T KOG0112|consen 452 --------------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----QPYAYIQYESPPAAQA 506 (975)
T ss_pred --------------------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----CcceeeecccCccchh
Confidence 123456999999999999999999999999999887543 4589999999999999
Q ss_pred HHHHhCCceeCC--EEEEEEEccchH
Q 006641 366 ALNEMNGKMIGR--KPLYVAVAQRKE 389 (637)
Q Consensus 366 A~~~~~g~~~~g--~~l~V~~a~~~~ 389 (637)
|++.|.|..|+| +++.|.|+...-
T Consensus 507 a~~~~rgap~G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 507 ATHDMRGAPLGGPPRRLRVDLASPPG 532 (975)
T ss_pred hHHHHhcCcCCCCCcccccccccCCC
Confidence 999999999975 779999998653
No 140
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.60 E-value=7.3e-08 Score=99.78 Aligned_cols=80 Identities=25% Similarity=0.445 Sum_probs=73.3
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
..+.||+|.+|...+-..+|+.+|++||.|.-.+|+.+. +-.-++|+||++.+.++|.++|..||.+.+.|+.|.|.-+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 456789999999999999999999999999999999883 4446899999999999999999999999999999999888
Q ss_pred c
Q 006641 386 Q 386 (637)
Q Consensus 386 ~ 386 (637)
+
T Consensus 483 K 483 (940)
T KOG4661|consen 483 K 483 (940)
T ss_pred c
Confidence 6
No 141
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.57 E-value=1.5e-07 Score=97.45 Aligned_cols=82 Identities=23% Similarity=0.427 Sum_probs=76.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeeccC
Q 006641 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHR 106 (637)
Q Consensus 27 ~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~~ 106 (637)
.+.|||.+|...+--.+|+.+|++||.|+-.+|+.+..+.-..+|+||++.+.++|.+||+.|+.+.+.|+-|.|..++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 58999999998888899999999999999999999998888889999999999999999999999999999999998876
Q ss_pred CC
Q 006641 107 DP 108 (637)
Q Consensus 107 ~~ 108 (637)
.+
T Consensus 485 Ep 486 (940)
T KOG4661|consen 485 EP 486 (940)
T ss_pred Cc
Confidence 54
No 142
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.57 E-value=1.2e-07 Score=100.98 Aligned_cols=81 Identities=23% Similarity=0.398 Sum_probs=71.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeC---CCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeee
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQ---SKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIM 102 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~---~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~ 102 (637)
..+.|||+||+++++|..|...|..||+|.+|+|.-.+ ..++-..|+||-|-+..||++|++.|++..+.+..+++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 45899999999999999999999999999999997433 223445699999999999999999999999999999999
Q ss_pred eccC
Q 006641 103 YSHR 106 (637)
Q Consensus 103 ~s~~ 106 (637)
|++.
T Consensus 253 Wgk~ 256 (877)
T KOG0151|consen 253 WGKA 256 (877)
T ss_pred cccc
Confidence 9853
No 143
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.51 E-value=1e-07 Score=95.80 Aligned_cols=169 Identities=21% Similarity=0.288 Sum_probs=134.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeec
Q 006641 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYS 104 (637)
Q Consensus 25 ~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s 104 (637)
...+++|++++-..+.+.+...++..+|.+....+......-.++|+++|.|...+.+..|+.......+.+..+..-..
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 35789999999999999989999999998888888777777788999999999999999999554333444444433322
Q ss_pred cCCC--------ccccCCCccEE-EeCCCccccHHHHHhHhhccCceeEEEEeECC-CCCceeEEEEEecCHHHHHHHHH
Q 006641 105 HRDP--------SIRKSGYGNVF-IKNLDTSIDNKALCDTFAAFGTVLSCKVAIDS-NGQSKGYGFVQFENEEAAQNAIK 174 (637)
Q Consensus 105 ~~~~--------~~~~~~~~~i~-V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~-~g~skg~afV~F~~~e~A~~Ai~ 174 (637)
..-. ..-.....+++ |.+|+.+++.++|+..|..+|.|..+++..++ ++..+|++||.|.....+..++.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 2211 11122234555 99999999999999999999999999998887 89999999999999999999998
Q ss_pred HhcCCeeCCeeeEEeeeehh
Q 006641 175 MLNGMLINDKQVYVGLFVRR 194 (637)
Q Consensus 175 ~lng~~i~~~~l~V~~~~~~ 194 (637)
. +...+.++.+.+....++
T Consensus 246 ~-~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 246 D-QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred c-ccCcccCcccccccCCCC
Confidence 7 778888888888765554
No 144
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.50 E-value=7.7e-08 Score=105.28 Aligned_cols=161 Identities=21% Similarity=0.277 Sum_probs=134.0
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceee
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI 101 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri 101 (637)
-....+++|+++||+..+++.+|+-.|..+|.|.+|.|-+-.....+ -|+||.|.+...+-+|.-.+....|..-.+++
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~es-a~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTES-AYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCccc-chhhhhhhccccCcccchhhcCCccccCcccc
Confidence 34567899999999999999999999999999999998776543333 59999999999999999999998888778888
Q ss_pred eeccCCCccccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECCCCCceeEEEEEecCHHHHHHHHHHhcCCee
Q 006641 102 MYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLI 181 (637)
Q Consensus 102 ~~s~~~~~~~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~i 181 (637)
.+.+. .....+.+|+++|..++....|...|..||.|..+.+- . ..-|+||.|++...+..|+..+.+..+
T Consensus 446 glG~~----kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~---h--gq~yayi~yes~~~aq~a~~~~rgap~ 516 (975)
T KOG0112|consen 446 GLGQP----KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR---H--GQPYAYIQYESPPAAQAATHDMRGAPL 516 (975)
T ss_pred ccccc----ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc---c--CCcceeeecccCccchhhHHHHhcCcC
Confidence 87754 12334569999999999999999999999999876653 2 234999999999999999999999888
Q ss_pred CC--eeeEEeeee
Q 006641 182 ND--KQVYVGLFV 192 (637)
Q Consensus 182 ~~--~~l~V~~~~ 192 (637)
++ +.+.|.+..
T Consensus 517 G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 517 GGPPRRLRVDLAS 529 (975)
T ss_pred CCCCccccccccc
Confidence 54 556666553
No 145
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.42 E-value=6.6e-07 Score=86.59 Aligned_cols=80 Identities=26% Similarity=0.419 Sum_probs=72.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeecc
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSH 105 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~ 105 (637)
.+..|+|.|||+.|++++|+++|..||.++.+-|--|.. ++|+|.|-|.|...+||++|++.+|+..+.|+++++....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 347899999999999999999999999888888777664 8899999999999999999999999999999999887654
Q ss_pred C
Q 006641 106 R 106 (637)
Q Consensus 106 ~ 106 (637)
.
T Consensus 161 ~ 161 (243)
T KOG0533|consen 161 S 161 (243)
T ss_pred C
Confidence 3
No 146
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.38 E-value=3.7e-07 Score=88.65 Aligned_cols=82 Identities=22% Similarity=0.320 Sum_probs=76.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeee
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIM 102 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~ 102 (637)
.....+++||+|+...+|-+++..+|+.||.|..|.|..|+.+++++||+||+|.+.+.++.++. ||+..|.|+.+.+.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 33457899999999999999999999999999999999999998899999999999999999996 99999999999998
Q ss_pred ecc
Q 006641 103 YSH 105 (637)
Q Consensus 103 ~s~ 105 (637)
|-.
T Consensus 176 ~~r 178 (231)
T KOG4209|consen 176 LKR 178 (231)
T ss_pred eee
Confidence 754
No 147
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.36 E-value=2.2e-06 Score=70.96 Aligned_cols=79 Identities=22% Similarity=0.375 Sum_probs=69.2
Q ss_pred ccccccCCCCCCCHHHHHHHHhhc--CCeEEEEEeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeC----CEEEEE
Q 006641 310 ANLYLKNLDDSINDEKLKELFSEF--GTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIG----RKPLYV 382 (637)
Q Consensus 310 ~~l~V~nL~~~~t~e~L~~~F~~~--G~i~~~~i~~d-~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~----g~~l~V 382 (637)
++|.|+|||...|.++|.+++... |....+.++.| .++.+.|||||.|.+++.|.+-.+.++|+... .|.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 579999999999999999998764 67788888888 56778999999999999999999999998774 788999
Q ss_pred EEccch
Q 006641 383 AVAQRK 388 (637)
Q Consensus 383 ~~a~~~ 388 (637)
.+|+-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 999754
No 148
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.34 E-value=1.1e-06 Score=91.84 Aligned_cols=79 Identities=16% Similarity=0.335 Sum_probs=68.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeecc
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSH 105 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~ 105 (637)
...+|||+|||.++++++|+++|+.||+|+..+|.......+.-+||||+|.+.+++..||++ +-..|+++++.|.--.
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 346699999999999999999999999999999987664444448999999999999999965 5788999999997543
No 149
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.26 E-value=9.8e-07 Score=85.74 Aligned_cols=82 Identities=22% Similarity=0.356 Sum_probs=74.6
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEE
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAV 384 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~ 384 (637)
......+||+|++..+|.+++..+|+.||.|..+.+..|. .+.+|||+||+|.+.+.+.+|+. |++..|.|+.+.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 3455679999999999999999999999999999999996 56799999999999999999997 999999999999998
Q ss_pred ccch
Q 006641 385 AQRK 388 (637)
Q Consensus 385 a~~~ 388 (637)
....
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 7654
No 150
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.16 E-value=2.6e-06 Score=91.10 Aligned_cols=82 Identities=28% Similarity=0.481 Sum_probs=74.1
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC----CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ----HGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLY 381 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~----~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~ 381 (637)
.+..+||||+||+..++++.|...|..||.|.+++||--. ..+.+.||||.|-+..+|.+|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 3457899999999999999999999999999999998642 455688999999999999999999999999999999
Q ss_pred EEEccc
Q 006641 382 VAVAQR 387 (637)
Q Consensus 382 V~~a~~ 387 (637)
+-|++.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 998864
No 151
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.13 E-value=3.6e-07 Score=91.79 Aligned_cols=153 Identities=24% Similarity=0.363 Sum_probs=120.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccC-CeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCC-CccCCcceeeeecc
Q 006641 28 VSLYVGDLEQNVNESQLYDLFSQVA-QVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNF-MPINGKPIRIMYSH 105 (637)
Q Consensus 28 ~~L~V~nLp~~~te~~L~~~f~~~G-~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~-~~i~g~~iri~~s~ 105 (637)
..||++||.+.++.++|..+|.... ++..-.+++. |||||++.+..-|.+|++++++ ..+.|+++.+..+-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~-------gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKS-------GYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeec-------ceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 4689999999999999999996542 2211122221 7999999999999999999987 57789999988775
Q ss_pred CCCccccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECCCCCceeEEEEEecCHHHHHHHHHHhcCCeeCCee
Q 006641 106 RDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQ 185 (637)
Q Consensus 106 ~~~~~~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~~~~ 185 (637)
... ...+.+-|+|+|+..-.+-|..++..||.+..|....... ..-..-|+|.+.+.+..||.++++..+.+..
T Consensus 75 ~kk----qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~--etavvnvty~~~~~~~~ai~kl~g~Q~en~~ 148 (584)
T KOG2193|consen 75 PKK----QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDS--ETAVVNVTYSAQQQHRQAIHKLNGPQLENQH 148 (584)
T ss_pred hHH----HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccch--HHHHHHHHHHHHHHHHHHHHhhcchHhhhhh
Confidence 432 2234589999999999999999999999999998754331 1223446899999999999999999998888
Q ss_pred eEEeeeeh
Q 006641 186 VYVGLFVR 193 (637)
Q Consensus 186 l~V~~~~~ 193 (637)
+.+.+...
T Consensus 149 ~k~~YiPd 156 (584)
T KOG2193|consen 149 LKVGYIPD 156 (584)
T ss_pred hhcccCch
Confidence 88887643
No 152
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.05 E-value=6.3e-07 Score=89.35 Aligned_cols=214 Identities=14% Similarity=0.177 Sum_probs=122.7
Q ss_pred CccEEEeCCCccccHHHHHhHhhccCceeEEEEeECCCC----CceeEEEEEecCHHHHHHHHHHhcCCeeCCeeeEEee
Q 006641 115 YGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNG----QSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGL 190 (637)
Q Consensus 115 ~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~~g----~skg~afV~F~~~e~A~~Ai~~lng~~i~~~~l~V~~ 190 (637)
.+.|.|.||.++++.++++.+|.-.|.|..+.|+.+.+. .....|||.|.+...+..|.. |.+..+-++.++|..
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 346899999999999999999999999999999875432 245589999999999988876 444444455555533
Q ss_pred eehhhhhhhccCCCccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCCCCCcceeeEeecCCHHHHHHHHHHHcCC
Q 006641 191 FVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGT 270 (637)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~~g~srg~~FV~F~~~e~A~~Av~~lng~ 270 (637)
... .+-++.. +|..++.-..+.-.-..+| |.|.+.... ..+.
T Consensus 86 ~~~-----------------------~~~p~r~--af~~l~~~navprll~pdg-------~Lp~~~~lt-----~~nh- 127 (479)
T KOG4676|consen 86 YGD-----------------------EVIPDRF--AFVELADQNAVPRLLPPDG-------VLPGDRPLT-----KINH- 127 (479)
T ss_pred cCC-----------------------CCCccHH--HHHhcCcccccccccCCCC-------ccCCCCccc-----cccC-
Confidence 211 1111111 3333333222211111111 111000000 0000
Q ss_pred CCCCcEEEEeccchhhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcc
Q 006641 271 TNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSK 350 (637)
Q Consensus 271 ~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~ 350 (637)
-..+.+.. + .+...+...+.+.. ..+++|.+|...|...++-+.|..+|+|....+-... ..
T Consensus 128 ---~p~ailkt--P------~Lp~~~~A~kleei----rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~---~s 189 (479)
T KOG4676|consen 128 ---SPNAILKT--P------ELPPQAAAKKLEEI----RRTREVQSLISAAILPESGESFERKGEVSYAHTASKS---RS 189 (479)
T ss_pred ---CccceecC--C------CCChHhhhhhhHHH----HhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccC---CC
Confidence 00000000 0 00000111111111 1469999999999999999999999999887775432 23
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEcc
Q 006641 351 GSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQ 386 (637)
Q Consensus 351 g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~ 386 (637)
-++-|.|........|+ .++|..+.-....+.+-+
T Consensus 190 ~~c~~sf~~qts~~hal-r~~gre~k~qhsr~ai~k 224 (479)
T KOG4676|consen 190 SSCSHSFRKQTSSKHAL-RSHGRERKRQHSRRAIIK 224 (479)
T ss_pred cchhhhHhhhhhHHHHH-HhcchhhhhhhhhhhhcC
Confidence 45669998888888888 666776654444444333
No 153
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.02 E-value=2.3e-06 Score=89.66 Aligned_cols=70 Identities=26% Similarity=0.428 Sum_probs=63.2
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLY 381 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~ 381 (637)
....|+|-|||..|++++|+.+|+.||+|..|+.-.. .+|..||+|-|..+|++|+++|++..+.|+.|.
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4557999999999999999999999999999655443 478999999999999999999999999999887
No 154
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.01 E-value=2.2e-05 Score=61.65 Aligned_cols=70 Identities=26% Similarity=0.389 Sum_probs=49.1
Q ss_pred cEEEEcCCCCCCcHHHH----HHHHhccC-CeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeee
Q 006641 28 VSLYVGDLEQNVNESQL----YDLFSQVA-QVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIM 102 (637)
Q Consensus 28 ~~L~V~nLp~~~te~~L----~~~f~~~G-~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~ 102 (637)
..|||.|||.+.+-..+ +.++..+| .|.+|. + +.|+|.|.+.+.|++|.+.|++..+.|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-------~---~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-------G---GTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------T---T-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-------C---CEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 46999999999888665 66676887 787763 1 479999999999999999999999999999999
Q ss_pred eccCC
Q 006641 103 YSHRD 107 (637)
Q Consensus 103 ~s~~~ 107 (637)
|+...
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 98544
No 155
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.01 E-value=7.5e-06 Score=69.50 Aligned_cols=78 Identities=28% Similarity=0.477 Sum_probs=49.7
Q ss_pred cccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCC-----ceeCCEEEEEE
Q 006641 309 GANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG-----KMIGRKPLYVA 383 (637)
Q Consensus 309 ~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g-----~~~~g~~l~V~ 383 (637)
|+.|+|.+++..++.++|++.|+.||.|..|.+... ...|||.|.+.++|++|+..+.- ..+.+..+.+.
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-----~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-----DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-----CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 467899999999999999999999999999999765 33699999999999999987743 36778888888
Q ss_pred EccchHHH
Q 006641 384 VAQRKEER 391 (637)
Q Consensus 384 ~a~~~~~~ 391 (637)
+-...++.
T Consensus 76 vLeGeeE~ 83 (105)
T PF08777_consen 76 VLEGEEEE 83 (105)
T ss_dssp ---HHHHH
T ss_pred ECCCHHHH
Confidence 77666554
No 156
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.00 E-value=2.4e-06 Score=86.00 Aligned_cols=153 Identities=22% Similarity=0.417 Sum_probs=119.7
Q ss_pred ceEEecCCCccCCHHHHHHhhcccCCe-eEEEEeeCCCCCcceeeEeecCCHHHHHHHHHHHcCCC-CCCcEEEEeccch
Q 006641 207 TNVYVNNLAETVTDEDLKKIFGHFGTI-TSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTT-NNDKVWYVGRAQK 284 (637)
Q Consensus 207 ~~lfV~nLp~~~tee~L~~~F~~~G~i-~~v~v~~d~~g~srg~~FV~F~~~e~A~~Av~~lng~~-~~g~~l~v~~~~~ 284 (637)
+.+|++||.+..+..+|..+|...-.- ..-.+++ .||+||++.+...|.+|++.++++. +.|+.+.+...-.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 468999999999999999999754211 1112222 4699999999999999999998864 7788887766655
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEe-ecCCCCcccEEEEEeCCHHHH
Q 006641 285 RAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVM-VDQHGFSKGSGFAAFSMPEEA 363 (637)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~-~d~~g~~~g~afV~f~~~~~A 363 (637)
+..+ +.++-|+|+|...-+|-|..+...||+|+.|... .|.. .-..-|+|.+.+.+
T Consensus 76 kkqr--------------------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e---tavvnvty~~~~~~ 132 (584)
T KOG2193|consen 76 KKQR--------------------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE---TAVVNVTYSAQQQH 132 (584)
T ss_pred HHHH--------------------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH---HHHHHHHHHHHHHH
Confidence 4332 2348899999999999999999999999999653 3321 12234789999999
Q ss_pred HHHHHHhCCceeCCEEEEEEEccch
Q 006641 364 TRALNEMNGKMIGRKPLYVAVAQRK 388 (637)
Q Consensus 364 ~~A~~~~~g~~~~g~~l~V~~a~~~ 388 (637)
..|+..++|..+....+.|.|--..
T Consensus 133 ~~ai~kl~g~Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 133 RQAIHKLNGPQLENQHLKVGYIPDE 157 (584)
T ss_pred HHHHHhhcchHhhhhhhhcccCchh
Confidence 9999999999999999999887654
No 157
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.94 E-value=2.4e-05 Score=61.51 Aligned_cols=69 Identities=25% Similarity=0.372 Sum_probs=47.5
Q ss_pred cccccCCCCCCCHHH----HHHHHhhcC-CeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 311 NLYLKNLDDSINDEK----LKELFSEFG-TITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 311 ~l~V~nL~~~~t~e~----L~~~F~~~G-~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
-|+|.|||.+.+... |+.++..+| .|.+|. .+.|+|.|.+.+.|.+|.+.|+|..+.|+.|.|++.
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 489999999888765 555666775 676651 467999999999999999999999999999999998
Q ss_pred cch
Q 006641 386 QRK 388 (637)
Q Consensus 386 ~~~ 388 (637)
...
T Consensus 75 ~~~ 77 (90)
T PF11608_consen 75 PKN 77 (90)
T ss_dssp --S
T ss_pred CCc
Confidence 544
No 158
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.61 E-value=0.00012 Score=62.26 Aligned_cols=59 Identities=25% Similarity=0.376 Sum_probs=40.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCC
Q 006641 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFM 92 (637)
Q Consensus 28 ~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~ 92 (637)
..|.|.+++.+++.++|++.|+.||.|..|.+.+... .|||.|.+.++|++|++.+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhc
Confidence 4689999999999999999999999999999888665 6999999999999999887543
No 159
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.59 E-value=0.00012 Score=71.99 Aligned_cols=78 Identities=22% Similarity=0.382 Sum_probs=64.2
Q ss_pred cEEEEcCCCCCCcHHHH------HHHHhccCCeEEEEEeeeCCCCCc-ccEE--EEEecChHHHHHHHHHcCCCccCCcc
Q 006641 28 VSLYVGDLEQNVNESQL------YDLFSQVAQVVSVRVCRDQSKRSS-LGYA--YVNYSNPQDAANAKEALNFMPINGKP 98 (637)
Q Consensus 28 ~~L~V~nLp~~~te~~L------~~~f~~~G~V~~i~v~~d~~t~~s-~g~a--~V~F~~~e~A~~Al~~ln~~~i~g~~ 98 (637)
.-+||-+||+.+..+++ .++|.+||.|..|.|-+....-.| .+.+ ||.|.+.|||.+||.+.++..+.||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 45799999999888773 689999999999988776532222 2334 99999999999999999999999999
Q ss_pred eeeeecc
Q 006641 99 IRIMYSH 105 (637)
Q Consensus 99 iri~~s~ 105 (637)
|+..|..
T Consensus 195 lkatYGT 201 (480)
T COG5175 195 LKATYGT 201 (480)
T ss_pred EeeecCc
Confidence 9998753
No 160
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.51 E-value=8e-05 Score=74.70 Aligned_cols=204 Identities=11% Similarity=0.140 Sum_probs=121.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEee---eCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeec
Q 006641 28 VSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCR---DQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYS 104 (637)
Q Consensus 28 ~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~---d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s 104 (637)
..|-|.||.+++|.++++.+|...|.|..+++.. |......+-.|||.|.+...+..|- .|.++.|-++.+.|...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 3899999999999999999999999999999976 3344445568999999999888777 67777766666544322
Q ss_pred cCCCccccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECCCCCceeEEEEEecCHHHHHHHHHHhcCCeeCCe
Q 006641 105 HRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDK 184 (637)
Q Consensus 105 ~~~~~~~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~~~ 184 (637)
. ..+-.+.. .|..+++-..+--....+|. -|.+.--. -+..++...|.-
T Consensus 87 ~-------------------~~~~p~r~--af~~l~~~navprll~pdg~-------Lp~~~~lt--~~nh~p~ailkt- 135 (479)
T KOG4676|consen 87 G-------------------DEVIPDRF--AFVELADQNAVPRLLPPDGV-------LPGDRPLT--KINHSPNAILKT- 135 (479)
T ss_pred C-------------------CCCCccHH--HHHhcCcccccccccCCCCc-------cCCCCccc--cccCCccceecC-
Confidence 1 11111111 45555433222211111221 11100000 000011111110
Q ss_pred eeEEeeeehhhhhhhccCCCccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCCCCCcceeeEeecCCHHHHHHHH
Q 006641 185 QVYVGLFVRRQERAQQNVSPKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAV 264 (637)
Q Consensus 185 ~l~V~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~~g~srg~~FV~F~~~e~A~~Av 264 (637)
+..+.... ......-..+++|.+|+..|...++-+.|..+|.|....+... ....+|-+.|....+...|+
T Consensus 136 -----P~Lp~~~~-A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask---~~s~~c~~sf~~qts~~hal 206 (479)
T KOG4676|consen 136 -----PELPPQAA-AKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASK---SRSSSCSHSFRKQTSSKHAL 206 (479)
T ss_pred -----CCCChHhh-hhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc---CCCcchhhhHhhhhhHHHHH
Confidence 11111000 0011112377999999999999999999999999876655433 23346779999988888888
Q ss_pred HHHcCCCCC
Q 006641 265 EKLNGTTNN 273 (637)
Q Consensus 265 ~~lng~~~~ 273 (637)
.. +|..+.
T Consensus 207 r~-~gre~k 214 (479)
T KOG4676|consen 207 RS-HGRERK 214 (479)
T ss_pred Hh-cchhhh
Confidence 54 455443
No 161
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=3.8e-05 Score=86.03 Aligned_cols=64 Identities=27% Similarity=0.370 Sum_probs=60.0
Q ss_pred hhhhhcccccchhhhccCCCcccchhhhcccCCHHHHHHhhCChHHHHHHHHHHH--HHHHHHHhc
Q 006641 560 DRTRMLGEQLYPLVENIEPVHASKVTGMLLEMDQTEVLHLIESPEALKTKVAEAM--AVLQEAAAR 623 (637)
Q Consensus 560 ~~~~~~g~~~~~~~~~~~~~~~~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~--~~~~~~~~~ 623 (637)
-.+|.|||+||+.++.+.|.+|.||||||||.....+|.+|..++-|+..|++|+ +++..|-++
T Consensus 2606 Ae~Q~la~l~wgqhe~~l~a~~s~~sGfL~dek~~g~llgi~ce~p~eafVdaa~ndd~i~~H~qe 2671 (3015)
T KOG0943|consen 2606 AERQALAELLWGQHEAMLPAFASKISGFLLDEKPAGLLLGIACEDPLEAFVDAAMNDDLIIAHGQE 2671 (3015)
T ss_pred hhhccchhhcchhhhhHHHHHHHhhhhhhhccchHHHHHHHhhcCcHHHHHHHhcchHHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999999999999 888877654
No 162
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.50 E-value=7.5e-05 Score=74.71 Aligned_cols=82 Identities=22% Similarity=0.406 Sum_probs=73.2
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCeEE--------EEEeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCE
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTITS--------CKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRK 378 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~--------~~i~~d-~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~ 378 (637)
...+|||.+|++.+++.+|.++|.++|.|.. |.|.+| +++.+||-|.|.|.+...|+.|+.-++++.|.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 4457999999999999999999999998843 456666 5889999999999999999999999999999999
Q ss_pred EEEEEEccchH
Q 006641 379 PLYVAVAQRKE 389 (637)
Q Consensus 379 ~l~V~~a~~~~ 389 (637)
.|+|.+|..+.
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99999998765
No 163
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.45 E-value=0.00021 Score=68.09 Aligned_cols=90 Identities=24% Similarity=0.352 Sum_probs=80.3
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEeccchhhhHHHHHHHHHHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHhhcCCeE
Q 006641 258 DAAAAAVEKLNGTTNNDKVWYVGRAQKRAEREADLRAKFEQERISRYEKLKGANLYLKNLDDSINDEKLKELFSEFGTIT 337 (637)
Q Consensus 258 e~A~~Av~~lng~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~ 337 (637)
.-|..|...|++....++.+.|.++.++ .|||.||...++-|.|.+.|+.||.|+
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~a-------------------------~l~V~nl~~~~sndll~~~f~~fg~~e 59 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMHA-------------------------ELYVVNLMQGASNDLLEQAFRRFGPIE 59 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeeccc-------------------------eEEEEecchhhhhHHHHHhhhhcCccc
Confidence 3466777788999999999999998762 399999999999999999999999999
Q ss_pred EEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 006641 338 SCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG 372 (637)
Q Consensus 338 ~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g 372 (637)
...+..|..++..+-++|.|...-.|.+|+...+-
T Consensus 60 ~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 60 RAVAKVDDRGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred hheeeecccccccccchhhhhcchhHHHHHHHhcc
Confidence 99999998899999999999999999999987743
No 164
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.45 E-value=0.00013 Score=73.02 Aligned_cols=83 Identities=23% Similarity=0.330 Sum_probs=75.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeE--------EEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCC
Q 006641 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVV--------SVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPING 96 (637)
Q Consensus 25 ~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~--------~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g 96 (637)
....+|||-.||..+++.+|+++|.++|.|. .|++-+|+.|.+++|-|.|.|.+.-.|..|++-++...+.|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 4467999999999999999999999999774 48889999999999999999999999999999999999999
Q ss_pred cceeeeeccCC
Q 006641 97 KPIRIMYSHRD 107 (637)
Q Consensus 97 ~~iri~~s~~~ 107 (637)
..|+|..+.+.
T Consensus 144 n~ikvs~a~~r 154 (351)
T KOG1995|consen 144 NTIKVSLAERR 154 (351)
T ss_pred CCchhhhhhhc
Confidence 99998776544
No 165
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.44 E-value=0.00029 Score=51.64 Aligned_cols=53 Identities=19% Similarity=0.414 Sum_probs=43.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHH
Q 006641 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86 (637)
Q Consensus 27 ~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al 86 (637)
++.|-|.+.+++..+. ++.+|..||+|..+.+.... -..||.|.+..+|++||
T Consensus 1 ~~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 3678899999877654 55599999999998886333 37999999999999986
No 166
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.38 E-value=0.00012 Score=69.60 Aligned_cols=73 Identities=21% Similarity=0.327 Sum_probs=63.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCC--------CCc----ccEEEEEecChHHHHHHHHHcCCCc
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSK--------RSS----LGYAYVNYSNPQDAANAKEALNFMP 93 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t--------~~s----~g~a~V~F~~~e~A~~Al~~ln~~~ 93 (637)
..-.||+++||+.+.-.-|+++|+.||.|-.|.+-+...+ +.+ .--+||+|.+...|.++.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999999877655 222 2238999999999999999999999
Q ss_pred cCCcc
Q 006641 94 INGKP 98 (637)
Q Consensus 94 i~g~~ 98 (637)
|.|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99987
No 167
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.31 E-value=0.00047 Score=65.79 Aligned_cols=89 Identities=22% Similarity=0.369 Sum_probs=80.0
Q ss_pred HHHHHHHHHcCCCccCCcceeeeeccCCCccccCCCccEEEeCCCccccHHHHHhHhhccCceeEEEEeECCCCCceeEE
Q 006641 80 QDAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYG 159 (637)
Q Consensus 80 e~A~~Al~~ln~~~i~g~~iri~~s~~~~~~~~~~~~~i~V~nLp~~it~~~L~~~F~~~G~I~s~~v~~~~~g~skg~a 159 (637)
.-|+.|..+|+....+|+.++|.|+.. ..|+|.||..-++++.|..-|+.||.|....++.|..++..+-+
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~---------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg 75 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH---------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREG 75 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc---------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccc
Confidence 346777778899999999999999854 24999999999999999999999999999999999899999999
Q ss_pred EEEecCHHHHHHHHHHhc
Q 006641 160 FVQFENEEAAQNAIKMLN 177 (637)
Q Consensus 160 fV~F~~~e~A~~Ai~~ln 177 (637)
+|.|...-.|.+|...++
T Consensus 76 ~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 76 IVEFAKKPNARKAARRCR 93 (275)
T ss_pred hhhhhcchhHHHHHHHhc
Confidence 999999999999998764
No 168
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.31 E-value=0.00041 Score=68.29 Aligned_cols=78 Identities=21% Similarity=0.405 Sum_probs=64.0
Q ss_pred ccccCCCCCCCHHH------HHHHHhhcCCeEEEEEeecC-C-CCccc-E-EEEEeCCHHHHHHHHHHhCCceeCCEEEE
Q 006641 312 LYLKNLDDSINDEK------LKELFSEFGTITSCKVMVDQ-H-GFSKG-S-GFAAFSMPEEATRALNEMNGKMIGRKPLY 381 (637)
Q Consensus 312 l~V~nL~~~~t~e~------L~~~F~~~G~i~~~~i~~d~-~-g~~~g-~-afV~f~~~~~A~~A~~~~~g~~~~g~~l~ 381 (637)
+||-+|+..+-+|+ =.++|.+||.|..|.|-+.. . ..-.+ + .||+|.+.|+|.++|.+.+|..++||.|+
T Consensus 117 vYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lk 196 (480)
T COG5175 117 VYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLK 196 (480)
T ss_pred eEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEe
Confidence 79999998887776 24789999999999887763 1 11122 2 39999999999999999999999999999
Q ss_pred EEEccchH
Q 006641 382 VAVAQRKE 389 (637)
Q Consensus 382 V~~a~~~~ 389 (637)
..+...|-
T Consensus 197 atYGTTKY 204 (480)
T COG5175 197 ATYGTTKY 204 (480)
T ss_pred eecCchHH
Confidence 99988763
No 169
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.00064 Score=71.52 Aligned_cols=78 Identities=21% Similarity=0.341 Sum_probs=64.1
Q ss_pred cccccccCCCCCCCH------HHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC-CEEEE
Q 006641 309 GANLYLKNLDDSIND------EKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIG-RKPLY 381 (637)
Q Consensus 309 ~~~l~V~nL~~~~t~------e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~-g~~l~ 381 (637)
..+|+|-|+|---.+ .-|.++|+++|+|..+.+..++.|.++||.|++|.+..+|..|++.+||+.++ .+...
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 356889999833222 34567899999999999999988889999999999999999999999999986 56677
Q ss_pred EEEcc
Q 006641 382 VAVAQ 386 (637)
Q Consensus 382 V~~a~ 386 (637)
|..-+
T Consensus 138 v~~f~ 142 (698)
T KOG2314|consen 138 VRLFK 142 (698)
T ss_pred eehhh
Confidence 75543
No 170
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.16 E-value=0.0014 Score=63.62 Aligned_cols=84 Identities=18% Similarity=0.286 Sum_probs=63.9
Q ss_pred hcccccccccCCC--CCCC---HHHHHHHHhhcCCeEEEEEeecCCCC--cccEEEEEeCCHHHHHHHHHHhCCceeCCE
Q 006641 306 KLKGANLYLKNLD--DSIN---DEKLKELFSEFGTITSCKVMVDQHGF--SKGSGFAAFSMPEEATRALNEMNGKMIGRK 378 (637)
Q Consensus 306 ~~~~~~l~V~nL~--~~~t---~e~L~~~F~~~G~i~~~~i~~d~~g~--~~g~afV~f~~~~~A~~A~~~~~g~~~~g~ 378 (637)
+.+...|.++|.- ..++ ++++++.+++||.|..|.|+.+++-- ---..||+|+..++|.+|+-.|||+.|+||
T Consensus 278 ~~ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr 357 (378)
T KOG1996|consen 278 KCPTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGR 357 (378)
T ss_pred hcchHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecce
Confidence 3344456666652 3333 46788999999999999999874211 123479999999999999999999999999
Q ss_pred EEEEEEccchH
Q 006641 379 PLYVAVAQRKE 389 (637)
Q Consensus 379 ~l~V~~a~~~~ 389 (637)
.+...|.+-..
T Consensus 358 ~v~A~Fyn~ek 368 (378)
T KOG1996|consen 358 VVSACFYNLEK 368 (378)
T ss_pred eeeheeccHHh
Confidence 99988876543
No 171
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.15 E-value=0.00062 Score=49.90 Aligned_cols=51 Identities=22% Similarity=0.323 Sum_probs=41.1
Q ss_pred cccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHH
Q 006641 311 NLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRAL 367 (637)
Q Consensus 311 ~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~ 367 (637)
.|-|.+.+.+.. +++..+|..||+|+.+.+.. ...+.+|+|.+..+|++|+
T Consensus 3 wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~-----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 3 WISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE-----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC-----CCcEEEEEECCHHHHHhhC
Confidence 477888886554 55666999999999988862 2568999999999999985
No 172
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.14 E-value=0.00059 Score=67.50 Aligned_cols=75 Identities=19% Similarity=0.324 Sum_probs=67.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccC--CeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceee
Q 006641 27 NVSLYVGDLEQNVNESQLYDLFSQVA--QVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRI 101 (637)
Q Consensus 27 ~~~L~V~nLp~~~te~~L~~~f~~~G--~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri 101 (637)
.-.+|||||-+.+|+++|.+.+...| .+..++++.++..+.|+|||+|...+....++.++-|-...|.|+.-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 46799999999999999999998877 7889999999999999999999999999999999999888888876544
No 173
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.12 E-value=0.00033 Score=71.36 Aligned_cols=67 Identities=22% Similarity=0.361 Sum_probs=56.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeC---CC---CC-------cccEEEEEecChHHHHHHHHHcCC
Q 006641 25 YGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQ---SK---RS-------SLGYAYVNYSNPQDAANAKEALNF 91 (637)
Q Consensus 25 ~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~---~t---~~-------s~g~a~V~F~~~e~A~~Al~~ln~ 91 (637)
-.+++|.+-|||.+-.-+.|.++|..+|.|++|+||... .. .. .+-+|+|+|...+.|.+|.+.||.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 368999999999999999999999999999999999871 11 11 135799999999999999988764
No 174
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.99 E-value=0.00032 Score=67.10 Aligned_cols=68 Identities=19% Similarity=0.333 Sum_probs=56.6
Q ss_pred HHHHHHHh-hcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccchHHH
Q 006641 324 EKLKELFS-EFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEER 391 (637)
Q Consensus 324 e~L~~~F~-~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~~~~~ 391 (637)
|+|...|+ +||+|++++|..+-...-+|-++|.|...++|.+|++.||+..++|++|+..+..--.-+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~r 151 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFR 151 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchh
Confidence 45555556 899999998887655556888999999999999999999999999999999888644333
No 175
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.76 E-value=0.00065 Score=65.07 Aligned_cols=63 Identities=25% Similarity=0.445 Sum_probs=53.3
Q ss_pred HHHHHHHh-ccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeecc
Q 006641 42 SQLYDLFS-QVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSH 105 (637)
Q Consensus 42 ~~L~~~f~-~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~ 105 (637)
++|+.-|+ +||+|.++.||.... ..-.|-+||.|...|+|++|++.||+.-|.|++|...++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 44555555 999999999988653 4556899999999999999999999999999999988774
No 176
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.68 E-value=0.0042 Score=55.08 Aligned_cols=76 Identities=25% Similarity=0.397 Sum_probs=54.4
Q ss_pred CCCCCcEEEEcCCCC------CCcH---HHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCc
Q 006641 23 SGYGNVSLYVGDLEQ------NVNE---SQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMP 93 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~------~~te---~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~ 93 (637)
-++++.||.|.=+.+ ...+ .+|.+.|+.||.|.-||+..+ .-||.|.+.+.|.+|+ .+++..
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~ 93 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQ 93 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcE
Confidence 356678888876662 2222 367889999999998887765 4899999999999999 899999
Q ss_pred cCCcceeeeeccCC
Q 006641 94 INGKPIRIMYSHRD 107 (637)
Q Consensus 94 i~g~~iri~~s~~~ 107 (637)
|+|+.++|..-.++
T Consensus 94 v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 94 VNGRTLKIRLKTPD 107 (146)
T ss_dssp ETTEEEEEEE----
T ss_pred ECCEEEEEEeCCcc
Confidence 99999999765433
No 177
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.65 E-value=0.0067 Score=50.73 Aligned_cols=76 Identities=21% Similarity=0.207 Sum_probs=51.8
Q ss_pred cccccccCCCCCCCHHHHHHHHhhcCCeEEEE-Eeec-------CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEE
Q 006641 309 GANLYLKNLDDSINDEKLKELFSEFGTITSCK-VMVD-------QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPL 380 (637)
Q Consensus 309 ~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~-i~~d-------~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l 380 (637)
.+.|.|-+.|.. ....+.++|++||+|.+.. +.++ +.-.......|+|+++.+|.+|+ ..||+.++|..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcEE
Confidence 456889999977 5667888999999998775 1111 00112567899999999999999 889999988654
Q ss_pred -EEEEcc
Q 006641 381 -YVAVAQ 386 (637)
Q Consensus 381 -~V~~a~ 386 (637)
-|.+.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 466664
No 178
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.59 E-value=0.0012 Score=67.55 Aligned_cols=80 Identities=24% Similarity=0.315 Sum_probs=62.6
Q ss_pred hcccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeec---C---CCCc--------ccEEEEEeCCHHHHHHHHHHhC
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD---Q---HGFS--------KGSGFAAFSMPEEATRALNEMN 371 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d---~---~g~~--------~g~afV~f~~~~~A~~A~~~~~ 371 (637)
..++.+|.+-|||.+-.-|.|.++|+.+|.|.+|+|+.- + .+.+ +-||||+|++.+.|.+|.+.|+
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 346788999999999999999999999999999999865 1 2222 4589999999999999998886
Q ss_pred CceeCCEEEEEEEc
Q 006641 372 GKMIGRKPLYVAVA 385 (637)
Q Consensus 372 g~~~~g~~l~V~~a 385 (637)
....--.-|+|.+-
T Consensus 308 ~e~~wr~glkvkLl 321 (484)
T KOG1855|consen 308 PEQNWRMGLKVKLL 321 (484)
T ss_pred hhhhhhhcchhhhh
Confidence 54443333444443
No 179
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.44 E-value=0.011 Score=52.46 Aligned_cols=58 Identities=17% Similarity=0.326 Sum_probs=46.0
Q ss_pred HHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccchHH
Q 006641 325 KLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKEE 390 (637)
Q Consensus 325 ~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~~~~ 390 (637)
+|-+.|+.||+|.=+++..+ .-+|+|.+-+.|.+|+ .++|..++|+.|+|++..+.-.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE------
T ss_pred HHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCccHH
Confidence 67778999999998887754 3799999999999999 9999999999999999887643
No 180
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.44 E-value=0.011 Score=49.47 Aligned_cols=77 Identities=18% Similarity=0.171 Sum_probs=51.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEe-eeCC------CCCcccEEEEEecChHHHHHHHHHcCCCccCCcc
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVC-RDQS------KRSSLGYAYVNYSNPQDAANAKEALNFMPINGKP 98 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~-~d~~------t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ 98 (637)
.+..|.|-+-|++ ....|.+.|++||.|++..-+ ++.. .........|.|.+..+|.+|| ..|+..|.|.-
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcE
Confidence 4678999999987 566788889999999887611 1000 0011147999999999999999 67999998754
Q ss_pred -eeeeec
Q 006641 99 -IRIMYS 104 (637)
Q Consensus 99 -iri~~s 104 (637)
+-|.|+
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 445555
No 181
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.25 E-value=0.0026 Score=67.54 Aligned_cols=82 Identities=23% Similarity=0.245 Sum_probs=66.5
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHh-ccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCcc---CCc
Q 006641 22 PSGYGNVSLYVGDLEQNVNESQLYDLFS-QVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPI---NGK 97 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~~te~~L~~~f~-~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i---~g~ 97 (637)
+....+..|||.||--..|.-.|++++. .+|.|.+.+|-+-+. .|||.|.+.++|.....+|++..+ +.+
T Consensus 439 sR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKS------hCyV~yss~eEA~atr~AlhnV~WP~sNPK 512 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKS------HCYVSYSSVEEAAATREALHNVQWPPSNPK 512 (718)
T ss_pred CCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhc------ceeEecccHHHHHHHHHHHhccccCCCCCc
Confidence 3556789999999999999999999996 667888886644433 799999999999999999998655 457
Q ss_pred ceeeeeccCCCc
Q 006641 98 PIRIMYSHRDPS 109 (637)
Q Consensus 98 ~iri~~s~~~~~ 109 (637)
.|.+.|...+..
T Consensus 513 ~L~adf~~~del 524 (718)
T KOG2416|consen 513 HLIADFVRADEL 524 (718)
T ss_pred eeEeeecchhHH
Confidence 777777665543
No 182
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.24 E-value=0.012 Score=62.18 Aligned_cols=78 Identities=28% Similarity=0.460 Sum_probs=63.6
Q ss_pred CccEEEeCCCccc------cHHHHHhHhhccCceeEEEEeECCCCCceeEEEEEecCHHHHHHHHHHhcCCeeC-CeeeE
Q 006641 115 YGNVFIKNLDTSI------DNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLIN-DKQVY 187 (637)
Q Consensus 115 ~~~i~V~nLp~~i------t~~~L~~~F~~~G~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~-~~~l~ 187 (637)
...|+|.|+|.-- -..-|..+|+.+|.|....+..++.|.++||.|++|.+..+|..|++.+||+.+. ++++.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 3458899988532 2335678999999999999988998889999999999999999999999998875 45666
Q ss_pred Eeeee
Q 006641 188 VGLFV 192 (637)
Q Consensus 188 V~~~~ 192 (637)
|..+.
T Consensus 138 v~~f~ 142 (698)
T KOG2314|consen 138 VRLFK 142 (698)
T ss_pred eehhh
Confidence 65554
No 183
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.24 E-value=0.0022 Score=61.32 Aligned_cols=71 Identities=23% Similarity=0.395 Sum_probs=60.1
Q ss_pred cccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCC---------CCccc----EEEEEeCCHHHHHHHHHHhCCcee
Q 006641 309 GANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQH---------GFSKG----SGFAAFSMPEEATRALNEMNGKMI 375 (637)
Q Consensus 309 ~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~---------g~~~g----~afV~f~~~~~A~~A~~~~~g~~~ 375 (637)
.-.||+.+||...+...||++|+.||.|-+|.+-.... |.++. -|.|+|.+...|.+....||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 34699999999999999999999999999998876531 22222 268999999999999999999999
Q ss_pred CCEE
Q 006641 376 GRKP 379 (637)
Q Consensus 376 ~g~~ 379 (637)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9864
No 184
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.15 E-value=0.018 Score=43.23 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=45.4
Q ss_pred ccccccCCCCCCCHHHHHHHHhhc---CCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHh
Q 006641 310 ANLYLKNLDDSINDEKLKELFSEF---GTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEM 370 (637)
Q Consensus 310 ~~l~V~nL~~~~t~e~L~~~F~~~---G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~ 370 (637)
..|+|++++ +.+-++|+.+|..| ....+|+++.|.+ |=|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDtS------cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDTS------CNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCCc------EEEEECCHHHHHHHHHcC
Confidence 359999995 68889999999999 2467899998843 889999999999999764
No 185
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.10 E-value=0.024 Score=49.49 Aligned_cols=75 Identities=21% Similarity=0.253 Sum_probs=60.5
Q ss_pred CCCCcEEEEcCCCCCCcH-HHH---HHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcce
Q 006641 24 GYGNVSLYVGDLEQNVNE-SQL---YDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPI 99 (637)
Q Consensus 24 ~~~~~~L~V~nLp~~~te-~~L---~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~i 99 (637)
.++..+|.|+=|..++.. ++| ...++.||+|.+|..|... -|.|.|.+..+|-+|+.++.. ..-|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq-------savVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ-------SAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc-------eEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 346789999988877655 444 4556899999999988754 399999999999999988876 6778889
Q ss_pred eeeeccC
Q 006641 100 RIMYSHR 106 (637)
Q Consensus 100 ri~~s~~ 106 (637)
++.|-++
T Consensus 155 qCsWqqr 161 (166)
T PF15023_consen 155 QCSWQQR 161 (166)
T ss_pred Eeecccc
Confidence 9998765
No 186
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.89 E-value=0.039 Score=41.49 Aligned_cols=53 Identities=19% Similarity=0.291 Sum_probs=44.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcc----CCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHc
Q 006641 28 VSLYVGDLEQNVNESQLYDLFSQV----AQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL 89 (637)
Q Consensus 28 ~~L~V~nLp~~~te~~L~~~f~~~----G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~l 89 (637)
.+|+|++++ +++.++++.+|..| ++ ..|.=+.|.. |=|.|.+.+.|.+||..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdDtS-------cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDDTS-------CNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecCCc-------EEEEECCHHHHHHHHHcC
Confidence 379999996 59999999999998 54 3777777765 779999999999999764
No 187
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.58 E-value=0.0096 Score=63.39 Aligned_cols=83 Identities=23% Similarity=0.222 Sum_probs=67.7
Q ss_pred hcccccccccCCCCCCCHHHHHHHHh-hcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcee---CCEEEE
Q 006641 306 KLKGANLYLKNLDDSINDEKLKELFS-EFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMI---GRKPLY 381 (637)
Q Consensus 306 ~~~~~~l~V~nL~~~~t~e~L~~~F~-~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~---~g~~l~ 381 (637)
+..+..|||.||-.-+|.-+|+.++. ..|.|++. +|.. -|..|||.|.+.++|...+.+|||... +.|.|.
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH-HHHH----hhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 34566799999999999999999999 45677776 4422 256799999999999999999999765 789999
Q ss_pred EEEccchHHHHH
Q 006641 382 VAVAQRKEERKA 393 (637)
Q Consensus 382 V~~a~~~~~~~~ 393 (637)
+.|....+..+.
T Consensus 516 adf~~~deld~h 527 (718)
T KOG2416|consen 516 ADFVRADELDKH 527 (718)
T ss_pred eeecchhHHHHH
Confidence 999987765543
No 188
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.55 E-value=0.047 Score=43.31 Aligned_cols=56 Identities=23% Similarity=0.317 Sum_probs=43.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCC
Q 006641 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNF 91 (637)
Q Consensus 27 ~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~ 91 (637)
+...+|+ .|..+...||.++|+.||.| .|.-+.|. -|||...+.+.|..++..++.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 4566777 99999999999999999998 66666664 499999999999999988764
No 189
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=95.24 E-value=0.087 Score=58.18 Aligned_cols=18 Identities=11% Similarity=0.350 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHhccCCe
Q 006641 37 QNVNESQLYDLFSQVAQV 54 (637)
Q Consensus 37 ~~~te~~L~~~f~~~G~V 54 (637)
.++++.++.++|...|.=
T Consensus 81 ~~ls~~e~~~~F~~~~~d 98 (1102)
T KOG1924|consen 81 FSLSSNEVLELFELMGED 98 (1102)
T ss_pred hhccHHHHHHHHHHHhhh
Confidence 457777888888777653
No 190
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.24 E-value=0.045 Score=53.41 Aligned_cols=82 Identities=15% Similarity=0.159 Sum_probs=62.5
Q ss_pred CCCcEEEEcCC--CCCCcH---HHHHHHHhccCCeEEEEEeeeCCCCCc-ccEEEEEecChHHHHHHHHHcCCCccCCcc
Q 006641 25 YGNVSLYVGDL--EQNVNE---SQLYDLFSQVAQVVSVRVCRDQSKRSS-LGYAYVNYSNPQDAANAKEALNFMPINGKP 98 (637)
Q Consensus 25 ~~~~~L~V~nL--p~~~te---~~L~~~f~~~G~V~~i~v~~d~~t~~s-~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ 98 (637)
..++.|.++|. +-.+++ .++.+-+.+||.|..|.|..+...... .--.||+|...++|.+|+-.||+..|.|+.
T Consensus 279 ~ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~ 358 (378)
T KOG1996|consen 279 CPTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRV 358 (378)
T ss_pred cchHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceeccee
Confidence 34556777666 333444 567888999999999998876432211 234899999999999999999999999999
Q ss_pred eeeeeccC
Q 006641 99 IRIMYSHR 106 (637)
Q Consensus 99 iri~~s~~ 106 (637)
++..|...
T Consensus 359 v~A~Fyn~ 366 (378)
T KOG1996|consen 359 VSACFYNL 366 (378)
T ss_pred eeheeccH
Confidence 99987643
No 191
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=94.95 E-value=0.16 Score=56.24 Aligned_cols=13 Identities=15% Similarity=0.240 Sum_probs=7.5
Q ss_pred cCHHHHHHHHHHh
Q 006641 164 ENEEAAQNAIKML 176 (637)
Q Consensus 164 ~~~e~A~~Ai~~l 176 (637)
....++.+|++.+
T Consensus 207 k~~~eiIrClka~ 219 (1102)
T KOG1924|consen 207 KNLQEIIRCLKAF 219 (1102)
T ss_pred HHHHHHHHHHHHH
Confidence 3455666666654
No 192
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.94 E-value=0.026 Score=52.85 Aligned_cols=71 Identities=14% Similarity=0.267 Sum_probs=45.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhc-cCCe---EEEEEeeeCC-CCC-cccEEEEEecChHHHHHHHHHcCCCccCC
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQ-VAQV---VSVRVCRDQS-KRS-SLGYAYVNYSNPQDAANAKEALNFMPING 96 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~-~G~V---~~i~v~~d~~-t~~-s~g~a~V~F~~~e~A~~Al~~ln~~~i~g 96 (637)
....|.|++|||.+||+++.+.++. ++.- ..+.-..+.. ... ...-|||+|.+.+++....+.+++..|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 3469999999999999999997766 6644 2333112221 111 23459999999999999999999876644
No 193
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=94.81 E-value=0.13 Score=58.02 Aligned_cols=36 Identities=11% Similarity=0.128 Sum_probs=14.8
Q ss_pred hccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHH
Q 006641 49 SQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAK 86 (637)
Q Consensus 49 ~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al 86 (637)
+..|.+.-..|.++..+.+. |.-+-|.+.+--.+++
T Consensus 452 e~~g~tvgy~vRf~Sa~prp--yg~i~fctvgvllr~~ 487 (1282)
T KOG0921|consen 452 EEVGETCGYNVRFDSATPRP--YGSIMFCTVGVLLRMM 487 (1282)
T ss_pred Hhhccccccccccccccccc--ccceeeeccchhhhhh
Confidence 33343333333444433332 4444455544444444
No 194
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.64 E-value=0.12 Score=41.14 Aligned_cols=59 Identities=22% Similarity=0.406 Sum_probs=44.1
Q ss_pred CccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCCCCCcceeeEeecCCHHHHHHHHHHHcC
Q 006641 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNG 269 (637)
Q Consensus 204 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~~g~srg~~FV~F~~~e~A~~Av~~lng 269 (637)
+....||--.+|.+|...||.++|+.||.| .|..+.|. .|||...+.+.|..++..++.
T Consensus 6 P~RdHVFhltFPkeWK~~DI~qlFspfG~I-~VsWi~dT------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 6 PSRDHVFHLTFPKEWKTSDIYQLFSPFGQI-YVSWINDT------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp -SGCCEEEEE--TT--HHHHHHHCCCCCCE-EEEEECTT------EEEEEECCCHHHHHHHHHHTT
T ss_pred CCcceEEEEeCchHhhhhhHHHHhccCCcE-EEEEEcCC------cEEEEeecHHHHHHHHHHhcc
Confidence 445567766799999999999999999998 45555653 699999999999999987753
No 195
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.48 E-value=0.51 Score=40.31 Aligned_cols=75 Identities=13% Similarity=0.211 Sum_probs=52.2
Q ss_pred cEEEEcCCCCCCcH-HHHHHHHhccC-CeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccC---Ccceeee
Q 006641 28 VSLYVGDLEQNVNE-SQLYDLFSQVA-QVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPIN---GKPIRIM 102 (637)
Q Consensus 28 ~~L~V~nLp~~~te-~~L~~~f~~~G-~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~---g~~iri~ 102 (637)
..|.+--.|+.++. ++|..+.+.+- .|..++|+||....+ -.+.+.|.+.++|....+.+|+..+. ...|+|.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnr--ymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~Chvv 90 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNR--YMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVV 90 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCce--EEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEE
Confidence 44444455555555 55655555554 788999999987443 35899999999999999999987664 3556665
Q ss_pred ec
Q 006641 103 YS 104 (637)
Q Consensus 103 ~s 104 (637)
|-
T Consensus 91 fV 92 (110)
T PF07576_consen 91 FV 92 (110)
T ss_pred EE
Confidence 43
No 196
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.17 E-value=0.12 Score=45.20 Aligned_cols=73 Identities=15% Similarity=0.173 Sum_probs=53.4
Q ss_pred cccccccccCCCCCC----CHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 006641 307 LKGANLYLKNLDDSI----NDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYV 382 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~----t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V 382 (637)
++-.+|.|+=|..++ +-..+-..++.||.|.+|...- +--|.|.|.|..+|-+|+.++.. ..-|..+..
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 345567776554433 3344555678899999998873 44599999999999999999875 566777887
Q ss_pred EEcc
Q 006641 383 AVAQ 386 (637)
Q Consensus 383 ~~a~ 386 (637)
+|-+
T Consensus 157 sWqq 160 (166)
T PF15023_consen 157 SWQQ 160 (166)
T ss_pred eccc
Confidence 7754
No 197
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.96 E-value=0.14 Score=48.14 Aligned_cols=62 Identities=27% Similarity=0.288 Sum_probs=47.2
Q ss_pred CHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhC--CceeCCEEEEEEEccch
Q 006641 322 NDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMN--GKMIGRKPLYVAVAQRK 388 (637)
Q Consensus 322 t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~--g~~~~g~~l~V~~a~~~ 388 (637)
..+.|+++|..|+.+..+.+++. -+-..|.|.+.++|.+|...++ +..+.|+.|+|.+++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45889999999999998888754 4558999999999999999999 99999999999998543
No 198
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.70 E-value=0.1 Score=55.42 Aligned_cols=72 Identities=19% Similarity=0.354 Sum_probs=58.5
Q ss_pred ccccccccCCCCCCCHHHHHHHHhh--cCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCC--ceeCCEEEEEE
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSE--FGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNG--KMIGRKPLYVA 383 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~--~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g--~~~~g~~l~V~ 383 (637)
+.|.|.++-|++.+-.|+++.+|+. +-.+.+|.+-.+.+ .||+|++..+|+.|.+.|.. ++|-||+|...
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n------WyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN------WYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc------eEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 4567899999999999999999975 56889998876532 79999999999999988864 56778777654
Q ss_pred Ec
Q 006641 384 VA 385 (637)
Q Consensus 384 ~a 385 (637)
+.
T Consensus 248 IK 249 (684)
T KOG2591|consen 248 IK 249 (684)
T ss_pred hh
Confidence 43
No 199
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.41 E-value=0.039 Score=55.35 Aligned_cols=79 Identities=22% Similarity=0.339 Sum_probs=63.2
Q ss_pred cccccCCCCCCCHHHHH---HHHhhcCCeEEEEEeecCC--CCcc--cEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEE
Q 006641 311 NLYLKNLDDSINDEKLK---ELFSEFGTITSCKVMVDQH--GFSK--GSGFAAFSMPEEATRALNEMNGKMIGRKPLYVA 383 (637)
Q Consensus 311 ~l~V~nL~~~~t~e~L~---~~F~~~G~i~~~~i~~d~~--g~~~--g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~ 383 (637)
-+||-+|+....++.+. ++|.+||.|.+|.+..+.. ...- .-++|+|...++|..||...+|...+|+.|+..
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~ 158 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKAS 158 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHh
Confidence 47888898777666554 4789999999999988752 1111 237999999999999999999999999998888
Q ss_pred EccchH
Q 006641 384 VAQRKE 389 (637)
Q Consensus 384 ~a~~~~ 389 (637)
+...+-
T Consensus 159 ~gttky 164 (327)
T KOG2068|consen 159 LGTTKY 164 (327)
T ss_pred hCCCcc
Confidence 887764
No 200
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.35 E-value=0.05 Score=56.69 Aligned_cols=71 Identities=18% Similarity=0.224 Sum_probs=58.4
Q ss_pred cccccCCCCCC-CHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccc
Q 006641 311 NLYLKNLDDSI-NDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQR 387 (637)
Q Consensus 311 ~l~V~nL~~~~-t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~ 387 (637)
.|-+.-.+... |.++|..+|.+||+|+.|.|-.. .-.|.|+|.+..+|-+|. ..++-.|+++.|+|.|-++
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchh-ccccceecCceeEEEEecC
Confidence 34455455443 56899999999999999988544 345999999999998888 7889999999999999886
No 201
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.33 E-value=0.044 Score=57.06 Aligned_cols=77 Identities=18% Similarity=0.261 Sum_probs=64.0
Q ss_pred CCCcEEEEcCCCCCCcH-HHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeee
Q 006641 25 YGNVSLYVGDLEQNVNE-SQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMY 103 (637)
Q Consensus 25 ~~~~~L~V~nLp~~~te-~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~ 103 (637)
...+.|-+.-.|..++. ++|..+|.+||+|..|.|--... .|.|.|.+..+|-+|- ......|+|+.|++.|
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFW 442 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchh-ccccceecCceeEEEE
Confidence 35677888888887655 88999999999999999865522 5999999999997777 5788999999999999
Q ss_pred ccCCC
Q 006641 104 SHRDP 108 (637)
Q Consensus 104 s~~~~ 108 (637)
-+..+
T Consensus 443 hnps~ 447 (526)
T KOG2135|consen 443 HNPSP 447 (526)
T ss_pred ecCCc
Confidence 87655
No 202
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.30 E-value=0.032 Score=55.98 Aligned_cols=79 Identities=18% Similarity=0.319 Sum_probs=62.2
Q ss_pred CcEEEEcCCCCCCcHHHH---HHHHhccCCeEEEEEeeeCCC-CCc--ccEEEEEecChHHHHHHHHHcCCCccCCccee
Q 006641 27 NVSLYVGDLEQNVNESQL---YDLFSQVAQVVSVRVCRDQSK-RSS--LGYAYVNYSNPQDAANAKEALNFMPINGKPIR 100 (637)
Q Consensus 27 ~~~L~V~nLp~~~te~~L---~~~f~~~G~V~~i~v~~d~~t-~~s--~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ir 100 (637)
..-+||-+|+..+..+.+ .+.|.+||.|.+|.+.++... ..+ -.-+||.|...+||.+||...++....|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 356788999988776666 458889999999999987731 111 12389999999999999999999999999987
Q ss_pred eeecc
Q 006641 101 IMYSH 105 (637)
Q Consensus 101 i~~s~ 105 (637)
+.+..
T Consensus 157 a~~gt 161 (327)
T KOG2068|consen 157 ASLGT 161 (327)
T ss_pred HhhCC
Confidence 77653
No 203
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=93.24 E-value=2 Score=42.52 Aligned_cols=156 Identities=11% Similarity=0.181 Sum_probs=98.5
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCC-------CCcccEEEEEecChHHHHH----HHHHc
Q 006641 21 VPSGYGNVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSK-------RSSLGYAYVNYSNPQDAAN----AKEAL 89 (637)
Q Consensus 21 ~~~~~~~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t-------~~s~g~a~V~F~~~e~A~~----Al~~l 89 (637)
+...+-.|+|.+.|+..+++-..+...|-.||+|++|.++.+..+ .+......+-|-+.+.+-. .+.+|
T Consensus 9 GdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrL 88 (309)
T PF10567_consen 9 GDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRL 88 (309)
T ss_pred CCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHH
Confidence 445567899999999999999999999999999999999988711 1112357888998877653 33333
Q ss_pred C--CCccCCcceeeeeccC-----C-----C--------------ccccCCCccEEEeCCCccccHHH-HHhHh---hcc
Q 006641 90 N--FMPINGKPIRIMYSHR-----D-----P--------------SIRKSGYGNVFIKNLDTSIDNKA-LCDTF---AAF 139 (637)
Q Consensus 90 n--~~~i~g~~iri~~s~~-----~-----~--------------~~~~~~~~~i~V~nLp~~it~~~-L~~~F---~~~ 139 (637)
+ ...++-..+.+.|-.- + . ...+..-+.|.|.=- ..+++++ +.+.+ ..-
T Consensus 89 sEfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~ 167 (309)
T PF10567_consen 89 SEFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNS 167 (309)
T ss_pred HHHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccC
Confidence 3 2345556666655321 0 0 001111233555422 3443333 33322 222
Q ss_pred C----ceeEEEEeECC---CCCceeEEEEEecCHHHHHHHHHHhc
Q 006641 140 G----TVLSCKVAIDS---NGQSKGYGFVQFENEEAAQNAIKMLN 177 (637)
Q Consensus 140 G----~I~s~~v~~~~---~g~skg~afV~F~~~e~A~~Ai~~ln 177 (637)
+ .++++.++... ..-.+.||.++|-+...|...++.+.
T Consensus 168 ~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 168 NNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred CCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 3 25667776543 23367799999999999999998775
No 204
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.06 E-value=0.19 Score=47.18 Aligned_cols=63 Identities=25% Similarity=0.405 Sum_probs=47.1
Q ss_pred cHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcC--CCccCCcceeeeeccCCC
Q 006641 40 NESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALN--FMPINGKPIRIMYSHRDP 108 (637)
Q Consensus 40 te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln--~~~i~g~~iri~~s~~~~ 108 (637)
..+.|+++|..++.+.++.+++.-+ -..|.|.+.++|.+|...|+ +..|.|+.+++.|++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFr------Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFR------RIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTT------EEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCC------EEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 3478999999999888888777643 58999999999999999999 899999999999985443
No 205
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.26 E-value=0.083 Score=58.84 Aligned_cols=75 Identities=25% Similarity=0.283 Sum_probs=66.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCcc--CCcceeeeec
Q 006641 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPI--NGKPIRIMYS 104 (637)
Q Consensus 27 ~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i--~g~~iri~~s 104 (637)
..+.++.|.+-..+..-|..+|+.||.|.++|..||-. .|.|.|.+.+.|..|+++|.+.++ .|-+.+|+++
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 45677888888899999999999999999999998865 799999999999999999998766 5889999998
Q ss_pred cCC
Q 006641 105 HRD 107 (637)
Q Consensus 105 ~~~ 107 (637)
+.-
T Consensus 372 k~~ 374 (1007)
T KOG4574|consen 372 KTL 374 (1007)
T ss_pred ccc
Confidence 753
No 206
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=91.99 E-value=0.3 Score=52.06 Aligned_cols=71 Identities=18% Similarity=0.322 Sum_probs=57.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHh--ccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCC--CccCCcc
Q 006641 23 SGYGNVSLYVGDLEQNVNESQLYDLFS--QVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNF--MPINGKP 98 (637)
Q Consensus 23 ~~~~~~~L~V~nLp~~~te~~L~~~f~--~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~--~~i~g~~ 98 (637)
+....+.|.|+.||..+.+|+++-+|+ .|-.+.+|..-.... =||.|++.+||..|.+.|.. ..|-||+
T Consensus 171 p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 171 PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 445568889999999999999999995 466788887755543 79999999999999988864 4677888
Q ss_pred ee
Q 006641 99 IR 100 (637)
Q Consensus 99 ir 100 (637)
|.
T Consensus 244 Im 245 (684)
T KOG2591|consen 244 IM 245 (684)
T ss_pred hh
Confidence 73
No 207
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.78 E-value=0.97 Score=34.64 Aligned_cols=56 Identities=16% Similarity=0.288 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEE
Q 006641 319 DSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYV 382 (637)
Q Consensus 319 ~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V 382 (637)
..++-++++..+..|+ -.+|..|++| =||.|.+.++|+++....+|+.+.+-.|.+
T Consensus 10 ~~~~v~d~K~~Lr~y~---~~~I~~d~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYR---WDRIRDDRTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCC---cceEEecCCE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4578999999999994 3345666654 489999999999999999999988776654
No 208
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.59 E-value=0.89 Score=47.51 Aligned_cols=76 Identities=16% Similarity=0.270 Sum_probs=63.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcc-CCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccC---Ccceeee
Q 006641 27 NVSLYVGDLEQNVNESQLYDLFSQV-AQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPIN---GKPIRIM 102 (637)
Q Consensus 27 ~~~L~V~nLp~~~te~~L~~~f~~~-G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~---g~~iri~ 102 (637)
++.|.|--+|..+|-.||..++..+ -.|..|+++||....+- .+.|.|.+.+||....+.+|+..|. -..|++.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnry--mvLIkFr~q~da~~Fy~efNGk~Fn~le~e~Chll 151 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRY--MVLIKFRDQADADTFYEEFNGKQFNSLEPEVCHLL 151 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceE--EEEEEeccchhHHHHHHHcCCCcCCCCCccceeEE
Confidence 8899999999999999999998554 48999999998765432 5899999999999999999987665 3455555
Q ss_pred ec
Q 006641 103 YS 104 (637)
Q Consensus 103 ~s 104 (637)
|.
T Consensus 152 ~V 153 (493)
T KOG0804|consen 152 YV 153 (493)
T ss_pred EE
Confidence 54
No 209
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.42 E-value=0.2 Score=55.98 Aligned_cols=74 Identities=26% Similarity=0.354 Sum_probs=65.5
Q ss_pred cccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcee--CCEEEEEEEccch
Q 006641 311 NLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMI--GRKPLYVAVAQRK 388 (637)
Q Consensus 311 ~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~--~g~~l~V~~a~~~ 388 (637)
+.++.|..-..+-..|-.+|+.||.|.++..++| -..+.|.|.+.+.|..|+++++|+.+ -|-+.+|.+|+.-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc-----ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3677888888999999999999999999999887 34699999999999999999999886 5889999999865
Q ss_pred H
Q 006641 389 E 389 (637)
Q Consensus 389 ~ 389 (637)
+
T Consensus 375 ~ 375 (1007)
T KOG4574|consen 375 P 375 (1007)
T ss_pred c
Confidence 4
No 210
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=89.86 E-value=6.4 Score=39.18 Aligned_cols=182 Identities=16% Similarity=0.218 Sum_probs=108.6
Q ss_pred cceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCC--------CCCcceeeEeecCCHHHHHHHH----HHHcC--CC
Q 006641 206 FTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDS--------DGKSRCFGFVNFQSPDAAAAAV----EKLNG--TT 271 (637)
Q Consensus 206 ~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~--------~g~srg~~FV~F~~~e~A~~Av----~~lng--~~ 271 (637)
.+.|.+.|+..+++-..+...|-+||+|+++.++.+. +.+......+.|-+.+.+.... +.++. ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 4668889999999999999999999999999999876 2334567888998888775543 22221 22
Q ss_pred CCCcEEEEeccchhh---hH--H--HHHHHH-HHHhhhhhhhhcccccccccCCCCCCCHHHHHHHHh--------hcCC
Q 006641 272 NNDKVWYVGRAQKRA---ER--E--ADLRAK-FEQERISRYEKLKGANLYLKNLDDSINDEKLKELFS--------EFGT 335 (637)
Q Consensus 272 ~~g~~l~v~~~~~~~---~~--~--~~~~~~-~~~~~~~~~~~~~~~~l~V~nL~~~~t~e~L~~~F~--------~~G~ 335 (637)
+....|.+.+..-+- .. . ...... ...-..+-......+.|.|.--....+++-+.+.+. +| .
T Consensus 95 L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~~~~~~~dl~~~kL~fL~~~~n~RY-V 173 (309)
T PF10567_consen 95 LKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFKDPVDKDDLIEKKLPFLKNSNNKRY-V 173 (309)
T ss_pred cCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEecCccchhHHHHHhhhhhccCCCceE-E
Confidence 444555554443100 00 0 000000 000111112233445566654433323333333331 23 6
Q ss_pred eEEEEEeecC---CCCcccEEEEEeCCHHHHHHHHHHhC--CceeC-CEEEEEEEccch
Q 006641 336 ITSCKVMVDQ---HGFSKGSGFAAFSMPEEATRALNEMN--GKMIG-RKPLYVAVAQRK 388 (637)
Q Consensus 336 i~~~~i~~d~---~g~~~g~afV~f~~~~~A~~A~~~~~--g~~~~-g~~l~V~~a~~~ 388 (637)
|++|.++.-. +..++.||.++|-+..-|...+.-+. +...+ .+...|.++...
T Consensus 174 lEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs~~~~~ 232 (309)
T PF10567_consen 174 LESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVSVQPHA 232 (309)
T ss_pred EEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEeccCcc
Confidence 7888887652 45578899999999999999988775 33333 566777776644
No 211
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.12 E-value=1 Score=44.58 Aligned_cols=64 Identities=22% Similarity=0.232 Sum_probs=50.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcc
Q 006641 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKP 98 (637)
Q Consensus 27 ~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ 98 (637)
+..|-|-+.|+. .-..|..+|++||.|++....+.. .+-+|.|.+..+|.+|| ..|+..|.|..
T Consensus 197 D~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~~ng------NwMhirYssr~~A~KAL-skng~ii~g~v 260 (350)
T KOG4285|consen 197 DTWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTPSNG------NWMHIRYSSRTHAQKAL-SKNGTIIDGDV 260 (350)
T ss_pred cceEEEeccCcc-chhHHHHHHHhhCeeeeeecCCCC------ceEEEEecchhHHHHhh-hhcCeeeccce
Confidence 568888899874 556788899999999876554222 38999999999999999 55777777643
No 212
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=88.86 E-value=0.84 Score=42.77 Aligned_cols=68 Identities=10% Similarity=0.189 Sum_probs=45.4
Q ss_pred CccEEEeCCCccccHHHHHhHhhc-cCce---eEEEEeECC---CCCceeEEEEEecCHHHHHHHHHHhcCCeeC
Q 006641 115 YGNVFIKNLDTSIDNKALCDTFAA-FGTV---LSCKVAIDS---NGQSKGYGFVQFENEEAAQNAIKMLNGMLIN 182 (637)
Q Consensus 115 ~~~i~V~nLp~~it~~~L~~~F~~-~G~I---~s~~v~~~~---~g~skg~afV~F~~~e~A~~Ai~~lng~~i~ 182 (637)
...|.|++||+.++++++++.++. ++.. ..+.-.... .-..-.-|||.|.+.+++....+.++|..+-
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 347999999999999999998887 6665 223211221 1122345999999999999999999987653
No 213
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=88.06 E-value=1.5 Score=34.53 Aligned_cols=59 Identities=22% Similarity=0.286 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHhhcC-----CeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 319 DSINDEKLKELFSEFG-----TITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 319 ~~~t~e~L~~~F~~~G-----~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
+.++..+|..++...+ .|-.|+|.. .|+||+-. .+.|..++..|++..+.|++|.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~-------~~S~vev~-~~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD-------NFSFVEVP-EEVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S-------S-EEEEE--TT-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee-------eEEEEEEC-HHHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 5678888888888764 455677763 47999986 56899999999999999999999875
No 214
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.37 E-value=2.2 Score=46.06 Aligned_cols=86 Identities=17% Similarity=0.261 Sum_probs=64.6
Q ss_pred CCCCCCcEEEEcCCCCC-CcHHHHHHHHhcc----CCeEEEEEeeeCCC----------CC-------------------
Q 006641 22 PSGYGNVSLYVGDLEQN-VNESQLYDLFSQV----AQVVSVRVCRDQSK----------RS------------------- 67 (637)
Q Consensus 22 ~~~~~~~~L~V~nLp~~-~te~~L~~~f~~~----G~V~~i~v~~d~~t----------~~------------------- 67 (637)
.....+++|-|-|++++ +.-.+|+-+|+.| |.|++|.||..... +.
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~e 248 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDE 248 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchh
Confidence 34567899999999987 7889999999877 58999999853211 11
Q ss_pred ------------------cccEEEEEecChHHHHHHHHHcCCCccC--CcceeeeeccCC
Q 006641 68 ------------------SLGYAYVNYSNPQDAANAKEALNFMPIN--GKPIRIMYSHRD 107 (637)
Q Consensus 68 ------------------s~g~a~V~F~~~e~A~~Al~~ln~~~i~--g~~iri~~s~~~ 107 (637)
..=||.|+|.+++.|....+.|++..+. +..+.+.|-.++
T Consensus 249 e~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDd 308 (650)
T KOG2318|consen 249 EEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDD 308 (650)
T ss_pred hhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCC
Confidence 1236899999999999999999998886 344455554443
No 215
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=87.18 E-value=0.059 Score=58.60 Aligned_cols=71 Identities=25% Similarity=0.265 Sum_probs=61.8
Q ss_pred CccceEEecCCCccCCHHHHHHhhcccCCeeEEEEeeCCCCCcceeeEeecCCHHHHHHHHHHHcCCCCCCcEEEEecc
Q 006641 204 PKFTNVYVNNLAETVTDEDLKKIFGHFGTITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNNDKVWYVGRA 282 (637)
Q Consensus 204 ~~~~~lfV~nLp~~~tee~L~~~F~~~G~i~~v~v~~d~~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g~~l~v~~~ 282 (637)
+...++||+|+...+..+-+..+...+|.|.++.... |||..|..+.....|+..++...+++..+.+..-
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 4557899999999999999999999999998876544 9999999999999999999988888888776664
No 216
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=86.80 E-value=2.3 Score=32.65 Aligned_cols=54 Identities=13% Similarity=0.173 Sum_probs=42.4
Q ss_pred CCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCccee
Q 006641 38 NVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIR 100 (637)
Q Consensus 38 ~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ir 100 (637)
.++-++++..+..|+ ..+|..|+. | =||.|.+.++|++|....++..+.+-.+.
T Consensus 11 ~~~v~d~K~~Lr~y~---~~~I~~d~t-----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR---WDRIRDDRT-----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCC---cceEEecCC-----E-EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 478899999999995 345555654 4 58999999999999999998877665543
No 217
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=85.36 E-value=1.6 Score=43.33 Aligned_cols=73 Identities=18% Similarity=0.143 Sum_probs=53.3
Q ss_pred ccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEE-EEEEEccch
Q 006641 310 ANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKP-LYVAVAQRK 388 (637)
Q Consensus 310 ~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~-l~V~~a~~~ 388 (637)
..|.|-+++..- -.-|..+|++||+|.+..-. ..-.+-+|.|.+.-+|+||| ..||++|+|.. |=|+--..|
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~-----~ngNwMhirYssr~~A~KAL-skng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP-----SNGNWMHIRYSSRTHAQKAL-SKNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhCeeeeeecC-----CCCceEEEEecchhHHHHhh-hhcCeeeccceEEeeeecCCH
Confidence 457777787553 34567889999999877654 22457899999999999999 77899998764 344443444
Q ss_pred H
Q 006641 389 E 389 (637)
Q Consensus 389 ~ 389 (637)
.
T Consensus 271 s 271 (350)
T KOG4285|consen 271 S 271 (350)
T ss_pred H
Confidence 4
No 218
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=83.32 E-value=1.3 Score=36.09 Aligned_cols=66 Identities=14% Similarity=0.225 Sum_probs=44.4
Q ss_pred EEEEecChHHHHHHHHHcCC-CccCCcceeeeeccCC--C-----ccccCCCccEEEeCCCccccHHHHHhHhh
Q 006641 72 AYVNYSNPQDAANAKEALNF-MPINGKPIRIMYSHRD--P-----SIRKSGYGNVFIKNLDTSIDNKALCDTFA 137 (637)
Q Consensus 72 a~V~F~~~e~A~~Al~~ln~-~~i~g~~iri~~s~~~--~-----~~~~~~~~~i~V~nLp~~it~~~L~~~F~ 137 (637)
|.|.|.+.+-|.+.++.-.+ ..+.+..++|.-+.-. . .......++|.|.|||..+++++|+|.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999999965433 3445555555433211 1 11122346799999999999999987654
No 219
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=83.09 E-value=4.6 Score=31.73 Aligned_cols=57 Identities=19% Similarity=0.325 Sum_probs=35.0
Q ss_pred CCcHHHHHHHHhccC-----CeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeee
Q 006641 38 NVNESQLYDLFSQVA-----QVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMY 103 (637)
Q Consensus 38 ~~te~~L~~~f~~~G-----~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~ 103 (637)
.++..+|..++...+ .|-.|+|..+ |+||+-. .+.|+++++.|++..++|++++|..
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~-~~~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVP-EEVAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE--TT-HHHHHHHHTT--SSS----EEE
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEEC-HHHHHHHHHHhcCCCCCCeeEEEEE
Confidence 477788888876553 5667777554 7999865 5589999999999999999999864
No 220
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=82.96 E-value=9.3 Score=32.66 Aligned_cols=67 Identities=16% Similarity=0.230 Sum_probs=47.4
Q ss_pred ceEEecC-CCccCCHHHHHHhhcccC-CeeEEEEeeCCCCCcceeeEeecCCHHHHHHHHHHHcCCCCCC
Q 006641 207 TNVYVNN-LAETVTDEDLKKIFGHFG-TITSAIVMKDSDGKSRCFGFVNFQSPDAAAAAVEKLNGTTNND 274 (637)
Q Consensus 207 ~~lfV~n-Lp~~~tee~L~~~F~~~G-~i~~v~v~~d~~g~srg~~FV~F~~~e~A~~Av~~lng~~~~g 274 (637)
+.+.+=- .|..++.++|..+.+.+- .|..+++++|.. .++-.+.+.|.+.++|.......||+.++.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~-pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT-PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC-CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3444444 444555566666666554 456677777754 366688999999999999999999998765
No 221
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=82.75 E-value=1.8 Score=35.26 Aligned_cols=69 Identities=20% Similarity=0.288 Sum_probs=45.6
Q ss_pred EEEEecCHHHHHHHHHHhc-CCeeCCeeeEEee--eehhh-hhhhccCCCccceEEecCCCccCCHHHHHHhh
Q 006641 159 GFVQFENEEAAQNAIKMLN-GMLINDKQVYVGL--FVRRQ-ERAQQNVSPKFTNVYVNNLAETVTDEDLKKIF 227 (637)
Q Consensus 159 afV~F~~~e~A~~Ai~~ln-g~~i~~~~l~V~~--~~~~~-~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F 227 (637)
|+|+|.+.+-|.+.++.-. ...+++..+.|.. ..... .........+.++|.|.|||...++++|++..
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 6899999999999987422 2235666555543 22221 11112223456889999999999999998865
No 222
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=79.83 E-value=3.4 Score=43.35 Aligned_cols=66 Identities=18% Similarity=0.294 Sum_probs=56.6
Q ss_pred cccccccCCCCCCCHHHHHHHHhhcC-CeEEEEEeecCCCCc-ccEEEEEeCCHHHHHHHHHHhCCceeC
Q 006641 309 GANLYLKNLDDSINDEKLKELFSEFG-TITSCKVMVDQHGFS-KGSGFAAFSMPEEATRALNEMNGKMIG 376 (637)
Q Consensus 309 ~~~l~V~nL~~~~t~e~L~~~F~~~G-~i~~~~i~~d~~g~~-~g~afV~f~~~~~A~~A~~~~~g~~~~ 376 (637)
+.-|+|=.+|..+|--||-.+...|- .|.+++|++| |.. +=...|.|.+.++|....+++||+.|+
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd--~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRD--GMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeec--CCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 45689999999999999999998774 7889999997 333 344799999999999999999999885
No 223
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=79.60 E-value=0.82 Score=50.09 Aligned_cols=71 Identities=20% Similarity=0.198 Sum_probs=63.8
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEc
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVA 385 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a 385 (637)
.+..++||+|+...+..+-++.+...+|.|.+++... |||+.|..+..+.+|+..++-..++|..+.+...
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 3456799999999999999999999999999998753 8999999999999999999988999998888764
No 224
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=78.79 E-value=3.2 Score=37.63 Aligned_cols=114 Identities=12% Similarity=0.018 Sum_probs=72.7
Q ss_pred EEEEcCCC--CCCcHHHHHHHHhc-cCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeecc
Q 006641 29 SLYVGDLE--QNVNESQLYDLFSQ-VAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSH 105 (637)
Q Consensus 29 ~L~V~nLp--~~~te~~L~~~f~~-~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~ 105 (637)
...|+.+. .+.+-..|.+.+.. .+....+.+..-.. ++..+.|.+.+|+.++++ .....+.|..+.+....
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l~~-----~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~ 90 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDLGD-----NLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWS 90 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEeCC-----CeEEEEEEeccceeEEEe-cccccccccchhhhhhc
Confidence 34445442 23556667666643 34332333333222 589999999999999994 45667888888776444
Q ss_pred CCCccccCC----CccEEEeCCCcc-ccHHHHHhHhhccCceeEEEEe
Q 006641 106 RDPSIRKSG----YGNVFIKNLDTS-IDNKALCDTFAAFGTVLSCKVA 148 (637)
Q Consensus 106 ~~~~~~~~~----~~~i~V~nLp~~-it~~~L~~~F~~~G~I~s~~v~ 148 (637)
++....... ..=|.|.|||.. .+++-++.+.+.+|.+..+...
T Consensus 91 ~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 91 PDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred ccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 322211111 122677899987 5888899999999998776654
No 225
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=73.97 E-value=33 Score=32.97 Aligned_cols=8 Identities=13% Similarity=0.310 Sum_probs=3.4
Q ss_pred cEEEEEeC
Q 006641 351 GSGFAAFS 358 (637)
Q Consensus 351 g~afV~f~ 358 (637)
|.++-|..
T Consensus 49 glsihcmq 56 (341)
T KOG2893|consen 49 GLSIHCMQ 56 (341)
T ss_pred Cceeehhh
Confidence 44444443
No 226
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=69.61 E-value=21 Score=35.05 Aligned_cols=34 Identities=18% Similarity=0.329 Sum_probs=27.0
Q ss_pred cceEEecCCCccC------------CHHHHHHhhcccCCeeEEEEe
Q 006641 206 FTNVYVNNLAETV------------TDEDLKKIFGHFGTITSAIVM 239 (637)
Q Consensus 206 ~~~lfV~nLp~~~------------tee~L~~~F~~~G~i~~v~v~ 239 (637)
..+|++.+||-.| +++.|+..|+.||.|..+.+.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 3578888887653 567899999999999988764
No 227
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=67.21 E-value=4.1 Score=37.51 Aligned_cols=74 Identities=23% Similarity=0.428 Sum_probs=54.4
Q ss_pred cEEEEcCCCCCCcHH-----HHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCc-ceee
Q 006641 28 VSLYVGDLEQNVNES-----QLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGK-PIRI 101 (637)
Q Consensus 28 ~~L~V~nLp~~~te~-----~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~-~iri 101 (637)
.++.+.+|+..+-.+ ....+|.+|-+..-.+++|.. +..-|+|.+++.|..|.-.++...|.|+ .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf------rrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF------RRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh------ceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 467788887665432 235566666666555555543 3677999999999999999999999998 8888
Q ss_pred eeccCC
Q 006641 102 MYSHRD 107 (637)
Q Consensus 102 ~~s~~~ 107 (637)
.++++.
T Consensus 85 yfaQ~~ 90 (193)
T KOG4019|consen 85 YFAQPG 90 (193)
T ss_pred EEccCC
Confidence 887654
No 228
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=64.86 E-value=78 Score=33.74 Aligned_cols=11 Identities=18% Similarity=0.350 Sum_probs=5.3
Q ss_pred cCCHHHHHHHH
Q 006641 254 FQSPDAAAAAV 264 (637)
Q Consensus 254 F~~~e~A~~Av 264 (637)
|....+....+
T Consensus 330 ~Ds~K~~lEv~ 340 (654)
T COG5180 330 FDSSKNLLEVI 340 (654)
T ss_pred ccchhHHHHHH
Confidence 55554444443
No 229
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=64.26 E-value=24 Score=28.54 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=45.8
Q ss_pred EEEEcCCCCCCcHHHHHHHHhc-cC-CeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHc
Q 006641 29 SLYVGDLEQNVNESQLYDLFSQ-VA-QVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL 89 (637)
Q Consensus 29 ~L~V~nLp~~~te~~L~~~f~~-~G-~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~l 89 (637)
.-|+-..+..++-.++++.++. || .|.+|+.+.-.... --|||.+....+|......+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~---KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGE---KKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc---EEEEEEeCCCCcHHHHHHhh
Confidence 4677778889999999999865 66 88898888776422 24999999999999887554
No 230
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=63.58 E-value=6.8 Score=40.49 Aligned_cols=68 Identities=24% Similarity=0.363 Sum_probs=48.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccC-CeEEEEEee-eCCCCC-cccEEEEEecChHHHHHHHHHcCCCcc
Q 006641 27 NVSLYVGDLEQNVNESQLYDLFSQVA-QVVSVRVCR-DQSKRS-SLGYAYVNYSNPQDAANAKEALNFMPI 94 (637)
Q Consensus 27 ~~~L~V~nLp~~~te~~L~~~f~~~G-~V~~i~v~~-d~~t~~-s~g~a~V~F~~~e~A~~Al~~ln~~~i 94 (637)
-..+.|..||+.+++++|.+.++.+- .|.+..... +..... -.+.|||+|.+.+|.....+.+++..+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 45789999999999999999888775 444444442 222222 246799999999997777766665433
No 231
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=62.80 E-value=4.7 Score=37.15 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=50.3
Q ss_pred cccccCCCCCCC-----HHHHHHHHhhcCCeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCE-EEEEEE
Q 006641 311 NLYLKNLDDSIN-----DEKLKELFSEFGTITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRK-PLYVAV 384 (637)
Q Consensus 311 ~l~V~nL~~~~t-----~e~L~~~F~~~G~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~-~l~V~~ 384 (637)
.+.+.+++..+- ......+|.+|-+.....+++ +.++.-|.|.+++.|..|...++...|.|+ .+..-+
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-----sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yf 86 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-----SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYF 86 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-----hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEE
Confidence 355566654432 233445566555554444443 255677899999999999999999999998 888888
Q ss_pred ccch
Q 006641 385 AQRK 388 (637)
Q Consensus 385 a~~~ 388 (637)
+++.
T Consensus 87 aQ~~ 90 (193)
T KOG4019|consen 87 AQPG 90 (193)
T ss_pred ccCC
Confidence 8754
No 232
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=62.30 E-value=29 Score=27.57 Aligned_cols=58 Identities=12% Similarity=0.110 Sum_probs=44.7
Q ss_pred EEEEcCCCCCCcHHHHHHHHhc-cC-CeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHc
Q 006641 29 SLYVGDLEQNVNESQLYDLFSQ-VA-QVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEAL 89 (637)
Q Consensus 29 ~L~V~nLp~~~te~~L~~~f~~-~G-~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~l 89 (637)
.-|+-..+..++-.+++..++. || .|.+|+.+.-.... --|||.+....+|...-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~---KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGE---KKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc---eEEEEEECCCCcHHHHHHhh
Confidence 4677888999999999998865 56 78888887665322 34999999999988776543
No 233
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=62.25 E-value=15 Score=28.34 Aligned_cols=62 Identities=6% Similarity=0.232 Sum_probs=48.3
Q ss_pred HHHHHHHhccC-CeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeeccC
Q 006641 42 SQLYDLFSQVA-QVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHR 106 (637)
Q Consensus 42 ~~L~~~f~~~G-~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~~ 106 (637)
++|.+-|...| +|.+|+-.+.+.++..+-.-||+.....+...+ ++=..+++..|+|++...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCC
Confidence 46777788888 999999999988888888899998887764433 345567888999987654
No 234
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.11 E-value=20 Score=39.16 Aligned_cols=77 Identities=23% Similarity=0.270 Sum_probs=59.3
Q ss_pred ccccccccCCCCC-CCHHHHHHHHhhc----CCeEEEEEeecCC-----------CC-----------------------
Q 006641 308 KGANLYLKNLDDS-INDEKLKELFSEF----GTITSCKVMVDQH-----------GF----------------------- 348 (637)
Q Consensus 308 ~~~~l~V~nL~~~-~t~e~L~~~F~~~----G~i~~~~i~~d~~-----------g~----------------------- 348 (637)
.+.+|-|-|++|+ +..++|.-+|+.| |.|.+|.|....= |.
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 4567999999965 6789999999877 6999999876421 21
Q ss_pred -------------cc-cEEEEEeCCHHHHHHHHHHhCCceeCC--EEEEEEE
Q 006641 349 -------------SK-GSGFAAFSMPEEATRALNEMNGKMIGR--KPLYVAV 384 (637)
Q Consensus 349 -------------~~-g~afV~f~~~~~A~~A~~~~~g~~~~g--~~l~V~~ 384 (637)
-+ -||.|+|.+.+.|.+.....+|..+.. ..|.+.|
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 11 268999999999999999999999864 4444444
No 235
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=57.05 E-value=20 Score=27.61 Aligned_cols=62 Identities=13% Similarity=0.269 Sum_probs=48.4
Q ss_pred HHHHHHHhccC-CeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeeeccC
Q 006641 42 SQLYDLFSQVA-QVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHR 106 (637)
Q Consensus 42 ~~L~~~f~~~G-~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~~ 106 (637)
+++.+-|...| +|+.|+.++.+.++.....=+|+.....+-.. -|+-..++|+++.|+...+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 46778888889 99999999999988888888999887765555 2455567888888876543
No 236
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=56.78 E-value=7 Score=35.36 Aligned_cols=110 Identities=18% Similarity=0.080 Sum_probs=67.8
Q ss_pred cccHHHHHhHhhc-cCceeEEEEeECCCCCceeEEEEEecCHHHHHHHHHHhcCCeeCCeeeEEeeeehhhhhhhccCCC
Q 006641 126 SIDNKALCDTFAA-FGTVLSCKVAIDSNGQSKGYGFVQFENEEAAQNAIKMLNGMLINDKQVYVGLFVRRQERAQQNVSP 204 (637)
Q Consensus 126 ~it~~~L~~~F~~-~G~I~s~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~i~~~~l~V~~~~~~~~~~~~~~~~ 204 (637)
.++-..|...+.. ++....+.+..- ..++..+.|.+.+++.++++. ....+++..+.+....+...........
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l----~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~~~~~~~~~~~ 102 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL----GDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPDFNPSEVKFEH 102 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe----CCCeEEEEEEeccceeEEEec-ccccccccchhhhhhcccccccccceec
Confidence 3455555555544 232222333321 356899999999999999873 4455667777776555433222111111
Q ss_pred ccceEEecCCCcc-CCHHHHHHhhcccCCeeEEEEee
Q 006641 205 KFTNVYVNNLAET-VTDEDLKKIFGHFGTITSAIVMK 240 (637)
Q Consensus 205 ~~~~lfV~nLp~~-~tee~L~~~F~~~G~i~~v~v~~ 240 (637)
...=|.|.|||.. ++++-+..+.+.+|.+..+....
T Consensus 103 ~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 103 IPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred cchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 2223567799986 78888999999999988776533
No 237
>PRK11901 hypothetical protein; Reviewed
Probab=55.15 E-value=35 Score=34.78 Aligned_cols=68 Identities=15% Similarity=0.114 Sum_probs=42.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCC-cccEEEEEecChHHHHHHHHHcCCCccCCcc
Q 006641 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRS-SLGYAYVNYSNPQDAANAKEALNFMPINGKP 98 (637)
Q Consensus 27 ~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~-s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~ 98 (637)
.=+|-|.. .-+++.|..|.+..+ +..++|.+..+.++ +...-|=.|.+.++|++|+..|-......++
T Consensus 245 ~YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~lqa~~P 313 (327)
T PRK11901 245 HYTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAEVQAKKP 313 (327)
T ss_pred CeEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHHHHhCCC
Confidence 34444444 456788888888775 34566666544433 2222334599999999999998754433333
No 238
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=53.51 E-value=38 Score=27.41 Aligned_cols=57 Identities=12% Similarity=0.246 Sum_probs=43.6
Q ss_pred cccccCCCCCCCHHHHHHHHhh-cC-CeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHH
Q 006641 311 NLYLKNLDDSINDEKLKELFSE-FG-TITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNE 369 (637)
Q Consensus 311 ~l~V~nL~~~~t~e~L~~~F~~-~G-~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~ 369 (637)
+-|+--++...+..++++.++. || .|.+|..+.-..+ .-=|||++..-++|......
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~--~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG--EKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--cEEEEEEeCCCCcHHHHHHh
Confidence 4566678899999999999998 56 6788877766433 34499999998888776544
No 239
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.15 E-value=1.5e+02 Score=31.88 Aligned_cols=15 Identities=27% Similarity=0.293 Sum_probs=6.5
Q ss_pred EEeCCHHHHHHHHHHh
Q 006641 355 AAFSMPEEATRALNEM 370 (637)
Q Consensus 355 V~f~~~~~A~~A~~~~ 370 (637)
+.|.+-+ ++++.+.|
T Consensus 319 ~dfSDDE-kEaeak~~ 333 (483)
T KOG2236|consen 319 QDFSDDE-KEAEAKQM 333 (483)
T ss_pred hccchHH-HHHHHHHH
Confidence 5565433 33333344
No 240
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=51.67 E-value=44 Score=26.55 Aligned_cols=57 Identities=11% Similarity=0.216 Sum_probs=43.0
Q ss_pred cccccCCCCCCCHHHHHHHHhh-cC-CeEEEEEeecCCCCcccEEEEEeCCHHHHHHHHHH
Q 006641 311 NLYLKNLDDSINDEKLKELFSE-FG-TITSCKVMVDQHGFSKGSGFAAFSMPEEATRALNE 369 (637)
Q Consensus 311 ~l~V~nL~~~~t~e~L~~~F~~-~G-~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~ 369 (637)
+-|+-.++.+.+..+|++.++. || .|.+|..+.-..+ .--|||++..-+.|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~--~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG--EKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--ceEEEEEECCCCcHHHHHHh
Confidence 4677778999999999999988 56 6777777665433 34499999888888766543
No 241
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=48.91 E-value=26 Score=30.24 Aligned_cols=49 Identities=27% Similarity=0.485 Sum_probs=28.4
Q ss_pred EEEeCCCcc---------ccHHHHHhHhhccCceeEEEEeECCCCCceeEEEEEecCHHH
Q 006641 118 VFIKNLDTS---------IDNKALCDTFAAFGTVLSCKVAIDSNGQSKGYGFVQFENEEA 168 (637)
Q Consensus 118 i~V~nLp~~---------it~~~L~~~F~~~G~I~s~~v~~~~~g~skg~afV~F~~~e~ 168 (637)
+.|-|++.. .+.++|.+.|+.|..+ .++.+.+..| ..|+++|+|...-.
T Consensus 11 gIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~~g-h~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 11 GIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGKQG-HTGFAIVEFNKDWS 68 (116)
T ss_dssp EEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEETTE-EEEEEEEE--SSHH
T ss_pred EEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCCCC-CcEEEEEEECCChH
Confidence 566777544 3678899999999886 4666666654 68899999988543
No 242
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=47.85 E-value=36 Score=25.63 Aligned_cols=20 Identities=25% Similarity=0.488 Sum_probs=16.2
Q ss_pred HHHHHHHhhcCCeEEEEEee
Q 006641 324 EKLKELFSEFGTITSCKVMV 343 (637)
Q Consensus 324 e~L~~~F~~~G~i~~~~i~~ 343 (637)
.+||++|+..|+|.-+.+-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 68999999999997765543
No 243
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=47.43 E-value=25 Score=30.44 Aligned_cols=50 Identities=12% Similarity=0.270 Sum_probs=28.9
Q ss_pred EEEEcCCCCC---------CcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHH
Q 006641 29 SLYVGDLEQN---------VNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQD 81 (637)
Q Consensus 29 ~L~V~nLp~~---------~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~ 81 (637)
++.|-|++.. ++.++|.+.|+.|.++ .|+.+.+.. .+.|++.|.|.+.-.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~~--gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGKQ--GHTGFAIVEFNKDWS 68 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEETT--EEEEEEEEE--SSHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCCC--CCcEEEEEEECCChH
Confidence 4556666543 3458899999999987 577777765 456899999987643
No 244
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.42 E-value=35 Score=35.49 Aligned_cols=56 Identities=23% Similarity=0.251 Sum_probs=46.7
Q ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCe-EEEEEeecCCCCcccEEEEEeCCHHHHHHHHHH
Q 006641 308 KGANLYLKNLDDSINDEKLKELFSEFGTI-TSCKVMVDQHGFSKGSGFAAFSMPEEATRALNE 369 (637)
Q Consensus 308 ~~~~l~V~nL~~~~t~e~L~~~F~~~G~i-~~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~ 369 (637)
....|-|-|+|...--|||...|+.|+.- -+|+++.|. .+|-.|.+...|..|+..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc------eeEEeecchHHHHHHhhc
Confidence 34568999999999999999999999753 467777763 599999999999999954
No 245
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=40.71 E-value=1.1e+02 Score=31.33 Aligned_cols=15 Identities=7% Similarity=0.065 Sum_probs=6.5
Q ss_pred ecCCCccCCHHHHHH
Q 006641 211 VNNLAETVTDEDLKK 225 (637)
Q Consensus 211 V~nLp~~~tee~L~~ 225 (637)
+...|.++++-.|.+
T Consensus 154 ~~k~p~Nin~~~lfe 168 (465)
T KOG3973|consen 154 FPKQPGNINEWKLFE 168 (465)
T ss_pred CCCCCCCchHHHHHH
Confidence 333444455444433
No 246
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=38.24 E-value=1.2e+02 Score=34.59 Aligned_cols=61 Identities=13% Similarity=0.205 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHhhcCCeE-----EEEEeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccc
Q 006641 319 DSINDEKLKELFSEFGTIT-----SCKVMVDQHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQR 387 (637)
Q Consensus 319 ~~~t~e~L~~~F~~~G~i~-----~~~i~~d~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~ 387 (637)
..++..+|..++..-+.|. .|+|+ ..|.||+.. .+.|...+..|++..+.|++|.|+.+..
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~-------~~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLF-------ASHSTIELP-KGMPGEVLQHFTRTRILNKPMNMQLLGD 562 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEe-------CCceEEEcC-hhhHHHHHHHhccccccCCceEEEECCC
Confidence 5678888888887666543 45565 347899996 6778899999999999999999998853
No 247
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.55 E-value=56 Score=34.03 Aligned_cols=53 Identities=23% Similarity=0.250 Sum_probs=42.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccC----CeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCC
Q 006641 28 VSLYVGDLEQNVNESQLYDLFSQVA----QVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNF 91 (637)
Q Consensus 28 ~~L~V~nLp~~~te~~L~~~f~~~G----~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~ 91 (637)
..|-|-|.|.....++|...|+.|+ .|.+| .|. +||-.|.+...|..|| .+.+
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWv---Ddt-------halaVFss~~~AaeaL-t~kh 448 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWV---DDT-------HALAVFSSVNRAAEAL-TLKH 448 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEe---ecc-------eeEEeecchHHHHHHh-hccC
Confidence 6899999999999999999999887 34443 332 6999999999999999 4443
No 248
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=37.43 E-value=70 Score=24.14 Aligned_cols=22 Identities=14% Similarity=0.161 Sum_probs=17.1
Q ss_pred HHHHhHhhccCceeEEEEeECC
Q 006641 130 KALCDTFAAFGTVLSCKVAIDS 151 (637)
Q Consensus 130 ~~L~~~F~~~G~I~s~~v~~~~ 151 (637)
.+|+++|+..|.|.-+-+..-+
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~e 30 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPYE 30 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcccc
Confidence 5799999999999766654433
No 249
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=35.49 E-value=7.5 Score=41.96 Aligned_cols=70 Identities=14% Similarity=0.204 Sum_probs=53.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCCCccCC
Q 006641 27 NVSLYVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNFMPING 96 (637)
Q Consensus 27 ~~~L~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g 96 (637)
.++|+|+|++|.++-++|..+|+.+--+..+....+..-++-.-..||.|.-.-+-..|+.+||+..+..
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 5789999999999999999999998776666665554444444568999988777777777777655443
No 250
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=34.89 E-value=75 Score=33.15 Aligned_cols=39 Identities=21% Similarity=0.437 Sum_probs=31.5
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHHhcc----CCeEEEEEeee
Q 006641 24 GYGNVSLYVGDLEQN-VNESQLYDLFSQV----AQVVSVRVCRD 62 (637)
Q Consensus 24 ~~~~~~L~V~nLp~~-~te~~L~~~f~~~----G~V~~i~v~~d 62 (637)
+..+..|-|-||+++ +...+|+-+|+.| |.+..|.|+..
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 456789999999987 7778999999876 57877888754
No 251
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=33.48 E-value=42 Score=33.24 Aligned_cols=48 Identities=21% Similarity=0.155 Sum_probs=36.8
Q ss_pred ccccccCCCCCCCHHHHHHHHhhcCC-eEEEEEeecCCCCcccEEEEEeCCHHH
Q 006641 310 ANLYLKNLDDSINDEKLKELFSEFGT-ITSCKVMVDQHGFSKGSGFAAFSMPEE 362 (637)
Q Consensus 310 ~~l~V~nL~~~~t~e~L~~~F~~~G~-i~~~~i~~d~~g~~~g~afV~f~~~~~ 362 (637)
+-||++||+.++-..||+..+.+.|- .-++.+- ..+|-||+.|.+...
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk-----g~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK-----GHFGKCFLHFGNRKG 379 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee-----cCCcceeEecCCccC
Confidence 45999999999999999999998763 3445442 236779999987543
No 252
>KOG3168 consensus U1 snRNP component [Transcription]
Probab=32.20 E-value=2.4e+02 Score=25.80 Aligned_cols=9 Identities=11% Similarity=0.246 Sum_probs=4.2
Q ss_pred ccEEEEEeC
Q 006641 350 KGSGFAAFS 358 (637)
Q Consensus 350 ~g~afV~f~ 358 (637)
+.+++|...
T Consensus 65 r~lgLvllR 73 (177)
T KOG3168|consen 65 RVLGLVLLR 73 (177)
T ss_pred eEEEEEEec
Confidence 444555443
No 253
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.89 E-value=6.8e+02 Score=29.48 Aligned_cols=133 Identities=18% Similarity=0.146 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCC-CCCCCCCCCCCCCCCCCccC
Q 006641 419 HHGAPRLGPQQLYYGQGTPGLMPPQAAGYGFQQQVFPGLRPGGPNYIMPYHLQRQVHPG-QRTGVRRSGNTHQMQQPQFM 497 (637)
Q Consensus 419 ~~g~~~~g~~~~~~g~~~~~~~p~~~~g~g~~~~~~~~~~~g~~~~~~p~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~ 497 (637)
+...+..| ++.+||+.........+.+.-.+.+++++.+|.++..+.|++++..++.. .+++.++-|+.+++.++.+-
T Consensus 8 g~p~p~~g-~~~~~~g~~~~~a~~~~~~~~~p~p~~~~~~p~~~ppg~~p~~~q~~~~~~~~p~~~~pg~~p~~sq~~~~ 86 (1007)
T KOG1984|consen 8 GQPQPNSG-PPNFYGGSSNSLAQAMPNGSINPPPPMQGTGPRGPPPGAPPQQPQSGQSPMARPPQRRPGPPPGVSQPNGF 86 (1007)
T ss_pred CCCCCCCC-CCCcCCCCCchhhhhccCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCcccCCCCCCCCCccccc
Q ss_pred C--CCCCCCccCCCCCCCCCCCCccccCCCccCCCCCCCCCCCCCCCCCCCCcchhh
Q 006641 498 R--NSNQGIRYLDNARNGTDQSVVSMVPVPFEVSGMPATPVETPRPVPVPISTLTSA 552 (637)
Q Consensus 498 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 552 (637)
. |..+...-.+...+.-+..-+...+.+++...--....++...-+.+..+++..
T Consensus 87 a~~p~~q~~~p~~~s~~g~p~~~gs~~s~~~~~p~~~~~~gpp~g~~q~~~~pls~~ 143 (1007)
T KOG1984|consen 87 AASPSSQPSYPGRPSTPGGPQAGGSQSSFAAAGPSSGSGTGPPSGNSQGPAGPLSQG 143 (1007)
T ss_pred CCCccccCCCCCCCCCCCCcccCCCcccccccCCCCCCcCCCCCCccCCCCCccccC
No 254
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=31.22 E-value=1e+02 Score=30.65 Aligned_cols=49 Identities=10% Similarity=0.276 Sum_probs=35.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCe-EEEEEeeeCCCCCcccEEEEEecChHH
Q 006641 27 NVSLYVGDLEQNVNESQLYDLFSQVAQV-VSVRVCRDQSKRSSLGYAYVNYSNPQD 81 (637)
Q Consensus 27 ~~~L~V~nLp~~~te~~L~~~f~~~G~V-~~i~v~~d~~t~~s~g~a~V~F~~~e~ 81 (637)
.+-|||+||+.++.-.+|+.-+.+-+.+ .+|.-- -+.|-||+-|.+...
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNRKG 379 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCccC
Confidence 4569999999999999999999877633 233221 123679999987643
No 255
>PRK10905 cell division protein DamX; Validated
Probab=30.72 E-value=85 Score=32.01 Aligned_cols=61 Identities=15% Similarity=0.069 Sum_probs=37.8
Q ss_pred EEcCCCCCCcHHHHHHHHhccCCeEEEEEeeeCCCCC-cccEEEEEecChHHHHHHHHHcCCC
Q 006641 31 YVGDLEQNVNESQLYDLFSQVAQVVSVRVCRDQSKRS-SLGYAYVNYSNPQDAANAKEALNFM 92 (637)
Q Consensus 31 ~V~nLp~~~te~~L~~~f~~~G~V~~i~v~~d~~t~~-s~g~a~V~F~~~e~A~~Al~~ln~~ 92 (637)
|+--|--.-+++.|.++..+.| +....+....+.++ ..-.-|=.|.+.++|++|++.|-..
T Consensus 248 YTLQL~A~Ss~~~l~~fakKlg-L~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa~ 309 (328)
T PRK10905 248 YTLQLSSSSNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPAD 309 (328)
T ss_pred eEEEEEecCCHHHHHHHHHHcC-CCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCHH
Confidence 3333434456788888888775 34444554444333 2222333599999999999998643
No 256
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.50 E-value=12 Score=39.11 Aligned_cols=79 Identities=11% Similarity=-0.016 Sum_probs=63.8
Q ss_pred cccccCCCCCCCHHHHHHHHhhcCCeEEEEEeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCEEEEEEEccchH
Q 006641 311 NLYLKNLDDSINDEKLKELFSEFGTITSCKVMVD-QHGFSKGSGFAAFSMPEEATRALNEMNGKMIGRKPLYVAVAQRKE 389 (637)
Q Consensus 311 ~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d-~~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~g~~l~V~~a~~~~ 389 (637)
..|+..++...++.++.-.|..||.|..+..-+- ..+..+-.+||+-. .++|..+|..+....+.|..++|+++..--
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~-~~~~~~~i~~~k~q~~~~~~~r~~~~~~s~ 83 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAK-KANGPNYIQPQKRQTTFESQDRKAVSPSSS 83 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeee-ccCcccccCHHHHhhhhhhhhhhhcCchhh
Confidence 4688899999999999999999999998877655 34556778898876 466778888888888888899999987554
Q ss_pred H
Q 006641 390 E 390 (637)
Q Consensus 390 ~ 390 (637)
.
T Consensus 84 ~ 84 (572)
T KOG4365|consen 84 E 84 (572)
T ss_pred h
Confidence 3
No 257
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=27.88 E-value=84 Score=32.44 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=39.4
Q ss_pred EEEEecChHHHHHHHHHcCCCccCCcceeeeeccCCCccccCCCccEEEeCCCccccHHHHHhHhhcc
Q 006641 72 AYVNYSNPQDAANAKEALNFMPINGKPIRIMYSHRDPSIRKSGYGNVFIKNLDTSIDNKALCDTFAAF 139 (637)
Q Consensus 72 a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~s~~~~~~~~~~~~~i~V~nLp~~it~~~L~~~F~~~ 139 (637)
|||.|.+.++|..|++.+.... .+.+++..+.+- . .|.=.||..+..+..++..+...
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP-~-------DI~W~NL~~~~~~r~~R~~~~~~ 58 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEP-D-------DIIWENLSISSKQRFLRRIIVNI 58 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCc-c-------cccccccCCChHHHHHHHHHHHH
Confidence 7999999999999998654432 344555544322 1 25568887777777777766654
No 258
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=27.64 E-value=80 Score=25.43 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=23.7
Q ss_pred CeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcCC
Q 006641 53 QVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALNF 91 (637)
Q Consensus 53 ~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln~ 91 (637)
.|.||.+..+-+ ||-||+=.+..+..+|++.+.+
T Consensus 33 ~I~Si~~~~~lk-----GyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 33 NIYSIFAPDSLK-----GYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp ---EEEE-TTST-----SEEEEEESSHHHHHHHHTT-TT
T ss_pred ceEEEEEeCCCc-----eEEEEEeCCHHHHHHHHhcccc
Confidence 677877655533 8999999999999999976654
No 259
>PF07235 DUF1427: Protein of unknown function (DUF1427); InterPro: IPR009872 This family consists of several bacterial proteins of around 100 residues in length. The function of this family is unknown.
Probab=27.11 E-value=25 Score=28.39 Aligned_cols=28 Identities=36% Similarity=0.479 Sum_probs=21.2
Q ss_pred hhcccccchhhhcc-----------CCCcccchhhhccc
Q 006641 563 RMLGEQLYPLVENI-----------EPVHASKVTGMLLE 590 (637)
Q Consensus 563 ~~~g~~~~~~~~~~-----------~~~~~~kitgm~l~ 590 (637)
-++||+++|+|.++ +.+-+.+|+|.|=.
T Consensus 38 i~~Ge~~~p~~~~~~~~~~~~~a~~~~~c~~hv~G~lp~ 76 (90)
T PF07235_consen 38 ILLGEQAIPLVRRLLRGHPLTAAWFHAECVPHVFGQLPG 76 (90)
T ss_pred HhcccchhHHHHHHhcCCchhhhhhhccccccccCCCCC
Confidence 47899999999877 33557888887743
No 260
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=26.42 E-value=1.4e+02 Score=25.01 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=28.8
Q ss_pred CCcHHHHHHHH-hccCCeEEEEEeeeCCC----CCcccEEEEEecChHHHHHH
Q 006641 38 NVNESQLYDLF-SQVAQVVSVRVCRDQSK----RSSLGYAYVNYSNPQDAANA 85 (637)
Q Consensus 38 ~~te~~L~~~f-~~~G~V~~i~v~~d~~t----~~s~g~a~V~F~~~e~A~~A 85 (637)
..+..+|++.+ +.++.=.+..|+..-.| ++|.|||.| |.|.+.|.+.
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 45667887765 66664334444444333 668888888 6777766543
No 261
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=26.31 E-value=1.5e+02 Score=26.57 Aligned_cols=54 Identities=13% Similarity=0.297 Sum_probs=38.8
Q ss_pred cccccCCCCCCCHHHHHHHHhh-cC-CeEEEEEeecCCCCcccEEEEEeCCHHHHHHH
Q 006641 311 NLYLKNLDDSINDEKLKELFSE-FG-TITSCKVMVDQHGFSKGSGFAAFSMPEEATRA 366 (637)
Q Consensus 311 ~l~V~nL~~~~t~e~L~~~F~~-~G-~i~~~~i~~d~~g~~~g~afV~f~~~~~A~~A 366 (637)
+-|+--++...+..+|++.++. |+ .|.+|..+.-..|. --|||++....+|...
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~--KKA~V~L~~~~~aidv 138 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGL--KKAYIRLSPDVDALDV 138 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCc--eEEEEEECCCCcHHHH
Confidence 4566668889999999999997 55 56777666554442 3489999776665543
No 262
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=25.47 E-value=88 Score=28.99 Aligned_cols=70 Identities=16% Similarity=0.138 Sum_probs=46.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcc-CCeEEEEEeeeCCC-CCcccEEEEEecChHHHHHHHHHcCCCccCCcceeeee
Q 006641 28 VSLYVGDLEQNVNESQLYDLFSQV-AQVVSVRVCRDQSK-RSSLGYAYVNYSNPQDAANAKEALNFMPINGKPIRIMY 103 (637)
Q Consensus 28 ~~L~V~nLp~~~te~~L~~~f~~~-G~V~~i~v~~d~~t-~~s~g~a~V~F~~~e~A~~Al~~ln~~~i~g~~iri~~ 103 (637)
+++|.. .|++.|.++..-. |.+..|...+.... +..+|-.||+|.+.+.|..++++- ........+..+|
T Consensus 112 r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~-e~~~~e~el~r~~ 183 (205)
T KOG4213|consen 112 RTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTH-EEKGAETELKRSG 183 (205)
T ss_pred hhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhh-hhhccchHHHHHH
Confidence 455555 5566665554222 68889888776543 345689999999999999999653 3334445555555
No 263
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=25.20 E-value=2e+02 Score=25.92 Aligned_cols=58 Identities=21% Similarity=0.186 Sum_probs=41.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhc-cC-CeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHH
Q 006641 28 VSLYVGDLEQNVNESQLYDLFSQ-VA-QVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEA 88 (637)
Q Consensus 28 ~~L~V~nLp~~~te~~L~~~f~~-~G-~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ 88 (637)
..-|+-..+..++-.+|++.++. |+ .|.+|..+.-.... --|||.+....||......
T Consensus 82 ~N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~---KKA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 82 NNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGL---KKAYIRLSPDVDALDVANK 141 (145)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCc---eEEEEEECCCCcHHHHHHh
Confidence 35677778889999999988865 56 77777776654311 2499999888887665533
No 264
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=24.74 E-value=5.6e+02 Score=29.77 Aligned_cols=7 Identities=14% Similarity=0.596 Sum_probs=3.2
Q ss_pred ccccCCC
Q 006641 312 LYLKNLD 318 (637)
Q Consensus 312 l~V~nL~ 318 (637)
|||.+-.
T Consensus 670 Lfi~~~h 676 (931)
T KOG2044|consen 670 LFISDKH 676 (931)
T ss_pred EEecCCC
Confidence 4554443
No 265
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=24.17 E-value=95 Score=32.59 Aligned_cols=58 Identities=21% Similarity=0.227 Sum_probs=47.7
Q ss_pred cccccCCCCCCCHH--------HHHHHHhh--cCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHH
Q 006641 311 NLYLKNLDDSINDE--------KLKELFSE--FGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALN 368 (637)
Q Consensus 311 ~l~V~nL~~~~t~e--------~L~~~F~~--~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~ 368 (637)
.+|+.+.....+.+ ++...|.. ++.+..+...+|. +..++|-.|++|...+.|+++..
T Consensus 176 ~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 176 DVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 47888887665554 99999999 6778888887774 66788999999999999999984
No 266
>PF14893 PNMA: PNMA
Probab=22.75 E-value=1.1e+02 Score=31.87 Aligned_cols=52 Identities=13% Similarity=0.226 Sum_probs=32.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhc-cCCeEEEEEeeeC--CCCCcccEEEEEecC
Q 006641 26 GNVSLYVGDLEQNVNESQLYDLFSQ-VAQVVSVRVCRDQ--SKRSSLGYAYVNYSN 78 (637)
Q Consensus 26 ~~~~L~V~nLp~~~te~~L~~~f~~-~G~V~~i~v~~d~--~t~~s~g~a~V~F~~ 78 (637)
..++|.|.+||.+++|+++.+.+.. .-+.=..+|.... .... .--|+|+|..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~-~~aalve~~e 71 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREEN-AKAALVEFAE 71 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcc-cceeeeeccc
Confidence 3588999999999999999988754 3233334443221 1111 1257787763
No 267
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=22.47 E-value=2.1e+02 Score=22.30 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=31.9
Q ss_pred HHHHHHHhccCCeEEEEEeeeCCCCCcccEEEEEecChHHHHHHHHHcC
Q 006641 42 SQLYDLFSQVAQVVSVRVCRDQSKRSSLGYAYVNYSNPQDAANAKEALN 90 (637)
Q Consensus 42 ~~L~~~f~~~G~V~~i~v~~d~~t~~s~g~a~V~F~~~e~A~~Al~~ln 90 (637)
.++.+.+..+| +...+++-..- + ++.|+.+.+.++++++.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~-G---~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGG-G---PTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSS-S---SEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCC-C---CeEEEEECCHHHHHHHHHHHH
Confidence 45677788888 55666655521 1 578888889999999887763
No 268
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=21.18 E-value=26 Score=38.02 Aligned_cols=70 Identities=13% Similarity=0.116 Sum_probs=51.6
Q ss_pred cccccccccCCCCCCCHHHHHHHHhhcCCeEEEEEeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 006641 307 LKGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMVDQ-HGFSKGSGFAAFSMPEEATRALNEMNGKMIG 376 (637)
Q Consensus 307 ~~~~~l~V~nL~~~~t~e~L~~~F~~~G~i~~~~i~~d~-~g~~~g~afV~f~~~~~A~~A~~~~~g~~~~ 376 (637)
...|.|+++|+...++-++|..+++.+-.+..+-+-.+. ...-..+++|+|+---.-..|+.+||+..+.
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 356789999999999999999999988666665554432 2223557889998776667777777775553
No 269
>CHL00030 rpl23 ribosomal protein L23
Probab=20.54 E-value=2e+02 Score=23.71 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=28.0
Q ss_pred EEEEcCCCCCCcHHHHHHHHhc-cC-CeEEEEEeeeC
Q 006641 29 SLYVGDLEQNVNESQLYDLFSQ-VA-QVVSVRVCRDQ 63 (637)
Q Consensus 29 ~L~V~nLp~~~te~~L~~~f~~-~G-~V~~i~v~~d~ 63 (637)
.-|+-..+.++|-.++++.++. || .|.+|+.+.-.
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~ 56 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLP 56 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcC
Confidence 5788888999999999999965 66 78888776554
Done!